Citrus Sinensis ID: 003472
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 817 | 2.2.26 [Sep-21-2011] | |||||||
| B0F481 | 833 | Bifunctional dethiobiotin | yes | no | 0.916 | 0.899 | 0.699 | 0.0 | |
| Q6ZKV8 | 821 | Bifunctional dethiobiotin | yes | no | 0.925 | 0.920 | 0.583 | 0.0 | |
| P22805 | 455 | Adenosylmethionine-8-amin | yes | no | 0.468 | 0.841 | 0.272 | 2e-31 | |
| P57379 | 428 | Adenosylmethionine-8-amin | yes | no | 0.433 | 0.827 | 0.263 | 4e-30 | |
| P44426 | 430 | Adenosylmethionine-8-amin | yes | no | 0.394 | 0.748 | 0.285 | 9e-30 | |
| Q2FVJ6 | 452 | Adenosylmethionine-8-amin | yes | no | 0.460 | 0.831 | 0.233 | 7e-28 | |
| O66557 | 453 | Adenosylmethionine-8-amin | yes | no | 0.450 | 0.812 | 0.264 | 8e-28 | |
| B7GHM5 | 454 | Adenosylmethionine-8-amin | yes | no | 0.447 | 0.806 | 0.261 | 2e-27 | |
| Q74CT9 | 453 | Adenosylmethionine-8-amin | yes | no | 0.461 | 0.832 | 0.264 | 1e-26 | |
| Q8A7T2 | 741 | Biotin biosynthesis bifun | yes | no | 0.390 | 0.430 | 0.276 | 1e-26 |
| >sp|B0F481|BIODA_ARATH Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial OS=Arabidopsis thaliana GN=BIO3-BIO1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1074 bits (2777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/771 (69%), Positives = 626/771 (81%), Gaps = 22/771 (2%)
Query: 30 PLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSD 89
P LPL+HPT+ IWSANTSLGKTLVS G+++SFLL SS+ K +YLKPIQTG+P DSD
Sbjct: 29 PFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLKPIQTGFPSDSD 88
Query: 90 SRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNF 149
SRF+F+KL SLSLRR P S+ SNS+L SSL AAKS L + S M LNF
Sbjct: 89 SRFVFSKLDSLSLRRQIPISI--SNSVLHSSLPAAKS------LGLNVEVSESGMCSLNF 140
Query: 150 REENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGL 209
R+E ++G EL+CKTL+AWE A+SPHLAAERE+ V DS V++ + KCL++ +
Sbjct: 141 RDEKTVTG-----APELLCKTLYAWEAAISPHLAAERENA-TVEDSVVLQMIEKCLKEEM 194
Query: 210 ESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTIS 269
E +SE K ++LC+VETAGGVASPGPSG+LQCDLYRPFRLPGILVGDGRLGGISGTI+
Sbjct: 195 ECGVKSE--KSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGDGRLGGISGTIA 252
Query: 270 AYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESH 329
AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+VPVLVLPP+P+D S+DL+EWF ES
Sbjct: 253 AYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDPSDDLIEWFVESD 312
Query: 330 NVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSV 389
VF +LK M+LA ER++RL M K AGE+FWWPFTQHKLV +E VTVIDSRCGENFS+
Sbjct: 313 GVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSI 372
Query: 390 YQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECA 449
Y+ N + QQFDACASWWTQGPD T Q ELAR+MGYTAARFGHVMFPENVYEPAL+CA
Sbjct: 373 YKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCA 432
Query: 450 ELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509
ELLL GVGKGWASR YFSDNGSTAIEIALKMAFRKF DH +F EK I +KV
Sbjct: 433 ELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDH----NFCEATEEEKHIVVKV 488
Query: 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569
+AL+GSYHGDTLGAMEAQAPSPYTGFLQQPWY+GRGLFLDPPTVF+ N W +SLPE
Sbjct: 489 IALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFS 548
Query: 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629
E+ TF SRDEIF + RD+S LA IYS+Y+S++L ++ G++ S +GALIIEPV+
Sbjct: 549 EIAPEYG--TFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVI 606
Query: 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK 689
H AGGMHMVDPLFQR+LV EC+NRKIPVIFDEVFTGFWRLGVETT +LLGC PDIAC+ K
Sbjct: 607 HGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAK 666
Query: 690 LLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTN 749
LLTGG++PLA TLAT+AVFDSF GDSKLKALLHGHSYSAHA+GCA AAK+I+WFKDP+TN
Sbjct: 667 LLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETN 726
Query: 750 HNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY 800
HNI + + LRELWD EL+QQISSH VQRVV +GTL A+EL+A N+GY
Sbjct: 727 HNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGY 777
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Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 6EC: 2 |
| >sp|Q6ZKV8|BIODA_ORYSJ Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial OS=Oryza sativa subsp. japonica GN=BIO3-BIO1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 882 bits (2278), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/794 (58%), Positives = 566/794 (71%), Gaps = 38/794 (4%)
Query: 17 LLRLFHHSTFHPQPLD-------LPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSS 69
+LRL H+ H +PL+ P F ++ ANT +GKTLVSAGL +S L SP+ S
Sbjct: 1 MLRLLRHARRHSTSSSSSAAAAAVPLTSPAFAVFGANTGVGKTLVSAGLVASLLASPSPS 60
Query: 70 ANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLS 129
+ YLKP+QTG+P DSD+RF+F + P+L LRR L L+ + L A+ L
Sbjct: 61 PST-VAYLKPLQTGFPDDSDARFVFDRAPAL-LRR-----LRLAGGGASTRLVASNHTL- 112
Query: 130 SRDLPFQPQKFNSEMYD-LNFREENRIS--GEEDSSVSELVCKTLFAWEEAVSPHLAAER 186
F S D L R++ ++ GEE LVC+T++AW E VSPHLAAER
Sbjct: 113 ----------FPSPAVDPLPERQDTVVNYGGEEGVEEKALVCRTVYAWREPVSPHLAAER 162
Query: 187 ESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLY 246
E G V D +V + + L + E G E+ ++ETAGGVASPGPSG+LQCDLY
Sbjct: 163 E-GMPVEDEEVRWLVDRWLAE--------EDGGGEVWKVLETAGGVASPGPSGTLQCDLY 213
Query: 247 RPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVP 306
R RLP +LVGDGRLGGIS T+SAYE+L LRGYDV +V+ ED GL N+ L+SYLR RVP
Sbjct: 214 RSSRLPAVLVGDGRLGGISSTLSAYETLLLRGYDVGSVILEDRGLSNDRFLLSYLRKRVP 273
Query: 307 VLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFT 366
V VLPP+P+D +DL +WF ES + F SLK+ + +S R+QRL M +++ L WWPFT
Sbjct: 274 VHVLPPIPEDPKDDLTDWFSESSSAFSSLKDSLQSFHSRRVQRLNSMQRKSKYLLWWPFT 333
Query: 367 QHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMG 426
QH LVP ++VTVIDSR GENFS Y+ K+K I QFDACASWWTQGPD+ LQIELARDMG
Sbjct: 334 QHDLVPVDSVTVIDSRFGENFSAYK-VKDKTIVPQFDACASWWTQGPDSNLQIELARDMG 392
Query: 427 YTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
Y AAR+GHVMFPENV+EPAL CAELLL GVGK WASR YFSDNGSTAIEIALKMAFRK++
Sbjct: 393 YAAARYGHVMFPENVHEPALRCAELLLGGVGKDWASRVYFSDNGSTAIEIALKMAFRKYA 452
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546
DH ++VD +E + KVLAL GSYHGDTLGAMEAQAPS YT FLQQPWYSGRGL
Sbjct: 453 CDHGIIVDSEKDIRSEGSVHFKVLALNGSYHGDTLGAMEAQAPSAYTSFLQQPWYSGRGL 512
Query: 547 FLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ 606
FLDPPTV++ N LSLP + + D F S E+F + RD+S A++Y SYISQ
Sbjct: 513 FLDPPTVYIKNKSANLSLPPSIMHDQLSSCDTCFSSLTEVFCKTRDTSSAANVYVSYISQ 572
Query: 607 NLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGF 666
L Q S I ALIIEPV+ AGGMH++DPLFQR+LVKEC+NRKIPVIFDEVFTGF
Sbjct: 573 QLSQYAMSNNSEHIAALIIEPVIQGAGGMHLIDPLFQRLLVKECKNRKIPVIFDEVFTGF 632
Query: 667 WRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSY 726
WRLGVE+ ++LLGC PDI+CY KL+TGG++PLAATLAT +F++F DSKL ALLHGHSY
Sbjct: 633 WRLGVESASELLGCFPDISCYAKLMTGGIVPLAATLATEPIFEAFRSDSKLTALLHGHSY 692
Query: 727 SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL 786
+AH +GC AA K+I+W+KDP TN NI +R L+ELWD L+ +SS V+RVV+LGTL
Sbjct: 693 TAHPMGCTAAVKAIQWYKDPSTNSNIDLDRMKLKELWDSALVNHLSSLPNVKRVVSLGTL 752
Query: 787 CAIELQAAGCNAGY 800
CAIEL+A G +AGY
Sbjct: 753 CAIELKAEGSDAGY 766
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Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|P22805|BIOA_LYSSH Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Lysinibacillus sphaericus GN=bioA PE=1 SV=1 | Back alignment and function description |
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Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 122/447 (27%), Positives = 196/447 (43%), Gaps = 64/447 (14%)
Query: 348 QRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACAS 407
Q L ++ ++ + W P +Q K EA I + GE +Y +Q +++ DA +S
Sbjct: 3 QVLTELQEKDLQHVWHPCSQMK--DYEAFPPIVIKKGEGVWLYDEQNQRYL----DAVSS 56
Query: 408 WWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFS 467
WW +++ + A H +F +EPA++ A+ L+ + + +F+
Sbjct: 57 WWV-NLFGHANPRISQALSEQAFTLEHTIFANFSHEPAIKLAQKLV-ALTPQSLQKVFFA 114
Query: 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ 527
DNGS+AIE+ALKM+F+ T K + + LAL +YHG+TLGA+
Sbjct: 115 DNGSSAIEVALKMSFQYHM-------------QTGKTQKKRFLALTDAYHGETLGALSVG 161
Query: 528 APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587
V +YN + P L + + D C F
Sbjct: 162 G------------------------VDLYNEVY---QPLLLDTVRAQGPDCFRCP----F 190
Query: 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647
DS I S++ L + I A+IIEP++ AA GM M ++ R L
Sbjct: 191 KHHPDSCHAQCI--SFVEDQLRMH-----HKEITAVIIEPLIQAAAGMKMYPAIYLRRLR 243
Query: 648 KECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAV 707
+ C + +I DE+ GF R G + PD C K LTGG +PL+ + TN V
Sbjct: 244 ELCTQYDVHLIADEIAVGFGRTGTLFACEQANISPDFMCLSKGLTGGYLPLSVVMTTNDV 303
Query: 708 FDSFVGD-SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLE 766
+ +F D + +KA LH HSY+ + L C A + + F++ Q + + +R+L
Sbjct: 304 YQAFYDDYATMKAFLHSHSYTGNTLACRVALEVLAIFEEEQYIDVVQDKGERMRKL---- 359
Query: 767 LIQQISSHRTVQRVVALGTLCAIELQA 793
++ S V +G + AIEL A
Sbjct: 360 ALEAFSDLPFVGEYRQVGFVGAIELVA 386
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Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Lysinibacillus sphaericus (taxid: 1421) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|P57379|BIOA_BUCAI Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=bioA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (336), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 114/433 (26%), Positives = 180/433 (41%), Gaps = 79/433 (18%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIE 420
W P++ P TVI ++ VY KN+ D +SWW +
Sbjct: 13 IWHPYSSMN-NPHPCYTVISAK-----GVYLKLKNR--KYMIDGMSSWWAAIHGYNHPV- 63
Query: 421 LARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKM 480
L + + + HVMF + PA+ L+ + + SD+GS AIE+A+KM
Sbjct: 64 LNKALKKQIRKMSHVMFGGITHPPAISLCRKLISLTPEKLDC-VFLSDSGSVAIEVAIKM 122
Query: 481 AFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPW 540
+ + LG+ L ++ YHGDT AM P Q +
Sbjct: 123 LIQYW--------QALGQKRKL------FLTIRNGYHGDTFSAMSVSDPK---NSFHQIY 165
Query: 541 YS--GRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598
++ + LF D P FY+ D+ D+ S
Sbjct: 166 HNLLPKHLFADAPV--------------------------------SSFYKNWDNEDILS 193
Query: 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658
+ +++ K++G +I+EP+V GGM+ P++ + + C + IPVI
Sbjct: 194 F------KKIIEKNSFKIAG----VILEPIVQGVGGMNFYHPMYLKQIKILCNHYSIPVI 243
Query: 659 FDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLK 718
FDE+ TGF R G + VPDI C GK +TGG I LAATL + + D+ + K+
Sbjct: 244 FDEIATGFGRTGKMFAFEHANVVPDILCLGKSITGGTITLAATLTSRHIADT-ISKGKVG 302
Query: 719 ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP-ERRILRELWDLELIQQISSHRTV 777
+HG +Y + L CA A +IK K Q ++ E+++ + L L +H V
Sbjct: 303 CFMHGPTYMGNPLACAVANANIKILKTNQWKIQVLNIEKQLFKSLMPL------INHPYV 356
Query: 778 QRVVALGTLCAIE 790
V LG + +E
Sbjct: 357 TDVRVLGAIGVVE 369
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Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (taxid: 107806) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|P44426|BIOA_HAEIN Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=bioA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (333), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 114/400 (28%), Positives = 180/400 (45%), Gaps = 78/400 (19%)
Query: 402 FDACASWWT-----QGP--DATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454
D +SWW P +A Q +LA+ H+MF ++PA+E A+LL+Q
Sbjct: 48 IDGMSSWWAALHGYNHPRLNAAAQNQLAK--------MSHIMFGGFTHDPAVELAQLLVQ 99
Query: 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKG 514
+ G + +F+D+GS A+E+A+KMA + + H K ++ K ++
Sbjct: 100 ILPNGL-DKIFFADSGSVAVEVAMKMAIQ---YQH-------AKGEVQR---QKFATIRS 145
Query: 515 SYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574
YHGDT AM P+ TG +S + P +N W
Sbjct: 146 GYHGDTWNAMSVCDPT--TGMHHLFHHSLPVQYFLPQPNIPFNESW-------------- 189
Query: 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634
C+ + + +LL+ G + I ALI+EPVV AGG
Sbjct: 190 ----NDCAIEPL-------------------ADLLKKKGNE----IAALILEPVVQGAGG 222
Query: 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694
M+ P + C+ I +IFDE+ TGF R G A+ G PDI C GK LTGG
Sbjct: 223 MYFYSPTYLVKAQALCKQYGILLIFDEIATGFGRTGKLFAAEHAGISPDIMCIGKALTGG 282
Query: 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754
+ L+A++ T + + + + K +HG ++ A+ L CA AA+SI+ + NI
Sbjct: 283 YLTLSASITTTEIAQT-ICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNI-- 339
Query: 755 ERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794
+RI L + + +S V+ V ALG + +E+++A
Sbjct: 340 -QRIESSL--KQQLSPLSEKDYVKEVRALGAIGVVEMKSA 376
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Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|Q2FVJ6|BIOA_STAA8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Staphylococcus aureus (strain NCTC 8325) GN=bioA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 126 bits (317), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 103/441 (23%), Positives = 186/441 (42%), Gaps = 65/441 (14%)
Query: 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQG 412
+ ++ E W PFTQ + +E +I+ G+ +Y NK++ D AS W
Sbjct: 7 LKQKDSEYVWHPFTQMGVYSKEEAIIIEK--GKGSYLYDTNGNKYL----DGYASLWVNV 60
Query: 413 PDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGST 472
+ L + + + H + P++E AE L++ + + ++SD GS
Sbjct: 61 HGHNNKY-LNKVIKKQLNKIAHSTLLGSSNIPSIELAEKLIE-ITPSNLRKVFYSDTGSA 118
Query: 473 AIEIALKMAFRKF-SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531
++EIA+KMA++ + + D E + K+ K + L YHGDT+GA+
Sbjct: 119 SVEIAIKMAYQYWKNIDRE---KYAKKN--------KFITLNHGYHGDTIGAVSVGGIKT 167
Query: 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591
+ + + + ++ P+ + N Y E + ++I E
Sbjct: 168 FHKIFKDLIFEN--IQVESPSFYRSN-----------YDTENEMMTAILTNIEQILIERN 214
Query: 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651
D I I+EP++ A G+ + F + + K C+
Sbjct: 215 DE--------------------------IAGFILEPLIQGATGLFVHPKGFLKEVEKLCK 248
Query: 652 NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
+ +I DEV GF R G + PDI C GK +TGG +PLAATL + ++++F
Sbjct: 249 KYDVLLICDEVAVGFGRTGKMFACNHEDVQPDIMCLGKAITGGYLPLAATLTSKKIYNAF 308
Query: 712 VGDSK-LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770
+ DS + HGH+Y+ + + C A ++I+ ++ + +I L + +
Sbjct: 309 LSDSHGVNTFFHGHTYTGNQIVCTVALENIRLYEKRKLLSHIETTSSTLE-----KQLHA 363
Query: 771 ISSHRTVQRVVALGTLCAIEL 791
+ HR V V G + +EL
Sbjct: 364 LKRHRNVGDVRGRGLMFGVEL 384
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Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Staphylococcus aureus (strain NCTC 8325) (taxid: 93061) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|O66557|BIOA_AQUAE Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Aquifex aeolicus (strain VF5) GN=bioA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 126 bits (316), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 115/435 (26%), Positives = 195/435 (44%), Gaps = 67/435 (15%)
Query: 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQ 418
E FW PFTQ K+ EE + + GE ++ K+I DA +S W
Sbjct: 15 EYFWHPFTQMKVYREEENLIFER--GEGVYLWDIYGRKYI----DAISSLWCN-VHGHNH 67
Query: 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478
+L + + H + PA+ A+ L++ +G ++ ++S++G+ A+EIA+
Sbjct: 68 PKLNNAVMKQLCKVAHTTTLGSSNVPAILLAKKLVEISPEG-LNKVFYSEDGAEAVEIAI 126
Query: 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQ 538
KMA+ + K K + + L +YHGDT+GA+ + G +
Sbjct: 127 KMAYHYWK----------NKGVKGKNV---FITLSEAYHGDTVGAVSVGGIELFHGTYKD 173
Query: 539 PWYSGRGLFLDPPTVFMY-NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLA 597
+ L P+ ++Y K+ PE + + +DI SR++I
Sbjct: 174 LLFKTIKL----PSPYLYCKEKYGELCPECTADLLKQLEDI-LKSREDIV---------- 218
Query: 598 SIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657
A+I+E + AA GM P F + + + + +
Sbjct: 219 ------------------------AVIMEAGIQAAAGMLPFPPGFLKGVRELTKKYDTLM 254
Query: 658 IFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-SK 716
I DEV TGF R G + G PD C GK +TGG +PLAATL T+ VF++F+G+ +
Sbjct: 255 IVDEVATGFGRTGTMFYCEQEGVSPDFMCLGKGITGGYLPLAATLTTDEVFNAFLGEFGE 314
Query: 717 LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776
K HGH+Y+ + L C+ A +++ F++ +T + P+ ++L+ E +Q+ +
Sbjct: 315 AKHFYHGHTYTGNNLACSVALANLEVFEEERTLEKLQPKIKLLK-----ERLQEFWELKH 369
Query: 777 VQRVVALGTLCAIEL 791
V V LG + IEL
Sbjct: 370 VGDVRQLGFMAGIEL 384
|
Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Aquifex aeolicus (strain VF5) (taxid: 224324) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|B7GHM5|BIOA_ANOFW Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=bioA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 116/443 (26%), Positives = 195/443 (44%), Gaps = 77/443 (17%)
Query: 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPD 414
+++ W PFTQ K E+ VI+S GE + + +D +S W
Sbjct: 13 EKSKTYLWLPFTQMKDY-EQHPLVIES--GEGIFLTDVNGKTY----YDGYSSLWLN-VH 64
Query: 415 ATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA----SRAYFSDNG 470
+ E+ + R H PA+ AE L++ W +R ++SD+G
Sbjct: 65 GHRKKEIDDAIRAQLERIAHSTLLGAANIPAIALAEKLIE-----WTPSHLTRVFYSDSG 119
Query: 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS 530
+ A+EIALK+AF+ + +G++ +K + L YHGDT+GA+ A
Sbjct: 120 AEAVEIALKIAFQYWRN--------IGENKKQKFV-----TLANGYHGDTVGAISVGAID 166
Query: 531 PYTGFLQQPWYSGRGLFLDP-PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYE 589
+ + ++ + P P V+ + S + P + +D + + +F E
Sbjct: 167 IFHTVYEPLMFTS---YKAPFPLVYRHPS----NDPNVV-------RDEALGALEALFAE 212
Query: 590 ERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE 649
+ I A+I+E ++ AGGMH++ + + + +
Sbjct: 213 HHEE--------------------------IAAMIVEGMIQGAGGMHVMPKGYLKGVEQL 246
Query: 650 CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFD 709
C+ I I DEV TGF R G + PDI K +TGG +P+AATL T A+++
Sbjct: 247 CRQYNILFIVDEVATGFGRTGKRFAIEHEDVQPDIMTVAKGITGGYLPIAATLTTEAIYE 306
Query: 710 SFVGD-SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELI 768
+F GD ++ K HGHSY+ + LGCAAA +I+ F+ + + E+ + + E +
Sbjct: 307 AFYGDYTEFKTFFHGHSYTGNQLGCAAALANIQIFERER-----LIEQIQQKATFVAEQL 361
Query: 769 QQISSHRTVQRVVALGTLCAIEL 791
+ V V LG +C IEL
Sbjct: 362 ASFNELNHVGDVRQLGLMCGIEL 384
|
Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Anoxybacillus flavithermus (strain DSM 21510 / WK1) (taxid: 491915) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|Q74CT9|BIOA_GEOSL Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=bioA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 118/446 (26%), Positives = 191/446 (42%), Gaps = 69/446 (15%)
Query: 348 QRLCDMPKRAGELFWWPFTQHKLVPE-EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACA 406
Q L D +R W PFTQ K E E V +++ GE + + +++ D A
Sbjct: 7 QTLRDWDRRH---IWHPFTQMKEWEESEPVVIVE---GEGSWIIDSEGKRYL----DGVA 56
Query: 407 SWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYF 466
+ WT + E+ + R H + A+ A+ L + G + ++
Sbjct: 57 AIWTN-VHGHCRREINEALKAQVDRLEHSTLLGLTNDRAVVLAKRLAEIAPPGLC-KVFY 114
Query: 467 SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA 526
SDNGSTA+E+ +KMAF+ + HE GK + I + +YHGDTLGA+
Sbjct: 115 SDNGSTAVEVGVKMAFQFWR--HE------GKPEKSRFI-----SFTSAYHGDTLGAVSV 161
Query: 527 QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEI 586
+ G + + + P + Y P C + +
Sbjct: 162 GGIDLFHGVFRPLLFP----TIQAPAPYCYRCPMGRDTP-------------AACGMECL 204
Query: 587 FYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646
++L I S+ +G + L+IEP+V AGGM + F + +
Sbjct: 205 -------TELERIMESH-------------AGEVAGLVIEPLVQGAGGMIVQPEGFLKGV 244
Query: 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNA 706
+ C I +I DEV GF R G G PDI K +T G +PLAATLAT
Sbjct: 245 RELCDRHDILMIADEVAVGFGRTGAMFACGREGITPDIMALSKGITAGYMPLAATLATQQ 304
Query: 707 VFDSFVGDSK-LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDL 765
V+D+F+G+ + +K HGH+++ + LGCA A S+ F+ + + + ++L+
Sbjct: 305 VYDAFLGEYREMKTFFHGHTFTGNPLGCAVALASLDLFESDRLLGKLPNKIKLLQ----- 359
Query: 766 ELIQQISSHRTVQRVVALGTLCAIEL 791
E ++ + V V G + A+EL
Sbjct: 360 EKLKGLIELEHVGDVRQCGMIAAVEL 385
|
Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) (taxid: 243231) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|Q8A7T2|BIOAB_BACTN Biotin biosynthesis bifunctional protein BioAB OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=bioB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 108/390 (27%), Positives = 170/390 (43%), Gaps = 71/390 (18%)
Query: 402 FDACASWW--TQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG 459
+ +SWW G + + + A+D + HVMF ++PA+E +LLL V
Sbjct: 362 IEGMSSWWCAVHGYNHPVLNQAAKDQ---LDKMSHVMFGGLTHDPAIELGKLLLPLVPPS 418
Query: 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519
+ +++D+GS A+E+ALKMA + + K + + ++ YHGD
Sbjct: 419 -MQKIFYADSGSVAVEVALKMAVQYWY-------------AAGKPDKNNFVTIRSGYHGD 464
Query: 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDIT 579
T AM P TG S + P ++ +W + D
Sbjct: 465 TWNAM--SVCDPVTGMHSLFGSSLPVRYFVPAPSSRFDGEW--------------NPDEI 508
Query: 580 FCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639
R+ I E+ S +LA ALI+EP+V AGGM
Sbjct: 509 IPLRETI---EKHSKELA------------------------ALILEPIVQGAGGMWFYH 541
Query: 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLA 699
P + R K C+ I +IFDE+ TGF R G + G PDI C GK LTGG + L+
Sbjct: 542 PQYLREAEKLCKEHDILLIFDEIATGFGRTGKLFAWEHAGVEPDIMCIGKALTGGYMTLS 601
Query: 700 ATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRIL 759
A LA+N + D+ + + KA +HG ++ + L CA A S++ D N+ +RI
Sbjct: 602 AVLASNQIADT-ISNHAPKAFMHGPTFMGNPLACAVACASVRLLLDSGWAENV---KRI- 656
Query: 760 RELWDLELIQQISSHRTVQRVVALGTLCAI 789
+ +L ++++ R +V + L AI
Sbjct: 657 ----EAQLKEELAPARKFPQVADVRILGAI 682
|
Catalyzes two activities which are involved in the biotine biosynthesis: the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism, and the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) (taxid: 226186) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 817 | ||||||
| 297796671 | 839 | mitochondrial bifunctional diaminopelarg | 0.929 | 0.904 | 0.692 | 0.0 | |
| 186532546 | 833 | adenosylmethionine-8-amino-7-oxononanoat | 0.916 | 0.899 | 0.699 | 0.0 | |
| 390980932 | 831 | Chain A, Structure Of Bifunctional Dapa | 0.930 | 0.914 | 0.691 | 0.0 | |
| 225446128 | 863 | PREDICTED: uncharacterized protein LOC10 | 0.917 | 0.869 | 0.700 | 0.0 | |
| 356550752 | 819 | PREDICTED: l-Lysine-8-amino-7-oxononanoa | 0.894 | 0.892 | 0.681 | 0.0 | |
| 390980930 | 831 | Chain A, Structure Of Selenomethionine S | 0.930 | 0.914 | 0.679 | 0.0 | |
| 449457131 | 852 | PREDICTED: bifunctional dethiobiotin syn | 0.959 | 0.920 | 0.655 | 0.0 | |
| 449510662 | 844 | PREDICTED: LOW QUALITY PROTEIN: bifuncti | 0.949 | 0.919 | 0.654 | 0.0 | |
| 357145329 | 825 | PREDICTED: adenosylmethionine-8-amino-7- | 0.933 | 0.924 | 0.589 | 0.0 | |
| 326517942 | 827 | predicted protein [Hordeum vulgare subsp | 0.909 | 0.898 | 0.598 | 0.0 |
| >gi|297796671|ref|XP_002866220.1| mitochondrial bifunctional diaminopelargonate synthetase [Arabidopsis lyrata subsp. lyrata] gi|297312055|gb|EFH42479.1| mitochondrial bifunctional diaminopelargonate synthetase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1075 bits (2779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/783 (69%), Positives = 635/783 (81%), Gaps = 24/783 (3%)
Query: 21 FHHSTFHPQP---LDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77
F+ + P P + LPL+HPT+ IWSANTSLGKTLVS G+++SFLL SS+ K +YL
Sbjct: 22 FNSTAVSPPPTHSIHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYL 81
Query: 78 KPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQP 137
KPIQTG+P DSDSRF+F+KL SLSLRR P L +SNS+L SSL AA+S L
Sbjct: 82 KPIQTGFPSDSDSRFVFSKLDSLSLRRQIP--LSISNSVLRSSLPAAES------LGLNV 133
Query: 138 QKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKV 197
+ ++ M +LNFREE ++G EL+CKTL+AWE A+SPHLAAERE+ + DS V
Sbjct: 134 EVSDTGMCNLNFREEKTVTG-----APELLCKTLYAWEAAISPHLAAERENA-TIEDSIV 187
Query: 198 IETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVG 257
+ + KCL++ +E S SE K ++LC+VETAGGVASPGPSG+LQCDLYRPFRLPGILVG
Sbjct: 188 LRMIEKCLKEEMECGSRSE--KSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVG 245
Query: 258 DGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDS 317
DGRLGGISGTI+AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+VPVLVLPP+P+D
Sbjct: 246 DGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDP 305
Query: 318 SNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVT 377
S+DL+EWF ES+ VF +LK M+LAY R++RL M K+AG++FWWPFTQHKLV EE VT
Sbjct: 306 SDDLIEWFVESNGVFKALKETMVLAYLGRLERLNSMAKQAGKVFWWPFTQHKLVHEETVT 365
Query: 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF 437
VIDSRCGENFS+Y+ N + QQFDACASWWTQGPD T Q ELAR+MGYTAARFGHVMF
Sbjct: 366 VIDSRCGENFSIYKASDNSSLTQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMF 425
Query: 438 PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
PENVYEPAL+CAELLL GVGKGWASR YFSDNGSTAIEIALKMAFRKF DH DF
Sbjct: 426 PENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDH----DFCE 481
Query: 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557
K EK I +KVLAL+GSYHGDTLGAMEAQAPSPYTGFLQQPWY+GRGLFLDPPTVF+ N
Sbjct: 482 KREEEKHIVVKVLALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSN 541
Query: 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617
W + LPE +S+I + TF RDEIF E RD++ LA IYS+Y+S++L ++ G++ S
Sbjct: 542 GAWNIFLPE-CFSEIAPEECGTFSIRDEIFDESRDATTLARIYSAYVSEHLQEDSGVRQS 600
Query: 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
+GALIIEPV+H AGGMHMVDPLFQR+LV EC+NRKIPVIFDEVFTGFWRLGVETTA+L
Sbjct: 601 AHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTAEL 660
Query: 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAA 737
L C PDIAC+ KLLTGG++PLA TLAT+AVFDSF GDSKLKALLHGHSYSAHA+GCA AA
Sbjct: 661 LDCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAA 720
Query: 738 KSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN 797
K+I+WFKDP+TNHNI + + LRELWD EL+QQIS H VQRVV LGTL A+EL+A N
Sbjct: 721 KAIQWFKDPETNHNITSQGKTLRELWDDELVQQISFHSAVQRVVVLGTLFALELKADASN 780
Query: 798 AGY 800
+GY
Sbjct: 781 SGY 783
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186532546|ref|NP_200567.2| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Arabidopsis thaliana] gi|391737955|sp|B0F481.1|BIODA_ARATH RecName: Full=Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial; AltName: Full=Bifunctional BIO3-BIO1 protein; Includes: RecName: Full=Dethiobiotin synthetase; AltName: Full=DTB synthetase; Short=DTBS; AltName: Full=Protein BIOTIN AUXOTROPH 3; Includes: RecName: Full=7,8-diamino-pelargonic acid aminotransferase; Short=DAPA AT; Short=DAPA aminotransferase; AltName: Full=7,8-diaminononanoate synthase; Short=DANS; AltName: Full=Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; AltName: Full=Diaminopelargonic acid synthase; AltName: Full=Protein BIOTIN AUXOTROPH 1; Flags: Precursor gi|158726301|gb|ABW80569.1| mitochondrial bifunctional diaminopelargonate synthase-dethiobiotin synthetase [Arabidopsis thaliana] gi|332009541|gb|AED96924.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Arabidopsis thaliana] gi|364285679|gb|AEW48251.1| bifunctional BIO3-BIO1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1074 bits (2777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/771 (69%), Positives = 626/771 (81%), Gaps = 22/771 (2%)
Query: 30 PLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSD 89
P LPL+HPT+ IWSANTSLGKTLVS G+++SFLL SS+ K +YLKPIQTG+P DSD
Sbjct: 29 PFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLKPIQTGFPSDSD 88
Query: 90 SRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNF 149
SRF+F+KL SLSLRR P S+ SNS+L SSL AAKS L + S M LNF
Sbjct: 89 SRFVFSKLDSLSLRRQIPISI--SNSVLHSSLPAAKS------LGLNVEVSESGMCSLNF 140
Query: 150 REENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGL 209
R+E ++G EL+CKTL+AWE A+SPHLAAERE+ V DS V++ + KCL++ +
Sbjct: 141 RDEKTVTG-----APELLCKTLYAWEAAISPHLAAERENA-TVEDSVVLQMIEKCLKEEM 194
Query: 210 ESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTIS 269
E +SE K ++LC+VETAGGVASPGPSG+LQCDLYRPFRLPGILVGDGRLGGISGTI+
Sbjct: 195 ECGVKSE--KSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGDGRLGGISGTIA 252
Query: 270 AYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESH 329
AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+VPVLVLPP+P+D S+DL+EWF ES
Sbjct: 253 AYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDPSDDLIEWFVESD 312
Query: 330 NVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSV 389
VF +LK M+LA ER++RL M K AGE+FWWPFTQHKLV +E VTVIDSRCGENFS+
Sbjct: 313 GVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSI 372
Query: 390 YQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECA 449
Y+ N + QQFDACASWWTQGPD T Q ELAR+MGYTAARFGHVMFPENVYEPAL+CA
Sbjct: 373 YKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCA 432
Query: 450 ELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509
ELLL GVGKGWASR YFSDNGSTAIEIALKMAFRKF DH +F EK I +KV
Sbjct: 433 ELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDH----NFCEATEEEKHIVVKV 488
Query: 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569
+AL+GSYHGDTLGAMEAQAPSPYTGFLQQPWY+GRGLFLDPPTVF+ N W +SLPE
Sbjct: 489 IALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFS 548
Query: 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629
E+ TF SRDEIF + RD+S LA IYS+Y+S++L ++ G++ S +GALIIEPV+
Sbjct: 549 EIAPEYG--TFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVI 606
Query: 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK 689
H AGGMHMVDPLFQR+LV EC+NRKIPVIFDEVFTGFWRLGVETT +LLGC PDIAC+ K
Sbjct: 607 HGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAK 666
Query: 690 LLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTN 749
LLTGG++PLA TLAT+AVFDSF GDSKLKALLHGHSYSAHA+GCA AAK+I+WFKDP+TN
Sbjct: 667 LLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETN 726
Query: 750 HNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY 800
HNI + + LRELWD EL+QQISSH VQRVV +GTL A+EL+A N+GY
Sbjct: 727 HNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGY 777
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|390980932|pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. gi|390980933|pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. gi|390980934|pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. gi|390980935|pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. gi|390980936|pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana Bound To 7-Keto 8-Amino Pelargonic Acid (Kapa) gi|390980937|pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana Bound To 7-Keto 8-Amino Pelargonic Acid (Kapa) gi|390980938|pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana Bound To Dethiobiotin (Dtb). gi|390980939|pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana Bound To Dethiobiotin (Dtb) | Back alignment and taxonomy information |
|---|
Score = 1073 bits (2776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/782 (69%), Positives = 629/782 (80%), Gaps = 22/782 (2%)
Query: 19 RLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78
R H + P LPL+HPT+ IWSANTSLGKTLVS G+++SFLL SS+ K +YLK
Sbjct: 16 RGSHMKSTSVSPFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLK 75
Query: 79 PIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQ 138
PIQTG+P DSDSRF+F+KL SLSLRR P S+ SNS+L SSL AAKS L +
Sbjct: 76 PIQTGFPSDSDSRFVFSKLDSLSLRRQIPISI--SNSVLHSSLPAAKS------LGLNVE 127
Query: 139 KFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVI 198
S M LNFR+E ++G EL+CKTL+AWE A+SPHLAAERE+ V DS V+
Sbjct: 128 VSESGMCSLNFRDEKTVTG-----APELLCKTLYAWEAAISPHLAAERENA-TVEDSVVL 181
Query: 199 ETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGD 258
+ + KCL++ +E +SE K ++LC+VETAGGVASPGPSG+LQCDLYRPFRLPGILVGD
Sbjct: 182 QMIEKCLKEEMECGVKSE--KSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGD 239
Query: 259 GRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSS 318
GRLGGISGTI+AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+VPVLVLPP+P+D S
Sbjct: 240 GRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDPS 299
Query: 319 NDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTV 378
+DL+EWF ES VF +LK M+LA ER++RL M K AGE+FWWPFTQHKLV +E VTV
Sbjct: 300 DDLIEWFVESDGVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFTQHKLVHQETVTV 359
Query: 379 IDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP 438
IDSRCGENFS+Y+ N + QQFDACASWWTQGPD T Q ELAR+MGYTAARFGHVMFP
Sbjct: 360 IDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFP 419
Query: 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498
ENVYEPAL+CAELLL GVGKGWASR YFSDNGSTAIEIALKMAFRKF DH +F
Sbjct: 420 ENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDH----NFCEA 475
Query: 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558
EK I +KV+AL+GSYHGDTLGAMEAQAPSPYTGFLQQPWY+GRGLFLDPPTVF+ N
Sbjct: 476 TEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNG 535
Query: 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618
W +SLPE E+ TF SRDEIF + RD+S LA IYS+Y+S++L ++ G++ S
Sbjct: 536 SWNISLPESFSEIAPEYG--TFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSA 593
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678
+GALIIEPV+H AGGMHMVDPLFQR+LV EC+NRKIPVIFDEVFTGFWRLGVETT +LL
Sbjct: 594 HVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELL 653
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAK 738
GC PDIAC+ KLLTGG++PLA TLAT+AVFDSF GDSKLKALLHGHSYSAHA+GCA AAK
Sbjct: 654 GCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAK 713
Query: 739 SIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA 798
+I+WFKDP+TNHNI + + LRELWD EL+QQISSH VQRVV +GTL A+EL+A N+
Sbjct: 714 AIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNS 773
Query: 799 GY 800
GY
Sbjct: 774 GY 775
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446128|ref|XP_002270551.1| PREDICTED: uncharacterized protein LOC100259784 [Vitis vinifera] gi|297735352|emb|CBI17792.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1070 bits (2766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/764 (70%), Positives = 621/764 (81%), Gaps = 14/764 (1%)
Query: 40 FQIWSANTSLGKTLVSAGLSSSFLLSP-TSSANKKFVYLKPIQTGYPHDSDSRFLFTKLP 98
+ IW++NT LGKTLVS GL+++ LLSP SS + KF+Y+KP+QTG+P DSDS F+F K
Sbjct: 55 YTIWASNTGLGKTLVSTGLAAATLLSPFPSSDSAKFIYIKPVQTGFPSDSDSAFVFRKFS 114
Query: 99 SLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGE 158
L LRR ++ SN +L +S AA++ L F + E+ DL EE R+ GE
Sbjct: 115 QLVLRRRPSFAVSASNHVLKASASAAEAVLG-----FGSEG-EGELRDLGAYEERRLLGE 168
Query: 159 E--DSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESE 216
E + SEL CKT++AW EA+SPHLA ERE GG V D ++E LG+CLR G SE
Sbjct: 169 EWAAGAASELTCKTMYAWREAISPHLAVERE-GGAVPDKVLLEVLGRCLRIG----SEDG 223
Query: 217 RGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL 276
RG+M++ +VETAGGVASPGPSG+LQCDLYRPFRLP ILVGDGRLGGISGTISAYESLKL
Sbjct: 224 RGRMDVWSVVETAGGVASPGPSGTLQCDLYRPFRLPAILVGDGRLGGISGTISAYESLKL 283
Query: 277 RGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLK 336
RGYDVVA+V EDHGLVNEVPL+SYL NRVPVLVLPP+PQD S++LMEWFD+S VF SLK
Sbjct: 284 RGYDVVAIVIEDHGLVNEVPLLSYLGNRVPVLVLPPVPQDPSDNLMEWFDKSQAVFSSLK 343
Query: 337 NIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNK 396
IML YSERIQR DMPKRAG++FWWPFTQHKLVPEE VTVIDSRCGENFSV++ Q N
Sbjct: 344 EIMLSVYSERIQRFHDMPKRAGDIFWWPFTQHKLVPEETVTVIDSRCGENFSVHKVQNND 403
Query: 397 FIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGV 456
FI QQFDACASWWTQGPDATLQIELARD+GY AARFGHVMFPENVYEPALECAELLL+GV
Sbjct: 404 FIAQQFDACASWWTQGPDATLQIELARDVGYAAARFGHVMFPENVYEPALECAELLLEGV 463
Query: 457 GKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSY 516
GKGWASR +FSDNGSTAIE+ALKMAFRKFS DH +++D +T K IE+KV+ALKGSY
Sbjct: 464 GKGWASRTFFSDNGSTAIEVALKMAFRKFSLDHGIILDSTDPNTIGKFIEVKVIALKGSY 523
Query: 517 HGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576
HGDTLGAMEAQAPS YTGFLQQPWY+G+GLFLDPPT+FM + W LSLPE + S+ ++ +
Sbjct: 524 HGDTLGAMEAQAPSSYTGFLQQPWYTGKGLFLDPPTIFMCDGIWKLSLPEGVQSEKLKQE 583
Query: 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636
++TF SR E F + RD S LA YSS+ISQ L GL+ G IGALIIEPVVH +GGMH
Sbjct: 584 ELTFQSRGEFFSKSRDGSSLAGSYSSFISQQLSAYSGLRGFGHIGALIIEPVVHGSGGMH 643
Query: 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVI 696
M+DPLFQR+LV EC++RKIPVIFDEVFTGFWRLG E+ ++LL C PDIAC+ KL+TGG+I
Sbjct: 644 MIDPLFQRVLVNECRSRKIPVIFDEVFTGFWRLGAESASELLCCQPDIACFAKLMTGGII 703
Query: 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756
PLAATLAT+AVF++F GDSKLKALLHGHSY+AHA+GC AA KSIKWFKDPQTN NI E
Sbjct: 704 PLAATLATDAVFNAFAGDSKLKALLHGHSYTAHAMGCTAAVKSIKWFKDPQTNSNITSEG 763
Query: 757 RILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY 800
R+LRELWD EL+ QISSH VQRVVALGTL A+ELQA G N GY
Sbjct: 764 RLLRELWDAELVHQISSHPAVQRVVALGTLFALELQAEGSNVGY 807
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550752|ref|XP_003543748.1| PREDICTED: l-Lysine-8-amino-7-oxononanoate aminotransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1050 bits (2716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/770 (68%), Positives = 613/770 (79%), Gaps = 39/770 (5%)
Query: 33 LPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLS-PTSSANKKFVYLKPIQTGYPHDSDSR 91
LPLSHP + IW +NT +GKTLVSAG++++FLLS PT S +F YLKP+QTG+P DSDSR
Sbjct: 29 LPLSHPIYLIWGSNTGVGKTLVSAGIAAAFLLSSPTPS---QFHYLKPLQTGFPSDSDSR 85
Query: 92 FLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFRE 151
F+F KL LSL RN L S+ ++ S S
Sbjct: 86 FVFNKLRQLSLIRNPHIPLSASHRVINVSPAVTAS------------------------- 120
Query: 152 ENRISGEED-SSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLE 210
N ++GEE EL+CKTL+AWEEAVSPHLAAERE G VV DS V+ETLG+CL D E
Sbjct: 121 -NPLAGEEGVGPPPELLCKTLYAWEEAVSPHLAAERE-GLVVKDSAVLETLGECLEDVAE 178
Query: 211 SESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISA 270
+ ER E+LC+VETAGGVASPGPSGSLQCDLYRPFR+P +LVGDGRLGGISGTISA
Sbjct: 179 CGAGKERS--EVLCVVETAGGVASPGPSGSLQCDLYRPFRIPAVLVGDGRLGGISGTISA 236
Query: 271 YESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESHN 330
YESLKLRGYDVVAVVFEDHGL+NE PLMSY+RN+VPVLVLPP+P+D NDLMEWF+ SH
Sbjct: 237 YESLKLRGYDVVAVVFEDHGLLNEGPLMSYMRNKVPVLVLPPIPKDPLNDLMEWFESSHY 296
Query: 331 VFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVY 390
+F +LK IML AY ERI++L DMP+ A ++ WWPFTQHKLVP+ VTVIDSRCGENFS++
Sbjct: 297 IFSNLKEIMLSAYFERIKKLHDMPREARDIIWWPFTQHKLVPDGGVTVIDSRCGENFSIF 356
Query: 391 QDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAE 450
+ QK + I QFDACASWWTQGPDA +Q ELAR+MGY AARFGHVMFPENV+EPAL CAE
Sbjct: 357 KVQKTEVIAPQFDACASWWTQGPDAIMQTELAREMGYAAARFGHVMFPENVHEPALNCAE 416
Query: 451 LLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVL 510
LLLQGVGKGWASR YFSDNGSTAIEIALKMAFRKFS DH ++V T E+ EL VL
Sbjct: 417 LLLQGVGKGWASRTYFSDNGSTAIEIALKMAFRKFSVDHGLIVHCHEDTTNERSTELMVL 476
Query: 511 ALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570
AL+ SYHGDTLGAMEAQAPS YTGFLQQPWY+GRGLFLDPP+VFM+NS W +S+PE +
Sbjct: 477 ALQRSYHGDTLGAMEAQAPSSYTGFLQQPWYTGRGLFLDPPSVFMHNSTWNVSIPEGYHL 536
Query: 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630
+ ++ K TF S DEIF++ RD S+LA++YSSYIS+ L G + S +GALI+EPV+
Sbjct: 537 ESLKGK--TFASPDEIFHKGRDKSELATVYSSYISKVL---SGFRGSNNVGALIMEPVIQ 591
Query: 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKL 690
AGGMHMVDPLFQR+LV EC++RKIPVIFDEVFTGFWRLGVET +L+ CVPDIAC+GKL
Sbjct: 592 GAGGMHMVDPLFQRVLVNECRSRKIPVIFDEVFTGFWRLGVETAVELIHCVPDIACFGKL 651
Query: 691 LTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNH 750
LTGG+IPLA TLATNAVFDSF+GDSKLKALLHGHSYSAHA+GCAAA KSI+WFKDP +N
Sbjct: 652 LTGGIIPLAVTLATNAVFDSFIGDSKLKALLHGHSYSAHAMGCAAAVKSIQWFKDPCSNP 711
Query: 751 NIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY 800
NI E R+LRELWD +++ +ISSH +QRVVALGTLCA+EL+A G NAGY
Sbjct: 712 NITSEGRLLRELWDDKMVHRISSHPAIQRVVALGTLCALELKAEGNNAGY 761
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|390980930|pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional Dapa Aminotransferase-Dethiobiotin Synthetase From Arabidopsis Thaliana In Its Apo Form. gi|390980931|pdb|4A0F|B Chain B, Structure Of Selenomethionine Substituted Bifunctional Dapa Aminotransferase-Dethiobiotin Synthetase From Arabidopsis Thaliana In Its Apo Form | Back alignment and taxonomy information |
|---|
Score = 1045 bits (2702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/782 (67%), Positives = 617/782 (78%), Gaps = 22/782 (2%)
Query: 19 RLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78
R H + P LPL+HPT+ IWSANTSLGKTLVS G+++SFLL SS+ K +YLK
Sbjct: 16 RGSHXKSTSVSPFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLK 75
Query: 79 PIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQ 138
PIQTG+P DSDSRF+F+KL SLSLRR P S+ SNS+L SSL AAKS L +
Sbjct: 76 PIQTGFPSDSDSRFVFSKLDSLSLRRQIPISI--SNSVLHSSLPAAKS------LGLNVE 127
Query: 139 KFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVI 198
S LNFR+E ++G EL+CKTL+AWE A+SPHLAAERE+ V DS V+
Sbjct: 128 VSESGXCSLNFRDEKTVTG-----APELLCKTLYAWEAAISPHLAAERENA-TVEDSVVL 181
Query: 199 ETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGD 258
+ + KCL++ E +SE K ++LC+VETAGGVASPGPSG+LQCDLYRPFRLPGILVGD
Sbjct: 182 QXIEKCLKEEXECGVKSE--KSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGD 239
Query: 259 GRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSS 318
GRLGGISGTI+AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+VPVLVLPP+P+D S
Sbjct: 240 GRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDPS 299
Query: 319 NDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTV 378
+DL+EWF ES VF +LK +LA ER++RL K AGE+FWWP+TQHKLV +E VTV
Sbjct: 300 DDLIEWFVESDGVFKALKETXVLANLERLERLNGXAKLAGEVFWWPYTQHKLVHQETVTV 359
Query: 379 IDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP 438
IDSRCGENFS+Y+ N + QQFDACASWWTQGPD T Q ELAR+ GYTAARFGHV FP
Sbjct: 360 IDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREXGYTAARFGHVXFP 419
Query: 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498
ENVYEPAL+CAELLL GVGKGWASR YFSDNGSTAIEIALK AFRKF DH +F
Sbjct: 420 ENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKXAFRKFCVDH----NFCEA 475
Query: 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558
EK I +KV+AL+GSYHGDTLGA EAQAPSPYTGFLQQPWY+GRGLFLDPPTVF+ N
Sbjct: 476 TEEEKHIVVKVIALRGSYHGDTLGAXEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNG 535
Query: 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618
W +SLPE E+ TF SRDEIF + RD+S LA IYS+Y+S++L ++ G++ S
Sbjct: 536 SWNISLPESFSEIAPEYG--TFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSA 593
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678
+GALIIEPV+H AGG H VDPLFQR+LV EC+NRKIPVIFDEVFTGFWRLGVETT +LL
Sbjct: 594 HVGALIIEPVIHGAGGXHXVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELL 653
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAK 738
GC PDIAC+ KLLTGG +PLA TLAT+AVFDSF GDSKLKALLHGHSYSAHA GCA AAK
Sbjct: 654 GCKPDIACFAKLLTGGXVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAXGCATAAK 713
Query: 739 SIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA 798
+I+WFKDP+TNHNI + + LRELWD EL+QQISSH VQRVV +GTL A+EL+A N+
Sbjct: 714 AIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNS 773
Query: 799 GY 800
GY
Sbjct: 774 GY 775
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457131|ref|XP_004146302.1| PREDICTED: bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1036 bits (2679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/802 (65%), Positives = 620/802 (77%), Gaps = 18/802 (2%)
Query: 1 MLRLRRHHYPDHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSS 60
MLRLRR+ + H +L + F + P T+ +W +NTS+GKTLVSAGL+S
Sbjct: 1 MLRLRRNFHLSRHP-LLFKPFSTAAPLPPLHLPLSHP-TYILWGSNTSVGKTLVSAGLAS 58
Query: 61 SFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSS 120
SFL S + S F+YLKPIQTG+P DSDSRF+F KL SL RR+ SL+ S+ +L +S
Sbjct: 59 SFLHSDSPS---NFLYLKPIQTGFPSDSDSRFVFHKLSSLYRRRHARLSLLASDHVLNAS 115
Query: 121 LFAAKSFLSSRDLPFQPQKFNSE--MYDLNFREENRISGEEDSSVSELVCKTLFAWEEAV 178
L S D SE M +L EE R+ GEE S L+CKT++AW+EAV
Sbjct: 116 LPVLNSITGCGD--------GSELAMCELGQYEEQRLVGEESGLGSRLICKTMYAWKEAV 167
Query: 179 SPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPS 238
SPHLAAERESG VV D+ VI++L CL GL ESE + +C+VETAGGVASPGPS
Sbjct: 168 SPHLAAERESG-VVDDALVIQSLQSCLNSGLGVNGESEGAETRAMCLVETAGGVASPGPS 226
Query: 239 GSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLM 298
GSLQCDLYR FRLP +LVGDGRLGGISGTISAYE+LKLRGYDV A++F D+GL NEV L
Sbjct: 227 GSLQCDLYRSFRLPCLLVGDGRLGGISGTISAYETLKLRGYDVAAIIFADNGLENEVVLS 286
Query: 299 SYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAG 358
S+LR+RVP+LVLPP+P D ++DLM+WFD S NVFDSLK IML AYS+R+ RL +MPK+A
Sbjct: 287 SHLRDRVPILVLPPIPADITDDLMDWFDNSQNVFDSLKEIMLSAYSKRLNRLREMPKKAK 346
Query: 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQ 418
+FWWPFTQHKLV +EAVTVIDSRCGENF+V++DQ ++F+ QQFDACASWWTQGPDA LQ
Sbjct: 347 SIFWWPFTQHKLVADEAVTVIDSRCGENFTVFKDQGDEFMTQQFDACASWWTQGPDAALQ 406
Query: 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478
ELA DMGY AARFGHVMFPENVYEPALECAELLL GVGKGWASR YFSDNGSTAIEIAL
Sbjct: 407 TELASDMGYAAARFGHVMFPENVYEPALECAELLLAGVGKGWASRVYFSDNGSTAIEIAL 466
Query: 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQ 538
KMAFRKFS DH + ++ + +VLAL GSYHGDTLGAMEAQAPS YTGFLQQ
Sbjct: 467 KMAFRKFSIDHGIHDAQECNADAQRNLPFQVLALNGSYHGDTLGAMEAQAPSCYTGFLQQ 526
Query: 539 PWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598
PWY+GRG+FLDPPTV+M+ KW LSLP L + + ++ F SRDE+F E+RD SDLA
Sbjct: 527 PWYTGRGIFLDPPTVYMHGGKWYLSLPVGLQPETLRLENAFFDSRDEVFDEKRDGSDLAE 586
Query: 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658
IYS+Y+SQ L + +GALI+EPV+ AGGMHMVDPLFQR+LVKECQ++KIPVI
Sbjct: 587 IYSAYLSQQLSNSSKSNSL--LGALIMEPVIQGAGGMHMVDPLFQRVLVKECQDKKIPVI 644
Query: 659 FDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLK 718
FDEVFTGFWRLG ET A+LL CVPDIAC+ KL+TGG+IPL+ATLA+N+VF+SF+GDSKL+
Sbjct: 645 FDEVFTGFWRLGTETAAELLHCVPDIACFAKLMTGGIIPLSATLASNSVFESFIGDSKLE 704
Query: 719 ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ 778
ALLHGHSYSAHALGC AAAKSIKWFK+ QTN NI E LRELWD L+ +ISSH V+
Sbjct: 705 ALLHGHSYSAHALGCTAAAKSIKWFKNSQTNLNINAEGTSLRELWDENLVYEISSHPAVK 764
Query: 779 RVVALGTLCAIELQAAGCNAGY 800
RVVALGTL A+ELQA G NAGY
Sbjct: 765 RVVALGTLFALELQADGSNAGY 786
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449510662|ref|XP_004163726.1| PREDICTED: LOW QUALITY PROTEIN: bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1020 bits (2638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/802 (65%), Positives = 614/802 (76%), Gaps = 26/802 (3%)
Query: 1 MLRLRRHHYPDHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSS 60
MLRLRR+ + H +L + F + P T+ +W +NTS+GKTLVSAGL+S
Sbjct: 1 MLRLRRNFHLSRHP-LLFKPFSTAAPLPPLHLPLSHP-TYILWGSNTSVGKTLVSAGLAS 58
Query: 61 SFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSS 120
SFL S + S F+YLKPIQTG+P DSDSRF+F KL SL RR+ SL+ S+ +L +S
Sbjct: 59 SFLHSDSPS---NFLYLKPIQTGFPSDSDSRFVFHKLSSLYRRRHARLSLLASDHVLNAS 115
Query: 121 LFAAKSFLSSRDLPFQPQKFNSE--MYDLNFREENRISGEEDSSVSELVCKTLFAWEEAV 178
L S D SE M +L EE R+ GEE S L+CKT++AW+EAV
Sbjct: 116 LPVLNSITGCGD--------GSELAMCELGQYEEQRLVGEESGLGSRLICKTMYAWKEAV 167
Query: 179 SPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPS 238
SPHLAAERESG VV D+ VI++L CL GL ESE + +C+VETAGGVASPGPS
Sbjct: 168 SPHLAAERESG-VVDDALVIQSLQSCLNSGLGVNGESEGAETRAMCLVETAGGVASPGPS 226
Query: 239 GSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLM 298
GSLQCDLYR FRLP +LVGDGRLGGISGTISAYE+LKLRGYDV A++F D+GL NEV L
Sbjct: 227 GSLQCDLYRSFRLPCLLVGDGRLGGISGTISAYETLKLRGYDVAAIIFADNGLENEVVLS 286
Query: 299 SYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAG 358
S+LR+RVP+LVLPP+P D ++DLM+WFD S NVFDSLK IML AYS+R+ RL +MPK A
Sbjct: 287 SHLRDRVPILVLPPIPADITDDLMDWFDNSQNVFDSLKEIMLSAYSKRLNRLREMPKXAK 346
Query: 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQ 418
+FWWPFTQHKLV +EAVTVIDSRCGENF+V++DQ ++F+ QQFDACASWWTQGPDA LQ
Sbjct: 347 SIFWWPFTQHKLVADEAVTVIDSRCGENFTVFKDQGDEFMTQQFDACASWWTQGPDAALQ 406
Query: 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478
ELA DMGY AARFGHVMFPENVYEPALECAELLL GVGKGWASR YFSDNGSTAIEIAL
Sbjct: 407 TELASDMGYAAARFGHVMFPENVYEPALECAELLLAGVGKGWASRVYFSDNGSTAIEIAL 466
Query: 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQ 538
KMAFRKFS DH + D + + EL VLAL GSYHGDTLGAMEAQAPS YTGFLQQ
Sbjct: 467 KMAFRKFSIDHGIH-DAQECNADAQRSELMVLALNGSYHGDTLGAMEAQAPSCYTGFLQQ 525
Query: 539 PWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598
PWY+GRG+FLDPPTV+M+ KW LSLP L + T + +F E+RD SDLA
Sbjct: 526 PWYTGRGIFLDPPTVYMHGGKWYLSLPVGLQPE-------TLRLENALFDEKRDGSDLAE 578
Query: 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658
IYS+Y+SQ L + +GALI+EPV+ AGGMHMVDPLFQR+LVKECQ++KIPVI
Sbjct: 579 IYSAYLSQQLSNSSKSNSL--LGALIMEPVIQGAGGMHMVDPLFQRVLVKECQDKKIPVI 636
Query: 659 FDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLK 718
FDEVFTGFWRLG ET A+LL CVPDIAC+ KL+TGG+IPL+ATLA+N+VF+SF+GDSKL+
Sbjct: 637 FDEVFTGFWRLGTETAAELLHCVPDIACFAKLMTGGIIPLSATLASNSVFESFIGDSKLE 696
Query: 719 ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ 778
ALLHGHSYSAHALGC AAAKSIKWFK+ QTN NI E LRELWD L+ +ISSH V+
Sbjct: 697 ALLHGHSYSAHALGCTAAAKSIKWFKNSQTNLNINAEGTSLRELWDENLVYEISSHPAVK 756
Query: 779 RVVALGTLCAIELQAAGCNAGY 800
RVVALGTL A+ELQA G NAGY
Sbjct: 757 RVVALGTLFALELQADGSNAGY 778
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357145329|ref|XP_003573605.1| PREDICTED: adenosylmethionine-8-amino-7-oxononanoate aminotransferase-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 917 bits (2371), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/803 (58%), Positives = 582/803 (72%), Gaps = 40/803 (4%)
Query: 14 RRILL-----RLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTS 68
RR+LL R + S+F LPL+ PTF ++ ANT +GKTLVSAGL++S L SPT+
Sbjct: 3 RRLLLAHARRRRHYSSSFSSA---LPLASPTFAVFGANTGVGKTLVSAGLAASLLRSPTA 59
Query: 69 SANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFL 128
S + +YLKP+QTG+P DSD+ FLF ++P+L LR + + L+ S L S
Sbjct: 60 SPSA-VLYLKPLQTGFPADSDAGFLFRRVPAL-LRPSTAARLVASLDTLSCSPSLEPPPP 117
Query: 129 SSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERES 188
S + F +GE ++ L C+TL+AW EAVSPHLA ERE
Sbjct: 118 SPEEAAFS------------------YAGEGETVRKILTCRTLYAWREAVSPHLAVERE- 158
Query: 189 GGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRP 248
G V D+ V L CL + G+ E+ ++ETAGGVASPGPSG+LQCDLYRP
Sbjct: 159 GMAVEDAHVRSRLAACL----VEGEDLGEGEGEVWKLIETAGGVASPGPSGTLQCDLYRP 214
Query: 249 FRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVL 308
FRLP ILVGDGRLGGIS T+SAYE+L LRGYD+ AV+ ED GL N++ L+SYLRNRVPVL
Sbjct: 215 FRLPTILVGDGRLGGISSTLSAYETLLLRGYDISAVILEDRGLSNDMFLLSYLRNRVPVL 274
Query: 309 VLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQH 368
VLPP+P+D S+DL +W ES +VF LK+ + +S RIQRL M +++ +L WWPFTQH
Sbjct: 275 VLPPIPEDPSDDLTDWLSESSSVFGLLKDALQSFHSRRIQRLNSMQRKSKDLLWWPFTQH 334
Query: 369 KLVPEEAVTVIDSRCGENFSVYQDQKNKFIG-QQFDACASWWTQGPDATLQIELARDMGY 427
LVP ++VTVIDSRCGE+FS Y+ + NK + QFDACASWWTQGPD+ LQ+ELARDMGY
Sbjct: 335 NLVPVDSVTVIDSRCGESFSTYKVKDNKMMMIPQFDACASWWTQGPDSNLQMELARDMGY 394
Query: 428 TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSF 487
A R+GHVMFPEN +EPAL CAELLL GVGK WASR Y+SDNGSTAIEIALKMAFRKFSF
Sbjct: 395 AAGRYGHVMFPENAHEPALRCAELLLGGVGKDWASRVYYSDNGSTAIEIALKMAFRKFSF 454
Query: 488 DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLF 547
DH +L+D T E+ I+LKVLAL+GSYHGDTLGAMEAQAPS YT FLQQPWYSGRGLF
Sbjct: 455 DHGILLDSDKSMTNERNIQLKVLALQGSYHGDTLGAMEAQAPSAYTSFLQQPWYSGRGLF 514
Query: 548 LDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQN 607
LDPPTVF+ N LSLP+ + + D S E+F RDSS A +YS+YISQ
Sbjct: 515 LDPPTVFIRNETCCLSLPQSIQHGHLSPGDKCIPSLAEVFCNTRDSSYAADLYSTYISQQ 574
Query: 608 LLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667
L + + + ALIIEPV+ AGGMHM+DPLFQR+LVKEC+NRKIPVIFDEVFTGFW
Sbjct: 575 LSEYSLSSNTEHVAALIIEPVIQGAGGMHMIDPLFQRLLVKECRNRKIPVIFDEVFTGFW 634
Query: 668 RLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYS 727
RLGVE+ ++LLGC+PDIACY KL+TGG++PLAAT+ T VF++F DSKL ALLHGHSY+
Sbjct: 635 RLGVESASELLGCLPDIACYAKLMTGGIVPLAATVTTEGVFEAFKSDSKLTALLHGHSYT 694
Query: 728 AHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLC 787
AHA+GC+AA K+I+WF+DP TN N+ +R+ L+ELWD L+ Q+SS V RVV+LGTLC
Sbjct: 695 AHAMGCSAAVKAIQWFRDPSTNLNLDLDRKRLKELWDGTLVNQLSSLPNVSRVVSLGTLC 754
Query: 788 AIELQAAGCNAGY------CLIE 804
AIEL+A G +AGY CLI+
Sbjct: 755 AIELKAEGSDAGYASLYARCLIQ 777
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326517942|dbj|BAK07223.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 900 bits (2327), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/770 (59%), Positives = 565/770 (73%), Gaps = 27/770 (3%)
Query: 33 LPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRF 92
LPLS PTF ++ ANT +GKTLVSAGL++S L S ++ +YLKP+QTG+P DSD+ F
Sbjct: 23 LPLSSPTFAVFGANTGVGKTLVSAGLAASLLRS-HAAFPSAVLYLKPLQTGFPDDSDAGF 81
Query: 93 LFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREE 152
L+ ++P+L LR + + L S L + S + F YD
Sbjct: 82 LYRRVPAL-LRPSHAAHLAASIDTLSPAPSVETQSPSREEAAFS--------YD------ 126
Query: 153 NRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESE 212
GE ++ L C+TL+AW EAVSPHLAAERE G V D+ V L CL +G
Sbjct: 127 ----GEGEAVRKLLACRTLYAWREAVSPHLAAERE-GMAVEDAHVRSLLAACLVEG---- 177
Query: 213 SESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272
+G+ ++ +VETAGGVASPGPSG+LQCDLYR FRLP ILVGDGRLGGIS T+SAYE
Sbjct: 178 ENLGKGEGDVWKLVETAGGVASPGPSGTLQCDLYRQFRLPTILVGDGRLGGISCTLSAYE 237
Query: 273 SLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVF 332
+L LRGYDV AV+ EDHGL N L+SYLRNRVPVLVLPP+P+D S+DL +WF ES +VF
Sbjct: 238 TLLLRGYDVSAVILEDHGLSNNKFLLSYLRNRVPVLVLPPIPEDPSDDLTDWFSESSSVF 297
Query: 333 DSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQD 392
L++ + + RIQRL M +++ +L WWPFTQH LVP + VTVIDSRCGE+FS Y+
Sbjct: 298 GLLEDALRSFHLTRIQRLNSMQRKSKDLLWWPFTQHNLVPVDCVTVIDSRCGESFSAYKV 357
Query: 393 QKNKFIG-QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAEL 451
+ NK + QFDACASWWTQGPD+ LQIELARDMGY AAR+GHVMFPEN +EPAL CAEL
Sbjct: 358 KDNKMMMIPQFDACASWWTQGPDSKLQIELARDMGYAAARYGHVMFPENAHEPALRCAEL 417
Query: 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE-KCIELKVL 510
LL G+GK WASR Y+SDNGSTAIEIALKMAFRKFS D +L+D T + I+LKVL
Sbjct: 418 LLGGIGKDWASRVYYSDNGSTAIEIALKMAFRKFSLDRGILLDSDKSIITNGRNIQLKVL 477
Query: 511 ALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570
ALKGSYHGDTLGAMEAQAPS YT FLQQPWYSGRGLFLDPPTVF+ N LSLP+ + +
Sbjct: 478 ALKGSYHGDTLGAMEAQAPSAYTSFLQQPWYSGRGLFLDPPTVFIKNGTCTLSLPQAIQN 537
Query: 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630
+ D F S E+F + RDSS A +YS+YISQ L + + I ALIIEPV+
Sbjct: 538 CHLSPGDKCFPSLAEVFCKTRDSSSAADLYSTYISQQLSEYSLSSNTEHIAALIIEPVIQ 597
Query: 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKL 690
AGGMHM+DPLFQR+LV EC++RKIPVIFDEVFTGFWRLGVE+ ++LLGC+PD+ACY KL
Sbjct: 598 GAGGMHMIDPLFQRVLVHECRDRKIPVIFDEVFTGFWRLGVESASELLGCLPDVACYAKL 657
Query: 691 LTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNH 750
+TGG++PLAAT+ T AVF++F DSKL ALLHGHSY+AHA+GC+AA K+I+WF+DP TN
Sbjct: 658 MTGGLVPLAATVTTEAVFEAFKSDSKLTALLHGHSYTAHAMGCSAAVKAIQWFRDPSTNS 717
Query: 751 NIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY 800
N+ + L+ELWD L+ Q+SS V+R+V+LGTLCAIELQA G +AGY
Sbjct: 718 NLDFDCMKLKELWDGTLVNQLSSLPNVKRIVSLGTLCAIELQAEGSDAGY 767
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 817 | ||||||
| TAIR|locus:2174532 | 833 | BIO1 "AT5G57590" [Arabidopsis | 0.916 | 0.899 | 0.651 | 9e-267 | |
| ASPGD|ASPL0000002022 | 787 | biA [Emericella nidulans (taxi | 0.477 | 0.495 | 0.398 | 5e-102 | |
| TIGR_CMR|NSE_0618 | 447 | NSE_0618 "adenosylmethionine-8 | 0.246 | 0.449 | 0.349 | 4.5e-34 | |
| TIGR_CMR|ECH_0666 | 426 | ECH_0666 "adenosylmethionine-8 | 0.210 | 0.403 | 0.363 | 5.5e-29 | |
| TIGR_CMR|GSU_1582 | 453 | GSU_1582 "adenosylmethionine-- | 0.206 | 0.373 | 0.355 | 1.6e-26 | |
| TIGR_CMR|CJE_0352 | 427 | CJE_0352 "adenosylmethionine-- | 0.200 | 0.384 | 0.354 | 2e-26 | |
| TIGR_CMR|BA_4341 | 462 | BA_4341 "adenosylmethionine--8 | 0.204 | 0.361 | 0.335 | 4.5e-26 | |
| UNIPROTKB|P0A4X6 | 437 | bioA "Adenosylmethionine-8-ami | 0.172 | 0.322 | 0.387 | 1.7e-25 | |
| TIGR_CMR|CPS_2593 | 446 | CPS_2593 "adenosylmethionine-8 | 0.199 | 0.365 | 0.352 | 7.4e-25 | |
| TIGR_CMR|APH_0482 | 423 | APH_0482 "adenosylmethionine-8 | 0.203 | 0.392 | 0.331 | 4.9e-24 |
| TAIR|locus:2174532 BIO1 "AT5G57590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2566 (908.3 bits), Expect = 9.0e-267, P = 9.0e-267
Identities = 502/771 (65%), Positives = 584/771 (75%)
Query: 30 PLDLPLSHPTFQIWSANTSLGKTLVSAGXXXXXXXXXXXXANKKFVYLKPIQTGYPHDSD 89
P LPL+HPT+ IWSANTSLGKTLVS G + K +YLKPIQTG+P DSD
Sbjct: 29 PFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLKPIQTGFPSDSD 88
Query: 90 SRFLFTKLPSLSLRRNFPXXXXXXXXXXXXXXXXXXXXXXXRDLPFQPQKFNSEMYDLNF 149
SRF+F+KL SLSLRR P + L + S M LNF
Sbjct: 89 SRFVFSKLDSLSLRRQIPISISNSVLHSSLPAA--------KSLGLNVEVSESGMCSLNF 140
Query: 150 REENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGL 209
R+E ++G EL+CKTL+AWE A+SPHLAAERE+ V DS V++ + KCL++ +
Sbjct: 141 RDEKTVTG-----APELLCKTLYAWEAAISPHLAAERENA-TVEDSVVLQMIEKCLKEEM 194
Query: 210 ESESESERGKMEILCIVETXXXXXXXXXXXXLQCDLYRPFRLPGILVGDGRLGGISGTIS 269
E +SE K ++LC+VET LQCDLYRPFRLPGILVGDGRLGGISGTI+
Sbjct: 195 ECGVKSE--KSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGDGRLGGISGTIA 252
Query: 270 AYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRXXXXXXXXXXQDSSNDLMEWFDESH 329
AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+ +D S+DL+EWF ES
Sbjct: 253 AYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDPSDDLIEWFVESD 312
Query: 330 NVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSV 389
VF +LK M+LA ER++RL M K AGE+FWWPFTQHKLV +E VTVIDSRCGENFS+
Sbjct: 313 GVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSI 372
Query: 390 YQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECA 449
Y+ N + QQFDACASWWTQGPD T Q ELAR+MGYTAARFGHVMFPENVYEPAL+CA
Sbjct: 373 YKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCA 432
Query: 450 ELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509
ELLL GVGKGWASR YFSDNGSTAIEIALKMAFRKF DH +F EK I +KV
Sbjct: 433 ELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDH----NFCEATEEEKHIVVKV 488
Query: 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569
+AL+GSYHGDTLGAMEAQAPSPYTGFLQQPWY+GRGLFLDPPTVF+ N W +SLPE +
Sbjct: 489 IALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPE-SF 547
Query: 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629
S+I TF SRDEIF + RD+S LA IYS+Y+S++L ++ G++ S +GALIIEPV+
Sbjct: 548 SEIAPEYG-TFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVI 606
Query: 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK 689
H AGGMHMVDPLFQR+LV EC+NRKIPVIFDEVFTGFWRLGVETT +LLGC PDIAC+ K
Sbjct: 607 HGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAK 666
Query: 690 LLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTN 749
LLTGG++PLA TLAT+AVFDSF GDSKLKALLHGHSYSAHA+GCA AAK+I+WFKDP+TN
Sbjct: 667 LLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETN 726
Query: 750 HNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY 800
HNI + + LRELWD EL+QQISSH VQRVV +GTL A+EL+A N+GY
Sbjct: 727 HNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGY 777
|
|
| ASPGD|ASPL0000002022 biA [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 715 (256.8 bits), Expect = 5.0e-102, Sum P(3) = 5.0e-102
Identities = 174/437 (39%), Positives = 239/437 (54%)
Query: 334 SLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVY--- 390
SL + ++L +R++ L +M RA + W+PFTQH + + +T IDS + F Y
Sbjct: 245 SLLDELVLKNKQRVEYLDEMASRAQKTIWYPFTQHHGMAAKDITPIDSAYDDFFQTYVTA 304
Query: 391 -QDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECA 449
+ + + FD ASWWTQG LA Y A R+GHVMFP N++EPAL A
Sbjct: 305 DRSAQQGRLQATFDGSASWWTQGLGHG-NPGLALSAAYAAGRYGHVMFPGNIHEPALALA 363
Query: 450 ELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509
E LL+ V + +++DNGST +E+ALKM R D G D +++ ++ +
Sbjct: 364 ESLLKTVDNPRLQKVFYTDNGSTGMEVALKMGLR-------AACDRYGWDASKE--QINI 414
Query: 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569
L LKGSYHGDT+G M+ PS Y ++ WY GRG + D P V M W + +P L
Sbjct: 415 LGLKGSYHGDTIGVMDCSEPSTYNQRVE--WYRGRGHWFDFPLVKMSQGVWQVEVPATLQ 472
Query: 570 SKIVEHKDITFCSRDEIF-YEERDSSDLASIYSSYISQN---LLQNPGLKVSGCIGALII 625
+ + ++ F S D +F E R SD Y YI + L+ G K GALI+
Sbjct: 473 ASLGGNQQ--FSSLDAVFDVESRVRSDAGQRYRKYILETIERLVTQEGKK----FGALIM 526
Query: 626 EPVVHAAGGMHMVDPLFQRILVKECQ------NRK---------------IPVIFDEVFT 664
EP++ AGGM DPLFQR L + NR +PVIFDEVFT
Sbjct: 527 EPIILGAGGMLFCDPLFQRCLADVVRGNPQLFNRGRLTEPQPQTDLSWSGLPVIFDEVFT 586
Query: 665 GFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGH 724
G +RLG +++A LG PDIA KLLTGG++PL TLA+N +F++F K ALLHGH
Sbjct: 587 GLYRLGRKSSASFLGVNPDIAVNAKLLTGGLVPLCTTLASNEIFNAFTSPEKRDALLHGH 646
Query: 725 SYSAHALGCAAAAKSIK 741
SY+AHA+GC A S++
Sbjct: 647 SYTAHAVGCQVALDSLR 663
|
|
| TIGR_CMR|NSE_0618 NSE_0618 "adenosylmethionine-8-amino-7-oxononanoate aminotransferase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] | Back alignment and assigned GO terms |
|---|
Score = 280 (103.6 bits), Expect = 4.5e-34, Sum P(2) = 4.5e-34
Identities = 74/212 (34%), Positives = 110/212 (51%)
Query: 606 QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG 665
QN L+ +V+G I EP+V AGGM M + VK + I IFDE+ TG
Sbjct: 204 QNFLEQNLNRVAG----FIAEPLVQGAGGMRMCRYKYLEQCVKLFKEYGILTIFDEIMTG 259
Query: 666 FWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHS 725
F+R G +D + PDI C K LTGG +PL+ T+ T V+++F+ D+ AL+H HS
Sbjct: 260 FYRTGKMFASDYILSKPDILCLSKGLTGGFLPLSLTITTERVYNAFLSDNFSSALIHSHS 319
Query: 726 YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRE-LWDLEL-IQQISSHRTVQRVVAL 783
Y+ + LGCAAA S++ K T I ++ R + DL+L + +I +RV
Sbjct: 320 YTGNPLGCAAAIASLELLKSTSTLDKIAKIEQLHRSFICDLKLTLPEIIK---AERVC-- 374
Query: 784 GTLCAIELQAAGCNAGYCLIELFLYNFLTTGM 815
GT+ A L + CN + + F+ G+
Sbjct: 375 GTIVAFNLFSEECNYNHTIAVKLREIFMKEGL 406
|
|
| TIGR_CMR|ECH_0666 ECH_0666 "adenosylmethionine-8-amino-7-oxononanoate aminotransferase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 246 (91.7 bits), Expect = 5.5e-29, Sum P(2) = 5.5e-29
Identities = 65/179 (36%), Positives = 101/179 (56%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A+I+EP++ AAGGM + + + + ++ + I DEV TGF RLG +
Sbjct: 203 VAAIILEPILQAAGGMLIHSASTVKKICEIARDNNMLFIADEVATGFGRLGTMFGCNQAD 262
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
VPDI GK LTGG LAATL T V+++F+ D+ A +HG ++ A+AL CAAA S
Sbjct: 263 IVPDIMVIGKALTGGFCTLAATLTTEEVYNAFLSDNIDDAFMHGPTFMANALACAAANAS 322
Query: 740 IKWFKDPQTNHNI-IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN 797
+ F++ N+ + E +++ EL E+ +Q+S + T RV G IEL++ N
Sbjct: 323 LDLFENQDLIQNVSLIENQLISEL---EIFRQLS-YVTDIRVK--GATGIIELESGLIN 375
|
|
| TIGR_CMR|GSU_1582 GSU_1582 "adenosylmethionine--8-amino-7-oxononanoate aminotransferase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 243 (90.6 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 63/177 (35%), Positives = 98/177 (55%)
Query: 617 SGCIGALIIEPVVHAAGGMHMVDPL-FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675
+G + L+IEP+V AGGM +V P F + + + C I +I DEV GF R G
Sbjct: 215 AGEVAGLVIEPLVQGAGGM-IVQPEGFLKGVRELCDRHDILMIADEVAVGFGRTGAMFAC 273
Query: 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-LKALLHGHSYSAHALGCA 734
G PDI K +T G +PLAATLAT V+D+F+G+ + +K HGH+++ + LGCA
Sbjct: 274 GREGITPDIMALSKGITAGYMPLAATLATQQVYDAFLGEYREMKTFFHGHTFTGNPLGCA 333
Query: 735 AAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
A S+ F+ + + + ++L+E L+ + ++ H V V G + A+EL
Sbjct: 334 VALASLDLFESDRLLGKLPNKIKLLQE--KLKGLIELE-H--VGDVRQCGMIAAVEL 385
|
|
| TIGR_CMR|CJE_0352 CJE_0352 "adenosylmethionine--8-amino-7-oxononanoate aminotransferase" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 228 (85.3 bits), Expect = 2.0e-26, Sum P(2) = 2.0e-26
Identities = 61/172 (35%), Positives = 85/172 (49%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I A I+EP+V AG MHM + F +K C + VIFDE+ GF R G T L
Sbjct: 203 ICAFILEPLVQCAGNMHMYEAGFIDEAIKLCHKFGVQVIFDEIAVGFGRTG--TLFALHQ 260
Query: 680 CV--PDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-SKLKALLHGHSYSAHALGCAAA 736
C PD C K +TGG +PL+ L + ++++F KA LH HSY+ + L CAAA
Sbjct: 261 CKQSPDFICLSKGITGGFMPLSVVLTRDEIYNAFYDTYESQKAFLHSHSYTGNTLACAAA 320
Query: 737 AKSIKWFKDPQ--TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL 786
+ F+D + I+ E I +E LE + + RT + A L
Sbjct: 321 NAVLDIFEDENILVKNQILSEF-IKKEFSRLEKFDFLGNFRTCGMISAFDIL 371
|
|
| TIGR_CMR|BA_4341 BA_4341 "adenosylmethionine--8-amino-7-oxononanoate aminotransferase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 226 (84.6 bits), Expect = 4.5e-26, Sum P(2) = 4.5e-26
Identities = 58/173 (33%), Positives = 93/173 (53%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I A+I+EP++ AGGM + + R L C + I DEV TGF R G +
Sbjct: 226 IAAIIVEPLMQGAGGMITMPKGYLRGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHEN 285
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-SKLKALLHGHSYSAHALGCAAAAK 738
PDI GK LTGG +P+A T+ T+ ++++F+G + K HGHSY+ + LGCA A
Sbjct: 286 VTPDILTAGKGLTGGYLPVAITVTTDEIYNAFLGSYEEQKTFFHGHSYTGNPLGCAVAIA 345
Query: 739 SIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
+++ ++ +TN +I E E +L +++ + + V + G + IEL
Sbjct: 346 NLELYE--KTN--LIEEVARKTEYVATQL-EELFACKHVGDIRQCGLMVGIEL 393
|
|
| UNIPROTKB|P0A4X6 bioA "Adenosylmethionine-8-amino-7-oxononanoate aminotransferase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 244 (91.0 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 57/147 (38%), Positives = 80/147 (54%)
Query: 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654
D YS+ L Q+ +G + A+++EPVV AGGM DP + L C+ +
Sbjct: 194 DYDPAYSAAFEAQLAQH-----AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYE 248
Query: 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD 714
+ +IFDE+ TGF R G AD G PDI C GK LTGG + LAATL T V + +
Sbjct: 249 VLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHT-ISA 307
Query: 715 SKLKALLHGHSYSAHALGCAAAAKSIK 741
AL+HG ++ A+ L CA + S++
Sbjct: 308 GAAGALMHGPTFMANPLACAVSVASVE 334
|
|
| TIGR_CMR|CPS_2593 CPS_2593 "adenosylmethionine-8-amino-7-oxononanoate aminotransferase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 221 (82.9 bits), Expect = 7.4e-25, Sum P(2) = 7.4e-25
Identities = 61/173 (35%), Positives = 82/173 (47%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I A IIEP+V GGM P + + C + +I DE+ TGF R G + G
Sbjct: 222 IAAFIIEPIVQGTGGMRFYHPEYLKACRLLCDKYDVLLIVDEIATGFGRTGKLFACEWAG 281
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
PDI C GK LTGG I LAATL T + + + + +HG ++ +AL CA A S
Sbjct: 282 INPDIMCLGKTLTGGYITLAATLCTTHIAQT-ISEGAAGCFMHGPTFMGNALACAVANAS 340
Query: 740 IKWF--KDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIE 790
I D Q+ I E ++ L LE H V+ LG++ AIE
Sbjct: 341 IDLLLENDWQSQVQAI-ENTLVSHLKPLE------KHARVKDTRVLGSIGAIE 386
|
|
| TIGR_CMR|APH_0482 APH_0482 "adenosylmethionine-8-amino-7-oxononanoate aminotransferase" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
|---|
Score = 235 (87.8 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 56/169 (33%), Positives = 88/169 (52%)
Query: 608 LLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667
LLQ ++ + A+I+EP++ AAGGM + P L K + +I I DEV TGF+
Sbjct: 188 LLQQKIESIADKVAAIIVEPLLQAAGGMVIYPPHVLSTLRKIAKENEILFIADEVATGFY 247
Query: 668 RLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYS 727
RLG + PDI GK L+GG PL+A + ++ + + F+ + +HG+++
Sbjct: 248 RLGTSFACEQASIQPDIMVIGKALSGGTCPLSAAVVSSNISELFISGGE--TFMHGNTFM 305
Query: 728 AHALGCAAAAKSIKWFKDPQTNHNIIPERRILR-ELWDLELIQQISSHR 775
AH L CAAA S+ F + RIL+ EL +L + + + R
Sbjct: 306 AHPLSCAAANASLDLFAGESYTQKVSGIERILKAELEELHALDYVCNVR 354
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B0F481 | BIODA_ARATH | 2, ., 6, ., 1, ., 6, 2 | 0.6990 | 0.9167 | 0.8991 | yes | no |
| Q6ZKV8 | BIODA_ORYSJ | 2, ., 6, ., 1, ., 6, 2 | 0.5831 | 0.9253 | 0.9208 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.6.1 | LOW CONFIDENCE prediction! |
| 3rd Layer | 6.3.3.3 | LOW CONFIDENCE prediction! |
| 3rd Layer | 6.3.3 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 817 | |||
| PLN02974 | 817 | PLN02974, PLN02974, adenosylmethionine-8-amino-7-o | 0.0 | |
| TIGR00508 | 417 | TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon | 1e-72 | |
| PRK05964 | 423 | PRK05964, PRK05964, adenosylmethionine--8-amino-7- | 5e-67 | |
| COG0161 | 449 | COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon | 3e-61 | |
| cd00610 | 413 | cd00610, OAT_like, Acetyl ornithine aminotransfera | 1e-43 | |
| PRK08742 | 472 | PRK08742, PRK08742, adenosylmethionine--8-amino-7- | 1e-42 | |
| pfam00202 | 338 | pfam00202, Aminotran_3, Aminotransferase class-III | 9e-40 | |
| PRK07030 | 466 | PRK07030, PRK07030, adenosylmethionine--8-amino-7- | 3e-39 | |
| PRK06916 | 460 | PRK06916, PRK06916, adenosylmethionine--8-amino-7- | 1e-36 | |
| PRK06173 | 429 | PRK06173, PRK06173, adenosylmethionine--8-amino-7- | 8e-36 | |
| PRK05630 | 422 | PRK05630, PRK05630, adenosylmethionine--8-amino-7- | 7e-33 | |
| PRK07986 | 428 | PRK07986, PRK07986, adenosylmethionine--8-amino-7- | 3e-31 | |
| PRK07481 | 449 | PRK07481, PRK07481, hypothetical protein; Provisio | 4e-26 | |
| COG0160 | 447 | COG0160, GabT, 4-aminobutyrate aminotransferase an | 1e-23 | |
| COG4992 | 404 | COG4992, ArgD, Ornithine/acetylornithine aminotran | 3e-21 | |
| PRK13360 | 442 | PRK13360, PRK13360, omega amino acid--pyruvate tra | 2e-20 | |
| PRK09221 | 445 | PRK09221, PRK09221, beta alanine--pyruvate transam | 4e-20 | |
| PRK02627 | 396 | PRK02627, PRK02627, acetylornithine aminotransfera | 2e-19 | |
| PRK06943 | 453 | PRK06943, PRK06943, adenosylmethionine--8-amino-7- | 2e-18 | |
| PRK06917 | 447 | PRK06917, PRK06917, hypothetical protein; Provisio | 3e-18 | |
| TIGR00707 | 379 | TIGR00707, argD, transaminase, acetylornithine/suc | 4e-18 | |
| pfam13500 | 197 | pfam13500, AAA_26, AAA domain | 2e-17 | |
| PRK07480 | 456 | PRK07480, PRK07480, putative aminotransferase; Val | 4e-16 | |
| PRK08088 | 425 | PRK08088, PRK08088, 4-aminobutyrate aminotransfera | 1e-15 | |
| PRK07036 | 466 | PRK07036, PRK07036, hypothetical protein; Provisio | 2e-15 | |
| PRK06062 | 451 | PRK06062, PRK06062, hypothetical protein; Provisio | 2e-15 | |
| PRK05769 | 441 | PRK05769, PRK05769, 4-aminobutyrate aminotransfera | 6e-15 | |
| PRK07482 | 461 | PRK07482, PRK07482, hypothetical protein; Provisio | 1e-14 | |
| PRK07678 | 451 | PRK07678, PRK07678, aminotransferase; Validated | 2e-14 | |
| PRK07483 | 443 | PRK07483, PRK07483, hypothetical protein; Provisio | 4e-14 | |
| PRK08117 | 433 | PRK08117, PRK08117, 4-aminobutyrate aminotransfera | 5e-14 | |
| PLN02760 | 504 | PLN02760, PLN02760, 4-aminobutyrate:pyruvate trans | 1e-13 | |
| PTZ00125 | 400 | PTZ00125, PTZ00125, ornithine aminotransferase-lik | 3e-13 | |
| TIGR03372 | 442 | TIGR03372, putres_am_tran, putrescine aminotransfe | 3e-13 | |
| PRK06105 | 460 | PRK06105, PRK06105, aminotransferase; Provisional | 4e-13 | |
| PRK11522 | 459 | PRK11522, PRK11522, putrescine--2-oxoglutarate ami | 6e-13 | |
| PRK06082 | 459 | PRK06082, PRK06082, 4-aminobutyrate aminotransfera | 1e-12 | |
| PRK06541 | 460 | PRK06541, PRK06541, hypothetical protein; Provisio | 5e-11 | |
| TIGR00713 | 423 | TIGR00713, hemL, glutamate-1-semialdehyde-2,1-amin | 3e-10 | |
| PRK00090 | 222 | PRK00090, bioD, dithiobiotin synthetase; Reviewed | 3e-10 | |
| COG0001 | 432 | COG0001, HemL, Glutamate-1-semialdehyde aminotrans | 6e-10 | |
| PLN02624 | 474 | PLN02624, PLN02624, ornithine-delta-aminotransfera | 7e-10 | |
| TIGR03246 | 397 | TIGR03246, arg_catab_astC, succinylornithine trans | 9e-10 | |
| PLN00144 | 382 | PLN00144, PLN00144, acetylornithine transaminase | 1e-09 | |
| TIGR00700 | 420 | TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf | 2e-09 | |
| TIGR01885 | 401 | TIGR01885, Orn_aminotrans, ornithine aminotransfer | 3e-09 | |
| PRK01278 | 389 | PRK01278, argD, acetylornithine transaminase prote | 8e-09 | |
| PRK06943 | 453 | PRK06943, PRK06943, adenosylmethionine--8-amino-7- | 1e-08 | |
| PRK07495 | 425 | PRK07495, PRK07495, 4-aminobutyrate aminotransfera | 2e-08 | |
| PRK00062 | 426 | PRK00062, PRK00062, glutamate-1-semialdehyde amino | 2e-08 | |
| PRK05093 | 403 | PRK05093, argD, bifunctional N-succinyldiaminopime | 2e-08 | |
| PRK04260 | 375 | PRK04260, PRK04260, acetylornithine aminotransfera | 3e-08 | |
| PRK06918 | 451 | PRK06918, PRK06918, 4-aminobutyrate aminotransfera | 5e-08 | |
| PRK12403 | 460 | PRK12403, PRK12403, putative aminotransferase; Pro | 6e-08 | |
| PRK12381 | 406 | PRK12381, PRK12381, bifunctional succinylornithine | 1e-07 | |
| PRK05965 | 459 | PRK05965, PRK05965, hypothetical protein; Provisio | 2e-07 | |
| COG0132 | 223 | COG0132, BioD, Dethiobiotin synthetase [Coenzyme m | 2e-07 | |
| PRK02936 | 377 | PRK02936, argD, acetylornithine aminotransferase; | 2e-07 | |
| PRK03244 | 398 | PRK03244, argD, acetylornithine aminotransferase; | 2e-07 | |
| pfam13500 | 197 | pfam13500, AAA_26, AAA domain | 4e-07 | |
| TIGR00347 | 166 | TIGR00347, bioD, dethiobiotin synthase | 4e-07 | |
| PRK04073 | 396 | PRK04073, rocD, ornithine--oxo-acid transaminase; | 5e-07 | |
| PRK03715 | 395 | PRK03715, argD, acetylornithine transaminase prote | 6e-07 | |
| PRK07483 | 443 | PRK07483, PRK07483, hypothetical protein; Provisio | 1e-06 | |
| PRK00615 | 433 | PRK00615, PRK00615, glutamate-1-semialdehyde amino | 1e-06 | |
| PRK08360 | 443 | PRK08360, PRK08360, 4-aminobutyrate aminotransfera | 1e-06 | |
| PRK00854 | 401 | PRK00854, rocD, ornithine--oxo-acid transaminase; | 2e-06 | |
| PRK06058 | 443 | PRK06058, PRK06058, 4-aminobutyrate aminotransfera | 3e-06 | |
| PLN02482 | 474 | PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-a | 4e-05 | |
| PRK12389 | 428 | PRK12389, PRK12389, glutamate-1-semialdehyde amino | 5e-05 | |
| PRK06777 | 421 | PRK06777, PRK06777, 4-aminobutyrate aminotransfera | 7e-05 | |
| PRK06541 | 460 | PRK06541, PRK06541, hypothetical protein; Provisio | 1e-04 | |
| TIGR03246 | 397 | TIGR03246, arg_catab_astC, succinylornithine trans | 1e-04 | |
| TIGR00709 | 442 | TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase | 1e-04 | |
| PLN00144 | 382 | PLN00144, PLN00144, acetylornithine transaminase | 2e-04 | |
| TIGR03251 | 431 | TIGR03251, LAT_fam, L-lysine 6-transaminase | 2e-04 | |
| PRK05093 | 403 | PRK05093, argD, bifunctional N-succinyldiaminopime | 3e-04 | |
| cd03109 | 134 | cd03109, DTBS, Dethiobiotin synthetase (DTBS) is t | 5e-04 | |
| PRK12381 | 406 | PRK12381, PRK12381, bifunctional succinylornithine | 0.001 | |
| PRK08593 | 445 | PRK08593, PRK08593, 4-aminobutyrate aminotransfera | 0.001 | |
| PRK01278 | 389 | PRK01278, argD, acetylornithine transaminase prote | 0.002 | |
| COG0132 | 223 | COG0132, BioD, Dethiobiotin synthetase [Coenzyme m | 0.002 | |
| PRK08297 | 443 | PRK08297, PRK08297, L-lysine aminotransferase; Pro | 0.003 |
| >gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 1203 bits (3114), Expect = 0.0
Identities = 472/792 (59%), Positives = 562/792 (70%), Gaps = 32/792 (4%)
Query: 14 RRILLRLFHHSTFHPQPL---DLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA 70
+L L LPLS P F +W ANT++GKTLVSAGL+++ +S
Sbjct: 1 LHMLRSLIGLRRRSSSSSAAGALPLSCPAFAVWGANTAVGKTLVSAGLAAA-----AASR 55
Query: 71 NKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSS 130
+Y+KP+QTG+P DSD+RF+F K SLS R SL SN LF S AAKS L
Sbjct: 56 RSPVLYVKPVQTGFPDDSDARFVFRKADSLSRRS---ESLFASNRTLFLSPPAAKSALG- 111
Query: 131 RDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGG 190
+N E ++ S L C TLFAW AVSPHLAA RE G
Sbjct: 112 ------GVSSMGAHAAVNAGAEAGVTS------SALWCHTLFAWRRAVSPHLAARRE-GR 158
Query: 191 VVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFR 250
V D +V+E + + LR+ +E G +L +VETAGGVASPGPSG+LQCDLYRP R
Sbjct: 159 GVSDDEVLEAVNRSLRE----VGANESGGGRVLALVETAGGVASPGPSGTLQCDLYRPLR 214
Query: 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVL 310
LP ILVGDGRLGGIS T++AYESL LRGYDVVAVV EDHGL NE L+SYL NRVPV VL
Sbjct: 215 LPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDHGLSNEKALLSYLSNRVPVFVL 274
Query: 311 PPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKL 370
PP+P+D +DL EWFD+S + FD+L + + +S R+QRL MPK AGE+ WWPFTQH L
Sbjct: 275 PPVPEDPGDDLDEWFDDSKSTFDALLDALQSWHSGRLQRLQSMPKEAGEVLWWPFTQHAL 334
Query: 371 VPEEAVTVIDSRCGENFSVYQDQKN--KFIGQQFDACASWWTQGPDATLQIELARDMGYT 428
VP ++VTVIDSRCGE+FSVY+ + N I QQFDACASWWTQGPD TLQ ELAR + Y
Sbjct: 335 VPRDSVTVIDSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTLQPELARAVAYA 394
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A R+GHVMFPENV+EPAL AELLL G GKGWASR +FSDNGSTAIE+ALKMAFRKF D
Sbjct: 395 AGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVD 454
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
H L + + IELKVLAL GSYHGDTLGAMEAQAPS +TGFLQQPWYSGRGLFL
Sbjct: 455 HGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFL 514
Query: 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608
DPPTV M N +W +SLPE S + ++ T+ SRDE+F + RDS+ LA Y SYI Q L
Sbjct: 515 DPPTVGMRNGRWNISLPEGFSSGLEG-EETTWESRDEVFDKTRDSTPLAKAYRSYIEQQL 573
Query: 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668
+ +G I ALIIEPV+H AGGM ++DPLFQR LV+ C++RKIPVIFDEVFTG WR
Sbjct: 574 DEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWR 633
Query: 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSA 728
LGVE+ +LLGC PDIACY KLLTGG++PLAATLAT VF++F G SKL ALLHGHSY+A
Sbjct: 634 LGVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTA 693
Query: 729 HALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCA 788
H +GCAAAAK+++W+KDP TN N+IP LRELWD EL++ ISS V+RVV+LGT+ A
Sbjct: 694 HPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLA 753
Query: 789 IELQAAGCNAGY 800
+EL A G +GY
Sbjct: 754 LELDAEGSGSGY 765
|
Length = 817 |
| >gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 243 bits (623), Expect = 1e-72
Identities = 122/439 (27%), Positives = 185/439 (42%), Gaps = 87/439 (19%)
Query: 362 WWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT-----QGPDAT 416
W P+TQ K I+ E +Y + ++I D +SWW P
Sbjct: 2 WHPYTQMKD--ALPPLPIER--AEGVYLYDEDGREYI----DGISSWWVNIHGHNHP--- 50
Query: 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 476
E+ + + HVMF +EPA+E AE L++ +G + +FSD+GS A+E+
Sbjct: 51 ---EINAAIKEQLDKLEHVMFGGLTHEPAIELAERLVEITPEGLE-KVFFSDSGSVAVEV 106
Query: 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS----PY 532
ALKMA + + + K + LA + YHGDT GAM +
Sbjct: 107 ALKMALQYW----------QNQGRPGK---TRFLAFRNGYHGDTFGAMSVGDVGGFHALF 153
Query: 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592
L VF + C + + +
Sbjct: 154 EPLL-------------FEVVF------------------IPAPPCYRCWDPD----DCE 178
Query: 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN 652
+ LA++ + LL+ + I A I+EP+V AGGM P + R L + C
Sbjct: 179 AECLAAL------EALLEEHADE----IAAFIVEPLVQGAGGMRFYPPEYLRKLRELCDE 228
Query: 653 RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712
+ +I DE+ TGF R G + G PDI C K LTGG +PLAATL T+ ++++F
Sbjct: 229 YGVLLIADEIATGFGRTGKLFACEHAGVTPDILCLSKGLTGGYLPLAATLTTDEIYEAFY 288
Query: 713 GDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772
D + KA +HGH+Y+ + L CAAA S+ ++ + RI E + +
Sbjct: 289 SDDEGKAFMHGHTYTGNPLACAAALASLDLLEEEDWLEQV---ARI--EAQLRAGLAPLR 343
Query: 773 SHRTVQRVVALGTLCAIEL 791
H V V LG + A+EL
Sbjct: 344 DHPGVADVRVLGAIGAVEL 362
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417 |
| >gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 228 bits (584), Expect = 5e-67
Identities = 124/450 (27%), Positives = 177/450 (39%), Gaps = 112/450 (24%)
Query: 362 WWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIEL 421
W P+TQ KL I E +Y + I DA +SWW AT
Sbjct: 13 WHPYTQMKL--HPPPIPIVR--AEGAYLYLADGRELI----DAISSWWV----ATH---- 56
Query: 422 ARDMGY-----------TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNG 470
G+ R HV+F +EPA A+ L+ G +FSD+G
Sbjct: 57 ----GHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQRLVALTPGGL-DHVFFSDSG 111
Query: 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM----EA 526
S A+E+ALKMA + + + + + L+L+G YHGDT+G M
Sbjct: 112 SVAVEVALKMALQYW----------RNRGEPGRS---RFLSLRGGYHGDTIGTMSVGDRG 158
Query: 527 QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEI 586
+ YT L + + P D
Sbjct: 159 GMHALYTPLLFEQ------VTAPFP-------------------------------PDG- 180
Query: 587 FYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646
YE+ L ++ + +G I A I+EP+V AGGM DP + L
Sbjct: 181 -YEQATLDALEALLEKH-------------AGEIAAFIVEPLVQGAGGMLFYDPRYLAEL 226
Query: 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNA 706
+ C + +IFDE+ TGF R G + G PDI C K LTGG +PLAATL T
Sbjct: 227 RRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAE 286
Query: 707 VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDP---QTNHNIIPERRILRELW 763
+F++F D + KA +H SY+A+ L CAAA S+ F+D + + + L
Sbjct: 287 IFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAAL--SAGLAEGL- 343
Query: 764 DLELIQQISSHRTVQRVVALGTLCAIELQA 793
+ V V LG + A+EL
Sbjct: 344 -----EPFRDLPGVADVRVLGAIGAVELDR 368
|
Length = 423 |
| >gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 213 bits (545), Expect = 3e-61
Identities = 116/441 (26%), Positives = 182/441 (41%), Gaps = 78/441 (17%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATL--- 417
W PFTQ + P VI E + +++ D + W
Sbjct: 13 LWHPFTQMRD-PLAEPRVIVR--AEGVYLTDIDGRRYL----DGMSGLWC----VNHGHG 61
Query: 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477
+ E+A + + HVMF +EPA+E AE L + +G +F+D+GS A+E A
Sbjct: 62 RPEIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETA 121
Query: 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM-----EAQAPSPY 532
LKMA + + + ++ K ++ + YHGDTLGAM A + Y
Sbjct: 122 LKMALQYW----------RARGQPQRK---KFISRRNGYHGDTLGAMSVGGPVALRHAFY 168
Query: 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592
L L L P + E+
Sbjct: 169 DPLLP------EVLHLPAPYAYRRGFFG-EGDEEFA----------------------EA 199
Query: 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN 652
+ +L ++ I ++ + I A I+EPVV AGGM + P + + + + C
Sbjct: 200 ADELEAL----ILEHGPET--------IAAFIVEPVVGGAGGMLVPPPGYLKRVREICDK 247
Query: 653 RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712
I +I DEV TGF R G + G VPDI C K LTGG +PL+A L ++ ++++F
Sbjct: 248 YGILLIADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFS 307
Query: 713 GDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772
A +HGH+YS + L CAAA ++ ++ +++ + L ++
Sbjct: 308 DG-DAGAFMHGHTYSGNPLACAAALANLDILEE----EDLLERVAEIGAYLQAGLQAALA 362
Query: 773 SHRTVQRVVALGTLCAIELQA 793
H V V LG + AIEL A
Sbjct: 363 DHPLVGDVRGLGLIGAIELVA 383
|
Length = 449 |
| >gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 1e-43
Identities = 100/403 (24%), Positives = 159/403 (39%), Gaps = 91/403 (22%)
Query: 395 NKFIGQQFDACASWWTQG-----PDATLQIELARDMGYTAARFGHVMFPENVYEPALECA 449
N+++ D + P E+ + A+ H EPA+E A
Sbjct: 36 NRYL----DFLSGIGVLNLGHNHP------EVVEALKEQLAKLTHFSLGFFYNEPAVELA 85
Query: 450 ELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509
ELLL +G + +F ++G+ A+E ALK+A R ++ G+ K+
Sbjct: 86 ELLLALTPEG-LDKVFFVNSGTEAVEAALKLA-RAYT----------GRK--------KI 125
Query: 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569
++ +G+YHG TLGA+ Y RG F LP L+
Sbjct: 126 ISFEGAYHGRTLGALSLTGSKKY-----------RGGFGPL-------------LPGVLH 161
Query: 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629
+ + R + DL ++ + L+ +V A+I+EP+
Sbjct: 162 --------VPYPYRY--RPPAELADDLEAL------EEALEEHPEEV----AAVIVEPIQ 201
Query: 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK 689
GG+ + P + + L + C+ I +I DEV TGF R G + G PDI GK
Sbjct: 202 -GEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLGK 260
Query: 690 LLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTN 749
L GG+ PL A L + D+F LHG ++ + L CAAA ++ ++
Sbjct: 261 GLGGGL-PLGAVLGREEIMDAF----PAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLL 315
Query: 750 HNIIP-ERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
N + L EL ++ H V V G + IEL
Sbjct: 316 ENAAELGEYLRERL--RELAEK---HPLVGDVRGRGLMIGIEL 353
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413 |
| >gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 1e-42
Identities = 129/445 (28%), Positives = 197/445 (44%), Gaps = 66/445 (14%)
Query: 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPD 414
+R + W P TQ + P V +R GE + +++ DA +SWWT
Sbjct: 25 QRDLAVLWHPCTQMREHPHTLPLVPIAR-GEGAWLVGHDGRRYL----DAVSSWWTNLFG 79
Query: 415 ATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL----QGVGKGWASRAYFSDNG 470
+ + + A VM +EPA++ AE LL + G+ S+ +++DNG
Sbjct: 80 HA-EPRIGAAIAAQAGELEQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNG 138
Query: 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS 530
S +E+ALKMAF F E + T + +AL+ YHG+T+GA+
Sbjct: 139 SAGVEVALKMAFHYFHNRGE------HRRT-------RFIALENGYHGETIGALAVG--- 182
Query: 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590
D P +Y + L E L++ S D E
Sbjct: 183 ------------------DIP---LYRRVYAPLLLESLFAP----------SPDAYLAEP 211
Query: 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650
S++ ++ ++ Q L + + G I ALI+EP + AGGM M P + R + C
Sbjct: 212 GQSAEDYALQAADALQALFE----QSPGEICALILEPRLQCAGGMRMHHPAYLRRARELC 267
Query: 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
+I DE+ TGF R G + G +PD+ C K LTGG +PL+A LAT ++D+
Sbjct: 268 DAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDA 327
Query: 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770
F+ DS+ +A LH HSY+ + L CAAA ++ F D ++I + +L Q
Sbjct: 328 FLDDSRERAFLHSHSYTGNPLACAAALATLDIFAD----DDVIARNQPTAARMT-QLAAQ 382
Query: 771 ISSHRTVQRVVALGTLCAIELQAAG 795
I H V V G + A EL G
Sbjct: 383 IGEHPHVADVRQAGMVVAFELTRGG 407
|
Length = 472 |
| >gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 9e-40
Identities = 97/414 (23%), Positives = 148/414 (35%), Gaps = 88/414 (21%)
Query: 384 GENFSVYQDQKNKFIGQQFDACASWWT--QG---PDATLQIELARDMGYTAARFGHVMFP 438
+ +Y +++ D + G P ++ + + A + H F
Sbjct: 5 AKGVWLYDVDGRRYL----DFLSGIAVVNLGHCHP------KIVQAVKEQADKLTHTSFR 54
Query: 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498
EPAL+ AE L Q G R +F ++GS A E A+K+A +
Sbjct: 55 AFTTEPALQLAEKLAQLTPGG-LDRVFFMNSGSEANETAIKLARQYAKKKGA-------- 105
Query: 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558
T K K++A G +HG TLGA+ S Y G G L
Sbjct: 106 --TGKT---KIIAFSGGFHGRTLGALSVTGSSGY--------KKGFGPSLP--------- 143
Query: 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618
+ LP E +LA + + +
Sbjct: 144 -GVYFLP--------------------YPDLEAAEEELACADEALRLIKAVHDDN----- 177
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678
I A+I+EP+ GG+ P F L + C+ + +I DEV TGF R G +
Sbjct: 178 -IAAVIVEPI-QGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGKLFACEHY 235
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAK 738
G PDI K LTGG +PL+A LAT + +F HG ++ + L CAAA
Sbjct: 236 GVTPDIMTLAKALTGG-LPLSAVLATAEIMQAF------HPGSHGGTFGGNPLACAAALA 288
Query: 739 SIKWFKDPQTNHNI-IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
+ +D N + + L + + V G + AIE+
Sbjct: 289 VLDIIEDENLLQNAQEKGDYLRKGL------LALQDKPVIGDVRGKGLMIAIEI 336
|
Length = 338 |
| >gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 3e-39
Identities = 128/437 (29%), Positives = 191/437 (43%), Gaps = 77/437 (17%)
Query: 362 WWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ--GPDATLQI 419
W P TQ K E + +I R GE + + +++ DA +SWW G A +I
Sbjct: 16 WHPCTQMK--DHEQLPLIPIRRGEGVWLEDFEGKRYL----DAVSSWWVNVFG-HANPRI 68
Query: 420 ELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479
+ + HV+ +EP +E +E L++ G SR +++DNGS+AIE+ALK
Sbjct: 69 NQR--IKDQVDQLEHVILAGFSHEPVIELSERLVKITPPG-LSRCFYADNGSSAIEVALK 125
Query: 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539
M+F + + K + + L SYHG+TL AM + +T
Sbjct: 126 MSFHYW----------RNRGKPRK---KRFVTLTNSYHGETLAAMSVGDVALFTE----- 167
Query: 540 WYSGRGLFLDPPTVFMYNSKWILSLPE---WLYSKIVEHKDITFCSRDEIFYEERDSSDL 596
+ + L LD V S PE W EH F ++ E D
Sbjct: 168 --TYKPLLLDTIKV---PSPDCYLRPEGMSW-----EEHSRRMFAHMEQTLAEHHDE--- 214
Query: 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656
I A+I+EP++ AGGM M P++ ++L + C +
Sbjct: 215 -----------------------IAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVH 251
Query: 657 VIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-S 715
+I DE+ GF R G + G PD C K LTGG +PLAA L T+ V+ +F D
Sbjct: 252 LIHDEIAVGFGRTGTMFACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYP 311
Query: 716 KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRIL-RELWDLELIQQISSH 774
L+A LH HSY+ + L CAAA ++ F+ N+I R L R + E ++ H
Sbjct: 312 TLRAFLHSHSYTGNPLACAAALATLDIFEQ----DNVIENNRALARRM--AEATAHLADH 365
Query: 775 RTVQRVVALGTLCAIEL 791
V V G + AIE+
Sbjct: 366 PHVAEVRQTGMILAIEM 382
|
Length = 466 |
| >gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 1e-36
Identities = 118/466 (25%), Positives = 198/466 (42%), Gaps = 86/466 (18%)
Query: 334 SLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQ 393
S + Y E ++ W PFTQ K EE +I+ GE +Y
Sbjct: 4 STTDKPSYTYEELSEK-------NKAYVWHPFTQMKDYLEEDPLIIER--GEGRKLYDVN 54
Query: 394 KNKFIGQQFDACASWWT-----QGP--DATLQIELARDMGYTAARFGHVMFPENVYEPAL 446
N++ +D +S W Q P D ++ +L + T +V P++
Sbjct: 55 GNEY----YDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGLANV--------PSI 102
Query: 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIE 506
AE L++ V +G + ++SD+G+TA+EIA+KMAF+ + GK ++ +
Sbjct: 103 LLAEKLIEVVPEG-LKKVFYSDSGATAVEIAIKMAFQYWQ--------NKGKPKKQRFV- 152
Query: 507 LKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566
LK +YHGDT+GA+ A LF + ++ + + P
Sbjct: 153 ----TLKNAYHGDTIGAVSVGAID---------------LFHQVYSSLLFEA-IKMPYPY 192
Query: 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE 626
S K + E + LL+ +++ I +E
Sbjct: 193 TYRSPYGNDKAEI---VKKHLEELEE---------------LLKEKHEEIAAII----VE 230
Query: 627 PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC 686
P+V AGGM + + + L C + I DEV TGF R G + PDI
Sbjct: 231 PLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDIMT 290
Query: 687 YGKLLTGGVIPLAATLATNAVFDSFVGD-SKLKALLHGHSYSAHALGCAAAAKSIKWFKD 745
GK LTGG +P+A T+ T+ ++++F GD + K HGHSY+ + LGCA A +++ ++
Sbjct: 291 AGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYE- 349
Query: 746 PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
N+I E+ + + ++ + + + V + LG + IEL
Sbjct: 350 ---KTNLI-EQVARKTEYVATQLEDLFALKHVGDIRQLGLMVGIEL 391
|
Length = 460 |
| >gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 8e-36
Identities = 122/412 (29%), Positives = 185/412 (44%), Gaps = 95/412 (23%)
Query: 399 GQQF-DACASWWTQGPDATLQIELARDMGYTAARF-----------GHVMFPENVYEPAL 446
G++ D +SWW A L GY R H+MF +EPA+
Sbjct: 43 GRRLIDGMSSWW-----AALH-------GYNHPRLNAAATNQLAKMSHIMFGGFTHEPAV 90
Query: 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIE 506
E A+ LL+ + ++ +F+D+GS A+E+A+KMA + + K ++
Sbjct: 91 ELAQKLLEILPPS-LNKIFFADSGSVAVEVAMKMALQ---YQQ-------AKGEVQRT-- 137
Query: 507 LKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566
K ++ YHGDT AM P TG GLF SLP
Sbjct: 138 -KFATIRSGYHGDTWHAM--SVCDPVTGM--------HGLFNH-------------SLP- 172
Query: 567 WLYSKIVEHKDITFCSRDEI-FYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII 625
V++ F + I F EE + + + Q+LL+ G + I ALI+
Sbjct: 173 ------VQY----FLPQPSIKFGEEWNDEAIEPL------QDLLEQKGDE----IAALIL 212
Query: 626 EPVVHAAGGMHMVDPLFQRILVKE---CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP 682
EPVV AGGM+ P + LVK C + +IFDE+ TGF R G + G VP
Sbjct: 213 EPVVQGAGGMYFYSPTY---LVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVP 269
Query: 683 DIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKW 742
DI C GK LTGG + L+AT+ T A+ + + + K +HG ++ A+ L CA AA+SI+
Sbjct: 270 DIMCIGKALTGGYLTLSATITTEAIAQT-ICSGEAKCFMHGPTFMANPLACAIAAESIRL 328
Query: 743 FKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794
+ NI +RI +L + + + +V V LG + +E++
Sbjct: 329 LLESPWQQNI---QRIEAQL--KQELAPAAEFDSVAEVRVLGAIGVVEMKEP 375
|
Length = 429 |
| >gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 7e-33
Identities = 100/350 (28%), Positives = 138/350 (39%), Gaps = 84/350 (24%)
Query: 403 DACASWWTQG---------PDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453
DA +SWW+ A QI+ HVMF +EPA++ LL
Sbjct: 44 DAMSSWWSAAHGHGHPRLKAAAHKQID----------TMSHVMFGGLTHEPAIKLTRKLL 93
Query: 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513
G ++SD+GS ++E+A+KMA ++S G+ E+ ++L +
Sbjct: 94 NLTDNGL-DHVFYSDSGSVSVEVAIKMAL-QYS---------KGQGHPERT---RLLTWR 139
Query: 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR---GLFLDPPTVFMYNSKWILSLPEWLYS 570
YHGDT AM P G + W G +F P P
Sbjct: 140 SGYHGDTFAAMSVCDPE---GGMHSLW-KGTLPEQIFAPAP-------------PVR--- 179
Query: 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630
S EI S L S+ I + + A+IIEP+V
Sbjct: 180 ---------GSSPQEI------SEYLRSL-ELLIDET------------VAAIIIEPIVQ 211
Query: 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKL 690
AGGM D + C I +I DE+ TGF R G G PDI C GK
Sbjct: 212 GAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIMCVGKA 271
Query: 691 LTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSI 740
LTGG + AATL T+ V + AL+HG ++ A+ L CA A S+
Sbjct: 272 LTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASL 321
|
Length = 422 |
| >gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 3e-31
Identities = 100/374 (26%), Positives = 151/374 (40%), Gaps = 88/374 (23%)
Query: 431 RFGHVMFPENVYEPALE-CAELL------LQGVGKGWASRAYFSDNGSTAIEIALKMAFR 483
HVMF + PA+E C +L+ L+ V + +D+GS A+E+A+KMA +
Sbjct: 74 AMSHVMFGGITHPPAIELCRKLVAMTPQPLECV--------FLADSGSVAVEVAMKMALQ 125
Query: 484 KFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-----SPYTGFLQQ 538
+ E + L L+ YHGDT GAM P S Y G+L +
Sbjct: 126 YWQAKGEP--------------RQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPE 171
Query: 539 PWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598
LF P SR F E D D+A
Sbjct: 172 ------NLFAPAPQ-----------------------------SR---FDGEWDERDIAP 193
Query: 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658
++ ++ + I A+I+EP+V AGGM + P + + + K C I +I
Sbjct: 194 -FARLMAAH---------RHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLI 243
Query: 659 FDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLK 718
DE+ TGF R G + G PDI C GK LTGG + L+ATL T V ++ + + +
Sbjct: 244 ADEIATGFGRTGKLFACEHAGIAPDILCLGKALTGGTMTLSATLTTREVAET-ISNGEAG 302
Query: 719 ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ 778
+HG ++ + L CA A S+ + + LR E + + V
Sbjct: 303 CFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIEAQLR-----EELAPLRDAPMVA 357
Query: 779 RVVALGTLCAIELQ 792
V LG + +E
Sbjct: 358 DVRVLGAIGVVETT 371
|
Length = 428 |
| >gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 4e-26
Identities = 95/365 (26%), Positives = 146/365 (40%), Gaps = 69/365 (18%)
Query: 437 FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496
F + A+E + L+ R +FS GS ++E ALK+A R++ +V
Sbjct: 80 FDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLA-RQY---WKVR---- 131
Query: 497 GK-DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY-TGFLQQPWYSGRGLFLDPPTVF 554
G+ + T K ++LK YHG G + + + +P G T +
Sbjct: 132 GQPERT------KFISLKQGYHGTHFGGASVNGNTVFRRNY--EPLLPG---CFHVETPW 180
Query: 555 MYNSKWILSLPEWLYSKIVEHKDITFCSR---DEIFYEERDSSDLASIYSSYISQNLLQN 611
+Y + + PE ++ C+R EI ++ D+
Sbjct: 181 LYRNPFTEQDPE----ELARI-----CARLLEREIAFQGPDT------------------ 213
Query: 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLG 670
I A I EPV AGG+ +V P LV+E C I +I DEV TGF R G
Sbjct: 214 --------IAAFIAEPV-QGAGGV-IVPPANFWPLVREVCDRHGILLIADEVVTGFGRTG 263
Query: 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV-GDSKLKALLHGHSYSAH 729
+ G PDI C K +T G +PL AT+ + D+F A++HG++YS H
Sbjct: 264 SWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGH 323
Query: 730 ALGCAAAAKSIKWFKDPQTNHNIIPE-RRILRELWDLELIQQISSHRTVQRVVALGTLCA 788
+ CAAA ++ N +L L L+ V V G + A
Sbjct: 324 PVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLK-----ERFELVGDVRGKGLMLA 378
Query: 789 IELQA 793
++L A
Sbjct: 379 LDLVA 383
|
Length = 449 |
| >gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-23
Identities = 86/368 (23%), Positives = 132/368 (35%), Gaps = 76/368 (20%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A+ H + YEP +E AE L + +F ++G+ A+E A+K+A R ++
Sbjct: 85 LAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIA-RAYTGR 143
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
V+A G++HG TLGA+ P P+ +G G
Sbjct: 144 P------------------GVIAFDGAFHGRTLGALSLTGSKP-------PYKAGFGPLP 178
Query: 549 DPPTVFMY-NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQN 607
Y N + D +F E ++A
Sbjct: 179 PGVYHVPYPNPY----RCPFGIGGEECGDDALEYIERALFDLEVGPEEVA---------- 224
Query: 608 LLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667
A+IIEP+ G + + L K C+ I +I DEV TGF
Sbjct: 225 --------------AIIIEPIQGEGGIIVPPKGFLKA-LRKLCREHGILLIADEVQTGFG 269
Query: 668 RLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHG 723
R G E G PDI K L GG +PL+A + + D G HG
Sbjct: 270 RTGKMFAFEHF----GVEPDIVTLAKSLGGG-LPLSAVVGRAEIMDWPPG-------GHG 317
Query: 724 HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL 783
++ + + CAAA + ++ LR+ LE +Q+ H + V L
Sbjct: 318 GTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRD--RLEELQE--KHPLIGDVRGL 373
Query: 784 GTLCAIEL 791
G + +EL
Sbjct: 374 GLMIGVEL 381
|
Length = 447 |
| >gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 3e-21
Identities = 94/375 (25%), Positives = 143/375 (38%), Gaps = 109/375 (29%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
A + HV N++ EP E AE L++ +A R +F ++G+ A E ALK+A RK++
Sbjct: 71 AEKLWHV---SNLFYNEPQAELAEKLVELSP--FADRVFFCNSGAEANEAALKLA-RKYT 124
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546
D E + K++A + S+HG TLGA+ A TG QP Y
Sbjct: 125 GDPE---------------KSKIIAFENSFHGRTLGALSA------TG---QPKYRKGFG 160
Query: 547 FLDPPTVFM-YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYIS 605
L P + +N D+ ++ + I
Sbjct: 161 PLLPGFRHVPFN-------------------------------------DIEAL-EAAID 182
Query: 606 QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG 665
++ A+I+EP+ GG+ P F + L + C +I DEV TG
Sbjct: 183 ED------------TAAVIVEPI-QGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTG 229
Query: 666 FWRLGVETTADLLGC-----VPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGDSKLKA 719
R T L PDI K L GG P+ A LAT + +F GD
Sbjct: 230 LGR-----TGKLFAYEHYGVEPDILTLAKALGGGF-PIGAMLATEEIASAFTPGD----- 278
Query: 720 LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER-RILRELWDLELIQQISSHRTVQ 778
HG ++ + L CA A ++ + + E R E L + + V+
Sbjct: 279 --HGSTFGGNPLACAVALAVLEVLLEEG-----LLENVREKGEYLLQRLRELKRRYPLVK 331
Query: 779 RVVALGTLCAIELQA 793
V G + IEL+
Sbjct: 332 EVRGRGLMIGIELKE 346
|
Length = 404 |
| >gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 2e-20
Identities = 57/176 (32%), Positives = 83/176 (47%), Gaps = 13/176 (7%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I A+I+EPV + G + QR L + C I +IFDEV TGF RLG A G
Sbjct: 216 IAAVIVEPVAGSTGVLIPPKGYLQR-LREICDKHGILLIFDEVITGFGRLGAPFAAQYFG 274
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFV-GDSKLKALLHGHSYSAHALGCAAAAK 738
PD+ K LT G IP+ A ++ + D+F+ G HG++YS H L CAAA
Sbjct: 275 VTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALA 334
Query: 739 SIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV---ALGTLCAIEL 791
++ ++ ++ L W+ + S R V+ LG + A+EL
Sbjct: 335 TLDLYER----EGLLTRAARLAPYWE----DALHSLRDAPHVIDIRNLGLVGAVEL 382
|
Length = 442 |
| >gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 4e-20
Identities = 50/120 (41%), Positives = 70/120 (58%), Gaps = 6/120 (5%)
Query: 620 IGALIIEPVVHAAGGMHMVDP--LFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I A+I+EP+ +AG + V P QR L + C I +IFDEV TGF RLG A+
Sbjct: 219 IAAVIVEPMAGSAGVL--VPPKGYLQR-LREICDKHGILLIFDEVITGFGRLGAAFAAER 275
Query: 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV-GDSKLKALLHGHSYSAHALGCAAA 736
G PDI + K LT G IP+ A +A++ ++D+F+ G HG++YSAH + CAA
Sbjct: 276 FGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAG 335
|
Length = 445 |
| >gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 2e-19
Identities = 90/361 (24%), Positives = 139/361 (38%), Gaps = 103/361 (28%)
Query: 440 NVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
N+Y EP E AE L V + +F ++G+ A E A+K+A RK+ H+
Sbjct: 76 NLYYIEPQEELAEKL---VELSGMDKVFFCNSGAEANEAAIKLA-RKYG--HKKG----- 124
Query: 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557
+ +++ + S+HG TL + A TG QP Y + F F+Y
Sbjct: 125 ------IEKPEIITAENSFHGRTLATLSA------TG---QPKY--QEGFEPLVEGFIY- 166
Query: 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617
V DI ++ + ++
Sbjct: 167 ---------------VPFNDI------------------EALKA-------------AIT 180
Query: 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
A+++EP+ GG++ D + + L + C I +I DEV TG R G
Sbjct: 181 DKTAAVMLEPI-QGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQH 239
Query: 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV-GDSKLKALLHGHSYSAHALGCAAA 736
G PDI K L GGV P+ A LA V D F GD HG ++ + L CAAA
Sbjct: 240 YGIEPDIMTLAKGLGGGV-PIGAVLAKEKVADVFTPGD-------HGSTFGGNPLACAAA 291
Query: 737 AKSIKWFKDPQTNHNIIPERRILRELWDL------ELIQQISSHRTVQRVVALGTLCAIE 790
I+ II E +L ++ +L + + + ++ V LG + IE
Sbjct: 292 LAVIE----------IIEEEGLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIE 341
Query: 791 L 791
L
Sbjct: 342 L 342
|
Length = 396 |
| >gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 2e-18
Identities = 47/127 (37%), Positives = 68/127 (53%)
Query: 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676
+G I ALI+EP+V A GM M DP + R L C + +I DE+ G R G +
Sbjct: 219 AGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACE 278
Query: 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAA 736
G PD C K ++GG +PL+ L+ +A+F +F D + LH HSY+ + L C AA
Sbjct: 279 QAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAA 338
Query: 737 AKSIKWF 743
++ F
Sbjct: 339 LATLDLF 345
|
Length = 453 |
| >gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 3e-18
Identities = 93/356 (26%), Positives = 148/356 (41%), Gaps = 67/356 (18%)
Query: 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502
EPA + A+ L G + ++F ++GS A E A+K+A + F +
Sbjct: 74 EPAEKLAKKLSDLSP-GDLNWSFFVNSGSEANETAMKIAIQHFQ----------ERGIQG 122
Query: 503 KCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWIL 562
K K+L+ SYHG T+GA+ +G + L D PT+
Sbjct: 123 KH---KILSRWMSYHGITMGALS------MSGHPLRR-QRFVSLLEDYPTI--------- 163
Query: 563 SLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622
S P +C R + + LA + ++ G + I A
Sbjct: 164 SAP--------------YCYRCP-VQKVYPTCQLACATEL---ETAIERIG---AEHIAA 202
Query: 623 LIIEPVVHAAGGMHMVDP--LFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I EP++ AAG +V P ++ I KE C + I I DEV TG R G + G
Sbjct: 203 FIAEPIIGAAGAA-VVPPKGYYKVI--KEICDHYDILFIADEVMTGLGRTGAMFAMEHWG 259
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
PDI GK L G P+AAT+ ++ V + + S+ ++ GH+ SA+ L A A
Sbjct: 260 VEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRS--IMSGHTLSANPLSAATALAV 317
Query: 740 IKWFKDPQTNHNIIPERRILRE--LWDLELIQQISSHRTVQRVVALGTLCAIELQA 793
+++ + HN+ + E + L+ +QQ S+ + V G L +E A
Sbjct: 318 LEYME----KHNLPEKAAEKGEYLIKGLQKVQQQST--IIGDVRGKGLLIGVEFVA 367
|
Length = 447 |
| >gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 4e-18
Identities = 96/381 (25%), Positives = 146/381 (38%), Gaps = 97/381 (25%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
+ HV N+Y EP E AE L V A R +F ++G+ A E ALK+A RK++
Sbjct: 56 LEKLVHV---SNLYYTEPQEELAEKL---VEHSGADRVFFCNSGAEANEAALKLA-RKYT 108
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546
G EK K++A + S+HG T+GA+ A Y Q+ +
Sbjct: 109 ----------GDKGKEKK---KIIAFENSFHGRTMGALSATGQPKY----QKGFEP---- 147
Query: 547 FLDPPTVFM-YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYIS 605
L P + YN E L I +
Sbjct: 148 -LVPGFSYAPYND------IESLKKAIDDE------------------------------ 170
Query: 606 QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG 665
A+I+EP+ GG++ F + L + C+++ +IFDEV TG
Sbjct: 171 --------------TAAVIVEPI-QGEGGVNPASAEFLKALREICKDKDALLIFDEVQTG 215
Query: 666 FWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGDSKLKALLHGH 724
R G + G PDI K L GGV P+ ATLA V ++F GD HG
Sbjct: 216 IGRTGKFFAYEHYGIEPDIITLAKGLGGGV-PIGATLAKEEVAEAFTPGD-------HGS 267
Query: 725 SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG 784
++ + L CAAA ++ + + N+ + +E + + V G
Sbjct: 268 TFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLEELGKNYPNKE-----VRGKG 322
Query: 785 TLCAIELQAAGCNAGYCLIEL 805
+ IEL+A + +E
Sbjct: 323 LMLGIELEAPCKDIVKKALEK 343
|
This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379 |
| >gnl|CDD|222178 pfam13500, AAA_26, AAA domain | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 2e-17
Identities = 54/175 (30%), Positives = 77/175 (44%), Gaps = 34/175 (19%)
Query: 155 ISGEEDSSVSELVCKTL-----------FAWEEAVSPHLAAERESGGVVGD-SKVIETLG 202
SG D SELV + L + +SPHLAA E GV D K+++ L
Sbjct: 38 QSGLVDDGDSELVKRLLGLDQTREHPEPYRLSAPLSPHLAARLE--GVTIDLEKIVKKLP 95
Query: 203 KCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLG 262
K + L +VE AGG+ P L D+ LP ILV G LG
Sbjct: 96 KDA---------------DPL-VVEGAGGLMVPLNENLLNIDIAANLGLPVILVARGGLG 139
Query: 263 GISGTISAYESLKLRGYDVVAVVF-EDHGLVNEVPLMSYLRNRVPVL-VLPPLPQ 315
I+ T+ E+L+ RG +++ V+ N + ++ + VPVL V+P LP
Sbjct: 140 TINHTLLTIEALRSRGINILGVILNGVPNPANVEAIEAF--SGVPVLGVIPYLPD 192
|
This domain is found in a number of proteins involved in cofactor biosynthesis such as dethiobiotin synthase and cobyric acid synthase. This domain contains a P-loop motif. Length = 197 |
| >gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 4e-16
Identities = 105/467 (22%), Positives = 170/467 (36%), Gaps = 142/467 (30%)
Query: 364 PFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT----QGPDATLQI 419
PF+ K + E+ VI E ++ + NK + D A W G
Sbjct: 21 PFSDMKALNEKGSRVITR--AEGVYLWDSEGNKIL----DGMAGLWCVNVGYGRK----- 69
Query: 420 ELARDMGYTAAR---FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 476
ELA D R + + F + + PA+E A L + G+ + +F+++GS A +
Sbjct: 70 ELA-DAAARQMRELPYYNTFF-KTTHPPAIELAAKLAEVAPPGF-NHVFFTNSGSEANDT 126
Query: 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA--------MEAQA 528
L+M + GK +K + +++ K YHG T+ M Q
Sbjct: 127 VLRMVRHYW--------ALKGK--PQKKV---IISRKNGYHGSTVAGASLGGMKYMHEQG 173
Query: 529 PSPYTGF--LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEI 586
P G + QP++ G G + P ++ L+ L +KI+E
Sbjct: 174 DLPIPGIVHIDQPYWFGEGGDMTPE-------EFGLAAARQLEAKILE------------ 214
Query: 587 FYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD----PLF 642
+ + A I EP+ AGG+ + P
Sbjct: 215 LGADN----------------------------VAAFIGEPI-QGAGGVIIPPATYWPEI 245
Query: 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATL 702
QRI C+ I ++ DEV GF R G + G PD+ K LT G IP+ A
Sbjct: 246 QRI----CRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVG 301
Query: 703 ATNAVFDSFVGDSKLKALL-------HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755
VGD + L+ HG +YS H + A A +++ I+ +
Sbjct: 302 ---------VGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLR----------ILRD 342
Query: 756 RRI-----------LRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
I L++ ++++ H V V +G + AIEL
Sbjct: 343 EGIVERVRDDTGPYLQKRL-----RELADHPLVGEVRGVGLVGAIEL 384
|
Length = 456 |
| >gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 1e-15
Identities = 97/367 (26%), Positives = 142/367 (38%), Gaps = 77/367 (20%)
Query: 431 RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490
+ H F YEP LE E + Q V +A + GS A+E A+K+A
Sbjct: 72 KLSHTCFQVLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIA--------- 122
Query: 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550
+ T++ V+A G+YHG T + TG + P+ +G GL P
Sbjct: 123 -------RAATKRS---GVIAFTGAYHGRTHYTLA------LTGKVN-PYSAGMGLM--P 163
Query: 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610
V+ P L+ + E D S + IF + D+A+I
Sbjct: 164 GHVYR------ALYPCPLHG-VSE--DDAIASIERIFKNDAAPEDIAAI----------- 203
Query: 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670
IIEPV GG + P F + L C I +I DEV TG R G
Sbjct: 204 -------------IIEPV-QGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTG 249
Query: 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHA 730
+ +G D+ + K + GG PLA V D+ + L G +Y+ +
Sbjct: 250 TLFAMEQMGVAADLTTFAKSIAGG-FPLAGVTGRAEVMDA-IAPGGL-----GGTYAGNP 302
Query: 731 LGCAAAAKSIKWFKDPQ--TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCA 788
+ CAAA +K F+ N + E+ L++ L I H + V LG + A
Sbjct: 303 IACAAALAVLKVFEQENLLQKANALGEK--LKD--GLLAIA--EKHPEIGDVRGLGAMIA 356
Query: 789 IELQAAG 795
IEL G
Sbjct: 357 IELFEDG 363
|
Length = 425 |
| >gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 2e-15
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-VETTADLL 678
I A I EP++ +GG+ + P + + + C+ I I DEV TGF RLG + +
Sbjct: 221 IAAFIAEPIL-GSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVF 279
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALL-HGHSYSAHALGCAAAA 737
G PDI + K LT G PL A + + + D G + + HG +YS H + CAAA
Sbjct: 280 GIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAAL 339
Query: 738 KSI 740
K+I
Sbjct: 340 KNI 342
|
Length = 466 |
| >gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 2e-15
Identities = 88/352 (25%), Positives = 134/352 (38%), Gaps = 79/352 (22%)
Query: 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIE 506
E A L+ + G S+ +F++ G+ A E A++MA R + G+
Sbjct: 99 EAARLIAE-RAPGDLSKVFFTNGGADANEHAVRMA-RLHT----------GRP------- 139
Query: 507 LKVLALKGSYHGDTLGAMEAQA-----PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWI 561
KVL+ SYHG T A+ P+ +G F P F+Y S++
Sbjct: 140 -KVLSAYRSYHGGTGSAINLTGDPRRWPNDTGR-------AGVVHFFGP---FLYRSEFH 188
Query: 562 LSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG 621
+ E + + H I E + I
Sbjct: 189 ATTEEEECERALAHL------ERVIELEGPST--------------------------IA 216
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680
A+++E V AG +V P V+E C I +I DEV GF R G + G
Sbjct: 217 AILLESVPGTAG--ILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGV 274
Query: 681 VPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSI 740
VPD+ + K + G +PL + A+ +F D + G +YS H L CAAA +I
Sbjct: 275 VPDLITFAKGVNSGYVPLGGVAISEAIAATF-AD---RPYPGGLTYSGHPLACAAAVATI 330
Query: 741 KWFKDPQTNHNIIPE-RRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
++ I+ RI E+ L + H +V V LG A+EL
Sbjct: 331 NAMEE----EGIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALEL 378
|
Length = 451 |
| >gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 6e-15
Identities = 83/371 (22%), Positives = 151/371 (40%), Gaps = 82/371 (22%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A +F H + YEPA+E AE L++ G+ + +F+++G+ + E A+K+A ++
Sbjct: 83 AEKFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIA--RYHTG 140
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
+ ++ FLG ++HG T G++ A P +Q+ +G F
Sbjct: 141 RKYIIAFLG-----------------AFHGRTYGSLSLTASKP----VQR-----KGFFP 174
Query: 549 DPPTVFM------YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602
P V Y + W + PE + +++ + D +F + ++A
Sbjct: 175 LMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIE------DYLFKKLVPPEEVA----- 223
Query: 603 YISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDP--LFQRILVKECQNRKIPVIFD 660
A+I+EP+ GG ++V P F+ L K I +I D
Sbjct: 224 -------------------AIIVEPI-QGEGG-YVVPPKNFFKE-LRKLADKYGILLIDD 261
Query: 661 EVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKAL 720
EV TG R G + G PDI K + GG +PL A + + G
Sbjct: 262 EVQTGMGRTGKMFAIEHFGVEPDIITLAKAIAGG-LPLGAVIGRAELMFLPPG------- 313
Query: 721 LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV 780
H +++ + + AAA +++ ++ ++ + L E EL + + + V
Sbjct: 314 SHANTFGGNPVAAAAALATLEELEE-----GLLENAQKLGEYLRKELKELKEKYEFIGDV 368
Query: 781 VALGTLCAIEL 791
LG + +EL
Sbjct: 369 RGLGLMIGVEL 379
|
Length = 441 |
| >gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 1e-14
Identities = 55/187 (29%), Positives = 76/187 (40%), Gaps = 30/187 (16%)
Query: 620 IGALIIEPVVHAAGGMHMVDP------LFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673
I A I EPV+ G +V P Q +L K I +I DEV TGF RLG
Sbjct: 221 IAAFIAEPVLGTGG---IVPPPAGYWPAIQAVLKK----YDILLIADEVVTGFGRLGSMF 273
Query: 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV-GDSKLKALLHGHSYSAHALG 732
+D G PD+ K LT PL+ ++ V+D G + A+ HG +YS H +
Sbjct: 274 GSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPIC 333
Query: 733 CAAAAKSIKWFKDPQTNHNIIPERRILR------ELWDLELIQQISSHRTVQRVVALGTL 786
AAA N +I+ ++ + L H V V +G L
Sbjct: 334 AAAAL----------ANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGML 383
Query: 787 CAIELQA 793
A+E A
Sbjct: 384 AAVEFVA 390
|
Length = 461 |
| >gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 2e-14
Identities = 89/367 (24%), Positives = 147/367 (40%), Gaps = 91/367 (24%)
Query: 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA--FRKFSFDHEVLVDFLGKD 499
+EPA++ AE L + +G + +FS++GS A E A K+A + +
Sbjct: 88 HEPAIKLAEKLNEWLGGEY--VIFFSNSGSEANETAFKIARQYHAQKGEPH--------- 136
Query: 500 TTEKCIELKVLALKGSYHGDTLGAMEA--QAPSPY------TGFLQQPWYSGRGLFLDPP 551
K ++ +YHG+++GA+ A QA Y GFL P PP
Sbjct: 137 ------RYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVP----------PP 180
Query: 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611
C R E D DL + I + +
Sbjct: 181 ----------------------------DCYRMPGIESE-DIYDLECV--KEIDRVMTW- 208
Query: 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLG 670
++S I A+I+EP++ GG+ M + + VKE CQ +I DEV GF R G
Sbjct: 209 ---ELSETIAAVIMEPII-TGGGVLMPPQDYMK-AVKEICQKHGALLISDEVICGFGRTG 263
Query: 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHA 730
G PDI K +T +PL+AT ++++F G + + H +++ +
Sbjct: 264 KAFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNP 323
Query: 731 LGCAAAAKSIKWFKDPQTNHNIIPERRIL---RELWDL---ELIQQISSHRTVQRVVALG 784
CA A K+++ I+ ++ +L +L +L +++ H V + G
Sbjct: 324 AACALALKNLE----------IMENENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKG 373
Query: 785 TLCAIEL 791
L IEL
Sbjct: 374 LLVGIEL 380
|
Length = 451 |
| >gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 4e-14
Identities = 48/175 (27%), Positives = 68/175 (38%), Gaps = 34/175 (19%)
Query: 622 ALIIEPVVHA-AGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
A + E VV A AG + V F+RI +E C + +I DEV G R G + G
Sbjct: 202 AFVAETVVGATAGAVPPVPGYFKRI--REVCDRYGVLLILDEVMCGMGRTGTLFACEEDG 259
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
PD+ K L G P+ A LA++ ++D+ S HGH+Y HA CAAA
Sbjct: 260 VAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGS--GFFQHGHTYLGHATACAAA--- 314
Query: 740 IKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794
L + + I+ + V A G L+
Sbjct: 315 -------------------------LAVQRVIAEDGLLANVRARGEQLRARLRER 344
|
Length = 443 |
| >gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 5e-14
Identities = 81/313 (25%), Positives = 129/313 (41%), Gaps = 67/313 (21%)
Query: 438 PENV--YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495
P V YE L+ AE L + G +FS++G+ AIE ALK+A
Sbjct: 79 PSGVIYYESILKLAEEL-AEITPGGLDCFFFSNSGAEAIEGALKLA-------------- 123
Query: 496 LGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-SPYTGFLQQPWYSGRGLFLDPPTVF 554
K T++ +++ G +HG TLGA+ S Y + QP L
Sbjct: 124 --KHVTKR---PYIISFTGCFHGRTLGALSVTTSKSKYRKY-YQP--------LLGSVYQ 169
Query: 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614
P + + +D C + + DL S++ ++
Sbjct: 170 ---------APYPYCDRCPKGEDPEVCFLECL-------RDLESLFKHQVTPEE------ 207
Query: 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674
+ A+IIEPV+ GG + F + L + C I +IFDEV TGF R G
Sbjct: 208 -----VAAVIIEPVL-GEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFA 261
Query: 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCA 734
A G VPDI K + G +PL+A +A+ + + + S HG ++ + + CA
Sbjct: 262 AQTFGVVPDIMTIAKGIASG-LPLSAVVASKELMEQWPLGS------HGTTFGGNPVACA 314
Query: 735 AAAKSIKWFKDPQ 747
AA +++ K+ +
Sbjct: 315 AALATLEVIKEEK 327
|
Length = 433 |
| >gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 1e-13
Identities = 81/311 (26%), Positives = 129/311 (41%), Gaps = 65/311 (20%)
Query: 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502
+P+L+ A+ LL+ + +F+++GS A + +K+ + + LG+ +
Sbjct: 133 KPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVW--------YYNNALGRPNKK 184
Query: 503 KCIELKVLALKGSYHGDTL-GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK-- 559
K I A SYHG TL A + P+ + F D P F+ ++
Sbjct: 185 KFI-----ARSKSYHGSTLISASLSGLPALHQKF-------------DLPAPFVLHTDCP 226
Query: 560 --WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617
W LP E EE S+ LA +NL+ G +
Sbjct: 227 HYWRFHLP------------------GET--EEEFSTRLADNL-----ENLILKEGPET- 260
Query: 618 GCIGALIIEPVVHAAGGMHMVDPLFQRI--LVKECQNRKIPVIFDEVFTGFWRLGVETTA 675
I A I EPV+ A G + F++I ++K+ I I DEV F RLG
Sbjct: 261 --IAAFIAEPVMGAGGVIPPPATYFEKIQAVLKK---YDILFIADEVICAFGRLGTMFGC 315
Query: 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCA 734
D PD+ K L+ +P+ A L + + D S KL + HG +YS H + CA
Sbjct: 316 DKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCA 375
Query: 735 AAAKSIKWFKD 745
A +++K +K+
Sbjct: 376 VALEALKIYKE 386
|
Length = 504 |
| >gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 3e-13
Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 17/185 (9%)
Query: 608 LLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667
LLQ+P + A I+EP+ G+ + D + + + + C+ + +I DE+ TG
Sbjct: 173 LLQDPN------VAAFIVEPI-QGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLG 225
Query: 668 RLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYS 727
R G D G PDI GK L+GG+ P++A LA + V +K HG +Y
Sbjct: 226 RTGKLLAHDHEGVKPDIVLLGKALSGGLYPISAVLANDDVMLV------IKPGEHGSTYG 279
Query: 728 AHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLC 787
+ L CA A ++++ K+ + N + R+ L + + V+ + G L
Sbjct: 280 GNPLACAVAVEALEVLKEEKLAENAQRLGEVFRD----GLKELLKKSPWVKEIRGKGLLN 335
Query: 788 AIELQ 792
AI
Sbjct: 336 AIVFD 340
|
Length = 400 |
| >gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase | Back alignment and domain information |
|---|
Score = 72.4 bits (177), Expect = 3e-13
Identities = 58/198 (29%), Positives = 88/198 (44%), Gaps = 15/198 (7%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A+I+EP+ GG+ + + + C +I DEV TG R G + G
Sbjct: 225 VAAIILEPI-QGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEG 283
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
PDI C K L GGV+P+ AT+AT AVF + LH ++ + L CAAA +
Sbjct: 284 VQPDILCLAKALGGGVMPIGATIATEAVFSVLFDN----PFLHTTTFGGNPLACAAALAT 339
Query: 740 IKWFKDPQTNHNIIPERRILRELWDLELIQQISSH--RTVQRVVALGTLCAIELQAAGCN 797
I + +P + ++ + L+ QQ+++ + G L AIE +
Sbjct: 340 INELLEKN-----LPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFRDN--E 392
Query: 798 AGYCLI-ELFLYNFLTTG 814
GY ELF N L G
Sbjct: 393 IGYAFAKELFQQNILVAG 410
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442 |
| >gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 4e-13
Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 21/182 (11%)
Query: 620 IGALIIEPVVHAAGGMHMVDP--LFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I A I EPV+ AGG+ +V P +++I + I ++ DEV GF R G +
Sbjct: 219 IAAFIGEPVM-GAGGV-IVPPKTYWEKIQAV-LRKYDILLVADEVICGFGRTGNMFGCET 275
Query: 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAA 736
G PDI K L+ PL+A L V+D +S K+ HG + S H + A A
Sbjct: 276 FGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVA 335
Query: 737 AKSIKWFKDPQTNHNIIPERRILRELWDL-----ELIQQISSHRTVQRVVALGTLCAIEL 791
+++ II ER ++ + ++ ++ H V V +G + A+EL
Sbjct: 336 LENLA----------IIEERDLVGNAAERGARLQARLRALADHPLVGEVRGVGLIAAVEL 385
Query: 792 QA 793
A
Sbjct: 386 VA 387
|
Length = 460 |
| >gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 6e-13
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 5/122 (4%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A+I+EP+ GG+ + + + K C +I DEV TG R G +
Sbjct: 232 VAAVILEPI-QGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHEN 290
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
PDI C K L GGV+P+ AT+AT VF + LH ++ + L CAAA +
Sbjct: 291 VQPDILCLAKALGGGVMPIGATIATEEVFSVLFDN----PFLHTTTFGGNPLACAAALAT 346
Query: 740 IK 741
I
Sbjct: 347 IN 348
|
Length = 459 |
| >gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 1e-12
Identities = 87/354 (24%), Positives = 139/354 (39%), Gaps = 82/354 (23%)
Query: 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502
E A+ECAE L + G G +R F+ G++AI +ALK+A R + +
Sbjct: 113 ETAIECAEKLTEIAG-GELNRVLFAPGGTSAIGMALKLA-RHITGNF------------- 157
Query: 503 KCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWIL 562
KV++L S+HG +L A+ G F M
Sbjct: 158 -----KVVSLWDSFHGASLDAISV---------------GGEACFRQGMGPLMAG----- 192
Query: 563 SLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI-YSSYISQNLLQNPGLKVSGCIG 621
VE R + + D SD+ Y Y+ ++ G IG
Sbjct: 193 ----------VERIPPAVSYRG--AFPDADGSDVHYADYLEYV---------IEKEGGIG 231
Query: 622 ALIIEPVVHAAGGMHMVDP--LFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLL 678
A I E V + V ++R V+E C + +I DE+ G R G T
Sbjct: 232 AFIAEAVRNTD---VQVPSKAYWKR--VREICDKHNVLLIIDEIPNGMGRTGEWFTHQAY 286
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGH-SYSAHALGCAAAA 737
G PDI C GK L GG++P+AA + T +++ L GH ++ LGCAAA
Sbjct: 287 GIEPDILCIGKGLGGGLVPIAAMI-TKDKYNT-AAQISL-----GHYTHEKSPLGCAAAL 339
Query: 738 KSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
+I+ + ++ + + + L++ + + + V +G L +EL
Sbjct: 340 ATIEVIEQ----EGLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVEL 389
|
Length = 459 |
| >gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 5e-11
Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 9/151 (5%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLL 678
+ A+ +EPV +A G F+R V+E C + ++ DEV F RLG +
Sbjct: 222 VAAVFLEPVQNAGGCFPPPPGYFER--VREICDRYDVLLVSDEVICAFGRLGEMFGCERF 279
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAK 738
G VPDI K +T G PL A +A++ +F+ F+ LHG+++ H + A A
Sbjct: 280 GYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGP--TMFLHGYTFGGHPVSAAVALA 337
Query: 739 SIKWFKDPQTNHNIIPE----RRILRELWDL 765
++ F+ ++ R L +L DL
Sbjct: 338 NLDIFEREGLLDHVRDNEPAFRATLEKLLDL 368
|
Length = 460 |
| >gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 3e-10
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I +I+EPV AG M +V P F L + +IFDEV TGF R+ + +
Sbjct: 196 IAGVIVEPV---AGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVALGGAQEY 251
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG +P+ A
Sbjct: 252 FGVEPDLTTLGKIIGGG-LPVGA 273
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 423 |
| >gnl|CDD|234625 PRK00090, bioD, dithiobiotin synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 3e-10
Identities = 52/182 (28%), Positives = 77/182 (42%), Gaps = 30/182 (16%)
Query: 154 RISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESES 213
R+SG E V + +EE +SPHLAA E GV D +E + LR L +
Sbjct: 55 RLSGLPLDY--EDVN--PYRFEEPLSPHLAAALE--GVAID---LEKISAALRR-LAQQY 104
Query: 214 ESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273
+ L +VE AGG+ P DL + +LP ILV +LG I+ T+ E+
Sbjct: 105 D--------LVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLLTLEA 156
Query: 274 LKLRGYDVVAVVFEDHGLVNEVPL------MSYLRNR--VPVL-VLPPLPQDSSNDLMEW 324
++ RG + V + P ++ L P+L LP L + E+
Sbjct: 157 IRARGLPLAGWVA---NGIPPEPGLRHAENLATLERLLPAPLLGELPYLAEAELAAAAEY 213
Query: 325 FD 326
D
Sbjct: 214 LD 215
|
Length = 222 |
| >gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 6e-10
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 10/126 (7%)
Query: 618 GCIGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675
I A+I+EPV G +V P F L + + +IFDEV TGF R+ +
Sbjct: 199 DDIAAVIVEPVAGNMG---VVPPEPGFLEGLRELTEEHGALLIFDEVITGF-RVALGGAQ 254
Query: 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAA 735
G PD+ GK++ GG+ P+ A + + + L + + S + L AA
Sbjct: 255 GYYGVEPDLTTLGKIIGGGL-PIGAFGGRAEIMEQL---APLGPVYQAGTLSGNPLAMAA 310
Query: 736 AAKSIK 741
+++
Sbjct: 311 GLATLE 316
|
Length = 432 |
| >gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 7e-10
Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 10/172 (5%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I A + EP+ AG + + + + + + C + +I DE+ TG R G D
Sbjct: 225 IAAFLFEPIQGEAGVV-IPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEE 283
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
PD+ GK L GGVIP++A LA V +K HG ++ + L A A +
Sbjct: 284 VRPDVVILGKALGGGVIPVSAVLADKDVMLC------IKPGEHGSTFGGNPLASAVAMAA 337
Query: 740 IKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
++ +D + + LR+ L+ IQ+ + ++ V G L A+ L
Sbjct: 338 LQVVQDEKLAERSAKLGQELRD--QLQKIQKQFP-KLIKEVRGRGLLNAVVL 386
|
Length = 474 |
| >gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 9e-10
Identities = 43/128 (33%), Positives = 56/128 (43%), Gaps = 10/128 (7%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+I+EP+ GG+ DP F + L + C +IFDEV TG R G G
Sbjct: 182 AVIVEPI-QGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVT 240
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSF-VGDSKLKALLHGHSYSAHALGCAAAAKSI 740
PDI K L GG P+ A L T + VG HG +Y + L CA A K +
Sbjct: 241 PDILTSAKALGGG-FPIGAMLTTTEIAAHLKVGT-------HGTTYGGNPLACAVAGKVL 292
Query: 741 KWFKDPQT 748
P+
Sbjct: 293 DLVNTPEL 300
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397 |
| >gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 14/177 (7%)
Query: 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675
G A+ +EPV GG++ F + L C ++FDEV G R G
Sbjct: 164 QKGKTAAVFVEPV-QGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAH 222
Query: 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV-GDSKLKALLHGHSYSAHALGCA 734
+ G PDI K L GG +P+ A L T V + GD HG +++ L C
Sbjct: 223 EAYGVEPDIMTLAKPLAGG-LPIGAVLVTEKVASAINPGD-------HGSTFAGGPLVCN 274
Query: 735 AAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
AA + P ++ + LREL L +++ + V+ V +G L I+L
Sbjct: 275 AALAVLDKISKPGFLASVAKKGEYLREL----LRRKLGGNPHVKEVRGVGLLVGIQL 327
|
Length = 382 |
| >gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 2e-09
Identities = 90/371 (24%), Positives = 137/371 (36%), Gaps = 83/371 (22%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A F H F YE + AE L + ++ F ++G+ A+E A+K+A R ++
Sbjct: 62 VAEFTHTCFMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIA-RSYT-- 118
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
G+ V+A +HG T M A P+ SG G F
Sbjct: 119 --------GRPG--------VVAFDHGFHGRTNMTMALTAKV-------MPYKSGFGPF- 154
Query: 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608
P V+ LP + Y + K ++ +LA+ + ++
Sbjct: 155 -APEVYR------APLP-YPYRDGLLDKQLST------------DGELAAARAIFVIDVG 194
Query: 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668
N + AL+IEPV GG + F L+ C+ I I DEV TGF R
Sbjct: 195 ANN--------VAALVIEPV-QGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFAR 245
Query: 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS-FVGDSKLKALLHGHSYS 727
G + G PD+ K L G +PL+ + D+ G G +Y+
Sbjct: 246 TGAMFACEHEGPEPDLITTAKSLADG-LPLSGVTGRAEIMDAPAPGGL-------GGTYA 297
Query: 728 AHALGCAAAAKSIKWFKDPQTNHNIIPE-------RRILRELWDLELIQQISSHRTVQRV 780
+ L CAAA + II R+I R + D L + + V
Sbjct: 298 GNPLACAAALAVL----------AIIESEGLIERARQIGRLVTD-RLTTLKAVDPRIGDV 346
Query: 781 VALGTLCAIEL 791
LG + A+EL
Sbjct: 347 RGLGAMIAVEL 357
|
This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420 |
| >gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 3e-09
Identities = 81/342 (23%), Positives = 126/342 (36%), Gaps = 92/342 (26%)
Query: 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCI---ELKVLALKGSYHGDTLGAMEA 526
G+ A+E A+K+A RK+ + K I + +++ KG++HG TLGA+
Sbjct: 103 GAEAVETAIKLA-RKWGYK-------------VKGIPENQAIIVSAKGNFHGRTLGAISM 148
Query: 527 QA-PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDE 585
P T F G ++ YN
Sbjct: 149 STDPDSRTNF---------GPYVPGFKKIPYN---------------------------- 171
Query: 586 IFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645
+ L L++ G V A I+EP+ AG + D ++
Sbjct: 172 ------NLEALEEA---------LEDHGPNVC----AFIVEPIQGEAGVVVPDDGYLKK- 211
Query: 646 LVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLAT 704
V+E C + +I DE+ TG R G D PDI GK L+GGV P++A LA
Sbjct: 212 -VRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVLLGKALSGGVYPVSAVLAD 270
Query: 705 NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWD 764
+ V + K HG +Y + L CA A +++ ++ + N I R+
Sbjct: 271 DDVMLTI------KPGEHGSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFRD--Q 322
Query: 765 LELIQQISSHRTVQRVVALGTLCAIEL--QAAGCNA-GYCLI 803
L+ + + V G L AI + G A CL
Sbjct: 323 LKKLP----KPIITEVRGRGLLNAIVIDESKTGRTAWDLCLK 360
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401 |
| >gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 8e-09
Identities = 36/122 (29%), Positives = 48/122 (39%), Gaps = 18/122 (14%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL-- 677
A++IEP+ GG+ F + L + C + +IFDEV G R T L
Sbjct: 176 TAAILIEPI-QGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGR-----TGKLFA 229
Query: 678 ---LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCA 734
G PDI K + GG PL A LAT + HG +Y + L A
Sbjct: 230 HEWAGVTPDIMAVAKGIGGG-FPLGACLATEEA------AKGMTPGTHGSTYGGNPLAMA 282
Query: 735 AA 736
Sbjct: 283 VG 284
|
Length = 389 |
| >gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 31/168 (18%)
Query: 362 WWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ-----GPDAT 416
W P TQ K E + ++ GE +Y ++ DA +SWW P
Sbjct: 23 WHPCTQMK--HHERLPLLPVARGEGAWLYDRDGRRY----LDAISSWWVNLFGHANPRIN 76
Query: 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 476
++ D H M +EPA+E AE L G G A+F+ +G++A+EI
Sbjct: 77 AALKDQLDT------LEHAMLAGCTHEPAIELAERLAALTG-GTLGHAFFASDGASAVEI 129
Query: 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524
ALKM+F + + + + + L YHG+T+GA+
Sbjct: 130 ALKMSFHAWR-------------NRGRGDKREFVCLANGYHGETIGAL 164
|
Length = 453 |
| >gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 79/306 (25%), Positives = 112/306 (36%), Gaps = 69/306 (22%)
Query: 431 RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490
RF H YE + AE L V +A + F G+ A+E A+K+A
Sbjct: 71 RFTHTCHQVVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIA--------- 121
Query: 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550
+ T + V+A G +HG T M TG + P+ G G
Sbjct: 122 -------RAATGRS---AVIAFGGGFHGRTFMGMS------LTGKVV-PYKVGFGA---- 160
Query: 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610
M + + P L+ VE + + D++F + D +A+I
Sbjct: 161 ----MMPDVYHVPFPVELHGVSVEQ---SLAALDKLFKADVDPQRVAAI----------- 202
Query: 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670
IIEPV GG + F + L + C I +I DEV TGF R G
Sbjct: 203 -------------IIEPV-QGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTG 248
Query: 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHA 730
+ D+ K L GG PLAA + D+ G L G +Y +
Sbjct: 249 KLFAMEHHEVAADLTTMAKGLAGG-FPLAAVTGRAEIMDA-PGPGGL-----GGTYGGNP 301
Query: 731 LGCAAA 736
LG AAA
Sbjct: 302 LGIAAA 307
|
Length = 425 |
| >gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 2e-08
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I A+I+EPV AG M +V P F L + C +IFDEV TGF R+ +
Sbjct: 198 IAAVIVEPV---AGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGAQGY 253
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG +P+ A
Sbjct: 254 YGVTPDLTTLGKIIGGG-LPVGA 275
|
Length = 426 |
| >gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 41/128 (32%), Positives = 54/128 (42%), Gaps = 10/128 (7%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+++EP+ GG+ P F + L + C +IFDEV TG R G G
Sbjct: 187 AVVVEPI-QGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVT 245
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSF-VGDSKLKALLHGHSYSAHALGCAAAAKSI 740
PDI K L GG P+ A L T + F VG HG +Y + L CA A
Sbjct: 246 PDILTSAKALGGG-FPIGAMLTTAEIASHFKVG-------THGSTYGGNPLACAVAEAVF 297
Query: 741 KWFKDPQT 748
P+
Sbjct: 298 DIINTPEV 305
|
Length = 403 |
| >gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 49/172 (28%), Positives = 74/172 (43%), Gaps = 12/172 (6%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+++E +V G+ D F + L CQ I +I DEV TG R G + G
Sbjct: 168 AVMLE-LVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIE 226
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIK 741
PDI K L GV P+ A LA +++ +F S HG ++ + L AAA+ ++
Sbjct: 227 PDIFTLAKGLANGV-PVGAMLAKSSLGGAFGYGS------HGSTFGGNKLSMAAASATLD 279
Query: 742 WFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQA 793
+ L+E +L + + TV V LG + IE A
Sbjct: 280 IMLTAGFLEQALENGNYLQE----QLQKALQDKETVTTVRGLGYMIGIETTA 327
|
Length = 375 |
| >gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 5e-08
Identities = 82/363 (22%), Positives = 141/363 (38%), Gaps = 66/363 (18%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
++ H F +YEP +E AE L + + F ++G+ A+E A+K+A RK++
Sbjct: 83 VDQYIHTGFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIA-RKYT-K 140
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
+ ++ F +G +HG TL M + +P+ G G F
Sbjct: 141 RQGIISFS----------------RG-FHGRTLMTMTMTSKV-------KPYKFGFGPF- 175
Query: 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608
P V+ + PE +T D+ EE + ++ + I+
Sbjct: 176 -APEVYKAPFPYEYRRPE----------GLTEEQYDDFMIEEFKNFFISEVAPETIA--- 221
Query: 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668
A+++EPV GG + F + + C I + DE+ TGF R
Sbjct: 222 -------------AVVMEPV-QGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFAR 267
Query: 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSA 728
G + VPD+ K L GV P++ + + D +L G +Y+
Sbjct: 268 TGKYFAIEHFDVVPDLITVSKSLGAGV-PISGVIGRKEIMDE-SAPGEL-----GGTYAG 320
Query: 729 HALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCA 788
LGCAAA + + N I +++ + E+ + + + V LG +CA
Sbjct: 321 SPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRF-EEMKNK---YNCIGDVRGLGAMCA 376
Query: 789 IEL 791
EL
Sbjct: 377 FEL 379
|
Length = 451 |
| >gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 6e-08
Identities = 47/181 (25%), Positives = 74/181 (40%), Gaps = 24/181 (13%)
Query: 620 IGALIIEPVVHAAGGMHMVD----PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675
+ + EP AGGM P QRI C+ + + DEV GF R G
Sbjct: 223 VAGFVAEPF-QGAGGMIFPPESYWPEIQRI----CRQYDVLLCADEVIGGFGRTGEWFAH 277
Query: 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAA 735
+ G PD K LT G +P+ + + + ++ V + A HG +YS H + A
Sbjct: 278 EHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFA--HGLTYSGHPVAAAV 335
Query: 736 AAKSIKWFKDP----QTNHNIIPE-RRILRELWDLELIQQISSHRTVQRVVALGTLCAIE 790
A ++K +D + + P +R LRE++ H V V G + A++
Sbjct: 336 AIANLKALRDEGVVTRVKDDTGPYLQRCLREVF--------GDHPLVGEVQGAGLVAALQ 387
Query: 791 L 791
Sbjct: 388 F 388
|
Length = 460 |
| >gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 39/118 (33%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+I+EP+ GG+ D F + L + C +IFDEV TG R G G
Sbjct: 186 AVIVEPIQ-GEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVT 244
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSF-VGDSKLKALLHGHSYSAHALGCAAAAK 738
PD+ K L GG P+ A L T VG HG +Y + L A A K
Sbjct: 245 PDVLTTAKALGGG-FPIGAMLTTEKCASVMTVGT-------HGTTYGGNPLASAVAGK 294
|
Length = 406 |
| >gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-07
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 16/148 (10%)
Query: 650 CQNRKIPVIFDEVFTGFWRLGVETTADLLGC-----VPDIACYGKLLTGGVIPLAATLAT 704
C+ I + DEV TGF R T L C VPD+ K LT G +P+ A L +
Sbjct: 245 CRELGILFVADEVITGFGR-----TGPLFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMS 299
Query: 705 NAVFDSFVGDSKLKALL-HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELW 763
+ V+ + A + HG++YSAH + A + ++ + + N ++ R
Sbjct: 300 DHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLAN--GQKAGPRFAA 357
Query: 764 DLELIQQISSHRTVQRVVALGTLCAIEL 791
L+ + +H V V G L A+EL
Sbjct: 358 GLD---ALRAHPLVGDVRGRGLLGALEL 382
|
Length = 459 |
| >gnl|CDD|223210 COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 18/133 (13%)
Query: 154 RISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESES 213
R+SG + S EL+ + ++E +SPHLAAE E G + +E L + LR L+
Sbjct: 58 RLSGLDLSY--ELIN--PYRFKEPLSPHLAAELE-----GRTIDLEKLSQGLRQLLK--- 105
Query: 214 ESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273
K +++ +VE AGG+ P DL +LP ILV +LG I+ T+ E+
Sbjct: 106 -----KYDLV-LVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKLGTINHTLLTVEA 159
Query: 274 LKLRGYDVVAVVF 286
L+ RG + V
Sbjct: 160 LRARGLPLAGWVA 172
|
Length = 223 |
| >gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 80/356 (22%), Positives = 130/356 (36%), Gaps = 96/356 (26%)
Query: 440 NVYEPAL--ECAELLLQG-VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496
N++ +L E A LL + G +F ++G+ A E ALK+A RK +
Sbjct: 66 NLFTNSLQEEVASLLAENSAGD----LVFFCNSGAEANEAALKLA-RKHTGKS------- 113
Query: 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556
K++ + S+HG T G M A TG Q+ G G P
Sbjct: 114 -----------KIVTFEQSFHGRTFGTMSA------TG--QEKIKEGFG-----PL---- 145
Query: 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKV 616
LP + + V DI + E + ++A++
Sbjct: 146 -------LPGFTH---VPFNDI------KALKEVMN-EEVAAV----------------- 171
Query: 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676
++E VV GG+ DP F + + C+ +I DEV TG R G +
Sbjct: 172 -------MLE-VVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYE 223
Query: 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAA 736
G PDI K L G IP+ A + + +F S HG ++ + L AAA
Sbjct: 224 QFGLDPDIVTVAKGLGNG-IPVGAMIGKKELGTAFGPGS------HGSTFGGNPLAMAAA 276
Query: 737 AKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQ 792
+ ++ K P + + + L +++ V+ + G + IE
Sbjct: 277 KEVLQVIKQPSFLEEVQEKGEYFLQK----LQEELEHLECVKNIRGKGLMIGIECT 328
|
Length = 377 |
| >gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 25/98 (25%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
A GHV N++ EP + AE L++ +G R +F ++G+ A E A K+A
Sbjct: 72 LATLGHV---SNLFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLT-- 126
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524
G+ K++A +G +HG T+GA+
Sbjct: 127 ----------GRT--------KIVAAEGGFHGRTMGAL 146
|
Length = 398 |
| >gnl|CDD|222178 pfam13500, AAA_26, AAA domain | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 4e-07
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLP 98
T + +T +GKT+VS GL + K Y KPIQ+G D DS + +L
Sbjct: 2 TIFVTGTDTGVGKTVVSLGLVRAL------KRGVKVGYWKPIQSGLVDDGDSELV-KRLL 54
Query: 99 SLSLRRNFPSSLILS 113
L R P LS
Sbjct: 55 GLDQTREHPEPYRLS 69
|
This domain is found in a number of proteins involved in cofactor biosynthesis such as dethiobiotin synthase and cobyric acid synthase. This domain contains a P-loop motif. Length = 197 |
| >gnl|CDD|129447 TIGR00347, bioD, dethiobiotin synthase | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 4e-07
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 172 FAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGG 231
+A+ +SPH+AA++E + D + + L + + K + + +VE AGG
Sbjct: 65 YAFALPLSPHIAADQEGRPI--DLEELS-------KHLRTLEQ----KYDFV-LVEGAGG 110
Query: 232 VASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVV 285
+ P DL + +LP ILV +LG I+ T+ E + G + V+
Sbjct: 111 LCVPITEEYTTADLIKLLQLPVILVVRVKLGTINHTLLTVEHARQTGLTLAGVI 164
|
Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 166 |
| >gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 21/177 (11%)
Query: 622 ALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
A ++EP+ AG + P F + + C+ + I DE+ TG R G D
Sbjct: 189 AFLVEPIQGEAG---INIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDN 245
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
PD+ GK L GGV P++ A + F S HG ++ + L CA + +
Sbjct: 246 VTPDMYILGKALGGGVFPISCVAANRDILGVFTPGS------HGSTFGGNPLACAVSIAA 299
Query: 740 IKWFKDPQTNHNIIPERRILRELWD--LELIQQISSHRTVQRVVALGTLCAIELQAA 794
++ ++ + +PER + EL + E +++I + ++ V G +EL
Sbjct: 300 LEVLEEEK-----LPERSL--ELGEYFKEQLKEI-DNPMIKEVRGRGLFIGVELNEP 348
|
Length = 396 |
| >gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 6e-07
Identities = 40/115 (34%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+++EPV GG+ F + L + + +I DEV TG R G +L G
Sbjct: 182 AVMLEPV-QGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIE 240
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSFV-GDSKLKALLHGHSYSAHALGCAA 735
PDI GK + GGV PLAA LA V F GD G +Y+ + L A
Sbjct: 241 PDIMTLGKGIGGGV-PLAALLAKAEV-AVFEAGD-------QGGTYNGNPLMTAV 286
|
Length = 395 |
| >gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-06
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502
EPA A+ L+ G YF GS A+E ALK+A R++ F+ +
Sbjct: 73 EPAEALADRLVAAAPAG-LEHVYFVSGGSEAVEAALKLA-RQY---------FVEIGQPQ 121
Query: 503 KCIELKVLALKGSYHGDTLGAMEA 526
+ +A + SYHG+TLGA+
Sbjct: 122 R---RHFIARRQSYHGNTLGALAI 142
|
Length = 443 |
| >gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-06
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
Query: 604 ISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDE 661
I Q ++ + G +V+G +I EP+ M +V P F +++ C+ I DE
Sbjct: 190 IFQTVMNSLGHRVAG----VIFEPI---CANMGVVLPKPGFIEGIIQTCRRTGSLSIMDE 242
Query: 662 VFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFD 709
V TGF R+ A + PDI YGK+L GG +P AA +A ++ D
Sbjct: 243 VVTGF-RVAQGGAAAIYHVKPDITVYGKILGGG-LPAAAVVAHKSIMD 288
|
Length = 433 |
| >gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-06
Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 14/124 (11%)
Query: 620 IGALIIEPVVHAAGGMHMVDP---LFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676
+ AL EP+ AG M+ P F++ L K I ++ DEV +G R G +
Sbjct: 205 VAALFAEPIQGDAG---MIVPPEDYFKK-LKKILDEHGILLVVDEVQSGLGRTGKWFAIE 260
Query: 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAA 736
G PDI GK L GG +P++AT+ + DS L L H + S + + AAA
Sbjct: 261 HFGVEPDIITLGKPLGGG-LPISATIGRAEIMDS------LPPLAHAFTLSGNPVASAAA 313
Query: 737 AKSI 740
I
Sbjct: 314 LAVI 317
|
Length = 443 |
| >gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680
A ++EP+ AG + F R V+E C + +I DE+ TG R G + G
Sbjct: 190 AFLVEPIQGEAGVIIPPAGYFTR--VRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGI 247
Query: 681 VPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSI 740
D+ GK L+GG P++A L+ + V LK HG ++ + L CA A ++
Sbjct: 248 EADVTLIGKALSGGFYPVSAVLSNSEVL------GVLKPGQHGSTFGGNPLACAVARAAL 301
Query: 741 K 741
K
Sbjct: 302 K 302
|
Length = 401 |
| >gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 12/174 (6%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+IIEP+ GG + F L++ C+ + I DEV TGF R G + G V
Sbjct: 222 AVIIEPI-QGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIV 280
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIK 741
PD+ K + GG +PL+A + D+ L G +Y + + CAAA +I+
Sbjct: 281 PDLITTAKGIAGG-LPLSAVTGRAEIMDA-PHPGGL-----GGTYGGNPVACAAALAAIE 333
Query: 742 WFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795
+ +++ R + L L + + V G + AIEL G
Sbjct: 334 TIE----EDDLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPG 383
|
Length = 443 |
| >gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
G I A+I+EPVV +G + + F L + + ++FDEV TGF R+ +
Sbjct: 245 GEIAAVILEPVVGNSGFI-VPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEY 302
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG +P+ A
Sbjct: 303 FGITPDLTTLGKVIGGG-LPVGA 324
|
Length = 474 |
| >gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAG--GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
+ A+++EP+V G G+ P F + + VI+DEV T F R DL
Sbjct: 201 VAAVLVEPIV---GNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDL 256
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
LG PD+ GK++ GG +P+ A
Sbjct: 257 LGVEPDLTALGKIIGGG-LPIGA 278
|
Length = 428 |
| >gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 7e-05
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A+++EP+ GG ++ P F L C I +I DEV TGF R G +
Sbjct: 199 VAAILLEPI-QGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYD 257
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
PD+ K L GG +P++A + V D+
Sbjct: 258 VKPDLITMAKSLGGG-MPISAVVGRAEVMDA 287
|
Length = 421 |
| >gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 49/180 (27%), Positives = 72/180 (40%), Gaps = 35/180 (19%)
Query: 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ 411
D+ A W FT+H + V VI GE ++ D+ +++ D A +
Sbjct: 11 DLQALAKRHLWMHFTRHGAYIDAPVPVIV--RGEGCYIWDDRGKRYL----DGLAGLFV- 63
Query: 412 GPDATLQI-----ELARDMGYTAARFGHVMFPENVY--EPALECAELLLQGVGKGWASRA 464
+Q+ ELA A FP Y PA+E AE L + G +R
Sbjct: 64 -----VQVGHGRAELAEAAAKQAGTLAF--FPLWSYAHPPAIELAERL-AALAPGDLNRV 115
Query: 465 YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524
+F+ GS A+E A K+A + F GK K I + +YHG T GA+
Sbjct: 116 FFTTGGSEAVESAWKLAKQYFKL--------TGKPGKHKVISRAI-----AYHGTTQGAL 162
|
Length = 460 |
| >gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 22/123 (17%)
Query: 420 ELARDMGYTAARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477
EL + + A + H+ N Y EP L A+ L V +A + +F ++G+ A E A
Sbjct: 55 ELVKALIEQADKLWHI---GNGYTNEPVLRLAKKL---VDATFADKVFFCNSGAEANEAA 108
Query: 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT-GFL 536
LK+A R+++ D G D +E ++A K S+HG TL + Y+ GF
Sbjct: 109 LKLA-RRYALDK------HGADKSE------IVAFKNSFHGRTLFTVSVGGQPKYSQGFA 155
Query: 537 QQP 539
P
Sbjct: 156 PLP 158
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397 |
| >gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 14/154 (9%)
Query: 601 SSYISQNLLQNPGLKVSGCI--GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658
S +N +++ SG A+I+E + GG+ + + + + + I +I
Sbjct: 189 SIEYFENFIEDVE---SGVDKPAAVILE-AIQGEGGVVAAPSEWLQKIREVTRKHDIKLI 244
Query: 659 FDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLK 718
DEV GF R G + G PD K + GG +PLA L FD++
Sbjct: 245 LDEVQAGFGRSGTMFAFEHAGIEPDFVVMSKAVGGG-LPLAVLLIAPE-FDAWQPAG--- 299
Query: 719 ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752
H ++ + L +++ ++KD N
Sbjct: 300 ---HTGTFRGNQLAMVTGTEALNYWKDDNLAQNA 330
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442 |
| >gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
A HV NVY P +E A+ L V +A R +F ++G+ A E A+K A RK+
Sbjct: 44 AGTLAHV---SNVYHTIPQVELAKRL---VASSFADRVFFCNSGTEANEAAIKFA-RKY- 95
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524
V E ++ S+HG TLGA+
Sbjct: 96 --QRVRAPDKKDPAASSATEF--VSFSNSFHGRTLGAL 129
|
Length = 382 |
| >gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I I EP+ G H P F R + C +IFDEV TG G LG
Sbjct: 219 IACFIAEPIQGEGGDNHF-RPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLG 277
Query: 680 CVPDIACYGK 689
PDI +GK
Sbjct: 278 VQPDIVAFGK 287
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431 |
| >gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 18/84 (21%)
Query: 440 NVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
NV+ EPAL A+ L + +A R +F+++G+ A E A K+A R+++ D G
Sbjct: 77 NVFTNEPALRLAKKL---IDATFAERVFFANSGAEANEAAFKLA-RRYACDR------HG 126
Query: 498 KDTTEKCIELKVLALKGSYHGDTL 521
+ TE ++A S+HG TL
Sbjct: 127 PEKTE------IIAFHNSFHGRTL 144
|
Length = 403 |
| >gnl|CDD|239383 cd03109, DTBS, Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 225 IVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAV 284
+VE AGG+ P D+ + LP ILV LG I+ E+ +++G + V
Sbjct: 43 LVEGAGGLCVPLKEDFTNADVAKELNLPAILVTSAGLGSINHAFLTIEAARIKGIILNGV 102
Query: 285 VFEDHGLVNEVPLMSYLRNRVPVLVLPPLP 314
+ E + + +P L
Sbjct: 103 LGNVIVE-KEGLATLNVETIERLTGIPVLG 131
|
The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors. Length = 134 |
| >gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 30/125 (24%)
Query: 420 ELARDMGYTAARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477
L + A++F H N Y EP L A+ L+ +A R +F ++G+ A E A
Sbjct: 59 ALREALNEQASKFWHT---GNGYTNEPVLRLAKKLIDAT---FADRVFFCNSGAEANEAA 112
Query: 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537
LK+A RK++ D G + ++A K ++HG TL + A
Sbjct: 113 LKLA-RKYAHDR------YGSHKSG------IVAFKNAFHGRTLFTVSAGG--------- 150
Query: 538 QPWYS 542
QP YS
Sbjct: 151 QPKYS 155
|
Length = 406 |
| >gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ ++IE + GG+ P + L K C+ I D++ G R G ++
Sbjct: 208 VACIVIETI-QGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFN 266
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
PD+ +GK L GG +P++A + + +S L+A H + A+ + CAAA +
Sbjct: 267 ITPDLMSFGKSLAGG-MPMSAIVGRKEIMES------LEAPAHLFTTGANPVSCAAALAT 319
Query: 740 IKWFKD 745
I +D
Sbjct: 320 IDMIED 325
|
Length = 445 |
| >gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 29/122 (23%)
Query: 429 AARFGHVMFPENVYE-PALE-CAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
A + HV N+Y P E AE L V +A + +F+++G+ A+E A+K A R++
Sbjct: 60 AEKLWHV---SNLYRIPEQERLAERL---VENSFADKVFFTNSGAEAVECAIKTA-RRYH 112
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT--------GFLQQ 538
+ GK E+ +++ +G++HG TL + A Y GF Q
Sbjct: 113 Y---------GKGHPER---YRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQV 160
Query: 539 PW 540
P+
Sbjct: 161 PF 162
|
Length = 389 |
| >gnl|CDD|223210 COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 46 NTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTG---YPHDSDSRFLFTKLPSLSL 102
+T +GKT+VSA L KP+QTG +SD+ L +L L L
Sbjct: 11 DTGVGKTVVSAAL-----AQALKQQGYSVAGYKPVQTGSEETAENSDALVL-QRLSGLDL 64
Query: 103 RRNFPSSLILS 113
+
Sbjct: 65 SYELINPYRFK 75
|
Length = 223 |
| >gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 19/79 (24%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG------FW---RLG 670
I I EP+ GG + P F + + C +IFDEV TG W +LG
Sbjct: 226 IACFIAEPI-QGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLG 284
Query: 671 VETTADLLGCVPDIACYGK 689
V PDI +GK
Sbjct: 285 VR---------PDIVAFGK 294
|
Length = 443 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 817 | |||
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 100.0 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 100.0 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 100.0 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 100.0 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 100.0 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 100.0 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 100.0 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 100.0 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK07678 | 451 | aminotransferase; Validated | 100.0 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 100.0 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 100.0 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 100.0 | |
| PRK06105 | 460 | aminotransferase; Provisional | 100.0 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 100.0 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 100.0 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 100.0 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 100.0 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 100.0 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 100.0 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 100.0 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 100.0 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 100.0 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 100.0 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 100.0 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 100.0 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 100.0 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 100.0 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 100.0 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 100.0 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 100.0 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 100.0 | |
| PRK07046 | 453 | aminotransferase; Validated | 100.0 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 100.0 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 100.0 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 100.0 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 100.0 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 100.0 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 100.0 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 100.0 | |
| PLN00144 | 382 | acetylornithine transaminase | 100.0 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 100.0 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 100.0 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 100.0 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 100.0 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 100.0 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 100.0 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 100.0 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 100.0 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 100.0 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 100.0 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 100.0 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 100.0 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 100.0 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 100.0 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 100.0 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 100.0 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 100.0 | |
| COG0132 | 223 | BioD Dethiobiotin synthetase [Coenzyme metabolism] | 100.0 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 100.0 | |
| PF13500 | 199 | AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R | 100.0 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.98 | |
| PRK12374 | 231 | putative dithiobiotin synthetase; Provisional | 99.97 | |
| PRK00090 | 222 | bioD dithiobiotin synthetase; Reviewed | 99.97 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.96 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.96 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.95 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.95 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.95 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.95 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.95 | |
| PRK00784 | 488 | cobyric acid synthase; Provisional | 99.94 | |
| TIGR00313 | 475 | cobQ cobyric acid synthase CobQ. | 99.91 | |
| TIGR00347 | 166 | bioD dethiobiotin synthase. Dethiobiotin synthase | 99.91 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.9 | |
| PRK06278 | 476 | cobyrinic acid a,c-diamide synthase; Validated | 99.9 | |
| PRK13896 | 433 | cobyrinic acid a,c-diamide synthase; Provisional | 99.89 | |
| COG1797 | 451 | CobB Cobyrinic acid a,c-diamide synthase [Coenzyme | 99.89 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.89 | |
| PRK01077 | 451 | cobyrinic acid a,c-diamide synthase; Validated | 99.88 | |
| TIGR00379 | 449 | cobB cobyrinic acid a,c-diamide synthase. This mod | 99.88 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.87 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.87 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.86 | |
| COG1492 | 486 | CobQ Cobyric acid synthase [Coenzyme metabolism] | 99.86 | |
| cd03109 | 134 | DTBS Dethiobiotin synthetase (DTBS) is the penulti | 99.84 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.84 | |
| PRK05632 | 684 | phosphate acetyltransferase; Reviewed | 99.84 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.82 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.82 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.82 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.82 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.8 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.74 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.67 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.61 | |
| COG0857 | 354 | Pta BioD-like N-terminal domain of phosphotransace | 99.48 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.42 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.38 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.36 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.35 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.34 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.32 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.29 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.28 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.23 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.21 | |
| PLN02721 | 353 | threonine aldolase | 99.19 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.19 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.14 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.13 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.12 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.11 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.09 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.09 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.09 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.08 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.06 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.06 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.04 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.04 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.02 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.02 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.01 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.0 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 98.97 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 98.96 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 98.96 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 98.95 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 98.95 | |
| PRK07324 | 373 | transaminase; Validated | 98.95 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 98.95 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 98.94 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 98.94 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 98.94 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 98.93 | |
| PLN02242 | 418 | methionine gamma-lyase | 98.91 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.91 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.9 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 98.89 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 98.88 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 98.87 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 98.87 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 98.86 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 98.86 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 98.85 | |
| PRK07777 | 387 | aminotransferase; Validated | 98.85 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 98.84 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 98.84 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 98.84 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 98.83 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 98.82 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 98.82 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 98.82 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 98.81 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 98.8 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 98.79 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 98.79 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 98.78 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 98.78 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 98.77 | |
| PLN02651 | 364 | cysteine desulfurase | 98.77 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 98.76 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 98.76 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 98.76 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 98.75 | |
| PLN02509 | 464 | cystathionine beta-lyase | 98.73 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 98.73 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 98.73 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 98.72 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 98.72 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 98.72 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 98.71 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 98.71 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.71 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 98.71 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 98.71 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 98.7 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 98.7 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 98.69 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 98.69 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 98.65 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 98.65 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 98.65 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 98.65 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 98.65 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 98.65 | |
| PRK08068 | 389 | transaminase; Reviewed | 98.63 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 98.61 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 98.6 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 98.6 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 98.6 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 98.59 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 98.59 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 98.59 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 98.59 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 98.58 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 98.58 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 98.58 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 98.57 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 98.57 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.54 | |
| PLN02656 | 409 | tyrosine transaminase | 98.53 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 98.53 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 98.53 | |
| TIGR01969 | 251 | minD_arch cell division ATPase MinD, archaeal. Thi | 98.53 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 98.52 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 98.52 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 98.52 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 98.51 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 98.5 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 98.5 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 98.5 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 98.5 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 98.5 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 98.49 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 98.48 | |
| TIGR01007 | 204 | eps_fam capsular exopolysaccharide family. This mo | 98.48 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 98.48 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 98.48 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 98.48 | |
| PRK07683 | 387 | aminotransferase A; Validated | 98.47 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 98.47 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 98.47 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 98.47 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 98.46 | |
| PRK09148 | 405 | aminotransferase; Validated | 98.46 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.46 | |
| PRK08175 | 395 | aminotransferase; Validated | 98.45 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 98.45 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 98.45 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 98.44 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 98.43 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 98.43 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 98.42 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 98.42 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 98.42 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 98.41 | |
| CHL00175 | 281 | minD septum-site determining protein; Validated | 98.41 | |
| PRK07337 | 388 | aminotransferase; Validated | 98.4 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 98.4 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.39 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 98.38 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 98.38 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 98.38 | |
| cd02037 | 169 | MRP-like MRP (Multiple Resistance and pH adaptatio | 98.37 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 98.37 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 98.37 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 98.36 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.36 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 98.36 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 98.36 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 98.35 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 98.34 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 98.33 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 98.32 | |
| TIGR01968 | 261 | minD_bact septum site-determining protein MinD. Th | 98.31 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 98.3 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 98.3 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 98.29 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 98.29 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 98.28 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 98.28 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 98.27 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 98.27 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 98.26 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 98.26 | |
| PLN02187 | 462 | rooty/superroot1 | 98.25 | |
| COG1149 | 284 | MinD superfamily P-loop ATPase containing an inser | 98.24 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 98.24 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 98.23 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 98.23 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 98.22 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 98.22 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 98.21 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 98.2 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 98.2 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 98.2 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 98.2 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 98.19 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 98.19 | |
| PRK06855 | 433 | aminotransferase; Validated | 98.18 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 98.17 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 98.15 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.14 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 98.13 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 98.11 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.1 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 98.09 | |
| cd02033 | 329 | BchX Chlorophyllide reductase converts chlorophyll | 98.09 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 98.09 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 98.08 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 98.08 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 98.06 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 98.05 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 98.05 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 98.05 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 98.05 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 98.01 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 97.99 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 97.95 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 97.95 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.93 | |
| TIGR03029 | 274 | EpsG chain length determinant protein tyrosine kin | 97.93 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 97.92 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 97.92 | |
| COG0489 | 265 | Mrp ATPases involved in chromosome partitioning [C | 97.92 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 97.91 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 97.87 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 97.86 | |
| PF01656 | 195 | CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai | 97.86 | |
| PRK11670 | 369 | antiporter inner membrane protein; Provisional | 97.85 | |
| TIGR02016 | 296 | BchX chlorophyllide reductase iron protein subunit | 97.84 | |
| TIGR03018 | 207 | pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t | 97.83 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 97.82 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 97.82 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 97.81 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 97.79 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 97.78 | |
| TIGR03815 | 322 | CpaE_hom_Actino helicase/secretion neighborhood Cp | 97.73 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 97.71 | |
| PLN02368 | 407 | alanine transaminase | 97.69 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 97.69 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 97.68 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.66 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.66 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 97.64 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.63 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 97.63 | |
| cd00550 | 254 | ArsA_ATPase Oxyanion-translocating ATPase (ArsA). | 97.62 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 97.59 | |
| PRK11519 | 719 | tyrosine kinase; Provisional | 97.58 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 97.58 | |
| PRK09841 | 726 | cryptic autophosphorylating protein tyrosine kinas | 97.58 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 97.56 | |
| PRK14494 | 229 | putative molybdopterin-guanine dinucleotide biosyn | 97.55 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.55 | |
| cd02117 | 212 | NifH_like This family contains the NifH (iron prot | 97.51 | |
| PLN02231 | 534 | alanine transaminase | 97.49 | |
| COG2894 | 272 | MinD Septum formation inhibitor-activating ATPase | 97.45 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 97.43 | |
| PRK13185 | 270 | chlL protochlorophyllide reductase iron-sulfur ATP | 97.42 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 97.42 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 97.4 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 97.4 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 97.34 | |
| COG1348 | 278 | NifH Nitrogenase subunit NifH (ATPase) [Inorganic | 97.33 | |
| PLN02880 | 490 | tyrosine decarboxylase | 97.32 | |
| TIGR01281 | 268 | DPOR_bchL light-independent protochlorophyllide re | 97.3 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 97.29 | |
| CHL00072 | 290 | chlL photochlorophyllide reductase subunit L | 97.29 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 97.28 | |
| COG0455 | 262 | flhG Antiactivator of flagellar biosynthesis FleN, | 97.26 | |
| cd02032 | 267 | Bchl_like This family of proteins contains bchL an | 97.26 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 97.24 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 97.23 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 97.19 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 97.19 | |
| PRK13232 | 273 | nifH nitrogenase reductase; Reviewed | 97.19 | |
| cd02040 | 270 | NifH NifH gene encodes component II (iron protein) | 97.18 | |
| KOG3022 | 300 | consensus Predicted ATPase, nucleotide-binding [Ce | 97.16 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.12 | |
| cd02035 | 217 | ArsA ArsA ATPase functionas as an efflux pump loca | 97.09 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 96.99 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 96.95 | |
| TIGR03371 | 246 | cellulose_yhjQ cellulose synthase operon protein Y | 96.93 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 96.91 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 96.91 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 96.88 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 96.88 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 96.87 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 96.84 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 96.83 | |
| PHA02518 | 211 | ParA-like protein; Provisional | 96.83 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 96.81 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 96.79 | |
| PRK13230 | 279 | nitrogenase reductase-like protein; Reviewed | 96.79 | |
| TIGR01287 | 275 | nifH nitrogenase iron protein. This model describe | 96.73 | |
| PRK14495 | 452 | putative molybdopterin-guanine dinucleotide biosyn | 96.71 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 96.7 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 96.69 | |
| PRK10818 | 270 | cell division inhibitor MinD; Provisional | 96.64 | |
| TIGR00176 | 155 | mobB molybdopterin-guanine dinucleotide biosynthes | 96.6 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 96.6 | |
| cd03116 | 159 | MobB Molybdenum is an essential trace element in t | 96.6 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 96.59 | |
| PRK13231 | 264 | nitrogenase reductase-like protein; Reviewed | 96.59 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 96.55 | |
| PRK13233 | 275 | nifH nitrogenase reductase; Reviewed | 96.54 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.53 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 96.51 | |
| PRK13236 | 296 | nitrogenase reductase; Reviewed | 96.51 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 96.49 | |
| PRK13849 | 231 | putative crown gall tumor protein VirC1; Provision | 96.48 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 96.45 | |
| PRK14493 | 274 | putative bifunctional molybdopterin-guanine dinucl | 96.45 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 96.43 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 96.43 | |
| cd03113 | 255 | CTGs CTP synthetase (CTPs) is a two-domain protein | 96.33 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 96.26 | |
| PF07015 | 231 | VirC1: VirC1 protein; InterPro: IPR009744 This fam | 96.26 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 96.2 | |
| PRK13235 | 274 | nifH nitrogenase reductase; Reviewed | 96.18 | |
| PF00142 | 273 | Fer4_NifH: 4Fe-4S iron sulfur cluster binding prot | 96.15 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 96.13 | |
| PLN02397 | 423 | aspartate transaminase | 96.11 | |
| PRK13234 | 295 | nifH nitrogenase reductase; Reviewed | 96.03 | |
| PF07755 | 301 | DUF1611: Protein of unknown function (DUF1611); In | 96.0 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 95.97 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 95.96 | |
| PLN02263 | 470 | serine decarboxylase | 95.88 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 95.84 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 95.81 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 95.76 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 95.72 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 95.71 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 95.63 | |
| PRK14489 | 366 | putative bifunctional molybdopterin-guanine dinucl | 95.55 | |
| PLN02452 | 365 | phosphoserine transaminase | 95.46 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 95.43 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 95.39 | |
| PRK14491 | 597 | putative bifunctional molybdopterin-guanine dinucl | 95.37 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 95.32 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 95.24 | |
| PF06564 | 243 | YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p | 95.17 | |
| COG3367 | 339 | Uncharacterized conserved protein [Function unknow | 94.97 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 94.93 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 94.91 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 94.81 | |
| COG1763 | 161 | MobB Molybdopterin-guanine dinucleotide biosynthes | 94.59 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 94.54 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 94.38 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 94.34 | |
| COG2403 | 449 | Predicted GTPase [General function prediction only | 94.19 | |
| PRK13886 | 241 | conjugal transfer protein TraL; Provisional | 94.17 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 94.03 | |
| PRK05636 | 505 | replicative DNA helicase; Provisional | 93.89 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 93.82 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 93.77 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 93.49 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 93.49 | |
| PRK05595 | 444 | replicative DNA helicase; Provisional | 93.37 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 93.35 | |
| PHA02542 | 473 | 41 41 helicase; Provisional | 93.3 | |
| KOG2749 | 415 | consensus mRNA cleavage and polyadenylation factor | 93.29 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 93.26 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 93.26 | |
| PRK08760 | 476 | replicative DNA helicase; Provisional | 93.18 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 93.09 | |
| PRK08506 | 472 | replicative DNA helicase; Provisional | 93.01 | |
| TIGR00665 | 434 | DnaB replicative DNA helicase. This model describe | 92.99 | |
| PRK08006 | 471 | replicative DNA helicase; Provisional | 92.84 | |
| PRK09165 | 497 | replicative DNA helicase; Provisional | 92.68 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 92.67 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 92.43 | |
| PRK06904 | 472 | replicative DNA helicase; Validated | 92.38 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 92.38 | |
| TIGR03600 | 421 | phage_DnaB phage replicative helicase, DnaB family | 91.96 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 91.91 | |
| PRK06749 | 428 | replicative DNA helicase; Provisional | 91.83 | |
| PF02374 | 305 | ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_ | 91.08 | |
| PRK05748 | 448 | replicative DNA helicase; Provisional | 91.06 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 91.0 | |
| PF03796 | 259 | DnaB_C: DnaB-like helicase C terminal domain; Inte | 90.9 | |
| PF09140 | 261 | MipZ: ATPase MipZ; InterPro: IPR015223 Cell divisi | 90.59 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 90.46 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 90.39 | |
| PRK08840 | 464 | replicative DNA helicase; Provisional | 90.37 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 90.37 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 90.11 | |
| PRK10037 | 250 | cell division protein; Provisional | 90.0 | |
| PRK13768 | 253 | GTPase; Provisional | 89.95 | |
| PRK07004 | 460 | replicative DNA helicase; Provisional | 89.86 |
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-125 Score=1125.69 Aligned_cols=765 Identities=60% Similarity=0.974 Sum_probs=635.0
Q ss_pred ccCCCCCCCcCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhCCCCccc
Q 003472 24 STFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLR 103 (817)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~~~~~~~ 103 (817)
+..++....+|++.+.+|||||+||||||+||++|++++. ++|.+|.|+||||||+++++|+.++.+.+.++..+
T Consensus 14 ~~~~~~~~~~~~~~~~~fI~GtnT~VGKT~vS~~L~~~~~-----~~g~~~~y~KPvqTG~~~~~Da~~v~~~~~~~~~~ 88 (817)
T PLN02974 14 SSSSSAAGALPLSCPAFAVWGANTAVGKTLVSAGLAAAAA-----SRRSPVLYVKPVQTGFPDDSDARFVFRKADSLSRR 88 (817)
T ss_pred cCCCcccccccCCCceEEEEECCCCCCHHHHHHHHHHHHH-----HcCCceEEEEEEECCCCCCccHHHHHHhhhccccc
Confidence 3446677999999999999999999999999999999994 88999999999999998889999999876444222
Q ss_pred cCCCcccccccchhhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHH
Q 003472 104 RNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLA 183 (817)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a 183 (817)
-++++++|..|..+...+ ++++....+... +.-.|+..+. .....+..|.++|.|++|+|||+|
T Consensus 89 ---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~g~~~------~~~~~~~~~~~~~~~~~p~SPhlA 152 (817)
T PLN02974 89 ---SESLFASNRTLFLSPPAA-KSALGGVSSMGA------HAAVNAGAEA------GVTSSALWCHTLFAWRRAVSPHLA 152 (817)
T ss_pred ---cccccccccccccccccc-cccccccccccc------cccccccccc------ccccccccccCceecCCCCCHHHH
Confidence 367899999999988777 444444444433 2222222211 111334677899999999999999
Q ss_pred HhHhcCCCCChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCCh
Q 003472 184 AERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGG 263 (817)
Q Consensus 184 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~ 263 (817)
++++ |..+++++|.+.++++.++..+ .++.+.+|++|||||||+++|++.+.+++||++.+++|||||++.+||+
T Consensus 153 A~~e-g~~i~~~~i~~~~~~~l~~~~~----~~~~~~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l~lPvILV~~~~LG~ 227 (817)
T PLN02974 153 ARRE-GRGVSDDEVLEAVNRSLREVGA----NESGGGRVLALVETAGGVASPGPSGTLQCDLYRPLRLPAILVGDGRLGG 227 (817)
T ss_pred HHHh-CCCCCHHHHHHHHHHHHHhhhc----ccccccCCeEEEECCCcccccCCCCCCHHHHHHHhCCCEEEEECCCCCH
Confidence 9999 9999999999999876543100 0112348999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccCCCCCHHHHHHhhcCCCcEEecCCCCCCCcchhhhhhccchhhhhhHHHHHHHHH
Q 003472 264 ISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAY 343 (817)
Q Consensus 264 i~~~~~~~~~l~~~~~~v~gvi~n~~~~~~~~~l~~~~~~~~pvlgiP~~~~~~~~~~~~~l~~~~~~f~~l~~~l~~~~ 343 (817)
||||++++|+|+.||++|.|||+|+...+|.++|++|+++++||+++|..|.....+|.+|++...+.|..+++.+...+
T Consensus 228 INhtllt~eaL~~rGi~v~gii~~~~~~~N~~~l~~~~~~~~pv~~lp~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (817)
T PLN02974 228 ISATLAAYESLLLRGYDVVAVVIEDHGLSNEKALLSYLSNRVPVFVLPPVPEDPGDDLDEWFDDSKSTFDALLDALQSWH 307 (817)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeCCccchHHHHHHHHhcCCcEEeCCCCCCCcchhHHHHHHhcchhHHHHHHHHHHHH
Confidence 99999999999999999999999988889999999998779999999999988878899999999899999999999999
Q ss_pred HHHHHhhccchhhhcCcccccCCCCCCCCCCCeEEEEeecCc--eeEEEeCccCccccceeeccccccccCCC-CCCCHH
Q 003472 344 SERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGE--NFSVYQDQKNKFIGQQFDACASWWTQGPD-ATLQIE 420 (817)
Q Consensus 344 ~~r~~~~~~~~~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~--~~~l~D~dG~~~~~~ylD~~sg~~~~~LG-h~~hP~ 420 (817)
.+|+++++.|.+++++++||||++++.+..+.|.+|++++|. -+|++|.+|++..++|||++||||++++| |+ ||+
T Consensus 308 ~~r~~~~~~~~~~a~~~iw~Pftq~~~~~~~~~~vi~~a~G~~~~~~~~d~~G~~~~~~ylD~~sg~w~~~lG~h~-~p~ 386 (817)
T PLN02974 308 SGRLQRLQSMPKEAGEVLWWPFTQHALVPRDSVTVIDSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTL-QPE 386 (817)
T ss_pred HHHhHHHHHHHHHHhhhccCCcccccccCCCCceEEEeeecCceeEEEECCCCCcccceEEEcchhHHHhCCCcCC-CHH
Confidence 999999999999999999999999988765678999999996 12589999843345899999999999999 68 999
Q ss_pred HHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCc
Q 003472 421 LARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDT 500 (817)
Q Consensus 421 V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~ 500 (817)
|++|+++|++++.|+++..++|+++.+||++|++.++.+++++|||++|||||||+|||||+|+|+.++|+..+..+.-.
T Consensus 387 I~~Ai~~Qa~rl~hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~ 466 (817)
T PLN02974 387 LARAVAYAAGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKR 466 (817)
T ss_pred HHHHHHHHHhhCCccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 99999999999999887778899999999999997664557899999999999999999996668766553000000000
Q ss_pred cccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccc
Q 003472 501 TEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF 580 (817)
Q Consensus 501 ~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~ 580 (817)
....+|.+||+++++|||+|+++|++++.+.|+..++.+|+.+++.++++|..+++++.++++.|+.+++.... .+.+|
T Consensus 467 ~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~-~~~~~ 545 (817)
T PLN02974 467 GGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEG-EETTW 545 (817)
T ss_pred cccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCccccccccc-ccccc
Confidence 00015889999999999999999999998878776446888888888888887777888888888665321000 01123
Q ss_pred cCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEe
Q 003472 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFD 660 (817)
Q Consensus 581 ~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~D 660 (817)
.+.++.|+..++.+++...|++.+++.|++....+++++|||||+|||+||+||+++||++|+++||++|++||++||+|
T Consensus 546 ~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~D 625 (817)
T PLN02974 546 ESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFD 625 (817)
T ss_pred ccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Confidence 33334444334456677778889999887432113467899999999669999999999999999999999999999999
Q ss_pred eeeeccccccccchhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHH
Q 003472 661 EVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSI 740 (817)
Q Consensus 661 EV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L 740 (817)
||+|||||||++|+++++||+|||+|+||+|||||+|+||+++++++++.|....+...+.|++||+|||++||||+++|
T Consensus 626 EV~TGfGRtG~~fa~e~~gv~PDIi~~gKgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L 705 (817)
T PLN02974 626 EVFTGLWRLGVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKAL 705 (817)
T ss_pred ecccCCCcccchhhHHhcCCCCCEEeecccccCCCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999964333346789999999999999999999
Q ss_pred HHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCc--chHHHHHHHHH-HcCCC
Q 003472 741 KWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY--CLIELFLYNFL-TTGMH 816 (817)
Q Consensus 741 ~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~--~~~~~~~~~~l-~~Gv~ 816 (817)
++++++++.+++.++++.++++|.+.+.+.+++||.|++|||+|+|++|||+++.....| .....+...++ ++|++
T Consensus 706 ~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~ 784 (817)
T PLN02974 706 QWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIY 784 (817)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEE
Confidence 999999899999999999999999888777788999999999999999999876432233 34567788888 89985
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-85 Score=726.08 Aligned_cols=398 Identities=29% Similarity=0.426 Sum_probs=344.4
Q ss_pred hcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC
Q 003472 357 AGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM 436 (817)
Q Consensus 357 ~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~ 436 (817)
+.+++||||++++..... |.+|++++|. |+||.||| +|||.+|||||+++||+ ||+|.+|+++|++++.|++
T Consensus 9 d~~~~whP~t~~~~~~~~-~~~i~~aeG~--yl~d~~G~----r~lDg~sg~W~~~~Gh~-~~~i~~Ai~~Q~~~l~~~~ 80 (449)
T COG0161 9 DLSHLWHPFTQMRDPLAE-PRVIVRAEGV--YLTDIDGR----RYLDGMSGLWCVNHGHG-RPEIAEAIKKQLDKLPHVM 80 (449)
T ss_pred hhhheecccccccccccc-ceeeeeccee--EEEeCCCC----EEEecccHHHHhhcCcC-CHHHHHHHHHHHHhCCchh
Confidence 889999999999876444 8899998885 69999999 99999999999999999 9999999999999999998
Q ss_pred CCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCc
Q 003472 437 FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSY 516 (817)
Q Consensus 437 ~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsy 516 (817)
+..++++++++||++|++++|++.+++|||++|||||||+||||| ++|+..+|+ ++|++||+++++|
T Consensus 81 ~~~~t~~Pa~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma-~qY~~~~G~------------p~r~~~Isr~~gY 147 (449)
T COG0161 81 FGGFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMA-LQYWRARGQ------------PQRKKFISRRNGY 147 (449)
T ss_pred hcccCCchHHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHH-HHHHHhcCC------------CcceEEEEeccCc
Confidence 778889999999999999999544899999999999999999999 788887776 7799999999999
Q ss_pred cCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhH
Q 003472 517 HGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDL 596 (817)
Q Consensus 517 HG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~ 596 (817)
||.|+++||++|....+.. +|. ++ ..++.+++.|+.|+.. +++ ...++.
T Consensus 148 HG~T~ga~Sv~g~~~~~~~----~~~-------~l----l~~~~~~~~P~~y~~~--------~~~--------~~~~~~ 196 (449)
T COG0161 148 HGDTLGAMSVGGPVALRHA----FYD-------PL----LPEVLHLPAPYAYRRG--------FFG--------EGDEEF 196 (449)
T ss_pred CcccchheeccCchhhhhh----hcc-------cc----ccCceecCCCcccccC--------CCC--------CChHHH
Confidence 9999999999996544422 111 11 2345678888776421 111 111222
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhh
Q 003472 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676 (817)
Q Consensus 597 ~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e 676 (817)
..+++.||+.+++ .++++|||||+|||+|++||+++||++||+++|++|++||||||+|||.|||||||++|+++
T Consensus 197 -~~~a~~le~~i~~----~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e 271 (449)
T COG0161 197 -AEAADELEALILE----HGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACE 271 (449)
T ss_pred -HHHHHHHHHHHHh----cCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhh
Confidence 3567889999886 56799999999999777799999999999999999999999999999999999999999999
Q ss_pred hcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHH
Q 003472 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (817)
Q Consensus 677 ~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~ 756 (817)
++||+|||+|+||||+|||+||||++++++|++.|.... ...|.||+||+|||++||||+|+|+++++ +++.+++
T Consensus 272 ~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~-~~~f~HG~TYsghPlacAaAla~L~i~e~----e~l~~~~ 346 (449)
T COG0161 272 HAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGD-AGAFMHGHTYSGNPLACAAALANLDILEE----EDLLERV 346 (449)
T ss_pred hcCCCCCeeeecccccccchhhHhHhhhHHHHHHHhccc-CCeeccCCccccCHHHHHHHHHHHHHHHh----cCHHHHH
Confidence 999999999999999999999999999999999998764 57899999999999999999999999999 5666667
Q ss_pred HHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCC---cchHHHHHHHHHHcCCC
Q 003472 757 RILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG---YCLIELFLYNFLTTGMH 816 (817)
Q Consensus 757 ~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~---~~~~~~~~~~~l~~Gv~ 816 (817)
+.++.+|.++|.+.+.++|.|+||||.|+|.+|||+.++.... .+....+...++++|++
T Consensus 347 ~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~ 409 (449)
T COG0161 347 AEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLL 409 (449)
T ss_pred HHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeE
Confidence 7777778878777788889999999999999999999864443 35677888888999985
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-79 Score=681.22 Aligned_cols=370 Identities=25% Similarity=0.341 Sum_probs=322.6
Q ss_pred CCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHH
Q 003472 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (817)
Q Consensus 374 ~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (817)
..|+++++++|. |+||+||| +||||.+|+++.++||| ||+|++|+++|++++.|.......+++..+++|+|.
T Consensus 37 ~~p~~~~ra~G~--~l~DvdG~----~ylDf~sgi~v~~~GH~-hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~ 109 (447)
T COG0160 37 RFPLVIVRAEGA--YLYDVDGN----EYLDFLSGIAVLNLGHN-HPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLT 109 (447)
T ss_pred cCcceEEecccC--EEEeCCCC----EEEEcccCcchhccCCC-CHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHH
Confidence 357899999886 59999999 99999999999999999 999999999999999987655555699999999999
Q ss_pred hhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCC
Q 003472 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (817)
Q Consensus 454 ~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~ 533 (817)
+.+|...+++++|+||||||||+|||+| |.||++ ..||+|.++|||+|.++|++|+....+
T Consensus 110 ~~~p~~~~~~~~f~~sGaeA~E~AiKiA-r~~Tgr------------------~~viaf~~afHG~T~galslT~~~~~~ 170 (447)
T COG0160 110 ALAPGSGLKKVFFGNSGAEAVEAAIKIA-RAYTGR------------------PGVIAFDGAFHGRTLGALSLTGSKPPY 170 (447)
T ss_pred HhCCcccCCeEEecCCcHHHHHHHHHHH-HHHhCC------------------CcEEEECCcccccchhhHHhccCcccc
Confidence 9988633789999999999999999999 899875 479999999999999999999865433
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
.. ++++ +.++++++|+|++|++... - +.+++...+.+++++.+....
T Consensus 171 ~~-------~~~~--------~~~~v~~~Pyp~~yr~p~~--------~---------~~~~~~~~~~~~~e~~i~~~~- 217 (447)
T COG0160 171 KA-------GFGP--------LPPGVYHVPYPNPYRCPFG--------I---------GGEECGDDALEYIERALFDLE- 217 (447)
T ss_pred cc-------CCCC--------CCCCeEEecCCccccCccc--------C---------chhhhhHHHHHHHHHHHHhhc-
Confidence 21 1222 1245789999999976421 0 113455556677888666532
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
.+++++||||+||| ||+||+++||++||++||++|++||++||+|||||||||||+||++||+||+|||+|+||+|||
T Consensus 218 -~~~~~vAaiI~EpI-QgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~aK~ig~ 295 (447)
T COG0160 218 -VGPEEVAAIIIEPI-QGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSLGG 295 (447)
T ss_pred -CCCCceeEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEecccccC
Confidence 56789999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +|+|+|+++++++++..+ .|++||+|||++||||+|+|++|++ ++|.++++.+|++|+++|.++.++
T Consensus 296 G-~Pl~avv~r~ei~~~~~g-------~~~~Tf~GNpva~Aaa~AvL~vie~----e~L~~~a~~~G~~l~~~L~~l~~~ 363 (447)
T COG0160 296 G-LPLSAVVGRAEIMDWPPG-------GHGGTFGGNPVACAAALAVLDVIEE----ENLLERAAELGEYLRDRLEELQEK 363 (447)
T ss_pred C-CceeEEeccHHhcccCCc-------ccCCCCCcCHHHHHHHHHHHHHHHH----ccHHHHHHHHHHHHHHHHHHHHhh
Confidence 9 899999999999994432 5999999999999999999999998 688888889999999999999999
Q ss_pred CCCcceEEeeeeEEEEEEecCCCC--CCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCN--AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~--~~~~~~~~~~~~~l~~Gv~ 816 (817)
||.|+||||+|||+||||+++... .+.+....+++.|+++|++
T Consensus 364 ~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Gli 408 (447)
T COG0160 364 HPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLL 408 (447)
T ss_pred cCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCE
Confidence 999999999999999999987433 4558999999999999985
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-79 Score=663.26 Aligned_cols=340 Identities=27% Similarity=0.353 Sum_probs=300.6
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.+|+ +||||.+|+++++|||+ ||.|++|+++|++++.|.+ +.+.+++..+|+++|++
T Consensus 24 ~~~~~~~G~G~--~v~D~~G~----~YlDf~~Giav~~lGH~-hP~iv~al~~Q~~kl~h~s-n~~~~~~~~~la~~L~~ 95 (404)
T COG4992 24 LPVVIVRGEGA--YVWDQQGR----EYLDFAAGIAVNNLGHC-HPALVEALKEQAEKLWHVS-NLFYNEPQAELAEKLVE 95 (404)
T ss_pred CceeEEecccc--EEECCCCC----EeeeeccceeeeccCCC-CHHHHHHHHHHHHHhhhcc-cccCChHHHHHHHHHHh
Confidence 35688887775 69999999 99999999999999999 9999999999999999987 35789999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
..| ++++|||||||+||||+|||+| |+|++. ++|.+||+|.++|||+|++++|+|+.+.|++
T Consensus 96 ~s~--~~d~vff~NSGaEA~EaAiKlA-Rk~~~~---------------~~k~~Iia~~nsFHGRT~galS~t~~~ky~~ 157 (404)
T COG4992 96 LSP--FADRVFFCNSGAEANEAALKLA-RKYTGD---------------PEKSKIIAFENSFHGRTLGALSATGQPKYRK 157 (404)
T ss_pred hCc--cccEEEEcCCcHHHHHHHHHHH-HHHcCC---------------CCCcEEEEEcCCcCCccceeeeccCChhhcc
Confidence 987 2789999999999999999999 788761 5678999999999999999999999988887
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
+|. |. .+++.+ ++|||+ +.++++++
T Consensus 158 ~F~-Pl---------------~~g~~~----------------vpfnDi------------------~al~~ai~----- 182 (404)
T COG4992 158 GFG-PL---------------LPGFRH----------------VPFNDI------------------EALEAAID----- 182 (404)
T ss_pred CCC-CC---------------CCCcee----------------cCCCCH------------------HHHHHHhc-----
Confidence 521 11 123333 348886 56777775
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
+++||||+||| ||+||+++||++||+++|+||++||+|||+||||||+||||++|++||+||+|||+|++|+||||
T Consensus 183 ---~~taAvivEPI-QGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~tlaK~LgGG 258 (404)
T COG4992 183 ---EDTAAVIVEPI-QGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILTLAKALGGG 258 (404)
T ss_pred ---cCeEEEEEecc-cCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEEEeeccccCC
Confidence 38999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+||+++++.+.+.+.. ..||+||+|||++||++.|+|+++.+ +++.+++++++++|+++|.++..++
T Consensus 259 -~PigA~la~~~~~~~~~~------G~HgSTfGGNpLacAv~~a~l~~l~~----e~ll~~v~~~g~~~~~~L~~l~~~~ 327 (404)
T COG4992 259 -FPIGAMLATEEIASAFTP------GDHGSTFGGNPLACAVALAVLEVLLE----EGLLENVREKGEYLLQRLRELKRRY 327 (404)
T ss_pred -ccceeeEEchhhhhcCCC------CcccCCCCcCHHHHHHHHHHHHHHcc----hhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 899999999777777743 36999999999999999999999999 4556666777778888888888999
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
|.|.+|||+|||+|++|..+. ....++..+.++|++
T Consensus 328 ~~v~~vRG~GLmiGiel~~~~------~a~~~~~~~~~~gvL 363 (404)
T COG4992 328 PLVKEVRGRGLMIGIELKEPY------RARDIVRALREEGVL 363 (404)
T ss_pred CceeeeecceeEEEEEecCcc------cHHHHHHHHHHCCeE
Confidence 999999999999999998862 567899999999975
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-75 Score=621.95 Aligned_cols=368 Identities=22% Similarity=0.282 Sum_probs=321.1
Q ss_pred CCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHH
Q 003472 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (817)
Q Consensus 374 ~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (817)
..|++|.+++|. |+||.+|+ +|||+.+|++++++||| ||+|++|+.+|+.++.|.+ ..+.+++..+||++|+
T Consensus 31 ~~Pl~Iv~~~~~--ylyDe~G~----ryLD~f~Gi~tvslGHc-hP~v~~a~~kQl~~l~H~t-~~~~~~pi~~~Ae~L~ 102 (442)
T KOG1404|consen 31 KKPLVIVRGEGQ--YLYDEEGR----RYLDAFGGIVTVSLGHC-HPDVVAAAVKQLKKLYHTT-SGYLNPPIHDLAEALV 102 (442)
T ss_pred cCCceEEecceE--EEEcCCCc----eeehhhCCeEEEEcCCC-ChHHHHHHHHhhhhhEEee-ccccCCcHHHHHHHHH
Confidence 458899988885 59999999 99999999999999999 9999999999999888865 4678999999999999
Q ss_pred hhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCC
Q 003472 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (817)
Q Consensus 454 ~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~ 533 (817)
+.+|.+ +.+++|+||||||||.||||| |.||+. .+||+++++|||.|..++++|+.+.++
T Consensus 103 s~~P~~-l~~vfF~nsGsEANelal~ma-r~Yt~~------------------~diIa~r~~YHG~t~~t~glt~~~~~k 162 (442)
T KOG1404|consen 103 SKLPGD-LKVVFFVNSGSEANELALKMA-RLYTGN------------------LDIIARRNSYHGNTLYTLGLTGLSPWK 162 (442)
T ss_pred HhCCCC-ceEEEEecCCchHHHHHHHHH-HHhcCC------------------ceEEEeeccccCCchhhcccccCCccc
Confidence 999866 789999999999999999999 899865 499999999999999999999987666
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
..+ | ....++++..-|++++.. |.+ +. .++..+.|.+.++..+..
T Consensus 163 ~~~--------------~--~~~~~~~~~~~Pdp~r~~--------~~~-------~~-~~e~~d~~a~~l~d~i~~--- 207 (442)
T KOG1404|consen 163 QNF--------------P--GVASGVHHTMNPDPYRGI--------FGG-------SN-EEEASDRYAKELEDLILY--- 207 (442)
T ss_pred ccC--------------C--CCCCcccccCCCCccccc--------CCC-------Cc-hhhhHHHHHHHHHHHHHh---
Confidence 531 0 011356677778777642 222 11 234445566777777764
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
..++.|||+|+||| ||.||++.+|++||++++++|+++|+++|+|||||||||||.+|++|++||.|||+|++|+|||
T Consensus 208 -~~~~~vAafiaEtI-qGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGn 285 (442)
T KOG1404|consen 208 -DGPETVAAFIAETI-QGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGN 285 (442)
T ss_pred -cCCCceeEEEeehh-ccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCCCccHHHHHhhccC
Confidence 56788999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +|||||+++++|++.+.... .|.+||+|||++||+++|+|+++++ ++++++++.+|.+|+++|.++.++
T Consensus 286 G-~Pl~AVvtt~EIa~v~~~~~-----~~fnTyggnP~a~avg~aVL~Vike----e~LqE~aa~vG~yl~~~l~~l~d~ 355 (442)
T KOG1404|consen 286 G-FPLGAVVTTPEIADVLNQKS-----SHFNTYGGNPVACAVGLAVLKVIKE----ENLQENAAEVGSYLLEKLAALKDK 355 (442)
T ss_pred C-CcceeeecCHHHHHHHHhcc-----ccccccCCCchhHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9 99999999999999997542 3889999999999999999999999 899999999999999999999999
Q ss_pred CCCcceEEeeeeEEEEEEecCCCCCC---cchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCNAG---YCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~~~---~~~~~~~~~~~l~~Gv~ 816 (817)
||+|+||||+|||+|+|+++++.+.. +.....+-.+|.+.||+
T Consensus 356 h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvl 401 (442)
T KOG1404|consen 356 HPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGVL 401 (442)
T ss_pred CCceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCee
Confidence 99999999999999999999862222 36777888999999986
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-74 Score=662.01 Aligned_cols=405 Identities=20% Similarity=0.245 Sum_probs=328.2
Q ss_pred hccchhhhcCcccccCCCCCCCCC--CCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHH
Q 003472 350 LCDMPKRAGELFWWPFTQHKLVPE--EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGY 427 (817)
Q Consensus 350 ~~~~~~~~~~~l~~p~~~~~~~~~--~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~ 427 (817)
++++.+++.+++|+|++++..+.. ..|+++++++|. ++||.||| +||||++|+|++++||+ ||+|++|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~sg~~~~~lGh~-~p~v~~Av~~ 77 (461)
T PRK07482 5 IDELLAWDRDHFFHPSTHLGDHARGELPGRIVEGGEGI--RITDAQGR----RYIDAFAGLYCVNVGYG-RTEVAEAIAE 77 (461)
T ss_pred HHHHHHhhhhhccCCcccccccccccCCCeeEEeeeee--EEEECCCC----EEEEcccchhhhcCCCC-CHHHHHHHHH
Confidence 334455567789999987654321 247899998886 59999999 99999999999999999 9999999999
Q ss_pred HHHhccccCC-CCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccc
Q 003472 428 TAARFGHVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIE 506 (817)
Q Consensus 428 q~~~~~~~~~-~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r 506 (817)
|++++.+... ..+.+++..+||++|++.+|.+ +++|+|+||||||||+|||+| |+|+..+|. ++|
T Consensus 78 q~~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGSEAve~AlKlA-r~~~~~~g~------------~~r 143 (461)
T PRK07482 78 QAKELAYYHTYVGHGTEASITLSKRIIDRAPAG-MSKVYYGLSGSDANETQIKLV-WYYNNVLGR------------PEK 143 (461)
T ss_pred HHHhcCccccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCchHHHHHHHHHHH-HHHHHhcCC------------CCC
Confidence 9999875432 3467999999999999988754 689999999999999999999 788755443 568
Q ss_pred eEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchh
Q 003472 507 LKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEI 586 (817)
Q Consensus 507 ~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~ 586 (817)
++||+|+++|||+|.+++++++.+.++.. +++ + ..++.+++.|+++++.. .+
T Consensus 144 ~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~--------~~~----~----~~~~~~~~~p~~~~~~~-------~~----- 195 (461)
T PRK07482 144 KKIISRWRGYHGSGVVTGSLTGLSLFHQH--------FDL----P----IARVLHTEAPHYYRRAD-------AG----- 195 (461)
T ss_pred ceEEEecCccCCccHhhhhccCCchhhhc--------cCC----C----CCCCEEcCCCccccccc-------cC-----
Confidence 99999999999999999999987655542 111 1 12345566665543210 00
Q ss_pred hhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecc
Q 003472 587 FYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGF 666 (817)
Q Consensus 587 ~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGf 666 (817)
...+.+...+++.+++.+++ .++++|||||+||| ||+||+++||++|+++||++|++||+|||+|||||||
T Consensus 196 ----~~~~~~~~~~~~~l~~~~~~----~~~~~iAAvi~EPv-qg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGf 266 (461)
T PRK07482 196 ----MSEEQFSAYCADELEELILA----EGPDTIAAFIAEPV-LGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGF 266 (461)
T ss_pred ----CCHHHHHHHHHHHHHHHHHh----cCCCcEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCC
Confidence 01123334567788888863 34678999999998 9999999999999999999999999999999999999
Q ss_pred ccccccchhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCC-ccceeecccCCCCCHHHHHHHHHHHHHhcC
Q 003472 667 WRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKD 745 (817)
Q Consensus 667 GRtG~~~a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~-~~~~~~h~~T~~gnPla~AAAlA~L~~l~~ 745 (817)
||||++|+++++||+|||+|+||+|||||+|+||+++++++++.+.... +...+.|++||+|||++||||+|+|+++++
T Consensus 267 GRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~ 346 (461)
T PRK07482 267 GRLGSMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILER 346 (461)
T ss_pred CcCcchhhHHhcCCCCCEEEEccccccCccccceeeecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999889999999999999885321 123457999999999999999999999998
Q ss_pred cCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCC-c----chHHHHHHHHHHcCCC
Q 003472 746 PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG-Y----CLIELFLYNFLTTGMH 816 (817)
Q Consensus 746 ~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~-~----~~~~~~~~~~l~~Gv~ 816 (817)
+++.++++.++++|.++|.+++++||.|++|||.|+|++|||+++..... + .....+...++++||+
T Consensus 347 ----~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl 418 (461)
T PRK07482 347 ----ENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVI 418 (461)
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcE
Confidence 45566667777777778888888999999999999999999986532111 1 2356788999999985
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-74 Score=654.99 Aligned_cols=401 Identities=23% Similarity=0.322 Sum_probs=329.4
Q ss_pred hhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccc
Q 003472 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (817)
Q Consensus 355 ~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~ 434 (817)
+.+.+++||||+++..+....|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+
T Consensus 4 ~~~~~~~w~p~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~ 76 (449)
T PRK07481 4 SNNARRFWHPMAHPAEMKARPPIIIVRGDGV--YVYDIDGK----KLLDGVGGLWNVNVGHN-REEVKEAIVRQLDELEY 76 (449)
T ss_pred ccccccccCCcccccccccCCCceEEecccc--EEEeCCCC----EEEECchhHHhhcCCCC-CHHHHHHHHHHHHhccc
Confidence 3557889999999987654468899998886 59999999 99999999999999999 99999999999999877
Q ss_pred cCC-CCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEc
Q 003472 435 VMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (817)
Q Consensus 435 ~~~-~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~ 513 (817)
... ....+++..+||++|++.+|.+.+++|+|++|||||||+|||+| |+|++.+|. ++|++||+|+
T Consensus 77 ~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklA-r~~~~~~g~------------~~r~~ii~~~ 143 (449)
T PRK07481 77 YSTFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLA-RQYWKVRGQ------------PERTKFISLK 143 (449)
T ss_pred eecccccCCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEEC
Confidence 543 24679999999999999885333789999999999999999999 888865543 5688999999
Q ss_pred CCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCc
Q 003472 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (817)
Q Consensus 514 gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~ 593 (817)
++|||+|.+++++++...++.. | ++ ..+++.+++.|+.+++ +||.. |.
T Consensus 144 ~~yHG~t~ga~s~~~~~~~~~~-----~---~~--------~~~g~~~~~~~~~~~~--------~~~~~--------d~ 191 (449)
T PRK07481 144 QGYHGTHFGGASVNGNTVFRRN-----Y---EP--------LLPGCFHVETPWLYRN--------PFTEQ--------DP 191 (449)
T ss_pred CCcCCcchhhhccCCCcccccc-----c---CC--------CCCCCEEeCCCccccc--------ccCCC--------CH
Confidence 9999999999999986654432 1 11 1134556666655432 24410 12
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc
Q 003472 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (817)
Q Consensus 594 ~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~ 673 (817)
+.+...+.+.+|+.|+. .++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||++|
T Consensus 192 ~~~~~~~~~~le~~i~~----~~~~~iAAviiEPv-qg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~ 266 (449)
T PRK07481 192 EELARICARLLEREIAF----QGPDTIAAFIAEPV-QGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWF 266 (449)
T ss_pred HHHHHHHHHHHHHHHHh----cCCCcEEEEEEecc-cCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhh
Confidence 24445566778887763 34678999999998 99999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCc-cceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcH
Q 003472 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (817)
Q Consensus 674 a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~-~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l 752 (817)
+++++||+|||+|+||+|||||+|+||+++++++++.+..... ...+.|++||+|||++||||+++|+++++ +++
T Consensus 267 a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~----~~l 342 (449)
T PRK07481 267 GSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVR----EDL 342 (449)
T ss_pred HhhhcCCCCCEEEEeecccCCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHh----hhH
Confidence 9999999999999999999999999999999999998854311 12457999999999999999999999998 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCC-----cchHHHHHHHHHHcCCC
Q 003472 753 IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG-----YCLIELFLYNFLTTGMH 816 (817)
Q Consensus 753 ~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~-----~~~~~~~~~~~l~~Gv~ 816 (817)
.++++.++++|.+++.++.+++|.|++|||+|+|++|+|+++..... ......+...|+++||+
T Consensus 343 ~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl 411 (449)
T PRK07481 343 PANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVL 411 (449)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeE
Confidence 66667777777778777777899999999999999999976421111 23456788899999985
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-73 Score=654.06 Aligned_cols=399 Identities=20% Similarity=0.249 Sum_probs=321.6
Q ss_pred hhhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003472 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (817)
Q Consensus 354 ~~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~ 433 (817)
.+++.++.|+|++++.......|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~~ 79 (459)
T PRK05965 7 IELDRAHLIHPVASYRGHEARGVTVLASAKGA--TLTDASGH----QLLDAFAGLWCVNVGYG-QESIVEAAAEQMRELP 79 (459)
T ss_pred HHhhhhccccccccccccccCCCceEEeeeEe--EEEECCCC----EEEECcccHHhccCCCC-CHHHHHHHHHHHHhcC
Confidence 33455678999876532211247899998886 59999999 99999999999999999 9999999999999987
Q ss_pred ccCC-CCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEE
Q 003472 434 HVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (817)
Q Consensus 434 ~~~~-~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~ 512 (817)
+... ..+.+++..+||++|++.+|.+ +++|+|++|||||||+|||+| |+|+..+|. ++|.+||++
T Consensus 80 ~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGSEAve~AlKlA-r~~~~~~g~------------~~r~kii~~ 145 (459)
T PRK05965 80 YATGYFHFGSEPAIRLAAKLAERAPGS-LNHVYFTLGGSDAVDSAVRFI-RHYWNATGR------------PSKKQFISL 145 (459)
T ss_pred CcccccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCChhHHHHHHHHHH-HHHHHhcCC------------CCccEEEEe
Confidence 7543 2457899999999999998754 789999999999999999999 888765553 568899999
Q ss_pred cCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccC
Q 003472 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (817)
Q Consensus 513 ~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~ 592 (817)
+++|||+|.+++++|+.+.++.+ +++.. +++.+++.|+++++. ++ .+
T Consensus 146 ~~~YHG~t~~a~s~t~~~~~~~~--------~~~~~--------~~~~~~~~~~~~~~~--------~~---------~~ 192 (459)
T PRK05965 146 ERGYHGSSSVGAGLTALPAFHRG--------FDLPL--------PWQHKIPSPYPYRNP--------VG---------DD 192 (459)
T ss_pred cCCcCcccHHHHHhcCCchhhcc--------cCCCC--------CCCEEcCCCcccccc--------cC---------CC
Confidence 99999999999999986655442 12111 123445555544321 11 11
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc
Q 003472 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (817)
Q Consensus 593 ~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~ 672 (817)
.+++...+++.+++.|++ .++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||++
T Consensus 193 ~~~~~~~~~~~l~~~i~~----~~~~~iAAvIvEPi-qg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~ 267 (459)
T PRK05965 193 PQAIIAASVAALRAKVAE----LGADNVAAFFCEPI-QGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPL 267 (459)
T ss_pred hHHHHHHHHHHHHHHHHh----cCCCceEEEEEecc-ccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchh
Confidence 123445567788888874 34578999999997 9999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCc-cceeecccCCCCCHHHHHHHHHHHHHhcCcCchhc
Q 003472 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN 751 (817)
Q Consensus 673 ~a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~-~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~ 751 (817)
|+++++||+|||+|+||+|||||+|+||+++++++++.+..... ...+.|++||+|||++||||+|+|+++++ ++
T Consensus 268 ~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~----~~ 343 (459)
T PRK05965 268 FACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHE----GG 343 (459)
T ss_pred hhHhhcCCCCCeEEechhhccCCcceeEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHh----cc
Confidence 99999999999999999999999999999999999998854211 12357999999999999999999999998 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCc-----chHHHHHHHHHHcCCC
Q 003472 752 IIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY-----CLIELFLYNFLTTGMH 816 (817)
Q Consensus 752 l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~-----~~~~~~~~~~l~~Gv~ 816 (817)
+.++++.++++|.+++.++ .++|.|++|||+|+|++|||+++.....+ .....+...++++||+
T Consensus 344 l~~~~~~~g~~l~~~l~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll 412 (459)
T PRK05965 344 LLANGQKAGPRFAAGLDAL-RAHPLVGDVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGLV 412 (459)
T ss_pred HHHHHHHHHHHHHHHHHhh-ccCCCEEEEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeE
Confidence 5556667777777776665 46999999999999999999865322211 3467788999999985
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-72 Score=642.54 Aligned_cols=398 Identities=25% Similarity=0.407 Sum_probs=321.5
Q ss_pred hhhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003472 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (817)
Q Consensus 354 ~~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~ 433 (817)
.++...++|+|++++.......|+++++++|. ++||.||| +||||++|+|+.++||+ ||+|++|+++|++++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~ 87 (453)
T PRK06943 15 VARSLRAVWHPCTQMKHHERLPLLPVARGEGA--WLYDRDGR----RYLDAISSWWVNLFGHA-NPRINAALKDQLDTLE 87 (453)
T ss_pred HHHhhcccccCCcCccccccCCCceEEecccC--EEEeCCCC----EEEEcchHHHHhcCCCC-CHHHHHHHHHHHHhcC
Confidence 34456778999887643322357899998886 59999999 99999999999999999 9999999999999988
Q ss_pred ccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEc
Q 003472 434 HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (817)
Q Consensus 434 ~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~ 513 (817)
+.......+++..+||++|++.+|.. +++|+|+||||||||+|||+| |+|+..+|. ++|.+||+|+
T Consensus 88 ~~~~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGseAve~AlKlA-~~~~~~rg~------------~~r~~Ii~~~ 153 (453)
T PRK06943 88 HAMLAGCTHEPAIELAERLAALTGGT-LGHAFFASDGASAVEIALKMS-FHAWRNRGR------------GDKREFVCLA 153 (453)
T ss_pred CccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCCHHHHHHHHHHH-HHHHHHhCC------------CCCCEEEEEC
Confidence 76655678999999999999988753 579999999999999999999 666644443 5688999999
Q ss_pred CCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCc
Q 003472 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (817)
Q Consensus 514 gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~ 593 (817)
++|||+|.+++++++...++..+ .+.+ .++.+++.|+.++.. +. ...
T Consensus 154 ~~yHG~t~gals~~~~~~~~~~~--------~~~~--------~~~~~~~~p~~~~~~--------~~---------~~~ 200 (453)
T PRK06943 154 NGYHGETIGALGVTDVALFKDAY--------DPLI--------RHAHVVASPDARGAR--------PG---------ETA 200 (453)
T ss_pred CCcCCCcHHhhcccCChhhhccc--------ccCC--------CCCEEECCCCccccc--------cC---------CCH
Confidence 99999999999999876665531 1111 223445556443211 00 001
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc
Q 003472 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (817)
Q Consensus 594 ~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~ 673 (817)
.++...+++.+++.|++ ++++|||||+||++||+||+++||++||++||++|++||++||+|||||||||||+||
T Consensus 201 ~~~~~~~~~~l~~~l~~-----~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~f 275 (453)
T PRK06943 201 ADVAARALADVRRLFAE-----RAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFF 275 (453)
T ss_pred HHHHHHHHHHHHHHHHh-----CCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchh
Confidence 22333456778888863 4679999999994499999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHH
Q 003472 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (817)
Q Consensus 674 a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~ 753 (817)
+++++||+|||+|+||+|||||+|+||+++++++++.+........+.|++||+|||++||||+|+|++++++ ++.
T Consensus 276 a~~~~gv~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~----~l~ 351 (453)
T PRK06943 276 ACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAED----DVL 351 (453)
T ss_pred HHHhCCCCCCeEeeehhhccCcccceEEEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhc----CHH
Confidence 9999999999999999999999999999999999998854221234579999999999999999999999984 455
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 754 PERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 754 ~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++++.++++|.++|.++ .++|.|.+|||+|+|++|||+.+. +.+......+...++++||+
T Consensus 352 ~~~~~~G~~l~~~L~~l-~~~~~v~~vrG~Gl~~gvel~~~~-~~~~~~~~~i~~~~~~~Gll 412 (453)
T PRK06943 352 ARNARKSARLRAALAPL-AAHPQVRHLRQRGTIFAFDVALDG-DAARTFSRRFFEAALERELL 412 (453)
T ss_pred HHHHHHHHHHHHHHHHH-hcCCCEEeEeccccEEEEEEccCC-CcchHHHHHHHHHHHHCCcE
Confidence 56666777777776665 568999999999999999998543 22234567888999999985
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-72 Score=643.81 Aligned_cols=401 Identities=29% Similarity=0.450 Sum_probs=322.2
Q ss_pred chhhhcCcccccCCCCCCCCCC-CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHh
Q 003472 353 MPKRAGELFWWPFTQHKLVPEE-AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (817)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~-~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~ 431 (817)
+.+.+..++|+|++++...... +|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~ 95 (472)
T PRK08742 23 WRQRDLAVLWHPCTQMREHPHTLPLVPIARGEGA--WLVGHDGR----RYLDAVSSWWTNLFGHA-EPRIGAAIAAQAGE 95 (472)
T ss_pred HHHhhhcccccCCcccccccccCCCeeEEecccC--EEEeCCCC----EEEEcCccHHhccCCCC-CHHHHHHHHHHHHh
Confidence 3445567789999886532211 34678888775 59999999 99999999999999999 99999999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHhhcCC----CCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccce
Q 003472 432 FGHVMFPENVYEPALECAELLLQGVGK----GWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIEL 507 (817)
Q Consensus 432 ~~~~~~~~~~~~~~~eLae~L~~~~~~----~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~ 507 (817)
+.+.....+.+++..+|+++|++.+|. +++++|+|++|||||||+|||+| |+|+..+|. ++|.
T Consensus 96 l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlA-r~~~~~~g~------------~~r~ 162 (472)
T PRK08742 96 LEQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMA-FHYFHNRGE------------HRRT 162 (472)
T ss_pred CCCccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHH-HHHHHhcCC------------CCCc
Confidence 877654457799999999999998764 23679999999999999999999 788765543 5688
Q ss_pred EEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhh
Q 003472 508 KVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587 (817)
Q Consensus 508 ~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~ 587 (817)
+||+|+++|||+|.+++++++.+.++.. | .++ .+++.+++.|+.+++.. ..
T Consensus 163 ~ii~~~~syHG~t~gals~~~~~~~~~~-----~---~p~--------~~~~~~~~~p~~~~~~~--------~~----- 213 (472)
T PRK08742 163 RFIALENGYHGETIGALAVGDIPLYRRV-----Y---APL--------LLESLFAPSPDAYLAEP--------GQ----- 213 (472)
T ss_pred EEEEECCCcCCCchhhhhccCCcccccc-----c---CCC--------CCCCEEeCCCCcccccc--------CC-----
Confidence 9999999999999999999987655542 1 111 12345666666553211 10
Q ss_pred hhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccc
Q 003472 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667 (817)
Q Consensus 588 ~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfG 667 (817)
..++....+.+.+++.++. .+++|||||+||++||+||+++||++||++||++|++||++||+||||||||
T Consensus 214 ----~~~~~~~~~~~~l~~~~~~-----~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfG 284 (472)
T PRK08742 214 ----SAEDYALQAADALQALFEQ-----SPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFG 284 (472)
T ss_pred ----CHHHHHHHHHHHHHHHHHh-----CCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence 1122333456778888863 4678999999994499999999999999999999999999999999999999
Q ss_pred cccccchhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcC
Q 003472 668 RLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ 747 (817)
Q Consensus 668 RtG~~~a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~ 747 (817)
|||++|+++++||+|||+|+||+|||||+|+||+++++++++.+........+.|++||+|||++||||+++|+++++
T Consensus 285 RtG~~~a~e~~gv~PDiv~~gKgl~gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~-- 362 (472)
T PRK08742 285 RTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFAD-- 362 (472)
T ss_pred CCccchHHHhcCCCCCEEEEcccccCCCCCcceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999899999999999999885322223567999999999999999999999998
Q ss_pred chhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCc-----chHHHHHHHHHHcCCC
Q 003472 748 TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY-----CLIELFLYNFLTTGMH 816 (817)
Q Consensus 748 l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~-----~~~~~~~~~~l~~Gv~ 816 (817)
+++.++++.++++|++ +++.++++|.|++|||+|+|++|||+.+...... .....+...++++||+
T Consensus 363 --~~l~~~~~~~g~~l~~-~~~~~~~~~~i~dvRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll 433 (472)
T PRK08742 363 --DDVIARNQPTAARMTQ-LAAQIGEHPHVADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVV 433 (472)
T ss_pred --CCHHHHHHHHHHHHHH-HHHHHhcCCCeeeEeccceEEEEEeccCccccccCCchhHHHHHHHHHHHHCCeE
Confidence 4566666677777774 5556678999999999999999999865322211 2346678899999985
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-72 Score=639.50 Aligned_cols=397 Identities=22% Similarity=0.305 Sum_probs=321.6
Q ss_pred cchhhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHh
Q 003472 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (817)
Q Consensus 352 ~~~~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~ 431 (817)
++.+++.+++|+|+.... ...|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~---~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~ 78 (451)
T PRK07678 9 ELLAKDEQYVWHGMKPYN---PNATMVVAKAEGA--WVTDIQGN----RYLDGMSGLWCVNVGYG-RKELAEAAYEQLKT 78 (451)
T ss_pred HHHHHhhcccCCCccccc---cCCCeeEEeeeee--EEEeCCCC----EEEEccccHHhhcCCCC-CHHHHHHHHHHHHh
Confidence 444455667888864321 1347889998886 59999999 99999999999999999 99999999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEE
Q 003472 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (817)
Q Consensus 432 ~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~ 511 (817)
+.+... .+.+++..+|+++|++.+|. .++|+|+||||||||+|||+| |+||+++|. ++|++||+
T Consensus 79 ~~~~~~-~~~~~~~~~lae~l~~~~~~--~~~v~f~~sGseA~e~AlklA-r~~t~~~g~------------~~r~~ii~ 142 (451)
T PRK07678 79 LSYFPL-TQSHEPAIKLAEKLNEWLGG--EYVIFFSNSGSEANETAFKIA-RQYHAQKGE------------PHRYKFIS 142 (451)
T ss_pred cCcccc-ccCCHHHHHHHHHHHHhCCC--CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEE
Confidence 876543 45789999999999999875 369999999999999999999 888866554 56889999
Q ss_pred EcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhcc
Q 003472 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (817)
Q Consensus 512 ~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~ 591 (817)
|+++|||+|.+++++++...++.. |. + ..+++.+++.|+.+++. +..
T Consensus 143 ~~~~yHG~t~~als~~~~~~~~~~-----~~---~--------~~~~~~~~~~~~~~~~~--------~~~--------- 189 (451)
T PRK07678 143 RYRAYHGNSMGALAATGQAQRKYK-----YE---P--------LAPGFLHVPPPDCYRMP--------GIE--------- 189 (451)
T ss_pred ECCCcCCccHHHhhcCCCcccccc-----cC---C--------CCCCCEEeCCCcccccc--------ccC---------
Confidence 999999999999999987654432 11 1 11345566666555321 110
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc
Q 003472 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (817)
Q Consensus 592 ~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~ 671 (817)
..+.....+++.+++.|+. .++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||+
T Consensus 190 ~~~~~~~~~~~~l~~~~~~----~~~~~iAAvi~EPi-qg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~ 264 (451)
T PRK07678 190 SEDIYDLECVKEIDRVMTW----ELSETIAAVIMEPI-ITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGK 264 (451)
T ss_pred ChHHHHHHHHHHHHHHHHh----cCCCceEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCch
Confidence 0112233445677888863 34678999999998 999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhc
Q 003472 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN 751 (817)
Q Consensus 672 ~~a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~ 751 (817)
+|+++++||+|||+|+||+|||||+|+||+++++++++.+........+.|++||+|||++||||+|+|++++++ +
T Consensus 265 ~~~~~~~gv~PDivt~gK~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~----~ 340 (451)
T PRK07678 265 AFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENE----N 340 (451)
T ss_pred hHHHHhcCCCCCEEEeecccccCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhC----C
Confidence 999999999999999999999999999999999999998864322224679999999999999999999999884 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCC---CcchHHHHHHHHHHcCCC
Q 003472 752 IIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA---GYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 752 l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~---~~~~~~~~~~~~l~~Gv~ 816 (817)
+.++++.++++|++++.++++++|.|++|||+|+|++|+|+++.... +.+....+...++++||+
T Consensus 341 ~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~ 408 (451)
T PRK07678 341 LIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGLI 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcE
Confidence 55666677777777777788889999999999999999998653111 124567888999999985
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-71 Score=636.04 Aligned_cols=399 Identities=28% Similarity=0.433 Sum_probs=321.8
Q ss_pred hhhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003472 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (817)
Q Consensus 354 ~~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~ 433 (817)
.+++..+.|+|++........+|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~l~ 80 (466)
T PRK07030 8 MQRDLKVLWHPCTQMKDHEQLPLIPIRRGEGV--WLEDFEGK----RYLDAVSSWWVNVFGHA-NPRINQRIKDQVDQLE 80 (466)
T ss_pred HhhhhcccccccccccccccCCCceEEeeecc--EEEECCCC----EEEEcchhHHhhcCCCC-CHHHHHHHHHHHHhcC
Confidence 34456678999876543222235688888886 59999999 99999999999999999 9999999999999988
Q ss_pred ccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEc
Q 003472 434 HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (817)
Q Consensus 434 ~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~ 513 (817)
+.....+.+++..+|+++|++.+|.+ +++|+|+||||||||+|||+| |+|+..+|. ++|.+||+|+
T Consensus 81 ~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGsEAve~AlKlA-r~~~~~~g~------------t~r~~ii~~~ 146 (466)
T PRK07030 81 HVILAGFSHEPVIELSERLVKITPPG-LSRCFYADNGSSAIEVALKMS-FHYWRNRGK------------PRKKRFVTLT 146 (466)
T ss_pred CccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHHhCC------------CCCcEEEEEC
Confidence 76655678999999999999988744 689999999999999999999 777654443 5688999999
Q ss_pred CCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCc
Q 003472 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (817)
Q Consensus 514 gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~ 593 (817)
++|||+|.+++++++...++.. +++. ..++.++|.|+++++.. + ...
T Consensus 147 ~~yHG~t~ga~s~~~~~~~~~~--------~~p~--------~~~~~~~p~~~~~~~~~--------~---------~~~ 193 (466)
T PRK07030 147 NSYHGETLAAMSVGDVALFTET--------YKPL--------LLDTIKVPSPDCYLRPE--------G---------MSW 193 (466)
T ss_pred CCcCcccHHHHhccCCcccccc--------CCcc--------CCCCEEcCCCCcccccc--------C---------CCH
Confidence 9999999999999987655543 1111 12345666676553211 0 011
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc
Q 003472 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (817)
Q Consensus 594 ~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~ 673 (817)
+.....+++.+++.+++ .+++|||||+||++||+||+++||++||++||++|++||++||+|||||||||||++|
T Consensus 194 ~~~~~~~l~~le~~~~~-----~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~ 268 (466)
T PRK07030 194 EEHSRRMFAHMEQTLAE-----HHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMF 268 (466)
T ss_pred HHHHHHHHHHHHHHHHh-----CCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccch
Confidence 22334456778888873 4689999999993399999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCC-ccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcH
Q 003472 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (817)
Q Consensus 674 a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~-~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l 752 (817)
+++++||+|||+|+||+|||||+|+||+++++++++.+.... ....+.|++||+|||++||||+|+|+++++ +++
T Consensus 269 a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~----~~l 344 (466)
T PRK07030 269 ACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQ----DNV 344 (466)
T ss_pred HHHhcCCCCCEEeeehhccCCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHh----cCH
Confidence 999999999999999999999999999999999999885321 123467999999999999999999999998 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCC-CCc----chHHHHHHHHHHcCCC
Q 003472 753 IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN-AGY----CLIELFLYNFLTTGMH 816 (817)
Q Consensus 753 ~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~-~~~----~~~~~~~~~~l~~Gv~ 816 (817)
.++++.++++|+++|.++ .++|.|++|||+|+|++|||+++... ..+ .....+.+.|+++|++
T Consensus 345 ~~~~~~~G~~l~~~L~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl 412 (466)
T PRK07030 345 IENNRALARRMAEATAHL-ADHPHVAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGAL 412 (466)
T ss_pred HHHHHHHHHHHHHHHHHH-hcCCCEEEeEeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeE
Confidence 666677777777777665 57999999999999999999865311 111 2345788999999985
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-71 Score=640.01 Aligned_cols=398 Identities=21% Similarity=0.270 Sum_probs=318.3
Q ss_pred hcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC
Q 003472 357 AGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM 436 (817)
Q Consensus 357 ~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~ 436 (817)
.+..+||||+++.......|+++++++|. |+||.||| +||||++|+|+.+|||+ ||+|++|+++|++++.+..
T Consensus 53 ~~~~~~~p~~~~~~~~~~~p~~i~~~~G~--~l~D~dG~----~ylD~~sg~~~~~lGh~-hp~v~~Av~~ql~~~~~~~ 125 (504)
T PLN02760 53 KGHDMLAPFTAGWQSTDLEPLVIEKSEGS--YVYDINGK----KYLDALAGLWCTALGGS-EPRLVAAATEQLNKLPFYH 125 (504)
T ss_pred ccCCcccCcccccccccCCCceEEeeeee--EEEECCCC----EEEEcCcCHHhcccCCC-CHHHHHHHHHHHhhcccee
Confidence 45568999999876544468899998886 59999999 99999999999999999 9999999999999987653
Q ss_pred C-CCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCC
Q 003472 437 F-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS 515 (817)
Q Consensus 437 ~-~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gs 515 (817)
. ..+.+++..+||++|++.++...+++|+|+||||||||+|||+| |+|+..+|. ++|.+||+|+++
T Consensus 126 ~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlA-r~~~~~~g~------------~~r~~iI~~~~~ 192 (504)
T PLN02760 126 SFWNRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLV-WYYNNALGR------------PNKKKFIARSKS 192 (504)
T ss_pred cccccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEECCC
Confidence 2 24578999999999999854333679999999999999999999 778755443 568899999999
Q ss_pred ccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchh
Q 003472 516 YHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595 (817)
Q Consensus 516 yHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~ 595 (817)
|||+|.+++++++.+.++.. +.++. +++.+++.|+.+++. +++. +.++
T Consensus 193 yHG~t~~a~slsg~~~~~~~------------~~~~~----~~~~~~~~p~~~~~~------~~~~----------~~~~ 240 (504)
T PLN02760 193 YHGSTLISASLSGLPALHQK------------FDLPA----PFVLHTDCPHYWRFH------LPGE----------TEEE 240 (504)
T ss_pred ccCChHhhhhccCChhhccC------------CCCCC----CCcEEeCCCcccccC------CCCC----------cHHH
Confidence 99999999999987655432 11111 223456666554321 0011 1122
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchh
Q 003472 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675 (817)
Q Consensus 596 ~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~ 675 (817)
+...+.+.+++.+.+ .+++++||||+||| ||+||+++||++||++||++|++||++||+|||||||||||++|++
T Consensus 241 ~~~~~~~~le~~l~~----~~~~~iAAvI~EPv-~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~ 315 (504)
T PLN02760 241 FSTRLADNLENLILK----EGPETIAAFIAEPV-MGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGC 315 (504)
T ss_pred HHHHHHHHHHHHHHh----cCCCceEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHH
Confidence 333445667777753 34678999999998 9999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCC-ccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHH
Q 003472 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (817)
Q Consensus 676 e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~-~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~ 754 (817)
+++||+|||+|+||+|||||+|+||+++++++++.+.... ....+.|++||+|||++||||+|+|+++++++ +.+
T Consensus 316 e~~gv~PDivtlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~----l~~ 391 (504)
T PLN02760 316 DKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERN----IPE 391 (504)
T ss_pred HhcCCCCcEEEecccccCCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhCC----HHH
Confidence 9999999999999999999999999999999999885421 12245799999999999999999999999854 455
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCC-----cchHHHHHHHHHHcCCC
Q 003472 755 ERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG-----YCLIELFLYNFLTTGMH 816 (817)
Q Consensus 755 ~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~-----~~~~~~~~~~~l~~Gv~ 816 (817)
+++.++++|+++|.++ +++|+|.+|||.|+|++|+|+++..... .+....+...++++||+
T Consensus 392 ~~~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl 457 (504)
T PLN02760 392 HVNKIAPRFQDGIKAF-SGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGML 457 (504)
T ss_pred HHHHHHHHHHHHHHHH-hcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcE
Confidence 5555666666666655 7899999999999999999987532111 12466788999999985
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-71 Score=635.06 Aligned_cols=400 Identities=21% Similarity=0.269 Sum_probs=321.6
Q ss_pred chhhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhc
Q 003472 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (817)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~ 432 (817)
+.+.+.+++|+||+++..+....|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~ 83 (466)
T PRK07036 11 LAQADKRHLLHPWHDFSSLGKEGSLVIVEAEGI--YVTDADGR----RYLDGIGGMWCVNVGYG-REEMADAIADQARRL 83 (466)
T ss_pred HHHHhhcccccCccCccccccCCCceEEeCcee--EEEECCCC----EEEECcccHHhhcCCCC-CHHHHHHHHHHHHhC
Confidence 344566789999988755444458899998886 59999999 99999999999999999 999999999999998
Q ss_pred cccCCCC-CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEE
Q 003472 433 GHVMFPE-NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (817)
Q Consensus 433 ~~~~~~~-~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~ 511 (817)
.+.+... ..+++..+||++|++.+|.+ +++|+|+||||||||+|||+| |+|++.+|. ++|++||+
T Consensus 84 ~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~------------t~r~~Ii~ 149 (466)
T PRK07036 84 PYYTPFGDMTNAPAAELAAKLAELAPGD-LNHVFLTTGGSTAVDSALRFV-HYYFNVRGR------------PAKKHIIT 149 (466)
T ss_pred cccccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCchHHHHHHHHHH-HHHHHhcCC------------CCccEEEE
Confidence 7765333 67999999999999988754 689999999999999999999 788765543 56889999
Q ss_pred EcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhcc
Q 003472 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (817)
Q Consensus 512 ~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~ 591 (817)
|+++|||+|.+++++++.+.++.. |.+ . .+++.+++.|+++++.. +.
T Consensus 150 ~~~~YHG~t~~a~s~~~~~~~~~~-----~~~-------~----~~~~~~~~~p~~~~~~~--------~~--------- 196 (466)
T PRK07036 150 RGDAYHGSTYLTASLTGKAADRTE-----FDY-------A----SDLVHHLSSPNPYRRPA--------GM--------- 196 (466)
T ss_pred EcCccCCccHhhhcccCCCccccc-----ccC-------C----CCCcEEecCCccccccc--------CC---------
Confidence 999999999999999986655432 211 0 12345666665543210 00
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc
Q 003472 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (817)
Q Consensus 592 ~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~ 671 (817)
........+.+.+++.+.. .++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||+
T Consensus 197 ~~~~~~~~~~~~~~~~i~~----~~~~~iAavi~EPv-~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~ 271 (466)
T PRK07036 197 SEAAFCDFLVDEFEDKILS----LGADNIAAFIAEPI-LGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGH 271 (466)
T ss_pred ChHHHHHHHHHHHHHHHHH----cCCCceEEEEEeCC-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCch
Confidence 0112223345566666653 35689999999998 999999999999999999999999999999999999999999
Q ss_pred cchhh-hcCCCCceeecccccCCCCCcceEEEechHHHhhhcCC-CccceeecccCCCCCHHHHHHHHHHHHHhcCcCch
Q 003472 672 ETTAD-LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTN 749 (817)
Q Consensus 672 ~~a~e-~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~-~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~ 749 (817)
+|+++ ++|++|||+|+||+|||||+|+||+++++++++.+... .....+.|++||+|||++||+|+++|++++++
T Consensus 272 ~~~~~~~~gv~PDivt~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~--- 348 (466)
T PRK07036 272 FFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMERE--- 348 (466)
T ss_pred hhhhhhhcCCCCCEEEEccccccCccccEEEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhC---
Confidence 99998 79999999999999999999999999999999988532 11123579999999999999999999999884
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCC-----cchHHHHHHHHHHcCCC
Q 003472 750 HNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG-----YCLIELFLYNFLTTGMH 816 (817)
Q Consensus 750 ~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~-----~~~~~~~~~~~l~~Gv~ 816 (817)
++.++++.++++|+++|.+ ++++|.|++|||.|+|++|||+++..... ......+...|+++||+
T Consensus 349 -~l~~~~~~~g~~l~~~L~~-l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl 418 (466)
T PRK07036 349 -GLCEHVREVGPYFEERLAS-LRELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLL 418 (466)
T ss_pred -CHHHHHHHHHHHHHHHHHH-hccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcE
Confidence 4555566666666666654 46799999999999999999986532111 13456788899999986
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-71 Score=631.79 Aligned_cols=396 Identities=21% Similarity=0.287 Sum_probs=316.1
Q ss_pred hhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccc
Q 003472 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (817)
Q Consensus 355 ~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~ 434 (817)
+.+.+++|+|++++..+....|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~~ 84 (456)
T PRK07480 12 ALDAAHHLHPFSDMKALNEKGSRVITRAEGV--YLWDSEGN----KILDGMAGLWCVNVGYG-RKELADAAARQMRELPY 84 (456)
T ss_pred hhhhcccccCcccccccccCCCceEEeceee--EEEeCCCC----EEEEccchHHHhcCCCC-CHHHHHHHHHHHHhcCC
Confidence 3455678999877654332357889988885 69999999 99999999999999999 99999999999999876
Q ss_pred cCC-CCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEc
Q 003472 435 VMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (817)
Q Consensus 435 ~~~-~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~ 513 (817)
... ..+.+++..+||++|++.+|.+ +++|+|++|||||||+|||+| |+|+..+|. ++|.+||+|+
T Consensus 85 ~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AlklA-r~~~~~~g~------------~~r~~ii~~~ 150 (456)
T PRK07480 85 YNTFFKTTHPPAIELAAKLAEVAPPG-FNHVFFTNSGSEANDTVLRMV-RHYWALKGK------------PQKKVIISRK 150 (456)
T ss_pred cccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEEC
Confidence 542 2467999999999999998754 689999999999999999999 788765543 5688999999
Q ss_pred CCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCc
Q 003472 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (817)
Q Consensus 514 gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~ 593 (817)
++|||+|.+++++++...++.. .+++ .+++.+++.|+++++. ++ .+.
T Consensus 151 ~~yHG~tl~a~s~~g~~~~~~~--------~~~~--------~~~~~~~~~p~~~~~~--------~~---------~~~ 197 (456)
T PRK07480 151 NGYHGSTVAGASLGGMKYMHEQ--------GDLP--------IPGIVHIDQPYWFGEG--------GD---------MTP 197 (456)
T ss_pred CCcCCcchhhhhccCChhhhcc--------cCCC--------CCCCeecCCCcccccc--------cC---------CCh
Confidence 9999999999999986544331 1111 1234566666655431 00 011
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc
Q 003472 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (817)
Q Consensus 594 ~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~ 673 (817)
.+....+.+.+++.+.+ .++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||++|
T Consensus 198 ~~~~~~~~~~l~~~~~~----~~~~~vAAvi~EPi-qg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~ 272 (456)
T PRK07480 198 EEFGLAAARQLEAKILE----LGADNVAAFIGEPI-QGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWF 272 (456)
T ss_pred HHHHHHHHHHHHHHHHh----cCCCcEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchh
Confidence 22333345667665543 34678999999998 99999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHH
Q 003472 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (817)
Q Consensus 674 a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~ 753 (817)
+++++||+|||+|+||+|||||+|+||+++++++++.+.... ..+.|++||+|||++||||+|+|+++++++ +.
T Consensus 273 a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~--~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~----l~ 346 (456)
T PRK07480 273 GSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEG--GEFNHGFTYSGHPVAAAVALANLRILRDEG----IV 346 (456)
T ss_pred hhhhcCCCCCeeeeehhhccCCccceEEEEcHHHHHHHhcCC--CCcccCCCCCcCHHHHHHHHHHHHHHHhCC----HH
Confidence 999999999999999999999999999999999999884211 235799999999999999999999999854 45
Q ss_pred HHH-HHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCC-CCc----chHHHHHHHHHHcCCC
Q 003472 754 PER-RILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN-AGY----CLIELFLYNFLTTGMH 816 (817)
Q Consensus 754 ~~~-~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~-~~~----~~~~~~~~~~l~~Gv~ 816 (817)
+++ +.++++|++++.+ +++||.|++|||+|+|++|||+++... ..+ .....+...|+++||+
T Consensus 347 ~~~~~~~g~~l~~~l~~-l~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll 414 (456)
T PRK07480 347 ERVRDDTGPYLQKRLRE-LADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLI 414 (456)
T ss_pred HHHHHHHHHHHHHHHHH-hhcCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcE
Confidence 555 3566666666666 567999999999999999999865321 111 1235677889999985
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-70 Score=628.66 Aligned_cols=401 Identities=20% Similarity=0.263 Sum_probs=321.4
Q ss_pred chhhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhc
Q 003472 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (817)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~ 432 (817)
+.+++.++.|+|+..+..+....|+++++++|. ++||.||| +||||++|+|+.++||+ ||+|++|+++|++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~ 80 (460)
T PRK06105 8 LEARDIAYHLHPYTNARRHEEEGPLVIERGEGI--YVYDDAGK----RYIEGMAGLWSVALGFS-EQRLVEAAARQMKKL 80 (460)
T ss_pred HHHhhhhhcccCCcccccccccCCceEEeeeEE--EEEECCCC----EEEEcchhHHhccCCCC-CHHHHHHHHHHHHhC
Confidence 345566788999876643322357889988885 59999999 99999999999999999 999999999999998
Q ss_pred cccC-CCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEE
Q 003472 433 GHVM-FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (817)
Q Consensus 433 ~~~~-~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~ 511 (817)
.+.. +..+.+++..+|+++|++.+|.+ +++|+|+||||||||+|||+| |+|+..+|. ++|++||+
T Consensus 81 ~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseAve~AlKla-r~~~~~~g~------------t~r~~il~ 146 (460)
T PRK06105 81 PFYHTFSHKSHGPVIDLAEKLVAMAPVP-MSKVFFTNSGSEANDTVVKLV-WYYNNALGR------------PEKKKIIS 146 (460)
T ss_pred CCeecccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEE
Confidence 7643 22357999999999999998754 689999999999999999999 777755443 56889999
Q ss_pred EcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhcc
Q 003472 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (817)
Q Consensus 512 ~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~ 591 (817)
++++|||+|.+++++++.+.++.. +++. .+++.+++.|+.+++ ++.. .
T Consensus 147 ~~~~yHG~t~~a~s~t~~~~~~~~--------~~~~--------~~~~~~~~~p~~~~~----------~~~~------~ 194 (460)
T PRK06105 147 RQRGYHGVTIASASLTGLPNNHRS--------FDLP--------LDRILHTGCPHYYRF----------GLPG------E 194 (460)
T ss_pred ecCccCCcchhheeccCCcccccc--------cCCC--------CCCCEEcCCCccccc----------ccCC------C
Confidence 999999999999999986544432 1111 123456677755432 1110 0
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc
Q 003472 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (817)
Q Consensus 592 ~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~ 671 (817)
..+.....+.+.+|+.++. .++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||+
T Consensus 195 ~~~~~~~~~~~~le~~~~~----~~~~~iAavIvEPi-qg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~ 269 (460)
T PRK06105 195 SEEAFATRLANELEALILA----EGPDTIAAFIGEPV-MGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGN 269 (460)
T ss_pred ChHHHHHHHHHHHHHHHHH----cCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCch
Confidence 1123334456778888753 34578999999998 999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCc-cceeecccCCCCCHHHHHHHHHHHHHhcCcCchh
Q 003472 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNH 750 (817)
Q Consensus 672 ~~a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~-~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~ 750 (817)
+|+++++||+|||+|+||+|||||+|+|++++++++++.+..... ...+.|++||+|||++||+|+++|++++++
T Consensus 270 ~f~~~~~~v~PDi~~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~---- 345 (460)
T PRK06105 270 MFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEER---- 345 (460)
T ss_pred hhhHHhcCCCCCeeeeecccccCcccceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhc----
Confidence 999999999999999999999999999999999999998864321 123569999999999999999999999984
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCC-Cc----chHHHHHHHHHHcCCC
Q 003472 751 NIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA-GY----CLIELFLYNFLTTGMH 816 (817)
Q Consensus 751 ~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~-~~----~~~~~~~~~~l~~Gv~ 816 (817)
++.++++.++++|+++|.++ +++|.|++|||+|+|++|||+.+.... .+ +....+.+.++++||+
T Consensus 346 ~l~~~v~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl 415 (460)
T PRK06105 346 DLVGNAAERGARLQARLRAL-ADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVI 415 (460)
T ss_pred cHHHHHHHHHHHHHHHHHHh-hcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCeE
Confidence 45555566666677777776 889999999999999999998653211 11 2346788899999985
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-70 Score=629.26 Aligned_cols=399 Identities=27% Similarity=0.407 Sum_probs=320.7
Q ss_pred hhhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003472 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (817)
Q Consensus 354 ~~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~ 433 (817)
.+++.+++|+|++++..+....|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~l~ 89 (460)
T PRK06916 17 SEKNKAYVWHPFTQMKDYLEEDPLIIERGEGR--KLYDVNGN----EYYDGVSSIWLNVHGHQ-VPELDEAIREQLNKIA 89 (460)
T ss_pred HHHHhhccccccccccccccCCCeeEEecccc--EEEeCCCC----EEEEcchhHHHhhcCCC-CHHHHHHHHHHHHhCC
Confidence 34455678999876533222358899998886 59999999 99999999999999999 9999999999999988
Q ss_pred ccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEc
Q 003472 434 HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (817)
Q Consensus 434 ~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~ 513 (817)
+.......+++..+||++|++.+|.+ +++|+|+||||||||+|||+| |+|+..+|. ++|.+||+|+
T Consensus 90 ~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseAve~AlklA-r~~~~~~g~------------tgr~~ii~~~ 155 (460)
T PRK06916 90 HSTLLGLANVPSILLAEKLIEVVPEG-LKKVFYSDSGATAVEIAIKMA-FQYWQNKGK------------PKKQRFVTLK 155 (460)
T ss_pred CccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEEC
Confidence 76544567999999999999998754 689999999999999999999 777765543 5688999999
Q ss_pred CCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCc
Q 003472 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (817)
Q Consensus 514 gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~ 593 (817)
++|||+|.+++++++...++.. ++++ ..++.++|.|+.+++. ++. +.
T Consensus 156 ~~YHG~t~~als~s~~~~~~~~--------~~~~--------~~~~~~~p~p~~~~~~--------~~~---------~~ 202 (460)
T PRK06916 156 NAYHGDTIGAVSVGAIDLFHQV--------YSSL--------LFEAIKMPYPYTYRSP--------YGN---------DK 202 (460)
T ss_pred CcCCcccHHhHhccCCcccccc--------cCCC--------CCCCEEeCCCcccccc--------cCC---------Ch
Confidence 9999999999999987655542 1111 1234566777655321 110 11
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc
Q 003472 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (817)
Q Consensus 594 ~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~ 673 (817)
++....+.+.+++.|+ .++++|||||+||++||+||+++||++||++||++|++||++||+|||||||||||++|
T Consensus 203 ~~~~~~~~~~l~~~l~-----~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~ 277 (460)
T PRK06916 203 AEIVKKHLEELEELLK-----EKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMF 277 (460)
T ss_pred HHHHHHHHHHHHHHHH-----hCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhh
Confidence 2333445677888887 34689999999993399999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCC-ccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcH
Q 003472 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (817)
Q Consensus 674 a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~-~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l 752 (817)
+++++||+|||+|+||+|||||+|+||+++++++++.+.... ....+.|++||+|||++||||+++|+++++++ +
T Consensus 278 a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~----l 353 (460)
T PRK06916 278 ACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTN----L 353 (460)
T ss_pred HHHhcCCCCCeeeeehhhhcCccccceeeecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhcc----H
Confidence 999999999999999999999999999999999999875321 11245799999999999999999999998854 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCC-c----chHHHHHHHHHHcCCC
Q 003472 753 IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG-Y----CLIELFLYNFLTTGMH 816 (817)
Q Consensus 753 ~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~-~----~~~~~~~~~~l~~Gv~ 816 (817)
.++++.++++|++.+.++ .++|.|++|||+|+|++|||+++..... + .....+.+.++++||+
T Consensus 354 ~~~~~~~g~~l~~~l~~l-~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl 421 (460)
T PRK06916 354 IEQVARKTEYVATQLEDL-FALKHVGDIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGML 421 (460)
T ss_pred HHHHHHHHHHHHHHHHHh-hcCCCeEEeecCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeE
Confidence 455556666666666655 4589999999999999999986532211 1 2346788999999985
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-70 Score=626.95 Aligned_cols=396 Identities=18% Similarity=0.245 Sum_probs=315.9
Q ss_pred hhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccc
Q 003472 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (817)
Q Consensus 355 ~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~ 434 (817)
+++..+.|+||+++.......|+++++++|. ++||.||| +||||++|+|+.+|||+ ||+|++|+++|++++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-hp~v~~A~~~q~~~~~~ 88 (460)
T PRK12403 16 AADAAHHIHAFLDQKALNAEGPRVMVRGEGL--HLWDNDGK----RYLDGMSGLWCTNLGYG-RKDLAAAAARQMEQLPY 88 (460)
T ss_pred HhhhcccccccccccccccCCCceEEeceee--EEEeCCCC----EEEECchhHHhhcCCCC-CHHHHHHHHHHHHhCCC
Confidence 3445678999887643322357899998886 59999999 99999999999999999 99999999999999887
Q ss_pred cCCC-CCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEc
Q 003472 435 VMFP-ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (817)
Q Consensus 435 ~~~~-~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~ 513 (817)
.+.. ...+++..+|+++|++++|.+ +++|+|+||||||||+|||+| |.|+...|. ++|.+||.+.
T Consensus 89 ~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AiklA-r~~~~~~g~------------~~r~~ii~~~ 154 (460)
T PRK12403 89 YNMFFHTTHPAVIELSELLFSLLPGH-YSHAIYTNSGSEANEVLIRTV-RRYWQVLGK------------PQKKIMIGRW 154 (460)
T ss_pred eecccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhhCC------------CCCcEEEEEC
Confidence 5432 456899999999999998753 689999999999999999999 778654332 4577899999
Q ss_pred CCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCc
Q 003472 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (817)
Q Consensus 514 gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~ 593 (817)
++|||+|.+++++|+...++.. ++ ..+++.+++.|++|++.. +. ..
T Consensus 155 ~~yHG~t~~~~s~s~~~~~~~~---------~~--------~~~~~~~~~~p~~~~~~~---------~~--------~~ 200 (460)
T PRK12403 155 NGYHGSTLAATALGGMKFMHEM---------GG--------LIPDVAHIDEPYWYANGG---------EL--------TP 200 (460)
T ss_pred CCcCcccHhhhhcCCCcccccc---------CC--------CCCCCEEeCCCccccccc---------CC--------Ch
Confidence 9999999999999986544321 11 113455677776654210 10 01
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc
Q 003472 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (817)
Q Consensus 594 ~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~ 673 (817)
....+.+.+.+++.+.+ .+++++||||+||| ||+||+++||++||++||++|++||++||+|||||||||||++|
T Consensus 201 ~~~~~~~~~~le~~~~~----~~~~~iaavI~Epv-~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~ 275 (460)
T PRK12403 201 AEFGRRAALQLEEKILE----LGAENVAGFVAEPF-QGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWF 275 (460)
T ss_pred HHHHHHHHHHHHHHHHH----hCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh
Confidence 12233345667666643 34578999999998 99999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHH
Q 003472 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (817)
Q Consensus 674 a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~ 753 (817)
+++++||+|||+|+||+|||||+|+||+++++++++.+.... ..+.|++||+|||++||||+|+|+++++++ +.
T Consensus 276 a~e~~gv~PDiv~~gK~lggG~~Piga~v~~~~i~~~~~~~~--~~~~~~~T~~gnPl~~Aaala~L~~i~~~~----l~ 349 (460)
T PRK12403 276 AHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQG--GVFAHGLTYSGHPVAAAVAIANLKALRDEG----VV 349 (460)
T ss_pred hhhhcCCCCCeEEEcccccccccceEEEEECHHHHHHHhcCC--CccccCCCCCCCHHHHHHHHHHHHHHHhcc----HH
Confidence 999999999999999999999889999999999999885432 245699999999999999999999999844 45
Q ss_pred HHHH-HHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCC-c----chHHHHHHHHHHcCCC
Q 003472 754 PERR-ILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG-Y----CLIELFLYNFLTTGMH 816 (817)
Q Consensus 754 ~~~~-~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~-~----~~~~~~~~~~l~~Gv~ 816 (817)
++++ .++++|++.|.++.+++|.|++|||.|+|++|||+++..... . .....+...++++|++
T Consensus 350 ~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll 418 (460)
T PRK12403 350 TRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVI 418 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHHHHHHhCCEE
Confidence 5553 566666667777778999999999999999999986531111 1 1234466778999975
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-70 Score=623.78 Aligned_cols=378 Identities=21% Similarity=0.271 Sum_probs=308.2
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||+ +||||++|+|++++||+ ||+|++|+++|++++.+.....+.+++..+|+++|++
T Consensus 12 ~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~ 84 (443)
T PRK07483 12 TLPVAVAGEGI--YLIDATGK----RYLDASGGAAVSCLGHS-HPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVA 84 (443)
T ss_pred CCceEEeceEE--EEEeCCCC----EEEEcCccHhhhccCCC-CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHH
Confidence 47888888775 59999999 99999999999999999 9999999999999987654334578999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
.+|.+ +++|+|+||||||||+|||+| |+|+..+|. ++|.+||+|+++|||+|.+++++++...++.
T Consensus 85 ~~p~~-~~~v~f~~sGsEAve~AlklA-r~~~~~~g~------------~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~ 150 (443)
T PRK07483 85 AAPAG-LEHVYFVSGGSEAVEAALKLA-RQYFVEIGQ------------PQRRHFIARRQSYHGNTLGALAIGGNAWRRE 150 (443)
T ss_pred hCCCC-CCEEEEcCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEECCCcCCcCHHHhhhcCCccccc
Confidence 88754 689999999999999999999 777655443 5688999999999999999999998654443
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
+ +++.+ +++.+++.|+.| ++.. ...........+++.+++.+.+
T Consensus 151 ~--------~~p~~--------~~~~~~~~~~~~------------~~~~----~~~~~~~~~~~~~~~l~~~~~~---- 194 (443)
T PRK07483 151 P--------FAPLL--------IEAHHVSPCYAY------------REQR----AGESDEAYGQRLADELEAKILE---- 194 (443)
T ss_pred c--------cCCCC--------CCCEEeCCCccc------------cccc----cCCCHHHHHHHHHHHHHHHHHh----
Confidence 2 11111 223445555433 2210 0001123334456777776653
Q ss_pred CCCCcEEEEEEcccccc-CCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 615 KVSGCIGALIIEPVVHA-AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg-~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
.++++|||||+||| || +||+++||++||++||++|++||++||+|||||||||||++|+++++||+|||+|+||+|||
T Consensus 195 ~~~~~iAAvivEPi-qg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~g 273 (443)
T PRK07483 195 LGPDTVAAFVAETV-VGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVTIAKGLGA 273 (443)
T ss_pred cCCCceEEEEEeCc-ccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeeeehhhhcc
Confidence 35678999999998 98 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
||+|+|++++++++++.+.... ..+.|++||+|||++||+|+|+|+++++ +++.++++.++++|+++|.+++++
T Consensus 274 G~~Pi~av~~~~~i~~~~~~~~--~~~~h~~T~~gnpl~~aaa~a~l~~i~~----~~l~~~~~~~g~~l~~~L~~l~~~ 347 (443)
T PRK07483 274 GYQPIGAVLASDRIYDAIADGS--GFFQHGHTYLGHATACAAALAVQRVIAE----DGLLANVRARGEQLRARLRERLGQ 347 (443)
T ss_pred CccccEEEEEcHHHHHHHhcCC--CccccCCCCCCCHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9889999999999999885321 2456999999999999999999999998 456666777777788888888889
Q ss_pred CCCcceEEeeeeEEEEEEecCCCCCC-----cchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCNAG-----YCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~~~-----~~~~~~~~~~~l~~Gv~ 816 (817)
+|.|.+|||+|+|++|||+++..... .+....+...++++|++
T Consensus 348 ~~~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll 395 (443)
T PRK07483 348 HPHVGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLM 395 (443)
T ss_pred CCCeeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcE
Confidence 99999999999999999986532111 13456788999999985
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-70 Score=623.82 Aligned_cols=386 Identities=22% Similarity=0.271 Sum_probs=314.7
Q ss_pred hhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccc
Q 003472 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (817)
Q Consensus 355 ~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~ 434 (817)
+.+..++|+||+.+.. ..|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+
T Consensus 18 ~~~~~~~~~~~~~~~~---~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~~ 87 (451)
T PRK06062 18 ALDRAHVFHSWSAQGK---INPMVIAGAEGS--YVWDYEGR----RYLDFSSQLVNTNIGHQ-HPKVVAAIQEQAARLCT 87 (451)
T ss_pred Hhhhhhcccccccccc---CCCceEEeceee--EEEECCCC----EEEEcccCHHhhcCCCC-CHHHHHHHHHHHHhcCC
Confidence 3445668888876421 357889888885 59999999 99999999999999999 99999999999999887
Q ss_pred cCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcC
Q 003472 435 VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKG 514 (817)
Q Consensus 435 ~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~g 514 (817)
... .+.+++..+||++|++.+|.+ +++|+|+||||||||+|||+| |.||+| ++||+|++
T Consensus 88 ~~~-~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGsEAve~AlklA-r~~tgr------------------~~ii~~~~ 146 (451)
T PRK06062 88 VAP-AHANDARSEAARLIAERAPGD-LSKVFFTNGGADANEHAVRMA-RLHTGR------------------PKVLSAYR 146 (451)
T ss_pred cCC-ccCCHHHHHHHHHHHHhCCCC-CCEEEEcCChHHHHHHHHHHH-HHhhCC------------------ceEEEEeC
Confidence 654 567999999999999998754 689999999999999999999 788653 58999999
Q ss_pred CccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCch
Q 003472 515 SYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (817)
Q Consensus 515 syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~ 594 (817)
+|||+|.+++++++.+.++.. + | ..+++..++.|+.+++ +|... ..+
T Consensus 147 ~yHG~t~~als~~~~~~~~~~---------~-----~---~~~~~~~~~~p~~~~~--------~~~~~--------~~~ 193 (451)
T PRK06062 147 SYHGGTGSAINLTGDPRRWPN---------D-----T---GRAGVVHFFGPFLYRS--------EFHAT--------TEE 193 (451)
T ss_pred CCCCCCHHHHhhcCCcccccC---------C-----C---CCCCCEEeCCCCcccc--------ccCCC--------ChH
Confidence 999999999999975433210 0 0 1124445556655432 12100 011
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch
Q 003472 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (817)
Q Consensus 595 ~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a 674 (817)
+....+.+.+++.|+. .++++|||||+||| ||++|+++||++||++||++|++||++||+|||||||||||++|+
T Consensus 194 ~~~~~~~~~le~~l~~----~~~~~iAaviiEPv-~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a 268 (451)
T PRK06062 194 EECERALAHLERVIEL----EGPSTIAAILLESV-PGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFA 268 (451)
T ss_pred HHHHHHHHHHHHHHHh----cCCCceEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHH
Confidence 2333456788888863 34578999999998 999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHH
Q 003472 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (817)
Q Consensus 675 ~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~ 754 (817)
++++||+|||+|+||+|||||+|+||+++++++++.+.. ..+.|++||+|||++||+|+|+|++++++ ++.+
T Consensus 269 ~~~~gv~PDi~t~gK~lggG~~Pigav~~~~~i~~~~~~----~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~----~l~~ 340 (451)
T PRK06062 269 IEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFAD----RPYPGGLTYSGHPLACAAAVATINAMEEE----GIVE 340 (451)
T ss_pred HHhcCCCCCeeeechhhhcCCcCcEEEEEcHHHHHHhcc----CCCCCCCCCCCCHHHHHHHHHHHHHHHhc----CHHH
Confidence 999999999999999999999999999999999998853 23569999999999999999999999884 5666
Q ss_pred HHHHHH-HHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCc--------chHHHHHHHHHHcCCCC
Q 003472 755 ERRILR-ELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY--------CLIELFLYNFLTTGMHP 817 (817)
Q Consensus 755 ~~~~lg-~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~--------~~~~~~~~~~l~~Gv~~ 817 (817)
+++.++ ++|+++|.++.+++|.|++|||.|+|++|+|+++.....+ +....+...++++||++
T Consensus 341 ~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~ 412 (451)
T PRK06062 341 NAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLP 412 (451)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEE
Confidence 666777 4677777777788999999999999999999864211111 24678899999999973
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-68 Score=608.97 Aligned_cols=400 Identities=22% Similarity=0.311 Sum_probs=321.4
Q ss_pred cchhhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHh
Q 003472 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (817)
Q Consensus 352 ~~~~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~ 431 (817)
.+.+.+.+++||||+.........|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Av~~q~~~ 83 (460)
T PRK06541 11 DLQALAKRHLWMHFTRHGAYIDAPVPVIVRGEGC--YIWDDRGK----RYLDGLAGLFVVQVGHG-RAELAEAAAKQAGT 83 (460)
T ss_pred HHHHHhhcccccCccCccccccCCCceEEeCccc--EEEeCCCC----EEEECCccHHhccCCCC-CHHHHHHHHHHHhh
Confidence 4455667899999999855432357889998886 59999999 99999999999999999 99999999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEE
Q 003472 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (817)
Q Consensus 432 ~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~ 511 (817)
+.+.+...+.+++..+||++|++.+|.+ +++|+|+||||||||+|||+| |.|++..|. ++|.+||+
T Consensus 84 ~~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~------------~~r~~ii~ 149 (460)
T PRK06541 84 LAFFPLWSYAHPPAIELAERLAALAPGD-LNRVFFTTGGSEAVESAWKLA-KQYFKLTGK------------PGKHKVIS 149 (460)
T ss_pred CcCccccccCCHHHHHHHHHHHHhCCCC-cCEEEEcCCcHHHHHHHHHHH-HHHHHhcCC------------CCccEEEE
Confidence 8876544577999999999999988754 689999999999999999999 777644332 46789999
Q ss_pred EcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhcc
Q 003472 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (817)
Q Consensus 512 ~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~ 591 (817)
|+++|||+|.+++++++.+.++.. +++. .+++.+++.|+.++++ .|++
T Consensus 150 ~~~~yHG~t~~a~s~~~~~~~~~~--------~~~~--------~~g~~~~~~~~~~~~~-------~~~~--------- 197 (460)
T PRK06541 150 RAIAYHGTTQGALAITGLPAFKAP--------FEPL--------VPGGFRVPNTNFYRAP-------ELGD--------- 197 (460)
T ss_pred EcCcccCcchhhhcCcCChhhccc--------cCCC--------CCCcEEeCCCcccccc-------ccCC---------
Confidence 999999999999999986654432 1111 1345566766655321 0211
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc
Q 003472 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (817)
Q Consensus 592 ~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~ 671 (817)
+.+++...+++.+++.+++ .+++++||||+||| |+++|++++|++||++|+++|++||++||+|||||||||||+
T Consensus 198 ~~~~~~~~~~~~l~~~l~~----~~~~~~Aavi~EPv-~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~ 272 (460)
T PRK06541 198 DPEAFGRWAADRIEEAIEF----EGPDTVAAVFLEPV-QNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGE 272 (460)
T ss_pred CHHHHHHHHHHHHHHHHHh----cCCCCEEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCch
Confidence 1123344556788888864 24678999999998 999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhc
Q 003472 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN 751 (817)
Q Consensus 672 ~~a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~ 751 (817)
+|+++++|++|||+|+||+|||||+|+|++++++++++.+.... ..+.|++||++||++||+|+++|++++++++.
T Consensus 273 ~~a~~~~gv~PDivt~gK~l~~G~~pigav~~~~~i~~~~~~~~--~~~~~~~T~~gnp~~~aaala~l~~l~~~~~~-- 348 (460)
T PRK06541 273 MFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGP--TMFLHGYTFGGHPVSAAVALANLDIFEREGLL-- 348 (460)
T ss_pred hhhhhhcCCCCCEEEecccccCCccceeEEEEcHHHHHHhhcCC--CccccCCCCCCCHHHHHHHHHHHHHHHhccHH--
Confidence 99999999999999999999999889999999999999885432 34678999999999999999999999885544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCC-Ccc-------hHHHHHHHHHHcCCC
Q 003472 752 IIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA-GYC-------LIELFLYNFLTTGMH 816 (817)
Q Consensus 752 l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~-~~~-------~~~~~~~~~l~~Gv~ 816 (817)
++++.++++|.++|.++. ++|.|.+|||.|+|++|||+++.... .+. ....+...|+++||+
T Consensus 349 --~~~~~~g~~l~~~L~~l~-~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 418 (460)
T PRK06541 349 --DHVRDNEPAFRATLEKLL-DLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLY 418 (460)
T ss_pred --HHHHHHHHHHHHHHHHhh-cCCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeE
Confidence 455555666666665554 48999999999999999998652111 111 113577899999985
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-68 Score=605.24 Aligned_cols=374 Identities=23% Similarity=0.258 Sum_probs=303.9
Q ss_pred EEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcC
Q 003472 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG 457 (817)
Q Consensus 378 vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~ 457 (817)
++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+.....+.+++..+|+++|++.+|
T Consensus 16 ~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p 88 (447)
T PRK06917 16 VISHGKGV--YLYDQNGN----KYFDGSSGAVTAGIGHG-VKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSP 88 (447)
T ss_pred eEEeeeee--EEEeCCCC----EEEECchhHHhccCCCC-CHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCC
Confidence 57887775 59999999 99999999999999999 9999999999999986654334678999999999999987
Q ss_pred CCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCC
Q 003472 458 KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537 (817)
Q Consensus 458 ~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~ 537 (817)
.+ +++++|+||||||||+|||+| |+|+..+|. ++|.+||+|+++|||+|.+++++++...++..
T Consensus 89 ~~-~~~v~f~~sGsEAve~AlklA-r~~~~~rg~------------t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~-- 152 (447)
T PRK06917 89 GD-LNWSFFVNSGSEANETAMKIA-IQHFQERGI------------QGKHKILSRWMSYHGITMGALSMSGHPLRRQR-- 152 (447)
T ss_pred CC-CCEEEEeCChHHHHHHHHHHH-HHHHHhcCC------------CCCCEEEEECCCcCCccHHHHHhcCCcccccc--
Confidence 54 579999999999999999999 677655554 67899999999999999999999886544432
Q ss_pred CCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 003472 538 QPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (817)
Q Consensus 538 ~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~ 617 (817)
+++++ +++..++.|..+++. +++ +...+...+.+.+++.+++ .+.
T Consensus 153 ------~~~~~--------~~~~~~~~p~~~~~~--------~~~---------~~~~~~~~~~~~le~~i~~----~~~ 197 (447)
T PRK06917 153 ------FVSLL--------EDYPTISAPYCYRCP--------VQK---------VYPTCQLACATELETAIER----IGA 197 (447)
T ss_pred ------CCCCC--------CCCeEeCCCcccccc--------cCC---------ChHHHHHHHHHHHHHHHHh----cCC
Confidence 11111 122344445433211 111 1122333455778888874 334
Q ss_pred CcEEEEEEcccccc-CCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCCCC
Q 003472 618 GCIGALIIEPVVHA-AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVI 696 (817)
Q Consensus 618 ~~iAAvIvEPV~qg-~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggGy~ 696 (817)
++|||||+||| |+ .||+++||++|+++||++|++||++||+|||||||||||++|+++++||+|||+|+||+|||||+
T Consensus 198 ~~iAAvi~EPi-~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~~gK~l~~G~~ 276 (447)
T PRK06917 198 EHIAAFIAEPI-IGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMTLGKGLGAGYT 276 (447)
T ss_pred CceEEEEEecc-ccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCCEEEeeehhccCCc
Confidence 68999999998 88 57899999999999999999999999999999999999999999999999999999999999988
Q ss_pred cceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC
Q 003472 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (817)
Q Consensus 697 PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~ 776 (817)
|+||+++++++++.+.... ..+.|++||+|||++||||+++|++++++ ++.++++.++++|+++|.++.+++|.
T Consensus 277 Pi~a~~~~~~i~~~~~~~~--~~~~~~~T~~gnpl~~aaa~a~l~~l~~~----~l~~~~~~~g~~l~~~L~~l~~~~~~ 350 (447)
T PRK06917 277 PIAATVVSDRVMEPILRGS--RSIMSGHTLSANPLSAATALAVLEYMEKH----NLPEKAAEKGEYLIKGLQKVQQQSTI 350 (447)
T ss_pred ceEEEEEcHHHHHHHhccC--cccccccCCCCCHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999886432 24578999999999999999999999884 45566666777777778877788999
Q ss_pred cceEEeeeeEEEEEEecCCCCCC-----cchHHHHHHHHHHcCCC
Q 003472 777 VQRVVALGTLCAIELQAAGCNAG-----YCLIELFLYNFLTTGMH 816 (817)
Q Consensus 777 V~~VrG~Glm~gIel~~~~~~~~-----~~~~~~~~~~~l~~Gv~ 816 (817)
|.+|||.|+|++|||+++..... .+....+...|+++||+
T Consensus 351 i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl 395 (447)
T PRK06917 351 IGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLL 395 (447)
T ss_pred EEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcE
Confidence 99999999999999986532111 13577889999999985
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-68 Score=601.68 Aligned_cols=380 Identities=26% Similarity=0.387 Sum_probs=304.5
Q ss_pred hhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccc
Q 003472 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (817)
Q Consensus 355 ~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~ 434 (817)
+.+.+++|+|+.+.. ..|+++++++|. |+||.||+ +||||++|+|+.++||+ ||+|++|+++|++++.+
T Consensus 6 ~~~~~~~~~~~~~~~----~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~ai~~q~~~~~~ 74 (422)
T PRK05630 6 EFDHRHIWHPYAAPG----VRNRLVTSTDGV--FLTLEDGS----TVIDAMSSWWSAAHGHG-HPRLKAAAHKQIDTMSH 74 (422)
T ss_pred hccccccccCcccCC----CCCeeEEeceee--EEEECCCC----EEEEcchhHHHhcCCCC-CHHHHHHHHHHHHhCCC
Confidence 345567888876522 357899988775 59999999 99999999999999999 99999999999999887
Q ss_pred cCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcC
Q 003472 435 VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKG 514 (817)
Q Consensus 435 ~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~g 514 (817)
..+...++++..+|+++|++.+|.+ +++|+|++|||||||+|||+| |+|+..+|. ++|++||+|++
T Consensus 75 ~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AlklA-r~~~~~~g~------------~~r~~ii~~~~ 140 (422)
T PRK05630 75 VMFGGLTHEPAIKLTRKLLNLTDNG-LDHVFYSDSGSVSVEVAIKMA-LQYSKGQGH------------PERTRLLTWRS 140 (422)
T ss_pred cccCCcCCHHHHHHHHHHHhhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEECC
Confidence 7654567999999999999988754 689999999999999999999 788754443 56889999999
Q ss_pred CccCCccccccccCCC-CCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCc
Q 003472 515 SYHGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (817)
Q Consensus 515 syHG~t~galslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~ 593 (817)
+|||+|.+++++++.. .++.. | ++.+ ++..++|.|.... .+++
T Consensus 141 ~yHG~t~~als~~~~~~~~~~~----~----~~~~--------~~~~~~p~~~~~~--------~~~~------------ 184 (422)
T PRK05630 141 GYHGDTFAAMSVCDPEGGMHSL----W----KGTL--------PEQIFAPAPPVRG--------SSPQ------------ 184 (422)
T ss_pred CcCCccHHHhccCCCccccccc----c----cccC--------CCCeEcCCCcccC--------CChH------------
Confidence 9999999999998743 23321 1 1110 1223344442110 0011
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc
Q 003472 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (817)
Q Consensus 594 ~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~ 673 (817)
+ ...+.+.+++.++ +++||||+||++||+||+++||++|+++||++|++||++||+|||||||||||++|
T Consensus 185 -~-~~~~~~~~~~~~~--------~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~ 254 (422)
T PRK05630 185 -E-ISEYLRSLELLID--------ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELF 254 (422)
T ss_pred -H-HHHHHHHHHHHHh--------hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhh
Confidence 1 2234566666653 47999999995599999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHH
Q 003472 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (817)
Q Consensus 674 a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~ 753 (817)
+++++||+|||+|+||+|||||+|+||+++++++++.+........+.|++||+|||++||+++++|++++++++.+++
T Consensus 255 a~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~- 333 (422)
T PRK05630 255 ATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQV- 333 (422)
T ss_pred HHHhcCCCCCeeeeechhhcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHH-
Confidence 9999999999999999999999999999999999998854211134679999999999999999999999885554544
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 754 PERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 754 ~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.++++|++.+.. +.++|.|.+|||+|+|++|||.++. ....+...++++|++
T Consensus 334 ---~~~g~~l~~~L~~-l~~~~~v~~vRg~Gl~~~ie~~~~~------~~~~~~~~~~~~Gl~ 386 (422)
T PRK05630 334 ---KRIEAELIAGLSP-LAHLPGVADVRVLGAIGVVEMEQPV------DMEEATQAAVDHGVW 386 (422)
T ss_pred ---HHHHHHHHHHHHH-hhcCCCeeeeeccccEEEEEECCcc------cHHHHHHHHHHCCeE
Confidence 4555555555554 4568999999999999999997541 245788899999985
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-68 Score=601.94 Aligned_cols=382 Identities=28% Similarity=0.457 Sum_probs=308.5
Q ss_pred hhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhcccc
Q 003472 356 RAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV 435 (817)
Q Consensus 356 ~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~ 435 (817)
.+.+++|+||.+... ..++.++++++|. |+||.||+ +||||++|+|+.++||+ ||+|++|+++|++++.+.
T Consensus 9 ~~~~~~~~~~~~~~~--~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~ 79 (429)
T PRK06173 9 LDRQHIWHPYSSVTD--PIPVYPVERADGV--MITLKDGR----RLIDGMSSWWAALHGYN-HPRLNAAATNQLAKMSHI 79 (429)
T ss_pred hhhcccccccccccc--cCCCceEEeceee--EEEcCCCC----EEEEccchHHhccCCCC-CHHHHHHHHHHHHhcCCc
Confidence 455678998876532 1223568887775 59999999 99999999999999999 999999999999998876
Q ss_pred CCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCC
Q 003472 436 MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS 515 (817)
Q Consensus 436 ~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gs 515 (817)
.+..+.+++..+|+++|++.+|.+ +++|+|++|||||||+|||+| |.|+..+|. ++|++||+|+++
T Consensus 80 ~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~------------~~r~~ii~~~~~ 145 (429)
T PRK06173 80 MFGGFTHEPAVELAQKLLEILPPS-LNKIFFADSGSVAVEVAMKMA-LQYQQAKGE------------VQRTKFATIRSG 145 (429)
T ss_pred cccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCCchHHHHHHHHHH-HHHHHHhCC------------CCCcEEEEECCC
Confidence 654567999999999999988754 789999999999999999999 788765543 568899999999
Q ss_pred ccCCccccccccCCC-CCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCch
Q 003472 516 YHGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (817)
Q Consensus 516 yHG~t~galslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~ 594 (817)
|||+|.+++++|+.. .++.. + ++. .+++.+++.|+.. +. .
T Consensus 146 yHG~t~~a~s~~~~~~~~~~~-----~---~~~--------~~~~~~~~~p~~~-----------~~------------~ 186 (429)
T PRK06173 146 YHGDTWHAMSVCDPVTGMHGL-----F---NHS--------LPVQYFLPQPSIK-----------FG------------E 186 (429)
T ss_pred cCCcchhhhccCCCchhhhhc-----c---ccc--------CCCCeEeCCCCcc-----------cc------------h
Confidence 999999999998743 23321 1 111 0123345555321 10 1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch
Q 003472 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (817)
Q Consensus 595 ~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a 674 (817)
.....+++.+++.|+. .++++||||+||++||+||+++||++|+++|+++|++||++||+|||||||||||++|+
T Consensus 187 ~~~~~~l~~l~~~i~~-----~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a 261 (429)
T PRK06173 187 EWNDEAIEPLQDLLEQ-----KGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFA 261 (429)
T ss_pred hHHHHHHHHHHHHHHh-----CCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchH
Confidence 1223345778888863 45789999999955999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHH
Q 003472 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (817)
Q Consensus 675 ~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~ 754 (817)
++++|++|||+|+||+|||||+|+|++++++++++.+... ....+.|++||++||++||+|+++|++++++++.+++
T Consensus 262 ~~~~gv~PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~~-~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~-- 338 (429)
T PRK06173 262 LEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSG-EAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNI-- 338 (429)
T ss_pred HHhcCCCCCEEEeehhhhCCccccceEEecHHHHHHHhcC-CCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHH--
Confidence 9999999999999999999999999999999999988532 1234679999999999999999999999885555554
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 755 ERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 755 ~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.++++|+++|.++ .++|.|.+|||.|+|++|+|.+. .....+...++++||+
T Consensus 339 --~~~g~~l~~~L~~~-~~~~~v~~vRg~Gl~~~iel~~~------~~~~~i~~~l~e~Gi~ 391 (429)
T PRK06173 339 --QRIEAQLKQELAPA-AEFDSVAEVRVLGAIGVVEMKEP------VNMATLQPRFVEHGIW 391 (429)
T ss_pred --HHHHHHHHHHHHHh-hcCCCeeeeeccceEEEEEeCCc------ccHHHHHHHHHHCCeE
Confidence 45555555555543 56888999999999999999754 2356788999999985
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-68 Score=601.85 Aligned_cols=349 Identities=22% Similarity=0.283 Sum_probs=291.1
Q ss_pred eEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhh
Q 003472 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (817)
Q Consensus 376 p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (817)
++++.++.| +|+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+.+. ...+++..+||++|++.
T Consensus 58 ~~~~~~~~g--~~l~D~dG~----~ylD~~~g~~~~~lGh~-hp~v~~Av~~ql~~l~~~~~-~~~~~~~~~lAe~L~~~ 129 (442)
T TIGR03372 58 AVEWQAGGL--NTLIDTQGN----EFIDCLGGFGIFNVGHR-NPNVIAAVENQLAKQPLHSQ-ELLDPLRALLAKTLAAL 129 (442)
T ss_pred eeEEEeCCe--eEEEECCCC----EEEECCccHHhhhcCCC-CHHHHHHHHHHHHhCCCccc-ccCCHHHHHHHHHHHHh
Confidence 344555444 569999999 99999999999999999 99999999999999876542 35689999999999998
Q ss_pred cCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCc
Q 003472 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (817)
Q Consensus 456 ~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~ 535 (817)
+|.+ +++|+|+||||||||+|||+| |.|+.. .+|.+||+++++|||+|.+++++|+.+.++.+
T Consensus 130 ~p~~-~~~v~f~~SGsEA~e~AlklA-r~~t~~---------------~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~ 192 (442)
T TIGR03372 130 TPGK-LKYSFFCNSGTESVEAALKLA-KAYQSP---------------RGKFTFIAASGAFHGKSLGALSATAKPAFRKP 192 (442)
T ss_pred CCCC-cCEEEEeCCchHHHHHHHHHH-HHHHhh---------------cCCcEEEEECCCccCCCHHHhhccCCcccCCC
Confidence 8754 578999999999999999999 788753 24679999999999999999999986655432
Q ss_pred CCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCC
Q 003472 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (817)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~ 615 (817)
+++. .+++.++| |+|. +.+++.+++.. .
T Consensus 193 --------~~p~--------~~~~~~~p----------------~~d~------------------~~~~~~l~~~~--~ 220 (442)
T TIGR03372 193 --------FMPL--------LPGFHHVA----------------FGDI------------------EAMLKALNECK--K 220 (442)
T ss_pred --------CCCC--------CCCCEEeC----------------CCCH------------------HHHHHHHHHHh--c
Confidence 1111 12233443 3442 12223332210 2
Q ss_pred CCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCCC
Q 003472 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (817)
Q Consensus 616 ~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggGy 695 (817)
+++++||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||+||+++++||+|||+|+||+|||||
T Consensus 221 ~~~~vAavIvEpv-~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lg~G~ 299 (442)
T TIGR03372 221 TGDDVAAIILEPI-QGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCLAKALGGGV 299 (442)
T ss_pred CCCcEEEEEEeCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeeeehhhhcCCc
Confidence 4578999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 696 ~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
+|+||+++++++++.+.. .++.|++||+|||++||||+|+|+++++ +++.++++.++++|+++|.++..++|
T Consensus 300 ~Pigavv~~~~i~~~~~~----~~~~~~~T~~gnp~~~Aaa~a~L~~i~~----~~l~~~~~~~G~~l~~~L~~l~~~~~ 371 (442)
T TIGR03372 300 MPIGATIATEAVFSVLFD----NPFLHTTTFGGNPLACAAALATINELLE----KNLPAQAAIKGDFLLDGFQQLAAEYP 371 (442)
T ss_pred ccceEEEecHHHHHhhhc----cCccccCCCCCCHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999998843 2457999999999999999999999988 45666677778888888888778898
Q ss_pred -CcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 776 -TVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 776 -~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.|++|||.|+|++|||.++ +....+...++++||+
T Consensus 372 ~~i~~vRG~Gl~~giel~~~------~~~~~i~~~l~~~Gvl 407 (442)
T TIGR03372 372 DLIIEARGKGLLMAIEFRDN------EIGYAFAKELFQQNIL 407 (442)
T ss_pred CceEEEecceEEEEEEeCCh------HHHHHHHHHHHHCCcE
Confidence 7899999999999999876 3567788999999985
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=605.22 Aligned_cols=368 Identities=19% Similarity=0.211 Sum_probs=296.9
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|+++..+.....+.++...+|+++|++
T Consensus 45 ~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~ 117 (464)
T PRK06938 45 IPLALKRARGI--YVEDVEGR----QFIDCLAGAGTLALGHN-HPVVIEAIQQVLADELPLHTLDLTTPVKDQFVQDLFA 117 (464)
T ss_pred CCceEEecccc--EEEeCCCC----EEEEccCCccccccCCC-CHHHHHHHHHHHHhhhcccccccCCHHHHHHHHHHHH
Confidence 36788888886 59999999 99999999999999999 9999999999997543222224678999999999999
Q ss_pred hcCCCCc--ceEEEe-CChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCC
Q 003472 455 GVGKGWA--SRAYFS-DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (817)
Q Consensus 455 ~~~~~~~--~~v~f~-~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~ 531 (817)
.+|.+.. ++++|+ ||||||||+|||+| |.+|+ |++||+|+++|||+|.+++++++...
T Consensus 118 ~~p~~~~~~~~v~f~~~SGSEAve~AlklA-r~~tg------------------r~~ii~~~~~yHG~t~~als~t~~~~ 178 (464)
T PRK06938 118 SLPEAFAREAKIQFCGPTGTDAVEAALKLV-KTATG------------------RSTVLSFQGGYHGMSQGALSLMGNLG 178 (464)
T ss_pred hCcccccccceEEEeCCCcHHHHHHHHHHH-HHhhC------------------CCeEEEECCccCCccHHHHhhcCCcc
Confidence 8875311 378776 89999999999999 77765 45999999999999999999998654
Q ss_pred CCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcC
Q 003472 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (817)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (817)
++.. +++. .+++.++++|+.+++. |+. ..++....+.+.+++.+++.
T Consensus 179 ~~~~--------~~~~--------~~~~~~~~~p~~~~~~--------~~~---------~~~~~~~~~~~~l~~~i~~~ 225 (464)
T PRK06938 179 PKKP--------LGAL--------LPGVQFLPYPYDYRCP--------FGL---------GGEAGVRANLHYLENLLDDP 225 (464)
T ss_pred cccc--------CCCC--------CCCcEEeCCCcccccc--------ccC---------chhhHHHHHHHHHHHHHHhh
Confidence 4432 1111 1234566767554321 111 01222334567788888642
Q ss_pred CCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeeccccc
Q 003472 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLL 691 (817)
Q Consensus 612 ~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~L 691 (817)
. .+.++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||++|+++++||+|||+|+||+|
T Consensus 226 ~--~~~~~iAAvI~EPi-qg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gKgl 302 (464)
T PRK06938 226 E--SGVVLPAAVILEVV-QGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAI 302 (464)
T ss_pred c--cCCCceEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEeeccc
Confidence 0 13358999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHH
Q 003472 692 TGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQI 771 (817)
Q Consensus 692 ggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l 771 (817)
||| +|+||+++++++ +.+.. ..|++||+|||++||||+|+|+++++ +++.++++.++++|+++|.++.
T Consensus 303 ggG-~PlsAv~~~~~~-~~~~~------~~~~~T~~gnpla~Aaa~a~L~~l~~----~~l~~~~~~~G~~l~~~L~~l~ 370 (464)
T PRK06938 303 GGS-LPLAVVVYREWL-DTWQP------GAHAGTFRGNQMAMAAGSATLRYIKE----HRLAEHAAAMGERLREHLRQLQ 370 (464)
T ss_pred cCC-CceEEEeehhHh-hccCC------CCCCCCCCcCHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHH
Confidence 999 899999999985 66632 25999999999999999999999988 5666777778888888888887
Q ss_pred HcCCCcceEEeeeeEEEEEEecCCCCC--------CcchHHHHHHHHHHcCCC
Q 003472 772 SSHRTVQRVVALGTLCAIELQAAGCNA--------GYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 772 ~~~p~V~~VrG~Glm~gIel~~~~~~~--------~~~~~~~~~~~~l~~Gv~ 816 (817)
++||.|++|||.|+|++|||+++.... .......+...|+++|++
T Consensus 371 ~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll 423 (464)
T PRK06938 371 RDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLI 423 (464)
T ss_pred HhCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCeE
Confidence 889999999999999999998653221 113456788999999975
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-67 Score=599.76 Aligned_cols=392 Identities=22% Similarity=0.339 Sum_probs=311.7
Q ss_pred CcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCC
Q 003472 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP 438 (817)
Q Consensus 359 ~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~ 438 (817)
...|+|+.+...+. ..|+++++++|. |+||.||+ +||||.+|+|+.++||+ ||+|++|+++|++++.+....
T Consensus 13 ~~~~~~~~~~~~~~-~~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~l~~~~~~ 84 (442)
T PRK13360 13 SAFWMPFTANRQFK-KAPRLLVAAKGM--YYTTHDGR----RVLDGTAGLWCVNAGHG-RPEIVEAVRAQAGELDYAPAF 84 (442)
T ss_pred cccccCcccccccc-CCCceEEeeeee--EEEeCCCC----EEEECchhHHHhccCCC-CHHHHHHHHHHHHhCCCcccC
Confidence 44688877654332 357889888885 59999999 99999999999999999 999999999999998776544
Q ss_pred CCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccC
Q 003472 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (817)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG 518 (817)
...+++..+|+++|++.+|.+ +++|+|+||||||||+|||+| |.|++.+|. ++|.+||+|+++|||
T Consensus 85 ~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~AlklA-r~~~~~~g~------------~~r~~ii~~~~~yHG 150 (442)
T PRK13360 85 QMGHPKAFELANRIAEIAPGG-LNHVFFTNSGSESVDTALKIA-LAYHRARGE------------GSRTRLIGRERGYHG 150 (442)
T ss_pred CcCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEEcCCcCC
Confidence 567999999999999998754 689999999999999999999 778755432 457899999999999
Q ss_pred CccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCch-hhhcccccccccccCcchhhhhccCchhHH
Q 003472 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEW-LYSKIVEHKDITFCSRDEIFYEERDSSDLA 597 (817)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~-~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~ 597 (817)
+|.+++++++...++.. +++. .+++.++|.|+. +++ +|.. +.+...
T Consensus 151 ~t~gals~tg~~~~~~~--------~~~~--------~~~~~~~p~~~~~~~~--------~~~~---------~~~~~~ 197 (442)
T PRK13360 151 VGFGGISVGGIVPNRKA--------FGAL--------LPGVDHLPHTLDLARN--------AFSK---------GQPEHG 197 (442)
T ss_pred ccHhhhhccCChhhhhc--------cCCC--------CCCCEEeCCCchhhcc--------ccCC---------ChHHHH
Confidence 99999999987655442 1111 112334554431 110 0111 012233
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhh
Q 003472 598 SIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677 (817)
Q Consensus 598 ~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~ 677 (817)
..+.+.+|+.++. .+++++||||+||| ||++|+++||++||++||++|++||++||+|||||||||||++|++++
T Consensus 198 ~~~~~~le~~l~~----~~~~~~aavivEpi-~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~ 272 (442)
T PRK13360 198 AELADELERLVTL----HDASTIAAVIVEPV-AGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQY 272 (442)
T ss_pred HHHHHHHHHHHHh----cCCCcEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhh
Confidence 3456778888864 34578999999998 999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCc-cceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHH
Q 003472 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (817)
Q Consensus 678 ~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~-~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~ 756 (817)
+||+|||+|+||+|||||+|+||+++++++++.+..... ...+.|++||++||++||+++++|++++++ ++.+++
T Consensus 273 ~gv~PDivt~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~----~l~~~~ 348 (442)
T PRK13360 273 FGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYERE----GLLTRA 348 (442)
T ss_pred cCCCCceeeeeeccccCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhC----CHHHHH
Confidence 999999999999999999999999999999998854321 123569999999999999999999999884 455555
Q ss_pred HHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 757 RILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 757 ~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.++++|++.+.++ .++|.|.+|||.|+|++++|+... .........+..+++++||+
T Consensus 349 ~~~g~~l~~~l~~l-~~~~~v~~vrG~Gl~~~~~l~~~~-~~~~~~~~~~~~~l~~~Gvl 406 (442)
T PRK13360 349 ARLAPYWEDALHSL-RDAPHVIDIRNLGLVGAVELAPRD-GKPGKRAYEVFLKCFEKGLM 406 (442)
T ss_pred HHHHHHHHHHHHHh-hcCCCeeeeeccceEEEEEEecCC-CCcchhHHHHHHHHHHCCcE
Confidence 66666666655544 568899999999999999998642 11123455677889999985
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-67 Score=598.89 Aligned_cols=380 Identities=26% Similarity=0.396 Sum_probs=306.1
Q ss_pred hcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC
Q 003472 357 AGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM 436 (817)
Q Consensus 357 ~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~ 436 (817)
+.+++|+|++++.. ..+|.++++++|. ++||.||| +||||++|+|++++||+ ||+|++|+++|++++.+..
T Consensus 9 ~~~~~~~~~~~~~~--~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~~~~~ 79 (428)
T PRK07986 9 DQRHIWHPYTSMTS--PLPVYPVVSAEGC--ELILADGR----RLVDGMSSWWAAIHGYN-HPQLNAAMKSQIDAMSHVM 79 (428)
T ss_pred cccccccCCccccc--CCCCeeEEeeeee--EEEeCCCC----EEEEcchhHHhhcCCCC-CHHHHHHHHHHHhhcCCcc
Confidence 44668999877643 1245788888885 59999999 99999999999999999 9999999999999988766
Q ss_pred CCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCc
Q 003472 437 FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSY 516 (817)
Q Consensus 437 ~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsy 516 (817)
+....+++..+|+++|++.+|.+ +++|+|+||||||||+|||+| |+|+..+| .+|++||+|+++|
T Consensus 80 ~~~~~~~~~~~la~~L~~~~p~~-~~~v~f~~SGsEAve~AlklA-r~~~~~~g-------------~~r~kii~~~~~y 144 (428)
T PRK07986 80 FGGITHPPAIELCRKLVAMTPQP-LECVFLADSGSVAVEVAMKMA-LQYWQAKG-------------EPRQRFLTLRHGY 144 (428)
T ss_pred ccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcC-------------CCCcEEEEECCCc
Confidence 44567999999999999998754 689999999999999999999 77764432 3478999999999
Q ss_pred cCCccccccccCCCC-CCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchh
Q 003472 517 HGDTLGAMEAQAPSP-YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595 (817)
Q Consensus 517 HG~t~galslt~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~ 595 (817)
||+|.+++++++... ++.. |. +. .+++.+++.|+... . ++
T Consensus 145 HG~t~~a~s~~~~~~~~~~~-----~~---~~--------~~~~~~~~~p~~~~-----------~------------~~ 185 (428)
T PRK07986 145 HGDTFGAMSVCDPDNSMHSL-----YK---GY--------LPENLFAPAPQSRF-----------D------------GE 185 (428)
T ss_pred CCCcHhhhcccCCchhhhhc-----cC---CC--------CCCCEEECCCCccc-----------c------------hh
Confidence 999999999987432 3321 11 10 12334455553210 0 00
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchh
Q 003472 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675 (817)
Q Consensus 596 ~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~ 675 (817)
......+.+++.|++ .++++||||+||++||+||+++|+++||++|+++|++||++||+|||||||||+|++|++
T Consensus 186 ~~~~d~~~l~~~l~~-----~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~ 260 (428)
T PRK07986 186 WDERDIAPFARLMAA-----HRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFAC 260 (428)
T ss_pred hHHHHHHHHHHHHHh-----CCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeee
Confidence 111123567777763 357899999999659999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHH
Q 003472 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (817)
Q Consensus 676 e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~ 755 (817)
+++||+|||+|+||+|||||+|+||+++++++++.+.... ...+.|++||+|||++|||++++|++++++++ .++
T Consensus 261 ~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~-~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~----~~~ 335 (428)
T PRK07986 261 EHAGIAPDILCLGKALTGGTMTLSATLTTREVAETISNGE-AGCFMHGPTFMGNPLACAVANASLSLLESGDW----QQQ 335 (428)
T ss_pred cccCCCCCEEEechhhhCCcccCcchhchHHHHHHhhcCC-CCccccCCCCCcCHHHHHHHHHHHHHHHhCCH----HHH
Confidence 9999999999999999999999999999999999986432 12356999999999999999999999998544 455
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 756 RRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 756 ~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++.++++|++.+.++ .++|.|++|||+|+|+++|+.++. ....+...++++|++
T Consensus 336 ~~~~g~~l~~~l~~l-~~~~~i~~vRg~Gl~~~ve~~~~~------~~~~~~~~l~~~Gl~ 389 (428)
T PRK07986 336 VAAIEAQLREELAPL-RDAPMVADVRVLGAIGVVETTRPV------NMAALQRFFVEQGVW 389 (428)
T ss_pred HHHHHHHHHHHHHHH-hcCCCEEeEeccceEEEEEeCCcc------cHHHHHHHHHHCCcE
Confidence 555566666665554 468999999999999999997652 356788999999985
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-67 Score=599.38 Aligned_cols=393 Identities=21% Similarity=0.333 Sum_probs=314.4
Q ss_pred cCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCC
Q 003472 358 GELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF 437 (817)
Q Consensus 358 ~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~ 437 (817)
...+|+||+++..+. ..|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+...
T Consensus 15 ~~~~~~~~~~~~~~~-~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~l~~~~~ 86 (445)
T PRK09221 15 LDAHWMPFTANRQFK-AAPRLLVSAEGM--YYTDADGR----KILDGTAGLWCCNAGHG-RPEIVEAVARQAATLDYAPA 86 (445)
T ss_pred hhhcccCcccccccC-CCCceEEecccc--EEEeCCCC----EEEEccccHhhccCCCC-CHHHHHHHHHHHHhccCccc
Confidence 455799987764432 357889998886 59999999 99999999999999999 99999999999999877665
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCcc
Q 003472 438 PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYH 517 (817)
Q Consensus 438 ~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyH 517 (817)
..+.+++..+|+++|++.+|.+ +++|+|+||||||||+|||+| |.|++.+|. ++|.+||+|+++||
T Consensus 87 ~~~~~~~~~~la~~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~------------~~r~~ii~~~~~yH 152 (445)
T PRK09221 87 FQMGHPLAFELAERLAELAPGG-LDHVFFTNSGSESVDTALKIA-LAYHRARGQ------------GTRTRLIGRERGYH 152 (445)
T ss_pred cccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEECCCcC
Confidence 4567999999999999998754 689999999999999999999 788765443 45789999999999
Q ss_pred CCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCc-hhhhcccccccccccCcchhhhhccCchhH
Q 003472 518 GDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDL 596 (817)
Q Consensus 518 G~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~-~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~ 596 (817)
|+|.+++++++.+.++.. | ++. .+++.+++.|+ .+++. +.. ..+..
T Consensus 153 G~t~gals~~~~~~~~~~-----~---~~~--------~~~~~~~~~~~~~~~~~--------~~~---------~~~~~ 199 (445)
T PRK09221 153 GVGFGGISVGGIVNNRKM-----F---GGL--------LPGVDHLPHTLDLPENA--------FSK---------GQPEH 199 (445)
T ss_pred ccchhhhccCCChhhhhc-----c---CCC--------CCCCeEeCCCccccccc--------cCC---------ChHHH
Confidence 999999999986654432 1 111 12334455553 22110 110 01122
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhh
Q 003472 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676 (817)
Q Consensus 597 ~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e 676 (817)
...+.+.+++.++. .+.+++||||+||| ||++|+++||++||++|+++|++||++||+|||||||||||++|+++
T Consensus 200 ~~~~~~~l~~~i~~----~~~~~iAavi~Epv-~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~ 274 (445)
T PRK09221 200 GAELADDLERLVAL----HDASTIAAVIVEPM-AGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAE 274 (445)
T ss_pred HHHHHHHHHHHHHh----cCCCcEEEEEEecc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHH
Confidence 33455678888864 23578999999998 99999999999999999999999999999999999999999999999
Q ss_pred hcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCC-ccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHH
Q 003472 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (817)
Q Consensus 677 ~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~-~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~ 755 (817)
++|++|||+|+||+|||||+|+|++++++++++.+.... ....+.|++||++||++||+|+++|++++++ ++.++
T Consensus 275 ~~gv~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~----~l~~~ 350 (445)
T PRK09221 275 RFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREE----DLFER 350 (445)
T ss_pred hcCCCCCEEEeccccccCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhc----cHHHH
Confidence 999999999999999999999999999999999885421 1124569999999999999999999999884 45566
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 756 RRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 756 ~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++.++++|++++.++ .++|.|.+|||.|+|++++|++.... .......+.+.++++||+
T Consensus 351 ~~~~g~~l~~~l~~l-~~~~~v~~vrg~Gl~~~v~~~~~~~~-~~~~~~~~~~~~~~~Gv~ 409 (445)
T PRK09221 351 AAELAPYFEDAVHSL-KGLPHVIDIRNIGLVAGIELAPRPGA-PGARGYEAFMKCFEKGLL 409 (445)
T ss_pred HHHHHHHHHHHHHhh-ccCCCEEEEecCceEEEEEEeccccc-ccchHHHHHHHHHHCCeE
Confidence 666777777665554 56899999999999999999864211 112345678899999985
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-67 Score=600.99 Aligned_cols=351 Identities=23% Similarity=0.280 Sum_probs=295.3
Q ss_pred CCeEEEEeecC-ceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHH
Q 003472 374 EAVTVIDSRCG-ENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELL 452 (817)
Q Consensus 374 ~~p~vi~~~~G-~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L 452 (817)
..|+++.+++| . |+||.||+ +||||++|+|+.++||+ ||+|++|+++|++++.+.+. ...++...+|+++|
T Consensus 62 ~~~~~~~~~~G~~--~l~D~dG~----~ylD~~~g~~~~~lGH~-~p~v~~Ai~~ql~~l~~~~~-~~~~~~~~~lae~L 133 (459)
T PRK11522 62 DYGAVEWQAGGLN--TLVDTQGQ----EFIDCLGGFGIFNVGHR-NPVVVSAVQNQLAKQPLHSQ-ELLDPLRAMLAKTL 133 (459)
T ss_pred CCCeeEEeccCeE--EEEECCCC----EEEECCcCHHhhhcCCC-CHHHHHHHHHHHhhCccccc-ccCCHHHHHHHHHH
Confidence 34678888888 6 49999999 99999999999999999 99999999999999876542 45689999999999
Q ss_pred HhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCC
Q 003472 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (817)
Q Consensus 453 ~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~ 532 (817)
++.+|.+ +++|+|+||||||||+|||+| |.||+++ +|.+||+++++|||+|.+++++++...+
T Consensus 134 ~~~~p~~-~~~v~f~~SGsEAve~AlklA-r~~t~~~---------------gr~~ii~~~~~yHG~t~~~ls~~~~~~~ 196 (459)
T PRK11522 134 AALTPGK-LKYSFFCNSGTESVEAALKLA-KAYQSPR---------------GKFTFIATSGAFHGKSLGALSATAKSTF 196 (459)
T ss_pred HHhCCCC-CCEEEEeCCchHHHHHHHHHH-HHHhccC---------------CCcEEEEecCCCCCCcHHHhhhcCCccc
Confidence 9988754 689999999999999999999 8898653 3579999999999999999999986655
Q ss_pred CCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCC
Q 003472 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (817)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (817)
+.+ +++.. +++.++ +|||. +.+++.|++..
T Consensus 197 ~~~--------~~~~~--------~~~~~~----------------~~~d~------------------~~l~~~l~~~~ 226 (459)
T PRK11522 197 RKP--------FMPLL--------PGFRHV----------------PFGNI------------------EAMRTALSECK 226 (459)
T ss_pred ccC--------CCCCC--------CCCccc----------------CCCCH------------------HHHHHHHHHhh
Confidence 542 11110 112222 24543 23444444210
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccC
Q 003472 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (817)
Q Consensus 613 ~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lg 692 (817)
.+++++||||+||| ||++|+++||++||++|+++|++||++||+|||||||||||++|+++++||+|||+|+||+||
T Consensus 227 --~~~~~iAavIvEpv-~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lg 303 (459)
T PRK11522 227 --KTGDDVAAVILEPI-QGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALG 303 (459)
T ss_pred --ccCCcEEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCCEEEechhhh
Confidence 23578999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
|||+|+||+++++++++.+.. .++.|++||+|||++||||+|+|++++++ ++.++++.++++|+++|.++.+
T Consensus 304 gG~~Pigav~~~~~i~~~~~~----~~~~~~~T~~gnp~~~Aaala~L~~i~~~----~l~~~~~~~g~~l~~~L~~l~~ 375 (459)
T PRK11522 304 GGVMPIGATIATEEVFSVLFD----NPFLHTTTFGGNPLACAAALATINVLLEQ----NLPAQAEQKGDYLLDGFRQLAR 375 (459)
T ss_pred CCCccceeEEEcHHHHHHhcc----CCcccCCCCCCCHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998743 24579999999999999999999999984 4556666677777777777777
Q ss_pred cCC-CcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 773 SHR-TVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 773 ~~p-~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++| .|++|||.|+|++|+|.++ +....+...++++||+
T Consensus 376 ~~~~~i~~VrG~Gl~~giel~~~------~~~~~i~~~l~~~Gvl 414 (459)
T PRK11522 376 EYPDLVQEARGKGMLMAIEFVDN------EIGYNFASEMFRQRVL 414 (459)
T ss_pred hCCCceeeEEeceeEEEEEecCc------hHHHHHHHHHHHCCeE
Confidence 898 7899999999999999875 4567788999999985
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-67 Score=560.63 Aligned_cols=337 Identities=31% Similarity=0.450 Sum_probs=288.5
Q ss_pred CCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHH
Q 003472 373 EEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELL 452 (817)
Q Consensus 373 ~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L 452 (817)
...|+++++++|. .+||.+|+ +||||+|+||+..+||+ ||+|.+|+.+|+.+++|+++..++.+ +++|+++|
T Consensus 36 a~~pv~~~~gkg~--kl~D~~g~----EyiD~~ssw~~~~~Gha-npev~ral~~q~~k~~hs~~~~~t~e-av~l~~~l 107 (433)
T KOG1401|consen 36 ARYPVVIESGKGS--KLFDPDGK----EYIDFTSSWAVTILGHA-NPEVARALAEQAKKLGHSSNGYFTLE-AVELEEVL 107 (433)
T ss_pred CCCceeeecceee--eeecCCcc----eeeeeccceeccccCCC-CHHHHHHHHHHHhhheeccCccccHH-HHHHHHHH
Confidence 3467888887775 59999999 99999999999999999 99999999999999999986555555 99999999
Q ss_pred HhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCC
Q 003472 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (817)
Q Consensus 453 ~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~ 532 (817)
.+.+++++.++|+|||||+||||+|||+| |+++..+-. ..+.+||+|+|||||+|+++|++++++.|
T Consensus 108 ~~~~~~~~~~rvff~nsGTeAne~ALK~A-rk~~~~~~~------------~~~t~~Iaf~nsyHG~tlgals~~~~s~y 174 (433)
T KOG1401|consen 108 SAVLGKGSAERVFFCNSGTEANETALKFA-RKFTGKKHP------------EKKTKFIAFENSYHGRTLGALSVTGNSKY 174 (433)
T ss_pred HhcccCCCccEEEEecCCcHHHHHHHHHH-HHhhcccCC------------ccceeEEEEecCcCCcchhHHHhhccccc
Confidence 99998888999999999999999999999 677654310 23578999999999999999999987766
Q ss_pred CCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCC
Q 003472 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (817)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (817)
+-+ ++|- .|+.. +.+|||+ ..+++.++
T Consensus 175 ~~~------------~~p~------------~p~v~--------~~~ynd~------------------t~l~k~~~--- 201 (433)
T KOG1401|consen 175 GLP------------FDPI------------APDVV--------TAEYNDS------------------TALEKLFE--- 201 (433)
T ss_pred CCC------------CCCC------------CCcee--------ecccCCH------------------HHHHHHHH---
Confidence 643 2221 11111 1236664 67888888
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccC
Q 003472 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (817)
Q Consensus 613 ~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lg 692 (817)
.+.++|||||+||| ||+||+++++|+|+..||++|+++|++||+|||||||||+|..|++++++++|||.|+||.||
T Consensus 202 --~h~~~IaAVIvEPi-qGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t~aK~L~ 278 (433)
T KOG1401|consen 202 --SHKGEIAAVIVEPI-QGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPDITTVAKPLG 278 (433)
T ss_pred --hCCCceEEEEEecc-cCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCcceeehhhcc
Confidence 46788999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
|| +|+||+++++++++.+..+. .+.||+||+|||++|++|..+|+.+.+++.+.+ +...+..|++++.+.++
T Consensus 279 gG-lPigA~~v~~kV~~~i~~~~---~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~----vs~~~k~L~~~l~e~~~ 350 (433)
T KOG1401|consen 279 GG-LPIGATGVRDKVAEMISPGD---HLYHGGTFSGNPLACSAGIKVLDELKDPETLKN----VSKIGKELRKLLDEYLK 350 (433)
T ss_pred CC-ceeEEEeehHHHHhhcCCCC---ccccCcccCCChhhhhHHHHHHHHHcCHHHHHH----HHHHHHHHHHHHHHHhc
Confidence 99 99999999999999997654 378999999999999999999999999555555 45566666677788888
Q ss_pred cCCCc-ceEEeeeeEEEEEEecC
Q 003472 773 SHRTV-QRVVALGTLCAIELQAA 794 (817)
Q Consensus 773 ~~p~V-~~VrG~Glm~gIel~~~ 794 (817)
+++.. ...+|+|+++++++..+
T Consensus 351 ~~~~~i~g~~grgl~ig~~~~~p 373 (433)
T KOG1401|consen 351 KTPNSICGGVGRGLVIGFEFEGP 373 (433)
T ss_pred cCCCceeeeeeeEEEEEEEEeec
Confidence 88754 33499999999999776
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=596.20 Aligned_cols=368 Identities=18% Similarity=0.175 Sum_probs=293.2
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|+++..+.....+.++...+||++|++
T Consensus 40 ~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGH~-~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lAe~L~~ 112 (459)
T PRK06931 40 LPLAIAKAQGV--WVTDVEGN----QYLDCLAGAGTLALGHN-HPDVLQSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLS 112 (459)
T ss_pred CCceEEecccc--EEEeCCCC----EEEEcccchhhccCCCC-CHHHHHHHHHHHhhhccccccccCCHHHHHHHHHHHH
Confidence 47788888886 59999999 99999999999999999 9999999999998744322224578999999999999
Q ss_pred hcCCCC--cceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCC
Q 003472 455 GVGKGW--ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (817)
Q Consensus 455 ~~~~~~--~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~ 532 (817)
.+|... ...+||+||||||||+|||+| |+||+| .+||+|+++|||+|.+++++|+...+
T Consensus 113 ~~p~~~~~~~~~f~~~SGsEAve~AlklA-r~~tgr------------------~~Ii~~~~~yHG~t~~als~t~~~~~ 173 (459)
T PRK06931 113 LLPGQGKEYCLQFTGPSGADAVEAAIKLA-KTYTGR------------------SNVISFSGGYHGMTHGALAVTGNLSP 173 (459)
T ss_pred hCCCccccceEEEeCCCcHHHHHHHHHHH-HHhcCC------------------CeEEEECCCcCCccHHHHhhcCCccc
Confidence 887421 123566799999999999999 788654 58999999999999999999986555
Q ss_pred CCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCC
Q 003472 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (817)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (817)
+.+ +.+ ..+++.++++|+.+++. |+.. .++..+.+.+.+++.+++..
T Consensus 174 ~~~--------~~~--------~~~~~~~~~~~~~~~~~--------~~~~---------~~~~~~~~~~~~~~~~~~~~ 220 (459)
T PRK06931 174 KNA--------VNG--------LMPGVQFMPYPHEYRCP--------LGIG---------GEAGVKALTYYFENFIEDVE 220 (459)
T ss_pred ccC--------CCC--------CCCCcEEeCCCcccccc--------ccCC---------chhHHHHHHHHHHHHHHhhh
Confidence 442 111 11345567777665432 2210 01112223344555554210
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccC
Q 003472 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (817)
Q Consensus 613 ~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lg 692 (817)
.++++|||||+||| ||+||+++||++||++||++|++||+|||+|||||||||||++|+++++||+|||+|+||+||
T Consensus 221 --~~~~~iAAvI~EPi-qg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~gK~l~ 297 (459)
T PRK06931 221 --SGVRKPAAVILEAI-QGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVMSKAVG 297 (459)
T ss_pred --cCCCceEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEeccccc
Confidence 24578999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
|| +|+|++++++++ +.+.. ..|++||+|||++||+|+|+|+++++ +++.++++.++++|+++|.++.+
T Consensus 298 gG-~Pi~av~~~~~~-~~~~~------~~~~~T~~gnpla~aaala~L~~l~~----~~l~~~~~~~G~~l~~~L~~l~~ 365 (459)
T PRK06931 298 GG-LPLAVLGIKKEF-DAWQP------GGHTGTFRGNQLAMATGLTTLKILKE----ENLAQNAAERGEWLKAQLAELQK 365 (459)
T ss_pred CC-cceeeeeeHHHH-hhccC------CCCCCCCCCCHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHHHHH
Confidence 99 799999999874 66632 25999999999999999999999988 45566667777777778888778
Q ss_pred cCCCcceEEeeeeEEEEEEecCCCCC--------CcchHHHHHHHHHHcCCC
Q 003472 773 SHRTVQRVVALGTLCAIELQAAGCNA--------GYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 773 ~~p~V~~VrG~Glm~gIel~~~~~~~--------~~~~~~~~~~~~l~~Gv~ 816 (817)
+||.|++|||.|+|++|||+++.... +.+....+...|+++|++
T Consensus 366 ~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl 417 (459)
T PRK06931 366 RYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFENGLL 417 (459)
T ss_pred hCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHCCcE
Confidence 99999999999999999998653221 123456788899999986
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-66 Score=592.69 Aligned_cols=371 Identities=19% Similarity=0.221 Sum_probs=301.1
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+..+....+++..+|+++|++
T Consensus 35 ~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~ 107 (457)
T PRK05639 35 FPLVPKRGFGA--LIEDVDGN----VFIDFLAGAAAASTGYS-HPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAE 107 (457)
T ss_pred CCceEEeeecC--EEEeCCCC----EEEECCcCHHhhccCCC-CHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHh
Confidence 36789998886 59999999 99999999999999999 9999999999999987664433457899999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCC-CCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~-~~~ 533 (817)
.+|.+ +++|+|+||||||||+|||+| |++|++ ++||+|+++|||+|.+++++++.. .++
T Consensus 108 ~~p~~-~~~v~f~~SGsEA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~a~s~~~~~~~~~ 167 (457)
T PRK05639 108 ISPIE-NPKVLFGLSGSDAVDMAIKVS-KFSTRR------------------PWILAFIGAYHGQTLGATSVAAFQSSQK 167 (457)
T ss_pred hCCCC-cCEEEEeCchHHHHHHHHHHH-HHhcCC------------------CeEEEECCCcCCccHHHHHHcCCCcccc
Confidence 88754 579999999999999999999 787654 589999999999999999998742 232
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
.. +.+ ..+++..+|+|+.+++... +++. .+.+++...+.+.+++.|....
T Consensus 168 ~~--------~~~--------~~~~~~~~p~~~~~~~~~~------~~~~-------~~~~~~~~~~~~~le~~l~~~~- 217 (457)
T PRK05639 168 RG--------FSP--------LMPNVVWIPYPNPYRNPWG------INGY-------EEPDELINRFLDYLENYVFSHV- 217 (457)
T ss_pred cC--------CCC--------CCCCceEeCCCcccccccc------cccc-------CCHHHHHHHHHHHHHHHHHHhh-
Confidence 21 111 1134556777765542110 1110 0122344455677777664210
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
.++++|||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||++|+++++|++|||+|+||+|||
T Consensus 218 -~~~~~iAAvI~EPi-qg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~g 295 (457)
T PRK05639 218 -VPPDEVAALFAEPI-QGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFGKGVAS 295 (457)
T ss_pred -cCCCceEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEEechhhcC
Confidence 24678999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +|+|++++++++++.+ .. .|++||++||++|||++|+|+++++ +++.++++.++++|+++|.++.++
T Consensus 296 G-~pi~av~~~~~i~~~~-~~------~~~~T~~g~p~~~aaa~a~l~~l~~----~~l~~~~~~~g~~l~~~L~~l~~~ 363 (457)
T PRK05639 296 G-MGLSGVIGRKELMDLT-SG------SALLTPAANPVISAAAEATLEIIEE----ENLLKNALKVGEFIKKRLLEMKES 363 (457)
T ss_pred C-CcceeEEehHHHHhhc-CC------CcccCCCcCHHHHHHHHHHHHHHHH----ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9 7999999999999843 21 3679999999999999999999998 455566666777777788887788
Q ss_pred CCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+|.+.+|||+|+|++++|.++....+.+....+...++++|++
T Consensus 364 ~~~~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~ 406 (457)
T PRK05639 364 FEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLI 406 (457)
T ss_pred CCCEEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHHhCCeE
Confidence 9999999999999999998653222334567889999999985
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-66 Score=590.95 Aligned_cols=372 Identities=23% Similarity=0.323 Sum_probs=301.3
Q ss_pred CcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCC
Q 003472 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP 438 (817)
Q Consensus 359 ~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~ 438 (817)
+++|+|+... ..|+++++++|. ++||.||| +||||++ .|+.++||+ ||+|++|+++|++++.+.. .
T Consensus 43 ~~~~~~~~~~-----~~~~~i~~a~G~--~l~D~dG~----~ylD~~g-~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~-~ 108 (459)
T PRK06082 43 EVFLHQAMST-----PCLDVLASAEGI--YIEDVDGK----KYMDFHG-NNVHQLGYG-HPHVIEKVKEQMAKLPFSP-R 108 (459)
T ss_pred HHhcccccCC-----CCCceEEeeeee--EEEECCCC----EEEEccc-HhhcccCCC-CHHHHHHHHHHHHhCCCcc-C
Confidence 3356665432 236789998886 59999999 9999985 599999999 9999999999999987654 2
Q ss_pred CCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccC
Q 003472 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (817)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG 518 (817)
.+.+++..+|+++|++++|.+ +++++|++|||||||+|+|+| |+|+++ .+||+|+++|||
T Consensus 109 ~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~tgr------------------~~ii~~~~~yHG 168 (459)
T PRK06082 109 RFTNETAIECAEKLTEIAGGE-LNRVLFAPGGTSAIGMALKLA-RHITGN------------------FKVVSLWDSFHG 168 (459)
T ss_pred ccCCHHHHHHHHHHHHhCCCC-CCEEEECCCcHHHHHHHHHHH-HHhcCC------------------CEEEEEeCCCcC
Confidence 467899999999999998743 579999999999999999999 788653 589999999999
Q ss_pred CccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHH
Q 003472 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (817)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~ 598 (817)
+|.+++++++.+.++.. +++. .+++.+++.|+.+++ +|++. +.+..
T Consensus 169 ~t~~a~s~~~~~~~~~~--------~~~~--------~~~~~~~~~~~~~~~--------~~~~~----------~~~~~ 214 (459)
T PRK06082 169 ASLDAISVGGEACFRQG--------MGPL--------MAGVERIPPAVSYRG--------AFPDA----------DGSDV 214 (459)
T ss_pred ccHHHHhhcCCcccccC--------CCCC--------CCCCEEeCCCccccc--------ccCCh----------hHHHH
Confidence 99999999987655542 1111 134556666655532 13321 12334
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhc
Q 003472 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (817)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~ 678 (817)
.+.+.+++.+++ .+++||||+||| ||+| +++||++||++||++|++||++||+|||||||||||++|+++++
T Consensus 215 ~~~~~l~~~i~~------~~~vAavIvEPv-~g~g-~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~ 286 (459)
T PRK06082 215 HYADYLEYVIEK------EGGIGAFIAEAV-RNTD-VQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAY 286 (459)
T ss_pred HHHHHHHHHHhc------CCCEEEEEECCc-cCCC-CcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhh
Confidence 456778888863 357999999998 9985 77889999999999999999999999999999999999999999
Q ss_pred CCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHH
Q 003472 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRI 758 (817)
Q Consensus 679 gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~ 758 (817)
||+|||+|+||+|||||+|+|++++++++++.+.. .+.| +||+|||++||||+|+|++++++ ++.++++.
T Consensus 287 gv~PDiv~~gKgl~gG~~P~~av~~~~~i~~~~~~-----~~~~-~T~~gnpl~~aaa~a~L~~l~~~----~l~~~~~~ 356 (459)
T PRK06082 287 GIEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQI-----SLGH-YTHEKSPLGCAAALATIEVIEQE----GLLEKVKA 356 (459)
T ss_pred CCCCCEEEecccccCCCCcceEEEEcHHHHhhccC-----CCCC-CCCCcCHHHHHHHHHHHHHHHhc----CHHHHHHH
Confidence 99999999999999998899999999998866521 2346 89999999999999999999884 45556666
Q ss_pred HHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCC--CCcchHHHHHHHHHHcCCC
Q 003472 759 LRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN--AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 759 lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~--~~~~~~~~~~~~~l~~Gv~ 816 (817)
++++|+++|.++.+++|.|++|||+|+|++|||+++... ...+....+...|+++||+
T Consensus 357 ~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl 416 (459)
T PRK06082 357 DSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLS 416 (459)
T ss_pred HHHHHHHHHHHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHHhCCCE
Confidence 777777777777788999999999999999999865311 1224567888999999985
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=575.98 Aligned_cols=339 Identities=27% Similarity=0.426 Sum_probs=281.0
Q ss_pred EEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcC
Q 003472 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG 457 (817)
Q Consensus 378 vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~ 457 (817)
+|++++|.+ +||.||+ +||||++++|++++||+ ||+|++|+++|++++.+.++....+++..+|+++|.+.+|
T Consensus 1 ~i~~a~G~~--l~d~dG~----~~lD~~~~~~~~~lGh~-~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p 73 (339)
T PF00202_consen 1 FIERAEGAY--LWDVDGR----EYLDFMSGYGSVNLGHN-HPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFP 73 (339)
T ss_dssp EEEEEEBTE--EEETTSE----EEEESSHHHHTTTT-BT--HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSS
T ss_pred CeEEeecCE--EEECCCC----EEEECCCCccceecCCC-ccccchhHHHHhhhcccccccceeccchhhhhhhhhhccc
Confidence 577888865 9999999 99999999999999999 9999999999999998887667889999999999999997
Q ss_pred CCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCC
Q 003472 458 KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537 (817)
Q Consensus 458 ~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~ 537 (817)
.+ +++|+|++||+||||+|||+| |++...++. ++|.+|++|+++|||+|.+++++++.+.++.. .
T Consensus 74 ~~-~~~v~f~~sGseAve~Alkla-~~~~~~~~~------------~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~-~ 138 (339)
T PF00202_consen 74 GG-LDRVFFANSGSEAVEAALKLA-RQYHNKRAY------------TGRRKILAFEGSYHGRTLGALSLTGNPPYRKG-F 138 (339)
T ss_dssp TT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTHH------------HTTTEEEEETTTB-TSSHHHHHHSSSTHHHTT-T
T ss_pred cc-cceeeeccCchHHHHHHHHHh-hcccccccc------------cCCceEEEeeeeeeccCcccccccCCcccccc-c
Confidence 64 889999999999999999999 555444332 56889999999999999999999887766653 1
Q ss_pred CCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 003472 538 QPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (817)
Q Consensus 538 ~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~ 617 (817)
.++ ..++.++|.|+... ......+.+.+++.+.+ ...
T Consensus 139 ~~~---------------~~~~~~~p~~~~~~------------------------~~~~~~~~~~~~~~~~~----~~~ 175 (339)
T PF00202_consen 139 GPL---------------YPGVVFVPFPDPAA------------------------DEEEQACLNALEELIAA----LNA 175 (339)
T ss_dssp CSS---------------STTEEEEETTCHHH------------------------HHHHHHHHHHHHHHHHH----HHG
T ss_pred ccc---------------ccccccccCCccch------------------------hhhHHHHHHHHHHHHHh----hcC
Confidence 111 12334566554431 01112223444444443 346
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCCCCc
Q 003472 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIP 697 (817)
Q Consensus 618 ~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggGy~P 697 (817)
++|||||+||| ||++|++++|++||++|+++|++||++||+|||||||||||++|+++++|++|||+|+||+|+|| +|
T Consensus 176 ~~iaavivEPi-~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~gK~l~gG-~p 253 (339)
T PF00202_consen 176 DEIAAVIVEPI-QGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVTFGKGLGGG-LP 253 (339)
T ss_dssp GGEEEEEEESS-BTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEEEGGGGTT-SS
T ss_pred CcEEEEEEecc-ccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCcccccccchhhh-hh
Confidence 78999999998 99999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred ceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 003472 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (817)
Q Consensus 698 lsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V 777 (817)
+|++++++++++.+... .|++||++||++|++|+++|+++++ +++.++++.++++|+++|.++.++++.|
T Consensus 254 ~sav~~~~~i~~~~~~~------~~~~T~~g~p~~~aaa~~~l~~~~~----~~~~~~~~~~g~~l~~~L~~l~~~~~~i 323 (339)
T PF00202_consen 254 ISAVLGSEEIMEAFQPG------SHGSTFGGNPLSCAAALATLEILEE----EDLLERVRELGERLREGLRELAARYPLI 323 (339)
T ss_dssp EEEEEEEHHHHTTSCTT------SSTCTTTT-HHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred cccccccchhhcccccc------ccccccccchHhhhhhhhHHHhhcc----HHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 99999999999988543 3999999999999999999999998 4556666677777777888777888999
Q ss_pred ceEEeeeeEEEEEEec
Q 003472 778 QRVVALGTLCAIELQA 793 (817)
Q Consensus 778 ~~VrG~Glm~gIel~~ 793 (817)
.+|||.|+|++|||++
T Consensus 324 ~~vrg~Gl~~~ie~~k 339 (339)
T PF00202_consen 324 GEVRGIGLMIGIELVK 339 (339)
T ss_dssp EEEEEETTEEEEEESS
T ss_pred EEEeeeCeEEEEEEEC
Confidence 9999999999999975
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-66 Score=536.94 Aligned_cols=350 Identities=23% Similarity=0.328 Sum_probs=295.9
Q ss_pred eEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhh
Q 003472 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (817)
Q Consensus 376 p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (817)
|+++.+++|.+ +||.+|+ +||||.|++++++-||| ||.|++|+++|++++..++. .+.++...++++.+.++
T Consensus 42 pvvf~ka~g~~--vwD~eGk----~ylDflsaysaVnqGhc-hpki~~aLqeq~~kLtlssr-afYnd~~~~f~~~vt~l 113 (427)
T KOG1402|consen 42 PVVFSKAKGSR--VWDPEGK----EYLDFLSAYSAVNQGHC-HPKIIKALQEQADKLTLSSR-AFYNDVLGEFAEYVTKL 113 (427)
T ss_pred ceEEEecCCcE--EECCCcc----chhhhhhhhhhcccCCC-CHHHHHHHHHHHhHhhhhhH-HHhhhhHHHHHHHHHHh
Confidence 67888888864 9999999 99999999999999999 99999999999999877653 35688999999999999
Q ss_pred cCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCc
Q 003472 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (817)
Q Consensus 456 ~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~ 535 (817)
+| +++|+-.|||+||+|+|+|+||++.+..++. | .++.+|++..++|||+|++++++++.+..
T Consensus 114 f~---~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~i-----p------~nka~il~~~~nFhGrT~~ais~s~d~ds--- 176 (427)
T KOG1402|consen 114 FG---YDKVLPMNTGAEAVETACKLARKWGYRKKNI-----P------KNKAKILSAENNFHGRTLGAISLSTDPDS--- 176 (427)
T ss_pred cC---cceeeecccchhHHHHHHHHHHHHHHhhccC-----C------ccceeEEEecccccCceeeeEEecCCcch---
Confidence 98 6899999999999999999994444544443 1 36789999999999999999999975421
Q ss_pred CCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCC
Q 003472 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (817)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~ 615 (817)
+.++|+|. |.+ +.. ++|+|. +.|+..|+
T Consensus 177 -----~~~fgp~~--P~~-----~~~----------------v~Y~d~------------------eale~~l~------ 204 (427)
T KOG1402|consen 177 -----WDGFGPFL--PGV-----VDK----------------VPYGDA------------------EALEVALK------ 204 (427)
T ss_pred -----hhccCCCC--CCc-----cee----------------eccCCH------------------HHHHHHhc------
Confidence 12344432 110 111 457774 66788876
Q ss_pred CCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCCC
Q 003472 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (817)
Q Consensus 616 ~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggGy 695 (817)
...+||||+||| ||++|+++||++||+++|+||++|+++||+||||||+||||++|+++|.+|+|||+++||+|+||+
T Consensus 205 -~~~vaaFivEPI-QGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~PDivilgKalSGG~ 282 (427)
T KOG1402|consen 205 -SPNVAAFIVEPI-QGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRPDIVILGKALSGGV 282 (427)
T ss_pred -CCCeeEEEeecc-ccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcCCCeEEEeccccCCe
Confidence 368999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 696 ~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
+|+||+++++++|-.+... .||+||+|||++|++|.|+||++++ ++|.++++.+|+.|+.+|.++.++.|
T Consensus 283 ~Pvsavl~~~~im~~~~pg------eHgsTyggNpLg~~vaiAalevi~e----ekL~era~~lG~~l~~~L~~l~~~~p 352 (427)
T KOG1402|consen 283 YPVSAVLADDDIMLNIKPG------EHGSTYGGNPLGCAVAIAALEVIVE----EKLVERAAKLGEILRDQLNKLQKKFP 352 (427)
T ss_pred eeeEEEEecHHHHhccCCC------ccccccCCChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999987443 5999999999999999999999998 78999999999999999999888888
Q ss_pred C-cceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 776 T-VQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 776 ~-V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
. |.+|||+|++.+|++...+ ..+++.-+ .-..+.++|+|
T Consensus 353 ~~v~~VRGrGl~~ai~i~~~~-~~~~~aw~-~cl~lk~~g~L 392 (427)
T KOG1402|consen 353 HVVKEVRGRGLLNAIVINPSK-TSGQDAWD-VCLALKENGLL 392 (427)
T ss_pred chhheeeccceEEEEEecccc-ccchhHHH-HHHcccccccc
Confidence 5 7999999999999998653 22222211 22345566654
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-65 Score=581.66 Aligned_cols=366 Identities=23% Similarity=0.299 Sum_probs=295.6
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. ++||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+..+....++...+|+++|++
T Consensus 38 ~p~~i~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~ 110 (443)
T PRK06058 38 LPVYVARAGGG--IVEDVDGN----RLIDLGSGIAVTSVGNS-APRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLNR 110 (443)
T ss_pred CCceEEeeeee--EEEeCCCC----EEEEcCcchhhhccCCC-CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHH
Confidence 36788888886 59999999 99999999999999999 9999999999999987665444568999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCC-CCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~-~~~ 533 (817)
.+|..+.++++|++|||||||+|||+| |.|+++ .+||+++++|||+|.+++++|+.. .++
T Consensus 111 ~~p~~~~~~v~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~al~~~~~~~~~~ 171 (443)
T PRK06058 111 LTPGDHEKRSALFNSGAEAVENAVKIA-RSYTGR------------------QAVVVFDHAYHGRTNLTMALTAKSMPYK 171 (443)
T ss_pred hCCCCCCCEEEEeCCcHHHHHHHHHHH-HHhhCC------------------CeEEEECCCcCcChHHHHhhcCCCcccc
Confidence 887433469999999999999999999 788654 589999999999999999998743 222
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
.. +++. .+++.+++.|++++ +.. ....+.++....+.+.+++.+
T Consensus 172 ~~--------~~~~--------~~~~~~~~~~~~~~------------~~~---~~~~~~~~~~~~~~~~l~~~~----- 215 (443)
T PRK06058 172 SG--------FGPF--------APEVYRAPMSYPYR------------DPK---GLATDGEEAAARAITVIEKQV----- 215 (443)
T ss_pred cc--------cCCC--------CCCceEcCCCcccc------------ccc---ccccchHHHHHHHHHHHHHhh-----
Confidence 21 1111 12234445444432 110 000011122222334444433
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
.+++|||||+||+ ||+||+++||++||++||++|++||++||+|||||||||||++|+++++|++|||+|+||+|||
T Consensus 216 --~~~~iAavi~EPi-~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~gK~l~~ 292 (443)
T PRK06058 216 --GADNLAAVIIEPI-QGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTAKGIAG 292 (443)
T ss_pred --CCCceEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEcccccC
Confidence 2468999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +|+|++++++++++.+... .|++||+|||++||||+++|+++++ +++.++++.++++|.++|.++.++
T Consensus 293 G-~Pi~av~~~~~i~~~~~~~------~~~~T~~gnpl~~aaa~a~L~~~~~----~~l~~~~~~~g~~l~~~L~~l~~~ 361 (443)
T PRK06058 293 G-LPLSAVTGRAEIMDAPHPG------GLGGTYGGNPVACAAALAAIETIEE----DDLVARARQIEALMTDRLRALAAE 361 (443)
T ss_pred C-CccEEEEEcHHHHhhccCC------CCCCCCCCCHHHHHHHHHHHHHHHH----cCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9 7999999999999988532 4899999999999999999999988 456666677778888888887788
Q ss_pred CCCcceEEeeeeEEEEEEecCCC-CCCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGC-NAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~-~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+|.|++|||.|+|++++|+++.. ..+.+....+...|+++||+
T Consensus 362 ~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~ 405 (443)
T PRK06058 362 DDRIGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHAAGVI 405 (443)
T ss_pred CCcEEeeeccceEEEEEEecCCCCCCcHHHHHHHHHHHHHCCeE
Confidence 99999999999999999987521 12234677889999999985
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=578.49 Aligned_cols=368 Identities=19% Similarity=0.249 Sum_probs=302.8
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+.....+.++...+|+++|++
T Consensus 24 ~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGH~-~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~ 96 (445)
T PRK08593 24 YPLVIDHGYGA--TLTDVDGK----TYIDLLASASSQNVGHA-PPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCE 96 (445)
T ss_pred CCceEEeeeeC--EEEeCCCC----EEEECCccHHhhcCCCC-CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHH
Confidence 36788888886 59999999 99999999999999999 9999999999999988766545679999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCC-CC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP-YT 533 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~-~~ 533 (817)
.+|.++.++|+|+||||||||+|||+| |.+|+| ++||+++++|||+|.+++++++... ++
T Consensus 97 ~~p~~~~~~v~f~~SGseA~e~AiklA-r~~tgr------------------~~ii~~~~~YHG~t~~als~s~~~~~~~ 157 (445)
T PRK08593 97 LAPGDFEKRVTFGLSGSDANDGIIKFA-RAYTGR------------------PYIISFTNAYHGSTYGSLSMSGISLNMR 157 (445)
T ss_pred hCCCCCCCEEEECCchHHHHHHHHHHH-HHhhCC------------------CeEEEECCCcCCCcHHHHhhcCCCcccc
Confidence 987543479999999999999999999 788754 5899999999999999999997532 22
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
.. +++. .+++.++++|+.+++. +.. ...+....+++.+++.+++.
T Consensus 158 ~~--------~~~~--------~~~~~~~~~p~~~~~~--------~~~---------~~~~~~~~~~~~~~~~~~~~-- 202 (445)
T PRK08593 158 RK--------YGPL--------LPGFVHIPFPDKYRGM--------YEE---------PDANFVEEYLAPLKEMFEKY-- 202 (445)
T ss_pred cC--------CCCC--------CCCcEEeCCCcccccc--------ccC---------CcHHHHHHHHHHHHHHHHhh--
Confidence 21 1111 1345667777665431 110 01122344556777777532
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
..++++||||+||| ||+||+++||++|+++|+++|++||++||+|||||||||+|++|+++++|++|||+|+||+|||
T Consensus 203 -~~~~~iAavI~EPv-~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t~gK~l~~ 280 (445)
T PRK08593 203 -LPADEVACIVIETI-QGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLAG 280 (445)
T ss_pred -cCCCceEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEeeecccccC
Confidence 13578999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +|+|++++++++++.+... .|++||++||++|||++++|++++++ ++.++++.++++|+++|.++.++
T Consensus 281 G-~p~gav~~~~~i~~~~~~~------~~~~T~~~~pl~~aaa~a~l~~l~~~----~l~~~~~~~g~~l~~~L~~l~~~ 349 (445)
T PRK08593 281 G-MPMSAIVGRKEIMESLEAP------AHLFTTGANPVSCAAALATIDMIEDE----SLLQRSAEKGEYARKRFDQWVSK 349 (445)
T ss_pred C-cccEEEEEcHHHHhhhccC------CCCCCCCCCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHhc
Confidence 9 7999999999999988422 47889999999999999999999884 55566666777777777777788
Q ss_pred CCCcceEEeeeeEEEEEEecCCCC--CCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCN--AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~--~~~~~~~~~~~~~l~~Gv~ 816 (817)
+|.|++|||.|+|++++|..+... .+.+....+...|+++||+
T Consensus 350 ~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~ 394 (445)
T PRK08593 350 YNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVV 394 (445)
T ss_pred CCcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeE
Confidence 999999999999999999864211 1224567788999999985
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-64 Score=575.40 Aligned_cols=368 Identities=18% Similarity=0.201 Sum_probs=292.3
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|+++..+.......++...+||++|++
T Consensus 21 ~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~ 93 (442)
T TIGR00709 21 LPTAFAKAQGC--WVTDVEGK----EYLDFLAGAGTLALGHN-HPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLN 93 (442)
T ss_pred CCceEEecccc--EEEeCCCC----EEEEccccHhhhcCCCC-CHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHH
Confidence 36788888886 59999999 99999999999999999 9999999999999866544334568999999999999
Q ss_pred hcCCC--CcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCC
Q 003472 455 GVGKG--WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (817)
Q Consensus 455 ~~~~~--~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~ 532 (817)
.+|.+ ....+||+||||||||+|||+| |+||+| ++||+++++|||+|.+++++++...+
T Consensus 94 ~~p~~~~~~~~~f~~~sGsEA~e~AlklA-r~~tgr------------------~~Ii~~~~~yHG~t~~~~s~t~~~~~ 154 (442)
T TIGR00709 94 IIPKRKMDYKLQFPGPSGADAVEAAIKLA-KTYTGR------------------TNVISFSGGFHGMTIGALAVTGNLFA 154 (442)
T ss_pred hCCCcCCCccEEEeCCCHHHHHHHHHHHH-HHhcCC------------------CeEEEEcCCcCCchHHHHhhcCChhh
Confidence 88742 1234566799999999999999 788654 58999999999999999999986544
Q ss_pred CCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCC
Q 003472 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (817)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (817)
+.+ +.+. .+++..++.|+.+++ +|+.- .+.....+.+.+++.++...
T Consensus 155 ~~~--------~~~~--------~~~~~~~~~~~~~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~ 201 (442)
T TIGR00709 155 KNA--------VGML--------MPGVQFMPYPHEYRC--------PFGIG---------GEAGSNASIEYFENFIEDVE 201 (442)
T ss_pred hcc--------CCCC--------CCCcEEeCCCccccc--------cccCC---------chhHHHHHHHHHHHHHHhhc
Confidence 432 1111 123345556655432 12210 01112223344555554211
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccC
Q 003472 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (817)
Q Consensus 613 ~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lg 692 (817)
...+++||||+||+ ||++|+++||++||++|+++|++||++||+|||||||||||++|+++++|++|||+|+||+||
T Consensus 202 --~~~~~iaavi~Epi-~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~ 278 (442)
T TIGR00709 202 --SGVDKPAAVILEAI-QGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVMSKAVG 278 (442)
T ss_pred --cCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEEEccccc
Confidence 23568999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
|| +|+|+++++++ ++.+.. ..|++||+|||++||||+++|++++++ ++.++++.++++|.+++.++.+
T Consensus 279 ~G-~Pigav~~~~~-~~~~~~------~~~~~T~~gnpla~aaa~a~L~~i~~~----~l~~~~~~~g~~l~~~L~~l~~ 346 (442)
T TIGR00709 279 GG-LPLAVLLIAPE-FDAWQP------AGHTGTFRGNQLAMVTGTEALNYWKDD----NLAQNAQERGERITSFLDDMIK 346 (442)
T ss_pred CC-cccEEEEEchH-HhccCC------CcCCCCCCcCHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHHH
Confidence 99 89999999999 566532 258899999999999999999999884 5555666777777777777778
Q ss_pred cCCCcceEEeeeeEEEEEEecCCCCC--------CcchHHHHHHHHHHcCCC
Q 003472 773 SHRTVQRVVALGTLCAIELQAAGCNA--------GYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 773 ~~p~V~~VrG~Glm~gIel~~~~~~~--------~~~~~~~~~~~~l~~Gv~ 816 (817)
+||.|++|||+|+|++|||+++.... +.+....+...++++|++
T Consensus 347 ~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl 398 (442)
T TIGR00709 347 EHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLL 398 (442)
T ss_pred hCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeE
Confidence 99999999999999999998653111 123567788899999985
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-64 Score=569.80 Aligned_cols=385 Identities=31% Similarity=0.447 Sum_probs=311.0
Q ss_pred chhhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhc
Q 003472 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (817)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~ 432 (817)
+.++..+.+|+|++++... ..|+++++++|. ++||.||+ +||||++|+|++++||+ ||+|++|+++|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~ 74 (423)
T PRK05964 4 LMALDLSHVWHPYTQMKLH--PPPIPIVRAEGA--YLYLADGR----ELIDAISSWWVATHGHN-HPYIDQAIREQLDRL 74 (423)
T ss_pred hhhhhhcceecCCCCcccc--CCCeeEEecccc--EEEeCCCC----EEEEcchhHHhccCCCC-CHHHHHHHHHHHhhC
Confidence 3345567789998776432 357899998886 59999999 99999999999999999 999999999999998
Q ss_pred cccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEE
Q 003472 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (817)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~ 512 (817)
.+..+..+.+++..+|+++|++.+|.+ +++|+|++|||||||+|||+| |+|+..+|. ++|++||+|
T Consensus 75 ~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~A~kla-r~~~~~~~~------------~~r~~ii~~ 140 (423)
T PRK05964 75 DHVIFAGFTHEPAERLAQRLVALTPGG-LDHVFFSDSGSVAVEVALKMA-LQYWRNRGE------------PGRSRFLSL 140 (423)
T ss_pred CCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEE
Confidence 776544567899999999999998744 689999999999999999999 778655443 568899999
Q ss_pred cCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccC
Q 003472 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (817)
Q Consensus 513 ~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~ 592 (817)
+++|||+|.+++++++...++.. +.+ . ..++..+++| ++|
T Consensus 141 ~~~yHG~t~~~ls~~~~~~~~~~-----~~~---~--------~~~~~~~~~~--------------~~d---------- 180 (423)
T PRK05964 141 RGGYHGDTIGTMSVGDRGGMHAL-----YTP---L--------LFEQVTAPFP--------------PDG---------- 180 (423)
T ss_pred cCCcCCccHHHHhcCCCcccccc-----ccC---c--------CCCCEEeCCC--------------cch----------
Confidence 99999999999999976544321 110 0 0122344443 222
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc
Q 003472 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (817)
Q Consensus 593 ~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~ 672 (817)
....+.+.+++.+++ .++++||||+||++|++||++++|++||++|+++|++||++||+|||||||||+|++
T Consensus 181 ---~~~~~~~~l~~~l~~-----~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~ 252 (423)
T PRK05964 181 ---YEQATLDALEALLEK-----HAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTL 252 (423)
T ss_pred ---hHHHHHHHHHHHHHh-----CCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcch
Confidence 112335677888863 357899999999449999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcH
Q 003472 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (817)
Q Consensus 673 ~a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l 752 (817)
|+++++|++|||+|+||+|+|||+|+|++++++++++.+........+.|++||++||++|++++++|+++++++ +
T Consensus 253 ~a~~~~~v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~----~ 328 (423)
T PRK05964 253 FACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEP----V 328 (423)
T ss_pred hHHHhcCCCCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcC----H
Confidence 999999999999999999999999999999999999988532111345699999999999999999999998844 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 753 IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 753 ~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.++++.+++++++.+.++ .++|.|.+|||.|+|++|+|.++. . .+....+...++++||+
T Consensus 329 ~~~~~~~g~~l~~~l~~l-~~~~~i~~vrg~Gl~~~i~l~~~~--~-~~~~~~l~~~l~~~Gv~ 388 (423)
T PRK05964 329 LERVAALSAGLAEGLEPF-RDLPGVADVRVLGAIGAVELDRPV--L-ERDGPALRAFALERGVL 388 (423)
T ss_pred HHHHHHHHHHHHHHHHhh-ccCCCeEEeecccEEEEEEeccCc--c-hhHHHHHHHHHHHCCeE
Confidence 555556666666665544 468889999999999999997652 0 12466788899999985
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=567.78 Aligned_cols=367 Identities=22% Similarity=0.283 Sum_probs=298.5
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||+ +||||++|+|+.++||+ ||+|++|+++|++++.+.....+.+++..+||++|++
T Consensus 36 ~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~ 108 (441)
T PRK05769 36 YPLVIERGEGV--WVEDVDGN----VYLDFNAGIAVTNVGHA-HPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVE 108 (441)
T ss_pred CCeeEEecceE--EEEeCCCC----EEEECCCchhhcccCCC-CHHHHHHHHHHHHhccCccCcccCCHHHHHHHHHHHH
Confidence 46788888775 59999999 99999999999999999 9999999999999988765545678999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCC-CCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~-~~~ 533 (817)
.+|.+++++|+|+||||||||+|||+| |+|+++ .+||+++++|||+|.+++++++.. .++
T Consensus 109 ~~p~~~~~~v~f~~SGsEA~e~AlklA-r~~tgr------------------~~Ii~~~~~yHG~t~~~ls~t~~~~~~~ 169 (441)
T PRK05769 109 IAPGGFEKKVFFTNSGTESNEAAIKIA-RYHTGR------------------KYIIAFLGAFHGRTYGSLSLTASKPVQR 169 (441)
T ss_pred hCCCCCCCEEEECCchHHHHHHHHHHH-HHHhCC------------------CeEEEECCCcCCccHHHHHhcCCCcccc
Confidence 887544689999999999999999999 788754 589999999999999999998643 232
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHH-HHhcCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ-NLLQNP 612 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~-~L~~~~ 612 (817)
.. |. + ..+++.+++.|+.++. +|++. +.++..+.+.+.+++ .+++.
T Consensus 170 ~~-----~~---~--------~~~~~~~~~~~~~~~~--------~~~~~--------~~~~~~~~~~~~le~~~~~~~- 216 (441)
T PRK05769 170 KG-----FF---P--------LMPGVIHVPYPNPYRN--------PWGIE--------NPEECGNAVLDFIEDYLFKKL- 216 (441)
T ss_pred cC-----CC---C--------CCCCeEEeCCCccccc--------cccCC--------chHHHHHHHHHHHHHHHHhhc-
Confidence 21 11 1 1134556677765532 13311 112333345566777 33321
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccC
Q 003472 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (817)
Q Consensus 613 ~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lg 692 (817)
.+++++||||+||| ||++|+++||++||++|+++|++||++||+|||||||||+|++|+++++|++||++|+||++|
T Consensus 217 --~~~~~iaavi~Epv-~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~K~l~ 293 (441)
T PRK05769 217 --VPPEEVAAIIVEPI-QGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKAIA 293 (441)
T ss_pred --cCCCceEEEEECcc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEEEccccc
Confidence 24578999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
|| +|+|++++++++++.+. ..|++||+|||++|++|+++|+++++ ++.+++. .++++|+++|.++.+
T Consensus 294 ~G-~p~gav~~~~~i~~~~~-------~~~~~T~~g~p~~~aaa~a~L~~l~~-~~~~~~~----~~g~~l~~~L~~l~~ 360 (441)
T PRK05769 294 GG-LPLGAVIGRAELMFLPP-------GSHANTFGGNPVAAAAALATLEELEE-GLLENAQ----KLGEYLRKELKELKE 360 (441)
T ss_pred CC-cccEEEEEehhhhhcCC-------CCCCCCCCcCHHHHHHHHHHHHHHHH-HHHHHHH----HHHHHHHHHHHHHHH
Confidence 99 89999999999986442 25899999999999999999999977 6555555 455556667777777
Q ss_pred cCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 773 SHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 773 ~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++|.+++|||.|+|++|+|+++..+...+....+...++++||+
T Consensus 361 ~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil 404 (441)
T PRK05769 361 KYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLL 404 (441)
T ss_pred hCCCeeeeecceEEEEEEeccCCccccHHHHHHHHHHHHhCCcE
Confidence 89999999999999999997653122334667788999999985
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-63 Score=613.94 Aligned_cols=365 Identities=17% Similarity=0.203 Sum_probs=299.3
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||| +||||++|+ .++||+ ||+|++|+++|++++.... .+.++...+||++|++
T Consensus 606 ~p~~i~~g~G~--~l~D~dG~----~ylD~~~g~--~~lGH~-hp~v~~Ai~~q~~~l~~~~--~~~~~~~~~lAe~L~~ 674 (1013)
T PRK06148 606 DPIKFVRGWGV--WLIDNRGR----AYLDCFNNV--CHVGHA-HPRVVAAAARQAARLNTNT--RYLHDAIVAYAERLTA 674 (1013)
T ss_pred CCceEEEeeec--EEEECCCC----EEEEcccCh--hhcCCC-CHHHHHHHHHHHhhcCCcC--CcCCHHHHHHHHHHHH
Confidence 47889998886 59999999 999999984 789999 9999999999999874332 4578999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
.+|.+ +++|+|+||||||||+|||+| |+||++ .+||+|+++|||+|.+++++|+.. ++.
T Consensus 675 ~~p~~-~~~v~f~nSGsEA~e~AlklA-r~~tGr------------------~~ii~~~~~YHG~t~~a~s~s~~~-~~~ 733 (1013)
T PRK06148 675 TLPDG-LTVAFFVNSGSEANSLALRLA-RAHTGQ------------------RDAIVLDHAYHGTTTELIDLSPYK-FNR 733 (1013)
T ss_pred hCCCC-cCEEEEeCCcHHHHHHHHHHH-HHhcCC------------------CeEEEEcCCccCCCcchhhcCchh-hcc
Confidence 88754 689999999999999999999 888764 489999999999999999998732 322
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
+ + ++. ..+++..++.|+++++ +|++.+ .+....+.+.+++.++...
T Consensus 734 ~----~----~~~-------~~~~~~~~~~p~~~~~--------~~~~~~---------~~~~~~~~~~l~~~i~~~~-- 779 (1013)
T PRK06148 734 K----G----GKG-------RPDHVEVAEVPDSYRG--------PERWPD---------AEHGRRFAESVAEQIAAMA-- 779 (1013)
T ss_pred c----C----CCC-------CCCCceEcCCCCcccc--------CCCCCh---------hhhHHHHHHHHHHHHHhhh--
Confidence 1 1 110 1123445666665542 244321 1223345566666665321
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc-cchhhhcCCCCceeecccccCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~-~~a~e~~gv~PDivtlgK~Lgg 693 (817)
..++++||||+||| ||+||+++||++||++||++|++||++||+|||||||||||+ ||+++++||+|||+|+||+|||
T Consensus 780 ~~~~~iAAvI~EPv-~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~gK~lgg 858 (1013)
T PRK06148 780 AKGRGPAFFIAESI-PSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGN 858 (1013)
T ss_pred ccCCceEEEEEcCC-cCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeeecccccC
Confidence 23578999999998 999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +|+||+++++++++.+... ..|++||+|||++||||+|+|++|++ +++.++++.+|++|+++|.++.++
T Consensus 859 G-~Plgav~~~~ei~~~~~~g-----~~~~~Tf~gnpla~aaa~a~L~~i~~----e~l~~~~~~~G~~l~~~L~~l~~~ 928 (1013)
T PRK06148 859 G-HPMGAVVTTREIADSFDNG-----MEYFNTFGGNPVSCAIGLAVLDIIED----EDLQRNALEIGNYLLAGLRELQDR 928 (1013)
T ss_pred C-cceEEEEEcHHHHhhccCC-----CccccCCCCCHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9 7999999999999988532 24789999999999999999999998 566666777888888888888889
Q ss_pred CCCcceEEeeeeEEEEEEecCCCC--CCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCN--AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~--~~~~~~~~~~~~~l~~Gv~ 816 (817)
+|.|++|||.|+|++|||+.+... .+.+....+...|+++||+
T Consensus 929 ~~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl 973 (1013)
T PRK06148 929 FDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGIL 973 (1013)
T ss_pred CCCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeE
Confidence 999999999999999999865322 2235677899999999985
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=558.02 Aligned_cols=360 Identities=22% Similarity=0.269 Sum_probs=297.8
Q ss_pred eEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhh
Q 003472 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (817)
Q Consensus 376 p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (817)
|+++++++|. |+||+||| +||||++|+|+.++||+ ||+|++|+++|++++.+.....+.++...+|+++|++.
T Consensus 23 p~~i~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~ 95 (425)
T PRK07495 23 QIYADRAENA--EIWDKEGR----RYIDFAAGIAVVNTGHR-HPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNAL 95 (425)
T ss_pred CeeEEeeeec--EEEeCCCC----EEEEccccHHhhccCCC-CHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHHh
Confidence 6788888886 59999999 99999999999999999 99999999999999877654456789999999999998
Q ss_pred cCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCC-CCCCC
Q 003472 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-SPYTG 534 (817)
Q Consensus 456 ~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~-~~~~~ 534 (817)
+|.++.++|+|+||||||||+|||+| |.|+++ .+||+|+++|||+|.+++++++. ..++.
T Consensus 96 ~p~~~~~~v~f~~SGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~~~~~~~~~~~~ 156 (425)
T PRK07495 96 VPGDFAKKTIFVTTGAEAVENAVKIA-RAATGR------------------SAVIAFGGGFHGRTFMGMSLTGKVVPYKV 156 (425)
T ss_pred CCCCCCCEEEECCchHHHHHHHHHHH-HHhhCC------------------CeEEEECCCcCCccHHHhhhcCCCccccc
Confidence 87543479999999999999999999 788654 58999999999999999999874 22332
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. +++. .+++.++++|+.+++ . . ...+++.+++.+++.
T Consensus 157 ~--------~~~~--------~~~~~~~~~~~~~~g--------------------~---~-~~~~~~~l~~~~~~~--- 193 (425)
T PRK07495 157 G--------FGAM--------MPDVYHVPFPVELHG--------------------V---S-VEQSLAALDKLFKAD--- 193 (425)
T ss_pred C--------CCCC--------CCCeEEecCCccccc--------------------c---c-HHHHHHHHHHHHHhc---
Confidence 1 1111 134456666644311 0 0 112345667777531
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
.+++++||||+||+ |+++|++++|++|+++|+++|++||++||+|||||||||+|++|+++++|++|||+||||+||||
T Consensus 194 ~~~~~iaavi~EPv-~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi~tlsK~l~~G 272 (425)
T PRK07495 194 VDPQRVAAIIIEPV-QGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADLTTMAKGLAGG 272 (425)
T ss_pred cCCCceEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCEEeehhhhcCC
Confidence 24578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+... .|++||++||++||+++++|+++++ +++.++++.++++|++++.++.+++
T Consensus 273 -~pigav~~~~~i~~~~~~~------~~~~T~~~~pl~~aaa~a~l~~l~~----~~l~~~~~~~g~~l~~~L~~l~~~~ 341 (425)
T PRK07495 273 -FPLAAVTGRAEIMDAPGPG------GLGGTYGGNPLGIAAAHAVLDVIEE----EDLCERANQLGNRLKQRLASLRETV 341 (425)
T ss_pred -ccceEEEEcHHHHhccCCC------CcCCCCCCCHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHHHHHHHhhC
Confidence 7999999999999988532 4889999999999999999999988 4566666777777777887777889
Q ss_pred CCcceEEeeeeEEEEEEecCCC-CCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGC-NAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~-~~~~~~~~~~~~~~l~~Gv~ 816 (817)
|.+.+|||.|+|++|||+++.. ..+.+....+...++++|++
T Consensus 342 ~~i~~vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl 384 (425)
T PRK07495 342 PEIADIRGPGFMNAVEFNDADSGLPSAEFANRVRLKALEKGLI 384 (425)
T ss_pred CCeeeeecCceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeE
Confidence 9999999999999999976531 11123467889999999985
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-62 Score=557.98 Aligned_cols=352 Identities=18% Similarity=0.268 Sum_probs=286.4
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||+ +||||++|+|+.++||+ ||+|++|+++|++++.+. .+.++...+|+++|++
T Consensus 35 ~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~---~~~~~~~~~la~~l~~ 104 (428)
T PRK12389 35 APVVMERGKGA--YFYDVDGN----KYIDYLAAYGPIITGHA-HPHITKAITEAAENGVLY---GTPTELEIEFAKMLKE 104 (428)
T ss_pred CCeEEEeccCC--EEEeCCCC----EEEEccccccccccCCC-CHHHHHHHHHHHHhCCcc---CCCCHHHHHHHHHHHH
Confidence 47889998886 59999999 99999999999999999 999999999999987553 3578999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
.+|. +++|+|+||||||||+|||+| |.|+++ .+||+|+++|||+|.+++++++...++.
T Consensus 105 ~~p~--~~~v~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~~~~~~~~~~~ 163 (428)
T PRK12389 105 AIPS--LEKVRFVNSGTEAVMTTIRVA-RAYTGR------------------TKIIKFAGCYHGHSDLVLVAAGSGPSTL 163 (428)
T ss_pred hCCC--CcEEEEeCCHHHHHHHHHHHH-HHhhCC------------------CEEEEECCCcCCChHHHHHhcCCccccc
Confidence 8873 689999999999999999999 788754 5899999999999999999987543321
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. .|...+ + .++ ..+++.+ ++|||. +.+++.+++
T Consensus 164 ~--~~~~~~---~-~~~---~~~~~~~----------------~~~~d~------------------~~l~~~l~~---- 196 (428)
T PRK12389 164 G--TPDSAG---V-PKS---IAQEVIT----------------VPFNDI------------------EALKEALDK---- 196 (428)
T ss_pred C--CCCCCC---C-CCc---ccCceEE----------------cCCCCH------------------HHHHHHHHh----
Confidence 1 011000 0 000 0011112 224543 456667763
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
.++++||||+||| ||++|+++||++||++|+++|++||++||+||||||| |||.+|+++++||+|||+|+||+||||
T Consensus 197 -~~~~vaavi~EPv-~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv~PDivt~gK~lggG 273 (428)
T PRK12389 197 -WGDEVAAVLVEPI-VGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDLLGVEPDLTALGKIIGGG 273 (428)
T ss_pred -cCCcEEEEEEeCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhHHhCCCCCeeeechhhcCC
Confidence 3578999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+||+++++++++.+... ....|++||+|||++|||++|+|+++++++ +.++++.++++|++++.++.+++
T Consensus 274 -~Pi~av~~~~~i~~~~~~~---~~~~~~~T~~gnpl~~Aaala~L~~l~~~~----l~~~~~~~g~~l~~~L~~l~~~~ 345 (428)
T PRK12389 274 -LPIGAYGGRKDIMEQVAPL---GPAYQAGTMAGNPASMAAGIACLEVLQQEG----VYEKLDRLGAMLEEGILEAAEKH 345 (428)
T ss_pred -CceeEEeEHHHHHhhhccC---CCcccccCCccCHHHHHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHHHHHhC
Confidence 7999999999999988532 124689999999999999999999998844 55556667777777777777889
Q ss_pred CCcceE-EeeeeEEEEEEecCCCC-------CCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRV-VALGTLCAIELQAAGCN-------AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~V-rG~Glm~gIel~~~~~~-------~~~~~~~~~~~~~l~~Gv~ 816 (817)
|.+.+| ||.| |++++|.++... .+......+.+.++++||+
T Consensus 346 ~~~~~v~r~~g-~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 394 (428)
T PRK12389 346 GITITINRLKG-ALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGIN 394 (428)
T ss_pred CCCEEEEecCc-EEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcE
Confidence 988888 8888 889999865211 0113467889999999986
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-61 Score=552.53 Aligned_cols=366 Identities=23% Similarity=0.288 Sum_probs=297.1
Q ss_pred eEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhh
Q 003472 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (817)
Q Consensus 376 p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (817)
|+++++++|. ++||.||| +||||++|+|+.+|||+ ||+|++|+++|++++.+.......++...+|+++|+++
T Consensus 26 ~~~~~~~~G~--~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~ 98 (433)
T PRK08117 26 NLPVVKGEGC--YYYGVDGK----EYLDFTSGIAVANVGHR-HPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEI 98 (433)
T ss_pred CceEEeeeee--EEEeCCCC----EEEECCcchhhccCCCC-CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHh
Confidence 4788888886 59999999 99999999999999999 99999999999999877654446789999999999999
Q ss_pred cCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCC-CCCCC
Q 003472 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-SPYTG 534 (817)
Q Consensus 456 ~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~-~~~~~ 534 (817)
+|.+ .++++|+||||||||+|||+| |.|+++ ++||+++++|||+|.+++++++. ..++.
T Consensus 99 ~~~~-~~~v~f~~SGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~s~~~~~~~~~~ 158 (433)
T PRK08117 99 TPGG-LDCFFFSNSGAEAIEGALKLA-KHVTKR------------------PYIISFTGCFHGRTLGALSVTTSKSKYRK 158 (433)
T ss_pred CCCC-CCEEEEeCcHHHHHHHHHHHH-HHhcCC------------------CeEEEECCCcCCcCHHHHhhcCCCccccc
Confidence 8643 689999999999999999999 778653 58999999999999999999864 22332
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. +.+ ..+++.++|+|+.+++... .+.......+.+.+++.+++.
T Consensus 159 ~--------~~~--------~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~~~~~~--- 202 (433)
T PRK08117 159 Y--------YQP--------LLGSVYQAPYPYCDRCPKG-----------------EDPEVCFLECLRDLESLFKHQ--- 202 (433)
T ss_pred c--------CCC--------CCCCcEEeCCCcccccccc-----------------CchhHHHHHHHHHHHHHHHhc---
Confidence 1 011 1134566777765432110 001122223446677777632
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
..++++||||+||| ||++|+++|+++|+++|+++|++||++||+|||||||||+|++|+++++|++|||+|+||+||||
T Consensus 203 ~~~~~~aavi~Epi-~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~lg~G 281 (433)
T PRK08117 203 VTPEEVAAVIIEPV-LGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIASG 281 (433)
T ss_pred cCCCcEEEEEECCe-eCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCCEeehhhhccCC
Confidence 23568999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+.. ..|++||++||++|+|++++|++++++++++ +.+.+++++++++.++..++
T Consensus 282 -~pigav~~~~~i~~~~~~------~~~~~T~~~np~~~aaa~a~L~~l~~~~l~~----~~~~~g~~l~~~L~~l~~~~ 350 (433)
T PRK08117 282 -LPLSAVVASKELMEQWPL------GSHGTTFGGNPVACAAALATLEVIKEEKLLD----NANEMGAYALERLEVLKEKH 350 (433)
T ss_pred -CcceeEEEcHHHHhhccC------CCCCCCCCcCHHHHHHHHHHHHHHHhccHHH----HHHHHHHHHHHHHHHHHhcC
Confidence 899999999999998743 2589999999999999999999998754444 45555666666666666789
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+.+|||.|+|++++|.++....+.+....+...++++||+
T Consensus 351 ~~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 392 (433)
T PRK08117 351 PVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLL 392 (433)
T ss_pred CceeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCE
Confidence 999999999999999998753122235667788999999984
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-61 Score=548.38 Aligned_cols=383 Identities=27% Similarity=0.437 Sum_probs=303.5
Q ss_pred hhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccc
Q 003472 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (817)
Q Consensus 355 ~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~ 434 (817)
+.+..++|+||..... + ..+..+++++|. ++||.||+ +||||++|+|+.+|||+ ||+|++|+++|++++.+
T Consensus 9 ~~~~~~~~~~~~~~~~-~-~~~~~~~~a~G~--~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~~~~~~~~ 79 (427)
T TIGR00508 9 AFDQRHIWHPYTSMSS-P-LPVYPVESADGV--ELTLDDGR----RLIDGMSSWWAAIHGYN-HPRLNAAAQKQIDKMSH 79 (427)
T ss_pred hccccccccCccCccc-c-CCCceEEeeeee--EEEeCCCC----EEEEccchHHHhcCCCC-CHHHHHHHHHHHHhcCC
Confidence 3445667888876521 1 234667888775 59999999 99999999999999999 99999999999999887
Q ss_pred cCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcC
Q 003472 435 VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKG 514 (817)
Q Consensus 435 ~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~g 514 (817)
..+...+++...+|+++|++.+|.+ +++|+|++||+||||+|+|+| |.|++.+|. ++|.+||+|++
T Consensus 80 ~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~f~~sGseA~e~AlklA-r~~~~~~~~------------~~r~~il~~~~ 145 (427)
T TIGR00508 80 VMFGGFTHKPAIELCQKLVKMTPNA-LDCVFLADSGSVAVEVALKMA-LQYWQAKGE------------KNRQKFLTIRS 145 (427)
T ss_pred ccccccCCHHHHHHHHHHHhhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhhCC------------CCccEEEEEcC
Confidence 6654567899999999999998765 689999999999999999999 777654433 56789999999
Q ss_pred CccCCccccccccCCCC-CCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCc
Q 003472 515 SYHGDTLGAMEAQAPSP-YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (817)
Q Consensus 515 syHG~t~galslt~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~ 593 (817)
+|||+|.+++++++... ++.. |.+ . .++...++.|... |..
T Consensus 146 ~yHG~t~~~~s~~~~~~~~~~~-----~~~---~--------~~~~~~~~~p~~~-----------~~~----------- 187 (427)
T TIGR00508 146 GYHGDTFGAMSVCDPENSMHSL-----YKG---Y--------LPEQIFAPAPQNR-----------FDE----------- 187 (427)
T ss_pred CcCCccHhhhcccCCccccccc-----ccc---c--------CCCCeEcCCCCcc-----------ccc-----------
Confidence 99999999999987532 2211 110 0 0112233333211 100
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc
Q 003472 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (817)
Q Consensus 594 ~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~ 673 (817)
.......+.+++.+++ .++++||||+|||+|++||+++++++||++|+++|++||++||+|||||||||+|++|
T Consensus 188 -~~~~~~~~~l~~~l~~-----~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~ 261 (427)
T TIGR00508 188 -EWNEEAITPLAKLMEL-----HSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLF 261 (427)
T ss_pred -hhHHHHHHHHHHHHHh-----cCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccc
Confidence 0011223567777763 3568999999996699999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHH
Q 003472 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (817)
Q Consensus 674 a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~ 753 (817)
+++++|++|||+|+||+|+|||+|++++++++++++.+.... ...+.|++||++||++||+++++|++++++++.++
T Consensus 262 ~~~~~~v~pDi~~~gK~l~gG~~p~~a~~~~~~~~~~~~~~~-~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~-- 338 (427)
T TIGR00508 262 ACEHAGVVPDILCVGKALTGGYMTLSATVTTDKVAQTISSGE-AGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQ-- 338 (427)
T ss_pred hhhhcCCCCCEEEechhhhcCcccceEEEEcHHHHHHHhcCC-CCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHH--
Confidence 999999999999999999999999999999999999986431 12356999999999999999999999988555444
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 754 PERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 754 ~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+.++++|+++|.++ .+++.+.+|||.|+|++|+|.++ .....+.++++++||+
T Consensus 339 --~~~~~~~l~~~L~~l-~~~~~i~~vrg~G~~~~i~~~~~------~~~~~~~~~l~~~Gv~ 392 (427)
T TIGR00508 339 --VSAIENQLKRELSPL-RKNPVVKDVRVLGAIGVVEMYKP------VNVEELQKKFVEQGVW 392 (427)
T ss_pred --HHHHHHHHHHHHHHh-hcCCCEEeEeccccEEEEEECCc------cCHHHHHHHHHHCCeE
Confidence 455555555566554 45777889999999999999754 2346788999999986
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-61 Score=546.27 Aligned_cols=361 Identities=22% Similarity=0.268 Sum_probs=297.7
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. ++||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+..+..+.+++..+|+++|++
T Consensus 22 ~~~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~ 94 (421)
T PRK09792 22 CNFFAQSAENA--TLKDVEGN----EYIDFAAGIAVLNTGHR-HPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINA 94 (421)
T ss_pred CCeeEEecccc--EEEeCCCC----EEEEccCchhhhcCCCC-CHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHH
Confidence 36788898886 59999999 99999999999999999 9999999999999987765545679999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCC-CCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~-~~~ 533 (817)
.+|....++++|++|||||||+|||+| |++|++ .+||+|+++|||+|.+++++++.. .++
T Consensus 95 ~~p~~~~~~~~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~s~~~~~~~~~ 155 (421)
T PRK09792 95 LAPVSGQAKTAFFTTGAEAVENAVKIA-RAHTGR------------------PGVIAFSGGFHGRTYMTMALTGKVAPYK 155 (421)
T ss_pred hCCCCCCceEEEeCChHHHHHHHHHHH-HHhcCC------------------CeEEEECCCcCCccHHHHhhcCCCcccc
Confidence 876422579999999999999999999 777654 489999999999999999998742 233
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
.+ ++++ .+++.++++|...++ .....+.+.+++.+++.
T Consensus 156 ~~--------~~~~--------~~~~~~v~~p~~~~~------------------------~~~~~~~~~l~~~~~~~-- 193 (421)
T PRK09792 156 IG--------FGPF--------PGSVYHVPYPSDLHG------------------------ISTQDSLDAIERLFKSD-- 193 (421)
T ss_pred cC--------CCCC--------CCCcEEcCCCccccc------------------------ccHHHHHHHHHHHHHhc--
Confidence 21 1221 123455666643210 00112346677777631
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
..+++|||||+||+ |+++|+.++|++|+++|+++|++||++||+|||+|||||+|++|+++++|++|||+|+||+|||
T Consensus 194 -~~~~~iaavi~EPv-q~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi~t~gK~l~~ 271 (421)
T PRK09792 194 -IEAKQVAAIIFEPV-QGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLAG 271 (421)
T ss_pred -cCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcEEEeehhhcC
Confidence 13578999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +|+|++++++++++.+... .|++||++||++|+||+++|++++++ ++.++.+.+++++++.+.++.++
T Consensus 272 G-~pigav~~~~~i~~~~~~~------~~~~T~~gnpl~~aaa~a~l~~l~~~----~~~~~~~~~g~~l~~~l~~l~~~ 340 (421)
T PRK09792 272 G-MPLSGVVGNANIMDAPAPG------GLGGTYAGNPLAVAAAHAVLNIIDKE----SLCERANQLGQRLKNTLIDAKES 340 (421)
T ss_pred C-CceEEEEEcHHHHhccCCC------CcCCCCCCCHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHh
Confidence 9 7999999999999988532 48899999999999999999999884 55666667777787777777788
Q ss_pred CCCcceEEeeeeEEEEEEecCCCC-CCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCN-AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~-~~~~~~~~~~~~~l~~Gv~ 816 (817)
+|.+.+|||+|+|++|+|.++... .+......+...++++||+
T Consensus 341 ~p~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~ 384 (421)
T PRK09792 341 VPAIAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLL 384 (421)
T ss_pred CCCcceecccceEEEEEecCCccCCcchHHHHHHHHHHHHCCcE
Confidence 999999999999999999754211 1124577889999999985
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-61 Score=547.81 Aligned_cols=371 Identities=17% Similarity=0.194 Sum_probs=278.6
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHH--HHhccccCCCCCCChHHHHHHHHH
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYT--AARFGHVMFPENVYEPALECAELL 452 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q--~~~~~~~~~~~~~~~~~~eLae~L 452 (817)
.|+++++++|. |+||.||+ +||||+||+|+.++||+ ||+|++|+++| ...+.+.. .+.+++..+|+++|
T Consensus 40 ~p~~~~~a~G~--~l~D~dG~----~ylD~~sg~~~~~lGh~-~p~i~~Ai~~q~~~~~l~~~~--~~~~~~~~~la~~l 110 (464)
T TIGR00699 40 FLADYEKSRGN--YLVDVDGN----RLLDLYSQISSIPIGYN-NPALLKAAQSPEMATTLINRP--ALGNFPSKDWAKIL 110 (464)
T ss_pred cceEEEecccC--EEEeCCCC----EEEEccCCHhhhcCCCC-CHHHHHHHHHHHHHHhhcccc--cCCcHHHHHHHHHH
Confidence 37788888886 59999999 99999999999999999 99999999995 44444432 35688889999998
Q ss_pred Hh----hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhcccccccc--ccCC-----Ccccccc--ceEEEEEcCCccCC
Q 003472 453 LQ----GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD--FLGK-----DTTEKCI--ELKVLALKGSYHGD 519 (817)
Q Consensus 453 ~~----~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~--~~~~-----~~~~~~~--r~~II~~~gsyHG~ 519 (817)
.+ .+|.+ +++|+|+||||||||+|||+| |.|++..|.... ..++ +..+.++ |.+||+|+++|||+
T Consensus 111 ~~~l~~~~p~~-~~~v~f~~SGsEAvE~AlKlA-r~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~ 188 (464)
T TIGR00699 111 KEGILKVAPKG-QDQVWTGMSGSDANELAFKAA-FMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGR 188 (464)
T ss_pred HHhHHhhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCc
Confidence 54 56643 689999999999999999999 777653221000 0000 0000122 45999999999999
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
|.+++++++...++.. ++ |. .+..++|+|+ +++.... +. .+.......
T Consensus 189 t~~als~t~~~~~~~~---------~~----~~----~~~~~~p~p~-~~~~~~~-----~~---------~~~~~~~~~ 236 (464)
T TIGR00699 189 LFGSLSTTRSKPIHKL---------DI----PA----FDWPQAPFPS-LKYPLEE-----HV---------KENAKEEQR 236 (464)
T ss_pred cHHHHHhcCCcccccc---------CC----CC----CCceecCCCC-ccccccc-----cc---------ccchhHHHH
Confidence 9999999986433321 00 10 1223455553 1110000 00 001122334
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
+++.+++.|++ .+++|||||+||| ||++|+++||++||++||++|++||++||+|||||||||||++|+++++|
T Consensus 237 ~l~~l~~~l~~-----~~~~iAAvI~EPv-~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~g 310 (464)
T TIGR00699 237 CLEEVEDLIKK-----WHKPVAAIIVEPI-QSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWN 310 (464)
T ss_pred HHHHHHHHHHh-----cCCcEEEEEEeCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcC
Confidence 56778888873 3567999999998 99999999999999999999999999999999999999999999999999
Q ss_pred CC--CceeecccccC-CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHH
Q 003472 680 CV--PDIACYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (817)
Q Consensus 680 v~--PDivtlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~ 756 (817)
|+ |||+|+||+|| ||| + +.+ +.++.. ..+.|++||+|||++|||++|+|+++++ +++.+++
T Consensus 311 v~~~PDi~t~gK~lg~gG~-~----~~~-~~~~~~------~~~~~~~T~~gnp~~~aaa~a~L~~l~~----~~l~~~~ 374 (464)
T TIGR00699 311 LDDPPDMVTFSKKFQTAGY-F----FHD-PAFRPN------KPYRQFNTWMGDPSRALILREIIQEIKR----KDLLENV 374 (464)
T ss_pred CCCCCCEEEehhhhccCCc-c----ccc-hhccCC------CCcccccCCCCCHHHHHHHHHHHHHHHh----cCHHHHH
Confidence 97 99999999995 685 2 222 222111 1346999999999999999999999998 4566666
Q ss_pred HHHHHHHHHHHHHHHHcCC-CcceEE--eeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 757 RILRELWDLELIQQISSHR-TVQRVV--ALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 757 ~~lg~~l~~~l~~~l~~~p-~V~~Vr--G~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.++++|++++.++.+++| .|++|| |.|+|++|++.+. .....+...++++|++
T Consensus 375 ~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~------~~~~~i~~~~~~~Gvl 431 (464)
T TIGR00699 375 AHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDE------AKRDKLLKKARNNGVN 431 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCCH------HHHHHHHHHHHHCCcE
Confidence 6777777777777778899 799999 9999999999532 3567899999999986
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-60 Score=542.57 Aligned_cols=368 Identities=23% Similarity=0.280 Sum_probs=299.2
Q ss_pred CCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHH
Q 003472 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (817)
Q Consensus 374 ~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (817)
..|+++++++|. ++||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+..+....+++..+|+++|+
T Consensus 14 ~~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~ 86 (420)
T TIGR00700 14 TLPVFAARAEGA--ILEDVDGN----RLIDFASGIAVLNIGHS-HPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLN 86 (420)
T ss_pred CCCeeEEeeeee--EEEeCCCC----EEEECccCHHhccCCCC-CHHHHHHHHHHHHhccCccccccCChHHHHHHHHHH
Confidence 347889998886 59999999 99999999999999999 999999999999998876544466889999999999
Q ss_pred hhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCC-CC
Q 003472 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PY 532 (817)
Q Consensus 454 ~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~-~~ 532 (817)
+.+|...+++|+|++|||||||+|||+| |.|+++ .+||+|+++|||+|.+++++|+.. .+
T Consensus 87 ~~~p~~~~~~v~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~~~~~~~~~~ 147 (420)
T TIGR00700 87 RIAPGSGPKKSVFFNSGAEAVENAVKIA-RSYTGR------------------PGVVAFDHGFHGRTNMTMALTAKVMPY 147 (420)
T ss_pred HhCCCCCCCEEEEeCCcHHHHHHHHHHH-HHhcCC------------------CcEEEECCCcCCCcHHHHHhcCCCccc
Confidence 9887433579999999999999999999 788754 489999999999999999998753 22
Q ss_pred CCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCC
Q 003472 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (817)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (817)
+. +++++ .+++.+++.|++++... .. .......+++.+++.+...
T Consensus 148 ~~--------~~~~~--------~~~~~~~~~~~~~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~- 192 (420)
T TIGR00700 148 KS--------GFGPF--------APEVYRAPLPYPYRDGL--------LD----------KQLSTDGELAAARAIFVID- 192 (420)
T ss_pred cc--------CCCCC--------CCCcEEeCCCccccccc--------cc----------cchhHHHHHHHHHHHHHhh-
Confidence 22 11221 12345666665553210 00 0011122345677666411
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccC
Q 003472 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (817)
Q Consensus 613 ~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lg 692 (817)
.+++++||||+||| ||++|+++++++|+++|+++|++||++||+|||+|||||+|++|+++++|+.|||+|+||+++
T Consensus 193 --~~~~~iAavi~Epi-~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~lsK~l~ 269 (420)
T TIGR00700 193 --VGANNVAALVIEPV-QGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLITTAKSLA 269 (420)
T ss_pred --cCCCcEEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCEEEeecccc
Confidence 24679999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
|| +|+|++++++++++.+... .|++||++||++|++++|+|+++++ +++.++.+.+++++++++.++.+
T Consensus 270 ~G-~pig~v~~~~~i~~~~~~~------~~~~T~~~~pl~~aaa~a~l~~l~~----~~~~~~~~~~g~~l~~~L~~l~~ 338 (420)
T TIGR00700 270 DG-LPLSGVTGRAEIMDAPAPG------GLGGTYAGNPLACAAALAVLAIIES----EGLIERARQIGRLVTDRLTTLKA 338 (420)
T ss_pred CC-cceEEEEecHHHHhhcCCC------CcCCCCCcCHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHHHHh
Confidence 99 7999999999999988432 4889999999999999999999988 45566666777777777777778
Q ss_pred cCCCcceEEeeeeEEEEEEecCCC-CCCcchHHHHHHHHHHcCCC
Q 003472 773 SHRTVQRVVALGTLCAIELQAAGC-NAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 773 ~~p~V~~VrG~Glm~gIel~~~~~-~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++|.+.+|||.|+|++++|.++.. ..+.+....+...++++||+
T Consensus 339 ~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~ 383 (420)
T TIGR00700 339 VDPRIGDVRGLGAMIAVELVDPGTTEPDAGLAERIATAAHAAGLL 383 (420)
T ss_pred hCCCEEEeeccceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeE
Confidence 899999999999999999975421 11234567888889999985
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-60 Score=543.62 Aligned_cols=387 Identities=18% Similarity=0.140 Sum_probs=302.2
Q ss_pred HHHHHHHHHHHHHhhccchhhhcCcccc--cCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCC
Q 003472 336 KNIMLLAYSERIQRLCDMPKRAGELFWW--PFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGP 413 (817)
Q Consensus 336 ~~~l~~~~~~r~~~~~~~~~~~~~~l~~--p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~L 413 (817)
.+.+...+.++..++..+.+++.+.+.. |+.....++...|+++++++|.+ +||.||| +||||.+|+|+.+|
T Consensus 16 ~~~~~~~~~~~~~~S~~l~~ra~~~~p~g~~~~~~~~~~~~~p~~~~~a~G~~--v~D~DG~----~yiD~~~g~g~~~l 89 (453)
T PRK07046 16 LARERARFLEAHPRSRALAARAAQHLLGGVPMHWMNDWPTPFPLFVAEARGAR--FTDVDGH----RYDDFCLGDTGAMF 89 (453)
T ss_pred HHHHHHHHHhcChhhHHHHHHHHhhCCCCcccccccccCCCCCCeEEeeeeCE--EEeCCCC----EEEEeccccccccc
Confidence 3344556666777788888888887755 23332233334688999988865 9999999 99999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccc
Q 003472 414 DATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLV 493 (817)
Q Consensus 414 Gh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~ 493 (817)
||+ ||+|.+|+++|+++..+. ...++...+|||+|++.++ .++|+|+|||+||||.|||+| |.||+|
T Consensus 90 Gh~-~p~i~~Av~~q~~~~~~~---~~~~~~~~~lAe~l~~~~~---~~~v~F~nSGtEA~e~AlrlA-R~~TGr----- 156 (453)
T PRK07046 90 GHS-PAPVARALAEQARRGLTT---MLPSEDAAWVGEELARRFG---LPYWQVATTATDANRFVLRWA-RAVTGR----- 156 (453)
T ss_pred CCC-CHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHHHHhC---CCEEEEECCHHHHHHHHHHHH-HHhhCC-----
Confidence 999 999999999999986543 3568999999999999885 689999999999999999999 888764
Q ss_pred cccCCCccccccceEEEEEcCCccCCcccccccc--CCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhc
Q 003472 494 DFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ--APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (817)
Q Consensus 494 ~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~ 571 (817)
.+||.|+|+|||++.+++... +...++. .+. +. |. ...+....
T Consensus 157 -------------~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~-----~~~--g~----~~-~~~~~~~~---------- 201 (453)
T PRK07046 157 -------------PKILVFNGCYHGTVDDVFVDLVDGRPVQRP-----GLL--GQ----VH-DLTATTRV---------- 201 (453)
T ss_pred -------------CEEEEECCCCCCCcHHhHhhccCCCCCCCC-----CCC--CC----Cc-cccCceEe----------
Confidence 589999999999987766532 2111111 000 00 00 00011111
Q ss_pred ccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHh
Q 003472 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (817)
Q Consensus 572 ~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~ 651 (817)
++|||. +.+++.+. .+++||||+||| |+++|+++|+++||++||++|+
T Consensus 202 ------~~~nd~------------------~~l~~~l~-------~~~vAavi~EPi-~g~~G~~~p~~~fl~~lr~lc~ 249 (453)
T PRK07046 202 ------VEFNDL------------------AALEAALA-------DGDVAAVLAEPA-MTNIGMVLPEPGFHEALRELTR 249 (453)
T ss_pred ------eCCCCH------------------HHHHHHhC-------CCCeEEEEECCC-CCCCCCcCCCHHHHHHHHHHHH
Confidence 236654 45666663 367999999998 9999999999999999999999
Q ss_pred hcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCc---cceeecccCCCC
Q 003472 652 NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK---LKALLHGHSYSA 728 (817)
Q Consensus 652 ~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~---~~~~~h~~T~~g 728 (817)
+||++||+||||| | |+|..++++++||+|||+|+||+|||| +|+||+++++++++.+..... ...+.|++||+|
T Consensus 250 ~~g~llI~DEV~t-f-r~g~Gg~~~~~gv~PDi~t~gK~lggG-~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~g 326 (453)
T PRK07046 250 RYGTLLVIDETHT-I-SSGPGGYTRAHGLEPDFLVVGKPIAGG-VPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSA 326 (453)
T ss_pred HhCCEEEEEcccc-C-ccCCcchhHHhCCCccceeehhhhcCC-CcceeeeehHHHHHHHhhccccCCCCCceeCCCCcc
Confidence 9999999999999 5 677777888999999999999999999 799999999999998853110 123468999999
Q ss_pred CHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCC---------
Q 003472 729 HALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG--------- 799 (817)
Q Consensus 729 nPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~--------- 799 (817)
||++|||++++|++++++++ .++++.++++|++++.+++++++.+.+|||.|+|++++|.++. ...
T Consensus 327 npl~~aa~~a~L~~l~~~~~----~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~G~~~~i~~~~~~-~~~~~~~~~~~~ 401 (453)
T PRK07046 327 NALAMAAMRATLAEVMTEAA----YAHMLALAARLAAGLRAVIARHGLPWHVTRVGARVEFQFAPTP-PRNGAEAAAALD 401 (453)
T ss_pred cHHHHHHHHHHHHHHhcccH----HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcEEEEEEeCCC-CCCHHHHhcccC
Confidence 99999999999999988544 5555566666777787888889999999999999999996542 221
Q ss_pred cchHHHHHHHHHHcCCC
Q 003472 800 YCLIELFLYNFLTTGMH 816 (817)
Q Consensus 800 ~~~~~~~~~~~l~~Gv~ 816 (817)
.+....+...|+++||+
T Consensus 402 ~~~~~~~~~~~~~~Gv~ 418 (453)
T PRK07046 402 PELEAALHLYLLNRGVL 418 (453)
T ss_pred HHHHHHHHHHHHHCCCE
Confidence 23456678889999986
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-60 Score=542.40 Aligned_cols=360 Identities=21% Similarity=0.275 Sum_probs=295.4
Q ss_pred eEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhh
Q 003472 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (817)
Q Consensus 376 p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (817)
|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+..+..+.+++..+|+++|++.
T Consensus 23 p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~ 95 (421)
T PRK06777 23 DFYAERAENA--TLWDVEGR----EYIDFAAGIAVLNTGHR-HPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINAL 95 (421)
T ss_pred CeeEEeeecC--EEEeCCCC----EEEEcccCHHhhccCCC-CHHHHHHHHHHHhhcccccccccCChHHHHHHHHHHHh
Confidence 6788998886 59999999 99999999999999999 99999999999999887655446789999999999998
Q ss_pred cCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCC-CCCC
Q 003472 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (817)
Q Consensus 456 ~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~-~~~~ 534 (817)
+|.+.+++++|+||||||||+|||+| |+||+| ++||+|+++|||+|.+++++|+.. .++.
T Consensus 96 ~p~~~~~~~~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~s~t~~~~~~~~ 156 (421)
T PRK06777 96 APIDGPAKTAFFTTGAEAVENAVKIA-RAYTGR------------------PGVIAFGGAFHGRTLLTMALTGKVAPYKV 156 (421)
T ss_pred CCCCCCceEEEeCCcHHHHHHHHHHH-HHhhCC------------------CeEEEEcCCcCCccHHHHhhcCCCccccc
Confidence 87433579999999999999999999 788754 589999999999999999998752 2332
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
+ ++++ .+++.++++|+..++ . ....+.+.+++.+++.
T Consensus 157 ~--------~~~~--------~~~~~~~~~p~~~~~-----------~-------------~~~~~~~~l~~~~~~~--- 193 (421)
T PRK06777 157 G--------FGPF--------PGSIFHALYPNELHG-----------V-------------SVEEALSSVERLFKAD--- 193 (421)
T ss_pred C--------CCCC--------CCCcEEcCCCccccC-----------c-------------CHHHHHHHHHHHHHhc---
Confidence 1 1111 123445555543210 0 0112345677777531
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
.+++++||||+||+ |+++|+.++|++|+++|+++|++||++||+|||+|||||+|++|++++++++||++|+||++|||
T Consensus 194 ~~~~~iaavi~Epv-~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv~~sK~l~~G 272 (421)
T PRK06777 194 IAPDQVAAILLEPI-QGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLITMAKSLGGG 272 (421)
T ss_pred cCCCceEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEEeeehhhcCC
Confidence 24678999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+... .|++||++||++|++++++|++++++ ++.++.+.++++|.++|.++.+++
T Consensus 273 -~pigav~~~~~i~~~~~~~------~~~~T~~~~p~~~aaa~a~L~~~~~~----~l~~~~~~~g~~l~~~L~~l~~~~ 341 (421)
T PRK06777 273 -MPISAVVGRAEVMDAPAPG------GLGGTYAGNPLAVAAALAVLDVIAEE----KLCQRALILGAHLVEVLEKAKASC 341 (421)
T ss_pred -CceEEEEEcHHHHhccCCC------CCCCCCCcCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7999999999999988532 47899999999999999999999884 555566666777777777777789
Q ss_pred CCcceEEeeeeEEEEEEecCCC-CCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGC-NAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~-~~~~~~~~~~~~~~l~~Gv~ 816 (817)
|.+.+|||.|+|++++|.++.. ..+.+....+...++++||+
T Consensus 342 ~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~ 384 (421)
T PRK06777 342 PAIVDIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQALEEGLL 384 (421)
T ss_pred CCeEEecCceEEEEEEEecCccCCccHHHHHHHHHHHHhCCeE
Confidence 9999999999999999976421 11234567788889999985
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-61 Score=542.45 Aligned_cols=353 Identities=21% Similarity=0.279 Sum_probs=286.2
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||+ +||||++|+|+.++||+ ||+|++|+++|+++..+.......+++..+|+++|++
T Consensus 17 ~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~ 89 (412)
T TIGR02407 17 FPTVFEKAKGS--TLWDEDGK----EYIDFFAGAGALNYGHN-NPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNE 89 (412)
T ss_pred CCceEEecccC--EEEeCCCC----EEEEcccchhhccCCCC-CHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHH
Confidence 46788888886 59999999 99999999999999999 9999999999999876654334568999999999999
Q ss_pred hc--CCCCcceEEE-eCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCC
Q 003472 455 GV--GKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (817)
Q Consensus 455 ~~--~~~~~~~v~f-~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~ 531 (817)
.. |.+...+++| +||||||||+|||+| |.|++ |++||+|+++|||+|.+++++++...
T Consensus 90 ~~~~~~~~~~~~~f~~~sGseA~e~AlklA-r~~tg------------------r~~ii~~~~~yHG~t~~als~~~~~~ 150 (412)
T TIGR02407 90 IILKPRGLDYKVQFPGPTGTNAVESALKLA-RKVTG------------------RSNVVSFTNAFHGMTLGSLSVTGNRF 150 (412)
T ss_pred hccCccCCCceEEEeCCCchHHHHHHHHHH-hhhcC------------------CCeEEEECCCcCCchHHHHHhcCCcc
Confidence 74 3222236666 599999999999999 77764 45899999999999999999998655
Q ss_pred CCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcC
Q 003472 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (817)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (817)
++.. .++ +. .++.++|+|+... + ...+.+.+++.+++.
T Consensus 151 ~~~~--------~~~----~~----~~~~~~p~~~~~~----------------------~----~~~~~~~l~~~~~~~ 188 (412)
T TIGR02407 151 KRQG--------AGV----PL----SNVSRMPYDGYLG----------------------G----DVDTIAYFEKLLEDS 188 (412)
T ss_pred cccC--------CCC----CC----CCeEECCCCCccc----------------------c----chhHHHHHHHHHHhc
Confidence 4432 111 11 1234444442110 0 011245677777641
Q ss_pred CCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeeccccc
Q 003472 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLL 691 (817)
Q Consensus 612 ~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~L 691 (817)
. .+.+++||||+||| ||++|+++||++|+++|+++|++||++||+|||||||||||++|++++++++|||+|+||+|
T Consensus 189 ~--~~~~~~aavi~Epi-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~~~K~l 265 (412)
T TIGR02407 189 S--SGVDLPAAVILETV-QGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVCLSKSI 265 (412)
T ss_pred c--CCCCceEEEEeccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEEechhc
Confidence 0 12367999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHH-hcCcCchhcHHHHHHHHHHHHHHHHHH
Q 003472 692 TG-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKW-FKDPQTNHNIIPERRILRELWDLELIQ 769 (817)
Q Consensus 692 gg-Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~-l~~~~l~~~l~~~~~~lg~~l~~~l~~ 769 (817)
|| | +|+|++++++++ +.+.. ..|++||++||++|+++.++|++ +++ +++.++++.++++|++++.+
T Consensus 266 g~~G-~pigav~~~~~~-~~~~~------~~~~~T~~gnpl~~aaa~a~l~~~i~~----~~l~~~~~~~g~~l~~~l~~ 333 (412)
T TIGR02407 266 SGYG-LPLALTLIKPEL-DVWKP------GEHNGTFRGNNLAFVTATAALEYYWSD----DAFEKAVQRKSEIIQERLDR 333 (412)
T ss_pred cCCc-cceeEEEEchhh-hccCC------CccCCCCCccHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHHH
Confidence 99 8 899999999986 65532 25899999999999999999995 777 45666666777777777777
Q ss_pred HHHcCC-CcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 770 QISSHR-TVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 770 ~l~~~p-~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+++| .+.+|||.|+|++++|.+. +....+...++++||+
T Consensus 334 l~~~~~~~~~~vrg~Gl~~~l~l~~~------~~~~~~~~~~~~~Gv~ 375 (412)
T TIGR02407 334 IVAEYPELIKQVRGRGLMQGIECGDG------DLAGKIAKAAFENGLI 375 (412)
T ss_pred HHhhCCCceEeeecceeEEEEEecCh------HHHHHHHHHHHHCCCE
Confidence 778888 6899999999999999764 4567889999999985
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=589.84 Aligned_cols=364 Identities=17% Similarity=0.178 Sum_probs=292.1
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||| +||||++++ .++||+ ||+|++|+++|++++.+.+ .+.++...+|+++|++
T Consensus 567 ~p~~i~~g~G~--~l~D~dG~----~ylD~~~~~--~~lGh~-hp~v~~Ai~~q~~~l~~~~--~~~~~~~~elae~L~~ 635 (972)
T PRK06149 567 DPPQIERGWRH--HLFDMAGR----SYLDMVNNV--TVLGHG-HPRLAAAAARQWSLLNTNS--RFHYAAVAEFSERLAA 635 (972)
T ss_pred CCCeEEEeeee--EEEeCCCC----EEEECCCCc--cccCCC-CHHHHHHHHHHHHhccccc--cccCHHHHHHHHHHHH
Confidence 46688888885 59999999 999999985 479999 9999999999999876543 2467899999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
.+|.+ +++|+|+||||||||+|||+| |.++++ .+||+++++|||+|.+++++++....+.
T Consensus 636 ~~p~~-~~~v~f~~SGsEA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~ga~~~s~~~~~~~ 695 (972)
T PRK06149 636 LAPDG-LDTVFLVNSGSEANDLAIRLA-WAASGR------------------RDVVSVLEAYHGWTVATDAVSTSIADNP 695 (972)
T ss_pred hCCCC-cCEEEEeCCchHHHHHHHHHH-HHhcCC------------------CeEEEEeCCCCCcChhHhhhcCCccccc
Confidence 98754 689999999999999999999 788754 5899999999999999999876422111
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. ++.. ..+++..++.|+.+++. |++. +....|.+.+++.++...
T Consensus 696 ~----~~~~-----------~~~~v~~~~~p~~~~~~--------~~~~-----------~~~~~~~~~~~~~l~~~~-- 739 (972)
T PRK06149 696 Q----ALET-----------RPDWVHPVESPNTYRGR--------FRGA-----------DSAADYVRDVVAQLEELD-- 739 (972)
T ss_pred c----ccCC-----------CCCCeEEeCCCcccCCc--------CCCc-----------ccHHHHHHHHHHHHHHHh--
Confidence 0 1000 01234455666555321 2211 001123334444443211
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc-cchhhhcCCCCceeecccccCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~-~~a~e~~gv~PDivtlgK~Lgg 693 (817)
..++++||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||+ +|+++++||+|||+|+||+|||
T Consensus 740 ~~~~~iAavI~Epv-~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~gK~lg~ 818 (972)
T PRK06149 740 ASGRGLAGFICEPV-YGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGN 818 (972)
T ss_pred hcCCceEEEEEccc-ccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEecccccC
Confidence 24678999999998 999999999999999999999999999999999999999998 7899999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +|+||+++++++++.+.... .+.+||+|||++||||+|+|+++++ +++.++++.+|++|+++|.++.++
T Consensus 819 G-~Pl~av~~~~~i~~~~~~~~-----~~~sT~~gnP~~~aaala~L~~i~~----e~l~~~~~~~G~~l~~~L~~l~~~ 888 (972)
T PRK06149 819 G-HPLGAVITRREIAEALEAEG-----YFFSSTGGSPVSCRIGMAVLDVLRE----EKLQENARRVGDHLKARLEALADR 888 (972)
T ss_pred C-eeeEEEEEcHHHHhhhccCC-----cccCCCCCCHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9 79999999999999886421 3568999999999999999999998 567777777888888888888889
Q ss_pred CCCcceEEeeeeEEEEEEecCCCC--CCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCN--AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~--~~~~~~~~~~~~~l~~Gv~ 816 (817)
+|+|++|||+|+|+||||+++..+ .+.+....+...|+++||+
T Consensus 889 ~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl 933 (972)
T PRK06149 889 HPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVI 933 (972)
T ss_pred CCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeE
Confidence 999999999999999999864212 1234577889999999985
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-60 Score=543.61 Aligned_cols=368 Identities=17% Similarity=0.218 Sum_probs=280.1
Q ss_pred EEEeecCceeEEEeC-ccCccccceeeccccccccCCCCCCCHHHHH--HHHHHHHhccc--cCCCCCCChHHHHHHHHH
Q 003472 378 VIDSRCGENFSVYQD-QKNKFIGQQFDACASWWTQGPDATLQIELAR--DMGYTAARFGH--VMFPENVYEPALECAELL 452 (817)
Q Consensus 378 vi~~~~G~~~~l~D~-dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~--Ai~~q~~~~~~--~~~~~~~~~~~~eLae~L 452 (817)
++++++|. |+||. ||+ +||||++|+|+.++||+ ||+|++ |+++|++++.+ .....+.+++..+|+++|
T Consensus 29 ~i~~a~G~--~l~D~~dG~----~ylD~~~g~~~~~lGh~-~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l 101 (443)
T PRK08297 29 DLERSQGS--YLVDARTGR----RYLDMFTFFASSALGMN-HPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTF 101 (443)
T ss_pred EEEeccCC--EEEECCCCC----EeeecccCHhhhcCCCC-ChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHH
Confidence 46777775 59995 999 99999999999999999 999999 99999998653 222346789999999999
Q ss_pred HhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhcc----ccccccccCCCccccccceEEEEEcCCccCCccccccccC
Q 003472 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD----HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQA 528 (817)
Q Consensus 453 ~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~----~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~ 528 (817)
++..+.+.+++|+|+||||||||+|||+| |+|+.+ +|. ..++|++||+|+++|||+|.+++++++
T Consensus 102 ~~~~~p~~~~~v~f~~SGsEAve~AlKlA-r~~~~~~~~~~g~----------~~~~r~kii~~~~~yHG~t~~als~~~ 170 (443)
T PRK08297 102 ARVLGDPELPHLFFVDGGALAVENALKVA-FDWKSRKNEARGI----------DPALGTKVLHLRGAFHGRSGYTLSLTN 170 (443)
T ss_pred HhhcCCCCCCEEEEeCchHHHHHHHHHHH-HHHhhccccccCC----------CCCCCceEEEECCCcCCcchhhhhhcC
Confidence 99872223689999999999999999999 777642 221 002478999999999999999999997
Q ss_pred CCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHH
Q 003472 529 PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608 (817)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L 608 (817)
...++.. ++. .... .+++.|... .++.+.+ ..+...+...+++.+++.+
T Consensus 171 ~~~~~~~----~~~----~~~~---------~~~~~~~~~---------~~~~~~~-----~~~~~~~~~~~~~~~~~~i 219 (443)
T PRK08297 171 TDPRKTA----RFP----KFDW---------PRIDNPKLR---------FPLPGED-----LEEVEALEAEALAQARAAF 219 (443)
T ss_pred Ccccccc----cCC----CCCc---------cccCCCCCC---------CCCcccc-----cchhhHHHHHHHHHHHHHH
Confidence 5433221 111 0000 011112110 0000000 0001122233456778888
Q ss_pred hcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc
Q 003472 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG 688 (817)
Q Consensus 609 ~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg 688 (817)
++ +++++||||+||| ||+||+++||++||++||++|++||++||+|||||||||||++|+++++|++|||+|+|
T Consensus 220 ~~-----~~~~iAavI~EPi-~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g 293 (443)
T PRK08297 220 ER-----HPHDIACFIAEPI-QGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVAFG 293 (443)
T ss_pred Hh-----CCCcEEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEEec
Confidence 73 4689999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHH
Q 003472 689 KLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELI 768 (817)
Q Consensus 689 K~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~ 768 (817)
|++ |++++++++++.+.....-. ....|++||++||++|++|+++|++++++ ++.++++.++++|++++.
T Consensus 294 K~l-----~~~a~l~~~~i~~~~~~~~~-~~~~~~~T~~gnpl~~aaa~a~L~~l~~~----~l~~~~~~~g~~l~~~L~ 363 (443)
T PRK08297 294 KKT-----QVCGIMAGRRVDEVEDNVFA-VSSRINSTWGGNLVDMVRARRILEVIEED----GLVENAARQGEYLLARLE 363 (443)
T ss_pred ccc-----cccceecchHHHHhhhhhcc-CccccCCCCCccHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHH
Confidence 997 45677777776543311000 01248999999999999999999999884 555666677777777787
Q ss_pred HHHHcCCCcc-eEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 769 QQISSHRTVQ-RVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 769 ~~l~~~p~V~-~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++.+++|.+. +|||.|+|++|+|.+. +....+.+.++++||+
T Consensus 364 ~l~~~~~~~~~~vrg~G~~~~i~~~~~------~~~~~~~~~l~~~Gvl 406 (443)
T PRK08297 364 ELAAEFPAVVSNVRGRGLMCAFDLPTT------ADRDEVIRRLWEEGVL 406 (443)
T ss_pred HHHHHCCCcceeeeccceEEEEEecCH------HHHHHHHHHHHHCCEE
Confidence 7778899776 9999999999999653 3567788999999985
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-60 Score=539.67 Aligned_cols=366 Identities=21% Similarity=0.264 Sum_probs=298.8
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+.......+++..+||++|++
T Consensus 23 ~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~ 95 (443)
T PRK08360 23 YPLVPVKAENA--KVWDIEGN----EYIDFLSDAAVQNVGHN-NPRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIE 95 (443)
T ss_pred CCceEEeccee--EEEECCCC----EEEEccccHhhcccCCC-CHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHH
Confidence 47788888775 59999999 99999999999999999 9999999999999988766544568999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCC-CCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~-~~~ 533 (817)
.+|.+ +++|+|+||||||||+|||+| |+||+| .+||++.++|||+|.+++++++.. .++
T Consensus 96 ~~p~~-~~~v~f~~sGsEAve~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~a~s~~~~~~~~~ 155 (443)
T PRK08360 96 IAPGD-NPKVSFGLSGSDANDGAIKFA-RAYTKR------------------RKILSYLRSYYGSTYGAMSLTGLDFPVR 155 (443)
T ss_pred hCCCC-CCEEEEcCCHHHHHHHHHHHH-HHhcCC------------------CeEEEEeCCcCCcCHHHHHhcCCCcccc
Confidence 98754 579999999999999999999 788754 589999999999999999998742 222
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
.. +++ .+++.++++|+.++.. |.+ +..++...+.+.+++.+++.
T Consensus 156 ~~--------~~~---------~~~~~~~~~~~~~~~~--------~~~---------~~~~~~~~~~~~~~~~l~~~-- 199 (443)
T PRK08360 156 AL--------VGE---------LSDVHYIPYPDCYRCP--------FGK---------EPGSCKMECVEYIKEKFEGE-- 199 (443)
T ss_pred cC--------CCC---------CCCcEEEeCCcccccc--------ccC---------chhhhHHHHHHHHHHHHHhc--
Confidence 21 111 1234556666554311 110 01122233456677777631
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
..++++||||+||+ |+.+|++++|++|+++|+++|++||++||+|||||||||+|++|+++++|++||++|+||++|+
T Consensus 200 -~~~~~iAAvi~eP~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitlsK~l~~ 277 (443)
T PRK08360 200 -VYAEGVAALFAEPI-QGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITLGKPLGG 277 (443)
T ss_pred -cCCCCeEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEEEecccccC
Confidence 23578999999997 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +|+|++++++++++.+.. ..|++||++||++|++++++|+++++++ +.++++.++++|++++.++.++
T Consensus 278 G-~pigav~~~~~i~~~~~~------~~~~~T~~~~p~~~aaa~a~l~~l~~~~----l~~~~~~~g~~l~~~L~~l~~~ 346 (443)
T PRK08360 278 G-LPISATIGRAEIMDSLPP------LAHAFTLSGNPVASAAALAVIEEIEEKN----LLKRAEKLGNYTKKRLEEMKKK 346 (443)
T ss_pred C-ceeEEEEEcHHHHhhhcC------CCCCCCCCcCHHHHHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHHHHHHh
Confidence 9 899999999999998853 2488999999999999999999998844 5555666667777777777778
Q ss_pred CCCcceEEeeeeEEEEEEecCCCC--CCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCN--AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~--~~~~~~~~~~~~~l~~Gv~ 816 (817)
+|.|++|||+|+|++|||+++... .++.....+...++++|++
T Consensus 347 ~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 391 (443)
T PRK08360 347 HELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLI 391 (443)
T ss_pred CCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeE
Confidence 999999999999999999865311 2234567888999999985
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-60 Score=530.66 Aligned_cols=321 Identities=21% Similarity=0.257 Sum_probs=267.6
Q ss_pred CCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHH
Q 003472 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (817)
Q Consensus 374 ~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (817)
..|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+... .+.+++..+|+++|+
T Consensus 5 ~~~~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~-~~~~~~~~~la~~l~ 76 (364)
T PRK04013 5 RKRLRLVRGEGI--YVWDSQGR----RYLDLIAGIGVNVLGHN-HPEWVEEMSEQLEKLVVAGP-MFEHEEKEEMLEELS 76 (364)
T ss_pred CCCccEEEeecC--EEEECCCC----EEEEcccChhhccCCCC-CHHHHHHHHHHHHhcCCccC-CcCCHHHHHHHHHHH
Confidence 346788888886 59999999 99999999999999999 99999999999999876543 467999999999999
Q ss_pred hhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCC
Q 003472 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (817)
Q Consensus 454 ~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~ 533 (817)
++.+ .++++|+||||||||+|||+| |.++++ .+||+++++|||+|.+++++++.+.++
T Consensus 77 ~~~~---~~~v~~~~SGseA~e~Alkla-r~~~gr------------------~~Ii~~~~syHG~t~~~ls~~~~~~~~ 134 (364)
T PRK04013 77 KWVN---YEYVYMGNSGTEAVEAALKFA-RLYTGR------------------KEIIAMTNAFHGRTMGALSATWKPKYR 134 (364)
T ss_pred hhcC---CCEEEEeCchHHHHHHHHHHH-HHHhCC------------------CEEEEECCccccCchhhccCCCCcccc
Confidence 9885 579999999999999999999 777653 589999999999999999999876555
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
.+ +.+.+ +++.+++ |||. +.+++.+.
T Consensus 135 ~~--------~~p~~--------~~~~~~~----------------~~d~------------------~~l~~~i~---- 160 (364)
T PRK04013 135 ED--------FEPLV--------PGFKHIP----------------FNDV------------------EAAKEAIT---- 160 (364)
T ss_pred cC--------CCCCC--------CCcEEec----------------CCCH------------------HHHHHHhc----
Confidence 43 11110 1222222 4432 33555553
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
+++||||+||+ ||+||++++|++||++||++|++||++||+||||||| |||++|+++++|++|||+|+||+|||
T Consensus 161 ----~~~aAvivEpi-~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~a~~~~gv~PDiv~~gK~lgg 234 (364)
T PRK04013 161 ----KETAAVIFEPI-QGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVEPDIVTMGKGIGN 234 (364)
T ss_pred ----CCcEEEEEcCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchhHHHhcCCCCCEEEecccccC
Confidence 47999999998 9999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +|+||++.++++.. ..|++||+|||++||||+++|++++++++.+++ +.+ | .++ .
T Consensus 235 G-~P~~a~~~~~~~~~----------~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~----~~~---l----~~l--~ 290 (364)
T PRK04013 235 G-VPVSLTLTNFDVER----------GKHGSTFGGNPLACKAVAVTLRILRRERLVEKA----GEK---F----IEI--K 290 (364)
T ss_pred C-ceeEEEEecccccC----------CCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHH----HHH---H----HHh--c
Confidence 9 89999999987621 258999999999999999999999996555554 332 2 122 2
Q ss_pred CCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.|.|++|||+|+|+||||.++ ...+.+.|+++|++
T Consensus 291 ~~~v~~vRG~Gl~~gve~~~~--------~~~i~~~~~~~Gll 325 (364)
T PRK04013 291 GERVVTTRGRGLMIGIVLKKP--------VGKYVEELQNRGYL 325 (364)
T ss_pred cCcceeeeeCcEEEEEEeCCc--------HHHHHHHHHhCCcE
Confidence 378999999999999999643 35688999999985
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-60 Score=541.89 Aligned_cols=367 Identities=22% Similarity=0.296 Sum_probs=297.8
Q ss_pred eEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhh
Q 003472 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (817)
Q Consensus 376 p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (817)
|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+..+..+.+++..+||++|++.
T Consensus 37 ~~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~ 109 (451)
T PRK06918 37 PTFAQSANGA--LVTDVDGN----QYIDFAGAIGTINVGHS-HPKVKEALHKQVDQYIHTGFNVMMYEPYIELAEKLAAL 109 (451)
T ss_pred CceEEecccc--EEEeCCCC----EEEEcCCchhhcCCCCC-CHHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHh
Confidence 5788888886 59999999 99999999999999999 99999999999999877654446789999999999999
Q ss_pred cCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCC-CCCC
Q 003472 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (817)
Q Consensus 456 ~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~-~~~~ 534 (817)
+|.++.++|+|+||||||||+|||+| |+||+| .+||+|+++|||+|.+++++++.. .++.
T Consensus 110 ~p~~~~~~v~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~ls~~~~~~~~~~ 170 (451)
T PRK06918 110 APGSFDKKVLFLNSGAEAVENAVKIA-RKYTKR------------------QGIISFSRGFHGRTLMTMTMTSKVKPYKF 170 (451)
T ss_pred CCCCCCCEEEEcCCcHHHHHHHHHHH-HHHhCC------------------CcEEEECCCcCccchhhhhhcCCCccccc
Confidence 87543369999999999999999999 888754 589999999999999999998742 2332
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
+ ++++ .+++.++|+|+.+++.. . ...+...+.+.+.+++.++..
T Consensus 171 ~--------~~~~--------~~~~~~~~~~~~~~~~~--------~---------~~~~~~~~~~~~~~~~~~~~~--- 214 (451)
T PRK06918 171 G--------FGPF--------APEVYKAPFPYEYRRPE--------G---------LTEEQYDDFMIEEFKNFFISE--- 214 (451)
T ss_pred c--------CCCC--------CCCcEEcCCCccccccc--------c---------CchHHHHHHHHHHHHHHHHhh---
Confidence 1 1111 12345666665543210 0 001122333445566555321
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
..++++||||+||+ ||+||+++|+++|+++|+++|++||++||+|||+|||||+|++|++++++++||++++||++++|
T Consensus 215 ~~~~~iAavi~EPi-~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~t~sK~l~~G 293 (451)
T PRK06918 215 VAPETIAAVVMEPV-QGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLITVSKSLGAG 293 (451)
T ss_pred cCCCceEEEEECcc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEEeeehhhcCC
Confidence 24578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+.. ..|++||++||++|++|+++|+++++ +++.++++.+++++.+++.++.+++
T Consensus 294 -~pig~v~~~~~i~~~~~~------~~~~~T~~g~~l~~aaa~a~l~~i~~----~~~~~~~~~~g~~l~~~l~~l~~~~ 362 (451)
T PRK06918 294 -VPISGVIGRKEIMDESAP------GELGGTYAGSPLGCAAALAVLDIIEK----ENLNDRAIELGKVVMNRFEEMKNKY 362 (451)
T ss_pred -CccEEEEEcHHHHhccCC------CCcCcCCCcCHHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 899999999999998843 24889999999999999999999988 4555566677777777777777788
Q ss_pred CCcceEEeeeeEEEEEEecCCC--CCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGC--NAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~--~~~~~~~~~~~~~~l~~Gv~ 816 (817)
|.+.+|||.|+|+++++.++.. ..+.+....+...++++||+
T Consensus 363 ~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvl 406 (451)
T PRK06918 363 NCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLL 406 (451)
T ss_pred CCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeE
Confidence 9999999999999999974321 11224577888899999985
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-60 Score=519.72 Aligned_cols=376 Identities=20% Similarity=0.262 Sum_probs=305.9
Q ss_pred hccchhhhcCcc----cccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHH
Q 003472 350 LCDMPKRAGELF----WWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDM 425 (817)
Q Consensus 350 ~~~~~~~~~~~l----~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai 425 (817)
+.++.+++.+.+ +.|....+.++ ..|+++++++|.+ +||+||| +|||++.+|+...|||+ ||.|++|+
T Consensus 7 S~~l~~~A~~~~pGGvnspvra~~~v~-~~P~fi~~g~Ga~--l~DvDGn----~YIDy~~~~Gp~ilGH~-~p~V~~Av 78 (432)
T COG0001 7 SEALFERAKKVIPGGVNSPVRAFKSVG-GYPIFIERGKGAY--LTDVDGN----EYIDYVLGWGPLILGHA-HPAVVEAV 78 (432)
T ss_pred hHHHHHHHhhhCCCCCCccccccCCCC-CCCeeEEeccCCe--EEeCCCC----EeeehhccCcccccCCC-CHHHHHHH
Confidence 334445555544 33444433332 4799999999975 9999999 99999999999999999 99999999
Q ss_pred HHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCcccccc
Q 003472 426 GYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCI 505 (817)
Q Consensus 426 ~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~ 505 (817)
++|+++.... +.+++..+++|+.|++.+|. .++|.|+|||+||+..|||+| |.||+|
T Consensus 79 ~~~l~~G~~f---g~Pte~Ei~~Aell~~~~p~--~e~vrfvnSGTEAtmsAiRlA-Ra~TgR----------------- 135 (432)
T COG0001 79 QEQLERGLSF---GAPTELEVELAELLIERVPS--IEKVRFVNSGTEATMSAIRLA-RAYTGR----------------- 135 (432)
T ss_pred HHHHHhcCCC---CCCCHHHHHHHHHHHHhcCc--ccEEEEecchhHHHHHHHHHH-HHhhCC-----------------
Confidence 9999997543 35789999999999999985 689999999999999999999 899875
Q ss_pred ceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcch
Q 003472 506 ELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDE 585 (817)
Q Consensus 506 r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~ 585 (817)
.+||.|+|+|||+....+--.+...-... .|. ....|......+. -++|||.
T Consensus 136 -~kIikF~G~YHG~~D~~lv~agsg~~t~g--------------~p~--------s~Gvp~~~a~~ti---~~~yND~-- 187 (432)
T COG0001 136 -DKIIKFEGCYHGHSDSLLVKAGSGAATLG--------------SPS--------SPGVPADVAKHTL---VLPYNDL-- 187 (432)
T ss_pred -CeEEEEcCCCCCCccHHHhhcCcCcccCC--------------CCC--------CCCCChhhhccEE---EecCCCH--
Confidence 59999999999999887654432111000 010 0112222222222 2468986
Q ss_pred hhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeec
Q 003472 586 IFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG 665 (817)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TG 665 (817)
+.+++++++ .+++|||||+||| +|..|+++|.++|+++||+||++||++||+|||+||
T Consensus 188 ----------------~al~~~~~~-----~g~~IAaVIvEPv-~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTG 245 (432)
T COG0001 188 ----------------EALEEAFEE-----YGDDIAAVIVEPV-AGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITG 245 (432)
T ss_pred ----------------HHHHHHHHH-----cCCcEEEEEeccc-cCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhh
Confidence 678888884 5789999999998 999999999999999999999999999999999999
Q ss_pred cccccccchhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcC
Q 003472 666 FWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD 745 (817)
Q Consensus 666 fGRtG~~~a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~ 745 (817)
| |.+..+++++|||+||+.|+||.+||| +|+||+.+++++|+.+... .+..+++||+|||++++|++++|+.+++
T Consensus 246 F-R~~~gGaq~~~gi~PDlttlGKiIGGG-lP~ga~gGr~eiM~~~~p~---g~vyqaGT~sgnplamaAG~atl~~l~~ 320 (432)
T COG0001 246 F-RVALGGAQGYYGVEPDLTTLGKIIGGG-LPIGAFGGRAEIMEQLAPL---GPVYQAGTLSGNPLAMAAGLATLEELMT 320 (432)
T ss_pred c-ccCCcccccccCcCcchhhhhhhhcCC-cceeeeccHHHHHhhhCCC---CCccccCCCCCcHHHHHHHHHHHHHHHh
Confidence 9 999999999999999999999999999 8999999999999987543 3567999999999999999999999987
Q ss_pred -cCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCc--------chHHHHHHHHHHcCCC
Q 003472 746 -PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY--------CLIELFLYNFLTTGMH 816 (817)
Q Consensus 746 -~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~--------~~~~~~~~~~l~~Gv~ 816 (817)
++.++++.+.+++| .+++.+.++++.+...|.+.|.|+.|-|.+.+ ...| +....|++.++++||+
T Consensus 321 ~~~~y~~l~~~~~~L----~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~-~~n~~da~~sd~~~~~~~~~~~l~~GV~ 395 (432)
T COG0001 321 EEGVYERLDALGERL----AEGLRAAAERHGIPLTVNRVGSMFGIFFTEEG-VRNYADAKRSDVERFAKFFHHLLNRGVY 395 (432)
T ss_pred cccHHHHHHHHHHHH----HHHHHHHHHHhCCCeEEeeecceEEEEecCCC-CCCHHHHHhhchHHHHHHHHHHHhCCcc
Confidence 45677776655554 55778888899888999999999999998854 4444 4677888999999997
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-60 Score=535.81 Aligned_cols=347 Identities=22% Similarity=0.305 Sum_probs=289.7
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+... ...+++..+|+++|++
T Consensus 22 ~~~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~la~~L~~ 93 (408)
T PRK04612 22 RQVVLERGQGS--RVWDDQGR----EYLDLAAGIAVCGLGHN-DPDLVAALTEQAGKLWHTSN-VFYSAPPLKLAEELVT 93 (408)
T ss_pred CCceEEEeeeC--EEEECCCC----EEEEcCccHhhccCCCC-CHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHh
Confidence 46788898886 59999999 99999999999999999 99999999999999876643 3568999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
..|. .++|+|++|||||||+|||+| |+|+..+|. .++|.+||+|+++|||+|.+++++++.+.++.
T Consensus 94 ~~~~--~~~v~f~~sGseA~e~AlklA-r~~~~~~g~-----------~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~ 159 (408)
T PRK04612 94 ASRF--AEKVFLCNSGTEANEAAIKLV-RKWASSQGR-----------PADKRVIVTFRGSFHGRTLAAVTATAQPKYQE 159 (408)
T ss_pred hCCC--CCEEEEcCchHHHHHHHHHHH-HHHHHhhCC-----------CCCCcEEEEECCCcCCccHHHHHhcCCccccc
Confidence 8763 479999999999999999999 788754432 03577999999999999999999998765554
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. + .+. | +++..+ +|+|. +.+++.++
T Consensus 160 ~-----~---~~~---~-----~~~~~~----------------~~~d~------------------~~l~~~~~----- 184 (408)
T PRK04612 160 G-----Y---EPL---P-----GGFRYV----------------DFNDV------------------EALEAAMA----- 184 (408)
T ss_pred C-----C---CCC---C-----CCceEc----------------CCCCH------------------HHHHHhhC-----
Confidence 2 1 100 0 111122 24442 34555553
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
++++||||+||+ |++||+++++++|+++|+++|++||++||+|||||||||+|++|+++++++.||++|+||+||||
T Consensus 185 --~~~~aavi~eP~-~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~~K~l~~G 261 (408)
T PRK04612 185 --GGDVAAVMLEPI-QGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLAKALGGG 261 (408)
T ss_pred --CCCEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEEcchhcCC
Confidence 368999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+... .|++||++||++|++++++|++++++ ++.++++.++++|++++.++.+++
T Consensus 262 -~piga~~~~~~~~~~~~~~------~~~~t~~~~p~~~aaa~a~L~~~~~~----~l~~~~~~~g~~l~~~l~~l~~~~ 330 (408)
T PRK04612 262 -FPIGAMLAGPKVAETMQFG------AHGTTFGGNPLAAAVARVALRKLASP----QIAANVARQSAALRAGLEALNAEF 330 (408)
T ss_pred -CceEEEEECHHHHhhhcCC------CcCCCCCCCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHhhC
Confidence 8999999999998887532 58899999999999999999999884 455556666677777777777889
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.|++|||+|+|++|+|.++. .+....+...++++|++
T Consensus 331 ~~i~~vrg~Gl~~~i~~~~~~----~~~a~~i~~~l~~~Gvl 368 (408)
T PRK04612 331 GVFAQVRGRGLMLGAVLAPAH----AGQAGAILDLAAEHGLL 368 (408)
T ss_pred CCeeeeeccceEEEEEecCch----hhHHHHHHHHHHHCCeE
Confidence 999999999999999997531 14567788899999985
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-60 Score=534.88 Aligned_cols=350 Identities=21% Similarity=0.303 Sum_probs=280.9
Q ss_pred CCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHH
Q 003472 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (817)
Q Consensus 374 ~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (817)
..|+++++++|. |+||.||| +|||+++|+|+.++||+ ||+|++|+++|+++.... ...++...+|+++|+
T Consensus 34 ~~p~~i~~a~G~--~l~D~dG~----~yiD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~---~~~~~~~~~la~~L~ 103 (433)
T PRK00615 34 ITPPIVSSASGD--IFIDSLGK----TFIDFCGSWGSLIHGHS-HPKICDAIQQGAERGTSY---GLTSEQEILFAEELF 103 (433)
T ss_pred CCCceEEEeeeC--EEEECCCC----EEEEcccchhccccCCC-CHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHH
Confidence 357889998886 59999999 99999999999999999 999999999999986532 356899999999999
Q ss_pred hhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCc---cccccccCCC
Q 003472 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT---LGAMEAQAPS 530 (817)
Q Consensus 454 ~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t---~galslt~~~ 530 (817)
+.+|.+ .++|+|++|||||||+|||+| |+||+| .+||+|+++|||+| .+++++++..
T Consensus 104 ~~~~~~-~~~v~f~~SGsEA~e~AiklA-r~~tgr------------------~~ii~~~~~yHG~td~~~~~~~~~~~~ 163 (433)
T PRK00615 104 SYLGLE-DHKIRFVSSGTEATMTAVRLA-RGITGR------------------SIIIKFLGCYHGHADTLLQGISFSETS 163 (433)
T ss_pred HhCCCC-cCEEEEeCchHHHHHHHHHHH-HHhhCC------------------CEEEEEcCccCCCCcccCcccccCCCC
Confidence 988743 479999999999999999999 888754 58999999999998 6777777532
Q ss_pred CCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhc
Q 003472 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610 (817)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~ 610 (817)
....+ ...++ .++. +. .+. ++|||. +.+++.|++
T Consensus 164 ~~~~~------~~~~~--~~~~----~~--~~~--------------~~~~d~------------------~~l~~~l~~ 197 (433)
T PRK00615 164 LDTLT------HLVDT--DLAH----PL--TLS--------------LPYNDF------------------QIFQTVMNS 197 (433)
T ss_pred cCcCC------CCCCC--CCCC----CC--eEe--------------CCCCCH------------------HHHHHHHHh
Confidence 11100 00000 0000 00 000 235543 456777763
Q ss_pred CCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccc
Q 003472 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKL 690 (817)
Q Consensus 611 ~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~ 690 (817)
.++++||||+||| |+++|+++|+++|+++|+++|++||++||+||||||| |+|.+|+++++|++|||+|+||+
T Consensus 198 -----~~~~~aavI~Epv-~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~ga~~~~gv~PDi~~~gK~ 270 (433)
T PRK00615 198 -----LGHRVAGVIFEPI-CANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVKPDITVYGKI 270 (433)
T ss_pred -----cCCceEEEEECCC-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHhHHHHhcCCCCCeEEEccc
Confidence 2468999999998 9999999999999999999999999999999999999 99999999999999999999999
Q ss_pred cCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHH
Q 003472 691 LTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (817)
Q Consensus 691 LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~ 770 (817)
|||| +|+|++++++++++.+... ..+.|++||++||++|||++++|+++++++++++ .+.++++|++++.+.
T Consensus 271 lggG-~p~~av~~~~~i~~~~~~~---~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~~----~~~~g~~l~~~l~~~ 342 (433)
T PRK00615 271 LGGG-LPAAAVVAHKSIMDHLAPE---GTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQ----LSTLEQNFLSPIEEM 342 (433)
T ss_pred ccCC-cceeeeeecHHHHhhhcCC---CCcccCCCCcccHHHHHHHHHHHHHHhcccHHHH----HHHHHHHHHHHHHHH
Confidence 9999 7999999999999988532 2346889999999999999999999988554444 455555666666666
Q ss_pred HHc--CCCcceEEeeeeEEEEEEecCCCC-------CCcchHHHHHHHHHHcCCC
Q 003472 771 ISS--HRTVQRVVALGTLCAIELQAAGCN-------AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 771 l~~--~p~V~~VrG~Glm~gIel~~~~~~-------~~~~~~~~~~~~~l~~Gv~ 816 (817)
+++ +| +.++| .|+|++|+|.++... .+.+....|...++++||+
T Consensus 343 ~~~~g~~-v~~~r-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 395 (433)
T PRK00615 343 IRSQGFP-VSLVR-YGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVY 395 (433)
T ss_pred HHHcCCC-eEEEe-eceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCee
Confidence 665 45 88889 999999999865311 0124566899999999986
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-60 Score=538.85 Aligned_cols=353 Identities=21% Similarity=0.271 Sum_probs=283.3
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||| +||||++|+|+.+|||+ ||+|.+|+++|+++..+.......+++..+|+++|++
T Consensus 21 ~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~ 93 (425)
T PRK09264 21 FPVVFDKAKGS--WLYDEDGK----EYIDFFAGAGALNYGHN-NPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEE 93 (425)
T ss_pred CCccEEeeecC--EEEeCCCC----EeeecccchhhccCCCC-CHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHH
Confidence 46788888886 59999999 99999999999999999 9999999999999876654444568999999999999
Q ss_pred hc--CCCCcceEEE-eCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCC
Q 003472 455 GV--GKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (817)
Q Consensus 455 ~~--~~~~~~~v~f-~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~ 531 (817)
.+ +.+...+++| +||||||||+|||+| |+|++ |.+||+|+++|||+|.+++++|+...
T Consensus 94 ~~~~~~~~~~~~~f~~~sGseA~e~AlklA-r~~tg------------------r~~ii~~~~~yHG~t~~~ls~~~~~~ 154 (425)
T PRK09264 94 TILKPRGLDYKVQFTGPTGTNAVEAALKLA-RKVTG------------------RTNIVAFTNGFHGMTLGSLAVTGNSH 154 (425)
T ss_pred hhcCCcCCCceEEEeCCCHHHHHHHHHHHH-HHhcC------------------CCeEEEECCccCCccHHHHHhcCCcc
Confidence 64 3222236766 489999999999999 78865 35899999999999999999998654
Q ss_pred CCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcC
Q 003472 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (817)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (817)
++.. +++ +. .++.++|+|+.+++ + ....+.+++.|++.
T Consensus 155 ~~~~--------~~~----~~----~~~~~~p~~~~~~~------------------------~--~~~~~~l~~~l~~~ 192 (425)
T PRK09264 155 KRQG--------AGV----PL----NNVTRMPYDGYFGG------------------------D--VDTLAYLEKLLEDS 192 (425)
T ss_pred cccC--------CCC----CC----CCeEEeCCCCcccc------------------------c--hhHHHHHHHHHHhc
Confidence 4432 111 11 23455665543210 0 01135677777642
Q ss_pred CCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeeccccc
Q 003472 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLL 691 (817)
Q Consensus 612 ~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~L 691 (817)
. .+.+++||||+||| ||+||++++|++||++|+++|++||++||+|||||||||||++|+++++|+.|||+|+||+|
T Consensus 193 ~--~~~~~~aavi~Epv-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t~~K~l 269 (425)
T PRK09264 193 S--SGVDLPAAVIVETV-QGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTLSKSI 269 (425)
T ss_pred c--CCCCceEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEEEecccc
Confidence 0 12357999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHH-HHhcCcCchhcHHHHHHHHHHHHHHHHHH
Q 003472 692 TG-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSI-KWFKDPQTNHNIIPERRILRELWDLELIQ 769 (817)
Q Consensus 692 gg-Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L-~~l~~~~l~~~l~~~~~~lg~~l~~~l~~ 769 (817)
|+ | +|+|++++++++ +.+.. ..|++||++||++|++++++| ++++++ ++.++++.++++|++++.+
T Consensus 270 ~~~G-~pigav~~~~~i-~~~~~------~~~~~T~~gnp~~~aaa~a~l~~~~~~~----~l~~~~~~~g~~l~~~l~~ 337 (425)
T PRK09264 270 SGYG-LPMALVLIKPEL-DVWKP------GEHNGTFRGNNLAFVTATAALEEYWSDD----AFEKEVKAKGELVRERLEE 337 (425)
T ss_pred CCCc-cceEEEEEchhh-hccCC------CccCCCCCCCHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHH
Confidence 99 7 899999999997 44422 248899999999999999999 677674 4555555666666666666
Q ss_pred HHHcCCC-cceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 770 QISSHRT-VQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 770 ~l~~~p~-V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+++|. +.+|||.|+|++++|.+. +....+...++++||+
T Consensus 338 l~~~~~~~~~~vrg~Gl~~~i~l~~~------~~~~~l~~~~~~~Gv~ 379 (425)
T PRK09264 338 IAAKYPGLGAEVRGRGMMQGIDFGDG------ELAGKIAAEAFENGLI 379 (425)
T ss_pred HHHhCCCceecceecccEEEEEecCh------HHHHHHHHHHHHCCCE
Confidence 6677885 589999999999999754 4667889999999985
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-60 Score=533.07 Aligned_cols=323 Identities=23% Similarity=0.280 Sum_probs=267.0
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. ++||.||+ +||||+||+|++++||+ ||+|++|+++|++++.+... ...+++..+|+++|.+
T Consensus 18 ~~~~~~~~~G~--~~~d~dG~----~~lD~~sg~~~~~lGh~-~p~v~~a~~~q~~~~~~~~~-~~~~~~~~~la~~l~~ 89 (395)
T PRK03715 18 PDIVFTHGKGS--WLYDHNGK----RYLDFIQGWAVNCLGHC-NPGMVEALAAQAEKLINPSP-AFYNEPMAKLAGLLTQ 89 (395)
T ss_pred CCceEEeeecC--EEEECCCC----EEEECCcChhhccCCCC-CHHHHHHHHHHHHhcccccc-cccCHHHHHHHHHHhh
Confidence 46788888886 59999999 99999999999999999 99999999999999876543 3568999999999998
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
..+ .++++|++||+||||+|||+| |.|+++. . ++|.+||+++++|||+|.+++++++...++.
T Consensus 90 ~~~---~~~v~f~~SGseA~e~Aik~a-r~~~~~~-~------------~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~ 152 (395)
T PRK03715 90 HSC---FDKVFFANSGAEANEGAIKLA-RKWGRKH-K------------NGAYEIITFDHSFHGRTLATMSASGKPGWDT 152 (395)
T ss_pred ccC---CCEEEEeCCcHHHHHHHHHHH-HHHhhcc-C------------CCCcEEEEECCCcCCChHHHHhhcCCccccc
Confidence 754 579999999999999999999 6776432 1 4678999999999999999999998654443
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. + .+.. .++.+ ++|+|. +.+++.++
T Consensus 153 ~-----~---~~~~--------~~~~~----------------~~~~d~------------------~~l~~~l~----- 177 (395)
T PRK03715 153 I-----F---APQV--------PGFPK----------------AELNDI------------------ASVEKLIT----- 177 (395)
T ss_pred C-----C---CCCC--------CCcee----------------eCCchH------------------HHHHHHcC-----
Confidence 2 1 0000 01111 113432 44555553
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
++++|||+||+ |++||+++||++|+++|+++|++||++||+|||||||||||++|+++++|++|||+|+||+||||
T Consensus 178 ---~~~aavi~Epv-~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t~gK~lg~G 253 (395)
T PRK03715 178 ---DKTVAVMLEPV-QGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTLGKGIGGG 253 (395)
T ss_pred ---CCceEEEEeCC-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCceeeehhhhhCC
Confidence 36899999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|+++++++++. +.. ..|++||+|||++||+++++|++++++++ .++++.++++|++++.++.+++
T Consensus 254 -~p~~av~~~~~i~~-~~~------~~~~~T~~g~pl~~aaala~L~~l~~~~l----~~~~~~~g~~l~~~L~~l~~~~ 321 (395)
T PRK03715 254 -VPLAALLAKAEVAV-FEA------GDQGGTYNGNPLMTAVGVAVISQLLAPGF----LEGVRARGEYLKEKLLELSEER 321 (395)
T ss_pred -cceEEEEEcccccc-ccC------CCcCCCCCCCHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHHhhcC
Confidence 89999999999863 321 14899999999999999999999988544 4555556666666776666777
Q ss_pred CCcceEEeeeeEEEEEEecC
Q 003472 775 RTVQRVVALGTLCAIELQAA 794 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~ 794 (817)
+ +.+|||.|+|++|+|.++
T Consensus 322 ~-i~~vrG~Glm~~i~l~~~ 340 (395)
T PRK03715 322 G-LEGERGEGLLRALLLGKD 340 (395)
T ss_pred C-cCeEEcceeEEEEEecCc
Confidence 7 788999999999999753
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-59 Score=536.73 Aligned_cols=348 Identities=18% Similarity=0.260 Sum_probs=276.5
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||| +|||+++|+|+.+|||+ ||+|.+|+++|++++.+. ...++...+||++|++
T Consensus 81 ~p~~~~~a~G~--~l~D~dG~----~yiD~~~g~g~~~lGh~-~p~v~~av~~ql~~~~~~---~~~~~~~~~lAe~l~~ 150 (474)
T PLN02482 81 QPIVFDRVKGS--YAWDVDGN----EYIDYVGSWGPAIIGHA-DDEVLAALAETMKKGTSF---GAPCLLENVLAEMVID 150 (474)
T ss_pred CCeeEEEeeeC--EEEECCCC----EEEEecccccccccCCC-CHHHHHHHHHHHhhCCCC---CCCCHHHHHHHHHHHH
Confidence 47889998886 59999999 99999999999999999 999999999999987643 3468999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccc--cCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA--QAPSPY 532 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galsl--t~~~~~ 532 (817)
.+|. +++|+|+|||+||||.|||+| |+||+| .+||.|+++|||++...+.. ++...+
T Consensus 151 ~~p~--~~~v~f~~SGsEA~e~AlklA-R~~tgr------------------~~Ii~~~g~YHG~~~~~~~~~~~~~~~~ 209 (474)
T PLN02482 151 AVPS--VEMVRFVNSGTEACMGVLRLA-RAYTGR------------------EKIIKFEGCYHGHADSFLVKAGSGVATL 209 (474)
T ss_pred hCCC--CCEEEEeCChHHHHHHHHHHH-HHhcCC------------------CEEEEECCccCCCcchhhhhcCCCcccc
Confidence 8874 689999999999999999999 888764 58999999999987554333 322111
Q ss_pred CCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCC
Q 003472 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (817)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (817)
.. ++.. + . | ....++.+ -++|||. +.+++.|++
T Consensus 210 ~~----~~~~--g--~--~---------~~~~~~~~--------~~~~nd~------------------~~l~~~l~~-- 242 (474)
T PLN02482 210 GL----PDSP--G--V--P---------KAATSATL--------TAPYNDL------------------EAVKKLFEA-- 242 (474)
T ss_pred CC----CCCC--C--C--C---------CCCCCCeE--------EecCCCh------------------HHHHHHHHh--
Confidence 10 0100 0 0 0 00001111 0236654 456777763
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccC
Q 003472 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (817)
Q Consensus 613 ~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lg 692 (817)
+++++||||+||| |+++|+++|+++||++|+++|++||++||+||||||| |+|.+|+++++|++|||+||||+||
T Consensus 243 ---~~~~iAavI~Epv-~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~~gv~PDi~t~gK~lg 317 (474)
T PLN02482 243 ---NKGEIAAVILEPV-VGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGITPDLTTLGKVIG 317 (474)
T ss_pred ---CCCceEEEEECCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcchHhHHhCCCCCEEEecchhh
Confidence 4678999999998 9999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
|| +|+||+++++++++.+... ..+.|++||+|||++|||++++|+++++++++++ .+.++++|++++.++..
T Consensus 318 gG-~Pigav~g~~ei~~~~~~~---~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~----~~~~g~~l~~~L~~l~~ 389 (474)
T PLN02482 318 GG-LPVGAYGGRREIMEMVAPA---GPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEY----LDKITKKLIQGILEAGK 389 (474)
T ss_pred CC-CceEEEEEcHHHHHhhccC---CCcccccCcchhHHHHHHHHHHHHHHhccCHHHH----HHHHHHHHHHHHHHHHH
Confidence 99 7999999999999998532 2357999999999999999999999988555444 55566666667777766
Q ss_pred cC--CCc-ceEEeeeeEEEEEEecCCC-------CCCcchHHHHHHHHHHcCCC
Q 003472 773 SH--RTV-QRVVALGTLCAIELQAAGC-------NAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 773 ~~--p~V-~~VrG~Glm~gIel~~~~~-------~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++ |.+ .++|| |++++|.++.. ..+.+....+...|+++||+
T Consensus 390 ~~g~~~~~~~v~g---~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~ 440 (474)
T PLN02482 390 KAGHEMCGGYISG---MFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVY 440 (474)
T ss_pred hcCCCEEEcccce---EEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeE
Confidence 64 543 56666 88999986421 01223567889999999986
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-59 Score=523.46 Aligned_cols=343 Identities=22% Similarity=0.308 Sum_probs=282.9
Q ss_pred EeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCC
Q 003472 380 DSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG 459 (817)
Q Consensus 380 ~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~ 459 (817)
++++|. |+||.||+ +||||++|+|+.++||+ ||+|++|+++|++++.+... .+.+++..+|+++|++..+
T Consensus 2 ~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~la~~l~~~~~-- 71 (382)
T PLN00144 2 VSGKGC--KLYDVEGK----EYLDMAAGIAVNALGHG-DPDWVKAVAEQAGTLAHVSN-VYHTIPQVELAKRLVASSF-- 71 (382)
T ss_pred eeeecc--EEEeCCCC----EEEECCcCHHhccCCCC-CHHHHHHHHHHHHhcCCccc-cccCHHHHHHHHHHHhcCC--
Confidence 456665 69999999 99999999999999999 99999999999999877653 3458999999999999875
Q ss_pred CcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCC
Q 003472 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (817)
Q Consensus 460 ~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~ 539 (817)
.++|+|++|||||||+|||+| |.|++++|...+. .....|.+||+|+++|||+|.+++++++...++.+
T Consensus 72 -~~~v~f~~sGseA~e~AlklA-r~~~~~~~~~~~~-----~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~---- 140 (382)
T PLN00144 72 -ADRVFFCNSGTEANEAAIKFA-RKYQRVRAPDKKD-----PAASSATEFVSFSNSFHGRTLGALALTSKEQYRTP---- 140 (382)
T ss_pred -CCeEEEeCCcHHHHHHHHHHH-HHHHhccCCCCcc-----ccccccceEEEECCCcccccHHHHhcCCCcccccc----
Confidence 579999999999999999999 8888765431000 00012689999999999999999999986655442
Q ss_pred CccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 003472 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (817)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~ 619 (817)
+ .+. .+++.++ +|||+ +.+++.++ .++
T Consensus 141 ~----~~~--------~~~~~~~----------------~~~d~------------------~~l~~~~~-------~~~ 167 (382)
T PLN00144 141 F----EPL--------MPGVTFV----------------EYGNL------------------EAARKLIQ-------KGK 167 (382)
T ss_pred C----CCC--------CCCeEEe----------------CCCCH------------------HHHHHhcC-------CCC
Confidence 1 110 0122222 24543 45665553 358
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCCCCcce
Q 003472 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLA 699 (817)
Q Consensus 620 iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggGy~Pls 699 (817)
++|||+||+ |+.||+.+++++|+++|+++|++||++||+|||+|||||+|++|+++++++.|||+||||+|+|| +|+|
T Consensus 168 ~aavi~eP~-q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PDi~t~sK~l~~G-~pig 245 (382)
T PLN00144 168 TAAVFVEPV-QGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTLAKPLAGG-LPIG 245 (382)
T ss_pred eEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCCEEEecccccCC-cceE
Confidence 999999998 99999999999999999999999999999999999999999999999999999999999999999 7999
Q ss_pred EEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcce
Q 003472 700 ATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR 779 (817)
Q Consensus 700 Avl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~ 779 (817)
++++++++++.+... .|++||++||++|++++++|++++++ ++.++.+.+++++++.+.++++++|.+.+
T Consensus 246 ~v~~~~~~~~~~~~~------~~~~T~~~~pl~~aaa~a~l~~i~~~----~~~~~~~~~g~~l~~~l~~~~~~~~~~~~ 315 (382)
T PLN00144 246 AVLVTEKVASAINPG------DHGSTFAGGPLVCNAALAVLDKISKP----GFLASVAKKGEYLRELLRRKLGGNPHVKE 315 (382)
T ss_pred EEEEcHHHHhccCCC------CCCCCCCCCHHHHHHHHHHHHHHhhc----hHHHHHHHHHHHHHHHHHHHHhhCCCcee
Confidence 999999999988532 48899999999999999999999884 45555566666667777778888999999
Q ss_pred EEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 780 VVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 780 VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
|||.|+|++++|.. ....+...++++||+
T Consensus 316 vrg~G~~~~l~l~~--------~~~~~~~~~~~~Gv~ 344 (382)
T PLN00144 316 VRGVGLLVGIQLDV--------PAGPLVDACRDSGLL 344 (382)
T ss_pred eecCceEEEEEecC--------ccHHHHHHHHHCCeE
Confidence 99999999999932 235688899999985
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-59 Score=523.55 Aligned_cols=344 Identities=24% Similarity=0.318 Sum_probs=285.5
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. ++||.||+ +||||+||+|+++|||+ ||+|++|+++|++++.+... .+.+++..+|+++|++
T Consensus 17 ~~~~~~~~~G~--~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~L~~ 88 (397)
T TIGR03246 17 APFIPVRGEGS--RVWDQQGK----EYIDFAGGIAVNALGHA-HPELVKALIEQADKLWHIGN-GYTNEPVLRLAKKLVD 88 (397)
T ss_pred CCceEEEeecC--EEEeCCCC----EEEECCcCHhhccCCCC-CHHHHHHHHHHHHhcccccC-ccCCHHHHHHHHHHHh
Confidence 46788898886 59999999 99999999999999999 99999999999998654432 3568899999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
+.+ .++++|++|||||||+|||+| |.|+.+++. ++|.+||+++++|||+|.+++++++.+.++.
T Consensus 89 ~~~---~~~~~f~~SGseA~e~Alk~a-r~~~~~~~~------------~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~ 152 (397)
T TIGR03246 89 ATF---ADKVFFCNSGAEANEAALKLA-RRYALDKHG------------ADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQ 152 (397)
T ss_pred hCC---CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCCEEEEECCCcCCccHHHHHhcCCccccc
Confidence 886 479999999999999999999 788754422 4678999999999999999999998655443
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. +.++ + +++.++ +|||. +.+++.+.
T Consensus 153 ~--------~~~~--~------~~~~~~----------------~~~d~------------------~~l~~~l~----- 177 (397)
T TIGR03246 153 G--------FAPL--P------GGIKHA----------------PYNDL------------------AAAKALIS----- 177 (397)
T ss_pred C--------CCCC--C------CceEEe----------------CCCCH------------------HHHHHHhc-----
Confidence 2 0111 0 122222 25553 45666653
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
++++|||+||+ +++||+++||++||++|+++|++||++||+|||||||||+|++|+++++|++||++|+||+||||
T Consensus 178 ---~~~aavi~Epi-~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~t~~K~lggG 253 (397)
T TIGR03246 178 ---DKTCAVIVEPI-QGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDILTSAKALGGG 253 (397)
T ss_pred ---cCeEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEEEeehhhhCC
Confidence 36999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+... .|++||++||++|++|+++|++++++++.++ .+.++++|.++|.++..++
T Consensus 254 -~pigav~~~~~i~~~~~~~------~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~----~~~~~~~l~~~L~~l~~~~ 322 (397)
T TIGR03246 254 -FPIGAMLTTTEIAAHLKVG------THGTTYGGNPLACAVAGKVLDLVNTPELLAG----VKQRHDLFVDGLEKINARY 322 (397)
T ss_pred -cceeEEEEcHHHHHhccCC------CcCCCCCCCHHHHHHHHHHHHHHhhccHHHH----HHHHHHHHHHHHHHHHhcC
Confidence 7999999999999988532 4889999999999999999999987544444 4555555555666666678
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+.+|||.|+|+++++.++. .+....+...++++|++
T Consensus 323 ~~~~~vrg~G~~~~i~~~~~~----~~~~~~~~~~l~~~Gv~ 360 (397)
T TIGR03246 323 NVFSEIRGKGLLIGAVLTEAY----QGKAKQFVNAAAEEGVI 360 (397)
T ss_pred CCeEeeecCceEEEEEEcCch----hhHHHHHHHHHHHCCeE
Confidence 989999999999999997641 13567788899999985
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-58 Score=526.79 Aligned_cols=367 Identities=16% Similarity=0.189 Sum_probs=278.0
Q ss_pred EEeecCceeEEEeC-ccCccccceeeccccccccCCCCCCCHHHH--HHHHHHHHhcccc--CCCCCCChHHHHHHHHHH
Q 003472 379 IDSRCGENFSVYQD-QKNKFIGQQFDACASWWTQGPDATLQIELA--RDMGYTAARFGHV--MFPENVYEPALECAELLL 453 (817)
Q Consensus 379 i~~~~G~~~~l~D~-dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~--~Ai~~q~~~~~~~--~~~~~~~~~~~eLae~L~ 453 (817)
+++++|. |+||. ||| +||||++|+|+.++||+ ||+|+ +|+++|++++.+. ......+++..+++++|+
T Consensus 23 ~~~a~G~--~l~D~~dG~----~ylD~~~g~~~~~lGh~-~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~l~ 95 (431)
T TIGR03251 23 LDRSRGS--VLVDARDGR----RYLDMFSFFASMALGMN-HPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDTFA 95 (431)
T ss_pred EEeccCC--EEEECCCCC----ChhhcccChhhcCCCCC-ChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHH
Confidence 5777775 59996 999 99999999999999999 99999 9999999987532 223467889999999999
Q ss_pred hhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhcc----ccccccccCCCccccccceEEEEEcCCccCCccccccccCC
Q 003472 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD----HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP 529 (817)
Q Consensus 454 ~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~----~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~ 529 (817)
+.++.+.+++|+|+||||||||+|||+| |+||++ +|. + .++|++||+|+++|||+|.+++++++.
T Consensus 96 ~~~~~~~~~~v~f~~sGsEAve~AlklA-r~~t~~~~~~~g~-----~-----~~~~~~ii~~~~~yHG~t~~als~~~~ 164 (431)
T TIGR03251 96 RVLGDPALPHLFFIEGGALAVENALKTA-FDWKSRHNQARGI-----P-----AALGTQVLHLRQAFHGRSGYTLSLTNT 164 (431)
T ss_pred HhcCCCCcCEEEEeCCcHHHHHHHHHHH-HHHhhcchhhcCC-----C-----CCCCceEEEECCccCCcchhhhhccCC
Confidence 9863223789999999999999999999 788754 232 0 012678999999999999999999986
Q ss_pred CCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHh
Q 003472 530 SPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLL 609 (817)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~ 609 (817)
..++.. +.+.+.. .+++.|+.. + +|+..+ . .+...+...+++.+++.++
T Consensus 165 ~~~~~~--------~~~~~~~---------~~~~~p~~~-~--------~~~~~~--~---~~~~~~~~~~l~~~~~~~~ 213 (431)
T TIGR03251 165 DPRKTA--------RFPKFDW---------PRIDNPKLT-F--------PLDAPN--L---DQVIALEEEALRQARAAFA 213 (431)
T ss_pred cccccc--------CCCCCCC---------ccCCCCccc-C--------Cccccc--c---chhhHHHHHHHHHHHHHHH
Confidence 433332 0111000 112222110 0 010000 0 0011222334567777776
Q ss_pred cCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeeccc
Q 003472 610 QNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK 689 (817)
Q Consensus 610 ~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK 689 (817)
. .+++|||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||++|+++++|++|||+|+||
T Consensus 214 ~-----~~~~iAavivEPv-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~~gK 287 (431)
T TIGR03251 214 E-----RPHDIACFIAEPI-QGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFGK 287 (431)
T ss_pred h-----CCCcEEEEEEecc-ccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEEecc
Confidence 3 4679999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHH
Q 003472 690 LLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQ 769 (817)
Q Consensus 690 ~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~ 769 (817)
++ |+++++.++++.+.....-. ....|++||+|||++|++|+++|++++++++.+ +++.++++|.++|.+
T Consensus 288 ~~-----~~~g~~~~~~i~~~~~~~~~-~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~----~~~~~g~~l~~~L~~ 357 (431)
T TIGR03251 288 KT-----QVCGIMAGRRVDEVADNVFA-VPSRLNSTWGGNLVDMVRATRILEIIEEERLVD----NARVQGAHLLARLHE 357 (431)
T ss_pred cC-----ccceEEecchHHHhhhhccc-CccccCCCCCCCHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHH
Confidence 95 66777887765443210000 112488999999999999999999998854444 455566666667777
Q ss_pred HHHcCC-CcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 770 QISSHR-TVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 770 ~l~~~p-~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+++| .+.+|||.|+|++|+|.+. +....+...++++||+
T Consensus 358 l~~~~~~~i~~vrg~G~~~~i~~~~~------~~~~~~~~~l~~~Gvl 399 (431)
T TIGR03251 358 LAAEFPHLVSNPRGRGLMCAFDLPST------ADRDEVIRQLYREGVL 399 (431)
T ss_pred HHHhCccceecccccceeEEEEeCCH------HHHHHHHHHHHhCCeE
Confidence 777888 8999999999999999643 3566788999999985
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-57 Score=509.71 Aligned_cols=344 Identities=24% Similarity=0.291 Sum_probs=284.6
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||+ +||||++|+|+++|||+ ||+|++|+++|++++.+... .+.+++..+|+++|++
T Consensus 21 ~~~~~~~~~G~--~~~d~dG~----~~lD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~la~~l~~ 92 (406)
T PRK12381 21 APFIPVRGEGS--RLWDQQGK----EYIDFAGGIAVNALGHA-HPALREALNEQASKFWHTGN-GYTNEPVLRLAKKLID 92 (406)
T ss_pred CCceEEEeecC--EEEeCCCC----EEEEcCcCHhhccCCCC-CHHHHHHHHHHHhhcccccC-ccCCHHHHHHHHHHHh
Confidence 36788888886 59999999 99999999999999999 99999999999998765432 4568889999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
+.+ .++|+|++||+||||+|||+| |+++..++. ++|.+||+++++|||+|.+++++++.+.++.
T Consensus 93 ~~~---~~~v~~~~sGseA~e~Alk~a-r~~~~~~~~------------~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~ 156 (406)
T PRK12381 93 ATF---ADRVFFCNSGAEANEAALKLA-RKYAHDRYG------------SHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQ 156 (406)
T ss_pred hCC---CCeEEEcCCcHHHHHHHHHHH-HHHHhhcCC------------CCCCeEEEECCCcCCcchhHHhhcCCccccc
Confidence 876 479999999999999999999 778754332 4578999999999999999999998655443
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. +++. + +++.+ ++|||. +.+++.+.
T Consensus 157 ~--------~~~~--~------~~~~~----------------~~~~d~------------------~~l~~~l~----- 181 (406)
T PRK12381 157 D--------FAPL--P------PDIRH----------------AAYNDL------------------NSASALID----- 181 (406)
T ss_pred C--------CCCC--C------CCeeE----------------eCCCCH------------------HHHHHhcc-----
Confidence 2 1111 0 11111 124553 44565553
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
++++|||+||+ +++||+++||++|+++|+++|++||++||+|||||||||+|++|+++++++.||++|+||+||||
T Consensus 182 ---~~~aaviiEPv-~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi~t~sK~l~gG 257 (406)
T PRK12381 182 ---DQTCAVIVEPI-QGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLTTAKALGGG 257 (406)
T ss_pred ---CCeeEEEEeCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCEEEehhhhhCC
Confidence 37999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+.. ..|++||++||++|++++++|++++++++ .++.+.++++|.++|.++..++
T Consensus 258 -~~ig~~~~~~~~~~~~~~------~~~~~t~~~~pl~~aaa~a~l~~l~~~~~----~~~~~~~~~~l~~~L~~l~~~~ 326 (406)
T PRK12381 258 -FPIGAMLTTEKCASVMTV------GTHGTTYGGNPLASAVAGKVLELINTPEM----LNGVKQRHDWFVERLNTINARY 326 (406)
T ss_pred -CceEEEEEcHHHHhhcCC------CCCCCCCCCCHHHHHHHHHHHHHHhhccH----HHHHHHHHHHHHHHHHHHHhhC
Confidence 799999999999998853 25889999999999999999999987544 4445555566666666665678
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+.+|||.|+|+++++.++. .+....+...++++||+
T Consensus 327 ~~~~~vrg~Gl~~~~~l~~~~----~~~~~~~~~~l~~~Gv~ 364 (406)
T PRK12381 327 GLFSEIRGLGLLIGCVLNAEY----AGKAKQISQEAAKAGVM 364 (406)
T ss_pred CCEEEEecCeEEEEEEecCch----hhHHHHHHHHHHHCCcE
Confidence 888999999999999997641 13557788899999985
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-58 Score=472.08 Aligned_cols=366 Identities=19% Similarity=0.270 Sum_probs=302.5
Q ss_pred CCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHH
Q 003472 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (817)
Q Consensus 374 ~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (817)
+.|+.|.+++|.| +||.+|+ +||||++. +...||+ ||+|++|...|+...... ..+.|+...++|+.|.
T Consensus 28 sDP~kivRaq~QY--mfDE~g~----~yLDCInN--VaHvghc-hp~VV~A~~kQmat~~tN--~RFlhd~lv~cA~~l~ 96 (452)
T KOG1403|consen 28 SDPLKIVRAQGQY--MFDEEGT----RYLDCINN--VAHVGHC-HPEVVRAGAKQMATISTN--NRFLHDELVQCARTLT 96 (452)
T ss_pred CCchhhehhccce--eeccCcc----cHHHHhhh--hhhcccC-CHHHHHHHHHHHhHhccc--chhhHHHHHHHHHHHh
Confidence 5688899999986 9999999 99999984 3457999 999999999999986543 3567899999999999
Q ss_pred hhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCC
Q 003472 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (817)
Q Consensus 454 ~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~ 533 (817)
..+|. ++.++|+|||||||+.|||+| |.||++ .++|.++.+|||.....|.+|- ..|.
T Consensus 97 stlPe--Lsvc~F~NSGSEANDLALRLA-R~ftkh------------------qDvItldHAYHGHl~s~mE~SP-YKF~ 154 (452)
T KOG1403|consen 97 STLPE--LSVCFFVNSGSEANDLALRLA-RNFTKH------------------QDVITLDHAYHGHLQSVMEVSP-YKFN 154 (452)
T ss_pred hcCCC--ceEEEEecCCchhhHHHHHHH-Hhhccc------------------CceEEEechhccceeeeeeccc-eecc
Confidence 98885 889999999999999999999 888876 3899999999999888888872 1222
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
.+ .-...| +-++..|-|+.|+.... +-.+++. +....|.+.++++++...
T Consensus 155 ~g----------~~v~kp-----d~VHVAPcPDvyrGK~r---~~~~~~a-----------~~~~~Yad~vk~I~~d~~- 204 (452)
T KOG1403|consen 155 QG----------GGVAKP-----DYVHVAPCPDVYRGKFR---DKMYPDA-----------DMGALYADPVKEICQDQL- 204 (452)
T ss_pred CC----------CCcCCC-----ceeEecCCccccccccc---cccCCcc-----------cchhhhhhHHHHHHHHHH-
Confidence 11 111112 23566678888876432 1112221 223456677777776521
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc-cchhhhcCCCCceeecccccC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACYGKLLT 692 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~-~~a~e~~gv~PDivtlgK~Lg 692 (817)
..+..|||+|.|.+ |+.||.+.||++|++.+.+..+.+|.++|+||||+||||.|+ +|+++.|++.|||+|+||.+|
T Consensus 205 -~~g~gvAAfiAEsl-QSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmgKpmG 282 (452)
T KOG1403|consen 205 -AKGQGVAAFIAESL-QSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMGKPMG 282 (452)
T ss_pred -hcCCcHHHHHHHHH-HhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccchheecccCC
Confidence 24567999999997 999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
|| .|+++|+.+++|.++|.... ..+-+||+|||++||+++|+++++++ ++|.+++.++|++|...|.++..
T Consensus 283 NG-hPVa~VattkeIA~Af~atg----v~YFNTyGGnPVsCAv~laVm~v~e~----E~Lq~ha~~vG~~L~~lL~~~k~ 353 (452)
T KOG1403|consen 283 NG-HPVAAVATTKEIAQAFHATG----VEYFNTYGGNPVSCAVGLAVMRVCED----ENLQEHAQQVGEKLEVLLRRLKQ 353 (452)
T ss_pred CC-CeeeEEeccHHHHHHhcccc----ceehhccCCCchhHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHhh
Confidence 99 89999999999999996532 34668999999999999999999999 77888888899988887777778
Q ss_pred cCCCcceEEeeeeEEEEEEecCCCCCCc--chHHHHHHHHHHc
Q 003472 773 SHRTVQRVVALGTLCAIELQAAGCNAGY--CLIELFLYNFLTT 813 (817)
Q Consensus 773 ~~p~V~~VrG~Glm~gIel~~~~~~~~~--~~~~~~~~~~l~~ 813 (817)
+|++|+||||.||++||+|+++...+.+ +.+.+.++++.+.
T Consensus 354 kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~ 396 (452)
T KOG1403|consen 354 KHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKEL 396 (452)
T ss_pred hccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHh
Confidence 9999999999999999999999777765 5667777777664
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-56 Score=509.82 Aligned_cols=351 Identities=20% Similarity=0.273 Sum_probs=289.2
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||+ +||||+||+++.++||+ ||+|++|+++|++++.+.+. .+.++...+|+++|++
T Consensus 57 ~p~~~~~a~G~--~l~d~dG~----~ylD~~sg~~~~~~Gh~-~p~v~~ai~~ql~~~~~~~~-~~~~~~~~~la~~L~~ 128 (474)
T PLN02624 57 IPVVFSRAKGS--RIWDPEGK----KYLDFLSAYSAVNQGHC-HPKIIKALTEQAEKLTLSSR-AFYNDKFPEFAEYLTS 128 (474)
T ss_pred CCceEEeeeeC--EEEECCCC----EEEEcccchhcccCCCC-CHHHHHHHHHHHHhcCCccc-ccCCHHHHHHHHHHHh
Confidence 36788898886 49999999 99999999999999999 99999999999999887653 4678999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhc-cccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSF-DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~-~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~ 533 (817)
++| .++++|+|||+||||+|||+| |.|+. ++|. ..+|.+||++.++|||+|.+++++++...++
T Consensus 129 ~~~---~~~~~f~~SGseA~e~AlklA-r~~~~~~~g~-----------~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~ 193 (474)
T PLN02624 129 MFG---YDMVLPMNTGAEGVETAIKLA-RKWGYEKKGI-----------PKNEAIIVSCCGCFHGRTLAAISMSCDNEAT 193 (474)
T ss_pred hcC---CCeEEEeCChHHHHHHHHHHH-HHHHHhhcCC-----------CCCCcEEEEECCCcCCCCHHHhhcCCCcccc
Confidence 986 579999999999999999999 67642 1221 0246789999999999999999999765443
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
.. +++.. +++.++ +|+|. +.+++.|+.
T Consensus 194 ~~--------~~~~~--------~~~~~~----------------~~~d~------------------~~l~~~l~~--- 220 (474)
T PLN02624 194 RG--------FGPLL--------PGHLKV----------------DFGDL------------------DALEKIFEE--- 220 (474)
T ss_pred cc--------CCCCC--------CCceEe----------------CCCCH------------------HHHHHHHHh---
Confidence 32 11111 111122 24543 456677763
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
.+++++|||+||+ |+++|+++|+++||++|+++|++||++||+|||||||||+|++|+++++++.||++|+||++||
T Consensus 221 --~~~~iaaiiiEpv-~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~lsK~lgg 297 (474)
T PLN02624 221 --DGDRIAAFLFEPI-QGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVILGKALGG 297 (474)
T ss_pred --CCCCEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCEEEecccccC
Confidence 3578999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
|++|+|++++++++++.+.. ..|++||++||++|+++.++|++++++ ++.++...++++|++++.++.++
T Consensus 298 G~~pigav~~~~~i~~~~~~------~~~~~T~~g~pl~~aaa~aaLe~l~~~----~l~~~~~~~~~~l~~~L~~l~~~ 367 (474)
T PLN02624 298 GVIPVSAVLADKDVMLCIKP------GEHGSTFGGNPLASAVAMAALQVVQDE----KLAERSAKLGQELRDQLQKIQKQ 367 (474)
T ss_pred CCCcceeeeecHHHHhHhcc------CCcCCCCCCCHHHHHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999887742 258899999999999999999999874 45556666777777777777678
Q ss_pred CC-CcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 774 HR-TVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p-~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+| .+.+|||.|+|++|+|..+. .+......+.+.++++||+
T Consensus 368 ~~~~i~~vrg~G~~~~i~l~~~~--~~~~~a~~~~~~L~e~GV~ 409 (474)
T PLN02624 368 FPKLIKEVRGRGLLNAVVLNSPK--LGPVSAYDVCLKLKERGLL 409 (474)
T ss_pred CCCceEEEEeeEEEEEEEecCCC--cChHHHHHHHHHHHhCCeE
Confidence 88 48899999999999996541 1123456788889999985
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-53 Score=483.81 Aligned_cols=344 Identities=19% Similarity=0.246 Sum_probs=263.6
Q ss_pred CCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHH
Q 003472 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (817)
Q Consensus 374 ~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (817)
..|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|+++.... ...++...+|+++|+
T Consensus 29 ~~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~~~---~~~~~~~~~la~~l~ 98 (431)
T PRK06209 29 LAPGFIQRGSGA--HVWDVDGN----EYIEYGMGLRAVGLGHA-YPPVVEAVREALQDGCNF---TRPSAIELDAAESFL 98 (431)
T ss_pred CCCeEEEeccCC--EEEeCCCC----EEEEccccccchhcCCC-CHHHHHHHHHHHHhCcCC---CCCCHHHHHHHHHHH
Confidence 457889998886 59999999 99999999999999999 999999999999987532 234566678999999
Q ss_pred hhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEE-cCCccCCccccccccCCCCC
Q 003472 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL-KGSYHGDTLGAMEAQAPSPY 532 (817)
Q Consensus 454 ~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~-~gsyHG~t~galslt~~~~~ 532 (817)
+.+|. .++|+|+||||||||+|||+| |+||++ .+|+.+ .++|||...+....+. .
T Consensus 99 ~~~p~--~~~v~f~~sGseA~e~AlklA-r~~tgr------------------~~i~~~~~~~~h~~~~~~~g~~~---~ 154 (431)
T PRK06209 99 ELIDG--ADMVKFCKNGSDATSAAVRLA-RAYTGR------------------DLVARCADHPFFSTDDWFIGTTP---M 154 (431)
T ss_pred HhCCc--cceEEEecCHHHHHHHHHHHH-HHHhCC------------------CeEEEeccCccccccccccccCC---C
Confidence 98874 579999999999999999999 888764 488998 7888874221111000 0
Q ss_pred CCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCC
Q 003472 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (817)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (817)
.. + .+. .. ...+. .++|||+ +.+++.|++
T Consensus 155 ~~----------~----~~~-----~~--~~~~~----------~~~~~d~------------------~~l~~~l~~-- 183 (431)
T PRK06209 155 SA----------G----IPA-----SV--SALTV----------TFRYNDI------------------ASLEALFED-- 183 (431)
T ss_pred CC----------C----CCh-----hH--hcccc----------ccCCCCH------------------HHHHHHHHh--
Confidence 00 0 000 00 00000 0235553 557777763
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccC
Q 003472 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (817)
Q Consensus 613 ~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lg 692 (817)
.++++||||+||+ +|+ .||++||++|+++|++||++||+|||||||++++ +++.+++|++|||+|+||+||
T Consensus 184 ---~~~~~aavi~Epv-~g~----~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~-~g~~~~~gv~PDi~t~gK~lg 254 (431)
T PRK06209 184 ---HPGRIACVILEPA-TAD----EPQDGFLHEVRRLCHENGALFILDEMITGFRWHM-RGAQKLYGIVPDLSCFGKALG 254 (431)
T ss_pred ---CCCCEEEEEEccc-cCC----CCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc-chhhHHhCCCcceeeehhhhc
Confidence 3568999999998 876 7789999999999999999999999999998753 445557899999999999999
Q ss_pred CCCCcceEEEechHHHhh--hcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDS--FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~--~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~ 770 (817)
|| +|+|++++++++++. +........+.|++||++||++||+++++|++|+++++.+++ ..++++|++.+.++
T Consensus 255 gG-~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~----~~~g~~l~~~L~~~ 329 (431)
T PRK06209 255 NG-FAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERL----HEQGAKLAAGVNEA 329 (431)
T ss_pred CC-cccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHHHHHH
Confidence 99 799999999999997 321111245679999999999999999999999985555555 45555556666666
Q ss_pred HHcCCCcceEEeeeeEEEEEEecCCCC--CCcchHHHHHHHHHHcCCC
Q 003472 771 ISSHRTVQRVVALGTLCAIELQAAGCN--AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 771 l~~~p~V~~VrG~Glm~gIel~~~~~~--~~~~~~~~~~~~~l~~Gv~ 816 (817)
..+++.+.+|||.|+++++++...... ........+.+.++++|++
T Consensus 330 ~~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 377 (431)
T PRK06209 330 AAEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIRRGVL 377 (431)
T ss_pred HHhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHHCCcc
Confidence 778999999999999999999754211 1123445788999999985
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=484.02 Aligned_cols=353 Identities=21% Similarity=0.283 Sum_probs=281.7
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. ++||.||+ +|||+++|+|+.++||+ ||+|++|+.+|+++... ....++...+|+++|++
T Consensus 32 ~~~~~~~a~G~--~l~d~dG~----~~lD~~~g~~~~~lGh~-~p~i~~a~~~~~~~~~~---~~~~~~~~~~la~~L~~ 101 (426)
T PRK00062 32 TPRFIERAKGA--YLYDVDGN----EYIDYVGSWGPMILGHA-HPEVVEAVIEAAEKGLS---FGAPTELEVELAELVIE 101 (426)
T ss_pred CCeEEEeCcCC--EEEeCCCC----EEEEcccchhhhhcCCC-CHHHHHHHHHHHHhCCc---CCCCCHHHHHHHHHHHH
Confidence 46788888886 59999999 99999999999999999 99999999999998432 23568889999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
.++. .++|+|++||+||||+|+|+| |.+++ |.+||+|+++|||+|.++.++++......
T Consensus 102 ~~~~--~~~v~~~~sGseA~e~Aik~a-~~~~g------------------~~~ii~~~~~yHG~t~~~~~~~~~~~~~~ 160 (426)
T PRK00062 102 LVPS--IEMVRMVNSGTEATMSAIRLA-RGYTG------------------RDKIIKFEGCYHGHADSLLVKAGSGAATL 160 (426)
T ss_pred hCCC--CCEEEEecCHHHHHHHHHHHH-HHHhC------------------CCeEEEEcCccCCchhhhhhccCcccccc
Confidence 8763 579999999999999999999 67754 35899999999999988888765322110
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. .++... . +. .+ .+..++ ++|+|. +.+++.+++
T Consensus 161 ~--~~~~~~----~--~~--------~~-~~~~~~--------~~~~d~------------------~~l~~~i~~---- 193 (426)
T PRK00062 161 G--LPDSPG----V--PE--------DF-AKHTLT--------APYNDL------------------EAVEELFEE---- 193 (426)
T ss_pred C--CCCCCC----C--Cc--------cc-ccceEE--------cCCCCH------------------HHHHHHHHh----
Confidence 0 011000 0 00 00 010110 124443 456666653
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
.++++++||+||+ |+++|+++++++||++|+++|++||+++|+||||||| |+|.+|+++++++.||++++||++|+|
T Consensus 194 -~~~~~aaiivEpv-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g~~~~~~~~~~~pDi~~~gK~l~~G 270 (426)
T PRK00062 194 -YGDEIAAVIVEPV-AGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGAQGYYGVTPDLTTLGKIIGGG 270 (426)
T ss_pred -CCCcEEEEEEeCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccCCccHHHHhCCCcchHhhhhHhhCC
Confidence 3568999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+... ..+.|.+||++||++|++++++|+++++++ +.++.+.+++++++++.+..+++
T Consensus 271 -~p~ga~~~~~~i~~~~~~~---~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~ 342 (426)
T PRK00062 271 -LPVGAFGGRREIMEQLAPL---GPVYQAGTLSGNPLAMAAGLATLKLLKEPG----FYEELEALTKRLAEGLKEAAKKA 342 (426)
T ss_pred -CcceeeeEHHHHHHhhccC---CCceecccCcCCHHHHHHHHHHHHHHhcch----HHHHHHHHHHHHHHHHHHHHHHc
Confidence 7999999999999998532 134688999999999999999999998854 45555556666666777777888
Q ss_pred CCcceEEeeeeEEEEEEecCCCC-------CCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCN-------AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~-------~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+.+|||.|+|++++|.++... .+......+...++++||+
T Consensus 343 ~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~ 391 (426)
T PRK00062 343 GIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVY 391 (426)
T ss_pred CCceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeE
Confidence 99999999999999999864211 1224457899999999975
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-53 Score=479.58 Aligned_cols=353 Identities=19% Similarity=0.269 Sum_probs=280.6
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. ++||.||+ +|||+++|+|+.++||+ ||+|++|+++|+++..+. ...++...+|+++|++
T Consensus 30 ~p~~~~~~~G~--~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~---~~~~~~~~~lae~l~~ 99 (423)
T TIGR00713 30 TPFFVARGKGA--YLYDVDGN----EYIDYVLSWGPLILGHA-HPRVVEAVKEALERGTSY---GAPTEAEILLAKEIIS 99 (423)
T ss_pred CCeeEEeccCC--EEEeCCCC----EEEEccccccccccCCC-CHHHHHHHHHHHHhCCcC---CCCCHHHHHHHHHHHH
Confidence 47889998886 59999999 99999999999999999 999999999999986542 3467889999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
..+. .++|+|++||+||||+|+|+| |.|+++ .+||+++++|||.+.+++++++......
T Consensus 100 ~~~~--~~~v~~~~sGseA~e~Alk~a-r~~~gr------------------~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 158 (423)
T TIGR00713 100 RVPS--VEMVRFVNSGTEATMSAVRLA-RGYTGR------------------DKIIKFEGCYHGHHDALLVKAGSGAATL 158 (423)
T ss_pred hCCc--ccEEEEeCCHHHHHHHHHHHH-HHhhCC------------------CEEEEEcCCCCCChhhhhccccCccccc
Confidence 8874 379999999999999999999 778653 5899999999999888777665321110
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
..++..+ + + ....|..++ ++|+|. +.+++.+++
T Consensus 159 --~~~~~~~----~--~---------~~~~~~~~~--------~~~~d~------------------~~l~~~i~~---- 191 (423)
T TIGR00713 159 --GLPTSPG----V--P---------EDFAKLTLV--------LPYNDL------------------EALEEVFEE---- 191 (423)
T ss_pred --CCCCCCC----C--C---------cccccceEE--------eCCCCH------------------HHHHHHHHH----
Confidence 0011100 0 0 000011110 124443 456667763
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
.+++++|||+||+ ++++|+++++++|+++|+++|++||++||+|||+||| |+|.+|+++++++.||++||||++|+|
T Consensus 192 -~~~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~-r~g~~~~~~~~~~~pDi~t~sK~l~~G 268 (423)
T TIGR00713 192 -YGEEIAGVIVEPV-AGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVALGGAQEYFGVEPDLTTLGKIIGGG 268 (423)
T ss_pred -cCCcEEEEEEeCC-CCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccc-ccCcchhHHHhCCCcchhhhhhhhcCC
Confidence 3468999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+... ..+.|++||++||++|++|+++|++++++++ .++.+.+++++++.+.+.++++
T Consensus 269 -~pig~v~~~~~i~~~~~~~---~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~ 340 (423)
T TIGR00713 269 -LPVGAFGGRREIMERLAPE---GPVYQAGTLSGNPLAMAAGLATLKLLDEEGV----YTELDELAKRLAEGLSEVLEDT 340 (423)
T ss_pred -CceeeeeEHHHHHHhhCcC---CCeeeccCCCCCHHHHHHHHHHHHHHhcccH----HHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999988532 2346889999999999999999999988544 4445555666666777778888
Q ss_pred CCcceEEeeeeEEEEEEecCCCC-------CCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCN-------AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~-------~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+.+|||.|+|+++++..+... .+......+...++++||+
T Consensus 341 ~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 389 (423)
T TIGR00713 341 GIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVF 389 (423)
T ss_pred CCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeE
Confidence 99999999999999999754211 0112345788899999974
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=472.95 Aligned_cols=340 Identities=19% Similarity=0.306 Sum_probs=276.9
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+.+. ...+++..+|+++|++
T Consensus 22 ~p~~~~~~~G~--~l~d~~G~----~~lD~~~g~~~~~lGh~-~p~v~~ai~~~~~~~~~~~~-~~~~~~~~~l~~~l~~ 93 (396)
T PRK04073 22 LPIVISEAEGV--WVKDPEGN----RYMDMLSAYSAVNQGHR-HPKIIQALKDQADKVTLTSR-AFHSDQLGPWYEKVAK 93 (396)
T ss_pred CCceEEeeeec--EEEECCCC----EEEEcCCCHHhccCCCC-CHHHHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHh
Confidence 46788888886 59999999 99999999999999999 99999999999999887643 3568899999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhcc-ccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD-HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~-~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~ 533 (817)
+.+ .++++|++||+||||+|||+| |.|+.. .|. .++|.+||+++++|||+|.+++++++.+.++
T Consensus 94 ~~~---~~~~~~~~SGseA~e~Alk~a-~~~~~~~~g~-----------~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~ 158 (396)
T PRK04073 94 LTG---KDMVLPMNTGAEAVETAIKAA-RRWAYDVKGV-----------EPNKAEIIACEGNFHGRTMAAVSLSSEEEYK 158 (396)
T ss_pred cCC---CCeEEEcCChHHHHHHHHHHH-HHHhhhccCC-----------CCCCCEEEEECCCcCCCCHHHHhhcCCcccc
Confidence 876 479999999999999999999 666421 121 1357799999999999999999999765443
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
.. +++.+ +++.++ +|+|. +.+++.+.
T Consensus 159 ~~--------~~~~~--------~~~~~~----------------~~~d~------------------~~l~~~i~---- 184 (396)
T PRK04073 159 RG--------FGPML--------PGIKKI----------------PYGDL------------------EALKAAIT---- 184 (396)
T ss_pred cC--------CCCCC--------CCceEe----------------CCCCH------------------HHHHHhcc----
Confidence 31 11110 111222 24442 34555553
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
+++++||+||+ ++.+|.++++++|+++|+++|++||++||+|||||||||+|++|+++++++.||++|+||++|+
T Consensus 185 ----~~~~~viiep~-~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~~sK~lg~ 259 (396)
T PRK04073 185 ----PNTAAFLVEPI-QGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYILGKALGG 259 (396)
T ss_pred ----cCeEEEEEcCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCCEEEecccccC
Confidence 35899999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
|++|+|++++++++++.+... .+++||++||++|++|+++|++++++++. ++.+.++++|.+.+.++ .
T Consensus 260 gg~~ig~~~~~~~i~~~~~~~------~~~~t~~~~~~~~aaa~aaL~~~~~~~l~----~~~~~~~~~l~~~L~~l--~ 327 (396)
T PRK04073 260 GVFPISCVAANRDILGVFTPG------SHGSTFGGNPLACAVSIAALEVLEEEKLP----ERSLELGEYFKEQLKEI--D 327 (396)
T ss_pred CCCcceEEEEcHHHHhhhcCC------CCCCCCCCCHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHhh--c
Confidence 889999999999999988532 47899999999999999999999874444 44555566666555543 4
Q ss_pred CCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++.+.++||.|+|+++++... ...+...++++||+
T Consensus 328 ~~~i~~~~~~g~~~~~~~~~~--------~~~~~~~l~~~Gv~ 362 (396)
T PRK04073 328 NPMIKEVRGRGLFIGVELNEP--------ARPYCEALKEEGLL 362 (396)
T ss_pred CCcccceecceEEEEEEecch--------HHHHHHHHHHCCeE
Confidence 567889999999999998632 35678888999985
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=468.75 Aligned_cols=361 Identities=25% Similarity=0.351 Sum_probs=291.5
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. ++||+||+ +||||++|+|+.++||+ ||+|.+|+++|++++.+..+....++...+|+++|++
T Consensus 23 ~p~~~~~~~G~--~l~d~dG~----~~lD~~~g~~~~~lGh~-~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~la~~l~~ 95 (425)
T PRK08088 23 HPIFADRAENC--RVWDVEGR----EYLDFAGGIAVLNTGHL-HPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMNQ 95 (425)
T ss_pred CCceEEeeeeC--EEEeCCCC----EEEEcCCchhhcCCCCC-CHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHH
Confidence 36788888886 59999999 99999999999999999 9999999999999987655444558889999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCC-CCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~-~~~ 533 (817)
..|.++.++++|++||+||||+|||+| |.++++ .+||+|+++|||+|.+++++++.. .++
T Consensus 96 ~~~~~~~~~~~f~~sGsea~e~Alkla-r~~~~r------------------~~iv~~~~~yHG~~~~~~~~~~~~~~~~ 156 (425)
T PRK08088 96 KVPGDFAKKTLLVTTGSEAVENAVKIA-RAATKR------------------SGVIAFTGAYHGRTHYTLALTGKVNPYS 156 (425)
T ss_pred hCCCCCCCEEEEeCCcHHHHHHHHHHH-HHHhCC------------------CeEEEECCccCCccHHHHHhhCCCCccc
Confidence 877553469999999999999999999 777653 489999999999999999998642 122
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
. +++++ ..++.++++|..+ ++. + .+.+.+.+++.++..
T Consensus 157 ~--------~~~~~--------~~~~~~~~~p~~~------------~~~-----------~-~~~~~~~l~~~l~~~-- 194 (425)
T PRK08088 157 A--------GMGLM--------PGHVYRALYPCPL------------HGV-----------S-EDDAIASIERIFKND-- 194 (425)
T ss_pred c--------CCCCC--------CCCcEEcCCCccc------------cCc-----------c-HHHHHHHHHHHHHhc--
Confidence 2 11111 1223344444322 111 0 112346677777531
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
..++++||||+||+ |+++|+++++++|+++|+++|++||+++|+|||+||+||+|++++++++++.|||.+|||++++
T Consensus 195 -~~~~~~aavi~Epi-~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~ 272 (425)
T PRK08088 195 -AAPEDIAAIIIEPV-QGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIAG 272 (425)
T ss_pred -cCCCceEEEEECcc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCCEEEEeccccC
Confidence 23578999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +|+|++++++++++.+... .+++||++||++|+++.++|+.++.++ +.++.+..++++++.+.++.++
T Consensus 273 G-~rig~v~~~~~~~~~~~~~------~~~~t~~~~~~~~~a~~~~l~~~~~~~----~~~~~~~~~~~~~~~l~~l~~~ 341 (425)
T PRK08088 273 G-FPLAGVTGRAEVMDAIAPG------GLGGTYAGNPIACAAALAVLKVFEQEN----LLQKANALGEKLKDGLLAIAEK 341 (425)
T ss_pred C-CcceeeEecHHHHhhcCCC------CCCCCCCcCHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHh
Confidence 9 7999999999999988542 478999999999999999999998744 4455555566666677777778
Q ss_pred CCCcceEEeeeeEEEEEEecCCCC--CCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCN--AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~--~~~~~~~~~~~~~l~~Gv~ 816 (817)
+|.+.+|||.|+|++++|.++... ........+...|+++||+
T Consensus 342 ~~~~~~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~ 386 (425)
T PRK08088 342 HPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLI 386 (425)
T ss_pred CCCeEEEeccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCE
Confidence 899999999999999999754311 1224578899999999974
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-52 Score=465.73 Aligned_cols=340 Identities=21% Similarity=0.291 Sum_probs=280.0
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|.+ +||.||+ +||||+||+|++++||+ ||+|++|+++|++++.+... .+.++...+|+++|++
T Consensus 13 ~~~~~~~~~G~~--~~d~dG~----~~lD~~~g~~~~~lGh~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~ 84 (389)
T PRK01278 13 ADLAFERGEGVW--LIDEDGE----RYLDFASGIAVNSLGHA-HPHLVEALKEQAEKLWHVSN-LYRIPEQERLAERLVE 84 (389)
T ss_pred CCceEEeeecCE--EEECCCC----EEEECCccHhhccCCCC-CHHHHHHHHHHHHhcCcccc-ccCChHHHHHHHHHHh
Confidence 467889988864 8999999 99999999999999999 99999999999998765442 3568999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
..+ .++++|++||+|||++|+|+| |.|+..+|. ++|.+||+++++|||++.+++++++.+.++.
T Consensus 85 ~~~---~~~v~~~~sGseA~~~al~~a-r~~~~~~G~------------~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 148 (389)
T PRK01278 85 NSF---ADKVFFTNSGAEAVECAIKTA-RRYHYGKGH------------PERYRIITFEGAFHGRTLATIAAGGQEKYLE 148 (389)
T ss_pred hCC---CCEEEEcCCcHHHHHHHHHHH-HHHHHhcCC------------CCCCEEEEECCCcCCCcHHHHhccCChhhcc
Confidence 875 479999999999999999999 777654443 4678999999999999999999987654433
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. ..+. .+++..+ +|+|. +.+++.+.
T Consensus 149 ~--------~~~~--------~~~~~~~----------------~~~d~------------------~~l~~~l~----- 173 (389)
T PRK01278 149 G--------FGPL--------VPGFDQV----------------PFGDI------------------EALKAAIT----- 173 (389)
T ss_pred c--------CCCC--------CCCceEe----------------CCCCH------------------HHHHHhhC-----
Confidence 2 0000 0111111 24443 45665553
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
++++|||+||+ ++.+|+.++|++|+++|+++|++||++||+|||+|||||+|++|+++++++.||++|+||++++|
T Consensus 174 ---~~~~avivep~-~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G 249 (389)
T PRK01278 174 ---PNTAAILIEPI-QGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMAVAKGIGGG 249 (389)
T ss_pred ---CCeEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCEEEEehhccCC
Confidence 27999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+.. ..|++||++||++|++++++|++++++++.++ .+.+++++++++.++.+++
T Consensus 250 -~~ig~~~~~~~~~~~~~~------~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~----~~~~~~~l~~~l~~l~~~~ 318 (389)
T PRK01278 250 -FPLGACLATEEAAKGMTP------GTHGSTYGGNPLAMAVGNAVLDVILAPGFLDN----VQRMGLYLKQKLEGLVDRF 318 (389)
T ss_pred -cceEEEEEcHHHHhccCC------CCCCCCCCccHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHhhC
Confidence 799999999999988843 25889999999999999999999987444444 4455555555666666678
Q ss_pred C-CcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 R-TVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p-~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
| ++.+|||.|+|+++++..+ ...|...++++||+
T Consensus 319 ~~~~~~v~g~G~~~~i~~~~~--------~~~~~~~l~~~GV~ 353 (389)
T PRK01278 319 PDVIEEVRGKGLLLGLKCVVP--------NRDLVQALRDEGLL 353 (389)
T ss_pred CCceeeEecccEEEEEEEecC--------HHHHHHHHHHCCeE
Confidence 7 7889999999999999542 35788899999984
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=458.52 Aligned_cols=348 Identities=21% Similarity=0.316 Sum_probs=281.8
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|.++++++|.+ +||.||+ +||||+|++++.++||+ ||+|++|+++|++++.+.+. ...++...+|+++|++
T Consensus 19 ~~~~~~~~~g~~--~~~~~g~----~~lD~~s~~~~~~~Gh~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~ 90 (401)
T TIGR01885 19 LPVVFSKAEGVH--VWDVEGK----RYLDFLSAYSAVNQGHC-HPKIVKALTEQAQKLTLSSR-AFYNDVFGEFAEYVTK 90 (401)
T ss_pred CCceEEeeecCE--EEeCCCC----EEEEcccCHhhccCCCC-CHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHh
Confidence 356788888875 8999999 99999999999999999 99999999999999876543 2468899999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccc-cccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH-EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~-G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~ 533 (817)
+++ .++++|++||+||||+|||+| |.++.++ |. ..+|.+|++++++|||+|.+++++++.+.++
T Consensus 91 ~~~---~~~~~~~~SGs~A~e~ai~~a-~~~~~~~~~~-----------~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~ 155 (401)
T TIGR01885 91 LFG---YDKVLPMNTGAEAVETAIKLA-RKWGYKVKGI-----------PENQAIIVSAKGNFHGRTLGAISMSTDPDSR 155 (401)
T ss_pred hcC---CCEEEEeCccHHHHHHHHHHH-HHHhhhhcCC-----------CCCCCEEEEECCCcCcccHHHHhCcCCcccc
Confidence 987 479999999999999999999 6775432 21 1357899999999999999999998754332
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
.. +++.. | ++.. ++|||. +.+++.|++
T Consensus 156 ~~--------~~~~~--~------~~~~----------------~~~~d~------------------~~le~~l~~--- 182 (401)
T TIGR01885 156 TN--------FGPYV--P------GFKK----------------IPYNNL------------------EALEEALED--- 182 (401)
T ss_pred cc--------cCCCC--C------CceE----------------eCCCCH------------------HHHHHHHHh---
Confidence 21 11110 0 1111 124543 556777763
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
.++++++||+||+ ++++|.+.|+++|+++|+++|++||+++|+|||||||||+|++++++++++.||++|+||+++|
T Consensus 183 --~~~~~~avi~E~v-~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~~~gK~l~~ 259 (401)
T TIGR01885 183 --HGPNVCAFIVEPI-QGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVLLGKALSG 259 (401)
T ss_pred --cCCCEEEEEEeCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCCCEEEeeccccC
Confidence 2468999999998 9999999999999999999999999999999999999999999998889999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
|++|+|++++++++++.+... .+++||++||++|++++++|+++++++ +.++.+.+++++++.+.++ .
T Consensus 260 g~~~ig~v~~~~~i~~~~~~~------~~~~t~~~~p~~~~aa~a~L~~i~~~~----l~~~~~~~~~~~~~~L~~l--~ 327 (401)
T TIGR01885 260 GVYPVSAVLADDDVMLTIKPG------EHGSTYGGNPLACAVAVAALEVLEEEK----LAENAEKLGEIFRDQLKKL--P 327 (401)
T ss_pred CCCCcEEEEEcHHHHhhccCC------CCCCCCCCCHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHhc--c
Confidence 988999999999999887532 367899999999999999999998744 4455555666666655543 3
Q ss_pred CCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++.+.++||.|+|++|++..+. . ......+...++++||+
T Consensus 328 ~~~~~~~~g~g~~~~i~~~~~~-~--~~~~~~l~~~l~~~Gv~ 367 (401)
T TIGR01885 328 KPIITEVRGRGLLNAIVIDESK-T--GRTAWDLCLKLKEKGLL 367 (401)
T ss_pred CCceeEEeecCeeEEEEeccCc-c--hhHHHHHHHHHHhCCEE
Confidence 5778899999999999996542 1 12457788889999985
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=457.35 Aligned_cols=344 Identities=24% Similarity=0.326 Sum_probs=279.3
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++.+++|. ++||.||+ +||||+||+|+.+|||+ ||+|.+|+.+|++++.+... ...+++..+|+++|++
T Consensus 22 ~~~~~~~~~G~--~~~d~dG~----~~iD~~~~~~~~~lGh~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~ 93 (403)
T PRK05093 22 AEFIPVRGEGS--RVWDQQGK----EYIDFAGGIAVTALGHC-HPALVKALKEQGEKLWHISN-VFTNEPALRLAKKLID 93 (403)
T ss_pred CCeeEEEeecC--EEEeCCCC----EEEEcCcCHHhccCCCC-CHHHHHHHHHHHHhcCcccC-ccCCHHHHHHHHHHHh
Confidence 36788888886 59999999 99999999999999999 99999999999998665432 2467889999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
..+ .++++|++||+||||+|+|+| |.++.+++. .+|.+||+++++|||+|.+++++++.+.++.
T Consensus 94 ~~~---~~~~~~~~sGseA~e~a~kla-r~~~~~~~~------------~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~ 157 (403)
T PRK05093 94 ATF---AERVFFANSGAEANEAAFKLA-RRYACDRHG------------PEKTEIIAFHNSFHGRTLFTVSVGGQPKYSD 157 (403)
T ss_pred hCC---CCEEEEeCchHHHHHHHHHHH-HHHHhhcCC------------CCCCeEEEEcCCcCCchhhhHhhcCChhhhh
Confidence 875 479999999999999999999 777754321 4578999999999999999999987643332
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. .++. + .++.+ ++|||. +.+++.+.
T Consensus 158 ~--------~~~~---~-----~~~~~----------------~~~~d~------------------~~l~~~l~----- 182 (403)
T PRK05093 158 G--------FGPK---P-----ADITH----------------VPFNDL------------------AAVKAVID----- 182 (403)
T ss_pred c--------CCCC---C-----CCcEE----------------eCCCCH------------------HHHHHHhc-----
Confidence 1 0100 0 11112 225553 44565553
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
+++++||+||+ +++||+.+++++|+++|+++|++||+++|+|||++||||+|++++++++++.||+++|||++++|
T Consensus 183 ---~~~aaiiiep~-~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G 258 (403)
T PRK05093 183 ---DHTCAVVVEPI-QGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILTSAKALGGG 258 (403)
T ss_pred ---CCeEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCEEEecccccCC
Confidence 36899999998 99999999999999999999999999999999999999999988888999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+... .+++||+++|++|++++++|++++++++.+++.++. +++.+.|.++..++
T Consensus 259 -~rig~vv~~~~i~~~l~~~------~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~----~~l~~~L~~~~~~~ 327 (403)
T PRK05093 259 -FPIGAMLTTAEIASHFKVG------THGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARR----QRFVDGLQKINQKY 327 (403)
T ss_pred -cceEEEEEcHHHHhhcCCC------CCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHH----HHHHHHHHHHHhhC
Confidence 8999999999999988532 477899999999999999999997755555555444 44455555554567
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+.++||.|+++++++..+. ......|...++++||+
T Consensus 328 ~~~~~~~~~G~~~~~~l~~~~----~~~~~~~~~~l~~~Gv~ 365 (403)
T PRK05093 328 GVFSEIRGMGLLIGAELKPQY----KGRARDFLNAAAEEGVM 365 (403)
T ss_pred CCeEeEeeCceEEEEEecCcc----hhHHHHHHHHHHHCCeE
Confidence 778899999999999997531 12456788999999975
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-49 Score=439.50 Aligned_cols=334 Identities=22% Similarity=0.287 Sum_probs=273.2
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|.+ +||.||+ +||||+|++|+.+|||+ ||+|++|+++|++++.+.. ....++...+|+++|.+
T Consensus 11 ~~~~~~~~~G~~--~~d~~G~----~~lD~~s~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~ 82 (377)
T PRK02936 11 FPIDIVKGKGTK--VTDNNGK----TYLDFTSGIAVCNLGHC-HPTVTKAVQEQLDDIWHVS-NLFTNSLQEEVASLLAE 82 (377)
T ss_pred CCceEEEeecCE--EEeCCCC----EEEECCcchhhccCCCC-CHHHHHHHHHHHHhccccc-cccCCHHHHHHHHHHHh
Confidence 467888988875 8999999 99999999999999999 9999999999999875543 23457889999999998
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
..+ .++++|++||+|||++|+|+| |.+++ +.+||+++++|||++.+++++++...++.
T Consensus 83 ~~~---~~~~~~~~sG~~a~~~A~~~a-~~~~g------------------~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~ 140 (377)
T PRK02936 83 NSA---GDLVFFCNSGAEANEAALKLA-RKHTG------------------KSKIVTFEQSFHGRTFGTMSATGQEKIKE 140 (377)
T ss_pred cCC---CCEEEEeCCcHHHHHHHHHHH-HHhcC------------------CCeEEEECCCcCCCcHHhhhccCCccccc
Confidence 766 368999999999999999999 66654 35899999999999999999987544332
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
+ +++.. +++..+ +|||. +.+++.+.
T Consensus 141 ~--------~~~~~--------~~~~~~----------------~~~d~------------------~~l~~~~~----- 165 (377)
T PRK02936 141 G--------FGPLL--------PGFTHV----------------PFNDI------------------KALKEVMN----- 165 (377)
T ss_pred c--------CCCCC--------CCceEe----------------CCCCH------------------HHHHHhcc-----
Confidence 2 11100 111111 24443 44555553
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
+++++||+||+ |+++|+++++++|+++|+++|++||+++|+|||+|||||+|++++++++++.||++|+||++++|
T Consensus 166 ---~~~~~ii~e~i-~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G 241 (377)
T PRK02936 166 ---EEVAAVMLEVV-QGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIVTVAKGLGNG 241 (377)
T ss_pred ---CCeEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEEEEcccccCC
Confidence 35899999998 99999999999999999999999999999999999999999988888999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+... .+.+||++||++|++++++|+.++++++.+++.++ ++++.+.+.+.+.++
T Consensus 242 -~~ig~v~~~~~~~~~~~~~------~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~----~~~l~~~L~~~~~~~ 310 (377)
T PRK02936 242 -IPVGAMIGKKELGTAFGPG------SHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEK----GEYFLQKLQEELEHL 310 (377)
T ss_pred -CccEEEEEcHHHHhhccCC------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHH----HHHHHHHHHHHHhhC
Confidence 7999999999999988532 47789999999999999999999765555555544 444555666666678
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+.+|||.|+|+.+++.++ ...+...+.++||+
T Consensus 311 ~~~~~v~~~g~~~~i~~~~~--------~~~~~~~l~~~gv~ 344 (377)
T PRK02936 311 ECVKNIRGKGLMIGIECTEE--------VAPVIEQLREEGLL 344 (377)
T ss_pred CcEEeEeecceEEEEEecch--------HHHHHHHHHHCCeE
Confidence 88999999999999999643 46688888899974
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-49 Score=441.81 Aligned_cols=335 Identities=21% Similarity=0.279 Sum_probs=272.3
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. ++||.||+ +||||.+|+++++|||+ ||+|.+|+++|++++++.. ..+.++...+|+++|++
T Consensus 25 ~~~~~~~~~G~--~~~d~dg~----~~lD~~s~~~~~~lG~~-~p~v~~ai~~~~~~~~~~~-~~~~~~~~~~la~~l~~ 96 (398)
T PRK03244 25 PPLALVRGEGA--VVWDVDGK----EYLDLLGGIAVNALGHA-HPAVVEAVTRQLATLGHVS-NLFATEPQIALAERLVE 96 (398)
T ss_pred CCceEEEeeec--EEEECCCC----EEEECCcCHhhccCCCC-CHHHHHHHHHHHHhccCcc-CccCCHHHHHHHHHHHH
Confidence 46788898886 49999999 99999999999999999 9999999999999977643 23567888999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
..+....++++|++||+|||+.|+|++ +. ++ |.+||.++++|||++.+++++++...++.
T Consensus 97 ~~~~~~~~~v~~~~sgsea~~~al~~~-~~-~g------------------~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 156 (398)
T PRK03244 97 LLGAPEGGRVFFCNSGAEANEAAFKLA-RL-TG------------------RTKIVAAEGGFHGRTMGALALTGQPAKRA 156 (398)
T ss_pred hCCCCCCCEEEEeCchHHHHHHHHHHH-HH-HC------------------CCeEEEECCCcCCccHHHHhccCCccccc
Confidence 877432469999999999999999999 44 22 45899999999999999999987543332
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. +.+ + ..++..+ +|+|. +.+++.+.
T Consensus 157 ~-----~~~----~-------~~~~~~~----------------~~~d~------------------~~l~~~~~----- 181 (398)
T PRK03244 157 P-----FEP----L-------PGGVEHV----------------PYGDV------------------DALAAAVD----- 181 (398)
T ss_pred C-----CCC----C-------CCCceEe----------------CCCCH------------------HHHHHhhc-----
Confidence 1 000 0 0011111 13332 34555542
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
+++++||+||+ |+.+|+++|+++|+++|+++|++||++||+|||+|||||+|++|+++++++.||++||||+||+|
T Consensus 182 ---~~~~aviiep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi~t~sK~l~~G 257 (398)
T PRK03244 182 ---DDTAAVFLEPI-QGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVVTLAKGLGGG 257 (398)
T ss_pred ---CCeEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCCEEEEchhhhCC
Confidence 37899999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+.. ..|++||++||++|++++++|+++++++ +.++.+.++++|++.+.++ .+
T Consensus 258 -~~ig~~~~~~~~~~~~~~------~~~~~t~~~~~~~~aaa~a~l~~~~~~~----~~~~~~~~~~~l~~~L~~~--~~ 324 (398)
T PRK03244 258 -LPIGACLAFGPAADLLTP------GLHGSTFGGNPVACAAALAVLDTIASEG----LLENAERLGEQLRAGIEAL--GH 324 (398)
T ss_pred -cccEEEEEcHHHHhhccC------CCCcCCCCCCHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHhc--CC
Confidence 799999999999998843 2588999999999999999999998744 4445555566555555433 47
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
|.+.+|||.|+|++|++..+ ....+..+++++||+
T Consensus 325 ~~~~~v~g~g~~~~i~~~~~-------~~~~~~~~l~~~Gv~ 359 (398)
T PRK03244 325 PLVDHVRGRGLLLGIVLTAP-------VAKAVEAAAREAGFL 359 (398)
T ss_pred CceeeEeeccEEEEEEEecc-------HHHHHHHHHHHCCeE
Confidence 88889999999999999532 456788899999974
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-48 Score=436.35 Aligned_cols=342 Identities=19% Similarity=0.287 Sum_probs=274.7
Q ss_pred eEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhh
Q 003472 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (817)
Q Consensus 376 p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (817)
|+++++++|. |+||.||+ +||||++|+++.++||+ ||+|.+|+++|++++.+.+. ...++...+|+++|+++
T Consensus 24 ~~~~~~~~G~--~~~d~~g~----~~lD~~~~~~~~~~Gh~-~~~i~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~ 95 (401)
T PRK00854 24 DVVLTRGEGV--WVWDTDGN----RYLDCLSAYSAVNQGHC-HPKILAAMVEQAGRLTLTSR-AFRNDQLAPLYEELAAL 95 (401)
T ss_pred CceEEeeeeC--EEEECCCC----EEEEcCcchhhccCCCC-CHHHHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHhh
Confidence 5678888886 59999999 99999999999999999 99999999999999877543 34578999999999999
Q ss_pred cCCCCcceEEEeCChHHHHHHHHHHHHHHhhcc-ccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD-HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 456 ~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~-~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
.+ .++++|++||+||||+|||+| |.++.+ .|. ..+|.+||+++++|||+|.+++++++.+.++.
T Consensus 96 ~~---~~~~~~~~SGs~A~e~al~~a-~~~~~~~~g~-----------~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~ 160 (401)
T PRK00854 96 TG---SHKVLPMNSGAEAVETAIKAV-RKWGYEVKGV-----------PEGQAEIIVCADNFHGRTLSIVGFSTDPDARG 160 (401)
T ss_pred CC---CCEEEEeCCcHHHHHHHHHHH-HHHHHhccCC-----------CCCCceEEEECCCcCCccHHHHhccCCccccc
Confidence 87 369999999999999999999 666421 121 13567999999999999999888886543332
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. + .+. . .++.++ +|+|. +.+++.+.
T Consensus 161 ~-----~---~~~--~------~~~~~~----------------~~~d~------------------~~le~~i~----- 185 (401)
T PRK00854 161 G-----F---GPF--T------PGFRVV----------------PFGDA------------------EALEAAIT----- 185 (401)
T ss_pred c-----C---CCC--C------CCeEEe----------------CCCCH------------------HHHHHHhC-----
Confidence 1 1 110 0 111122 24543 45666553
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
++++|||+||+ ++.+|.++++++||++|+++|++||++||+|||||||||+|++|+.+++|+.||++++||+|+||
T Consensus 186 ---~~~~aii~e~~-~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~~K~l~gg 261 (401)
T PRK00854 186 ---PNTVAFLVEPI-QGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLIGKALSGG 261 (401)
T ss_pred ---CCeEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEEecccccCC
Confidence 36899999998 99999999999999999999999999999999999999999998888999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
++|+|++++++++++.+.. ..+++||++||++|++++++|+.++++++ .++.+.+++++.+.|.+. ..
T Consensus 262 ~~~ig~v~~~~~~~~~l~~------~~~~~t~~~~~~~~aa~~a~L~~l~~~~~----~~~~~~~~~~l~~~L~~~--~~ 329 (401)
T PRK00854 262 FYPVSAVLSNSEVLGVLKP------GQHGSTFGGNPLACAVARAALKVLTEEGM----IENAAEMGAYFLEGLRSI--RS 329 (401)
T ss_pred ccCeEEEEEcHHHHhcccC------CCCCCCCCcCHHHHHHHHHHHHHHHHcCH----HHHHHHHHHHHHHHHHhh--cc
Confidence 8899999999999998743 24788999999999999999999977444 444455555555555443 23
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+.+++|.|+|+.+++..+. .....+...++++||+
T Consensus 330 ~~~~~~~g~g~~~~i~~~~~~-----~~~~~~~~~L~~~GV~ 366 (401)
T PRK00854 330 NIVREVRGRGLMLAVELEPEA-----GGARQYCEALKERGLL 366 (401)
T ss_pred CceEEEeccceEEEEEEecCc-----hhHHHHHHHHHHCCeE
Confidence 456789999999999997642 2456788999999985
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=432.12 Aligned_cols=347 Identities=20% Similarity=0.283 Sum_probs=277.5
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|.++.+++|. |+||.||+ +||||++|+++.++||+ ||+|.+|+++|++++.+.+. .+.++...+++++|++
T Consensus 13 ~~~~~~~~~G~--~~~d~dg~----~~lD~~~~~~~~~~Gh~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~ 84 (400)
T PTZ00125 13 LPVVLKRGKGV--FVWDVEGK----KYYDFLSAYSAVNQGHC-HPKILAALINQAQKLTLTSR-AFYNDVLGLAEKYITD 84 (400)
T ss_pred CCccEEeeecC--EEEeCCCC----EEEEcccCHhhccCCcC-CHHHHHHHHHHHHhcccccc-cccCHHHHHHHHHHHh
Confidence 36688888886 49999999 99999999999999999 99999999999998887653 2357788888888888
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhh-ccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFS-FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t-~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~ 533 (817)
+++ .++++|++||+||||+|||++ |.++ .++|. ..++.+||+++++|||++.+++++++...+.
T Consensus 85 ~~~---~~~~~~~~SGs~A~e~al~~~-~~~~~~~~~~-----------~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~ 149 (400)
T PTZ00125 85 LFG---YDKVLPMNSGAEAGETALKFA-RKWGYEVKGI-----------PENQAKIIFCNGNFSGRTIGACSASTDPKCY 149 (400)
T ss_pred CCC---CCEEEEeCCcHHHHHHHHHHH-HHHHHhccCC-----------CCCCCeEEEECCCcCCccHHHHhhcCCcchh
Confidence 765 579999999999999999999 5442 22221 0246799999999999999999998643221
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
.. +.+.. +++.. ++|+|. +.+++.++
T Consensus 150 ~~--------~~~~~--------~~~~~----------------~~~~d~------------------~~le~~l~---- 175 (400)
T PTZ00125 150 NN--------FGPFV--------PGFEL----------------VDYNDV------------------EALEKLLQ---- 175 (400)
T ss_pred cc--------CCCCC--------CCceE----------------eCCCCH------------------HHHHHHhC----
Confidence 11 00000 01111 124443 55666664
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
.+++++|++||+ ++.+|+++++++|+++|+++|++||++||+|||+|||||+|++++.+++++.||++|+||++++
T Consensus 176 ---~~~~~~v~~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~~~sK~l~~ 251 (400)
T PTZ00125 176 ---DPNVAAFIVEPI-QGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVLLGKALSG 251 (400)
T ss_pred ---CCCeEEEEEcCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCEEEEcccccC
Confidence 246999999998 9999999999999999999999999999999999999999999999899999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
|+.|+|++++++++++.+... .+++||+++|++|+++.++|++++++++ .++.+++++++++++.+++..
T Consensus 252 g~~~ig~v~~~~~~~~~~~~~------~~~~t~~~~~~~~~aa~~~l~~i~~~~~----~~~~~~~~~~l~~~l~~l~~~ 321 (400)
T PTZ00125 252 GLYPISAVLANDDVMLVIKPG------EHGSTYGGNPLACAVAVEALEVLKEEKL----AENAQRLGEVFRDGLKELLKK 321 (400)
T ss_pred CCcCcEEEEEcHHHHhhccCC------CCCCCCCcCHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHhc
Confidence 977999999999999987432 3678999999999999999999987544 444555666666677666677
Q ss_pred CCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++.+.++||.|+|.++++..+. ......+...++++||+
T Consensus 322 ~~~~~~~~~~g~~~~v~~~~~~----~~~~~~~~~~l~~~Gv~ 360 (400)
T PTZ00125 322 SPWVKEIRGKGLLNAIVFDHSD----GVNAWDLCLKLKENGLL 360 (400)
T ss_pred CCCeEEEecccEEEEEEEccCc----chHHHHHHHHHHHCCeE
Confidence 7888899999999999997531 13456678888899974
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-46 Score=418.15 Aligned_cols=332 Identities=22% Similarity=0.265 Sum_probs=267.3
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|.++++++|. |+||.||+ +|||+.||+++.++|| ||+|.+|+.+|++++.+.. ....++...+++++|..
T Consensus 11 ~~~~~~~~~G~--~l~d~dg~----~~lD~~s~~~~~~lG~--~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~ 81 (375)
T PRK04260 11 AAIEFVKAEGN--YLIDTDGK----KYLDFSSGIGVTNLGF--HPQVQQALQKQAGLIWHSP-NLYLNSLQEEVAQKLIG 81 (375)
T ss_pred CCceEEEeeeC--EEEeCCCC----EEEECCCCcccccCCC--CHHHHHHHHHHHHhcCccc-CccCCHHHHHHHHHHhc
Confidence 46788888886 59999999 9999999999999999 6899999999999865432 23457777888887765
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
.. ..+++|++||+|||+.|+|+| |.+++ |.+||+++++|||++.+++++++...++.
T Consensus 82 ~~----~~~~~~~~SGseA~~~Al~~a-r~~~~------------------~~~vv~~~~~yHg~~~~~~~~~~~~~~~~ 138 (375)
T PRK04260 82 DK----DYLAFFCNSGAEANEAAIKIA-RKATG------------------KQEIITFQNSFHGRTFGSMSATGQDKIKD 138 (375)
T ss_pred Cc----CCEEEEcCccHHHHHHHHHHH-HHhcC------------------CCeEEEECCCcCcccHHHHhccCCcccCC
Confidence 21 236899999999999999999 66654 35899999999999999999987654333
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
+ +++. ++. + + ...|||. +.+++.+.
T Consensus 139 ~--------~~~~--~~~---------~--~-----------~~~~~dl------------------~~l~~~l~----- 163 (375)
T PRK04260 139 G--------FGDG--VPH---------F--S-----------YAIFNDL------------------NSVKALVN----- 163 (375)
T ss_pred C--------CCCC--CCC---------e--E-----------EeCCCCH------------------HHHHHhcC-----
Confidence 2 1110 000 0 0 0113442 44555543
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
+++++|++||+ ++++|+++++++|+++++++|+++|+++|+|||+|||||+|.++.++++++.||++||||+||+|
T Consensus 164 ---~~~a~vi~e~v-~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G 239 (375)
T PRK04260 164 ---KNTAAVMLELV-QGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIFTLAKGLANG 239 (375)
T ss_pred ---CCeEEEEECCe-ECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEEEecccccCC
Confidence 36899999998 99999999999999999999999999999999999999999988988999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+... .+.+||++||++|+++.++|++++++++.+++. ..++++++.+.+.+.++
T Consensus 240 -~~ig~~~~~~~~~~~~~~~------~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~ 308 (375)
T PRK04260 240 -VPVGAMLAKSSLGGAFGYG------SHGSTFGGNKLSMAAASATLDIMLTAGFLEQAL----ENGNYLQEQLQKALQDK 308 (375)
T ss_pred -cceEEEEEcHHHHhhcCCC------CCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHhhC
Confidence 7999999999999888532 478899999999999999999998755555544 44555555666777788
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+..|+|.|++++++|... ...+.+.++++||+
T Consensus 309 ~~~~~~~~~g~~~~~~~~~~--------~~~~~~~l~~~Gi~ 342 (375)
T PRK04260 309 ETVTTVRGLGYMIGIETTAD--------LSQLVEAARDKGLI 342 (375)
T ss_pred CCeeEEeccceEEEEEecCc--------HHHHHHHHHhCCCE
Confidence 88889999999999999432 35788999999985
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-45 Score=414.15 Aligned_cols=376 Identities=27% Similarity=0.394 Sum_probs=292.2
Q ss_pred hhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccc
Q 003472 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (817)
Q Consensus 355 ~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~ 434 (817)
+++++.+|++++ . ...|+++++++|. ++||.||+ +||||++|+++.++||+ ||+|++|+++|+++..+
T Consensus 3 ~~~~~~~~~~~~--~---~~~~~~~~~~~g~--~~~d~dG~----~~id~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~ 70 (413)
T cd00610 3 ERDRKVLWHGYT--V---RPYPLVIVRAEGA--YLYDVDGN----RYLDFLSGIGVLNLGHN-HPEVVEALKEQLAKLTH 70 (413)
T ss_pred chhhhhcccccc--C---CCCCceEEeeecC--EEEeCCCC----EEEEcCccHHhhccCCC-CHHHHHHHHHHHHhCcC
Confidence 455677888876 1 2457899998886 49999999 99999999999999999 99999999999987665
Q ss_pred cCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcC
Q 003472 435 VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKG 514 (817)
Q Consensus 435 ~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~g 514 (817)
.....+.++...+|+++|+++.|.+ .++++|++||+|||+.|++++ |.+++ +.+||++++
T Consensus 71 ~~~~~~~~~~~~~l~~~l~~~~~~~-~~~v~~~~sgsea~~~al~~~-~~~~~------------------~~~ii~~~~ 130 (413)
T cd00610 71 FSLGFFYNEPAVELAELLLALTPEG-LDKVFFVNSGTEAVEAALKLA-RAYTG------------------RKKIISFEG 130 (413)
T ss_pred ccCcccCCHHHHHHHHHHHHhCCCC-CCEEEEcCcHHHHHHHHHHHH-HHHcC------------------CCeEEEECC
Confidence 4432236899999999999998742 689999999999999999999 66654 358999999
Q ss_pred CccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCch
Q 003472 515 SYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (817)
Q Consensus 515 syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~ 594 (817)
+|||++.+++++++...++.. +. +. ...+..++.+.... ..
T Consensus 131 ~yhg~~~~~~~~~~~~~~~~~-----~~-------~~----~~~~~~~~~~~~~~-----------------------~~ 171 (413)
T cd00610 131 AYHGRTLGALSLTGSKKYRGG-----FG-------PL----LPGVLHVPYPYRYR-----------------------PP 171 (413)
T ss_pred CcCCccHHHHHhcCCcccccc-----CC-------CC----CCCcEEeCCCcccc-----------------------ch
Confidence 999999999999875433321 00 00 01122222221100 00
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch
Q 003472 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (817)
Q Consensus 595 ~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a 674 (817)
.......+.+++.+++ +++++++||+||+ ++++|.++++++|+++|+++|++||+++|+|||++||||+|.+++
T Consensus 172 ~~~~~d~~~l~~~l~~-----~~~~~~~vi~~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~ 245 (413)
T cd00610 172 AELADDLEALEEALEE-----HPEEVAAVIVEPI-QGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFA 245 (413)
T ss_pred hhHHHHHHHHHHHHhc-----CCCCEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhh
Confidence 0011124667777763 3568999999997 999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHH
Q 003472 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (817)
Q Consensus 675 ~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~ 754 (817)
++++++.||++++||++++| +|+|++++++++++.+.. ..+.+++||++||++++++.++|++++++++.+++.
T Consensus 246 ~~~~~~~~d~~t~sK~l~~g-~~~g~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~- 319 (413)
T cd00610 246 FEHFGVEPDIVTLGKGLGGG-LPLGAVLGREEIMDAFPA----GPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAA- 319 (413)
T ss_pred HhhcCCCCCeEEEcccccCc-cccEEEEEcHHHHHhhcc----CCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHH-
Confidence 99999999999999999999 899999999999998711 234578999999999999999999998755545544
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCC--CcchHHHHHHHHHHcCCC
Q 003472 755 ERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA--GYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 755 ~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~--~~~~~~~~~~~~l~~Gv~ 816 (817)
.+++++.+.+.++...++.+.++++.|.++.+++.++.... +......+...++++||+
T Consensus 320 ---~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~ 380 (413)
T cd00610 320 ---ELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLL 380 (413)
T ss_pred ---HHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeE
Confidence 45555555555555556788889999999999997652111 113556788889999975
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=413.40 Aligned_cols=338 Identities=24% Similarity=0.356 Sum_probs=276.1
Q ss_pred eEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhh
Q 003472 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (817)
Q Consensus 376 p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (817)
|+++++++|. ++||.||+ +||||.+|++++++||+ ||+|.+|+.+|+++..+... .+.++...+|+++|++.
T Consensus 22 ~~~~~~~~G~--~~~d~dg~----~~iD~~~g~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~ 93 (396)
T PRK02627 22 PIAFVRGEGA--RLWDDDGK----EYLDFLAGIAVNNLGHC-HPKLVEAIQEQAAKLIHTSN-LYYIEPQEELAEKLVEL 93 (396)
T ss_pred CceEEeeeeC--EEEeCCCC----EEEECCccHHhccCCCC-CHHHHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHhh
Confidence 6788898886 49999999 99999999999999999 99999999999998765432 35688999999999998
Q ss_pred cCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCc
Q 003472 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (817)
Q Consensus 456 ~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~ 535 (817)
.+ .++++|++||+||++.|+|++ +.++++.+ .++.+|++++++|||.+..++++++...++.+
T Consensus 94 ~~---~~~v~~~~gg~eA~~~al~~a-~~~~~~~~-------------~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 156 (396)
T PRK02627 94 SG---MDKVFFCNSGAEANEAAIKLA-RKYGHKKG-------------IEKPEIITAENSFHGRTLATLSATGQPKYQEG 156 (396)
T ss_pred cC---CCEEEECCCcHHHHHHHHHHH-HHHhcccC-------------CCCCeEEEECCCcCcccHHHHHhcCCcccccc
Confidence 65 589999999999999999999 77776543 23468999999999999999999875543321
Q ss_pred CCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCC
Q 003472 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (817)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~ 615 (817)
+. +. .+++..+ +|+|. +.+++.+.
T Consensus 157 -----~~---~~--------~~~~~~~----------------~~~d~------------------~~l~~~i~------ 180 (396)
T PRK02627 157 -----FE---PL--------VEGFIYV----------------PFNDI------------------EALKAAIT------ 180 (396)
T ss_pred -----CC---CC--------CCCceEe----------------CCCCH------------------HHHHHhcC------
Confidence 00 00 0111111 23442 44555552
Q ss_pred CCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCCC
Q 003472 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (817)
Q Consensus 616 ~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggGy 695 (817)
+++++||+||+ ++.+|+.+++++|+++|+++|++||++||+|||++||||+|++++++++++.||++||||++++|
T Consensus 181 --~~~~~vii~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~t~sK~~~~G- 256 (396)
T PRK02627 181 --DKTAAVMLEPI-QGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPDIMTLAKGLGGG- 256 (396)
T ss_pred --CCeEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCCEEEEcchhhCC-
Confidence 46899999998 99999889999999999999999999999999999999999998888999999999999999999
Q ss_pred CcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 696 ~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
+|+|++++++++++.+.. ..+.+||++||++|+++.++|+.++++++ .++.+.+++++++.+.+++.++|
T Consensus 257 ~rig~~~~~~~~~~~~~~------~~~~~t~~~~~~~~~aa~~~l~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~ 326 (396)
T PRK02627 257 VPIGAVLAKEKVADVFTP------GDHGSTFGGNPLACAAALAVIEIIEEEGL----LENAAEVGEYLRAKLRELLEKYP 326 (396)
T ss_pred cccEEEEEcHHHHhccCC------CCCCCCCCCCHHHHHHHHHHHHHHhhccH----HHHHHHHHHHHHHHHHHHHHhCC
Confidence 799999999999988743 24788999999999999999999987444 44455555656666666667788
Q ss_pred CcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 776 TVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 776 ~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+.+++|.|+++++++.. ....+...++++||+
T Consensus 327 ~~~~~~~~g~~~~i~~~~--------~~~~~~~~l~~~Gv~ 359 (396)
T PRK02627 327 GIKEVRGLGLMIGIELDR--------PAAEIVKKALEKGLL 359 (396)
T ss_pred CeeeeccCcEEEEEEecC--------cHHHHHHHHHHCCeE
Confidence 888999999999999932 246788999999985
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=377.60 Aligned_cols=367 Identities=18% Similarity=0.209 Sum_probs=276.5
Q ss_pred eecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHH-HHHhc-----cccCCCCCCChHHHHHHHHHHh
Q 003472 381 SRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGY-TAARF-----GHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 381 ~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~-q~~~~-----~~~~~~~~~~~~~~eLae~L~~ 454 (817)
+..|.| ++|+||| .+||..+.+.++.+||| ||.+++++.. |..+. ....++ ..+.+..|-+-|..
T Consensus 64 kS~GNY--lvDvDGN----~lLDvYsQIsSvplGYn-~P~LvK~a~~p~~~~~lvnRPALg~fP--~kd~~~~l~~~ll~ 134 (484)
T KOG1405|consen 64 KSIGNY--LVDVDGN----RLLDVYSQISSVPLGYN-NPALVKAAQQPQNATMLVNRPALGNFP--PKDFAEKLRQSLLS 134 (484)
T ss_pred hhcCce--EEecCCC----eeehhhhhhcccccCCC-CHHHHHHhcChHHHHHHhccccccCCC--hhhHHHHHHHHHHh
Confidence 456875 9999999 99999999999999999 9999999873 33321 111111 13344445555555
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhc-cccccccccCCC-------ccccccceEEEEEcCCccCCccccccc
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSF-DHEVLVDFLGKD-------TTEKCIELKVLALKGSYHGDTLGAMEA 526 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~-~~G~~~~~~~~~-------~~~~~~r~~II~~~gsyHG~t~galsl 526 (817)
..|+| .+.|++.-+||+|||+|+|.|+-+|.. ++|.. +...+. .++......|++|+|+|||+|++++|.
T Consensus 135 ~APKG-~~~v~tm~cGs~aNEnA~K~afiwy~~k~rg~~-~~s~~e~eScm~n~aPg~P~lsvlsF~gaFHGR~~g~lst 212 (484)
T KOG1405|consen 135 IAPKG-QKQVITMLCGSCANENAYKTAFIWYRAKERGQA-GFSAEELESCMINQAPGAPDLSVLSFKGAFHGRTFGSLST 212 (484)
T ss_pred hCcch-HHHHHHHhccccccHHHHHHHHHHHHhhcCCCC-CCCHHHHHHHHhcCCCCCCceeeeeecccccccccccccc
Confidence 67877 788999999999999999999755542 33321 111100 113334568999999999999999999
Q ss_pred cCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHH
Q 003472 527 QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ 606 (817)
Q Consensus 527 t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~ 606 (817)
|.....+.. .-|.|+||...+. ...+| ... .+.+| ....+.|++.+|+
T Consensus 213 T~SKpIHKl--------diPaFdWPiA~fP----~ykYP--Lde------nv~~N------------~ked~~Cl~~Ve~ 260 (484)
T KOG1405|consen 213 THSKPIHKL--------DIPAFDWPIAPFP----RYKYP--LDE------NVAEN------------KKEDQGCLAEVED 260 (484)
T ss_pred ccCcccccc--------CCCCCCCCCCCCc----cccCC--hhh------hhhhh------------hhhhhhHHHHHHH
Confidence 977655542 2244666654321 11111 100 11122 2234567889999
Q ss_pred HHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC--CCce
Q 003472 607 NLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC--VPDI 684 (817)
Q Consensus 607 ~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv--~PDi 684 (817)
.|.++. .....|||+||||| |++||....+++|++.||++|++||+.+|+||||||-|-||++|+++||++ .||+
T Consensus 261 li~~~~--~k~~pVaaiIvEPI-QsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~ 337 (484)
T KOG1405|consen 261 LIVKYR--KKKKPVAAIIVEPI-QSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDV 337 (484)
T ss_pred HHHHHh--hcCCCeEEEEeech-hccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCccc
Confidence 998753 23357999999998 999999999999999999999999999999999999999999999999998 4899
Q ss_pred eeccccc-CCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHH
Q 003472 685 ACYGKLL-TGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELW 763 (817)
Q Consensus 685 vtlgK~L-ggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l 763 (817)
|||+|.+ +|||+ -. +.|... .++.+-+||.|+|.-+-...+++++|++ +.|.++++..|..|
T Consensus 338 vTFSKK~q~gGff------h~----~~frpn---~pYrifNTWmGdP~k~lll~~vv~~I~~----~~Ll~n~~~vG~~l 400 (484)
T KOG1405|consen 338 VTFSKKFQTGGFF------HD----EEFRPN---EPYRIFNTWMGDPSKNLLLEEVVQEIKR----EDLLNNVAHVGKAL 400 (484)
T ss_pred eehhhhhhcCccc------cC----cccCCC---chHHHhhhhcCChHHHHHHHHHHHHHhH----HHHHHHHHHHHHHH
Confidence 9999987 46752 12 223222 2456779999999999999999999999 67777888899999
Q ss_pred HHHHHHHHHcCCC-cceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 764 DLELIQQISSHRT-VQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 764 ~~~l~~~l~~~p~-V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.++|.++.+++|. +.++||+|.++++++.+. ...+.|+..+.-+|++
T Consensus 401 ~~gL~~Lq~~~p~~~~~~RGrGTF~a~d~ps~------~~Rdk~i~~~~~nGv~ 448 (484)
T KOG1405|consen 401 LKGLLELQAKYPGKINNLRGRGTFIAWDCPSG------SIRDKLILIARLNGVN 448 (484)
T ss_pred HHHHHHHHHhCchhhhcccccceEEEEeCCCh------HHHHHHHHHHHHcCce
Confidence 9999999999995 889999999999999887 5778888888888874
|
|
| >COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=326.44 Aligned_cols=198 Identities=31% Similarity=0.406 Sum_probs=173.8
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCC---CcHHHHHHhCCCCccccCCCccccc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHD---SDSRFLFTKLPSLSLRRNFPSSLIL 112 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~ 112 (817)
+|++||||||+||||||++|++|+++|+ .+|+++.+|||||+|+.+. +|+.++++..
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~-----~~g~~~~~~KPVqsG~~~~~~~~D~~~l~~~~--------------- 60 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALK-----QQGYSVAGYKPVQTGSEETAENSDALVLQRLS--------------- 60 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHH-----hCCCeeEEECceeeCCCCCCCCchHHHHHHhc---------------
Confidence 4789999999999999999999999995 8899999999999998765 4666666553
Q ss_pred ccchhhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHhHhcCCCC
Q 003472 113 SNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVV 192 (817)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~ 192 (817)
+.+.+|+. +|+|.|++|.|||+|++.+ |+.+
T Consensus 61 -----------------~~~~~~~~-------------------------------~~py~f~~P~sPhlAa~~e-g~~I 91 (223)
T COG0132 61 -----------------GLDLSYEL-------------------------------INPYRFKEPLSPHLAAELE-GRTI 91 (223)
T ss_pred -----------------CCCccccc-------------------------------ccceecCCCCCcHHHHhhc-CCcc
Confidence 33444544 8899999999999999999 9999
Q ss_pred ChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHH
Q 003472 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (817)
Q Consensus 193 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (817)
+.+.+.+.+.++.+. +|+||||||||+++|++++.+.+|+++.+++|||||++.++|+|||+++++|
T Consensus 92 ~~~~l~~~l~~l~~~-------------~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~LGtINHtlLt~e 158 (223)
T COG0132 92 DLEKLSQGLRQLLKK-------------YDLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKLGTINHTLLTVE 158 (223)
T ss_pred cHHHHHHHHHhhhcc-------------cCEEEEeCCCceeeecCCcccHHHHHHHcCCCEEEEecCCccHHHHHHHHHH
Confidence 999999998887755 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcEEEEEEccCCCC------CHHHHHHhhcCCCcEEe-cCCCCCCC
Q 003472 273 SLKLRGYDVVAVVFEDHGLV------NEVPLMSYLRNRVPVLV-LPPLPQDS 317 (817)
Q Consensus 273 ~l~~~~~~v~gvi~n~~~~~------~~~~l~~~~~~~~pvlg-iP~~~~~~ 317 (817)
+++++|+++.|||+|+..+. ....+++.+ +.|++| +|+.++..
T Consensus 159 al~~~gl~l~G~I~n~~~~~~~~~~~~~~~l~~~~--~~p~~g~~p~~~~~~ 208 (223)
T COG0132 159 ALRARGLPLAGWVANGINPELDHYAEINATLLKRI--GAPLLGIIPYLPESE 208 (223)
T ss_pred HHHHCCCCEEEEEEccCCCchhHHHHHHHHHHHhc--CCCccccccCCcccc
Confidence 99999999999999998322 222455666 999999 99987754
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=342.13 Aligned_cols=338 Identities=27% Similarity=0.369 Sum_probs=264.5
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|.+ +||.||+ +||||++|+|+++|||+ ||.|.+|+.++++++.+.. ..+.++...+|+++|++
T Consensus 9 ~~~~~~~~~g~~--~~~~~g~----~~id~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~ 80 (379)
T TIGR00707 9 LPVKIVRGKGAY--VYDVNGK----EYLDFVAGIAVNSLGHA-HPKLVEALKEQLEKLVHVS-NLYYTEPQEELAEKLVE 80 (379)
T ss_pred CCccEEEeecCE--EEeCCCC----EEEEcCcchhhccCCCC-CHHHHHHHHHHHhhccccc-cccCCHHHHHHHHHHHh
Confidence 467889988875 8999999 99999999999999999 9999999999999876533 23467889999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
+.+ .+++++++||++|++.|++++ |.+++..| +.+.+|++++.+|||.+..+...++...+..
T Consensus 81 ~~g---~~~~~~~~sg~~a~~~a~~~~-~~~~~~~~-------------~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~ 143 (379)
T TIGR00707 81 HSG---ADRVFFCNSGAEANEAALKLA-RKYTGDKG-------------KEKKKIIAFENSFHGRTMGALSATGQPKYQK 143 (379)
T ss_pred hCC---CCEEEEeCCcHHHHHHHHHHH-HHHhhccC-------------CCCCeEEEECCCcCCccHHHHHhcCChhhhc
Confidence 987 469999999999999999998 67665321 2246899999999999998887776443221
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. ..+.. .+... ++|||. +.+++.+.
T Consensus 144 ~-~~~~~---------------~~~~~----------------~~~~d~------------------~~l~~~~~----- 168 (379)
T TIGR00707 144 G-FEPLV---------------PGFSY----------------APYNDI------------------ESLKKAID----- 168 (379)
T ss_pred c-CCCCC---------------CCcee----------------eCCCCH------------------HHHHHHhh-----
Confidence 1 00000 00000 124443 44555554
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
.++.+|++||+ ++.+|..+++.+++++|+++|++||+++|+||+++|||++|+++..+.+++.||++|+||++++|
T Consensus 169 ---~~~~~v~~~p~-~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~t~sK~~~~G 244 (379)
T TIGR00707 169 ---DETAAVIVEPI-QGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIITLAKGLGGG 244 (379)
T ss_pred ---hCeeEEEEEcc-ccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEEEEcccccCC
Confidence 25789999998 99999988899999999999999999999999999999999877777889999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+... .++.+|++||++++++.++|+.++++++.+++.++.+.+ .+++.+.....
T Consensus 245 -~riG~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~ 313 (379)
T TIGR00707 245 -VPIGATLAKEEVAEAFTPG------DHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYF----KERLEELGKNY 313 (379)
T ss_pred -cccEEEEEcHHHHhhhcCC------CCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHHHhhC
Confidence 8999999999999888532 366789999999999999999997655555555544444 44444444444
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+ +..+++.|.++.+++.++ ...+...++++||+
T Consensus 314 ~-~~~~~~~g~~~~~~~~~~--------~~~~~~~l~~~Gv~ 346 (379)
T TIGR00707 314 P-NKEVRGKGLMLGIELEAP--------CKDIVKKALEKGLL 346 (379)
T ss_pred C-CCccccCceEEEEEecCc--------HHHHHHHHHHCCcE
Confidence 3 356778899999988643 25778888999974
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=298.37 Aligned_cols=197 Identities=35% Similarity=0.466 Sum_probs=162.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhCCCCccccCCCcccccccchh
Q 003472 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSIL 117 (817)
Q Consensus 38 ~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (817)
|+|||+||+|++|||+||+||+++|. ++|.+|+|||||+++...+.|..++.+.+ ++
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~-----~~g~~v~~~KPi~~~~~~d~d~~~~~~~~-~~----------------- 57 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALR-----RRGIKVGYFKPIQTGPEDDEDAELIRELF-GL----------------- 57 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHH-----HTTSEEEEEEEEEESCCCSSHHHHHHHHC-CT-----------------
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHH-----hCCCceEEEeeeEecCCCCchHHHHHHHh-CC-----------------
Confidence 58999999999999999999999995 89999999999999988888999887765 33
Q ss_pred hhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHhHhcCCCCChHHH
Q 003472 118 FSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKV 197 (817)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~i 197 (817)
+.++ ...++|.|++|.+|+++++.+ +..+..+++
T Consensus 58 --------------~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i 91 (199)
T PF13500_consen 58 --------------SEPP-------------------------------DDPSPYTFDEPASPHLAAELE-GVDIDLERI 91 (199)
T ss_dssp --------------CCCH-------------------------------HHHECEEESSSS-HHHHHHHH-T----HHHH
T ss_pred --------------Cccc-------------------------------ccccccccCcccCHHHHhhcc-CCcccHHHH
Confidence 1111 226799999999999999988 777777777
Q ss_pred HHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhC
Q 003472 198 IETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLR 277 (817)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~ 277 (817)
. ++++.++ +|++||||+||+++|...+.+|+|||+.+++|||||++.++|+++|++++++.++.+
T Consensus 92 ~--~~~l~~~-------------~D~vlVEGag~~~~~~~~~~~n~dia~~L~a~vIlV~~~~~g~i~~~l~~~~~~~~~ 156 (199)
T PF13500_consen 92 I--YKELAEE-------------YDVVLVEGAGGLMVPIFSGDLNADIAKALGAPVILVASGRLGTINHTLLTIEALKQR 156 (199)
T ss_dssp H--HHHCHTT-------------TCEEEEEESSSTTSECCTTEEHHHHHHHHT-EEEEEEESSTTHHHHHHHHHHHHHCT
T ss_pred H--HHHHhhc-------------CCEEEEeCCcccCcccccChHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHHHHhc
Confidence 6 5555544 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEccC-CCCCHHHHHHhhcCCCcEEe-cCCCCCCCcch
Q 003472 278 GYDVVAVVFEDH-GLVNEVPLMSYLRNRVPVLV-LPPLPQDSSND 320 (817)
Q Consensus 278 ~~~v~gvi~n~~-~~~~~~~l~~~~~~~~pvlg-iP~~~~~~~~~ 320 (817)
|++++|||+|++ .+++.+++++++ ++||+| ||+.+++++|+
T Consensus 157 g~~v~GvI~N~~~~~~~~~~l~~~~--~i~vlg~iP~~~~L~~p~ 199 (199)
T PF13500_consen 157 GIRVLGVILNRVPEPENLEALREKS--GIPVLGVIPEDPDLSAPT 199 (199)
T ss_dssp TS-EEEEEEEECTCCHHHHHHHHHH--CCEECE---SSTT-----
T ss_pred CCCEEEEEEECCCCHHHHHHHHHhC--CCCEEEECCCCcccccCC
Confidence 999999999998 556888899998 999999 99999998764
|
... |
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-31 Score=299.08 Aligned_cols=314 Identities=10% Similarity=-0.032 Sum_probs=220.0
Q ss_pred eEEEEeecCceeEEEeCccCccccceeeccccccccCCC-CCCCHHHHHHHHHHHHhccc--c-CC-CCCCChHHHHHHH
Q 003472 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPD-ATLQIELARDMGYTAARFGH--V-MF-PENVYEPALECAE 450 (817)
Q Consensus 376 p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LG-h~~hP~V~~Ai~~q~~~~~~--~-~~-~~~~~~~~~eLae 450 (817)
++.+.+++|. ++||.||+ +||||+| +.++| |+ ||+|++|+++|++++++ . .. ....++...+|++
T Consensus 29 ~~~~~~~~G~--~~~d~~g~----~~ld~~s---~~~lgl~~-~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~ 98 (402)
T PRK07505 29 GLTVGEREGI--LITLADGH----TFVNFVS---CSYLGLDT-HPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEE 98 (402)
T ss_pred cceeeccCCc--cEEecCCc----eEEEeec---CCccCCCC-CHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHH
Confidence 4577788786 59999999 9999998 67999 99 99999999999998752 1 11 1134778999999
Q ss_pred HHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCC
Q 003472 451 LLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS 530 (817)
Q Consensus 451 ~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~ 530 (817)
+|+++++ . ++++++||++||+.|+|++ +.... . .++.++|+++++|||+.... .
T Consensus 99 ~la~~~~---~-~~~~~~sG~~a~~~ai~~~-~~~~~-~--------------~~~~~vi~~~~~~H~s~~~~------~ 152 (402)
T PRK07505 99 ALSELFG---A-SVLTFTSCSAAHLGILPLL-ASGHL-T--------------GGVPPHMVFDKNAHASLNIL------K 152 (402)
T ss_pred HHHHHhC---C-CEEEECChHHHHHHHHHHH-Hhccc-C--------------CCCCCEEEEchhhhHhHHhh------h
Confidence 9999987 3 7888999999999999998 32110 0 23568999999999943211 1
Q ss_pred CCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhc
Q 003472 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610 (817)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~ 610 (817)
..... + + ++..+ +|+|. +.+++.+++
T Consensus 153 ~~~~~---------~-----~------~v~~~----------------~~~d~------------------~~l~~~~~~ 178 (402)
T PRK07505 153 GICAD---------E-----T------EVETI----------------DHNDL------------------DALEDICKT 178 (402)
T ss_pred hhhhc---------C-----C------eEEEe----------------CCCCH------------------HHHHHHHhc
Confidence 00000 0 0 11111 13443 345555542
Q ss_pred CCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeee--eccccccccchhhhcCC-CCcee--
Q 003472 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF--TGFWRLGVETTADLLGC-VPDIA-- 685 (817)
Q Consensus 611 ~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~--TGfGRtG~~~a~e~~gv-~PDiv-- 685 (817)
...+++|+||+ ++.|++.+ +++|+++|++||++||+||+| +|+||+|.+++.+++++ .||.+
T Consensus 179 -------~~~~~vl~~p~-~~~G~~~~-----~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~ 245 (402)
T PRK07505 179 -------NKTVAYVADGV-YSMGGIAP-----VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTII 245 (402)
T ss_pred -------CCCEEEEEecc-cccCCcCC-----HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEE
Confidence 34789999998 88876554 799999999999999999998 78999999988899998 78865
Q ss_pred --ecccccCCCCCcceEEE-echHHHhhhcCCCccceeecccCCCCC--HHHHHHHHHHHHHhcCcCchhcHHHHHHHHH
Q 003472 686 --CYGKLLTGGVIPLAATL-ATNAVFDSFVGDSKLKALLHGHSYSAH--ALGCAAAAKSIKWFKDPQTNHNIIPERRILR 760 (817)
Q Consensus 686 --tlgK~LggGy~PlsAvl-~s~~i~d~~~~~~~~~~~~h~~T~~gn--Pla~AAAlA~L~~l~~~~l~~~l~~~~~~lg 760 (817)
+++|++|++ .|.++ .++++.+.+.. +.+.+||+++ +++|++++++++++.++ .+.++.+.+.
T Consensus 246 ~~s~sK~~~~~---Gg~~~~~~~~~~~~~~~------~~~~~t~~~~~~~~a~aa~~a~l~~~~~~----~~~~~~~~l~ 312 (402)
T PRK07505 246 AASLGKAFGAS---GGVIMLGDAEQIELILR------YAGPLAFSQSLNVAALGAILASAEIHLSE----ELDQLQQKLQ 312 (402)
T ss_pred EEechhhhhcc---CeEEEeCCHHHHHHHHH------hCCCceeCCCCCHHHHHHHHHHHHHHhcc----CcHHHHHHHH
Confidence 799998863 13344 47788888743 2467788776 58999999999988763 3333333443
Q ss_pred HHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 761 ELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 761 ~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+.. +... ...+++|.|+++......+ ......+...++++||+
T Consensus 313 ~~~~~-~~~~-----~~~~~~g~~~~i~~~~~~~-----~~~~~~~~~~l~~~Gi~ 357 (402)
T PRK07505 313 NNIAL-FDSL-----IPTEQSGSFLPIRLIYIGD-----EDTAIKAAKQLLDRGFY 357 (402)
T ss_pred HHHHH-HHHH-----HHhcCCCCCCCEEEEEeCC-----HHHHHHHHHHHHHCCCe
Confidence 33221 1111 1234688888764433222 12456788999999985
|
|
| >PRK12374 putative dithiobiotin synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=273.70 Aligned_cols=201 Identities=21% Similarity=0.220 Sum_probs=162.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCC------CCcHHHHHHhCCCCccccCCCccc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH------DSDSRFLFTKLPSLSLRRNFPSSL 110 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~------~~d~~~~~~~~~~~~~~~~~~~~~ 110 (817)
|++|||+||+|++|||+||++|+++|+ ++|++|+|||||++|+.. +.|+.++.+.+
T Consensus 2 ~~~ifIt~t~t~vGKT~vt~~L~~~l~-----~~g~~v~~~KPi~~g~~~~~~~~~~~D~~~l~~~~------------- 63 (231)
T PRK12374 2 LKRFFITGTDTSVGKTVVSRALLQALA-----SQGKTVAGYKPVAKGSKETPEGLRNKDALVLQSVS------------- 63 (231)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEECccccCCccCCCCCchHHHHHHHHhc-------------
Confidence 568999999999999999999999994 899999999999998632 23444444432
Q ss_pred ccccchhhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHhHhcCC
Q 003472 111 ILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGG 190 (817)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~ 190 (817)
..+.|++. ++||.|+.+. +++.+ +.
T Consensus 64 -------------------~~~~~~~~-------------------------------~~p~~~~~~~----a~~~~-~~ 88 (231)
T PRK12374 64 -------------------SIELPYEA-------------------------------VNPIALSEEE----SSVAH-SC 88 (231)
T ss_pred -------------------CCCCCHHh-------------------------------ccCeecCCCc----ChHHc-CC
Confidence 33344433 6778776543 34555 66
Q ss_pred CCChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHH
Q 003472 191 VVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISA 270 (817)
Q Consensus 191 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~ 270 (817)
.++.++|.+.++++.++ +|+||||||||+++|+.......|+++.+++|+|||++.++|++||++++
T Consensus 89 ~i~~~~i~~~~~~l~~~-------------~D~VlVEGaGgl~~p~~~~~~~~d~~~~~~~pvilV~~~~lg~in~~lLt 155 (231)
T PRK12374 89 PINYTLMSNGLANLSEK-------------VDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLT 155 (231)
T ss_pred cCCHHHHHHHHHHHHhh-------------CCEEEEECCCCcceeccCcccHHHHHHHhCCCEEEEECCCcChHHHHHHH
Confidence 77889999999876654 99999999999999998888899999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEEEccCCCC------CHHHHHHhhcCCCcEEe-cCCCCCCCcchhhhhh
Q 003472 271 YESLKLRGYDVVAVVFEDHGLV------NEVPLMSYLRNRVPVLV-LPPLPQDSSNDLMEWF 325 (817)
Q Consensus 271 ~~~l~~~~~~v~gvi~n~~~~~------~~~~l~~~~~~~~pvlg-iP~~~~~~~~~~~~~l 325 (817)
++.++.++++++|||+|++.+. +.+.+++.. ++|++| ||+.+.+....+.+|+
T Consensus 156 ~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~l~~~~--~~~~lg~iP~~~~~~~~~~~~~l 215 (231)
T PRK12374 156 AQAIANDGLPLIGWVANRINPGLAHYAEIIDVLGKKL--PAPLIGELPYLPRAEQRELGQYI 215 (231)
T ss_pred HHHHHhCCCcEEEEEEeCccCchhhhhhHHHHHHHhc--CCCEEEEeCCCCCCChHHHHhhc
Confidence 9999999999999999998432 234455555 899999 9999887655555554
|
|
| >PRK00090 bioD dithiobiotin synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=263.15 Aligned_cols=203 Identities=29% Similarity=0.382 Sum_probs=169.7
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCC---CCCcHHHHHHhCCCCccccCCCcccccccc
Q 003472 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYP---HDSDSRFLFTKLPSLSLRRNFPSSLILSNS 115 (817)
Q Consensus 39 ~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~---~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (817)
.|||+||+|++|||+||++|+++|+ ++|++|+|||||++|.. .+.|..++.+.+ ++
T Consensus 1 ~i~I~~t~t~~GKT~vs~~L~~~l~-----~~g~~v~~~KPv~~g~~~~~~~~d~~~~~~~~-~~--------------- 59 (222)
T PRK00090 1 RLFVTGTDTDVGKTVVTAALAQALR-----EAGYSVAGYKPVQSGCEETDRNGDALALQRLS-GL--------------- 59 (222)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHH-----HcCCceEEEeeEecCCCCCCCcHHHHHHHHHc-CC---------------
Confidence 4899999999999999999999995 89999999999999864 244777766654 22
Q ss_pred hhhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHhHhcCCCCChH
Q 003472 116 ILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDS 195 (817)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~ 195 (817)
..++ ..++++.|..|.+|+.++..+ +..++.+
T Consensus 60 ----------------~~~~-------------------------------~~~~~~~~~~~~sp~~a~~~~-~~~~~~~ 91 (222)
T PRK00090 60 ----------------PLDY-------------------------------EDVNPYRFEEPLSPHLAAALE-GVAIDLE 91 (222)
T ss_pred ----------------CCCh-------------------------------hhcCceeeCCCCCHHHHHHHh-CCCCCHH
Confidence 1112 236799999999999999988 7788889
Q ss_pred HHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 003472 196 KVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK 275 (817)
Q Consensus 196 ~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~ 275 (817)
++.+.++++.++ +|+|||||+||+.+|+..+.+++|+++.+++|||+|++.+++++++++.+++.++
T Consensus 92 ~i~~~~~~l~~~-------------~D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~~~~~~~i~~~~~~i~~l~ 158 (222)
T PRK00090 92 KISAALRRLAQQ-------------YDLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLLTLEAIR 158 (222)
T ss_pred HHHHHHHHHHhh-------------CCEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHH
Confidence 999999876544 9999999999999998877899999999999999999999999999999999999
Q ss_pred hCCCcEEEEEEccCCCC-------CHHHHHHhhcCCCcEEe-cCCCCCCCcchhhhhh
Q 003472 276 LRGYDVVAVVFEDHGLV-------NEVPLMSYLRNRVPVLV-LPPLPQDSSNDLMEWF 325 (817)
Q Consensus 276 ~~~~~v~gvi~n~~~~~-------~~~~l~~~~~~~~pvlg-iP~~~~~~~~~~~~~l 325 (817)
.++.++.|+|+|++... +.+.+++++ ++|++| +|+++......+.+++
T Consensus 159 ~~~~~i~gvIlN~~~~~~~~~~~~~~~~l~~~~--gi~vlg~ip~~~~~~~~~~~~~~ 214 (222)
T PRK00090 159 ARGLPLAGWVANGIPPEPGLRHAENLATLERLL--PAPLLGELPYLAEAELAAAAEYL 214 (222)
T ss_pred HCCCCeEEEEEccCCCcchhHHHHHHHHHHHHc--CCCeEEecCCCCCcchHHHHhhC
Confidence 99999999999998433 455666666 999999 9997665433444443
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-28 Score=274.89 Aligned_cols=296 Identities=13% Similarity=0.038 Sum_probs=213.9
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC----CCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E 475 (817)
++|+|+| |.+||.++||+|++|+++|++++++.. .....++...+|+++|++++|. ++++|++||++||+
T Consensus 46 ~~~~~~s---n~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~---~~~~~~~SG~~An~ 119 (406)
T PRK13393 46 EVTVWCS---NDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGK---EAALLFTSGYVSNW 119 (406)
T ss_pred cEEEeec---ccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCC---CcEEEeCCcHHHHH
Confidence 8999999 999999669999999999999987532 1223466889999999999983 68999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccc
Q 003472 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (817)
Q Consensus 476 ~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (817)
+|++...+.+ +.++|.++..|||++..++..++....
T Consensus 120 ~ai~~l~~~~--------------------~g~~I~~~~~~H~s~~~~~~~~g~~~~----------------------- 156 (406)
T PRK13393 120 AALSTLGSRL--------------------PGCVILSDELNHASMIEGIRHSRAEKR----------------------- 156 (406)
T ss_pred HHHHHhhcCC--------------------CCCEEEEccchhHHHHHHHHHcCCeEE-----------------------
Confidence 9999541211 236899999999999887766532100
Q ss_pred cCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003472 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (817)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~ 635 (817)
. ++|+|. +.+++.++. ..+.++++|++|++ +++.|.
T Consensus 157 -----~----------------~~~~d~------------------~~l~~~l~~----~~~~~~~~v~~~~v-~~~~G~ 192 (406)
T PRK13393 157 -----I----------------FRHNDP------------------ADLERKLSD----LDPHRPKLVAFESV-YSMDGD 192 (406)
T ss_pred -----E----------------eCCCCH------------------HHHHHHHHh----ccCCCCEEEEEcCC-CCCCCc
Confidence 0 113332 234445543 11346789999998 999999
Q ss_pred ccCCHHHHHHHHHHHhhcCCcEEEeeeee-cc-ccccccchhhhcCCC--Ccee--ecccccC--CCCCcceEEEechHH
Q 003472 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGCV--PDIA--CYGKLLT--GGVIPLAATLATNAV 707 (817)
Q Consensus 636 ~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-Gf-GRtG~~~a~e~~gv~--PDiv--tlgK~Lg--gGy~PlsAvl~s~~i 707 (817)
+.| +++|+++|+++|+++|+||+|+ |+ |++|.++ .+++++. +||+ |+||++| ||| +++++++
T Consensus 193 ~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~-~~~~~~~~~~~i~~~tlsKa~g~~GG~-----~~~~~~~ 262 (406)
T PRK13393 193 IAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGI-AEREGLADRLTIIEGTLAKAFGVMGGY-----ITGSAAL 262 (406)
T ss_pred hhC----HHHHHHHHHHcCCEEEEECCccccccCCCCCch-hhhcCCCCCCeEEEEeCchhhcccCce-----eeCCHHH
Confidence 988 9999999999999999999997 77 8999766 4777875 6887 9999998 565 6788998
Q ss_pred HhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEE
Q 003472 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLC 787 (817)
Q Consensus 708 ~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~ 787 (817)
++.+..... .+.+|++++|++|+++.++|+.+++... . .++....+++|.+.+.+. ..+ .+++.|.|+
T Consensus 263 ~~~l~~~~~----~~~~t~~~~p~~~aa~~aaL~~~~~~~~-~--~~~~~~~~~~l~~~L~~~--g~~---~~~~~~~i~ 330 (406)
T PRK13393 263 CDFIRSFAS----GFIFTTSLPPAVAAGALASVRHLKASSA-E--RERHQDRVARLRARLDKA--GIP---HLPNPSHIV 330 (406)
T ss_pred HHHHHHhCc----CceecCccCHHHHHHHHHHHHHHhhCHH-H--HHHHHHHHHHHHHHHHHc--CCC---cCCCCCCeE
Confidence 888754321 1235788999999999999999865321 1 122233444444443321 233 246788898
Q ss_pred EEEEecCCCCCCcchHHHHHHHHHH-cCCC
Q 003472 788 AIELQAAGCNAGYCLIELFLYNFLT-TGMH 816 (817)
Q Consensus 788 gIel~~~~~~~~~~~~~~~~~~~l~-~Gv~ 816 (817)
.+.+.+. .....+...+++ +||+
T Consensus 331 ~v~~~~~------~~~~~l~~~L~~~~Gi~ 354 (406)
T PRK13393 331 PVMVGDP------VLCKQISDELLDRYGIY 354 (406)
T ss_pred EEEeCCH------HHHHHHHHHHHHhCCEE
Confidence 8866332 245667777887 4875
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=282.71 Aligned_cols=320 Identities=14% Similarity=0.159 Sum_probs=223.0
Q ss_pred eEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCC----CCCCChHHHHHHHH
Q 003472 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAEL 451 (817)
Q Consensus 376 p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~----~~~~~~~~~eLae~ 451 (817)
.++++++.|.+ ++ .+|+ +||||.+ +.++|...||+|++|+.+++++++.... ..++++.+.+|+++
T Consensus 93 ~~~~~~~~G~~--i~-~~G~----~~id~~s---~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~ 162 (481)
T PLN02822 93 PPVLESAAGPH--TI-INGK----DVVNFAS---ANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETK 162 (481)
T ss_pred CCceecCCCCe--EE-ECCc----eEEEeEC---CCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHH
Confidence 44788888876 55 6999 9999998 5566765599999999999999875321 23467889999999
Q ss_pred HHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCC
Q 003472 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (817)
Q Consensus 452 L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~ 531 (817)
|+++++.+ +.++|+ +|+.++.+|++.. .+|.++|.++..||+++..++.+++...
T Consensus 163 La~~~~~~--~~i~~s-~G~~a~~sai~a~----------------------~~~gd~Ii~d~~~H~s~~~~~~ls~~~~ 217 (481)
T PLN02822 163 IAKFLGTP--DSILYS-YGLSTIFSVIPAF----------------------CKKGDIIVADEGVHWGIQNGLYLSRSTI 217 (481)
T ss_pred HHHHhCCC--CEEEEC-CHHHHHHHHHHHh----------------------CCCCCEEEEeCCccHHHHHHHHHcCCeE
Confidence 99999853 445555 5666888877744 2345788899999999888777764321
Q ss_pred CCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcC
Q 003472 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (817)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (817)
. . +.|||+ +.++..+++.
T Consensus 218 ~----------------------------~----------------~~~nd~------------------~~l~~~l~~~ 235 (481)
T PLN02822 218 V----------------------------Y----------------FKHNDM------------------ESLRNTLEKL 235 (481)
T ss_pred E----------------------------E----------------ECCCCH------------------HHHHHHHHHH
Confidence 0 0 114543 1222222211
Q ss_pred CCC-CCCCcE-EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee--ccccccccchhhhcCC---CCce
Q 003472 612 PGL-KVSGCI-GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT--GFWRLGVETTADLLGC---VPDI 684 (817)
Q Consensus 612 ~~~-~~~~~i-AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T--GfGRtG~~~a~e~~gv---~PDi 684 (817)
... ....++ ++||+|++ +++.|.+.+ +++|+++|++||++||+||+|+ .+||+|.+ .++++|+ +|||
T Consensus 236 ~~~~~~~~~~~~~Ivve~i-~~~~G~i~~----L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G-~~e~~~v~~~~~di 309 (481)
T PLN02822 236 TAENKRKKKLRRYIVVEAI-YQNSGQIAP----LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRG-LSEHFGVPIEKIDI 309 (481)
T ss_pred hhhhcccCCCcEEEEEecC-CCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCC-hHHHcCCCCCCCeE
Confidence 000 001234 89999998 899999988 8999999999999999999998 46788876 6799998 7899
Q ss_pred ee--cccccC--CCCCcceEEEechHHHhhhcCCCccceeecccCCCCC--HHHHHHHHHHHHHhcC-cCchhcHHHHHH
Q 003472 685 AC--YGKLLT--GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAH--ALGCAAAAKSIKWFKD-PQTNHNIIPERR 757 (817)
Q Consensus 685 vt--lgK~Lg--gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gn--Pla~AAAlA~L~~l~~-~~l~~~l~~~~~ 757 (817)
++ |||++| ||| +++++++++.+... .+++||+++ |..|+||+++|+.+++ ++..++++++++
T Consensus 310 i~~s~sKalg~~GG~-----i~g~~~ii~~~~~~------~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~ 378 (481)
T PLN02822 310 ITAAMGHALATEGGF-----CTGSARVVDHQRLS------SSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIA 378 (481)
T ss_pred EEecchhhhhhCCeE-----EEcCHHHHHHHHhc------CCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 87 889998 774 88999999987532 477899887 9999999999999865 445555665555
Q ss_pred HHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCC--CCcchHHHHHHHHH-HcCCC
Q 003472 758 ILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN--AGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 758 ~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~--~~~~~~~~~~~~~l-~~Gv~ 816 (817)
.+.+ ++.+. ...+. ..-+.+.++-+.+.+.... .+......|...++ ++||+
T Consensus 379 ~l~~----~L~~~-~g~~~--~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~ 433 (481)
T PLN02822 379 LLHK----GLSDI-PGLSI--GSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVL 433 (481)
T ss_pred HHHH----HHHhc-CCccc--CCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEE
Confidence 5444 33221 11111 1123466667777432100 11134567888988 88875
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=262.90 Aligned_cols=296 Identities=16% Similarity=0.098 Sum_probs=210.1
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCC----CCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~----~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E 475 (817)
++++|+| |++||.+.||+|++|+.+|++++++... ..+.++...+|+++|+++++. +++++++||++||+
T Consensus 46 ~~~~~~s---n~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~---~~~l~~~sG~~an~ 119 (402)
T TIGR01821 46 DVTVWCS---NDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGK---ESALVFTSGYVAND 119 (402)
T ss_pred eEEEeEc---cCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCC---CeEEEECchHHHHH
Confidence 8999999 9999998899999999999999876421 224578899999999999973 67999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccc
Q 003472 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (817)
Q Consensus 476 ~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (817)
.|++++. .+ .+..+|..+..||+++..++..++.+...
T Consensus 120 ~ai~~l~-~~-------------------~~~~~v~~~~~~h~s~~~~~~~~g~~~~~---------------------- 157 (402)
T TIGR01821 120 ATLATLA-KI-------------------IPGCVIFSDELNHASMIEGIRHSGAEKFI---------------------- 157 (402)
T ss_pred HHHHHhh-CC-------------------CCCCEEEEcchHhHHHHHHHHHcCCeEEE----------------------
Confidence 9999982 11 12367888889999887776655321100
Q ss_pred cCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003472 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (817)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~ 635 (817)
++++|. +.+++.++. ..++++++|++|++ ++..|.
T Consensus 158 ----------------------~~~~d~------------------~~l~~~l~~----~~~~~~~~v~~e~~-~~~~G~ 192 (402)
T TIGR01821 158 ----------------------FRHNDV------------------AHLEKLLQS----VDPNRPKIIAFESV-YSMDGD 192 (402)
T ss_pred ----------------------ECCCCH------------------HHHHHHHHh----ccCCCCeEEEEcCC-CCCCCC
Confidence 012332 345555543 12335789999998 899999
Q ss_pred ccCCHHHHHHHHHHHhhcCCcEEEeeeee-c-cccccccchhhhcCC--CCcee--ecccccC--CCCCcceEEEechHH
Q 003472 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGC--VPDIA--CYGKLLT--GGVIPLAATLATNAV 707 (817)
Q Consensus 636 ~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-G-fGRtG~~~a~e~~gv--~PDiv--tlgK~Lg--gGy~PlsAvl~s~~i 707 (817)
+.| +++|+++|++||++||+||+|+ | +|++|.+ ..+++++ .||++ |++|++| ||| +++++++
T Consensus 193 ~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g~g-~~~~~~~~~~~div~~t~sKa~g~~GG~-----i~~~~~~ 262 (402)
T TIGR01821 193 IAP----IEEICDLADKYGALTYLDEVHAVGLYGPRGGG-IAERDGLMHRIDIIEGTLAKAFGVVGGY-----IAASRKL 262 (402)
T ss_pred ccC----HHHHHHHHHHcCCEEEEeCcccccccCCCCCc-cchhccCCCCCeEEEEechhhhccCCce-----eecCHHH
Confidence 887 9999999999999999999997 5 3566653 3467776 47888 9999998 564 7889999
Q ss_pred HhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEE
Q 003472 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLC 787 (817)
Q Consensus 708 ~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~ 787 (817)
++.+..... .+.+|++.+|++|++++++|+.+++. +.+.++....++++.+.+.+. ..+.+. ..|.++
T Consensus 263 ~~~l~~~~~----~~~~t~~~~~~~~aaa~aaL~~~~~~---~~~~~~~~~~~~~l~~~L~~~--g~~~~~---~~~~i~ 330 (402)
T TIGR01821 263 IDAIRSYAP----GFIFTTSLPPAIAAGATASIRHLKES---QDLRRAHQENVKRLKNLLEAL--GIPVIP---NPSHIV 330 (402)
T ss_pred HHHHHHhCc----CceecCcCCHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHHHHc--CCCcCC---CCCCEE
Confidence 988854221 13457789999999999999999763 222333334444444443321 233332 246677
Q ss_pred EEEEecCCCCCCcchHHHHHHHHHH-cCCC
Q 003472 788 AIELQAAGCNAGYCLIELFLYNFLT-TGMH 816 (817)
Q Consensus 788 gIel~~~~~~~~~~~~~~~~~~~l~-~Gv~ 816 (817)
.+.+.+. .....+..++++ +||+
T Consensus 331 ~i~~~~~------~~a~~~~~~L~~~~Gi~ 354 (402)
T TIGR01821 331 PVIIGDA------ALCKKVSDLLLNKHGIY 354 (402)
T ss_pred EEEeCCH------HHHHHHHHHHHhcCCEE
Confidence 7765322 244567777775 4874
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-27 Score=260.38 Aligned_cols=298 Identities=15% Similarity=0.102 Sum_probs=232.5
Q ss_pred ccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC----CCCCCChHHHHHHHHHHhhcCCCCcceEEEeC
Q 003472 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSD 468 (817)
Q Consensus 393 dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~ 468 (817)
+|+ +++||+| |++||.++||+|++|+.+++++++... ...++++.+.+|+++|++++| .+++++++
T Consensus 37 ~~~----~~~nf~S---NdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g---~e~al~f~ 106 (388)
T COG0156 37 DGR----KVLNFCS---NDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLG---AEAALLFS 106 (388)
T ss_pred CCc----eeEeeec---cCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhC---CCcEEEEc
Confidence 477 9999999 999999999999999999999976543 234568999999999999998 57999999
Q ss_pred ChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCcccc
Q 003472 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (817)
Q Consensus 469 SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~ 548 (817)
||+.||.+++... .++.++|..|.-.|.+.+.+..+++...++.
T Consensus 107 SGy~AN~~~i~~l----------------------~~~~dli~~D~lnHASiidG~rls~a~~~~f-------------- 150 (388)
T COG0156 107 SGFVANLGLLSAL----------------------LKKGDLIFSDELNHASIIDGIRLSRAEVRRF-------------- 150 (388)
T ss_pred ccchhHHHHHHHh----------------------cCCCcEEEEechhhhhHHHHHHhCCCcEEEe--------------
Confidence 9999999999988 3457999999999999999999886543321
Q ss_pred CCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 003472 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (817)
Q Consensus 549 ~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV 628 (817)
.|||+ ++||+.|++.. ..++ +...|++|.|
T Consensus 151 ------------------------------~HnD~------------------~~Le~~l~~~~-~~~~-~~~~IvtegV 180 (388)
T COG0156 151 ------------------------------KHNDL------------------DHLEALLEEAR-ENGA-RRKLIVTEGV 180 (388)
T ss_pred ------------------------------cCCCH------------------HHHHHHHHhhh-ccCC-CceEEEEecc
Confidence 16664 67888887521 0122 5679999998
Q ss_pred cccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc--cchhhhcCCCCc---ee--ecccccCC--CCCcce
Q 003472 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVPD---IA--CYGKLLTG--GVIPLA 699 (817)
Q Consensus 629 ~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~--~~a~e~~gv~PD---iv--tlgK~Lgg--Gy~Pls 699 (817)
.+|.|.+.| |++|.+||++||+.|++||+| |+|-.|+ .+.++++|+.|+ |+ ||||+||+ ||
T Consensus 181 -fSMdGdiAp----L~~l~~L~~ky~a~L~VDEAH-a~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~Gg~---- 250 (388)
T COG0156 181 -FSMDGDIAP----LPELVELAEKYGALLYVDEAH-AVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSGGY---- 250 (388)
T ss_pred -ccCCCCcCC----HHHHHHHHHHhCcEEEEEccc-cccccCCCCccHHHHhCCCCccceEEEEEchhhhcccCce----
Confidence 899999999 999999999999999999999 6777886 567789999865 33 99999994 54
Q ss_pred EEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcC-cCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcc
Q 003472 700 ATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIPERRILRELWDLELIQQISSHRTVQ 778 (817)
Q Consensus 700 Avl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~-~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~ 778 (817)
+++++.+.|++...++ .+.+|.+-.|..++++.++|+++++ ++.+++++++++.+.+.+... .++.
T Consensus 251 -v~g~~~~~d~L~~~ar----~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~------~~~~-- 317 (388)
T COG0156 251 -IAGSAALIDYLRNRAR----PFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKAL------GLVL-- 317 (388)
T ss_pred -eeCcHHHHHHHHHhCC----ceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc------CCcc--
Confidence 9999999999987543 4678889999999999999999975 567788888777766322211 1111
Q ss_pred eEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 779 RVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 779 ~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
....=-+.-+.+.++ ..+..+...++++||+
T Consensus 318 -~~s~s~I~pv~~gd~------~~a~~~s~~l~~~Gi~ 348 (388)
T COG0156 318 -LPSESPIIPVILGDE------ERALEASRALLEEGIY 348 (388)
T ss_pred -CCCCCCeeeeEeCCH------HHHHHHHHHHHHCCee
Confidence 001111223344443 5678888888888875
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=261.11 Aligned_cols=296 Identities=15% Similarity=0.045 Sum_probs=210.1
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCC----CCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~----~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E 475 (817)
+++||+| |++||++.||+|++|+.++++++++... ..+.++...+|+++|+++.+. +++++++||++||+
T Consensus 47 ~~~~~~s---~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~---~~~~~~~sG~~an~ 120 (407)
T PRK09064 47 EVTVWCS---NDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGK---EAALVFTSGYVSND 120 (407)
T ss_pred eEEEEEC---CCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCC---CcEEEECcHHHHHH
Confidence 8999999 9999999899999999999999875321 123578899999999999873 67899999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccc
Q 003472 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (817)
Q Consensus 476 ~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (817)
.|++++. .+. +..+|..+..+|++...++.+.+.+..
T Consensus 121 ~ai~~l~-~~~-------------------~~~~i~~~~~~h~s~~~~~~~~~~~~~----------------------- 157 (407)
T PRK09064 121 ATLSTLA-KLI-------------------PDCVIFSDELNHASMIEGIRRSRCEKH----------------------- 157 (407)
T ss_pred HHHHHHh-CCC-------------------CCCEEEEeCcchHHHHHHHHHcCCcEE-----------------------
Confidence 9999982 211 135777777778877666555432100
Q ss_pred cCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003472 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (817)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~ 635 (817)
. ++++|+ +.+++.++. ..++++.+|++|++ +++.|.
T Consensus 158 -----~----------------~~~~d~------------------~~le~~l~~----~~~~~~~~v~~~~v-~s~~G~ 193 (407)
T PRK09064 158 -----I----------------FRHNDV------------------AHLEELLAA----ADPDRPKLIAFESV-YSMDGD 193 (407)
T ss_pred -----E----------------ECCCCH------------------HHHHHHHHh----ccCCCCeEEEEeCC-CCCCcc
Confidence 0 013332 345566653 12246789999998 899998
Q ss_pred ccCCHHHHHHHHHHHhhcCCcEEEeeeee-c-cccccccchhhhcCC--CCcee--ecccccC--CCCCcceEEEechHH
Q 003472 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGC--VPDIA--CYGKLLT--GGVIPLAATLATNAV 707 (817)
Q Consensus 636 ~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-G-fGRtG~~~a~e~~gv--~PDiv--tlgK~Lg--gGy~PlsAvl~s~~i 707 (817)
+.+ +++|+++|++||++||+||+|+ | ||++|.++ .+++++ +||++ ||||++| ||| +++++++
T Consensus 194 ~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~-~~~~~~~~~~div~~t~sKa~g~~GG~-----~~~~~~~ 263 (407)
T PRK09064 194 IAP----IAEICDLADKYNALTYLDEVHAVGMYGPRGGGI-AERDGLMDRIDIIEGTLAKAFGVMGGY-----IAGSAAL 263 (407)
T ss_pred ccC----HHHHHHHHHHcCCEEEEECCCcccccCCCCCCh-HHhcCCCCCCeEEEEecchhhhccCce-----EecCHHH
Confidence 887 9999999999999999999997 7 58998865 567776 58988 9999998 665 7889999
Q ss_pred HhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEE
Q 003472 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLC 787 (817)
Q Consensus 708 ~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~ 787 (817)
++.+..... .+.+|++.+|+++++++++|+++++.+ ...++....++++.+.+.+. .++.+. ..+.++
T Consensus 264 ~~~l~~~~~----~~~~t~~~~~~~~~aa~~al~~~~~~~---~~~~~~~~~~~~l~~~L~~~--g~~~~~---~~~~iv 331 (407)
T PRK09064 264 VDAVRSYAP----GFIFTTSLPPAIAAAALASIRHLKESN---EERERHQERAAKLKAALDAA--GIPVMP---NESHIV 331 (407)
T ss_pred HHHHHHhCc----cccccCcCCHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHc--CCCCCC---CCCCEE
Confidence 887753211 234577899999999999999997632 22334444555554444331 233332 235566
Q ss_pred EEEEecCCCCCCcchHHHHHHHHHH-cCCC
Q 003472 788 AIELQAAGCNAGYCLIELFLYNFLT-TGMH 816 (817)
Q Consensus 788 gIel~~~~~~~~~~~~~~~~~~~l~-~Gv~ 816 (817)
.+.+.+. .....+...+++ +||+
T Consensus 332 ~i~~~~~------~~~~~l~~~L~~~~gi~ 355 (407)
T PRK09064 332 PVMVGDP------EKCKKASDMLLEEHGIY 355 (407)
T ss_pred EEEeCCH------HHHHHHHHHHHHhCCEE
Confidence 6666332 234556666665 4764
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=259.30 Aligned_cols=308 Identities=14% Similarity=0.117 Sum_probs=208.9
Q ss_pred eeccccccccCCCCCCCHHHHHHHHHHHHhccccCCC----CCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHH
Q 003472 402 FDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP----ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477 (817)
Q Consensus 402 lD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~----~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~A 477 (817)
|||.| |++||.++||++++++.+++++++..+.. ...+....+|+++|+++.+. +.+++++||+.|+.++
T Consensus 1 ~~f~s---~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~---e~al~~~sG~~a~~~~ 74 (392)
T PLN03227 1 LNFAT---HDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGT---ESAILYSDGASTTSST 74 (392)
T ss_pred CCCcC---cCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCC---CcEEEecCcHHHHHHH
Confidence 57777 89999988999999999999987743211 12356788999999999984 6899999999999987
Q ss_pred HHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccC
Q 003472 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (817)
Q Consensus 478 lklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (817)
+.... ++.+.|..+...|+++..++.+++...
T Consensus 75 i~~l~----------------------~~GD~Vl~~~~~h~s~~~~~~l~~~~~-------------------------- 106 (392)
T PLN03227 75 VAAFA----------------------KRGDLLVVDRGVNEALLVGVSLSRANV-------------------------- 106 (392)
T ss_pred HHHhC----------------------CCCCEEEEeccccHHHHHHHHHcCCeE--------------------------
Confidence 77651 123556667777777766554432100
Q ss_pred cceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC---CCCCCcEEEEEEccccccCCC
Q 003472 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG---LKVSGCIGALIIEPVVHAAGG 634 (817)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~---~~~~~~iAAvIvEPV~qg~gG 634 (817)
.. +.|+|.+ +. +.+.+.+..... .....+...|++||+ ++++|
T Consensus 107 ----~~--------------~~~~d~~----------~l-----~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v-~~~~G 152 (392)
T PLN03227 107 ----RW--------------FRHNDMK----------DL-----RRVLEQVRAQDVALKRKPTDQRRFLVVEGL-YKNTG 152 (392)
T ss_pred ----EE--------------eCCCCHH----------HH-----HHHHHHhhhhccccccccCCCcEEEEEcCC-cCCCC
Confidence 00 1134321 00 111112211000 001234679999998 99999
Q ss_pred cccCCHHHHHHHHHHHhhcCCcEEEeeeee--ccccccccchhhhcCCCC----ceeecccccCCCCCcc-eEEEechHH
Q 003472 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFT--GFWRLGVETTADLLGCVP----DIACYGKLLTGGVIPL-AATLATNAV 707 (817)
Q Consensus 635 ~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T--GfGRtG~~~a~e~~gv~P----DivtlgK~LggGy~Pl-sAvl~s~~i 707 (817)
.+++ +++++++|++||++||+||+|+ ++|++|. |+++++|++| ||+++|++ .|+.|+ |++++++++
T Consensus 153 ~i~~----l~~i~~l~~~~g~~livDe~~~~g~~g~~G~-g~~~~~g~~p~~~~Div~~sls--k~~g~~gg~v~~~~~~ 225 (392)
T PLN03227 153 TLAP----LKELVALKEEFHYRLILDESFSFGTLGKSGR-GSLEHAGLKPMVHAEIVTFSLE--NAFGSVGGMTVGSEEV 225 (392)
T ss_pred cccC----HHHHHHHHHHcCCEEEEECcccccccCCCCC-cHHHHcCCCCCCCceEEEeech--hhhhccCcEEecCHHH
Confidence 9988 9999999999999999999997 3455555 6899999999 99987733 332244 556789998
Q ss_pred HhhhcCCCccceeecccCCCCC--HHHHHHHHHHHHH-hcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEee-
Q 003472 708 FDSFVGDSKLKALLHGHSYSAH--ALGCAAAAKSIKW-FKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL- 783 (817)
Q Consensus 708 ~d~~~~~~~~~~~~h~~T~~gn--Pla~AAAlA~L~~-l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~- 783 (817)
++.+.. +.+++||+++ |+.|+|++++++. ++++++.+++.++++++.+ ++.+ ..+|.|.+|||.
T Consensus 226 ~~~~~~------~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~----~L~~--~~~~~~~~~rg~~ 293 (392)
T PLN03227 226 VDHQRL------SGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYS----TLTN--SSHPYALKLRNRL 293 (392)
T ss_pred HHHHHH------hCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHh--cCCcccccccccc
Confidence 887642 2477899987 8888888877755 4554555555555555544 4443 467889999994
Q ss_pred -------eeEEEEEEecCCCCCCc---chHHHHHHHHHHcCCC
Q 003472 784 -------GTLCAIELQAAGCNAGY---CLIELFLYNFLTTGMH 816 (817)
Q Consensus 784 -------Glm~gIel~~~~~~~~~---~~~~~~~~~~l~~Gv~ 816 (817)
|.|++|++.+....... .....+...++++|++
T Consensus 294 ~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~ 336 (392)
T PLN03227 294 VITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVA 336 (392)
T ss_pred ccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCE
Confidence 44799999653211100 1345788899999974
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=260.61 Aligned_cols=301 Identities=11% Similarity=0.032 Sum_probs=225.3
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC----CCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E 475 (817)
++|||+| |++||.++||+|++|+.+++++|+... ..++.+..+.+|+++|+++++ .+.+++++||+.||.
T Consensus 103 ~~l~FsS---ndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g---~e~all~sSGy~AN~ 176 (476)
T PLN02955 103 KLLLFSG---NDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKK---KEDCLVCPTGFAANM 176 (476)
T ss_pred eEEEeec---cCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHC---CCcEEEECChHHHHH
Confidence 8999999 999999889999999999999998643 334567889999999999998 478999999999999
Q ss_pred HHHHHHHHHhhc---cccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCc
Q 003472 476 IALKMAFRKFSF---DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (817)
Q Consensus 476 ~AlklA~r~~t~---~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (817)
+++.... .... ..+. ...++..+|..+...|.+...++.++... ..
T Consensus 177 ~~i~aL~-~~~~~~~~~~~----------~~~~~~d~i~~D~~~HaSI~dG~~ls~~~---~~----------------- 225 (476)
T PLN02955 177 AAMVAIG-SVASLLAASGK----------PLKNEKVAIFSDALNHASIIDGVRLAERQ---GN----------------- 225 (476)
T ss_pred HHHHHHh-hcccccccccc----------ccCCCCcEEEEeccchHHHHHHHHhcccc---CC-----------------
Confidence 9998751 0000 0000 01245678999999999999988876321 00
Q ss_pred ccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003472 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (817)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~ 632 (817)
...+. +.|||+ +.|++.|++. .++.+.||+|+| .++
T Consensus 226 ------a~~~~--------------f~HND~------------------~~Le~~L~~~-----~~~~~~Vv~EgV-~Sm 261 (476)
T PLN02955 226 ------VEVFV--------------YRHCDM------------------YHLNSLLSSC-----KMKRKVVVTDSL-FSM 261 (476)
T ss_pred ------ceEEE--------------eCCCCH------------------HHHHHHHHhC-----CCCceEEEEeCC-CCC
Confidence 00000 137876 5677777642 345578999998 899
Q ss_pred CCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc--cchhhhcCCCCce----eecccccC--CCCCcceEEEec
Q 003472 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVPDI----ACYGKLLT--GGVIPLAATLAT 704 (817)
Q Consensus 633 gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~--~~a~e~~gv~PDi----vtlgK~Lg--gGy~PlsAvl~s 704 (817)
.|.++| +++|+++|++||++||+||+| |+|+.|+ .+..+++|+.||+ .||||++| ||| ++++
T Consensus 262 dGdiap----L~eL~~L~~~~ga~LiVDEAH-~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~GGf-----i~gs 331 (476)
T PLN02955 262 DGDFAP----MEELSQLRKKYGFLLVIDDAH-GTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCHGGF-----IACS 331 (476)
T ss_pred CCCcCC----HHHHHHHHHHcCcEEEEcccc-cCceecCCCCcHHHHhCCCCCCcEEEEeCccchhccCce-----eecH
Confidence 999988 999999999999999999999 5778888 6778899998886 59999999 786 8999
Q ss_pred hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcC-cCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEee
Q 003472 705 NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL 783 (817)
Q Consensus 705 ~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~-~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~ 783 (817)
+++++.+....+ .+.+|.+..|..+++++++++++++ +..+++++++++++.+. ...+. .
T Consensus 332 ~~~~~~l~~~~~----~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~---------~G~~~------~ 392 (476)
T PLN02955 332 KKWKQLIQSRGR----SFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKAL---------SGVDI------S 392 (476)
T ss_pred HHHHHHHHHhCC----CCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh---------cCCCC------C
Confidence 999998875432 2344446778888899999999965 34556677766665431 12221 1
Q ss_pred eeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 784 GTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 784 Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.-++.|.+.++ .....+.+.++++||+
T Consensus 393 sPI~pI~ig~~------~~a~~~~~~L~~~Gi~ 419 (476)
T PLN02955 393 SPIISLVVGNQ------EKALKASRYLLKSGFH 419 (476)
T ss_pred CCEEEEEeCCH------HHHHHHHHHHHHCCCE
Confidence 34556666554 5677788999999986
|
|
| >PRK00784 cobyric acid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=264.65 Aligned_cols=200 Identities=17% Similarity=0.083 Sum_probs=153.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCC--------CCCcHHHHHHhCCCCccccCCCc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYP--------HDSDSRFLFTKLPSLSLRRNFPS 108 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~--------~~~d~~~~~~~~~~~~~~~~~~~ 108 (817)
|++|||+||+|+||||+||++|+++|+ ++|++|++||||++... +.+|++++++.+.++
T Consensus 2 ~~~ifItGT~T~vGKT~vt~~L~~~l~-----~~G~~v~~~Kpv~~~~~~~~~~dg~~~~Da~~l~~~~~~~-------- 68 (488)
T PRK00784 2 AKALMVQGTASDAGKSTLVAGLCRILA-----RRGYRVAPFKAQNMSLNSAVTADGGEIGRAQALQAEAAGV-------- 68 (488)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCeEecccchhccccceECCCCCeeHHHHHHHHHhCCC--------
Confidence 789999999999999999999999994 88999999999863211 123666665544222
Q ss_pred ccccccchhhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHh-Hh
Q 003472 109 SLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAE-RE 187 (817)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~-~~ 187 (817)
.++ ..+||+.++ |.+|+.++. .+
T Consensus 69 ------------------------~~~-------------------------------~~i~P~~~~-~~sp~~a~~~~~ 92 (488)
T PRK00784 69 ------------------------EPS-------------------------------VDMNPVLLK-PQSDRGSQVIVQ 92 (488)
T ss_pred ------------------------Cch-------------------------------hccCCEEec-CCCCCcceEEEc
Confidence 111 237788775 788886652 11
Q ss_pred -------------cCCCCChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCC-CCCC-CCCchhhHhhhCCCC
Q 003472 188 -------------SGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVA-SPGP-SGSLQCDLYRPFRLP 252 (817)
Q Consensus 188 -------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~-~p~~-~~~~~~~la~~l~~p 252 (817)
.+..+..++|++.++++.++ +|++||||+||++ .|+. .+.+++|||+.+++|
T Consensus 93 g~~~~~l~a~~~~~~~~~~~~~I~~~~~~l~~~-------------~D~vIVEGaGg~~~~~L~~~~~~~~dlak~l~~P 159 (488)
T PRK00784 93 GKPVGNMDARDYHDYKPRLLEAVLESLDRLAAE-------------YDVVVVEGAGSPAEINLRDRDIANMGFAEAADAP 159 (488)
T ss_pred CccccccCHHHHhhcchhhHHHHHHHHHHHHhc-------------CCEEEEECCCCccccCcccCCchhHHHHHHcCCC
Confidence 03456788899988876654 9999999999999 5654 357899999999999
Q ss_pred EEEEEcCCCC-hHHHHHHHHHHHHhC-CCcEEEEEEccCCCC------CHHHHHHhhcCCCcEEe-cCCCCCCCcch
Q 003472 253 GILVGDGRLG-GISGTISAYESLKLR-GYDVVAVVFEDHGLV------NEVPLMSYLRNRVPVLV-LPPLPQDSSND 320 (817)
Q Consensus 253 vilV~~~~~g-~i~~~~~~~~~l~~~-~~~v~gvi~n~~~~~------~~~~l~~~~~~~~pvlg-iP~~~~~~~~~ 320 (817)
||||++.++| ++++++.+++.+..+ +.+|+|||+|++..+ +.++|++++ ++||+| ||+.+.+..+.
T Consensus 160 VILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~~~~~~~~~~~~~l~~~~--gipvLG~iP~~~~L~~~~ 234 (488)
T PRK00784 160 VILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFRGDISLLEPGLDWLEELT--GVPVLGVLPYLDDLRLPA 234 (488)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCCCCHHHHHHHHHHHHHhc--CCCEEEEcCCCcCCCcCh
Confidence 9999999998 588888888888754 479999999998532 233355566 999999 99999887554
|
|
| >TIGR00313 cobQ cobyric acid synthase CobQ | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-24 Score=244.48 Aligned_cols=194 Identities=16% Similarity=0.071 Sum_probs=141.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCC--------CCCcHHHHHHhCCCCccccCCCcccc
Q 003472 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYP--------HDSDSRFLFTKLPSLSLRRNFPSSLI 111 (817)
Q Consensus 40 ~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~--------~~~d~~~~~~~~~~~~~~~~~~~~~~ 111 (817)
|||+||+|+||||+||++||+.|+ ++|++|+||||+++... +.+++++++..++++
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~-----~~G~~v~~fKp~~~~~~s~~~~~~~e~~~a~~~qa~a~~~----------- 64 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILA-----RRGYRVAPFKSQNMSLNSFVTKEGGEIAIAQATQALAAGI----------- 64 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHH-----hCCCeEEEECCcccccCccccCCCchhHHHHHHHHHhCCC-----------
Confidence 699999999999999999999994 89999999999963211 112344444433221
Q ss_pred cccchhhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeecc-------------cc
Q 003472 112 LSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEE-------------AV 178 (817)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 178 (817)
.|.+ .+||+.|+. |.
T Consensus 65 ---------------------~~~~-------------------------------~~nPv~lk~~~~~~s~~i~~g~~~ 92 (475)
T TIGR00313 65 ---------------------EPSV-------------------------------HMNPILLKPKGNFTSQVIVHGRAV 92 (475)
T ss_pred ---------------------Cchh-------------------------------ccCCEEeCcCCCCcCcEEEcCccc
Confidence 2222 255555554 34
Q ss_pred ChHHHHhHhc-CCCCChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCC--CCCCCCchhhHhhhCCCCEEE
Q 003472 179 SPHLAAERES-GGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVAS--PGPSGSLQCDLYRPFRLPGIL 255 (817)
Q Consensus 179 ~p~~a~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~--p~~~~~~~~~la~~l~~pvil 255 (817)
+|+.+.+... +..+..++|.+.+.++.++ +|++|||||||+++ +...+.+++++|+.+++||||
T Consensus 93 ~~~~a~~~~~~~~~~~~~~i~~~~~~l~~~-------------~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~apVIL 159 (475)
T TIGR00313 93 GDMNYQEYYKNKVDFFLKAIKESLEILARE-------------YDYVVIEGAGSPAEINLLKRDLANMRIAELANADAIL 159 (475)
T ss_pred CcCCHHHHhhhhhHHHHHHHHHHHHHHHhc-------------CCEEEEECCCCccccccCcCCchHHHHHHHhCCCEEE
Confidence 5555533321 3345678888888877654 99999999999987 244678999999999999999
Q ss_pred EEcCCCCh-HHHHHHHHHHHHhC-CCcEEEEEEccCCC------CCHHHHHHhhcCCCcEEe-cCCCCCC
Q 003472 256 VGDGRLGG-ISGTISAYESLKLR-GYDVVAVVFEDHGL------VNEVPLMSYLRNRVPVLV-LPPLPQD 316 (817)
Q Consensus 256 V~~~~~g~-i~~~~~~~~~l~~~-~~~v~gvi~n~~~~------~~~~~l~~~~~~~~pvlg-iP~~~~~ 316 (817)
|++.++|+ +++++.+++.+... +..++|||+|++.. ++.++|++++ ++|||| +|+.+.+
T Consensus 160 V~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~~~~~~~~~~l~e~~--gipvLG~ip~~~~l 227 (475)
T TIGR00313 160 VADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFRGNVDVLKSGIEKLEELT--GIPVLGVLPYDENL 227 (475)
T ss_pred EEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccCCcHHHHHHHHHHHHHhh--CCCEEEEecCCCcC
Confidence 99999885 56777788887754 36899999999843 2344456666 999999 9998876
|
|
| >TIGR00347 bioD dethiobiotin synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=206.51 Aligned_cols=165 Identities=28% Similarity=0.397 Sum_probs=140.5
Q ss_pred EEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCC-CCCcHHHHHHhCCCCccccCCCcccccccchhhh
Q 003472 41 QIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYP-HDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFS 119 (817)
Q Consensus 41 ~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (817)
||+||++|+|||+++++|+++|. ++|+||++|||++++.. .+.|..++++.. +.
T Consensus 1 fI~~t~~~~GKT~va~~L~~~l~-----~~g~~V~~~kP~~~~~~~~d~d~~~i~~~~-~~------------------- 55 (166)
T TIGR00347 1 FVTGTDTGVGKTVASSALAAKLK-----KAGYSVGYYKPVQTGIEKTNSDALLLQNIS-GT------------------- 55 (166)
T ss_pred CeecCCCCccHHHHHHHHHHHHH-----HCCCcEEEEEeeeeCCCCCchHHHHHHHHc-CC-------------------
Confidence 79999999999999999999994 88999999999999864 245667666554 11
Q ss_pred hHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHhHhcCCCCChHHHHH
Q 003472 120 SLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIE 199 (817)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~i~~ 199 (817)
..++ ...+++.+..|.+|+.++..+ +.....+++.+
T Consensus 56 ------------~~~~-------------------------------~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~i~~ 91 (166)
T TIGR00347 56 ------------ALDW-------------------------------DEVNPYAFALPLSPHIAADQE-GRPIDLEELSK 91 (166)
T ss_pred ------------CCch-------------------------------hccCCeeeCCCCChHHHHHHh-CCCCCHHHHHH
Confidence 1111 124578888899999887776 66678888999
Q ss_pred HHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCC
Q 003472 200 TLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGY 279 (817)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~ 279 (817)
.++++.++ +|++||||+||+.+|+....+++|+++.+++|||||++.+.++++++..+.+.++.++.
T Consensus 92 ~~~~l~~~-------------~D~viid~~g~~~~~~~~~~~~~dl~~~~~~~vilV~~~~~~~~~~~~~~~~~l~~~~~ 158 (166)
T TIGR00347 92 HLRTLEQK-------------YDFVLVEGAGGLCVPITEEYTTADLIKLLQLPVILVVRVKLGTINHTLLTVEHARQTGL 158 (166)
T ss_pred HHHHHHhc-------------CCEEEEEcCCccccCCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHHHCCC
Confidence 88876644 99999999999999988778999999999999999999999999999999999999999
Q ss_pred cEEEEEEc
Q 003472 280 DVVAVVFE 287 (817)
Q Consensus 280 ~v~gvi~n 287 (817)
++.|+|+|
T Consensus 159 ~i~gvv~N 166 (166)
T TIGR00347 159 TLAGVILN 166 (166)
T ss_pred CeEEEEeC
Confidence 99999998
|
Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor. |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=228.06 Aligned_cols=303 Identities=10% Similarity=0.029 Sum_probs=199.9
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhcccc---C-CCCCCChHHHHHHH
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV---M-FPENVYEPALECAE 450 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~---~-~~~~~~~~~~eLae 450 (817)
.+++..++.|. +++|-+|+ .|||+.. ||+|++|+.+|+++++.. + ......+...+|++
T Consensus 44 ~~~~~~~~~g~--~~~~~~~~----~YL~l~~-----------~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~ 106 (407)
T PRK07179 44 KHLVLGKTPGP--DAIILQSN----DYLNLSG-----------HPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEK 106 (407)
T ss_pred ceEEeecCCCC--cEEEeecC----CccCCCC-----------CHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHH
Confidence 45666666665 47777888 8888763 999999999999987422 1 11122367889999
Q ss_pred HHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCC
Q 003472 451 LLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS 530 (817)
Q Consensus 451 ~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~ 530 (817)
+|+++++. ++++|++||++||+.|++... . + .+.+..+.-.|-+...++...+..
T Consensus 107 ~la~~~g~---~~~~~~~sG~~An~~~l~~l~-----~---------------~--g~~v~~~~~~h~s~~~~~~~~g~~ 161 (407)
T PRK07179 107 KLAAFTGF---ESCLLCQSGWAANVGLLQTIA-----D---------------P--NTPVYIDFFAHMSLWEGVRAAGAQ 161 (407)
T ss_pred HHHHHhCC---CcEEEECCHHHHHHHHHHHhC-----C---------------C--CCEEEEECCcCHHHHHHHHHCCCe
Confidence 99999883 678999999999999999771 0 1 123334555555443322221110
Q ss_pred CCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhc
Q 003472 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610 (817)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~ 610 (817)
.+++ .++|. +.+++.+++
T Consensus 162 ------------------------------~~~~--------------~~~d~------------------~~l~~~l~~ 179 (407)
T PRK07179 162 ------------------------------AHPF--------------RHNDV------------------DHLRRQIER 179 (407)
T ss_pred ------------------------------EEEe--------------cCCCH------------------HHHHHHHHh
Confidence 0010 12332 456666652
Q ss_pred CCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeec--cccccccchhhhcCCCC--ceee
Q 003472 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG--FWRLGVETTADLLGCVP--DIAC 686 (817)
Q Consensus 611 ~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TG--fGRtG~~~a~e~~gv~P--Divt 686 (817)
.+.++|++|++ +++.|.+.| +++|+++|++||++||+||+|+. +|++|..+ .+++|+.+ |+++
T Consensus 180 -------~~~~lV~v~~v-~n~tG~i~p----l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~~~~vdi~~ 246 (407)
T PRK07179 180 -------HGPGIIVVDSV-YSTTGTIAP----LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGL-VAELGLTSRVHFIT 246 (407)
T ss_pred -------cCCeEEEECCC-CCCCCcccc----HHHHHHHHHHcCCEEEEECcccccCcCCCCCch-HHhcCCCCCCCEEE
Confidence 23578999998 999999987 89999999999999999999973 34555543 45678754 8864
Q ss_pred --cccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHH
Q 003472 687 --YGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWD 764 (817)
Q Consensus 687 --lgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~ 764 (817)
++|++|+ ++|++++++++++.+.... .+..+++|+. |..++++.++++.+++. +...++.+.+++++.
T Consensus 247 ~S~sK~~g~---~~G~l~~~~~~~~~~~~~~--~~~~~~~t~~--~~~~aa~~aal~~~~~~---~~~~~~l~~~~~~l~ 316 (407)
T PRK07179 247 ASLAKAFAG---RAGIITCPRELAEYVPFVS--YPAIFSSTLL--PHEIAGLEATLEVIESA---DDRRARLHANARFLR 316 (407)
T ss_pred eechHhhhc---cCeEEEeCHHHHHHHHHhC--cCeeeCCCCC--HHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHH
Confidence 7999975 4789999999888774321 1223444444 66667778889988653 223344444555444
Q ss_pred HHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 765 LELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 765 ~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.|.+. .. .+++.|.++.+++... .....+...+.++||+
T Consensus 317 ~~L~~~--g~----~v~~~~~i~~l~~~~~------~~~~~~~~~L~~~GI~ 356 (407)
T PRK07179 317 EGLSEL--GY----NIRSESQIIALETGSE------RNTEVLRDALEERNVF 356 (407)
T ss_pred HHHHHc--CC----CCCCCCCEEEEEeCCH------HHHHHHHHHHHHCCce
Confidence 444332 22 3557788999887432 2445677788899985
|
|
| >PRK06278 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-23 Score=233.69 Aligned_cols=184 Identities=13% Similarity=0.131 Sum_probs=139.0
Q ss_pred cCCCCCCCcCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhCCCCcccc
Q 003472 25 TFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRR 104 (817)
Q Consensus 25 ~~~~~~~~~~~~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~~~~~~~~ 104 (817)
..+-..-...-+|+.|||+||+||+|||+||++|+++|+ ++ |.+||| | ++..|.
T Consensus 226 ~~~~~~~~~~~~~~~i~Iagt~Tg~GKT~vt~~L~~al~-----~~---v~~fK~---G-pD~id~-------------- 279 (476)
T PRK06278 226 ISTNNKKEERNKPKGIILLATGSESGKTFLTTSIAGKLR-----GK---VFVAKI---G-PDVRDI-------------- 279 (476)
T ss_pred ccccccchhhcCCCeEEEEeCCCCCCHHHHHHHHHHHHH-----hC---eEEEcC---C-CChhhc--------------
Confidence 334455666777999999999999999999999999994 33 999995 3 322220
Q ss_pred CCCcccccccchhhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHH
Q 003472 105 NFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAA 184 (817)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~ 184 (817)
+.+.+.|+.|++|+.++
T Consensus 280 ---------------------------------------------------------------~p~~~~~~~~~sp~~a~ 296 (476)
T PRK06278 280 ---------------------------------------------------------------VPSLYLLREKMTKYNSI 296 (476)
T ss_pred ---------------------------------------------------------------CCcceecccccCChHHH
Confidence 02257899999999999
Q ss_pred hHhcCCCCChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCC---CchhhHhhhCCCCEEEEEcCCC
Q 003472 185 ERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSG---SLQCDLYRPFRLPGILVGDGRL 261 (817)
Q Consensus 185 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~---~~~~~la~~l~~pvilV~~~~~ 261 (817)
..+....+..++..+.++. ..+|++|||||||+++|...+ .+++|||+.+++|||||++.++
T Consensus 297 n~~~d~~~~~~~~~~~~~~---------------~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~~PVILV~~~~~ 361 (476)
T PRK06278 297 KIGDRGWSDVEEFLEFVKN---------------SDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALGFPVYIVSSCSK 361 (476)
T ss_pred hhcCCcccCHHHHHHHHHh---------------cCCCEEEEECCCCcccccCCCCccccHHHHHHHhCCCEEEEEcCCC
Confidence 9762223555555554321 138999999999999995433 5899999999999999999999
Q ss_pred ChHHHHHHHH----HHHHhCCCcEEEEEEccCCC-CCHHHHHHhhcC-CCcEEecCC
Q 003472 262 GGISGTISAY----ESLKLRGYDVVAVVFEDHGL-VNEVPLMSYLRN-RVPVLVLPP 312 (817)
Q Consensus 262 g~i~~~~~~~----~~l~~~~~~v~gvi~n~~~~-~~~~~l~~~~~~-~~pvlgiP~ 312 (817)
|++++++.++ ++++.++.+|.|||+|++.. ...+.+++.++. ++||||+|.
T Consensus 362 g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~~~~~~~~~~~le~~gvpVLG~~~ 418 (476)
T PRK06278 362 SGIEGAFVESMAYYSLLKKMGVKVEGIILNKVYNMEIFEKVKKIAENSNINLIGVGK 418 (476)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCcHHHHHHHHHHHHhcCCCEEEecc
Confidence 9999998854 56667789999999999943 333444444443 999999654
|
|
| >PRK13896 cobyrinic acid a,c-diamide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-22 Score=228.88 Aligned_cols=174 Identities=19% Similarity=0.232 Sum_probs=132.9
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhCCCCccccCCCcccccccch
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (817)
|+.|||+||+||+|||+||++|+++|+ ++|.+|.+||| | ++..|+.++.+.+ +.+
T Consensus 1 m~~~~i~~~~s~~GKT~vt~gl~~~l~-----~~g~~v~~~K~---G-pd~iD~~~~~~~~-g~~--------------- 55 (433)
T PRK13896 1 MKGFVLGGTSSGVGKTVATLATIRALE-----DAGYAVQPAKA---G-PDFIDPSHHEAVA-GRP--------------- 55 (433)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHH-----HCCCeeEEEee---C-CCCCCHHHHHHHh-CCC---------------
Confidence 678999999999999999999999994 89999999996 4 5678888776654 431
Q ss_pred hhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHhHhcCCCCChHH
Q 003472 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSK 196 (817)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~ 196 (817)
+.|+..| .+ ..+.
T Consensus 56 ---------------------------------------------------~~nld~~-------~~---------~~~~ 68 (433)
T PRK13896 56 ---------------------------------------------------SRTLDPW-------LS---------GEDG 68 (433)
T ss_pred ---------------------------------------------------cccCChh-------hC---------CHHH
Confidence 1122122 11 1244
Q ss_pred HHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCCh--HHHHHHHHHHH
Q 003472 197 VIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGG--ISGTISAYESL 274 (817)
Q Consensus 197 i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~--i~~~~~~~~~l 274 (817)
|.+.+.+ ..+|++||||+||++++ ...+++|||+.+++|||||++.++|+ ++++++++..+
T Consensus 69 i~~~~~~---------------~~~d~~vIEG~gGl~dg--~~~s~adla~~l~~PviLVv~~~~g~~s~aa~l~g~~~~ 131 (433)
T PRK13896 69 MRRNYYR---------------GEGDICVVEGVMGLYDG--DVSSTAMVAEALDLPVVLVVDAKAGMESVAATALGFRAY 131 (433)
T ss_pred HHHHHHh---------------hcCCEEEEECCCccccC--CCCCHHHHHHHHCCCEEEEEcCcccHHHHHHHHHHHHHH
Confidence 5554431 12899999999999976 33789999999999999999999995 67778887544
Q ss_pred Hh---CCCcEEEEEEccCCC-CCHHHHHHhhcCCCcEEe-cCCCCCCCcc
Q 003472 275 KL---RGYDVVAVVFEDHGL-VNEVPLMSYLRNRVPVLV-LPPLPQDSSN 319 (817)
Q Consensus 275 ~~---~~~~v~gvi~n~~~~-~~~~~l~~~~~~~~pvlg-iP~~~~~~~~ 319 (817)
.. ++++|.|||+|++.. .+.+.+++.+++++||+| ||..+++.-+
T Consensus 132 ~~~~~~~~~i~GvIlN~~~~~~h~~~l~~~~~~~i~vlG~lP~~~~~~~~ 181 (433)
T PRK13896 132 ADRIGRDIDVAGVIAQRAHGGRHADGIRDALPDELTYFGRIPPRDDLEIP 181 (433)
T ss_pred HHhccCCCcEEEEEEECCCcHHHHHHHHHhhhhcCceeEecccCCCCCCC
Confidence 43 579999999999954 345666766655799999 9999887654
|
|
| >COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-22 Score=222.39 Aligned_cols=176 Identities=19% Similarity=0.242 Sum_probs=141.9
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhCCCCccccCCCcccccccchh
Q 003472 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSIL 117 (817)
Q Consensus 38 ~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (817)
+.|+|+||+||+||||||+||+++|+ ++|++|.+|| -+|+++|+.+..... |.
T Consensus 1 ~~vvIAg~~SG~GKTTvT~glm~aL~-----~rg~~VqpfK----vGPDYIDP~~H~~at-G~----------------- 53 (451)
T COG1797 1 PAVVIAGTSSGSGKTTVTLGLMRALR-----RRGLKVQPFK----VGPDYIDPGYHTAAT-GR----------------- 53 (451)
T ss_pred CceEEecCCCCCcHHHHHHHHHHHHH-----hcCCcccccc----cCCCccCchhhhHhh-CC-----------------
Confidence 47999999999999999999999994 9999999999 357889988777664 44
Q ss_pred hhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHhHhcCCCCChHHH
Q 003472 118 FSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKV 197 (817)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~i 197 (817)
.|.|++.| .+..+.|
T Consensus 54 -------------------------------------------------~srNLD~~----------------mm~~~~v 68 (451)
T COG1797 54 -------------------------------------------------PSRNLDSW----------------MMGEEGV 68 (451)
T ss_pred -------------------------------------------------ccCCCchh----------------hcCHHHH
Confidence 45667777 2456888
Q ss_pred HHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCC---CCCchhhHhhhCCCCEEEEEcCCCCh--HHHHHHHHH
Q 003472 198 IETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGP---SGSLQCDLYRPFRLPGILVGDGRLGG--ISGTISAYE 272 (817)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~---~~~~~~~la~~l~~pvilV~~~~~g~--i~~~~~~~~ 272 (817)
++.+.+..++ .|+.||||++|++++.. ...+.++|||.|++|||||+|++..+ +.+++..+.
T Consensus 69 ~~~f~~~~~~-------------adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~S~AAiv~G~~ 135 (451)
T COG1797 69 RALFARAAAD-------------ADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSRSVAAIVKGFK 135 (451)
T ss_pred HHHHHHhcCC-------------CCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcchhHHHHHHHHHHH
Confidence 8888887765 89999999999999833 34799999999999999999988544 445555555
Q ss_pred HHHhCCCcEEEEEEccC-CCCCHHHHHHhhcC--CCcEEe-cCCCCCCCcc
Q 003472 273 SLKLRGYDVVAVVFEDH-GLVNEVPLMSYLRN--RVPVLV-LPPLPQDSSN 319 (817)
Q Consensus 273 ~l~~~~~~v~gvi~n~~-~~~~~~~l~~~~~~--~~pvlg-iP~~~~~~~~ 319 (817)
.+. .++++.|||+|++ .+.+.+.+++.++. ++|||| ||..+++.-+
T Consensus 136 ~fd-p~v~iaGVIlNrVgserH~~llr~Ale~~~gv~vlG~lpr~~~l~lp 185 (451)
T COG1797 136 HFD-PDVNIAGVILNRVGSERHYELLRDALEEYTGVPVLGYLPRDDDLELP 185 (451)
T ss_pred hcC-CCCceEEEEEecCCCHHHHHHHHHHhhhcCCCcEEEEecCCcccCCc
Confidence 554 3488999999999 45666666665553 799999 9999988865
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-21 Score=216.32 Aligned_cols=312 Identities=14% Similarity=0.085 Sum_probs=209.6
Q ss_pred eEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC----CCCCCChHHHHHHHH
Q 003472 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAEL 451 (817)
Q Consensus 376 p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~ 451 (817)
..++++++|.+ +++ +|+ +|||+.++ .++||..+|+|++|+++++.+++... ...+..+...+++++
T Consensus 23 ~~~~~~~~g~~--~~~-~g~----~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 92 (385)
T PRK05958 23 LRPREGGAGRW--LVV-DGR----RMLNFASN---DYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEE 92 (385)
T ss_pred ccccccCCCce--eEe-CCc----eEEEeeCC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHH
Confidence 34778888875 776 999 99999985 46898328999999999998865321 112346778899999
Q ss_pred HHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCC
Q 003472 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (817)
Q Consensus 452 L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~ 531 (817)
++++++. +.++++++|++++..+++.. + ++.+.|.+...+|+.+..++.+.+...
T Consensus 93 la~~~~~---~~~i~~~~g~~~~~~~l~~~----~------------------~~gd~V~~~~~~~~~~~~~~~~~g~~~ 147 (385)
T PRK05958 93 LAEWFGA---ERALLFSSGYAANLAVLTAL----A------------------GKGDLIVSDKLNHASLIDGARLSRARV 147 (385)
T ss_pred HHHHhCC---CcEEEECcHHHHHHHHHHHh----C------------------CCCCEEEEeCccCHHHHHHHHhcCCce
Confidence 9998873 57888899999999887654 1 123456677788987776655543210
Q ss_pred CCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcC
Q 003472 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (817)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (817)
..+ | .+|. +.+++.++.
T Consensus 148 ----------------------------~~~--~--------------~~d~------------------~~l~~~i~~- 164 (385)
T PRK05958 148 ----------------------------RRY--P--------------HNDV------------------DALEALLAK- 164 (385)
T ss_pred ----------------------------EEe--C--------------CCCH------------------HHHHHHHHh-
Confidence 001 1 1121 345666652
Q ss_pred CCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee-c-cccccccchhhhcC--CCCc---e
Q 003472 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLG--CVPD---I 684 (817)
Q Consensus 612 ~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-G-fGRtG~~~a~e~~g--v~PD---i 684 (817)
...+.++++++++ +...|...+ +++|.++|++||+++|+||+|+ | +|++|..+ ...++ ..+| +
T Consensus 165 ----~~~~~~lvi~~~~-~~~~G~~~~----l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~-~~~~~~~~~~~~i~~ 234 (385)
T PRK05958 165 ----WRAGRALIVTESV-FSMDGDLAP----LAELVALARRHGAWLLVDEAHGTGVLGPQGRGL-AAEAGLAGEPDVILV 234 (385)
T ss_pred ----ccCCCeEEEEEec-ccCCCCcCC----HHHHHHHHHHhCCEEEEECcccccccCCCCCch-HHhhCCCCCCceEEE
Confidence 1234788999997 888887665 9999999999999999999994 3 45555543 22333 3567 5
Q ss_pred eecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHH
Q 003472 685 ACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWD 764 (817)
Q Consensus 685 vtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~ 764 (817)
.+++|++|. +.|++++++++++.+..... .+.++++.+|++++++.++|+.+++. +++.++....++++.
T Consensus 235 ~s~sK~~~~---~Gg~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~aa~~aal~~~~~~---~~~~~~~~~~~~~l~ 304 (385)
T PRK05958 235 GTLGKALGS---SGAAVLGSETLIDYLINRAR----PFIFTTALPPAQAAAARAALRILRRE---PERRERLAALIARLR 304 (385)
T ss_pred Eechhhccc---CCcEEEcCHHHHHHHHHhCc----cceecCCCCHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHH
Confidence 589999974 23668889888887643211 23456678999999999999998663 233344444444444
Q ss_pred HHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 765 LELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 765 ~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+.+ .+ +.-+...|.++.+.+.+. .....+.+.++++||.
T Consensus 305 ~~L~~----~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~gI~ 345 (385)
T PRK05958 305 AGLRA----LG-FQLMDSQSAIQPLIVGDN------ERALALAAALQEQGFW 345 (385)
T ss_pred HHHHH----cC-CCcCCCCCCEEEEEeCCH------HHHHHHHHHHHHCCce
Confidence 33332 22 111345677888877432 2445688888888874
|
|
| >PRK01077 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.2e-22 Score=227.02 Aligned_cols=178 Identities=19% Similarity=0.267 Sum_probs=133.9
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhCCCCccccCCCcccccccc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNS 115 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (817)
+|+.|||+||+||||||+||++|+++|+ ++|++|.+||| | ++..|+.++.... +.+
T Consensus 2 ~m~~i~I~gt~s~~GKT~it~~L~~~L~-----~~G~~V~~fK~---G-pd~~d~~~~~~~~-g~~-------------- 57 (451)
T PRK01077 2 RMPALVIAAPASGSGKTTVTLGLMRALR-----RRGLRVQPFKV---G-PDYIDPAYHTAAT-GRP-------------- 57 (451)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH-----hCCCCcceeec---C-CCcccHHHHHHHh-CCC--------------
Confidence 4789999999999999999999999994 88999999998 3 4556766665443 320
Q ss_pred hhhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHhHhcCCCCChH
Q 003472 116 ILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDS 195 (817)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~ 195 (817)
+.+...| ....+
T Consensus 58 ----------------------------------------------------~~~ld~~----------------~~~~~ 69 (451)
T PRK01077 58 ----------------------------------------------------SRNLDSW----------------MMGEE 69 (451)
T ss_pred ----------------------------------------------------cccCCce----------------eCCHH
Confidence 0111111 12356
Q ss_pred HHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCC---CCCCchhhHhhhCCCCEEEEEcCCCCh--HHHHHHH
Q 003472 196 KVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPG---PSGSLQCDLYRPFRLPGILVGDGRLGG--ISGTISA 270 (817)
Q Consensus 196 ~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~---~~~~~~~~la~~l~~pvilV~~~~~g~--i~~~~~~ 270 (817)
.|.+.+.++.++ +|++||||+||++++. ....+++|+|+.+++|||||++.+..+ +++++.+
T Consensus 70 ~v~~~~~~~~~~-------------~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~~~~~~~a~l~~~ 136 (451)
T PRK01077 70 LVRALFARAAQG-------------ADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDASGMAQSAAALVLG 136 (451)
T ss_pred HHHHHHHHhccc-------------CCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCchHHHHHHHHHHH
Confidence 788888776544 9999999999999863 346789999999999999999988643 5566666
Q ss_pred HHHHHhCCCcEEEEEEccCCCC-CHHHHHHhhcC-CCcEEe-cCCCCCCCcc
Q 003472 271 YESLKLRGYDVVAVVFEDHGLV-NEVPLMSYLRN-RVPVLV-LPPLPQDSSN 319 (817)
Q Consensus 271 ~~~l~~~~~~v~gvi~n~~~~~-~~~~l~~~~~~-~~pvlg-iP~~~~~~~~ 319 (817)
+..+ .++++++|||+|++..+ ..+.+.+.++. ++||+| ||+.+.+..+
T Consensus 137 ~~~~-~~~i~i~GvI~N~v~~~~~~~~l~~~l~~~gipvLG~IP~~~~l~~p 187 (451)
T PRK01077 137 FATF-DPDVRIAGVILNRVGSERHYQLLREALERCGIPVLGALPRDAALALP 187 (451)
T ss_pred HHHh-CCCCCEEEEEEECCCChhHHHHHHHHHHhcCCCEEEEeeCCcccCCC
Confidence 6666 34789999999999432 33344444433 899999 9999987644
|
|
| >TIGR00379 cobB cobyrinic acid a,c-diamide synthase | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-22 Score=227.61 Aligned_cols=172 Identities=16% Similarity=0.214 Sum_probs=130.0
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhCCCCccccCCCcccccccchhh
Q 003472 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILF 118 (817)
Q Consensus 39 ~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (817)
+|||+||+||||||+||++|+++|+ ++|++|.+||| | ++..|+.++...+ +.+
T Consensus 1 ~~~I~gT~t~vGKT~vt~~L~~~L~-----~~G~~V~~fK~---g-~d~~D~~~~~~~~-g~~----------------- 53 (449)
T TIGR00379 1 RVVIAGTSSGVGKTTISTGIMKALS-----RRKLRVQPFKV---G-PDYIDPMFHTQAT-GRP----------------- 53 (449)
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCceeEEcc---C-CCCCCHHHHHHHh-CCc-----------------
Confidence 4899999999999999999999994 88999999998 3 4456767655543 320
Q ss_pred hhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHhHhcCCCCChHHHH
Q 003472 119 SSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVI 198 (817)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~i~ 198 (817)
+.++..| .++.+.|.
T Consensus 54 -------------------------------------------------~~~ld~~----------------~~~~~~i~ 68 (449)
T TIGR00379 54 -------------------------------------------------SRNLDSF----------------FMSEAQIQ 68 (449)
T ss_pred -------------------------------------------------hhhCCcc----------------cCCHHHHH
Confidence 0111111 13467888
Q ss_pred HHHHHHHhccCcccccccccCCCCEEEEeCCCCCC---CCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHH--
Q 003472 199 ETLGKCLRDGLESESESERGKMEILCIVETAGGVA---SPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES-- 273 (817)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~---~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~-- 273 (817)
+.+.++.++ +|++||||+||++ +|+....+++|||+.+++|||||++.+ ++++++.++..
T Consensus 69 ~~~~~~~~~-------------~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~--~~~~t~~al~~~~ 133 (449)
T TIGR00379 69 ECFHRHSKG-------------TDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ--RLSRSAAAIVLGY 133 (449)
T ss_pred HHHHHhccc-------------CCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc--hHHHHHHHHHHHH
Confidence 888877654 8999999999999 566667899999999999999999987 56666666431
Q ss_pred -HHhCCCcEEEEEEccCCCC-----CHHHHHHhhcCCCcEEe-cCCCCCCCcc
Q 003472 274 -LKLRGYDVVAVVFEDHGLV-----NEVPLMSYLRNRVPVLV-LPPLPQDSSN 319 (817)
Q Consensus 274 -l~~~~~~v~gvi~n~~~~~-----~~~~l~~~~~~~~pvlg-iP~~~~~~~~ 319 (817)
...++.+++|||+|++..+ +.+.+++++ ++||+| ||+.+++..+
T Consensus 134 ~~~~~~i~i~GvIlN~v~~~~~~~~~~~~i~~~~--gipvLG~IP~~~~l~~p 184 (449)
T TIGR00379 134 RSFDPGVKLKGVILNRVGSERHLEKLKIAVEPLR--GIPILGVIPRQQDLKVP 184 (449)
T ss_pred HhhCCCCCEEEEEEECCCCHHHHHHHHHHHHHhC--CCCEEEEecCccccCCC
Confidence 1245889999999999432 233455555 999999 9999887644
|
This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation. |
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-21 Score=217.00 Aligned_cols=297 Identities=12% Similarity=0.041 Sum_probs=197.5
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC----CCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E 475 (817)
++++|.| |+++|.+.||+|++|+.++++++++.. .....++.+.+|+++|+++.|. +.+++++||++||+
T Consensus 47 ~~~~~~s---n~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~---~~~i~~~sG~~a~~ 120 (410)
T PRK13392 47 RVTIWCS---NDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGK---ESALLFTSGYVSND 120 (410)
T ss_pred eEEEEEC---CCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCC---CCEEEECcHHHHHH
Confidence 8999998 999999779999999999999986532 1112345788999999999983 67899999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccc
Q 003472 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (817)
Q Consensus 476 ~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (817)
.+++...+. . + .++|..+..+|+++..++..+|....
T Consensus 121 ~~i~~l~~~---~---------------~--g~~vi~~~~~h~s~~~~~~~~g~~~~----------------------- 157 (410)
T PRK13392 121 AALSTLGKL---L---------------P--GCVILSDALNHASMIEGIRRSGAEKQ----------------------- 157 (410)
T ss_pred HHHHHHhcC---C---------------C--CCEEEEehhhhHHHHHHHHHcCCeEE-----------------------
Confidence 999955111 0 1 24667778899988766555442210
Q ss_pred cCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003472 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (817)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~ 635 (817)
.+ .++|. +.+++.+++ ...++..+|++|++ .+..|.
T Consensus 158 -----~~----------------~~~d~------------------~~l~~~l~~----~~~~~t~~v~i~~~-~n~tG~ 193 (410)
T PRK13392 158 -----VF----------------RHNDL------------------ADLEEQLAS----VDPDRPKLIAFESV-YSMDGD 193 (410)
T ss_pred -----EE----------------eCCCH------------------HHHHHHHHh----ccCCCCEEEEEeCC-CCCCcc
Confidence 00 01221 223444443 12346779999998 899998
Q ss_pred ccCCHHHHHHHHHHHhhcCCcEEEeeeee-cc-ccccccchhhhcCC--CCcee--ecccccCCCCCcceEEEechHHHh
Q 003472 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGC--VPDIA--CYGKLLTGGVIPLAATLATNAVFD 709 (817)
Q Consensus 636 ~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-Gf-GRtG~~~a~e~~gv--~PDiv--tlgK~LggGy~PlsAvl~s~~i~d 709 (817)
+.+ +++|+++|++||+++|+||+|+ |+ |+.|.++ .++.++ .+|++ +++|++|. +-|.+++++++++
T Consensus 194 ~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~~~~~div~~tlsK~~g~---~GG~~~~~~~~~~ 265 (410)
T PRK13392 194 IAP----IEAICDLADRYNALTYVDEVHAVGLYGARGGGI-AERDGLMDRIDMIQGTLAKAFGC---LGGYIAASADLID 265 (410)
T ss_pred ccc----HHHHHHHHHHcCCEEEEECCccccCcCCCCCch-hhhccCCCCCcEEEEEChHhhhc---ccchhhcCHHHHH
Confidence 887 9999999999999999999998 54 6777654 466665 57887 99999874 1134678899988
Q ss_pred hhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcC-chhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEE
Q 003472 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ-TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCA 788 (817)
Q Consensus 710 ~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~-l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~g 788 (817)
.+..... .+.+|.+.+|++++++.++|+.++..+ ..+++.+ ..+++.+.+.+. ..+.+ .+.+-++.
T Consensus 266 ~l~~~~~----~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~----~~~~l~~~L~~~--g~~~~---~~~~~~~~ 332 (410)
T PRK13392 266 FVRSFAP----GFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQD----RVAALKAKLNAN--GIPVM---PSPSHIVP 332 (410)
T ss_pred HHHHhCc----chhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHH----HHHHHHHHHHHc--CCCCC---CCCCCEEE
Confidence 7653211 123567788999999999999886532 1222333 333333333221 22221 23454555
Q ss_pred EEEecCCCCCCcchHHHHHHHHH-HcCCC
Q 003472 789 IELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 789 Iel~~~~~~~~~~~~~~~~~~~l-~~Gv~ 816 (817)
+.+... .....+...++ ++||+
T Consensus 333 i~~~~~------~~~~~~~~~L~~~~GI~ 355 (410)
T PRK13392 333 VMVGDP------TLCKAISDRLMSEHGIY 355 (410)
T ss_pred EEeCCH------HHHHHHHHHHHHhCCEE
Confidence 554321 23456777776 56875
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-20 Score=209.45 Aligned_cols=313 Identities=11% Similarity=0.055 Sum_probs=204.7
Q ss_pred eEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC----CCCCCChHHHHHHHH
Q 003472 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAEL 451 (817)
Q Consensus 376 p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~ 451 (817)
|.++.+++|.+ ++ .+|+ +||||.+ +.++||..+|.+.+++.+++.++.... ...+..+...+++++
T Consensus 17 ~~~~~~~~g~~--~~-~~g~----~~id~~~---~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~ 86 (385)
T TIGR01825 17 IRVLESAQGPR--VR-VNGK----EVINLSS---NNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEK 86 (385)
T ss_pred ccccccCCCce--EE-ECCc----eEEEeec---cCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHH
Confidence 56788888875 77 8999 9999987 466899339999999999998764321 223457788999999
Q ss_pred HHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCC
Q 003472 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (817)
Q Consensus 452 L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~ 531 (817)
+++..+. +..++++||++|++.|++... ++.+.|..+..+|++...++.+.+...
T Consensus 87 l~~~~g~---~~~i~~~sG~~a~~~a~~~~~----------------------~~gd~vi~~~~~~~~~~~~~~~~g~~~ 141 (385)
T TIGR01825 87 LAKFKKT---EAALVFQSGFNTNQGVLSALL----------------------RKGDIVLSDELNHASIIDGLRLTKATK 141 (385)
T ss_pred HHHHhCC---CcEEEECcHHHHHHHHHHHhC----------------------CCCCEEEEEccccHHHHHHHHhcCCce
Confidence 9998873 467888999999999888761 112456677788887765554433210
Q ss_pred CCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcC
Q 003472 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (817)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (817)
. .+ + +.|. +.+++.+.+
T Consensus 142 ~----------------------------~~--~--------------~~d~------------------~~l~~~l~~- 158 (385)
T TIGR01825 142 K----------------------------IY--K--------------HADM------------------DDLDRVLRE- 158 (385)
T ss_pred E----------------------------Ee--C--------------CCCH------------------HHHHHHHHh-
Confidence 0 00 0 1111 234455543
Q ss_pred CCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee-c-cccccccchhhhcCCCCce----e
Q 003472 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGCVPDI----A 685 (817)
Q Consensus 612 ~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-G-fGRtG~~~a~e~~gv~PDi----v 685 (817)
....+.++|+++++ ++..|.+.+ +++|.++|++||+++|+||+++ | ++++|. +...++++.||. .
T Consensus 159 ---~~~~~~~~v~~~~v-~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~ 229 (385)
T TIGR01825 159 ---NPSYGKKLIVTDGV-FSMDGDVAP----LPEIVELAERYGAVTYVDDAHGSGVMGEAGR-GTVHHFGLEDKVDIQVG 229 (385)
T ss_pred ---hccCCCeEEEEecC-CcCCCCccC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC-ccHhhcCCCcCCcEEEE
Confidence 11245789999997 888888776 8999999999999999999995 3 455554 345566776663 5
Q ss_pred ecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHH
Q 003472 686 CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDL 765 (817)
Q Consensus 686 tlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~ 765 (817)
+++|++|+ +.|.+++++++++.+..... . +..+...+|+.++++.++|+.+++. .++.++....++++.+
T Consensus 230 s~sK~~~~---~gG~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~a~~~al~~~~~~---~~~~~~~~~~~~~l~~ 299 (385)
T TIGR01825 230 TLSKAIGV---VGGYAAGHKELIEYLKNRAR--P--FLFSTAQPPAVVAALAAAVDELQRS---PELMERLWDNTRFFKA 299 (385)
T ss_pred eccHHhhc---CCCEEecCHHHHHHHHHhCc--c--ccccCCCCHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHH
Confidence 99999963 23557888888888753211 1 1223346889999999999987542 1233333444454444
Q ss_pred HHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 766 ELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 766 ~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+.+. ..+.+. ..+.++++.+... .....+...++++||+
T Consensus 300 ~L~~~--g~~~~~---~~~~~~~~~~~~~------~~~~~~~~~L~~~gi~ 339 (385)
T TIGR01825 300 GLGKL--GYDTGG---SETPITPVVIGDE------KAAQEFSRRLFDEGIF 339 (385)
T ss_pred HHHHc--CCCCCC---CCCCEEEEEECCH------HHHHHHHHHHHHCCcE
Confidence 44332 222221 1233555554321 2345688888898874
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-20 Score=209.90 Aligned_cols=291 Identities=14% Similarity=0.044 Sum_probs=193.9
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhcc-------ccCCCC----CCChHHHHHHHHHHhhcCCCCcceEEEeC
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-------HVMFPE----NVYEPALECAELLLQGVGKGWASRAYFSD 468 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~-------~~~~~~----~~~~~~~eLae~L~~~~~~~~~~~v~f~~ 468 (817)
+++||.| |+|||++.||++.+++.+++.++. .....+ ..++...+++++|+++++. +.+++++
T Consensus 5 ~~~~~~s---~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~---~~~l~~~ 78 (370)
T PRK05937 5 LSIDFVT---NDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGA---PEAFIVP 78 (370)
T ss_pred ceEEeEC---CCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCC---CeEEEEC
Confidence 7899999 999999989999999999998872 222112 2568899999999999984 5789999
Q ss_pred ChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCcccc
Q 003472 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (817)
Q Consensus 469 SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~ 548 (817)
||+.||.+.+.. +. ++.++|..+..+|+++..++..... ..
T Consensus 79 sG~~a~~~~~~~----~~------------------~~~d~ii~d~~~H~sv~~~~~~~~~--~~--------------- 119 (370)
T PRK05937 79 SGYMANLGLCAH----LS------------------SVTDYVLWDEQVHISVVYSLSVISG--WH--------------- 119 (370)
T ss_pred ChHHHHHHHHHH----hC------------------CCCCEEEEEhhhhHHHHHHHHHcCC--ce---------------
Confidence 999999643222 11 2347999999999999887665311 00
Q ss_pred CCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 003472 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (817)
Q Consensus 549 ~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV 628 (817)
+.+ .++|+ +.+++.|+... ....+..+|++|++
T Consensus 120 -------------~~~--------------~~~d~------------------~~l~~~l~~~~--~~~~~~~~v~v~~v 152 (370)
T PRK05937 120 -------------QSF--------------RHNDL------------------DHLESLLESCR--QRSFGRIFIFVCSV 152 (370)
T ss_pred -------------EEe--------------cCCCH------------------HHHHHHHHhhh--ccCCCcEEEEEecC
Confidence 001 13443 45666665321 11123456889998
Q ss_pred cccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee-c-cccccccchhhhcC---CCCceeecccccCC-CCCcceEEE
Q 003472 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLG---CVPDIACYGKLLTG-GVIPLAATL 702 (817)
Q Consensus 629 ~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-G-fGRtG~~~a~e~~g---v~PDivtlgK~Lgg-Gy~PlsAvl 702 (817)
+++.|.+.| +++|+++|+++|++||+||+|+ | +|++|.++.. .++ +.+|+.|++|++|. | ++++
T Consensus 153 -~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~-~~~~~~~~~~~~tlsK~~g~~G----~~vl 222 (370)
T PRK05937 153 -YSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCH-SLGYENFYAVLVTYSKALGSMG----AALL 222 (370)
T ss_pred -CCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCchHH-hhCCCCCcEEEEechhhhhcCc----eEEE
Confidence 999999998 9999999999999999999997 4 6677754332 233 23678899999975 4 4567
Q ss_pred echHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEe
Q 003472 703 ATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA 782 (817)
Q Consensus 703 ~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG 782 (817)
+.+++.+.+..... .+.++.+.+|.+++++.++++++++.+ +...++.+.+.++|.+. +... +
T Consensus 223 ~~~~~~~~~~~~~~----~~~~s~~~~~~~~~a~~aal~~l~~~~--~~~~~~l~~l~~~l~~~----l~~~-------~ 285 (370)
T PRK05937 223 SSSEVKQDLMLNSP----PLRYSTGLPPHLLISIQVAYDFLSQEG--ELARKQLFRLKEYFAQK----FSSA-------A 285 (370)
T ss_pred cCHHHHHHHHHhCC----CCeecCCCCHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHh----cCCC-------C
Confidence 77776665542111 234556689999999999999997632 23344444454444332 2211 1
Q ss_pred eeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 783 LGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 783 ~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.|....|.+... ....+...+.++||+
T Consensus 286 ~~~~~~i~~~~~-------~~~~~~~~L~~~gi~ 312 (370)
T PRK05937 286 PGCVQPIFLPGI-------SEQELYSKLVETGIR 312 (370)
T ss_pred CCCEEEEEeCCh-------hHHHHHHHHHHCCee
Confidence 122333444321 235666777788874
|
|
| >COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-22 Score=224.09 Aligned_cols=211 Identities=18% Similarity=0.152 Sum_probs=153.6
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCC--------CCcHHHHHHhCCCCccccCCCc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH--------DSDSRFLFTKLPSLSLRRNFPS 108 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~--------~~d~~~~~~~~~~~~~~~~~~~ 108 (817)
|+.+||.||.+++|||++++||||.|. ++|++|++|||.++..+. ..-++++++.++++
T Consensus 1 ~~~iMv~GT~S~~GKS~~~aglcRi~~-----~~G~~V~PFK~QNMsLNs~it~~G~EIgraQ~~QA~Aa~i-------- 67 (486)
T COG1492 1 MKAIMVQGTTSDAGKSFLVAGLCRILA-----RRGYRVAPFKSQNMSLNSAITPGGGEIGRAQALQALAAGI-------- 67 (486)
T ss_pred CCccEEEeccCCcchhhhhhhhhHHHH-----hcCCccCCCchhhcccccEECCCCcEEehhhhHHHHHcCC--------
Confidence 568999999999999999999999994 999999999998775432 23445555554443
Q ss_pred ccccccchhhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHh-Hh
Q 003472 109 SLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAE-RE 187 (817)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~-~~ 187 (817)
.+...++|+.++|. .... ...+....+..-..+.. +.
T Consensus 68 ---------------------~p~v~mNPvLLKP~------sd~~---------------sQVIv~G~~~G~~s~~~yy~ 105 (486)
T COG1492 68 ---------------------EPSVHMNPVLLKPC------SDTG---------------SQVIVMGKDIGRKSAVEYYQ 105 (486)
T ss_pred ---------------------CCccccCCEEEeec------CCCc---------------eEEEEecccccccChHHHHH
Confidence 55566667666666 1111 12333444433333333 22
Q ss_pred cCCCCChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCC--CCCCCchhhHhhhCCCCEEEEEcCCCChHH
Q 003472 188 SGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASP--GPSGSLQCDLYRPFRLPGILVGDGRLGGIS 265 (817)
Q Consensus 188 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p--~~~~~~~~~la~~l~~pvilV~~~~~g~i~ 265 (817)
.+....+..+.+.++++.++ +|+|++||||+.+.. ...+..|+.+|+..++|||||+|+++|+.+
T Consensus 106 ~~~~~l~~~v~~s~~~l~~~-------------~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~dapvILV~DIdRGGvf 172 (486)
T COG1492 106 EGKGLLWVAVKESLERLDRE-------------YDVVVIEGAGSPAEINLRDRDIANMGVAEIADAPVILVGDIDRGGVF 172 (486)
T ss_pred HHHHHHHHHHHHHHHHhhhc-------------ccEEEEecCCChhhcCcccccccceeeehhcCCCEEEEEeeccccee
Confidence 13334566777777766655 999999999976654 336799999999999999999999998877
Q ss_pred HHHH-HHHHHHhC-CCcEEEEEEccC------CCCCHHHHHHhhcCCCcEEe-cCCCCCCC
Q 003472 266 GTIS-AYESLKLR-GYDVVAVVFEDH------GLVNEVPLMSYLRNRVPVLV-LPPLPQDS 317 (817)
Q Consensus 266 ~~~~-~~~~l~~~-~~~v~gvi~n~~------~~~~~~~l~~~~~~~~pvlg-iP~~~~~~ 317 (817)
+.+. |+++|... .-+|+|+|+|++ .....++|++.+ ++|||| +||++..-
T Consensus 173 Asl~GT~~lL~~~~r~~VkG~iINkFRGd~~ll~~gik~Le~~t--g~~vlGv~P~~~~~~ 231 (486)
T COG1492 173 ASLYGTLALLPESDRALVKGFIINKFRGDESLLDPGLKWLEELT--GVPVLGVLPYLKDAL 231 (486)
T ss_pred eeeeehheecCHhHhcceeEEEEeeeCCCHHHHhhHHHHHHHhh--CCeeEeecccccccc
Confidence 7776 77777543 347999999998 345688899988 999999 99998754
|
|
| >cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-20 Score=179.19 Aligned_cols=89 Identities=26% Similarity=0.341 Sum_probs=80.0
Q ss_pred CCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC------CH
Q 003472 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV------NE 294 (817)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~------~~ 294 (817)
+|++|||||||+++|+..+.+++|+++.+++|+|+|++.++|+++|++.+++.++.+|..+.|||.|+.... +.
T Consensus 39 ~d~vliEGaGg~~~p~~~~~~~~d~~~~~~~~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~~~~~~ 118 (134)
T cd03109 39 YDFVLVEGAGGLCVPLKEDFTNADVAKELNLPAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEKEGLATLNV 118 (134)
T ss_pred CCEEEEECCCccccCCCCCCCHHHHHHHhCCCEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCccchhhhhH
Confidence 367999999999999999999999999999999999999999999999999999999999999999997322 25
Q ss_pred HHHHHhhcCCCcEEe-cC
Q 003472 295 VPLMSYLRNRVPVLV-LP 311 (817)
Q Consensus 295 ~~l~~~~~~~~pvlg-iP 311 (817)
+.+++.+ ++|++| +|
T Consensus 119 ~~i~~~~--gip~LG~IP 134 (134)
T cd03109 119 ETIERLT--GIPVLGIVP 134 (134)
T ss_pred HHHHHhc--CCCEEEeCC
Confidence 5666666 999999 77
|
The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors. |
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.5e-20 Score=188.83 Aligned_cols=306 Identities=17% Similarity=0.170 Sum_probs=215.8
Q ss_pred EEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC----CCCCCChHHHHHHHHH
Q 003472 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELL 452 (817)
Q Consensus 377 ~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L 452 (817)
.|+.+.+|..+.+.-.++ .+|.|++ |++||.++||+|++|-++++++|+... |.+++.+.+..|+.+|
T Consensus 50 rVi~s~q~p~i~v~G~~k-----~ilnFca---NnYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~ki 121 (417)
T KOG1359|consen 50 RVITSRQGPTIQVKGSDK-----KILNFCA---NNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKI 121 (417)
T ss_pred eEEeecccceEEEecccc-----ceeeecc---cccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHH
Confidence 478888888655433332 6899998 999999889999999999999987543 5667889999999999
Q ss_pred HhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCC
Q 003472 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (817)
Q Consensus 453 ~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~ 532 (817)
+.+.+. ++.+.++|+.+||.+++-..+ + ..+-|.-+.-.|.+.++++.+.. .|
T Consensus 122 Aqfh~r---ED~ilypscfdANag~feail---~-------------------pedAvfSDeLNhASIIdGirLck--ry 174 (417)
T KOG1359|consen 122 AQFHGR---EDTILYPSCFDANAGAFEAIL---T-------------------PEDAVFSDELNHASIIDGIRLCK--RY 174 (417)
T ss_pred HHHhCC---CceEEeccccccchHHHHHhc---C-------------------hhhhhhccccccchhhhhhHHHh--hh
Confidence 999874 789999999999999988772 1 12456778899999998888863 22
Q ss_pred CCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCC
Q 003472 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (817)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (817)
+.. |. ..+|..+.+
T Consensus 175 ~h~----------------------------------------------dv------------------~~l~~~l~~-- 188 (417)
T KOG1359|consen 175 RHV----------------------------------------------DV------------------FDLEHCLIS-- 188 (417)
T ss_pred ccc----------------------------------------------hh------------------HHHHHHHHH--
Confidence 210 00 112222222
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeee-ecc-ccccccchhhhcCC--CCcee--e
Q 003472 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TGF-WRLGVETTADLLGC--VPDIA--C 686 (817)
Q Consensus 613 ~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~-TGf-GRtG~~~a~e~~gv--~PDiv--t 686 (817)
....+...|+.|.+ .+|.|.+.| +++|.+|+++||+||.+||.| ||| |-|| .+..|.+|+ ++||+ |
T Consensus 189 --a~k~r~klv~TDg~-FSMDGdiaP----l~ei~~La~kYgaLlfiDecHaTgf~G~tG-rGt~E~~~vm~~vdiinsT 260 (417)
T KOG1359|consen 189 --ACKMRLKLVVTDGV-FSMDGDIAP----LEEISQLAKKYGALLFIDECHATGFFGETG-RGTAEEFGVMGDVDIINST 260 (417)
T ss_pred --hhhheEEEEEecce-eccCCCccc----HHHHHHHHHhcCcEEEEeecccceeecCCC-CChHHHhCCCCcceehhhh
Confidence 12457789999998 899999999 999999999999999999999 454 4444 456688897 67877 9
Q ss_pred cccccCC---CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhc-CcCchhcHHHHHHHHHHH
Q 003472 687 YGKLLTG---GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK-DPQTNHNIIPERRILREL 762 (817)
Q Consensus 687 lgK~Lgg---Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~-~~~l~~~l~~~~~~lg~~ 762 (817)
+||++|| || +.+++++.+.+...+ ++++++++. .|.....+.++++.+- ......+...+.+++.+.
T Consensus 261 LgKAlGga~GGy-----ttgp~~li~llrqr~--RpylFSnsl--ppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~ 331 (417)
T KOG1359|consen 261 LGKALGGASGGY-----TTGPKPLISLLRQRS--RPYLFSNSL--PPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREF 331 (417)
T ss_pred hhhhhcCCCCCC-----ccCChhHHHHHHhcC--CceeecCCC--ChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 9999994 76 899999999987654 456655544 4555555566777763 333344444445555443
Q ss_pred HHHHHHHHH-HcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 763 WDLELIQQI-SSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 763 l~~~l~~~l-~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+........ +.||++- +-+.++ +....+.+.+|.+|+|
T Consensus 332 me~aGftIsg~~hPI~p----------v~lGda------~lA~~~ad~lLk~Gi~ 370 (417)
T KOG1359|consen 332 MEAAGFTISGASHPICP----------VMLGDA------RLASKMADELLKRGIY 370 (417)
T ss_pred HHhcCceecCCCCCccc----------eecccH------HHHHHHHHHHHhcCce
Confidence 322222222 2455432 222233 5667778888888876
|
|
| >PRK05632 phosphate acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-20 Score=223.59 Aligned_cols=184 Identities=16% Similarity=0.109 Sum_probs=139.2
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhCCCCccccCCCcccccccch
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (817)
|++|||+||+|++|||+||+||+++|+ ++|++|+|||||+++.- .. .......
T Consensus 2 ~k~l~I~~T~t~~GKT~vslgL~~~L~-----~~G~~Vg~fKPi~~~p~--~~-~~~~~~~------------------- 54 (684)
T PRK05632 2 SRSIYLAPTGTGVGLTSVSLGLMRALE-----RKGVKVGFFKPIAQPPL--TM-SEVEALL------------------- 54 (684)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHH-----hCCCeEEEeCCcccCCC--CH-HHHHHHH-------------------
Confidence 679999999999999999999999994 89999999999998621 10 1111000
Q ss_pred hhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHhHhcCCCCChHH
Q 003472 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSK 196 (817)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~ 196 (817)
.. . +.....++
T Consensus 55 ------------------------------------------------------------------~~--~-~~~~~~~~ 65 (684)
T PRK05632 55 ------------------------------------------------------------------AS--G-QLDELLEE 65 (684)
T ss_pred ------------------------------------------------------------------hc--c-CChHHHHH
Confidence 00 0 11234577
Q ss_pred HHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCCh----HHHHHHHHH
Q 003472 197 VIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGG----ISGTISAYE 272 (817)
Q Consensus 197 i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~----i~~~~~~~~ 272 (817)
|.+.|.++.++ +|++||||+++.........+|+|+|+.+++|||||++.+.++ ++++..+.+
T Consensus 66 I~~~~~~l~~~-------------~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~~~si~d~~~~i~~~~~ 132 (684)
T PRK05632 66 IVARYHALAKD-------------CDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGGNDTPEELAERIELAAS 132 (684)
T ss_pred HHHHHHHhccC-------------CCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCCCCChHHHHHHHHHHHH
Confidence 88888776544 9999999998777655556789999999999999999999887 567778888
Q ss_pred HHH-hCCCcEEEEEEcc--CCCCCHHHHHHhh------------------cC-CCcEEe-cCCCCCCCcchhhhhhccch
Q 003472 273 SLK-LRGYDVVAVVFED--HGLVNEVPLMSYL------------------RN-RVPVLV-LPPLPQDSSNDLMEWFDESH 329 (817)
Q Consensus 273 ~l~-~~~~~v~gvi~n~--~~~~~~~~l~~~~------------------~~-~~pvlg-iP~~~~~~~~~~~~~l~~~~ 329 (817)
.+. .++.+++|||+|+ +..+....+.+.+ .. ++|++| ||+.+.+.++++.+..+.+.
T Consensus 133 ~l~~~~~~~v~GVIvNr~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~LG~IP~d~~L~~~t~~~i~~~L~ 212 (684)
T PRK05632 133 SFGGAKNANILGVIINKLNAPVDEQGRTRPDLSEIFDDSSKANVDPSKLFASSPLPLLGVVPWSPDLIAPRVIDIAKHLG 212 (684)
T ss_pred HhccCCCCcEEEEEEECCCCCHHHHHHHHHHHHhhhccccccchhcchhhhcCCCceEEEccCccccCCCCHHHHHHHcC
Confidence 887 7789999999999 4333333332222 12 899999 99999999998877666654
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-18 Score=194.25 Aligned_cols=315 Identities=16% Similarity=0.109 Sum_probs=199.0
Q ss_pred EEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC----CCCCCChHHHHHHHHHH
Q 003472 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLL 453 (817)
Q Consensus 378 vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~ 453 (817)
.+++++|. ++||.+|+ .||||+++ .++||..+|++.++++++++++.+.. +..+..+...++++.|+
T Consensus 27 ~~~~~~~~--~~~~~~g~----~~i~l~~~---~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la 97 (397)
T PRK06939 27 VITSPQGA--DITVADGK----EVINFCAN---NYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLA 97 (397)
T ss_pred cccCCCCc--eEEecCCC----eEEEeecc---CccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHH
Confidence 45567775 58999999 99999884 56899559999999999998765421 12245677889999999
Q ss_pred hhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCC
Q 003472 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (817)
Q Consensus 454 ~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~ 533 (817)
++.+. +..+++++|++|+..+++... + . ...||. +..+|.+...++.+.+...
T Consensus 98 ~~~g~---~~~i~~tsG~~a~~~~~~~l~----~-~----------------gd~vi~-~~~~~~~~~~~~~~~~~~~-- 150 (397)
T PRK06939 98 KFLGT---EDAILYSSCFDANGGLFETLL----G-K----------------EDAIIS-DALNHASIIDGVRLCKAKR-- 150 (397)
T ss_pred HHhCC---CcEEEEcChHHHHHHHHHHhC----C-C----------------CCEEEE-EhhhhHHHHHHHHhcCCce--
Confidence 98873 467788889999999887651 1 1 124444 4455544333333322110
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
+..| ++|. +.+++.+++..
T Consensus 151 ----------------------------~~~~--------------~~d~------------------~~l~~~i~~~~- 169 (397)
T PRK06939 151 ----------------------------YRYA--------------NNDM------------------ADLEAQLKEAK- 169 (397)
T ss_pred ----------------------------EEeC--------------CCCH------------------HHHHHHHHhhh-
Confidence 0001 1221 33444444210
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee-cc-ccccccchhhhcCC--CCcee--ec
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGC--VPDIA--CY 687 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-Gf-GRtG~~~a~e~~gv--~PDiv--tl 687 (817)
....++.+|+++++ ++..|...+ +++|.++|++||+++|+||++. |+ ++.|.. ....+++ .+|++ ++
T Consensus 170 -~~~~~~~~v~~~~v-~~~~G~~~~----~~~l~~la~~~~~~li~De~~~~g~~~~~~~~-~~~~~~~~~~~~i~~~S~ 242 (397)
T PRK06939 170 -EAGARHKLIATDGV-FSMDGDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENGRG-TVEHFGVMDRVDIITGTL 242 (397)
T ss_pred -ccCCCCeEEEEecC-cCCCCCcCC----HHHHHHHHHHhCCEEEEECcccccCcCCCCCC-HHHHcCCCCCCcEEEEEC
Confidence 11236789999997 888887554 9999999999999999999994 53 444442 3455566 46787 89
Q ss_pred ccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHH
Q 003472 688 GKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (817)
Q Consensus 688 gK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l 767 (817)
+|+++|+ ++|.+++++++++.+.... .. +..+.+.+|..++++.++++.+++. +++.++.+..++++.+.+
T Consensus 243 sK~~~g~--r~G~v~~~~~~~~~l~~~~--~~--~~~~~~~~~~~~~a~~~al~~~~~~---~~~~~~~~~~~~~l~~~L 313 (397)
T PRK06939 243 GKALGGA--SGGYTAGRKEVIDWLRQRS--RP--YLFSNSLAPAIVAASIKVLELLEES---DELRDRLWENARYFREGM 313 (397)
T ss_pred HHHhCcc--CceEEEeCHHHHHHHHHhC--cc--ccccCCCCHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHH
Confidence 9999654 6788999999998875321 11 1123335677788899999988642 233444444444444433
Q ss_pred HHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 768 IQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 768 ~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+ ... .-+.+.|.++.+.+... .....|...++++||.
T Consensus 314 ~~----~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~L~~~gI~ 351 (397)
T PRK06939 314 TA----AGF-TLGPGEHPIIPVMLGDA------KLAQEFADRLLEEGVY 351 (397)
T ss_pred HH----cCC-CcCCCCCCEEEEEECCH------HHHHHHHHHHHHCCce
Confidence 22 221 11224566665544321 2346788888898874
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-18 Score=193.41 Aligned_cols=316 Identities=14% Similarity=0.105 Sum_probs=200.7
Q ss_pred EEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhcccc-C---CCCCCChHHHHHHHHH
Q 003472 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-M---FPENVYEPALECAELL 452 (817)
Q Consensus 377 ~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~-~---~~~~~~~~~~eLae~L 452 (817)
.++.++.|.. +++.+|+ +||||++ +.+||++.+|++++++.+++.+++.. . +..+..+...+|.+.|
T Consensus 22 ~~~~~~~~~~--~~~~~g~----~~i~~~~---~~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~i 92 (393)
T TIGR01822 22 RIITSPQGAD--IRVADGR----EVLNFCA---NNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKI 92 (393)
T ss_pred cccccCCCce--EEecCCc----eEEEeeC---CCccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHH
Confidence 3556666764 7778999 9999999 47899998999999999999886432 1 1113366778999999
Q ss_pred HhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCC
Q 003472 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (817)
Q Consensus 453 ~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~ 532 (817)
+++++. +.++.++||++|+..++.... + +.+.|..+.-+|.+...++.+.+...
T Consensus 93 a~~~g~---~~~ii~~~~~~a~~~~~~~l~----~------------------~gd~vi~~~~~~~s~~~~~~~~~~~~- 146 (393)
T TIGR01822 93 AAFLGT---EDTILYASCFDANGGLFETLL----G------------------AEDAIISDALNHASIIDGVRLCKAKR- 146 (393)
T ss_pred HHHhCC---CcEEEECchHHHHHHHHHHhC----C------------------CCCEEEEeccccHHHHHHHHhcCCce-
Confidence 999984 567777999999997765541 1 12344445566665444333322110
Q ss_pred CCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCC
Q 003472 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (817)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (817)
+. +.++|. +.+++.+.+..
T Consensus 147 -----------------------------~~--------------~~~~d~------------------~~l~~~i~~~~ 165 (393)
T TIGR01822 147 -----------------------------YR--------------YANNDM------------------ADLEAQLKEAR 165 (393)
T ss_pred -----------------------------EE--------------eCCCCH------------------HHHHHHHHhhh
Confidence 00 002332 34555554310
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee-cc-ccccccchhhhcCC--CCcee--e
Q 003472 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGC--VPDIA--C 686 (817)
Q Consensus 613 ~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-Gf-GRtG~~~a~e~~gv--~PDiv--t 686 (817)
....+...|+++++ +...|.+.+ +++|.++|++||++||+||+|. |+ |..|.. ..+..++ .+|++ +
T Consensus 166 --~~~~~~~~v~~~~v-~~~tG~~~~----l~~i~~la~~~~~~li~De~~~~g~~~~~~~~-~~~~~~~~~~~di~~~s 237 (393)
T TIGR01822 166 --AAGARHRLIATDGV-FSMDGVIAP----LDEICDLADKYDALVMVDECHATGFLGPTGRG-SHELCGVMGRVDIITGT 237 (393)
T ss_pred --hcCCCceEEEEeCC-ccCCCCcCC----HHHHHHHHHHcCCEEEEECCccccCcCCCCCc-hHHhcCCCCCCeEEEEE
Confidence 11236778999998 788888876 8999999999999999999993 33 333332 3445555 46777 7
Q ss_pred cccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHH
Q 003472 687 YGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLE 766 (817)
Q Consensus 687 lgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~ 766 (817)
++|.++|. .+|.+++++++++.+.... .. +..+.+.+|..+++++++|+.+++ .+++.++.+...+++.+.
T Consensus 238 ~sK~l~g~--r~G~~~~~~~~~~~l~~~~--~~--~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~~l~~~ 308 (393)
T TIGR01822 238 LGKALGGA--SGGFTTARKEVVELLRQRS--RP--YLFSNSLPPAVVGASIKVLEMLEA---SNELRDRLWANTRYFRER 308 (393)
T ss_pred ChHHhhCC--CcEEEEeCHHHHHHHHHhC--cc--ceecCCCCHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHH
Confidence 89999853 6788999999998875321 11 112223467778888999988754 123344444444444444
Q ss_pred HHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 767 LIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 767 l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+. ..... ...+.+..+.+.+. .....+...++++||+
T Consensus 309 L~~~--g~~~~---~~~~~~~~i~~~~~------~~~~~l~~~L~~~gI~ 347 (393)
T TIGR01822 309 MEAA--GFDIK---PADHPIIPVMLYDA------VLAQRFARRLLEEGIY 347 (393)
T ss_pred HHHc--CCCCC---CCCCCEEEEEeCCH------HHHHHHHHHHHHCCee
Confidence 3321 22211 12344566655432 2346688888888874
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-18 Score=189.75 Aligned_cols=310 Identities=12% Similarity=0.036 Sum_probs=199.3
Q ss_pred EEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCC----CCCCChHHHHHHHHHHh
Q 003472 379 IDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQ 454 (817)
Q Consensus 379 i~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~----~~~~~~~~~eLae~L~~ 454 (817)
++++.|.+ ++ .+|+ +||||.++ .++||..+|+|++|+.+++.+++.... ....++...++.+.|++
T Consensus 3 ~~~~~~~~--~~-~~g~----~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~ 72 (360)
T TIGR00858 3 LDRGPGPE--VV-RDGR----RLLNFSSN---DYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAE 72 (360)
T ss_pred cccCCCCe--EE-ECCc----eEEecccC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHH
Confidence 34666765 44 6899 99999996 579963399999999999988654211 11235678889999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
+.+. +..+++++|++++..+++.+ .. +.+.|.....+|+....++...+...
T Consensus 73 ~~~~---~~~i~~~~G~~~~~~~l~~~----~~------------------~gd~v~~~~~~~~~~~~~~~~~g~~~--- 124 (360)
T TIGR00858 73 WKGT---EAALLFSSGYLANVGVISAL----VG------------------KGDLILSDALNHASLIDGCRLSGARV--- 124 (360)
T ss_pred HhCC---CCEEEECchHHHHHHHHHHh----CC------------------CCCEEEEEccccHHHHHHHHhcCCce---
Confidence 8873 56788889999999887655 11 12345556667776554443332110
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
..++ .+|. +.+++.+++
T Consensus 125 -------------------------~~~~----------------~~d~------------------~~l~~~~~~---- 141 (360)
T TIGR00858 125 -------------------------RRYR----------------HNDV------------------EHLERLLEK---- 141 (360)
T ss_pred -------------------------EEec----------------CCCH------------------HHHHHHHHH----
Confidence 0000 1121 345556653
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc--cchhhhcCCCCc-----eeec
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVPD-----IACY 687 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~--~~a~e~~gv~PD-----ivtl 687 (817)
....+.++|+++++ ....|...+ +++|.++|+++|+++|+||+++ +|+.+. .....++++.|| +.++
T Consensus 142 ~~~~~~~~v~~~~~-~~~~G~~~~----~~~i~~l~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~i~i~s~ 215 (360)
T TIGR00858 142 NRGERRKLIVTDGV-FSMDGDIAP----LPQLVALAERYGAWLMVDDAHG-TGVLGEDGRGTLEHFGLKPEPVDIQVGTL 215 (360)
T ss_pred cccCCCeEEEEeCC-ccCCCCCcC----HHHHHHHHHHcCcEEEEECccc-ccCcCCCCCchHHhcCCCccCCcEEEEec
Confidence 11135689999997 777787665 8999999999999999999995 555543 223456777666 5699
Q ss_pred ccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHH
Q 003472 688 GKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (817)
Q Consensus 688 gK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l 767 (817)
+|++|. +.|.+++++++++.+..... .+..+.+.++.+++++.++++.++.. +++.+.....++++.+.+
T Consensus 216 sK~~~~---~gG~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~al~~~~~~---~~~~~~~~~~~~~l~~~L 285 (360)
T TIGR00858 216 SKALGS---YGAYVAGSQALIDYLINRAR----TLIFSTALPPAVAAAALAALELIQEE---PWRREKLLALIARLRAGL 285 (360)
T ss_pred hhhhhc---cCcEEEcCHHHHHHHHHhCc----cceecCCCCHHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHHHHHH
Confidence 999975 22668888988887643211 12344567889899999999887642 233344444444444333
Q ss_pred HHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 768 IQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 768 ~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
. +.+. .-....|.++.+.+... .....+...++++||+
T Consensus 286 ~----~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~gI~ 323 (360)
T TIGR00858 286 E----ALGF-TLMPSCTPIVPVIIGDN------ASALALAEELQQQGIF 323 (360)
T ss_pred H----HcCC-ccCCCCCCEEEEEeCCH------HHHHHHHHHHHHCCee
Confidence 2 2332 11123466777776432 2345688888888874
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-18 Score=197.52 Aligned_cols=330 Identities=13% Similarity=0.104 Sum_probs=202.6
Q ss_pred CCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCC-CHHHHHHHHHHHHhccccC---C-CCCCChHHHHH
Q 003472 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATL-QIELARDMGYTAARFGHVM---F-PENVYEPALEC 448 (817)
Q Consensus 374 ~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~-hP~V~~Ai~~q~~~~~~~~---~-~~~~~~~~~eL 448 (817)
....++++....+-+-+...|+ .++.|+|.| +++||.++ ++.+.+++.+++++++... . ..+.++.+.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~n~~s---~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~el 151 (489)
T PLN02483 77 AWFDVVERVSNDNNKTLKRTTK--TRRCLNLGS---YNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHREL 151 (489)
T ss_pred CeEEEEEeecCCCCceEEecCC--CceEEEeec---CCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHH
Confidence 3344666654443222222232 238999999 99999974 5788999999999887532 1 12357899999
Q ss_pred HHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccC
Q 003472 449 AELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQA 528 (817)
Q Consensus 449 ae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~ 528 (817)
+++|+++.+. +..+++++|+.||..++.... ++.+.|..+..+|.+...++..+|
T Consensus 152 e~~lA~~~g~---~~ai~~~~G~~an~~~i~al~----------------------~~Gd~Vi~d~~~h~s~~~~~~~~G 206 (489)
T PLN02483 152 EELVARFVGK---PAAIVFGMGYATNSTIIPALI----------------------GKGGLIISDSLNHNSIVNGARGSG 206 (489)
T ss_pred HHHHHHHhCC---CcEEEECCHHHHHHHHHHHhC----------------------CCCCEEEEcchhhHHHHHHHHHcC
Confidence 9999999984 567778999999997776651 123456677777776665554443
Q ss_pred CCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHH
Q 003472 529 PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608 (817)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L 608 (817)
... ..+ +++|++ ++ .+.+++.+
T Consensus 207 a~v------------------------------~~~--------------~~~d~~----------~l----e~~l~~~i 228 (489)
T PLN02483 207 ATI------------------------------RVF--------------QHNTPS----------HL----EEVLREQI 228 (489)
T ss_pred CeE------------------------------EEE--------------eCCCHH----------HH----HHHHHhhh
Confidence 211 001 123321 11 12223222
Q ss_pred hcCCCC-CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee-c-cccccccchhhhcCCCC---
Q 003472 609 LQNPGL-KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGCVP--- 682 (817)
Q Consensus 609 ~~~~~~-~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-G-fGRtG~~~a~e~~gv~P--- 682 (817)
.....+ ..+.....|++|++ .++.|.+.+ +++|.++|++||++||+||+|+ | +|++|.. ..+++++.|
T Consensus 229 ~~~~p~t~~p~~k~livve~v-~s~~G~~~~----l~~I~~la~~~~~~livDEa~s~g~~G~~G~g-~~~~~~v~~~~~ 302 (489)
T PLN02483 229 AEGQPRTHRPWKKIIVIVEGI-YSMEGELCK----LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRG-VCELLGVDPADV 302 (489)
T ss_pred hccccccccCCceEEEEECCC-CCCCCcccC----HHHHHHHHHHcCCEEEEECcCccCccCCCCCc-hHHhcCCCcccC
Confidence 110000 11223468999998 888888776 9999999999999999999996 2 4666654 567888765
Q ss_pred cee--ecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCC--CCCHHHHHHHHHHHHHhcCcC---chhcHHHH
Q 003472 683 DIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSY--SAHALGCAAAAKSIKWFKDPQ---TNHNIIPE 755 (817)
Q Consensus 683 Div--tlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~--~gnPla~AAAlA~L~~l~~~~---l~~~l~~~ 755 (817)
||+ +++|++|. +.|.+++++++++.+... .++++| +.+|..++++.++|+++..++ ...+..++
T Consensus 303 dI~~~SfSKs~g~---~GG~i~~~~~li~~l~~~------~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~ 373 (489)
T PLN02483 303 DIMMGTFTKSFGS---CGGYIAGSKELIQYLKRT------CPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQ 373 (489)
T ss_pred cEEEEecchhccc---CceEEEcCHHHHHHHHHh------CccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHH
Confidence 776 99999973 124588899999988532 234444 358889999999999886422 11112222
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 756 RRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 756 ~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
-+...+++.+.|.+. ..+...+ ..+.+..+.+... .....|...++++||.
T Consensus 374 l~~~~~~l~~~L~~~--G~~v~~~--~~sp~~~l~l~~~------~~~~~~~~~Ll~~GI~ 424 (489)
T PLN02483 374 IRENSNFFRSELQKM--GFEVLGD--NDSPVMPIMLYNP------AKIPAFSRECLKQNVA 424 (489)
T ss_pred HHHHHHHHHHHHHHC--CCcccCC--CCCCEEEEEECCH------HHHHHHHHHHHHCCcE
Confidence 223333333333221 1222211 1234555555433 2345688889999974
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-19 Score=190.43 Aligned_cols=253 Identities=15% Similarity=0.060 Sum_probs=197.6
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhccccC----CCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHh
Q 003472 410 TQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF 485 (817)
Q Consensus 410 ~~~LGh~~hP~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~ 485 (817)
|.+||.+.||+|.+|+.+.+++++... ..++++..+++|+++|+++-.+ +-++.++|-.-||++.|-..-+..
T Consensus 179 NDYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK---~aALlFsSCfVANDstLftLak~l 255 (570)
T KOG1360|consen 179 NDYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQK---EAALLFSSCFVANDSTLFTLAKKL 255 (570)
T ss_pred CccccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcC---cceeeeeeeeeccchHHHHHHHHC
Confidence 677888779999999999999987543 2345678899999999999874 578899999999999998762221
Q ss_pred hccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCC
Q 003472 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP 565 (817)
Q Consensus 486 t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P 565 (817)
...+|.-+.+.|.+++.++.-++.+.+-
T Consensus 256 --------------------pgcei~SD~gNHASMI~GIrns~v~K~I-------------------------------- 283 (570)
T KOG1360|consen 256 --------------------PGCEIFSDEGNHASMIQGIRNSRVPKHI-------------------------------- 283 (570)
T ss_pred --------------------CCcEEeccccchHHHHHHhhhcCCccee--------------------------------
Confidence 2478999999999988877666543221
Q ss_pred chhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHH
Q 003472 566 EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (817)
Q Consensus 566 ~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~ 645 (817)
..|||. ++|++.|+.. .+.....|-+|.| .+|.|.+.| +++
T Consensus 284 ------------FrHND~------------------~hL~~lL~~~----~~svPKivAFEtV-hSM~Gavcp----lee 324 (570)
T KOG1360|consen 284 ------------FRHNDL------------------DHLEQLLQSS----PKSVPKIVAFETV-HSMDGAVCP----LEE 324 (570)
T ss_pred ------------eccCCH------------------HHHHHHHHhC----CCCCCceEEEeee-eccCCCcCC----HHH
Confidence 126775 6788888863 3445567788998 999999999 999
Q ss_pred HHHHHhhcCCcEEEeeeeecccccccc--chhhhcCC--CCcee--ecccccC--CCCCcceEEEechHHHhhhcCCCcc
Q 003472 646 LVKECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGC--VPDIA--CYGKLLT--GGVIPLAATLATNAVFDSFVGDSKL 717 (817)
Q Consensus 646 Lr~Lc~~~GilLI~DEV~TGfGRtG~~--~a~e~~gv--~PDiv--tlgK~Lg--gGy~PlsAvl~s~~i~d~~~~~~~~ 717 (817)
|.+++++||++-.+||||. .|-.|.. +..|+-|| +-||+ |+||++| ||| +..+..+.|.+++.+.
T Consensus 325 lcDvah~yGAiTFlDEVHA-VGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVGGY-----IAat~~LvDmiRSyAa- 397 (570)
T KOG1360|consen 325 LCDVAHKYGAITFLDEVHA-VGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVGGY-----IAATRKLVDMIRSYAA- 397 (570)
T ss_pred HHHHHHHhCceeeeehhhh-hccccCCCCCccccCCcchhhhhcccchhhhcccccce-----ehhhhhHHHHHHHhcC-
Confidence 9999999999999999994 6667774 34577777 56888 9999999 687 8899999999976432
Q ss_pred ceeecccCCCCCHHHHHHHHHHHHHhcCc---CchhcHHHHHHHHHHHHHHH
Q 003472 718 KALLHGHSYSAHALGCAAAAKSIKWFKDP---QTNHNIIPERRILRELWDLE 766 (817)
Q Consensus 718 ~~~~h~~T~~gnPla~AAAlA~L~~l~~~---~l~~~l~~~~~~lg~~l~~~ 766 (817)
.+.+|.+-.|.-++-|++++++++.+ .++..-++++.++.+.|.+.
T Consensus 398 ---GFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~ 446 (570)
T KOG1360|consen 398 ---GFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL 446 (570)
T ss_pred ---ceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc
Confidence 46789999999999999999999753 24444556666666655443
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-16 Score=174.53 Aligned_cols=298 Identities=12% Similarity=0.035 Sum_probs=186.3
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC----CCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E 475 (817)
.||.||+ +.+|||.+||+|.+|++++++++.+.. ......+...++.+.|+++.+. +..++++||++|+.
T Consensus 2 ~~~~~~~---~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~---~~~iv~~sg~~a~~ 75 (349)
T cd06454 2 KVLNFCS---NDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGK---EAALVFSSGYAAND 75 (349)
T ss_pred Cceeccc---CCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCC---CCEEEeccHHHHHH
Confidence 7899998 999999989999999999999865421 1124577888999999999873 46788899999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccc
Q 003472 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (817)
Q Consensus 476 ~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (817)
.+++.+. .. .+.|.....+|+....++...|..
T Consensus 76 ~~~~~~~-----~~-----------------gd~Vl~~~~~~~~~~~~~~~~g~~------------------------- 108 (349)
T cd06454 76 GVLSTLA-----GK-----------------GDLIISDSLNHASIIDGIRLSGAK------------------------- 108 (349)
T ss_pred HHHHHhc-----CC-----------------CCEEEEehhhhHHHHHHHHHcCCc-------------------------
Confidence 8886551 11 123344556676544332222111
Q ss_pred cCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003472 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (817)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~ 635 (817)
.+.+| ..| .+.+++.+++. .++.+.++|+++++ +...|.
T Consensus 109 -----~~~~~--------------~~~------------------~~~le~~i~~~---~~~~~~~~v~~~~~-~~~tG~ 147 (349)
T cd06454 109 -----KRIFK--------------HND------------------MEDLEKLLREA---RRPYGKKLIVTEGV-YSMDGD 147 (349)
T ss_pred -----eEEec--------------CCC------------------HHHHHHHHHHh---hccCCCeEEEEecc-ccCCCC
Confidence 00001 001 13355555431 11356789999997 888888
Q ss_pred ccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc-hhhhcC---CCCcee--ecccccCCCCCcceEEEechHHHh
Q 003472 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLG---CVPDIA--CYGKLLTGGVIPLAATLATNAVFD 709 (817)
Q Consensus 636 ~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~-a~e~~g---v~PDiv--tlgK~LggGy~PlsAvl~s~~i~d 709 (817)
..+ +++|.++|+++|+++|+||++. +|..+..+ ....++ ..+|++ +++|.++. +.|.++.++++++
T Consensus 148 ~~~----~~~i~~~~~~~~~~livD~a~~-~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~---~gG~i~~~~~~~~ 219 (349)
T cd06454 148 IAP----LPELVDLAKKYGAILFVDEAHS-VGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA---VGGYIAGSKELID 219 (349)
T ss_pred ccC----HHHHHHHHHHcCCEEEEEcccc-ccccCCCCCChhhhccccccCcEEEeechhhhcc---cCCEEECCHHHHH
Confidence 766 8999999999999999999994 54443211 111222 245766 68999874 3356888888887
Q ss_pred hhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEE
Q 003472 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAI 789 (817)
Q Consensus 710 ~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gI 789 (817)
.+..... .+..+...++..++++.++|+.+++ .++..++...+.+++.+.+.+. ..+.+.. .+.++..
T Consensus 220 ~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~l~~~l~~~--g~~~~~~---~~~~~~~ 287 (349)
T cd06454 220 YLRSYAR----GFIFSTSLPPAVAAAALAALEVLQG---GPERRERLQENVRYLRRGLKEL--GFPVGGS---PSHIIPP 287 (349)
T ss_pred HHHHhch----hhhccCCCCHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhc--CCcccCC---CCCcEEE
Confidence 7643211 1234456789999999999998865 2344555555555555444322 2222221 1222222
Q ss_pred EEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 790 ELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 790 el~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+..+. .....+...++++||.
T Consensus 288 ~~~~~~-----~~~~~~~~~L~~~gI~ 309 (349)
T cd06454 288 LIGDDP-----AKAVAFSDALLERGIY 309 (349)
T ss_pred EeCCCh-----HHHHHHHHHHHhCCce
Confidence 222211 2446677788888874
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.8e-15 Score=167.17 Aligned_cols=306 Identities=12% Similarity=0.032 Sum_probs=184.0
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHhc-cccCC-----CCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHH
Q 003472 406 ASWWTQGPDATLQIELARDMGYTAARF-GHVMF-----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 406 sg~~~~~LGh~~hP~V~~Ai~~q~~~~-~~~~~-----~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alk 479 (817)
+++++...||+ +|++++++..|+ .. .++.. ..+..+...+++++|+++++.+ .+.+.|+++|+++++.+++
T Consensus 23 ~~l~~g~~~~~-~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~-~~~v~~~~~g~~~~~~~~~ 99 (398)
T cd00613 23 SFLGSGTYKHN-PPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTGMD-VANASLQDEATAAAEAAGL 99 (398)
T ss_pred ccccccccCCc-CcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCC-ccceeccCchHHHHHHHHH
Confidence 45667789999 999999988877 32 11111 1233456778999999988742 3378888888888899998
Q ss_pred HHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcc
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (817)
.+ +... ++.+.|.+...+||++..++.+.+... . . .+
T Consensus 100 ~~-~~~~------------------~~gd~Vl~~~~~h~~~~~~~~~~~~~~---g----------~-----------~~ 136 (398)
T cd00613 100 AA-IRAY------------------HKRNKVLVPDSAHPTNPAVARTRGEPL---G----------I-----------EV 136 (398)
T ss_pred HH-Hhcc------------------cCCCEEEEcCccCcchHHHHHHhcccC---C----------c-----------EE
Confidence 88 3221 123566678889999988877765321 0 0 00
Q ss_pred eeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp 639 (817)
..++.++.. ..| .+.+++.+. .++++|++++. . ..|.+
T Consensus 137 ~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~t~~viv~~~-~-~~G~~--- 174 (398)
T cd00613 137 VEVPSDEGG-----------TVD------------------LEALKEEVS--------EEVAALMVQYP-N-TLGVF--- 174 (398)
T ss_pred EEeccCCCC-----------CcC------------------HHHHHHhcC--------CCeEEEEEECC-C-CCcee---
Confidence 111111000 001 144555543 35889999996 5 56777
Q ss_pred HHHHHHHHHHHhhcCCcEEEeeeeec---cccccccchhhhcCCCCceee--cc---cccCCCCCcceEEE-echHHHhh
Q 003472 640 PLFQRILVKECQNRKIPVIFDEVFTG---FWRLGVETTADLLGCVPDIAC--YG---KLLTGGVIPLAATL-ATNAVFDS 710 (817)
Q Consensus 640 ~~yl~~Lr~Lc~~~GilLI~DEV~TG---fGRtG~~~a~e~~gv~PDivt--lg---K~LggGy~PlsAvl-~s~~i~d~ 710 (817)
.+++++|+++|++||+++|+|++|++ ++++|.+ .+|+++ ++ |++|+| .|.++++ +++++.+.
T Consensus 175 ~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~--------~~d~~~~s~~K~~~p~g~G-gp~~g~l~~~~~~~~~ 245 (398)
T cd00613 175 EDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEY--------GADIVVGNLQKTGVPHGGG-GPGAGFFAVKKELVRF 245 (398)
T ss_pred cchHHHHHHHHHhcCCEEEEEeccccccCCCChHHc--------CCCEEEeeccccCCCCCCC-CCceeEEEEhhhhHhh
Confidence 35789999999999999999999853 2233322 489886 33 555666 4655555 55677665
Q ss_pred hcCCC----------ccce-------------eecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHH
Q 003472 711 FVGDS----------KLKA-------------LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (817)
Q Consensus 711 ~~~~~----------~~~~-------------~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l 767 (817)
+.... .... ....+|++++++.++++.++++.+.+++ .+++.++...+++++.++|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g-~~~~~~~~~~~~~~l~~~L 324 (398)
T cd00613 246 LPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEG-LKEIAERAHLNANYLAKRL 324 (398)
T ss_pred CCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHH
Confidence 42110 0000 1235578899999999999999885533 2445566666777666655
Q ss_pred HHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 768 IQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 768 ~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+..... ...+.+... +.+.+... .+ .....+...++++||+
T Consensus 325 ~~~~~~~-~~~~~~~~~--v~~~~~~~---~~-~~~~~~~~~L~~~gi~ 366 (398)
T cd00613 325 KEVGGVL-PFNGPFFHE--FVLRLPPL---YG-IRAEDLAKALIDGGFH 366 (398)
T ss_pred HhcCCcc-cCCCCeeEE--EEEEcCCc---ch-HHHHHHHHhhhhcCcc
Confidence 4421111 122233322 23444321 00 2456677888888875
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.8e-14 Score=157.63 Aligned_cols=219 Identities=12% Similarity=0.031 Sum_probs=149.6
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccc
Q 003472 410 TQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH 489 (817)
Q Consensus 410 ~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~ 489 (817)
+++||.++||+|++|+.+++++++ +.++.+.+|+++|+++.+.+ .+.+++++||++||..++.... .
T Consensus 27 ~~ylgl~~~~~~~~~~~~~~~~~~------g~~~~~~~Le~~lA~~~g~~-~e~ilv~~gg~~a~~~~~~al~-----~- 93 (346)
T TIGR03576 27 YDLTGLAGGFKIDEEDLELLETYV------GPAIFEEKVQELGREHLGGP-EEKILVFNRTSSAILATILALE-----P- 93 (346)
T ss_pred cccccCCCChhHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHcCCC-cceEEEECCHHHHHHHHHHHhC-----C-
Confidence 458888889999999999999984 34688999999999998742 2689999999999999998761 1
Q ss_pred cccccccCCCccccccceEEEE--EcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCch
Q 003472 490 EVLVDFLGKDTTEKCIELKVLA--LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEW 567 (817)
Q Consensus 490 G~~~~~~~~~~~~~~~r~~II~--~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~ 567 (817)
++ ..|+. .+..+|.+...++.+.|...+
T Consensus 94 --------------~g-d~Vli~~~d~p~~~s~~~~~~l~ga~~~----------------------------------- 123 (346)
T TIGR03576 94 --------------PG-RKVVHYLPEKPAHPSIPRSCKLAGAEYF----------------------------------- 123 (346)
T ss_pred --------------CC-CEEEECCCCCCCchhHHHHHHHcCCEEe-----------------------------------
Confidence 11 24443 335677766555555432100
Q ss_pred hhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHH
Q 003472 568 LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647 (817)
Q Consensus 568 ~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr 647 (817)
.+++. +.++. . .+..+||+++ .++.|.+. +..-+++|.
T Consensus 124 -----------~~~~l------------------~~l~~-~---------~~~~lIiitg--~s~~G~v~-~~~~L~~i~ 161 (346)
T TIGR03576 124 -----------ESDEL------------------SELKK-I---------DGTSLVVITG--STMDLKVV-SEEDLKRVI 161 (346)
T ss_pred -----------ccCCH------------------HHHhh-C---------cCceEEEEEC--CCCCCccc-CHHHHHHHH
Confidence 01111 11211 1 1234677777 36677765 477799999
Q ss_pred HHHhhcCCcEEEeeeeecccccccc--chhhhcCCCCcee--ecccccCCCCCcceEEEechHHHhhhcCCCccceeecc
Q 003472 648 KECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHG 723 (817)
Q Consensus 648 ~Lc~~~GilLI~DEV~TGfGRtG~~--~a~e~~gv~PDiv--tlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~ 723 (817)
++|++||+++|+||++. .|..|.. +...+++ +|++ +++|+|+|. -+|.+++++++++.+.... ..
T Consensus 162 ~la~~~~~~livDEAy~-~~~~~~~~~~~~~~~~--~divv~s~SKalaG~--r~G~v~~~~~li~~l~~~~------~~ 230 (346)
T TIGR03576 162 KQAKSKEAIVLVDDASG-ARVRRLYGQPPALDLG--ADLVVTSTDKLMDGP--RGGLLAGRKELVDKIKSVG------EQ 230 (346)
T ss_pred HHHHHcCCEEEEECCcc-ccccccCCCCCHHHcC--CcEEEeccchhcccc--ceEEEEeCHHHHHHHHHhh------cC
Confidence 99999999999999994 4433321 1222333 5765 889998653 2567999999999886432 22
Q ss_pred cCCCCCHHHHHHHHHHHHHhc
Q 003472 724 HSYSAHALGCAAAAKSIKWFK 744 (817)
Q Consensus 724 ~T~~gnPla~AAAlA~L~~l~ 744 (817)
+.|+.+|.+++++.++|+.+.
T Consensus 231 ~~~s~~~~~~~aa~~aL~~~~ 251 (346)
T TIGR03576 231 FGLEAQAPLLAAVVRALEEFE 251 (346)
T ss_pred cccCccHHHHHHHHHHHhhcc
Confidence 334478889999999998754
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-13 Score=149.32 Aligned_cols=194 Identities=22% Similarity=0.249 Sum_probs=129.7
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccc--cCCCCCCcHHHHHHhCCCCccccCCCcccccc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ--TGYPHDSDSRFLFTKLPSLSLRRNFPSSLILS 113 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~--~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 113 (817)
+|++||+.+|++++|||.|++||+++|. ++|.+|+|||||. +|+..+.....+.+..
T Consensus 1 m~~~l~l~p~~~~~G~tsi~lgLl~~l~-----~k~~kva~~kPI~~~~~~~~~~~~e~~~~~~---------------- 59 (354)
T COG0857 1 MSRTLLLIPTETGVGKTSISLGLLRALE-----QKGLKVAYFKPIGTRTGKDADDLTEEDIRAT---------------- 59 (354)
T ss_pred CcceEEEeccCCCccHHHHHHHHHHHHH-----HcCceeEEEeccccccCCccchhHHHHHHHh----------------
Confidence 5789999999999999999999999994 8999999999997 4543333322222221
Q ss_pred cchhhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHhHhc-C-CC
Q 003472 114 NSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERES-G-GV 191 (817)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~-~-~~ 191 (817)
.-++.+.+ +..+ ..+..+.. + .+
T Consensus 60 ----------------~~~l~~~~---------------------------------~~~~------~~ae~L~~~~~~d 84 (354)
T COG0857 60 ----------------SSSLTYAE---------------------------------PLVL------SFAEVLLSTGQDD 84 (354)
T ss_pred ----------------hhhcccCc---------------------------------ccch------hhHHHHhccccch
Confidence 00011100 1122 12222210 1 12
Q ss_pred CChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCC----CCCchhhHhhhCCCCEEEEEcCCCChHHHH
Q 003472 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGP----SGSLQCDLYRPFRLPGILVGDGRLGGISGT 267 (817)
Q Consensus 192 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~----~~~~~~~la~~l~~pvilV~~~~~g~i~~~ 267 (817)
..+++|.+.|.+..+. +|++++|| ..|.- ....|+++|+.|+++++||++...-+..+.
T Consensus 85 ~l~e~i~~~y~e~~~~-------------~~~vv~~g----~~~~~~~~~~~~ln~~iA~~Lna~~vlva~~~~~~~~~~ 147 (354)
T COG0857 85 VLLEEILANYAELAKD-------------ADVVVVEG----DVPTREGPYALDLNYEIAKNLNAAAVLVARALLVTPYEL 147 (354)
T ss_pred HHHHHHHHHHHHHhcc-------------CceEEecc----ceeccccCccccccHHHHhhcCcchhhccccccCChhhh
Confidence 3456777777776644 89999999 44522 347899999999999999999887665554
Q ss_pred HH----HHHHHHhCCCcEEEEEEccCC----CCCHHHHHHhhcC-CCcEEe-cCCCCCCCcchhh
Q 003472 268 IS----AYESLKLRGYDVVAVVFEDHG----LVNEVPLMSYLRN-RVPVLV-LPPLPQDSSNDLM 322 (817)
Q Consensus 268 ~~----~~~~l~~~~~~v~gvi~n~~~----~~~~~~l~~~~~~-~~pvlg-iP~~~~~~~~~~~ 322 (817)
.. ....+...+.++.|||+|+.. ....+.+.+.+++ +..+++ +|...-+.+..+.
T Consensus 148 ~~~i~~~~~~~~~~~~~l~gVv~N~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ll~~~~v~ 212 (354)
T COG0857 148 KSRVELALAAFGAAGNNLAGVVINNAPVDEAGRTEDLLAEFLESSGIAVVGVLPPNRLLRSSPVR 212 (354)
T ss_pred hhHHHHHHHHhcccCCceEEEEecCCChhhhhhhhhHHHHHhhhccccccccCCHHHHhcCCcHH
Confidence 44 444444455589999999762 2234556666665 789999 8998888877665
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.7e-12 Score=137.59 Aligned_cols=178 Identities=15% Similarity=0.109 Sum_probs=118.4
Q ss_pred CCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch-hhhcC-CCCcee--ecccccC
Q 003472 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLG-CVPDIA--CYGKLLT 692 (817)
Q Consensus 617 ~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a-~e~~g-v~PDiv--tlgK~Lg 692 (817)
..++.+|++++. +...|.+. |.+.+++|.++|+++|+++|+||++++++..+.... ....+ ...|++ +++|.++
T Consensus 130 ~~~~~~v~i~~~-~~~tG~~~-~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~ 207 (350)
T cd00609 130 TPKTKLLYLNNP-NNPTGAVL-SEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFG 207 (350)
T ss_pred CccceEEEEECC-CCCCCccc-CHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccC
Confidence 357889999996 88888765 788999999999999999999999998876665431 01111 122444 7899999
Q ss_pred -CCCCcceEEEech-HHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHH
Q 003472 693 -GGVIPLAATLATN-AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (817)
Q Consensus 693 -gGy~PlsAvl~s~-~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~ 770 (817)
+| .++|++++++ ++.+.+... ....|+..++.+++++.+.|+..+ +..+++.+......+++. +.
T Consensus 208 ~~g-~~~G~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~----~~ 274 (350)
T cd00609 208 LPG-LRIGYLIAPPEELLERLKKL------LPYTTSGPSTLSQAAAAAALDDGE--EHLEELRERYRRRRDALL----EA 274 (350)
T ss_pred Ccc-cceEEEecCHHHHHHHHHHH------HHhcccCCChHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHH----HH
Confidence 77 7999999999 788887532 234467888888888888887663 122344444444444333 33
Q ss_pred HHcCCCcc-eEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCC
Q 003472 771 ISSHRTVQ-RVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGM 815 (817)
Q Consensus 771 l~~~p~V~-~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv 815 (817)
+++.+... .+...|.+..+.+... .....+.+.+.++||
T Consensus 275 L~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~~~~l~~~gi 314 (350)
T cd00609 275 LKELGPLVVVKPSGGFFLWLDLPEG------DDEEFLERLLLEAGV 314 (350)
T ss_pred HHhcCCccccCCCccEEEEEecCCC------ChHHHHHHHHHhCCE
Confidence 44444322 3445678888877543 223344555555575
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=135.48 Aligned_cols=243 Identities=12% Similarity=0.039 Sum_probs=171.5
Q ss_pred ceeeccccccccCCCCCC-CHHHHHHHHHHHHhccccCCC----CCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHH
Q 003472 400 QQFDACASWWTQGPDATL-QIELARDMGYTAARFGHVMFP----ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~-hP~V~~Ai~~q~~~~~~~~~~----~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~ 474 (817)
+.|.+.| =++||.++ +-..++++.+.++++++.... .++++.+.++++..+++++. +.++.+..|..+|
T Consensus 137 ~~lNlgS---YNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g~---e~a~vF~mGf~TN 210 (519)
T KOG1357|consen 137 RCLNLGS---YNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLGV---EDAIVFSMGFATN 210 (519)
T ss_pred eeeeecc---cccccccccCCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcCC---cceEEEecccccc
Confidence 3445444 34555421 556667777777887765311 24578999999999999985 5677778887777
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCccc
Q 003472 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (817)
Q Consensus 475 E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (817)
..-+... -++...|.-+.-.|++......++|....-
T Consensus 211 s~~~p~l----------------------~~~gsLIiSDelNHaSi~~GaRLSgAtiRV--------------------- 247 (519)
T KOG1357|consen 211 SMNIPSL----------------------LGKGSLIISDELNHASLITGARLSGATTRV--------------------- 247 (519)
T ss_pred ccCccee----------------------ecCCcceeeccccchheeccccccCceEEE---------------------
Confidence 6555444 234567888999999998888888653211
Q ss_pred ccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcC----CCC-CCCCcEEEEEEcccc
Q 003472 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN----PGL-KVSGCIGALIIEPVV 629 (817)
Q Consensus 555 ~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~----~~~-~~~~~iAAvIvEPV~ 629 (817)
..|||+ ..||+.|++. +.+ ..+.+.--||+|.+
T Consensus 248 -----------------------fkHNdm------------------~~LEr~Lrd~I~~gqP~Thrp~kki~iivegi- 285 (519)
T KOG1357|consen 248 -----------------------FRHNDM------------------QGLERLLRDAIVYGQPKTHRPWKKILICVEGI- 285 (519)
T ss_pred -----------------------EecCCH------------------HHHHHHHHHHHhcCCCCcCCcchheeeeeccc-
Confidence 127776 3445555442 111 23566779999998
Q ss_pred ccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeec--cccccccchhhhcCCCC---cee--ecccccC--CCCCcceE
Q 003472 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG--FWRLGVETTADLLGCVP---DIA--CYGKLLT--GGVIPLAA 700 (817)
Q Consensus 630 qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TG--fGRtG~~~a~e~~gv~P---Div--tlgK~Lg--gGy~PlsA 700 (817)
.++.|.+.- ++++.++|++|.+.|++||.|++ .|+|| .+.++++|+.| ||+ |+-|+.| |||
T Consensus 286 ysmEg~iv~----Lp~vvalkkkykayl~lDEAHSiGA~g~tG-rgvce~~g~d~~dvDImMGtftKSfga~GGy----- 355 (519)
T KOG1357|consen 286 YSMEGTIVD----LPEVVALKKKYKAYLYLDEAHSIGAMGATG-RGVCEYFGVDPEDVDIMMGTFTKSFGAAGGY----- 355 (519)
T ss_pred eeccCeecc----cHHHHHhhccccEEEEeeccccccccCCCC-cceeeccCCCchhheeecceehhhcccccce-----
Confidence 899998887 89999999999999999999973 34555 55788999876 665 8899887 466
Q ss_pred EEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcC
Q 003472 701 TLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ 747 (817)
Q Consensus 701 vl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~ 747 (817)
+.+++++.+.+..... .+-+...-.|..+...+..+++|..++
T Consensus 356 iagsk~lid~lrt~s~----~~~yat~~sppvaqq~~ssl~~i~G~d 398 (519)
T KOG1357|consen 356 IAGSKELIDYLRTPSP----SALYATSLSPPVAQQILTSVKHIMGED 398 (519)
T ss_pred ecCcHHHHhhhccCCC----ceeecccCChHHHHHHHHHHHhhcCCC
Confidence 8999999999865421 233333457888888999999997543
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-10 Score=131.09 Aligned_cols=301 Identities=12% Similarity=0.104 Sum_probs=175.9
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alk 479 (817)
.+||+..+ ...++ - +|.+.+|+.+++........ ....-..+|.+.++++++-. .+.+++++++++|+..+++
T Consensus 29 ~~i~l~~~--~~~~~-~-~~~~~~a~~~~~~~~~~~~y--~~~~g~~~lr~~ia~~l~~~-~~~v~~~~g~t~al~~~~~ 101 (380)
T PRK06225 29 EMIWMGQN--TNHLG-P-HEEVREAMIRCIEEGEYCKY--PPPEGFPELRELILKDLGLD-DDEALITAGATESLYLVMR 101 (380)
T ss_pred CeEEccCC--CCCCC-C-CHHHHHHHHHHHhcCCCCCC--CCCcchHHHHHHHHHhcCCC-CCcEEEeCCHHHHHHHHHH
Confidence 56777653 23344 3 79999999998875322111 11122456778888876643 3579999999999999988
Q ss_pred HHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcc
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (817)
... . + ...|+..+.+|+... ..+...|..
T Consensus 102 ~~~-----~---------------~-gd~vl~~~p~y~~~~-~~~~~~g~~----------------------------- 130 (380)
T PRK06225 102 AFL-----S---------------P-GDNAVTPDPGYLIID-NFASRFGAE----------------------------- 130 (380)
T ss_pred Hhc-----C---------------C-CCEEEEcCCCCcchH-HHHHHhCce-----------------------------
Confidence 761 1 1 135777777776421 111111111
Q ss_pred eeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp 639 (817)
.+++|-. ++.+ -+. -| .+.+++.+. ...-+.+++.| +.-.|... +
T Consensus 131 -~~~v~~~-------------~~~~-~~~--~d--------~~~l~~~~~-------~~~~~v~l~~p--~NptG~~~-~ 175 (380)
T PRK06225 131 -VIEVPIY-------------SEEC-NYK--LT--------PELVKENMD-------ENTRLIYLIDP--LNPLGSSY-T 175 (380)
T ss_pred -EEeeccc-------------cccC-Ccc--CC--------HHHHHhhcC-------CCceEEEEeCC--CCCCCcCC-C
Confidence 0111100 0000 000 00 134554443 12223445677 34556655 7
Q ss_pred HHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCc----eeecccccC-CCCCcceEEEechHHHhhhcCC
Q 003472 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD----IACYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (817)
Q Consensus 640 ~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PD----ivtlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~ 714 (817)
.+.+++|.++|+++|+++|+||++..|. .+..... .+.|| +.+++|.+| .| +.+|++++++++++.+...
T Consensus 176 ~~~~~~i~~~a~~~~~~ii~De~y~~~~-~~~~~~~---~~~~~~~i~~~s~SK~~g~~G-~RiG~i~~~~~l~~~~~~~ 250 (380)
T PRK06225 176 EEEIKEFAEIARDNDAFLLHDCTYRDFA-REHTLAA---EYAPEHTVTSYSFSKIFGMAG-LRIGAVVATPDLIEVVKSI 250 (380)
T ss_pred HHHHHHHHHHHHHCCcEEEEehhHHHHh-ccCCchh---hcCCCCEEEEeechhhcCCcc-ceeEEEecCHHHHHHHHHH
Confidence 7889999999999999999999997663 2222111 22333 568999998 68 7999999999999887431
Q ss_pred CccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC--cceEEeeeeEEEEEEe
Q 003472 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT--VQRVVALGTLCAIELQ 792 (817)
Q Consensus 715 ~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~--V~~VrG~Glm~gIel~ 792 (817)
...+++.|.++++++.++|+.. ++..+++.+..+...+ .+.+.+++.+. +..+...|.++.+++.
T Consensus 251 -------~~~~~~~~~~~~~~a~~~l~~~--~~~~~~~~~~~~~~~~----~l~~~L~~~~~~~~~~~~~~g~~~~~~~~ 317 (380)
T PRK06225 251 -------VINDLGTNVIAQEAAIAGLKVK--DEWIDRIRRTTFKNQK----LIKEAVDEIEGVFLPVYPSHGNMMVIDIS 317 (380)
T ss_pred -------HhcccCCCHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHH----HHHHHHHhCcCCccccCCCCCeEEEEEcc
Confidence 2356788999998888887642 2222333332222222 33444554432 2223456778888886
Q ss_pred cCCCCCCcchHHHHHHHHHHcCCC
Q 003472 793 AAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
... .....+...+.++||.
T Consensus 318 ~~~-----~~~~~l~~~l~~~gi~ 336 (380)
T PRK06225 318 EAG-----IDPEDLVEYLLERKIF 336 (380)
T ss_pred ccc-----CCHHHHHHHHHHCCEE
Confidence 432 2345677777788873
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.3e-11 Score=131.30 Aligned_cols=293 Identities=14% Similarity=0.046 Sum_probs=160.8
Q ss_pred CCCCCHHHHHHHHHHHHhccccC-CCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhcccccc
Q 003472 414 DATLQIELARDMGYTAARFGHVM-FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVL 492 (817)
Q Consensus 414 Gh~~hP~V~~Ai~~q~~~~~~~~-~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~ 492 (817)
-|. ||.+++|+.+++....... ..........++.+.|+++++.+ -..++|+++|++||+.|++.+ +....+
T Consensus 30 ~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~~~~~ggt~a~~~a~~~~-~~~~~~---- 102 (371)
T PRK13520 30 TEP-HPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLP-DAYGYITSGGTEANIQAVRAA-RNLAKA---- 102 (371)
T ss_pred cCc-hHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCC-CCCeEEecCcHHHHHHHHHHH-HhhccC----
Confidence 466 9999999999887632221 11122344468889999988743 235789999999999999998 332111
Q ss_pred ccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcc
Q 003472 493 VDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (817)
Q Consensus 493 ~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~ 572 (817)
.+.+||..+.++.. ...+....|.. +..++.+...
T Consensus 103 ------------~~~~vl~~~~~h~s-~~~~~~~~g~~----------------------------~~~v~~~~~~---- 137 (371)
T PRK13520 103 ------------EKPNIVVPESAHFS-FDKAADMLGVE----------------------------LRRAPLDDDY---- 137 (371)
T ss_pred ------------CCceEEecCcchHH-HHHHHHHcCce----------------------------EEEecCCCCC----
Confidence 12367776655432 21111111110 1112211100
Q ss_pred cccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhh
Q 003472 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN 652 (817)
Q Consensus 573 ~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~ 652 (817)
..| .+.|++.+.+ +....+++.+ ....|.+.| +++|.++|++
T Consensus 138 -------~~d------------------~~~l~~~i~~-------~~~~vi~~~~--~~~tG~~~~----l~~I~~l~~~ 179 (371)
T PRK13520 138 -------RVD------------------VKAVEDLIDD-------NTIGIVGIAG--TTELGQVDP----IPELSKIALE 179 (371)
T ss_pred -------cCC------------------HHHHHHHHhh-------CCEEEEEEcC--CcCCcccCC----HHHHHHHHHH
Confidence 011 2566777652 2223334444 245688876 9999999999
Q ss_pred cCCcEEEeeeeeccc----cccccchhhhcCCCCceeec--ccccCCCCCcceEEEec-hHHHhhhcCCCcc----ceee
Q 003472 653 RKIPVIFDEVFTGFW----RLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLAT-NAVFDSFVGDSKL----KALL 721 (817)
Q Consensus 653 ~GilLI~DEV~TGfG----RtG~~~a~e~~gv~PDivtl--gK~LggGy~PlsAvl~s-~~i~d~~~~~~~~----~~~~ 721 (817)
+|+++++||+|+|+. +.+..+..... ..|.+++ -|-+.+| .|+|+++++ +++.+.+...... ..+.
T Consensus 180 ~g~~livD~a~~~~~~~~~~~~~~~~~~~~--~vd~~~~s~~K~~~a~-~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~ 256 (371)
T PRK13520 180 NGIFLHVDAAFGGFVIPFLDDPPNFDFSLP--GVDSITIDPHKMGLAP-IPAGGILFRDESYLDALAVDTPYLTSKKQAT 256 (371)
T ss_pred cCCCEEEEecchhHHHHhhcCCCCccccCC--CCceEEECCccccCcc-CCceEEEEcCHHHHHhhcccCccccCCCCcc
Confidence 999999999997652 21111222222 2465543 3543445 789888864 4466665321100 0111
Q ss_pred cccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC-CcceEEeeeeEEEEEEecCCCCCCc
Q 003472 722 HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR-TVQRVVALGTLCAIELQAAGCNAGY 800 (817)
Q Consensus 722 h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p-~V~~VrG~Glm~gIel~~~~~~~~~ 800 (817)
+.+|.. +..++++.++|+.+.++++ ++..++...+.++|.+.+.+. ... .+..+ .-++.+.+.+
T Consensus 257 ~~gt~~--~~~~~~~~~al~~l~~~g~-~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~---~~~v~~~~~~------- 321 (371)
T PRK13520 257 LTGTRS--GAGVAATYAVMKYLGREGY-RKVVERCMENTRWLAEELKER--GFEPVIEPV---LNIVAFDDPN------- 321 (371)
T ss_pred eEeecc--ChHHHHHHHHHhhhcHhHH-HHHHHHHHHHHHHHHHHHHhC--CCEEecCCC---ceEEEEecCC-------
Confidence 223333 3458888889998866443 445555666666555544332 222 12222 2355565531
Q ss_pred chHHHHHHHHHHcCCC
Q 003472 801 CLIELFLYNFLTTGMH 816 (817)
Q Consensus 801 ~~~~~~~~~~l~~Gv~ 816 (817)
...+...+.++||.
T Consensus 322 --~~~v~~~L~~~gi~ 335 (371)
T PRK13520 322 --PDEVREKLRERGWR 335 (371)
T ss_pred --HHHHHHHHHHCCce
Confidence 24566677777763
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.7e-11 Score=131.60 Aligned_cols=163 Identities=17% Similarity=0.170 Sum_probs=109.5
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCCc
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIP 697 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~P 697 (817)
.++..| +.--|.+.+ .++++++|+.+++++|+||++++|++.|.....+..+..|+++ +|||++| .| ++
T Consensus 164 i~l~~p--~NPtG~~~~----~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~G-lR 236 (368)
T PRK03317 164 VFLTSP--NNPTGTALP----LDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAG-GR 236 (368)
T ss_pred EEEeCC--CCCCCCCCC----HHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccch-hh
Confidence 345555 566777776 7788888888899999999999998777666666666678887 8999998 68 79
Q ss_pred ceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 003472 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (817)
Q Consensus 698 lsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V 777 (817)
+|++++++++++.+... ..+|..++++++++.++|+..+ .+.++.+++.+ .++.+.+.+++++.
T Consensus 237 iG~~~~~~~~~~~l~~~--------~~~~~~s~~~~~a~~~~l~~~~------~~~~~~~~~~~-~~~~l~~~L~~~g~- 300 (368)
T PRK03317 237 LGYLAAAPAVVDALRLV--------RLPYHLSAVTQAAARAALRHAD------ELLASVAALRA-ERDRVVAWLRELGL- 300 (368)
T ss_pred hhhhhCCHHHHHHHHhc--------CCCCCCCHHHHHHHHHHhhCHH------HHHHHHHHHHH-HHHHHHHHHHHCCC-
Confidence 99999999999988532 2467889999999988886432 22222223322 12234445555442
Q ss_pred ceEEeeeeEEEE-EEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 778 QRVVALGTLCAI-ELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 778 ~~VrG~Glm~gI-el~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.-....|.++-+ ++. ....+...++++||+
T Consensus 301 ~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~Gv~ 331 (368)
T PRK03317 301 RVAPSDANFVLFGRFA---------DRHAVWQGLLDRGVL 331 (368)
T ss_pred EeCCCCCcEEEEeccC---------CHHHHHHHHHHCCEE
Confidence 112233444322 221 235677888899974
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-10 Score=131.81 Aligned_cols=244 Identities=11% Similarity=0.032 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHH-HhccccC----CCCCCChHHHHHHH----HHHhhcCCCCcceEE-EeCChHHHHHHHHHHHHHHhhc
Q 003472 418 QIELARDMGYTA-ARFGHVM----FPENVYEPALECAE----LLLQGVGKGWASRAY-FSDNGSTAIEIALKMAFRKFSF 487 (817)
Q Consensus 418 hP~V~~Ai~~q~-~~~~~~~----~~~~~~~~~~eLae----~L~~~~~~~~~~~v~-f~~SGseA~E~AlklA~r~~t~ 487 (817)
||++.+|+...+ .+++... ..++ ++...+|++ +++++++. +.++ +++||+.||.+++.... +
T Consensus 41 ~p~v~~a~~~~~~~~~~~g~~gsr~~~G-~~~~~~lE~~~~~~la~l~g~---~~alv~~~SG~~A~~~~l~al~----~ 112 (416)
T PRK13034 41 SPAVMEAQGSVLTNKYAEGYPGKRYYGG-CEFVDEVEALAIERAKQLFGC---DYANVQPHSGSQANGAVYLALL----K 112 (416)
T ss_pred CHHHHHHhcchhhcCCCCCCCCCcccCC-ChHHHHHHHHHHHHHHHHhCC---CceEEecCCcHHHHHHHHHHhc----C
Confidence 899999999995 8876532 1122 588889998 99999984 5674 57999999999988761 1
Q ss_pred cccccccccCCCccccccceEEEEEcCCccCCc-cccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCc
Q 003472 488 DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT-LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566 (817)
Q Consensus 488 ~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t-~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~ 566 (817)
+| ..|++-+. -||++ ..+...+.. . .++.. .+++. .+.
T Consensus 113 -~G----------------D~Vl~~~~-~~~~~~~~g~~~~~~----~----~~~~~--~~~~~-------------~~~ 151 (416)
T PRK13034 113 -PG----------------DTILGMSL-SHGGHLTHGAKVSLS----G----KWYNA--VQYGV-------------DRL 151 (416)
T ss_pred -CC----------------CEEEEcCc-cceeeeecCCcceec----c----ceeee--EEccc-------------ccc
Confidence 11 24555444 45432 211111100 0 00000 00000 000
Q ss_pred hhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCcccCCHHHHHH
Q 003472 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRI 645 (817)
Q Consensus 567 ~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIv-EPV~qg~gG~~~pp~~yl~~ 645 (817)
. ..+|+ +.+++.++. .+..+|++ +++ .| +..+ +++
T Consensus 152 ~-----------~~~d~------------------~~le~~l~~-------~~~klVi~~~~~-~g---~~~d----l~~ 187 (416)
T PRK13034 152 T-----------GLIDY------------------DEVEELAKE-------HKPKLIIAGFSA-YP---RELD----FAR 187 (416)
T ss_pred c-----------CCcCH------------------HHHHHHHhh-------cCCeEEEECCCc-cc---cccC----HHH
Confidence 0 01221 445666642 12356777 675 44 3333 889
Q ss_pred HHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCCCCCcceEEEechHHHhhhcCCCccceeecc
Q 003472 646 LVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHG 723 (817)
Q Consensus 646 Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~ 723 (817)
|.++|++||++||+|+.| ++|-+|.......++ ..|++ +++|.|+|+. -|+++++++.+....... ..++
T Consensus 188 l~~la~~~g~~livD~Ah-a~G~~~~g~~~~~~~-~~Di~~~s~~K~l~g~~--GG~v~~~~~~~~~~~~~~----~~~~ 259 (416)
T PRK13034 188 FREIADEVGALLMVDMAH-IAGLVAAGEHPNPFP-HAHVVTTTTHKTLRGPR--GGMILTNDEEIAKKINSA----VFPG 259 (416)
T ss_pred HHHHHHHcCCEEEEeCcc-cccCcccCCCCCCCC-CceEEEEeCcccCCCCC--CeEEEECcHHHHHHHHhh----cCCc
Confidence 999999999999999999 577766532111112 36876 6689996542 355666554433321110 1122
Q ss_pred cCCCCCH-HHHHHHHHHHHHhcC--cCchhcHHHHHHHHHHH
Q 003472 724 HSYSAHA-LGCAAAAKSIKWFKD--PQTNHNIIPERRILREL 762 (817)
Q Consensus 724 ~T~~gnP-la~AAAlA~L~~l~~--~~l~~~l~~~~~~lg~~ 762 (817)
.+-+.+| ..++++++.++.++. +++.+++.++++++.+.
T Consensus 260 ~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~ 301 (416)
T PRK13034 260 LQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEV 301 (416)
T ss_pred ccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHH
Confidence 1112233 444445566666532 22356666666666553
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.29 E-value=8e-11 Score=132.81 Aligned_cols=236 Identities=15% Similarity=0.107 Sum_probs=143.6
Q ss_pred CCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccC
Q 003472 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (817)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG 518 (817)
.+.++...+|+++|+++.+ .+.+++++||++|+..+++... . ++ .+||. ...+||
T Consensus 50 r~~~p~~~~le~~la~l~g---~~~~~~~~sG~~Ai~~al~al~-----~---------------~G-d~Vl~-~~~~~~ 104 (380)
T TIGR01325 50 RYANPTVAAFEERIAALEG---AERAVATATGMSAIQAALMTLL-----Q---------------AG-DHVVA-SRSLFG 104 (380)
T ss_pred cCCCchHHHHHHHHHHHhC---CCcEEEECCHHHHHHHHHHHHh-----C---------------CC-CEEEE-ecCCcc
Confidence 3456778899999999887 3678999999999999997551 1 11 24555 455666
Q ss_pred CccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHH
Q 003472 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (817)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~ 598 (817)
.+...+.-. . ...|. .+..++ .+|
T Consensus 105 ~t~~~~~~~-----~--------~~~g~-----------~v~~v~----------------~~d---------------- 128 (380)
T TIGR01325 105 STVGFISEI-----L--------PRFGI-----------EVSFVD----------------PTD---------------- 128 (380)
T ss_pred hHHHHHHHH-----H--------HHhCC-----------EEEEEC----------------CCC----------------
Confidence 654322110 0 00000 000111 111
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhc
Q 003472 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (817)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~ 678 (817)
.+.+++.++ .++.+|++|.. ....|.+.+ +++|.++|+++|+++|+||+++.+ -.. .-.
T Consensus 129 --~~~l~~~i~--------~~tklV~le~p-~np~g~~~d----l~~I~~la~~~gi~livD~a~~~~-~~~-----~pl 187 (380)
T TIGR01325 129 --LNAWEAAVK--------PNTKLVFVETP-SNPLGELVD----IAALAELAHAIGALLVVDNVFATP-VLQ-----QPL 187 (380)
T ss_pred --HHHHHHhcC--------CCceEEEEECC-CCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccc-ccC-----Cch
Confidence 134555443 24679999986 666677765 899999999999999999998522 111 122
Q ss_pred CCCCceee--cccccCC-CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHH
Q 003472 679 GCVPDIAC--YGKLLTG-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (817)
Q Consensus 679 gv~PDivt--lgK~Lgg-Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~ 755 (817)
...+|+++ ++|.++| |....|++++++++++.+.... ..++. ..+|..++.++..++.+.. ..++..++
T Consensus 188 ~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~----~~~g~--~~~p~~a~~~l~~l~tl~~--r~~~~~~~ 259 (380)
T TIGR01325 188 KLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYL----RHTGP--AMSPFNAWVLLKGLETLSL--RMQKQFDS 259 (380)
T ss_pred hhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHH----HhhCC--CCCHHHHHHHHhccCcHHH--HHHHHHHH
Confidence 34579885 8999987 4333467778888877664210 01222 2456777777777666643 23445555
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcce------------------EEeeeeEEEEEEe
Q 003472 756 RRILRELWDLELIQQISSHRTVQR------------------VVALGTLCAIELQ 792 (817)
Q Consensus 756 ~~~lg~~l~~~l~~~l~~~p~V~~------------------VrG~Glm~gIel~ 792 (817)
+..+.++| +++|.|.. -.|-|.|+.|+|.
T Consensus 260 a~~la~~L--------~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~ 306 (380)
T TIGR01325 260 ALAIAEWL--------QAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA 306 (380)
T ss_pred HHHHHHHH--------HcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC
Confidence 55555433 33443222 2477999999997
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.1e-11 Score=132.66 Aligned_cols=236 Identities=14% Similarity=0.056 Sum_probs=149.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.+. +.+++++||++|+..+++... .. ...|+.....||+.
T Consensus 37 ~~~p~~~~le~~la~l~g~---~~a~~~~sG~~Ai~~~l~~l~-----~~----------------gd~Vl~~~~~y~~~ 92 (369)
T cd00614 37 IGNPTVDALEKKLAALEGG---EAALAFSSGMAAISTVLLALL-----KA----------------GDHVVASDDLYGGT 92 (369)
T ss_pred CCChhHHHHHHHHHHHHCC---CCEEEEcCHHHHHHHHHHHHc-----CC----------------CCEEEECCCCcchH
Confidence 4578889999999999873 678999999999999998762 11 13577777777663
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
. ..+... ... .|.- +..++ .+|
T Consensus 93 ~-~~~~~~-~~~------------~g~~-----------~~~v~----------------~~d----------------- 114 (369)
T cd00614 93 Y-RLFERL-LPK------------LGIE-----------VTFVD----------------PDD----------------- 114 (369)
T ss_pred H-HHHHHH-Hhh------------cCeE-----------EEEeC----------------CCC-----------------
Confidence 2 211100 000 0000 00000 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.++ .++.+|++|.+ +...|.+.+ +++|.++|++||+++|+||++. .+.. ...+.
T Consensus 115 -~~~l~~~i~--------~~~~~v~~e~~-~np~g~~~d----l~~i~~la~~~g~~livD~t~~-~~~~-----~~~~~ 174 (369)
T cd00614 115 -PEALEAAIK--------PETKLVYVESP-TNPTLKVVD----IEAIAELAHEHGALLVVDNTFA-TPYL-----QRPLE 174 (369)
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-chhc-----CChhh
Confidence 144555553 25678999997 788888876 8999999999999999999984 3222 12223
Q ss_pred CCCcee--ecccccCC-CCCcceEEEech-HHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHH
Q 003472 680 CVPDIA--CYGKLLTG-GVIPLAATLATN-AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (817)
Q Consensus 680 v~PDiv--tlgK~Lgg-Gy~PlsAvl~s~-~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~ 755 (817)
..+|++ +++|.++| |-...|++++++ ++++.+.... ...++..+|..+++++..|+.+.. ..++..++
T Consensus 175 ~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~------~~~g~~~~p~~a~~~l~~l~tl~~--r~~~~~~n 246 (369)
T cd00614 175 LGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLR------LALGTILSPFDAWLLLRGLKTLPL--RMERHSEN 246 (369)
T ss_pred hCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHH------HhhCCCCCHHHHHHHHcCCCCHHH--HHHHHHHH
Confidence 357887 78999986 325678888877 7777664321 113345678888887666654421 23455555
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcceE------------------EeeeeEEEEEEec
Q 003472 756 RRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (817)
Q Consensus 756 ~~~lg~~l~~~l~~~l~~~p~V~~V------------------rG~Glm~gIel~~ 793 (817)
+.++.+ .++++|.|..| .|.|.|+.|++..
T Consensus 247 a~~la~--------~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~ 294 (369)
T cd00614 247 ALKVAE--------FLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKG 294 (369)
T ss_pred HHHHHH--------HHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCC
Confidence 555544 33444543333 4679999999963
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.6e-10 Score=126.85 Aligned_cols=240 Identities=13% Similarity=0.046 Sum_probs=145.0
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcccc-----CCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHh
Q 003472 411 QGPDATLQIELARDMGYTAARFGHV-----MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF 485 (817)
Q Consensus 411 ~~LGh~~hP~V~~Ai~~q~~~~~~~-----~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~ 485 (817)
.-+|.- .+++++|+.+....++.. .......+...++.++++++++. +.++|+++|++|+..|++...
T Consensus 27 ~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~---~~~~~~~g~t~a~~~al~~l~--- 99 (387)
T PRK09331 27 QRGGIL-TPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGM---DEARVTHGAREGKFAVMHSLC--- 99 (387)
T ss_pred hcCCCC-CHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHhc---
Confidence 357888 999999999887544321 11122356788999999999983 678999999999999988762
Q ss_pred hccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCC
Q 003472 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP 565 (817)
Q Consensus 486 t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P 565 (817)
.+ ..+|++- ...|-+...++...|... ..++.+
T Consensus 100 --~~----------------gd~Vlv~-~~~h~s~~~~~~~~G~~~----------------------------~~v~~~ 132 (387)
T PRK09331 100 --KK----------------GDYVVLD-GLAHYTSYVAAERAGLNV----------------------------REVPKT 132 (387)
T ss_pred --CC----------------CCEEEEC-CCchHHHHHHHHHcCCEE----------------------------EEEeCc
Confidence 11 1245554 444544444333332110 011110
Q ss_pred --chhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHH
Q 003472 566 --EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQ 643 (817)
Q Consensus 566 --~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl 643 (817)
..+ ..| .+.+++.+++.. .....++.+|+++-+ .+..|...+ +
T Consensus 133 ~~~~~-----------~~d------------------~~~l~~~l~~~~-~~~~~~~~lV~l~~~-~~~tG~~~~----l 177 (387)
T PRK09331 133 GYPEY-----------KIT------------------PEAYAEKIEEVK-EETGKPPALALLTHV-DGNYGNLAD----A 177 (387)
T ss_pred cCcCC-----------CcC------------------HHHHHHHHHHhh-hccCCCCEEEEEECC-CCCCccccc----H
Confidence 000 011 144555554210 011235778888876 677787776 9
Q ss_pred HHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccce----
Q 003472 644 RILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKA---- 719 (817)
Q Consensus 644 ~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~---- 719 (817)
++|.++|++||+++|+||+|+ +|..+.- ...+|+.-.+.++.|.++++ .++|.+++++++++.+....+...
T Consensus 178 ~~I~~la~~~g~~livD~a~~-~g~~~~~--~~~~g~D~~~~s~~K~l~~~-~~~G~l~~~~~~i~~~~~~~~~~~~~~~ 253 (387)
T PRK09331 178 KKVAKVAHEYGIPFLLNGAYT-VGRMPVD--GKKLGADFIVGSGHKSMAAS-APSGVLATTEEYADKVFRTSRKFGVKEV 253 (387)
T ss_pred HHHHHHHHHcCCEEEEECCcc-cCCcCCC--HHHcCCCEEEeeCcccccCC-CCEEEEEECHHHHhhcccccCCCcccce
Confidence 999999999999999999994 5443321 22344433334789999977 689999999998887644221000
Q ss_pred eecccCCCCCHHHHHHHHHHHHHhcC
Q 003472 720 LLHGHSYSAHALGCAAAAKSIKWFKD 745 (817)
Q Consensus 720 ~~h~~T~~gnPla~AAAlA~L~~l~~ 745 (817)
-..++| -.+...++++++++.+.+
T Consensus 254 ~~~~~~--~~~~~~~~~~aal~~~~~ 277 (387)
T PRK09331 254 ELLGCT--LRGAPLVTLMASFPHVVE 277 (387)
T ss_pred eeecee--cCchHHHHHHHHHHHHHH
Confidence 011222 234455666677776643
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.8e-10 Score=127.88 Aligned_cols=201 Identities=12% Similarity=0.041 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHhccccCC---------CCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhcccc
Q 003472 420 ELARDMGYTAARFGHVMF---------PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (817)
Q Consensus 420 ~V~~Ai~~q~~~~~~~~~---------~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G 490 (817)
.+.+|+.+++++++.... ....++...++.+.|+++.+ .+.+.++++|++|+..++.... ..
T Consensus 19 ~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g---~~~~~i~~g~~~a~~~~~~~l~-----~~- 89 (370)
T TIGR02539 19 VLTEAARKALVEFGDGYSVCDFCGGRLDQITKPPIHDFLEDLAEFLG---MDEARVTHGAREGKFAVMHALC-----KE- 89 (370)
T ss_pred CCcHHHHHHHHHHhhccccccccccccccccchHHHHHHHHHHHHhC---CCceEEECChHHHHHHHHHHhh-----CC-
Confidence 455666666666654221 11224567788888999988 4678889999999999887661 11
Q ss_pred ccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCC--chh
Q 003472 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP--EWL 568 (817)
Q Consensus 491 ~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P--~~~ 568 (817)
..+|++ +..-|.+.+.++...|.... .++.. ..+
T Consensus 90 ---------------gd~Vl~-~~~~h~s~~~~~~~~g~~~~----------------------------~~~~~~~~~~ 125 (370)
T TIGR02539 90 ---------------GDWVVL-DGLAHYTSYVAAERAGLNVK----------------------------EVPHTGHPEY 125 (370)
T ss_pred ---------------CCEEEE-CCcccHHHHHHHHHcCCEEE----------------------------EEecCCcccC
Confidence 124544 44455444444333332110 01100 000
Q ss_pred hhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHH
Q 003472 569 YSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVK 648 (817)
Q Consensus 569 ~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~ 648 (817)
-.| .+.+++.+++.. .....+..+|+++-+ .+.-|.+.+ +++|.+
T Consensus 126 -----------~~d------------------~~~l~~~l~~~~-~~~~~~~~lv~~~~p-~~~~G~~~~----l~~i~~ 170 (370)
T TIGR02539 126 -----------KVD------------------PEGYGEVIEEVE-DESGKPPVLALLTHV-DGEYGNLPD----AGKVAK 170 (370)
T ss_pred -----------CcC------------------HHHHHHHHHHhh-hccCCCcEEEEEECC-CCCCccccC----HHHHHH
Confidence 011 244555554210 001124556776654 566788776 899999
Q ss_pred HHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCCCCCcceEEEechHHHhhhcCC
Q 003472 649 ECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGD 714 (817)
Q Consensus 649 Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~LggGy~PlsAvl~s~~i~d~~~~~ 714 (817)
+|++||+++|+||+|. +|..+.-. ....+|++ +++|++++| .++|.+++++++++.+...
T Consensus 171 la~~~~~~livDea~~-~g~~~~~~----~~~~~di~v~s~sK~~~~~-g~~G~l~~~~~~i~~l~~~ 232 (370)
T TIGR02539 171 VCREKGVPLLLNCAYT-VGRMPVSA----KEIGADFIVGSGHKSMAAS-GPCGVLGMSEEWEDIVLRK 232 (370)
T ss_pred HHHHcCCeEEEECccc-cCCcCCCH----HHcCCCEEEeeCcccccCC-CCEEEEEECHHHHhhhccc
Confidence 9999999999999995 55433221 12246865 899999976 6899999999999988653
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.8e-09 Score=118.04 Aligned_cols=216 Identities=13% Similarity=0.033 Sum_probs=126.5
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alk 479 (817)
+++|+.++.+. .. +|.+.+|+++. +..... .+..+...+|.+.|+++++. +.+++++||++++..++.
T Consensus 6 ~~~~~~~~~~~----~~-~~~~~~a~~~~--~~~~~~--~~~~~~~~~l~~~la~~~~~---~~~~~~~~Gs~a~~~~l~ 73 (353)
T PLN02721 6 RVVDLRSDTVT----KP-TDAMRAAMANA--EVDDDV--LGYDPTALRLEEEMAKIFGK---EAALFVPSGTMGNLISVL 73 (353)
T ss_pred hhhhhhccccc----CC-CHHHHHHHHhc--cCCCcc--cCCCHHHHHHHHHHHHHhCC---ceeEEecCccHHHHHHHH
Confidence 67888886665 35 89999998764 111111 12356678999999999983 568899999999988877
Q ss_pred HHHHHhhccccccccccCCCccccccceEEEEEcCCccCCcc-c-cccccCCCCCCCcCCCCCccCCccccCCCcccccC
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL-G-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~-g-alslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (817)
... ... ...|+..+.+|..... + .....|..
T Consensus 74 ~~~----~~~----------------gd~Vl~~~~~~~~~~~~~~~~~~~g~~--------------------------- 106 (353)
T PLN02721 74 VHC----DVR----------------GSEVILGDNSHIHLYENGGISTLGGVH--------------------------- 106 (353)
T ss_pred HHc----cCC----------------CCeEEEcCccceehhcccchhhhcCce---------------------------
Confidence 651 101 1356666655422111 0 00111100
Q ss_pred cceeecCCchhhhcccccccccc-cCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcc
Q 003472 558 SKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (817)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~d~~~-~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~ 636 (817)
+..++.... + .| .+.+++.+++.. ..+..+..+|+++++ +...|-.
T Consensus 107 -~~~v~~~~~------------~~~d------------------~~~l~~~i~~~~-~~~~~~~~~v~l~~~-~~np~G~ 153 (353)
T PLN02721 107 -PRTVKNNED------------GTMD------------------LDAIEAAIRPKG-DDHFPTTRLICLENT-HANCGGR 153 (353)
T ss_pred -eEecCCCcC------------CCcC------------------HHHHHHHHHhcc-CCCCCcceEEEEecc-ccccCCc
Confidence 000110000 0 01 245666665310 012246789999997 6664444
Q ss_pred cCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc-hhhhcCCCCc--eeecccccCCCCCcceE-EEechHHHhhh
Q 003472 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD--IACYGKLLTGGVIPLAA-TLATNAVFDSF 711 (817)
Q Consensus 637 ~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~-a~e~~gv~PD--ivtlgK~LggGy~PlsA-vl~s~~i~d~~ 711 (817)
..+.+.+++|.++|++||+++|+||++. ++-..... .........| +++++|++++ |+|+ +++++++++.+
T Consensus 154 ~~~~~~l~~l~~l~~~~g~~livD~a~~-~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~---~~G~~~~~~~~~~~~~ 228 (353)
T PLN02721 154 CLSVEYTDKVGELAKRHGLKLHIDGARI-FNASVALGVPVHRLVKAADSVSVCLSKGLGA---PVGSVIVGSKSFIRKA 228 (353)
T ss_pred cccHHHHHHHHHHHHHcCCEEEEEchhh-hcchhhhCCCHHHHhhhCCEEEEecccccCC---ceeeEEecCHHHHHhH
Confidence 5589999999999999999999999984 43211000 0011111234 4588999973 5565 56788887765
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-10 Score=125.58 Aligned_cols=320 Identities=15% Similarity=0.092 Sum_probs=202.4
Q ss_pred CCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC--C--CCCCChHHHHHH
Q 003472 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM--F--PENVYEPALECA 449 (817)
Q Consensus 374 ~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~--~--~~~~~~~~~eLa 449 (817)
..+.++++.-+++. ..||+ .+++|.| ++.||...++++.+.+...+.+|+... . .-++-+.+.+|+
T Consensus 76 ~~~~v~e~~~~~~~---~i~G~----~~~N~aS---~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE 145 (467)
T KOG1358|consen 76 LNTPVLESVMLPHV---TIDGK----DVLNFAS---ANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLE 145 (467)
T ss_pred cCCcccccccCCce---EecCc----eeecccc---hhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccH
Confidence 44567777777763 34899 9999998 788898779999999999999997543 1 123578899999
Q ss_pred HHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCC
Q 003472 450 ELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP 529 (817)
Q Consensus 450 e~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~ 529 (817)
++|+.++| .+..+..+-|..+++.++..- ..|.+||..+..-+=...-++.++..
T Consensus 146 ~~iakF~G---~E~aivYs~gF~ti~S~ipaf----------------------sKrGDIi~~de~~nfaIq~GlqlSRS 200 (467)
T KOG1358|consen 146 KRIAKFMG---TEDAIVYSYGFSTIESAIPAF----------------------SKRGDIIFVDEAVNFAIQKGLQLSRS 200 (467)
T ss_pred HHHHHhhC---Ccceeeeccccchhhhcchhh----------------------hccCcEEEEehhhhHHHHHHHhhhhh
Confidence 99999998 467777788889999888754 23457888877666433334444421
Q ss_pred CCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHh
Q 003472 530 SPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLL 609 (817)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~ 609 (817)
.. .+| -|||+ +.+|+.+.
T Consensus 201 ~i--------------~~F------------------------------khndm------------------~~lerll~ 218 (467)
T KOG1358|consen 201 TI--------------SYF------------------------------KHNDM------------------EDLERLLP 218 (467)
T ss_pred ee--------------EEe------------------------------cCCCH------------------HHHHHhcc
Confidence 10 000 15665 33444433
Q ss_pred cCCC-C-CCCC---cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc--cchhhhcCCCC
Q 003472 610 QNPG-L-KVSG---CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVP 682 (817)
Q Consensus 610 ~~~~-~-~~~~---~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~--~~a~e~~gv~P 682 (817)
+... . +.+. ...-+++|.+ ....|.+.| +++|.++..+|..-+|+||..+ ||-.|+ .+..+|+|+.+
T Consensus 219 E~~~~~~K~~k~~~~Rrfiv~EGl-~~N~g~i~p----l~~iv~lk~Kyk~RvildEs~S-fG~lg~~GrGvteH~~v~~ 292 (467)
T KOG1358|consen 219 EQEDEDQKNPKKALTRRFIVVEGL-YANTGDICP----LPEIVKLKNKYKFRVILDESLS-FGVLGKTGRGVTEHFGVPI 292 (467)
T ss_pred CcchhhhhccccccceEEEEEEee-ccCCCcccc----cHHHHHHHhhheEEEEEecccc-cccccccCccccccCCCCc
Confidence 2110 0 1122 2457899998 777788888 9999999999999999999985 666666 66889999864
Q ss_pred ---ceeec--ccccC--CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcC-cCchhcHHH
Q 003472 683 ---DIACY--GKLLT--GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIP 754 (817)
Q Consensus 683 ---Divtl--gK~Lg--gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~-~~l~~~l~~ 754 (817)
|+++. .-+|+ ||+ ++++.-+.+.=.-. ...+-++-+-.|+...||..+++++++ ++..+.++.
T Consensus 293 ~~iDiv~~sm~~alas~GgF-----c~G~~~i~~hQrLS----g~~Y~fSAslPp~la~aa~~ai~i~~~~p~~~~~L~~ 363 (467)
T KOG1358|consen 293 TDIDIVTASMETALASGGGF-----CAGKSFIADHQRLS----GSGYCFSASLPPYLAGAAIKAILIEEWNPEIVQPLRA 363 (467)
T ss_pred cceeeeeecccccccccCce-----eecceeeEeeeecc----ccceeeeccCchhhhhhHHHHHHHHhhCcchhhhhhc
Confidence 56643 33443 443 55555444322111 112223344578999999999999975 555666666
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcceEEeee--eEEEEEEecCCCCCCc----chHHHHHHHHHHcCCC
Q 003472 755 ERRILRELWDLELIQQISSHRTVQRVVALG--TLCAIELQAAGCNAGY----CLIELFLYNFLTTGMH 816 (817)
Q Consensus 755 ~~~~lg~~l~~~l~~~l~~~p~V~~VrG~G--lm~gIel~~~~~~~~~----~~~~~~~~~~l~~Gv~ 816 (817)
.+..+...|. ... --.|.|.- -++.+.+.+. .... ...+.++.+|+.+|++
T Consensus 364 k~~~~H~~l~--------~~s-~~~v~~~~~SPi~hl~l~~~--~~s~e~e~~lL~eivd~~i~~~~l 420 (467)
T KOG1358|consen 364 KVAKFHAALS--------SNS-GFIVSGSPESPIIHLQLERS--YGSREKEEKLLEEIVDKCIAEGVL 420 (467)
T ss_pred cccccchhhh--------cCC-ceEEecCcCCceeeeeeccc--ccchHHHHHHHHHHHHHHHhhcce
Confidence 5555443221 111 01233322 2344444442 1221 3556677777777654
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.5e-09 Score=116.26 Aligned_cols=292 Identities=14% Similarity=0.089 Sum_probs=164.3
Q ss_pred CHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCc-ceEEEeCChHHHHHHHHHHHHHHhhcccccccccc
Q 003472 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA-SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~-~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~ 496 (817)
.|.|.+++... ..+.. ....+...++.++|+++++.+.- ..++++.+|++|++.++....
T Consensus 11 ~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~-------------- 71 (355)
T TIGR03301 11 SATVRDAMLVD---WCHWD--SEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV-------------- 71 (355)
T ss_pred CHHHHHHhhhh---ccCCC--HHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc--------------
Confidence 56666666652 12211 11236677888999998774311 257789999999999998772
Q ss_pred CCCccccccceEEEEEcCCccCCcccccc-ccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhccccc
Q 003472 497 GKDTTEKCIELKVLALKGSYHGDTLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (817)
Q Consensus 497 ~~~~~~~~~r~~II~~~gsyHG~t~gals-lt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~ 575 (817)
..+.++|....+++|......+ ..|.+ +..++.+...
T Consensus 72 -------~~~~~vi~~~~~~~~~~~~~~a~~~g~~----------------------------~~~i~~~~~~------- 109 (355)
T TIGR03301 72 -------PRDGKLLVLINGAYGERLAKICEYLGIP----------------------------HTDLNFSEYE------- 109 (355)
T ss_pred -------CCCCeEEEECCCchhhHHHHHHHHcCCc----------------------------eEEEecCCCC-------
Confidence 1124677777777765321111 11110 0111111000
Q ss_pred ccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE-EEccccccCCCcccCCHHHHHHHHHHHhhcC
Q 003472 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL-IIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (817)
Q Consensus 576 ~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAv-IvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~G 654 (817)
..| .+.+++.+.+ ++ ++..+ ++-+ ....|.+.+ +++|.++|++||
T Consensus 110 ----~~d------------------~~~l~~~l~~-----~~-~~~~v~~~~~--~~~~G~~~~----~~~i~~l~~~~~ 155 (355)
T TIGR03301 110 ----PPD------------------LNRIEEALAA-----DP-DITHVATVHH--ETTTGILNP----LEAIAKVARSHG 155 (355)
T ss_pred ----CCC------------------HHHHHHHHHh-----CC-CceEEEEEec--CCcccchhH----HHHHHHHHHHcC
Confidence 011 2556666653 12 33333 3323 344577765 899999999999
Q ss_pred CcEEEeeeeeccccccccchhhhcCCCCce--eecccccCCCCCcceEEEechHHHhhhcCCCccceee-----------
Q 003472 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDI--ACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALL----------- 721 (817)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDi--vtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~----------- 721 (817)
+++|+|++++ +|.. .+....+ ..|+ .+++|.++|+ .-+|.+++++++++.+........+-
T Consensus 156 ~~livD~~~s-~g~~--~~~~~~~--~~d~~~~s~~K~l~~~-~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (355)
T TIGR03301 156 AVLIVDAMSS-FGAI--PIDIEEL--DVDALIASANKCLEGV-PGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKT 229 (355)
T ss_pred CEEEEEeccc-cCCc--ccchhhc--CccEEEecCCcccccC-CceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhc
Confidence 9999999985 6532 2323333 3555 4889998764 22588999999988775321100000
Q ss_pred cccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcc-eEEeeeeEEEEEEecCCCCCCc
Q 003472 722 HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ-RVVALGTLCAIELQAAGCNAGY 800 (817)
Q Consensus 722 h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~-~VrG~Glm~gIel~~~~~~~~~ 800 (817)
-...|+.++.++.++.++|+.+.+++..++..++.+...+++.+.+.+. ....+. +.+..|+++.+.+.... .
T Consensus 230 ~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~----~ 303 (355)
T TIGR03301 230 GKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL--GFQPLLPERWQSPIIVSFLYPDDP----D 303 (355)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc--CCeeecCCCCCCCcEEEEECCCCC----c
Confidence 0124566788888888999988664433444444455555555443321 122222 22345667777775421 0
Q ss_pred chHHHHHHHHHHcCCC
Q 003472 801 CLIELFLYNFLTTGMH 816 (817)
Q Consensus 801 ~~~~~~~~~~l~~Gv~ 816 (817)
.....+...+.++||.
T Consensus 304 ~~~~~~~~~l~~~gi~ 319 (355)
T TIGR03301 304 FDFDDFYQELKERGFV 319 (355)
T ss_pred chHHHHHHHHHHCCEE
Confidence 1335677888888874
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.3e-09 Score=116.33 Aligned_cols=293 Identities=13% Similarity=0.068 Sum_probs=163.1
Q ss_pred CHHHHHHHHHHHHhcc-ccCCCCCCChHHHHHHHHHHhhcCCC-CcceEEEeCChHHHHHHHHHHHHHHhhccccccccc
Q 003472 418 QIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~ 495 (817)
.+.+.+++++.+.... .+....+..+....+++.+.+..+.. .-+.++++++|++|+..+++... .
T Consensus 39 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~----~-------- 106 (382)
T PRK06108 39 PDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALV----G-------- 106 (382)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhc----C--------
Confidence 6889999888776532 12212234566777888887654411 12579999999999998888661 1
Q ss_pred cCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhccccc
Q 003472 496 LGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (817)
Q Consensus 496 ~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~ 575 (817)
+ ...|+..+-+|.+-. ......|.. .+.+|...
T Consensus 107 --------~-gd~vl~~~p~y~~~~-~~~~~~g~~------------------------------~~~v~~~~------- 139 (382)
T PRK06108 107 --------P-GDEVVAVTPLWPNLV-AAPKILGAR------------------------------VVCVPLDF------- 139 (382)
T ss_pred --------C-CCEEEEeCCCccchH-HHHHHCCCE------------------------------EEEeeCCC-------
Confidence 1 135666666664321 111111110 01111000
Q ss_pred ccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCC
Q 003472 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (817)
Q Consensus 576 ~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~Gi 655 (817)
.+ .-|. -| .+.+++.+. .++.++++... +.-.|.+. +.+.+++|.++|+++|+
T Consensus 140 -----~~--~~~~--~d--------~~~l~~~~~--------~~~~~i~l~~p-~NPtG~~~-~~~~~~~l~~~~~~~~~ 192 (382)
T PRK06108 140 -----GG--GGWT--LD--------LDRLLAAIT--------PRTRALFINSP-NNPTGWTA-SRDDLRAILAHCRRHGL 192 (382)
T ss_pred -----CC--CCcc--CC--------HHHHHHhcC--------ccceEEEEECC-CCCCCccc-CHHHHHHHHHHHHHCCc
Confidence 00 0000 00 144555543 13445555443 55567665 78999999999999999
Q ss_pred cEEEeeeeeccccc-cccchhhhcCC---CCc-e--eecccccC-CCCCcceEEEechHHHhhhcCCCccceeecccCCC
Q 003472 656 PVIFDEVFTGFWRL-GVETTADLLGC---VPD-I--ACYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYS 727 (817)
Q Consensus 656 lLI~DEV~TGfGRt-G~~~a~e~~gv---~PD-i--vtlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~ 727 (817)
++|+||++.+|... +... ....++ .+. + .+++|.+| .| +.+|.+++++++.+.+... ....+++
T Consensus 193 ~li~De~y~~~~~~~~~~~-~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~~~~~~~~~~~~~~~------~~~~~~~ 264 (382)
T PRK06108 193 WIVADEVYERLYYAPGGRA-PSFLDIAEPDDRIIFVNSFSKNWAMTG-WRLGWLVAPPALGQVLEKL------IEYNTSC 264 (382)
T ss_pred EEEEehhhhhhccCCCCCC-CCHhhcCCCcCCEEEEeechhhccCcc-cceeeeeCCHHHHHHHHHH------HHhcccC
Confidence 99999999877332 1111 111122 122 2 28999987 57 7999999999998877421 1234566
Q ss_pred CCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEee-eeEEEEEEecCCCCCCcchHHHH
Q 003472 728 AHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYCLIELF 806 (817)
Q Consensus 728 gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~-Glm~gIel~~~~~~~~~~~~~~~ 806 (817)
.+++..+++.++|+.- ++..+++.++.+...++ +.+.+++.+.+.-+... |+++-+++... .....+
T Consensus 265 ~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~~----l~~~L~~~~~~~~~~p~~g~~~~~~l~~~------~~~~~~ 332 (382)
T PRK06108 265 VAQFVQRAAVAALDEG--EDFVAELVARLRRSRDH----LVDALRALPGVEVAKPDGAMYAFFRIPGV------TDSLAL 332 (382)
T ss_pred CChHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHH----HHHHHHhCCCCcccCCCeeEEEEEeCCCC------CCHHHH
Confidence 7888888888777532 22233444444444443 33444444433323333 55556666533 123456
Q ss_pred HHHHHH-cCCC
Q 003472 807 LYNFLT-TGMH 816 (817)
Q Consensus 807 ~~~~l~-~Gv~ 816 (817)
...+++ +||+
T Consensus 333 ~~~ll~~~gV~ 343 (382)
T PRK06108 333 AKRLVDEAGLG 343 (382)
T ss_pred HHHHHHhCCEE
Confidence 666654 5763
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.9e-09 Score=115.16 Aligned_cols=293 Identities=11% Similarity=0.088 Sum_probs=165.3
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alk 479 (817)
+++||.++. ..+| . +|.+.+++.+.+..+..+. .....+|.+.++++.+-. .+.++++++.+++...++.
T Consensus 33 ~~i~l~~~~--~~~~-~-~~~~~~a~~~~~~~~~~y~-----~~~~~~lr~~ia~~~~~~-~~~i~~t~G~~~~l~~~~~ 102 (367)
T PRK02731 33 DIIKLASNE--NPLG-P-SPKAIEAIRAAADELHRYP-----DGSGFELKAALAEKFGVD-PERIILGNGSDEILELLAR 102 (367)
T ss_pred ceEEecCCC--CCCC-C-CHHHHHHHHHHHHhhcCCC-----CCcHHHHHHHHHHHhCcC-HHHEEEcCCHHHHHHHHHH
Confidence 789998842 3456 3 6889999998876543221 112346777777776532 2568888877777766555
Q ss_pred HHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcc
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (817)
.. .+ . ...|+..+-+|.+....+ ...|.. +
T Consensus 103 ~l----~~-~----------------gd~vl~~~p~y~~~~~~~-~~~g~~----------------------------~ 132 (367)
T PRK02731 103 AY----LG-P----------------GDEVIYSEHGFAVYPIAA-QAVGAK----------------------------P 132 (367)
T ss_pred Hh----cC-C----------------CCEEEEecCCHHHHHHHH-HHcCCe----------------------------E
Confidence 43 11 1 135777666665422111 111110 0
Q ss_pred eeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp 639 (817)
..++.. .+ ..| .+.+++.+. ++..+|++.-. +.-.|.+.+
T Consensus 133 ~~~~~~-~~-----------~~~------------------~~~l~~~~~--------~~~~~v~l~~p-~nptG~~~~- 172 (367)
T PRK02731 133 VEVPAK-DY-----------GHD------------------LDAMLAAVT--------PRTRLVFIANP-NNPTGTYLP- 172 (367)
T ss_pred EEeccc-CC-----------CCC------------------HHHHHHHhC--------CCCcEEEEeCC-CCCCCcCCC-
Confidence 011110 00 001 144555553 12344544443 566787775
Q ss_pred HHHHHHHHHHHhhcCCcEEEeeeeeccccccc-cchhhhcCCCCcee---ecccccC-CCCCcceEEEechHHHhhhcCC
Q 003472 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (817)
Q Consensus 640 ~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~-~~a~e~~gv~PDiv---tlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~ 714 (817)
.+-++++.+.|+ +|+++|+||++..+...+. .......+..++++ +++|.+| .| +.+|.+++++++.+.+...
T Consensus 173 ~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~l~~~~~~~~~l~~~ 250 (367)
T PRK02731 173 AEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAG-LRVGYGIAPPEIIDALNRV 250 (367)
T ss_pred HHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcc-cceeeeeCCHHHHHHHHHc
Confidence 334444444443 4999999999876644332 22333344445655 8899997 68 7999999999998887532
Q ss_pred CccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecC
Q 003472 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (817)
Q Consensus 715 ~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~ 794 (817)
..+|..++++.+++.+.|+ +++..+++.+..+...+ .+.+.+++++.. -+...|.++.+++.+.
T Consensus 251 --------~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~~~----~l~~~L~~~g~~-~~~~~g~~~~i~~~~~ 314 (367)
T PRK02731 251 --------RQPFNVNSLALAAAVAALD---DDAFVEKSRALNAEGMA----WLTEFLAELGLE-YIPSVGNFILVDFDDG 314 (367)
T ss_pred --------cCCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHH----HHHHHHHHCCCc-cCCCCceEEEEECCCC
Confidence 1345667888877766663 32333333333333333 344445544421 2234588888887332
Q ss_pred CCCCCcchHHHHHHHHHHcCCC
Q 003472 795 GCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 795 ~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.....+...+.++||+
T Consensus 315 ------~~~~~~~~~L~~~gI~ 330 (367)
T PRK02731 315 ------KDAAEAYQALLKRGVI 330 (367)
T ss_pred ------CCHHHHHHHHHHCCEE
Confidence 2356677788888874
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.2e-09 Score=115.91 Aligned_cols=258 Identities=14% Similarity=0.114 Sum_probs=147.9
Q ss_pred ChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCcc
Q 003472 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (817)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~ 521 (817)
.+...++++.|+++++. +.+++++||++|++.+++.. +. .. ..+|+....+||+...
T Consensus 17 ~~~~~~~~~~la~~~~~---~~~~~~~sgt~al~~~l~~l-~~---~~----------------gd~vl~~~~~~~~~~~ 73 (352)
T cd00616 17 GPKVREFEKAFAEYLGV---KYAVAVSSGTAALHLALRAL-GI---GP----------------GDEVIVPSFTFVATAN 73 (352)
T ss_pred CHHHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHc-CC---CC----------------CCEEEeCCcchHHHHH
Confidence 56788999999999983 57899999999999999876 11 11 2368888888886432
Q ss_pred ccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCc-hhhhcccccccccccCcchhhhhccCchhHHHHH
Q 003472 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (817)
Q Consensus 522 galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~-~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~ 600 (817)
++...|.. +..++.+. .+ ..|
T Consensus 74 -~~~~~g~~----------------------------~~~~~~~~~~~-----------~~d------------------ 95 (352)
T cd00616 74 -AILLLGAT----------------------------PVFVDIDPDTY-----------NID------------------ 95 (352)
T ss_pred -HHHHcCCe----------------------------EEEEecCCCcC-----------CcC------------------
Confidence 22211110 00111100 00 011
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC
Q 003472 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (817)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv 680 (817)
.+.+++.+. .++++|++..+ . |...+ +++|+++|+++|+++|+|++|+ +|... .....|.
T Consensus 96 ~~~l~~~i~--------~~~~~v~~~~~-~---G~~~~----~~~i~~l~~~~~i~li~D~a~~-~g~~~---~~~~~~~ 155 (352)
T cd00616 96 PELIEAAIT--------PRTKAIIPVHL-Y---GNPAD----MDAIMAIAKRHGLPVIEDAAQA-LGATY---KGRKVGT 155 (352)
T ss_pred HHHHHHhcC--------cCCeEEEEECC-C---CCcCC----HHHHHHHHHHcCCeEEEECCCC-CCCeE---CCEEccc
Confidence 144555543 24567776664 3 44443 8999999999999999999996 44332 1122344
Q ss_pred CCceeecc----cccCCCCCcceEEEec-hHHHhhhcC---CCcc------ceeecccCCCCCHHHHHHHHHHHHHhcCc
Q 003472 681 VPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFVG---DSKL------KALLHGHSYSAHALGCAAAAKSIKWFKDP 746 (817)
Q Consensus 681 ~PDivtlg----K~LggGy~PlsAvl~s-~~i~d~~~~---~~~~------~~~~h~~T~~gnPla~AAAlA~L~~l~~~ 746 (817)
..|+.+++ |.+++| ..|+++++ +++.+.+.. .... .....+.++..+++.++.++..++.+++
T Consensus 156 ~~d~~~~S~~~~K~~~~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~~~- 232 (352)
T cd00616 156 FGDAGAFSFHPTKNLTTG--EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKLDE- 232 (352)
T ss_pred CcceeEEcCCCCCCCccc--CceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhhHH-
Confidence 46888776 999655 35666665 466554321 1100 0112345667789999999887776632
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHHHHcCCC---cceE---EeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 747 QTNHNIIPERRILRELWDLELIQQISSHRT---VQRV---VALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 747 ~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~---V~~V---rG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.++.+.+.+++.+.| ++.|. +... .....++.|.+... .......+...+.++||.
T Consensus 233 -----~~~~~~~~~~~~~~~L----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~L~~~gI~ 295 (352)
T cd00616 233 -----IIARRREIAERYKELL----ADLPGIRLPDVPPGVKHSYHLYVIRLDPE----AGESRDELIEALKEAGIE 295 (352)
T ss_pred -----HHHHHHHHHHHHHHHh----cCCCCccCCCCCCCCceeeEEEEEEECCc----CCCCHHHHHHHHHHCCCC
Confidence 3333344444444333 33222 2111 12445666666431 013455677777778873
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.9e-09 Score=116.23 Aligned_cols=291 Identities=12% Similarity=0.078 Sum_probs=162.3
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alk 479 (817)
+.|||++|.- .++. +|++++|+++++.....+. .+...+|.+.++++++-. .+.+.+++++++++..+++
T Consensus 20 ~~i~l~~~~~--~~~~--~~~~~~a~~~~~~~~~~y~-----~~~~~~lr~~ia~~~~~~-~~~i~~~~G~~~~l~~~~~ 89 (346)
T TIGR01141 20 EVIKLNSNEN--PFGP--PPKAKEALRAEADKLHRYP-----DPDPAELKQALADYYGVD-PEQILLGNGSDEIIELLIR 89 (346)
T ss_pred ceEEccCCCC--CCCC--CHHHHHHHHHhHHHhhcCC-----CCCHHHHHHHHHHHhCcC-hHHEEEcCCHHHHHHHHHH
Confidence 7899987432 3443 7999999998875432221 122356777888776622 3578999999999988877
Q ss_pred HHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcc
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (817)
... .. ..+|+..+.+|.... ......|.. +
T Consensus 90 ~l~-----~~----------------gd~v~~~~p~y~~~~-~~~~~~g~~----------------------------~ 119 (346)
T TIGR01141 90 AFL-----EP----------------GDAVLVPPPTYSMYE-ISAKIHGAE----------------------------V 119 (346)
T ss_pred Hhc-----CC----------------CCEEEEcCCCHHHHH-HHHHHcCCe----------------------------E
Confidence 651 11 136777766663211 111111100 0
Q ss_pred eeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp 639 (817)
..++..... ..| .+.+++.+. .++.+|++... ....|.+.+
T Consensus 120 ~~~~~~~~~-----------~~d------------------~~~l~~~~~--------~~~~~v~l~~p-~NptG~~~~- 160 (346)
T TIGR01141 120 VKVPLDEDG-----------QLD------------------LEDILVAID--------DKPKLVFLCSP-NNPTGNLLS- 160 (346)
T ss_pred EEeccCCCC-----------CCC------------------HHHHHHhcC--------CCCCEEEEeCC-CCCCCCCCC-
Confidence 001100000 011 134444332 24556666644 566788775
Q ss_pred HHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCCcceEEEechHHHhhhcCCC
Q 003472 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDS 715 (817)
Q Consensus 640 ~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~~ 715 (817)
.+.++++.+.|+ +|+++|+||++..+...+... ......++++ +++|.+| .| +.+|.+++++++.+.+...
T Consensus 161 ~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~~~--~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~~- 235 (346)
T TIGR01141 161 RSDIEAVLERTP-EDALVVVDEAYGEFSGEPSTL--PLLAEYPNLIVLRTLSKAFGLAG-LRIGYAIANAEIIDALNKV- 235 (346)
T ss_pred HHHHHHHHHhCC-CCcEEEEECchhhhcCCccHH--HHHhhCCCEEEEehhhHhhhchh-hhceeeecCHHHHHHHHhc-
Confidence 334444444444 499999999998774322211 1222234544 7899996 47 6889999999998887532
Q ss_pred ccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCC
Q 003472 716 KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795 (817)
Q Consensus 716 ~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~ 795 (817)
..+++.++++++++.+.++.. +..++..+..+...+ .+.+.++++|.+.-+...|.++.+++..
T Consensus 236 -------~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~----~l~~~L~~~~g~~~~~~~g~~~~~~~~~-- 299 (346)
T TIGR01141 236 -------RAPFNLSRLAQAAAIAALRDD---DFIEKTVEEINAERE----RLYDGLKKLPGLEVYPSDANFVLIRFPR-- 299 (346)
T ss_pred -------cCCCCCCHHHHHHHHHHhCCH---HHHHHHHHHHHHHHH----HHHHHHHhcCCCEECCCcCCEEEEecCC--
Confidence 235667888888877766432 112233333333333 3344444554333223357788887753
Q ss_pred CCCCcchHHHHHHHHHHcCCC
Q 003472 796 CNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 796 ~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
....+...+.++||+
T Consensus 300 ------~~~~~~~~L~~~gI~ 314 (346)
T TIGR01141 300 ------DADALFEALLEKGII 314 (346)
T ss_pred ------CHHHHHHHHHHCCeE
Confidence 235577778888864
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-08 Score=117.00 Aligned_cols=169 Identities=11% Similarity=0.050 Sum_probs=97.2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhh----h
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD----L 677 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e----~ 677 (817)
+.|++.+.+ .+++++++|+++.. ..-.|-.+.+.+.+++|+++|++||+++|.|+++..- +.+|..+ +
T Consensus 164 e~Le~~i~~----~~~~~tk~Ivl~~p-~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e---~a~f~~~~e~g~ 235 (460)
T PRK13238 164 EKLEALIEE----VGAENVPFIVMTIT-NNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAE---NAYFIKQREPGY 235 (460)
T ss_pred HHHHHHHhh----cCCCceeEEEEecC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhh---hhhhhhhccccc
Confidence 567777763 23457888998865 4443434557899999999999999999999988420 1111110 0
Q ss_pred cC-----------CCCceeecccccCCCCCcceEEEec--hHHHhhhcCCCccceeeccc-CCCCCHHHHHHHHHH-H-H
Q 003472 678 LG-----------CVPDIACYGKLLTGGVIPLAATLAT--NAVFDSFVGDSKLKALLHGH-SYSAHALGCAAAAKS-I-K 741 (817)
Q Consensus 678 ~g-----------v~PDivtlgK~LggGy~PlsAvl~s--~~i~d~~~~~~~~~~~~h~~-T~~gnPla~AAAlA~-L-~ 741 (817)
.+ =-.|+++++ +--.|+.|.|++++. +++++.+... ..+.+++ ||+|++..|.+|+++ | +
T Consensus 236 ~~~si~~i~~~~~s~~D~~~~S-g~K~g~~~~GG~i~~~d~~l~~~~~~~---~~~~~g~~t~~g~~~~~~~Ala~~l~e 311 (460)
T PRK13238 236 KDKSIKEIAREMFSYADGLTMS-AKKDAMVNIGGLLCFRDEDLFTECRTL---CILYEGFPTYGGLAGRDMEALAVGLYE 311 (460)
T ss_pred cCCCHHHHhhhhcccCcEEEEe-cccCCCCcceeEEEcChHHHHHHhhhc---ccccCCcccccCcHHHHHHHHHhhHHH
Confidence 01 125777665 222355676666663 4666665321 1223555 999988887777774 4 4
Q ss_pred HhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEE
Q 003472 742 WFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791 (817)
Q Consensus 742 ~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel 791 (817)
.+++ +..+...++.+++.+ .|.+ ...|.+....| .++-+++
T Consensus 312 ~~~~-~~~~~~~~~~~~l~~----~L~~--~G~~~~~p~Gg--~~v~~d~ 352 (460)
T PRK13238 312 GMDE-DYLAYRIGQVEYLGE----GLEE--AGVPIQTPAGG--HAVFVDA 352 (460)
T ss_pred hhCh-HHHHHHHHHHHHHHH----HHHH--CCCCeEccCCc--eEEEEEc
Confidence 4443 333333333333333 3322 25666665555 4444444
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=8e-09 Score=115.27 Aligned_cols=291 Identities=8% Similarity=0.006 Sum_probs=164.5
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alk 479 (817)
.++|+.++.. .+|. +|.+.+|+.++++.+.+.. ..-..+|.+.++++.+-. .+.+++++++++|...+++
T Consensus 30 ~~i~l~~n~~--~~~~--~~~v~~a~~~~~~~~~~~p-----~~g~~~lr~~ia~~~~~~-~~~i~~t~G~~~~l~~~~~ 99 (359)
T PRK03158 30 KIVKLASNEN--PYGP--SPKVKEAIAAHLDELALYP-----DGYAPELRTKVAKHLGVD-EEQLLFGAGLDEVIQMISR 99 (359)
T ss_pred ceEEecCCCC--CCCC--CHHHHHHHHHHHHHhhcCC-----CCcHHHHHHHHHHHhCCC-HHHEEECCCHHHHHHHHHH
Confidence 5788877432 3553 7999999998887654332 122345566666655422 3579999999999887766
Q ss_pred HHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcc
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (817)
... . . ...|+..+-+|++....+ ...|.. +
T Consensus 100 ~~~----~-~----------------gd~v~~~~p~y~~~~~~~-~~~g~~----------------------------~ 129 (359)
T PRK03158 100 ALL----N-P----------------GTNTVMAEPTFSQYRHNA-IIEGAE----------------------------V 129 (359)
T ss_pred HHh----C-C----------------CCEEEEcCCCHHHHHHHH-HHcCCe----------------------------E
Confidence 541 1 1 236888888888632111 111110 0
Q ss_pred eeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp 639 (817)
..++... . -.| .+.+++.+. .++.++++... +.-.|.+.+
T Consensus 130 ~~~~~~~-~-----------~~d------------------~~~l~~~~~--------~~~~~v~i~~p-~NPtG~~~~- 169 (359)
T PRK03158 130 REVPLKD-G-----------GHD------------------LEAMLKAID--------EQTKIVWICNP-NNPTGTYVN- 169 (359)
T ss_pred EEEecCC-C-----------CcC------------------HHHHHHhcC--------CCCCEEEEeCC-CCCCCCCCC-
Confidence 1111100 0 000 134444443 13445555543 777888886
Q ss_pred HHHHHHHHHHHhhcCCcEEEeeeeeccccccc-cchhhhcCCC-Ccee--ecccccC-CCCCcceEEEechHHHhhhcCC
Q 003472 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCV-PDIA--CYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (817)
Q Consensus 640 ~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~-~~a~e~~gv~-PDiv--tlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~ 714 (817)
.+-+.++.+.|+ +|+++|+||++..|-.-+. .......+-. ..++ +|||.+| .| +.+|.+++++++++.+...
T Consensus 170 ~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~~v~~~~~~~~~~~~ 247 (359)
T PRK03158 170 HEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAA-LRVGYGIASEELIEKLNIA 247 (359)
T ss_pred HHHHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcc-hhhehhcCCHHHHHHHHHh
Confidence 333444444442 6999999999965521111 1111111111 2343 8999998 68 8999999999999887531
Q ss_pred CccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecC
Q 003472 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (817)
Q Consensus 715 ~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~ 794 (817)
..++..++++.+++.++|+ +.+..+++.+..+... +.+.+.+++++ +.-+...|.++.+++..
T Consensus 248 --------~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~----~~~~~~l~~~~-~~~~~~~g~~i~~~~~~- 310 (359)
T PRK03158 248 --------RPPFNTTRIAQYAAIAALE---DQAFLKECVEKNAEGL----EQYYAFCKEYG-LFYYPSQTNFIFVDTGR- 310 (359)
T ss_pred --------cCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHH----HHHHHHHHHCC-CeeCCCcCcEEEEECCC-
Confidence 2357789999999888874 3222333333222222 23444555553 32345567887777632
Q ss_pred CCCCCcchHHHHHHHHHHcCCC
Q 003472 795 GCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 795 ~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
....+...++++||+
T Consensus 311 -------~~~~~~~~l~~~gv~ 325 (359)
T PRK03158 311 -------DANELFEALLKKGYI 325 (359)
T ss_pred -------CHHHHHHHHHHCCeE
Confidence 235577777888874
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-09 Score=117.42 Aligned_cols=233 Identities=13% Similarity=0.017 Sum_probs=137.4
Q ss_pred eccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHH
Q 003472 403 DACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF 482 (817)
Q Consensus 403 D~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~ 482 (817)
||+| .+++| . +|.+.+|+.+.+.... . .+..+...++.+.++++.+. +.++++++|++|+..+++..+
T Consensus 1 ~~~~---~~~~~-~-~~~v~~a~~~~~~~~~--~--~~~~~~~~~l~~~~a~~~g~---~~~~~~~~gt~a~~~~~~~l~ 68 (338)
T cd06502 1 DFRS---DTVTG-P-TPEMLEAMAAANVGDD--V--YGEDPTTAKLEARAAELFGK---EAALFVPSGTAANQLALAAHT 68 (338)
T ss_pred Cccc---ccCCC-C-CHHHHHHHHhcccCCc--c--cCCCHHHHHHHHHHHHHhCC---CeEEEecCchHHHHHHHHHhc
Confidence 4555 56677 4 7999999987653221 1 12356688999999998872 578899999999999888661
Q ss_pred HHhhccccccccccCCCccccccceEEEEEcCCccCCccccc---cccCCCCCCCcCCCCCccCCccccCCCcccccCcc
Q 003472 483 RKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM---EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 483 r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~gal---slt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (817)
.. ...|+ ....+|.....+. .+.|...
T Consensus 69 -----~~----------------gd~v~-~~~~~~~~~~~~~~~~~~~g~~~---------------------------- 98 (338)
T cd06502 69 -----QP----------------GGSVI-CHETAHIYTDEAGAPEFLSGVKL---------------------------- 98 (338)
T ss_pred -----CC----------------CCeEE-EecCcceeeecCCcHHHHcCceE----------------------------
Confidence 11 12444 5556665432211 1111100
Q ss_pred eeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp 639 (817)
..++... + ..| .+.+++.+.+.. ..+..+..+|+++.. ...||.. +
T Consensus 99 ~~v~~~~-~-----------~~d------------------~~~l~~~i~~~~-~~~~~~~~~v~l~~p-~n~g~~~--~ 144 (338)
T cd06502 99 LPVPGEN-G-----------KLT------------------PEDLEAAIRPRD-DIHFPPPSLVSLENT-TEGGTVY--P 144 (338)
T ss_pred EeecCCC-C-----------cCC------------------HHHHHHHhhccC-CCcCCcceEEEEEee-cCCcccc--C
Confidence 0111000 0 011 145666665310 011135667777764 4555543 7
Q ss_pred HHHHHHHHHHHhhcCCcEEEeeeeecccc---ccccchhhhcCCCCcee--ecccccCCCCCcceE-EEechHHHhhhcC
Q 003472 640 PLFQRILVKECQNRKIPVIFDEVFTGFWR---LGVETTADLLGCVPDIA--CYGKLLTGGVIPLAA-TLATNAVFDSFVG 713 (817)
Q Consensus 640 ~~yl~~Lr~Lc~~~GilLI~DEV~TGfGR---tG~~~a~e~~gv~PDiv--tlgK~LggGy~PlsA-vl~s~~i~d~~~~ 713 (817)
...+++|.++|+++|+++|+||++. ++- .|. ....+...+|++ +++|.+|. |.++ +++++++++.+..
T Consensus 145 ~~~l~~i~~~~~~~~~~livDea~~-~~~~~~~~~--~~~~~~~~~d~~~~s~sK~~~~---~~g~~~~~~~~~~~~~~~ 218 (338)
T cd06502 145 LDELKAISALAKENGLPLHLDGARL-ANAAAALGV--ALKTYKSGVDSVSFCLSKGGGA---PVGAVVVGNRDFIARARR 218 (338)
T ss_pred HHHHHHHHHHHHHcCCeEeechHHH-HHHHHhcCC--CHHHHHhcCCEEEEeccccCCC---ccceEEECCHHHHHHHHH
Confidence 8899999999999999999999873 111 121 122223356766 77888863 3344 4578888887743
Q ss_pred CCccceeecccCCCCCHHHHHHHHHHHH
Q 003472 714 DSKLKALLHGHSYSAHALGCAAAAKSIK 741 (817)
Q Consensus 714 ~~~~~~~~h~~T~~gnPla~AAAlA~L~ 741 (817)
.. ..+++++..+++.++++.++|+
T Consensus 219 ~~----~~~~~~~~~~~~~~~a~~~~L~ 242 (338)
T cd06502 219 RR----KQAGGGMRQSGFLAAAGLAALE 242 (338)
T ss_pred HH----HHhCCChhhHHHHHHHHHHHhc
Confidence 11 1234566677888888877775
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-08 Score=113.25 Aligned_cols=167 Identities=12% Similarity=0.197 Sum_probs=107.1
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCCc
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIP 697 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~P 697 (817)
.++..|. .-. |.+. +.+-++++.++|++ |+++|+||+...|+..|...... ...|+++ +|||.+| .| +.
T Consensus 159 i~l~~P~-NPt-G~~~-~~~~l~~l~~~~~~-~~~lI~DE~y~~~~~~~~~~~~~--~~~~~~i~~~SfSK~~g~~G-lR 231 (369)
T PRK08153 159 VYLANPD-NPM-GSWH-PAADIVAFIEALPE-TTLLVLDEAYCETAPAGAAPPID--TDDPNVIRMRTFSKAYGLAG-AR 231 (369)
T ss_pred EEEeCCC-CCC-CCCC-CHHHHHHHHHhCCC-CcEEEEeCchhhhcCcccchhhh--hcCCCEEEEecchHhccCcc-hh
Confidence 3455785 444 6655 56667777777774 99999999998776544321111 1234543 8999998 78 89
Q ss_pred ceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 003472 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (817)
Q Consensus 698 lsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V 777 (817)
+|.+++++++++.+... ..+++.++++.+++.++|+ +++..+++.+..+...+ .+.+.+++++.
T Consensus 232 iG~~v~~~~~~~~l~~~--------~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~----~~~~~L~~~g~- 295 (369)
T PRK08153 232 VGYAIGAPGTIKAFDKV--------RNHFGMNRIAQAAALAALK---DQAYLAEVVGKIAAARD----RIAAIARANGL- 295 (369)
T ss_pred eeeeecCHHHHHHHHHh--------hcCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHH----HHHHHHHHCCC-
Confidence 99999999999887532 2357789999999988884 33333444444444333 44445555443
Q ss_pred ceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 778 QRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 778 ~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
..+...|.++-+++..+. +....+...++++||.
T Consensus 296 ~~~p~~~~f~~~~~~~~~-----~~a~~l~~~l~~~Gi~ 329 (369)
T PRK08153 296 TPLPSATNFVAIDCGRDG-----AFARAVLDGLIARDIF 329 (369)
T ss_pred ccCCCcCcEEEEECCCCc-----ccHHHHHHHHHHCCeE
Confidence 122345667666654221 4567888889999974
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.9e-09 Score=118.91 Aligned_cols=137 Identities=12% Similarity=0.020 Sum_probs=84.2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC
Q 003472 602 SYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIv-EPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv 680 (817)
+.|++.+++. .+ + .||+ |.+ .++.+ + +++|+++|+++|++|++|++| ++|-.|..+....++
T Consensus 173 d~Le~~l~~~----~p-k--lIv~~~S~-~s~~~---D----~a~i~~ia~~~ga~LlvD~AH-~~Gli~~~~~~~p~~- 235 (475)
T PLN03226 173 DKLEKKAMLF----RP-K--LIIAGASA-YPRDW---D----YARMRKIADKVGALLMCDMAH-ISGLVAAQEAASPFE- 235 (475)
T ss_pred HHHHHHHhhc----CC-e--EEEEecCc-CCCcc---C----HHHHHHHHHHcCCEEEEEchh-hhCcccCCCCCCCCC-
Confidence 5677777531 12 2 3444 776 44433 3 679999999999999999999 466666543222233
Q ss_pred CCcee--ecccccCCCCCcceEEEechHHH-----------hh--hcCCCccceeecccCCCCCHHHHHHHHHHHHHhcC
Q 003472 681 VPDIA--CYGKLLTGGVIPLAATLATNAVF-----------DS--FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD 745 (817)
Q Consensus 681 ~PDiv--tlgK~LggGy~PlsAvl~s~~i~-----------d~--~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~ 745 (817)
..|++ |+.|+|.|- .-|.+++++++. +. ..+.. .+.+++.+-++..+++..++|+.+.+
T Consensus 236 ~~Div~~t~hK~L~GP--~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a----~~~~~~g~p~~~~iaal~aAl~~i~~ 309 (475)
T PLN03226 236 YCDVVTTTTHKSLRGP--RGGMIFFRKGPKPPKGQGEGAVYDYEDKINFA----VFPGLQGGPHNHTIAALAVALKQAMT 309 (475)
T ss_pred CCeEEEecCcccccCC--CceEEEEchhhcccccCCCccHHHHHHHhccc----cCCccCCCchHHHHHHHHHHHHHHhC
Confidence 47877 678999652 124566677544 22 11111 12334445578888888899999976
Q ss_pred cCc---hhcHHHHHHHHHH
Q 003472 746 PQT---NHNIIPERRILRE 761 (817)
Q Consensus 746 ~~l---~~~l~~~~~~lg~ 761 (817)
+++ .+++.++++.+.+
T Consensus 310 ~~~~~~~~~~~~na~~L~~ 328 (475)
T PLN03226 310 PEFKAYQKQVKANAAALAN 328 (475)
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 543 4555555555554
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.9e-08 Score=111.09 Aligned_cols=300 Identities=8% Similarity=0.027 Sum_probs=165.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhccccCCCCC------CChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHh
Q 003472 412 GPDATLQIELARDMGYTAARFGHVMFPEN------VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF 485 (817)
Q Consensus 412 ~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~------~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~ 485 (817)
..|-- .+.+.+|+.+.+..+........ ......++.+.++++++....+.+++++|+++|+..+++.+. .
T Consensus 7 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~-~- 83 (373)
T cd06453 7 ATSQK-PQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLG-R- 83 (373)
T ss_pred cccCC-CHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhh-h-
Confidence 35666 78999999888755432110001 123345677788888774212479999999999999998772 1
Q ss_pred hccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCC
Q 003472 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP 565 (817)
Q Consensus 486 t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P 565 (817)
.. ....+|++.+.+|-+ ......... .. .|. .+..++..
T Consensus 84 -~~---------------~~g~~vl~~~~~~~~-~~~~~~~~~-~~------------~g~-----------~~~~v~~~ 122 (373)
T cd06453 84 -AN---------------KPGDEIVTSVMEHHS-NIVPWQQLA-ER------------TGA-----------KLKVVPVD 122 (373)
T ss_pred -cC---------------CCCCEEEECcchhHH-HHHHHHHHH-hh------------cCc-----------EEEEeecC
Confidence 00 012356665544332 211100000 00 000 00111111
Q ss_pred chhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHH
Q 003472 566 EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (817)
Q Consensus 566 ~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~ 645 (817)
... ..| .+.+++.+. +++.+|++.-+ ....|.+.+ +++
T Consensus 123 ~~~-----------~~d------------------~~~l~~~l~--------~~~~~v~~~~~-~~~tG~~~~----~~~ 160 (373)
T cd06453 123 DDG-----------QLD------------------LEALEKLLT--------ERTKLVAVTHV-SNVLGTINP----VKE 160 (373)
T ss_pred CCC-----------CcC------------------HHHHHHHhc--------CCceEEEEeCc-ccccCCcCC----HHH
Confidence 000 000 245666654 14567776654 566777776 799
Q ss_pred HHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCCCCCcceEEEechHHHhhhcCCCcc----ce
Q 003472 646 LVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKL----KA 719 (817)
Q Consensus 646 Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~LggGy~PlsAvl~s~~i~d~~~~~~~~----~~ 719 (817)
|.++|+++|+++|+|++++ +|... + ......+|+++++ |.+++ .-+|.+++++++.+.+...... ..
T Consensus 161 i~~~~~~~~~~li~D~a~~-~~~~~--~--~~~~~~~d~~~~s~~K~~~~--~g~g~~~~~~~~~~~~~~~~~g~~~~~~ 233 (373)
T cd06453 161 IGEIAHEAGVPVLVDGAQS-AGHMP--V--DVQDLGCDFLAFSGHKMLGP--TGIGVLYGKEELLEEMPPYGGGGEMIEE 233 (373)
T ss_pred HHHHHHHcCCEEEEEhhhh-cCcee--e--eccccCCCEEEeccccccCC--CCcEEEEEchHHhhcCCCeecCCCcccc
Confidence 9999999999999999995 44331 1 1112457999888 99876 3468888999988766431100 00
Q ss_pred -eecccC-------C---CCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC---cceEEeeee
Q 003472 720 -LLHGHS-------Y---SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT---VQRVVALGT 785 (817)
Q Consensus 720 -~~h~~T-------~---~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~---V~~VrG~Gl 785 (817)
....++ | +.+..+..+..++++.+++.+. +++.++...+.+++.+ .+++.|. +.+....+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~-~~~~~~~~~~~~~l~~----~l~~~~~~~~~~~~~~~~~ 308 (373)
T cd06453 234 VSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGM-EAIAAHEHELTAYALE----RLSEIPGVRVYGDAEDRAG 308 (373)
T ss_pred ccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHH----HHhcCCCeEEeCCccccCC
Confidence 000001 1 2344555566677888876544 4455555555554444 3444543 223334566
Q ss_pred EEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 786 LCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 786 m~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++.|.+... ....+...+.++||.
T Consensus 309 ~~~~~~~~~-------~~~~i~~~l~~~gi~ 332 (373)
T cd06453 309 VVSFNLEGI-------HPHDVATILDQYGIA 332 (373)
T ss_pred eEEEEECCc-------CHHHHHHHHHHCCEE
Confidence 777776421 345677777778874
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-08 Score=112.44 Aligned_cols=187 Identities=12% Similarity=0.007 Sum_probs=107.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCC
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (817)
+.+++.+.+ .++.+|++-.. +...|.+.+ +++|.++|+++|+++|+|++|. +|.. .+....+ .
T Consensus 114 ~~l~~~i~~-------~~~~~v~i~~~-~~~~G~~~~----~~~i~~~a~~~~~~li~D~~~~-~g~~--~~~~~~~--~ 176 (356)
T cd06451 114 EEIAEALEQ-------HDIKAVTLTHN-ETSTGVLNP----LEGIGALAKKHDALLIVDAVSS-LGGE--PFRMDEW--G 176 (356)
T ss_pred HHHHHHHhc-------cCCCEEEEecc-CCCcccccC----HHHHHHHHHhcCCEEEEeeehh-ccCc--ccccccc--C
Confidence 456666652 23455655454 566788776 8899999999999999999994 6532 1222222 3
Q ss_pred Cceeec--ccccCCCCCcceEEEechHHHhhhcC-CCcccee---------ec---ccCCCCCHHHHHHHHHHHHHhcCc
Q 003472 682 PDIACY--GKLLTGGVIPLAATLATNAVFDSFVG-DSKLKAL---------LH---GHSYSAHALGCAAAAKSIKWFKDP 746 (817)
Q Consensus 682 PDivtl--gK~LggGy~PlsAvl~s~~i~d~~~~-~~~~~~~---------~h---~~T~~gnPla~AAAlA~L~~l~~~ 746 (817)
+|+++. .|.++++ ..+|.++++++.++.+.. ......+ .+ ..+.+.++...+++.++++.+.+.
T Consensus 177 ~d~~~~s~~K~l~~p-~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~ 255 (356)
T cd06451 177 VDVAYTGSQKALGAP-PGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEE 255 (356)
T ss_pred ccEEEecCchhccCC-CCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHh
Confidence 577654 6999876 467889999998877642 0000000 00 122234577778888999888663
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEee-eeEEEEEEecCCCCCCcchHHHHHHHHHHc-CC
Q 003472 747 QTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYCLIELFLYNFLTT-GM 815 (817)
Q Consensus 747 ~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~-Glm~gIel~~~~~~~~~~~~~~~~~~~l~~-Gv 815 (817)
+. +++.++...+.+++.+.|.+. ....+....+. +.+..+.+... .....+...+.++ ||
T Consensus 256 ~~-~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~L~~~~gI 317 (356)
T cd06451 256 GL-ENRWARHRRLAKALREGLEAL--GLKLLAKPELRSPTVTAVLVPEG------VDGDEVVRRLMKRYNI 317 (356)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHc--CCeeccCcccCCCceEEEECCCC------CCHHHHHHHHHHhCCE
Confidence 32 344455555555555544332 22222222222 23333333221 2345677777777 76
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.9e-08 Score=108.61 Aligned_cols=229 Identities=13% Similarity=0.109 Sum_probs=136.7
Q ss_pred CHHHHHHHHHHHHhc-cccCCCCCCChHHHHHHHHHHhhcCCCC-c-ceEEEeCChHHHHHHHHHHHHHHhhcccccccc
Q 003472 418 QIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~~~~~-~-~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~ 494 (817)
.+.+.+++.++++.. ..+....+..+...++++.+.+..+... . +.++++++|++|++.+++... ..
T Consensus 35 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~-----~~----- 104 (378)
T PRK07682 35 PWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAII-----NP----- 104 (378)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhC-----CC-----
Confidence 567888888877642 1121123445666778888876433211 1 369999999999998887661 11
Q ss_pred ccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccc
Q 003472 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (817)
Q Consensus 495 ~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~ 574 (817)
...|+..+-+|++.. ......|.. .++.|...
T Consensus 105 -----------gd~vl~~~p~y~~~~-~~~~~~g~~------------------------------~~~~~~~~------ 136 (378)
T PRK07682 105 -----------GDEVLIVEPSFVSYA-PLVTLAGGV------------------------------PVPVATTL------ 136 (378)
T ss_pred -----------CCEEEEeCCCchhhH-HHHHHcCCE------------------------------EEEeecCC------
Confidence 237888888888532 111121111 00111000
Q ss_pred cccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE-EEccccccCCCcccCCHHHHHHHHHHHhhc
Q 003472 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL-IIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (817)
Q Consensus 575 ~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAv-IvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~ 653 (817)
++ .+. -| .+.+++.+. +++.++ +.-| +.-.|.+. +.+.+++|.++|++|
T Consensus 137 ------~~---~~~--~d--------~~~l~~~~~--------~~~~~v~~~~p--~NPtG~~~-s~~~~~~l~~~~~~~ 186 (378)
T PRK07682 137 ------EN---EFK--VQ--------PAQIEAAIT--------AKTKAILLCSP--NNPTGAVL-NKSELEEIAVIVEKH 186 (378)
T ss_pred ------cc---CCC--CC--------HHHHHhhcC--------cccEEEEEECC--CCCcCcCc-CHHHHHHHHHHHHHc
Confidence 00 000 00 244555543 134455 4455 45566644 788999999999999
Q ss_pred CCcEEEeeeeeccccccccch-hhhcCCCCc---eeecccccC-CCCCcceEEEechHHHhhhcCCCccceeecccCCCC
Q 003472 654 KIPVIFDEVFTGFWRLGVETT-ADLLGCVPD---IACYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSA 728 (817)
Q Consensus 654 GilLI~DEV~TGfGRtG~~~a-~e~~gv~PD---ivtlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~g 728 (817)
|+++|+||++..|...+.... .+..+..+. +.++||.+| .| +.+|.+++++++++.+... ...++++.
T Consensus 187 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lR~G~~~~~~~~i~~l~~~------~~~~~~~~ 259 (378)
T PRK07682 187 DLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTG-WRLGFIAAPVYFSEAMLKI------HQYSMMCA 259 (378)
T ss_pred CcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChh-hhhhhhhcCHHHHHHHHHH------HHhhccCC
Confidence 999999999987755443221 122222222 348999998 68 7889999999999887531 11234556
Q ss_pred CHHHHHHHHHHHH
Q 003472 729 HALGCAAAAKSIK 741 (817)
Q Consensus 729 nPla~AAAlA~L~ 741 (817)
++++.+++.++|+
T Consensus 260 ~~~~q~a~~~~l~ 272 (378)
T PRK07682 260 PTMAQFAALEALR 272 (378)
T ss_pred CHHHHHHHHHHHh
Confidence 7787777777764
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.1e-09 Score=119.20 Aligned_cols=163 Identities=12% Similarity=0.086 Sum_probs=100.1
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC-CC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg-Gy 695 (817)
+..+|++|-. ....|.+.+ +++|.++|+++|+++|+||+++ .+-.+... .+ ..|++ +++|.++| |
T Consensus 146 ~tklV~lesp-~NptG~v~d----l~~I~~la~~~g~~vivD~a~a-~~~~~~pl---~~--g~Div~~S~sK~l~g~g- 213 (386)
T PRK06767 146 NTKLIFVETP-INPTMKLID----LKQVIRVAKRNGLLVIVDNTFC-SPYLQRPL---EL--GCDAVVHSATKYIGGHG- 213 (386)
T ss_pred CceEEEEeCC-CCCCceecC----HHHHHHHHHHcCCEEEEECCCc-ccccCCch---hc--CCcEEEecCcceecCCC-
Confidence 4568888876 666777776 8999999999999999999984 22222211 12 34777 55699987 5
Q ss_pred Ccc-eEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 696 IPL-AATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 696 ~Pl-sAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
.++ |+++++++.++.+..... ...+.+ -+|..+++++..|+.+.. ..++..+++.. +.+.++++
T Consensus 214 ~~~gG~v~~~~~~i~~~~~~~~---~~~g~~--~~~~~a~l~~~~L~tl~~--r~~~~~~~a~~--------la~~L~~~ 278 (386)
T PRK06767 214 DVVAGVTICKTRALAEKIRPMR---KDIGGI--MAPFDAWLLLRGLKTLAV--RMDRHCDNAEK--------IVSFLKNH 278 (386)
T ss_pred CceeEEEEeChHHHHHHHHHHH---HHhCCC--CCHHHHHHHHcCCCcHHH--HHHHHHHHHHH--------HHHHHHcC
Confidence 565 677888876665421100 011221 257777766655544321 11233333333 44456788
Q ss_pred CCcceEE------------eeeeEEEEEEecCCCCCCcchHHHHHHHHHHc
Q 003472 775 RTVQRVV------------ALGTLCAIELQAAGCNAGYCLIELFLYNFLTT 813 (817)
Q Consensus 775 p~V~~Vr------------G~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~ 813 (817)
|.|..|. |.|-|+.|++... .+....|+.++...
T Consensus 279 p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~-----~~~~~~f~~~l~~~ 324 (386)
T PRK06767 279 DAVEGVWYPEGELASRQMKRGGGVISFSIKGG-----KEETQAFINDLHFI 324 (386)
T ss_pred CCccEEECCCcHHHHHhCCCCCceEEEEEcCC-----HHHHHHHHHhCCcc
Confidence 8777665 7789999999633 24456666665433
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.01 E-value=7e-08 Score=109.78 Aligned_cols=191 Identities=12% Similarity=0.099 Sum_probs=114.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCC
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (817)
+.+++.++. ..+++.+|++..+ ....|.+.| +++|.++|+++|+++|+|++|+ +|..- +-.+.+|+.
T Consensus 159 ~~l~~~~~~-----~~~~t~lv~~~~v-~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~-~G~~~--id~~~~gvD 225 (406)
T TIGR01814 159 EDILDTIEK-----NGDDIAVILLSGV-QYYTGQLFD----MAAITRAAHAKGALVGFDLAHA-VGNVP--LDLHDWGVD 225 (406)
T ss_pred HHHHHHHHh-----cCCCeEEEEEecc-ccccceecC----HHHHHHHHHHcCCEEEEEcccc-cCCcc--cccccCCCC
Confidence 345555542 2356789999998 888999998 9999999999999999999995 54432 223344544
Q ss_pred CceeecccccCCCCCcceEEEechHHHhhhcCC-------CccceeecccCC----------CCCHHHHHHHHHHHHHhc
Q 003472 682 PDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-------SKLKALLHGHSY----------SAHALGCAAAAKSIKWFK 744 (817)
Q Consensus 682 PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~-------~~~~~~~h~~T~----------~gnPla~AAAlA~L~~l~ 744 (817)
..+.+.-|.|+|| |-+++.++++..+.+... .....+.+..++ +.|..++++..++|++++
T Consensus 226 ~~~~s~hK~l~g~--pG~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~ 303 (406)
T TIGR01814 226 FACWCTYKYLNAG--PGAGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFD 303 (406)
T ss_pred EEEEcCccccCCC--CCeEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHH
Confidence 4444678999887 335455544433222110 000001111111 235678888888999997
Q ss_pred CcCchhcHHHHHHHHHHHHHHHHHHHHHcCC---Cc--ceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 745 DPQTNHNIIPERRILRELWDLELIQQISSHR---TV--QRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 745 ~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p---~V--~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+ .+++.++...+.+++.+.+.+.....+ ++ .+.+.++.++.|.+. . ....+...+.++||.
T Consensus 304 ~~g-~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~-------~~~~~~~~L~~~gi~ 371 (406)
T TIGR01814 304 QAG-MEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-V-------PGKAVFQALIKRGVI 371 (406)
T ss_pred hcC-HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-C-------CHHHHHHHHHHCCEE
Confidence 644 356667777777776665443211012 12 123345667777765 1 124566667777874
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-08 Score=111.49 Aligned_cols=160 Identities=16% Similarity=0.186 Sum_probs=96.3
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch-hhhcCCCCce--eecccccC-CCCC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPDI--ACYGKLLT-GGVI 696 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a-~e~~gv~PDi--vtlgK~Lg-gGy~ 696 (817)
+.++..| +...|.+.+ .+++.++|+++|+++|+||++.+|. .+..-. ...+ ..-+ -+|+|.+| .| +
T Consensus 161 ~v~~~~p--~nptG~~~~----~~~l~~l~~~~~~~li~De~y~~~~-~~~~~~~~~~~--~~vi~~~S~SK~~g~~G-l 230 (361)
T PRK00950 161 VIFLCTP--NNPTGNLIP----EEDIRKILESTDALVFVDEAYVEFA-EYDYTPLALEY--DNLIIGRTFSKVFGLAG-L 230 (361)
T ss_pred EEEEeCC--CCCCCCCcC----HHHHHHHHHHCCcEEEEECchhhhC-ccchHHHHHhc--CCEEEEEeehHhhcCch-h
Confidence 3444556 566677776 5688999999999999999998773 111111 1111 1112 28899998 67 7
Q ss_pred cceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC
Q 003472 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (817)
Q Consensus 697 PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~ 776 (817)
.+|.+++++++++.+.. ...++..++++.+++.++|+ +.+..++..++.+..++++ .+.+. ..
T Consensus 231 RiG~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l----~~~l~-~~- 293 (361)
T PRK00950 231 RIGYGFVPEWLIDYYMR--------AKTPFSLTRLSQAAAIAALS---DKEYIEKSIEHGIKSREYL----YNELP-FK- 293 (361)
T ss_pred hcchhcCCHHHHHHHHH--------hcCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHH----HhhcC-ee-
Confidence 88889999999887753 22345567777777766663 3333344444443333332 22222 11
Q ss_pred cceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 777 VQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 777 V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+ ....|.++-+++ +. .....+...+.++||+
T Consensus 294 ~--~~~~~~~i~~~~-~~------~~~~~~~~~l~~~gv~ 324 (361)
T PRK00950 294 V--YPSEANFVLVDV-TP------MTAKEFCEELLKRGVI 324 (361)
T ss_pred E--CCCcceEEEEEC-CC------CCHHHHHHHHHHCCEE
Confidence 1 122356666777 21 2345677788888874
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.4e-08 Score=113.65 Aligned_cols=235 Identities=17% Similarity=0.110 Sum_probs=143.6
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
+.++...+|+++|+++.+. +.+++++||+.|+..++.... .. ...||..+. .||.
T Consensus 67 ~~~p~~~~le~~lA~l~g~---~~al~~~sG~~Ai~~~l~all-----~~----------------Gd~Vl~~~~-~~~~ 121 (403)
T PRK07810 67 YGNPTVSMFEERLRLIEGA---EACFATASGMSAVFTALGALL-----GA----------------GDRLVAARS-LFGS 121 (403)
T ss_pred CCCchHHHHHHHHHHHhCC---CcEEEECChHHHHHHHHHHHh-----CC----------------CCEEEEccC-Ccch
Confidence 4567788999999999873 689999999999999886552 11 124555544 4554
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
+.....-. .. ..|.- +..++ .+|
T Consensus 122 t~~~~~~~-~~------------~~G~~-----------v~~vd----------------~~d----------------- 144 (403)
T PRK07810 122 CFVVCNEI-LP------------RWGVE-----------TVFVD----------------GED----------------- 144 (403)
T ss_pred HHHHHHHH-HH------------HcCcE-----------EEEEC----------------CCC-----------------
Confidence 43321100 00 00000 00000 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.+. .++.+|++|.. ..-.|.+.+ +++|.++|+++|+++|+||++. .+-.... . ..|
T Consensus 145 -~~~l~~ai~--------~~tklV~~esp-~Nptg~v~d----l~~I~~la~~~g~~vivD~a~a-~~~~~~~--~-~~g 206 (403)
T PRK07810 145 -LSQWEEALS--------VPTQAVFFETP-SNPMQSLVD----IAAVSELAHAAGAKVVLDNVFA-TPLLQRG--L-PLG 206 (403)
T ss_pred -HHHHHHhcC--------cCceEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCC-ccccCCh--h-hcC
Confidence 144666654 24578999986 666777775 9999999999999999999984 2222111 1 123
Q ss_pred CCCcee--ecccccCC-CCCcc-eEEEechHHHhh-hcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHH
Q 003472 680 CVPDIA--CYGKLLTG-GVIPL-AATLATNAVFDS-FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (817)
Q Consensus 680 v~PDiv--tlgK~Lgg-Gy~Pl-sAvl~s~~i~d~-~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~ 754 (817)
.|++ .+.|.++| | -.+ |+++++++.... +.. +........+|..++.++..|+.+.. ..++..+
T Consensus 207 --aDivv~S~tK~l~g~g-~~~gG~v~~~~~~~~~~l~~------~~~~~g~~~s~~~a~l~l~~L~tl~~--R~~~~~~ 275 (403)
T PRK07810 207 --ADVVVYSGTKHIDGQG-RVLGGAILGDREYIDGPVQK------LMRHTGPALSAFNAWVLLKGLETLAL--RVRHSNA 275 (403)
T ss_pred --CcEEEccCCceecCCc-CceeEEEEeChHHHHHHHHH------HHHHhCCCCCHHHHHHHHhccCcHHH--HHHHHHH
Confidence 5877 56899976 4 234 667777765442 211 11122235689999998888887743 1122223
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcceEE------------------eeeeEEEEEEec
Q 003472 755 ERRILRELWDLELIQQISSHRTVQRVV------------------ALGTLCAIELQA 793 (817)
Q Consensus 755 ~~~~lg~~l~~~l~~~l~~~p~V~~Vr------------------G~Glm~gIel~~ 793 (817)
++.+ +.+.++++|.|..|. |-|.|+.|+|..
T Consensus 276 ~a~~--------~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~ 324 (403)
T PRK07810 276 SALR--------IAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDA 324 (403)
T ss_pred HHHH--------HHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence 3322 334567788888777 889999999964
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.2e-08 Score=110.70 Aligned_cols=258 Identities=12% Similarity=0.043 Sum_probs=149.9
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCC-------ChHHHHHHHHHHhhcCCCCcceEEEeCChHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-------YEPALECAELLLQGVGKGWASRAYFSDNGST 472 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~-------~~~~~eLae~L~~~~~~~~~~~v~f~~SGse 472 (817)
.|||..+ .+-- ++.|.+|+.+.+..... ...... .+...++.++|+++++.. .+.++|+++|++
T Consensus 5 ~yld~aa------~~~~-~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~~~g~t~ 75 (402)
T TIGR02006 5 IYLDYAA------TTPV-DPRVAEKMMPYLTEKFG-NPASRSHSFGWEAEEAVENARNQVAELIGAD-SREIVFTSGATE 75 (402)
T ss_pred EEeeCCc------CCCC-CHHHHHHHHHHHHhcCC-CCChhhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHH
Confidence 6888665 2444 89999999887754321 111111 133556677788888743 357999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCc
Q 003472 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (817)
Q Consensus 473 A~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (817)
|++.+++.+ ..+.... ...||.. ...|.+...+...... . |.
T Consensus 76 a~~~~l~~l-~~~~~~~----------------g~~Vi~~-~~~h~s~~~~~~~~~~----~----------g~------ 117 (402)
T TIGR02006 76 SNNLAIKGI-AHFYKSK----------------GNHIITS-KTEHKAVLDTCRYLER----E----------GF------ 117 (402)
T ss_pred HHHHHHHHH-HHhhcCC----------------CCEEEEC-CCccHHHHHHHHHHHh----c----------CC------
Confidence 999999877 3221111 1244444 4556654433221100 0 00
Q ss_pred ccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003472 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (817)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~ 632 (817)
.+..++..... ..| .+.+++.+. ++..+|++..+ +..
T Consensus 118 -----~v~~v~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~lv~v~~~-~n~ 154 (402)
T TIGR02006 118 -----EVTYLPPKSNG-----------LID------------------LEELKAAIR--------DDTILVSIMHV-NNE 154 (402)
T ss_pred -----EEEEEccCCCC-----------cCC------------------HHHHHHhcC--------CCCEEEEEECC-CcC
Confidence 00111111000 001 144555553 23567888886 888
Q ss_pred CCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCCCCCcceEEEechHHHhh
Q 003472 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDS 710 (817)
Q Consensus 633 gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~LggGy~PlsAvl~s~~i~d~ 710 (817)
.|.+.+ +++|.++|+++|+++|+|++|+ +|... .+..+..+|+++++ |.+| . ..+|+++++++..+.
T Consensus 155 tG~~~~----~~~I~~l~~~~g~~livD~a~a-~g~~~----~~~~~~~~D~~~~s~~K~~g-p-~G~G~l~~~~~~~~~ 223 (402)
T TIGR02006 155 IGVIQD----IAAIGEICRERKVFFHVDAAQS-VGKIP----INVNELKVDLMSISGHKIYG-P-KGIGALYVRRKPRVR 223 (402)
T ss_pred ceeccc----HHHHHHHHHHcCCEEEEEcchh-cCCcc----cCccccCCCEEEEehhhhcC-C-CceEEEEEccCCCCC
Confidence 898887 8999999999999999999995 54331 22224578999999 9654 2 237888888765443
Q ss_pred hcCCCccceeecc------c-CCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHH
Q 003472 711 FVGDSKLKALLHG------H-SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLE 766 (817)
Q Consensus 711 ~~~~~~~~~~~h~------~-T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~ 766 (817)
+.. ..++ . ..+-+...+++..++|+.+++ + .+...++.+.+.+++.+.
T Consensus 224 ~~~------~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~-~-~~~~~~~~~~l~~~l~~~ 278 (402)
T TIGR02006 224 LEA------LIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKE-E-MAQDTAHVLALRDRLLNG 278 (402)
T ss_pred CCc------eecCCCccCCccCCCccHHHHHHHHHHHHHHHH-h-HHHHHHHHHHHHHHHHHH
Confidence 321 1111 1 123456666666688888864 2 344455555666554443
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=98.96 E-value=4e-08 Score=108.67 Aligned_cols=166 Identities=14% Similarity=0.122 Sum_probs=107.6
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCc-ee--ecccccC-CCCC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA--CYGKLLT-GGVI 696 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PD-iv--tlgK~Lg-gGy~ 696 (817)
+.+++.|- .-.|.++ +.+.+++|.++|+++|+++|+||++.+|...... .+..+-.++ |+ +++|.+| .| +
T Consensus 128 ~v~i~~p~--NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~--~~~~~~~~~~i~~~S~SK~~g~~G-~ 201 (330)
T TIGR01140 128 VLVLCNPN--NPTGRLI-PPETLLALAARLRARGGWLVVDEAFIDFTPDASL--APQAARFPGLVVLRSLTKFFGLAG-L 201 (330)
T ss_pred EEEEeCCC--CCCCCCC-CHHHHHHHHHHhHhcCCEEEEECcccccCCccch--hhHhccCCCEEEEEecchhhcCch-h
Confidence 56677773 3445544 8899999999999999999999999877432111 122222233 43 8999998 78 7
Q ss_pred cceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC
Q 003472 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (817)
Q Consensus 697 PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~ 776 (817)
.+|.+++++++++.+... ..++..++++.+++.+.|+ +++..+++.++-+...+ .+.+.+++++.
T Consensus 202 R~G~i~~~~~~~~~l~~~--------~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~----~l~~~L~~~~~ 266 (330)
T TIGR01140 202 RLGFVVAHPALLARLREA--------LGPWTVNGPARAAGRAALA---DTAWQAATRARLAAERA----RLAALLARLGG 266 (330)
T ss_pred hhhheeCCHHHHHHHHhc--------CCCCCchHHHHHHHHHHHh---chHHHHHHHHHHHHHHH----HHHHHHHhCCC
Confidence 999999999999887532 2345667777766665554 43333333433333333 45556666665
Q ss_pred cceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 777 VQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 777 V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.-..+.|.++-+++.+ ...+...++++||.
T Consensus 267 ~~~~~~~~~f~~~~~~~---------~~~l~~~l~~~gi~ 297 (330)
T TIGR01140 267 LEVVGGTALFLLVRTPD---------AAALHEALARRGIL 297 (330)
T ss_pred ceECCCCCeEEEEEcCC---------HHHHHHHHHHCCEE
Confidence 43334567777776542 24677888888873
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.4e-08 Score=108.31 Aligned_cols=261 Identities=14% Similarity=0.058 Sum_probs=148.1
Q ss_pred eeeccccccccCCCCCCCHHHHHHHHHHHHhc-cccCCCCC----CChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHH
Q 003472 401 QFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPEN----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (817)
Q Consensus 401 ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~-~~~~~~~~----~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E 475 (817)
|||..+ .+-- ++.|.+|+.+.+... +....... ..+...++.++++++++.. .+.+.|+++|++|+.
T Consensus 2 yld~aa------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~i~~t~~~t~a~~ 73 (379)
T TIGR03402 2 YLDNNA------TTRV-DPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAE-PDEIIFTSGGTESDN 73 (379)
T ss_pred cCCCcC------CCCC-CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCcHHHHHH
Confidence 666544 3455 899999999887643 11110000 1234556778888888753 357999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccc
Q 003472 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (817)
Q Consensus 476 ~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (817)
.|++.+. ... +++..||.....|++. ......-.. .|.
T Consensus 74 ~al~~~~-~~~-----------------~~~~~vv~~~~~~~s~-~~~~~~~~~--------------~G~--------- 111 (379)
T TIGR03402 74 TAIKSAL-AAQ-----------------PEKRHIITTAVEHPAV-LSLCQHLEK--------------QGY--------- 111 (379)
T ss_pred HHHHHHH-Hhc-----------------CCCCeEEEcccccHHH-HHHHHHHHH--------------cCC---------
Confidence 9999872 211 1123566656655542 111111000 000
Q ss_pred cCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003472 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (817)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~ 635 (817)
.+..++.+... ..| .+.+++.++ +++..+++.-+ +...|.
T Consensus 112 --~v~~v~~~~~g-----------~~~------------------~~~l~~~i~--------~~~~lv~i~~~-~n~tG~ 151 (379)
T TIGR03402 112 --KVTYLPVDEEG-----------RLD------------------LEELRAAIT--------DDTALVSVMWA-NNETGT 151 (379)
T ss_pred --EEEEEccCCCC-----------cCC------------------HHHHHHhcC--------CCcEEEEEEcc-cCCeee
Confidence 00111111000 001 145565554 23466777776 778898
Q ss_pred ccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCCCCCcceEEEechHHHhhhcC
Q 003472 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVG 713 (817)
Q Consensus 636 ~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~LggGy~PlsAvl~s~~i~d~~~~ 713 (817)
+.+ +++|.++|+++|+++|+|++|+ +|.. -.+......|+++++ | +.|. ..+|++.++++.. +..
T Consensus 152 ~~~----~~~I~~l~~~~g~~vivD~~~~-~g~~----~~~~~~~~~D~~~~s~~K-~~gp-~G~g~l~v~~~~~--~~p 218 (379)
T TIGR03402 152 IFP----IEEIGEIAKERGALFHTDAVQA-VGKI----PIDLKEMNIDMLSLSGHK-LHGP-KGVGALYIRKGTR--FRP 218 (379)
T ss_pred ccc----HHHHHHHHHHcCCEEEEECccc-cccc----ccCcccCCCCEEEEcHHH-cCCC-CceEEEEECCCCC--CCC
Confidence 887 7899999999999999999995 4422 112223468999999 9 6653 3477887887641 110
Q ss_pred CCcccee-ec-ccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHH
Q 003472 714 DSKLKAL-LH-GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (817)
Q Consensus 714 ~~~~~~~-~h-~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l 767 (817)
. ..... .. -...+.|..+..+..++++++.+ ..+++.++.+.+.+++.+.+
T Consensus 219 ~-~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~--~~~~~~~~~~~l~~~l~~~l 271 (379)
T TIGR03402 219 L-LRGGHQERGRRAGTENVPGIVGLGKAAELATE--HLEEENTRVRALRDRLEAGL 271 (379)
T ss_pred c-ccCCccCCCcCCCCccHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 00 01223466777777788888754 23555566666666555443
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-07 Score=105.98 Aligned_cols=179 Identities=12% Similarity=0.078 Sum_probs=101.4
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-chhhh--cCCC-Ccee--ecccccC-C
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADL--LGCV-PDIA--CYGKLLT-G 693 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a~e~--~gv~-PDiv--tlgK~Lg-g 693 (817)
+.++..| +.-.|.+. +.+-+++|.++|++||+++|+||++..+.-.|.. ..... .+.. .+++ +++|.+| .
T Consensus 167 ~v~~~~p--~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~ 243 (393)
T PRK05764 167 ALILNSP--SNPTGAVY-SPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMT 243 (393)
T ss_pred EEEEECC--CCCCCccc-CHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCc
Confidence 3455556 34456654 6788999999999999999999999765222321 11111 1222 2333 6999998 7
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +.+|.+++++++++.+... ....+...++++..++.+.|+. .++..+++.+.-+...+ .+.+.+++
T Consensus 244 G-~RiG~i~~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~----~l~~~L~~ 310 (393)
T PRK05764 244 G-WRLGYAAGPKELIKAMSKL------QSHSTSNPTSIAQYAAVAALNG--PQDEVEEMRQAFEERRD----LMVDGLNE 310 (393)
T ss_pred c-ceeEEEecCHHHHHHHHHH------HhhcccCCChHHHHHHHHHHcC--ChHHHHHHHHHHHHHHH----HHHHHHhh
Confidence 8 7899999999998877421 1123445678888877777752 21222223322222222 34445555
Q ss_pred CCCcceEEeee-eEEEEEEecCCCCCCcchHHHHHHHHH-HcCCC
Q 003472 774 HRTVQRVVALG-TLCAIELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~G-lm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv~ 816 (817)
++.+.-.+..| .++-+.+.......+ .....+...++ ++||.
T Consensus 311 ~~g~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~ 354 (393)
T PRK05764 311 IPGLECPKPEGAFYVFPNVSKLLGKSI-TDSLEFAEALLEEAGVA 354 (393)
T ss_pred CCCCcccCCCcceEEEEeccccccccc-CCHHHHHHHHHHhCCEE
Confidence 64433334444 455556654310000 12345555655 46764
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.1e-08 Score=109.11 Aligned_cols=173 Identities=16% Similarity=0.103 Sum_probs=103.5
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCc---eeecccccC-CCC
Q 003472 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD---IACYGKLLT-GGV 695 (817)
Q Consensus 620 iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PD---ivtlgK~Lg-gGy 695 (817)
+.+|++... +.-.|.+. +++.+++|.++|++||+++|+||++.++...+.... .....+. +-+++|.+| .|
T Consensus 154 ~kli~i~~p-~NPtG~~~-~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s--~~~~~~~~I~~~s~SK~~~~~G- 228 (373)
T PRK07324 154 TKLICINNA-NNPTGALM-DRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPS--IADLYEKGISTNSMSKTYSLPG- 228 (373)
T ss_pred CcEEEEeCC-CCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCC--hhhccCCEEEEecchhhcCCcc-
Confidence 344555432 44456554 788999999999999999999999988754333111 1112223 238999998 68
Q ss_pred CcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 696 ~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
+-+|.+++++++++.+... ....|++.++++..+|..+|+.. +...++..+. +.+ -++.+.+.+++++
T Consensus 229 ~RiG~i~~~~~li~~~~~~------~~~~~~~~~~~~q~~a~~~l~~~--~~~l~~~~~~---~~~-~~~~l~~~l~~~~ 296 (373)
T PRK07324 229 IRVGWIAANEEVIDILRKY------RDYTMICAGVFDDMLASLALEHR--DAILERNRKI---VRT-NLAILDEWVAKEP 296 (373)
T ss_pred ceeEEEecCHHHHHHHHHH------hCcEEecCChHHHHHHHHHHcCH--HHHHHHHHHH---HHH-HHHHHHHHHhcCC
Confidence 7899999999998887532 23345677888888777776421 1112222222 222 1223445566666
Q ss_pred CcceEEeeeeE-EEEEEecCCCCCCcchHHHHHHHHH-HcCC
Q 003472 776 TVQRVVALGTL-CAIELQAAGCNAGYCLIELFLYNFL-TTGM 815 (817)
Q Consensus 776 ~V~~VrG~Glm-~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv 815 (817)
.+..++..|.+ .-+.+... .....|..+++ +.||
T Consensus 297 ~~~~~~p~gg~~~~i~~~~~------~~~~~~~~~ll~~~gv 332 (373)
T PRK07324 297 RVSYVKPKAVSTSFVKLDVD------MPSEDFCLKLLKETGV 332 (373)
T ss_pred CceEECCCceEEEEEEeCCC------CCHHHHHHHHHHhcCE
Confidence 65556655543 34444322 23455667765 4576
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.1e-08 Score=107.00 Aligned_cols=207 Identities=11% Similarity=0.053 Sum_probs=120.6
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCC-----CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhcc
Q 003472 414 DATLQIELARDMGYTAARFGHVMFPE-----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488 (817)
Q Consensus 414 Gh~~hP~V~~Ai~~q~~~~~~~~~~~-----~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~ 488 (817)
|+- .|++.+++.+....++...... ..++...++.+++++++| .+.++++++|++|+..++.... .
T Consensus 11 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g---~~~i~~~~g~t~al~~~l~~~~-----~ 81 (361)
T cd06452 11 GRL-TPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLG---MDEARVTPGAREGKFAVMHSLC-----E 81 (361)
T ss_pred CCC-CHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcC---CceEEEeCCHHHHHHHHHHHhc-----C
Confidence 556 7777777776664333322111 124668899999999988 3789999999999999887651 1
Q ss_pred ccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchh
Q 003472 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWL 568 (817)
Q Consensus 489 ~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~ 568 (817)
+ ..+|+.-..+|.+ ...++...|.. +..++....
T Consensus 82 ~----------------gd~Vl~~~~~~~~-~~~~~~~~g~~----------------------------~~~v~~~~~- 115 (361)
T cd06452 82 K----------------GDWVVVDGLAHYT-SYVAAERAGLN----------------------------VREVPNTGH- 115 (361)
T ss_pred C----------------CCEEEEcCCcchH-HHHHHHhcCCE----------------------------EEEEecCCC-
Confidence 1 1245554444433 32222211110 001111000
Q ss_pred hhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHH
Q 003472 569 YSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVK 648 (817)
Q Consensus 569 ~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~ 648 (817)
++. ..| .+.+++.+++.. .....++.+|++.-. ....|...+ +++|.+
T Consensus 116 -------~~~-~~d------------------~~~l~~~l~~~~-~~~~~~~~lv~l~~p-~n~tG~~~~----~~~i~~ 163 (361)
T cd06452 116 -------PEY-HIT------------------PEGYAEVIEEVK-DEFGKPPALALLTHV-DGNYGNLHD----AKKIAK 163 (361)
T ss_pred -------CCc-ccC------------------HHHHHHHHHHHh-hccCCCceEEEEECC-CCCCeeecc----HHHHHH
Confidence 000 001 134555554210 000124556666554 555676554 899999
Q ss_pred HHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCCCCCcceEEEechHHHhhhcC
Q 003472 649 ECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVG 713 (817)
Q Consensus 649 Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~LggGy~PlsAvl~s~~i~d~~~~ 713 (817)
+|+++|+++|+||++. +|... +....+| .|++ +++|.++++ .++|.+++++++++.+..
T Consensus 164 ~~~~~~~~vivD~a~~-~g~~~--~~~~~~~--~d~~~~s~~K~l~~~-~~~G~l~~~~~~~~~l~~ 224 (361)
T cd06452 164 VCHEYGVPLLLNGAYT-VGRMP--VSGKELG--ADFIVGSGHKSMAAS-APIGVLATTEEWADIVFR 224 (361)
T ss_pred HHHHcCCeEEEECCcc-cCCcC--CCHHHcC--CCEEEecCCccccCC-CCeEEEEECHHHHHHHhc
Confidence 9999999999999994 43321 2223344 3655 778999877 589999999999888743
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-08 Score=114.98 Aligned_cols=163 Identities=12% Similarity=0.069 Sum_probs=108.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.| .+.+++++||++|+..++.... .. ...||.....|+|.
T Consensus 54 ~~~p~~~~le~~lA~l~g---~~~~v~~~sG~~Ai~~al~~l~-----~~----------------Gd~Vl~~~~~y~~t 109 (418)
T TIGR01326 54 LMNPTTDVLEQRIAALEG---GVAALAVASGQAAITYAILNLA-----QA----------------GDNIVSSSYLYGGT 109 (418)
T ss_pred CCChhHHHHHHHHHHHhC---CCeEEEEccHHHHHHHHHHHHh-----CC----------------CCEEEEECCCcHHH
Confidence 456778899999999987 3689999999999999998762 11 13678888888763
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
. ....-. .. ..| ......| .+|
T Consensus 110 ~-~~~~~~-~~------------~~G-------------~~v~~v~--------------~~d----------------- 131 (418)
T TIGR01326 110 Y-NLFKHT-LK------------RLG-------------IEVRFVD--------------PDD----------------- 131 (418)
T ss_pred H-HHHHHH-HH------------HcC-------------cEEEEEC--------------CCC-----------------
Confidence 2 211000 00 000 0000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.+. +++.+|++|.. ..-.|.+.+ +++|.++|+++|+++|+||++. .|. ....+.
T Consensus 132 -~~~l~~~l~--------~~t~~V~le~p-~NPtg~v~d----l~~I~~la~~~~i~livD~t~~-~~~-----~~~~l~ 191 (418)
T TIGR01326 132 -PEEFEKAID--------ENTKAVFAETI-GNPAINVPD----IEAIAEVAHAHGVPLIVDNTFA-TPY-----LCRPID 191 (418)
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-hhh-----cCCchh
Confidence 144565554 24678999986 666677765 8999999999999999999984 321 122233
Q ss_pred CCCcee--ecccccCC-CCCcceEEEech
Q 003472 680 CVPDIA--CYGKLLTG-GVIPLAATLATN 705 (817)
Q Consensus 680 v~PDiv--tlgK~Lgg-Gy~PlsAvl~s~ 705 (817)
..+|++ +++|.++| | ..+|++++++
T Consensus 192 ~g~Divv~S~sK~l~g~G-~~lGg~v~~~ 219 (418)
T TIGR01326 192 HGADIVVHSATKYIGGHG-TAIGGVIVDG 219 (418)
T ss_pred cCCeEEEECccccccCCc-cceEEEEEec
Confidence 457987 78999998 7 7899888865
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.5e-08 Score=113.03 Aligned_cols=148 Identities=15% Similarity=0.119 Sum_probs=88.2
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCCCCC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVI 696 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~LggGy~ 696 (817)
++.+|++|.. ...-|.+.+ +++|.++|+++|+++|+||++. .+..... .....|++ .++|.++|.-.
T Consensus 146 ~tklV~ie~p-~NptG~v~d----l~~I~~la~~~gi~livD~t~~-~~~~~~p-----l~~g~Divv~S~sK~~~g~g~ 214 (390)
T PRK08133 146 NTKLFFLETP-SNPLTELAD----IAALAEIAHAAGALLVVDNCFC-TPALQQP-----LKLGADVVIHSATKYLDGQGR 214 (390)
T ss_pred CCeEEEEECC-CCCCCCcCC----HHHHHHHHHHcCCEEEEECCCc-ccccCCc-----hhhCCcEEEeecceeecCCcc
Confidence 4578889876 666677765 8999999999999999999984 2111111 11235877 56899976214
Q ss_pred cc-eEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 697 PL-AATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 697 Pl-sAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
.+ |++++++++++.+... ........+|..+..++..++.+.. ..++..+++..+. +.++++|
T Consensus 215 ~~GG~vv~~~~~~~~~~~~------~~~~g~~~~~~~a~~~l~gl~tl~~--R~~~~~~~a~~la--------~~L~~~p 278 (390)
T PRK08133 215 VLGGAVVGSKELMEEVFGF------LRTAGPTLSPFNAWVFLKGLETLSL--RMEAHSANALALA--------EWLEAHP 278 (390)
T ss_pred eEeEEEEcCHHHHHHHHHH------HHHhCCCCCHHHHHHHHcccchHHH--HHHHHHHHHHHHH--------HHHHhCC
Confidence 55 5566777766544211 1122234567777666666554422 1122333333333 3344444
Q ss_pred CcceE------------------EeeeeEEEEEEec
Q 003472 776 TVQRV------------------VALGTLCAIELQA 793 (817)
Q Consensus 776 ~V~~V------------------rG~Glm~gIel~~ 793 (817)
.|..| .|.|.|+.|+|..
T Consensus 279 ~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~ 314 (390)
T PRK08133 279 GVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKG 314 (390)
T ss_pred CeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcC
Confidence 43322 4778899999963
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.5e-08 Score=112.43 Aligned_cols=249 Identities=15% Similarity=0.080 Sum_probs=149.1
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.+ .+.+++++||++|+..++.... .. ...||..+..||+.
T Consensus 47 ~gnPt~~~lE~~lA~l~g---~~~~~~~~sG~~Ai~~al~all-----~~----------------GD~Vl~~~~~y~~t 102 (377)
T TIGR01324 47 RGTLTHFALQDAMCELEG---GAGCYLYPSGLAAVTNSILAFV-----KA----------------GDHVLMVDSAYEPT 102 (377)
T ss_pred CCCccHHHHHHHHHHHhC---CCcEEEECcHHHHHHHHHHHhc-----CC----------------CCEEEEcCCCcHHH
Confidence 346778899999999887 3689999999999999997551 11 13677788888874
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
....-... .. .+. . +.+.|.+ +
T Consensus 103 ~~~~~~~~--~~------------~gi--------------~----------------v~~~d~~-------~------- 124 (377)
T TIGR01324 103 RYFCDIVL--KR------------MGV--------------D----------------ITYYDPL-------I------- 124 (377)
T ss_pred HHHHHHHH--Hh------------cCc--------------E----------------EEEECCC-------C-------
Confidence 22110000 00 000 0 0011110 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.+. .+..+|++|.. ....|.+.+ +++|.++|+++|+++|+||+|. +|-.+.. ..
T Consensus 125 -~e~l~~~i~--------~~tklV~lesp-~Np~g~~~d----l~~I~~la~~~g~~livD~t~a-~g~~~~p-----l~ 184 (377)
T TIGR01324 125 -GEDIATLIQ--------PNTKVLFLEAP-SSITFEIQD----IPAIAKAARNPGIVIMIDNTWA-AGLLFKP-----LE 184 (377)
T ss_pred -HHHHHHhcC--------CCceEEEEECC-CCCCCcHHH----HHHHHHHHHHcCCEEEEECCCc-cccccCc-----cc
Confidence 034555553 24668999986 566665554 9999999999999999999994 4434332 22
Q ss_pred CCCceeec--ccccCCC-CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHH
Q 003472 680 CVPDIACY--GKLLTGG-VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (817)
Q Consensus 680 v~PDivtl--gK~LggG-y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~ 756 (817)
...|+++. .|.++|. =+-.|+++++++.++.+... ...+...-+|..|...+..|+.+.- ..++..+++
T Consensus 185 ~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~------~~~~G~~l~p~~a~~~~rgl~tl~~--R~~~~~~~a 256 (377)
T TIGR01324 185 HGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREH------SYLMGQMVDADDAYTTLRGLRTLGV--RLKQHQESS 256 (377)
T ss_pred cCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHH------HHHhCCCCCHHHHHHHHhhhhhHHH--HHHHHHHHH
Confidence 35688854 9999862 13356777888776655311 1122334567777777666665521 234555555
Q ss_pred HHHHHHHHHHHHHHHHcCCCcceE------------------EeeeeEEEEEEecCCCCCCcchHHHHHHHH
Q 003472 757 RILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQAAGCNAGYCLIELFLYNF 810 (817)
Q Consensus 757 ~~lg~~l~~~l~~~l~~~p~V~~V------------------rG~Glm~gIel~~~~~~~~~~~~~~~~~~~ 810 (817)
.++.+.| ++||.|..| .|.|-|+.|++...+ .+....|+..+
T Consensus 257 ~~la~~L--------~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~----~~~~~~~~~~l 316 (377)
T TIGR01324 257 LAIAKWL--------SEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLT----QKQVHAFLDHL 316 (377)
T ss_pred HHHHHHH--------HhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCC----HHHHHHHHHhC
Confidence 5555433 344443322 367899999996421 24455565554
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-08 Score=113.58 Aligned_cols=149 Identities=12% Similarity=0.086 Sum_probs=93.8
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC-CC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg-Gy 695 (817)
+..+|++|-. ....|.+.+ +++|.++|+++|+++|+||++. .+-.+.. .+...|++ +++|.+|+ |
T Consensus 144 ~tklV~le~p-~Np~G~v~d----l~~I~~la~~~gi~livD~a~a-~~~~~~~-----~~~g~Divv~S~sK~lgg~g- 211 (391)
T TIGR01328 144 NTKIVYFETP-ANPTMKLID----MERVCRDAHSQGVKVIVDNTFA-TPMLTNP-----VALGVDVVVHSATKYIGGHG- 211 (391)
T ss_pred CCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCc-hhccCCc-----hhcCCCEEEccccccccCCC-
Confidence 4568889976 566677665 8999999999999999999984 3223322 23356776 56899986 4
Q ss_pred Cc-ceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 696 IP-LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 696 ~P-lsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
.+ .|++++++++++.+..... . ...+..-+|..|+.++..|+.+.. ..++..+++..+.+. ++++
T Consensus 212 ~~~gG~v~~~~~li~~l~~~~~--~--~~~g~~l~~~~a~l~l~~L~tl~~--r~~~~~~na~~la~~--------L~~~ 277 (391)
T TIGR01328 212 DVVAGLICGKAELLQQIRMVGI--K--DMTGSVISPFDAWLILRGLKTLNI--RMKRHSENAMKVAEY--------LKSH 277 (391)
T ss_pred CceEEEEEcCHHHHHHHHHHHH--H--hCCCCCCCcHHHHHHHhCcCcHHH--HHHHHHHHHHHHHHH--------HHhC
Confidence 34 3667788888776642100 0 011234578888887776655532 233444445554443 3344
Q ss_pred CCcce------------------EEeeeeEEEEEEec
Q 003472 775 RTVQR------------------VVALGTLCAIELQA 793 (817)
Q Consensus 775 p~V~~------------------VrG~Glm~gIel~~ 793 (817)
|.|.. -+|-|.|+.|++..
T Consensus 278 p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~ 314 (391)
T TIGR01328 278 PAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKG 314 (391)
T ss_pred CCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCC
Confidence 43322 34678899999963
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=98.91 E-value=3e-08 Score=113.33 Aligned_cols=172 Identities=19% Similarity=0.247 Sum_probs=109.0
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.+ .+.+++++||++|+..++.... +.| ..||.....|.+
T Consensus 73 ~~~Pt~~~LE~~lA~l~g---~~~~l~~~sG~~Ai~~al~al~-----~~G----------------D~Vl~~~~~Y~~- 127 (418)
T PLN02242 73 HFNPTVLNLGRQMAALEG---TEAAYCTASGMSAISSVLLQLC-----SSG----------------GHVVASNTLYGG- 127 (418)
T ss_pred CCChhHHHHHHHHHHHhC---CCeEEEEccHHHHHHHHHHHHh-----CCC----------------CEEEEcCCcHHH-
Confidence 457889999999999987 3688899999999999998662 111 256655555532
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
+...+..... +. .|. . +.|.+.. |
T Consensus 128 ~~~~~~~~~~---~~---------~G~-------------~-----------------~~~~d~~-------d------- 151 (418)
T PLN02242 128 THALLAHFLP---RK---------CNI-------------T-----------------TTFVDIT-------D------- 151 (418)
T ss_pred HHHHHHHhhh---hc---------cCc-------------e-----------------EEEcCCC-------C-------
Confidence 2221110000 00 000 0 0011110 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.+. +.+..+|++|.. ....|.+.+ +++|.++|+++|+++|+||+++.+ .... ..+|
T Consensus 152 -~e~l~~~i~-------~~~tklV~lesp-~NPtG~v~d----l~~I~~la~~~gi~livDea~~~~-~~~~----~~~g 213 (418)
T PLN02242 152 -LEAVKKAVV-------PGKTKVLYFESI-SNPTLTVAD----IPELARIAHEKGVTVVVDNTFAPM-VLSP----ARLG 213 (418)
T ss_pred -HHHHHHhcC-------cCCCEEEEEecC-CCCCCcccC----HHHHHHHHHHhCCEEEEECCCCcc-CCCH----HHcC
Confidence 144665554 224678999986 777777765 899999999999999999999643 2221 1223
Q ss_pred CCCcee--ecccccCCCCCc-ceEEEechHHHhhhc
Q 003472 680 CVPDIA--CYGKLLTGGVIP-LAATLATNAVFDSFV 712 (817)
Q Consensus 680 v~PDiv--tlgK~LggGy~P-lsAvl~s~~i~d~~~ 712 (817)
.|++ +++|.++|+--. .|++++++++++.+.
T Consensus 214 --~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~ 247 (418)
T PLN02242 214 --ADVVVHSISKFISGGADIIAGAVCGPAELVNSMM 247 (418)
T ss_pred --CcEEEEeCccccCCCCCceEEEEEcCHHHHHHHH
Confidence 5776 789999863245 477888888887764
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.2e-08 Score=113.49 Aligned_cols=161 Identities=14% Similarity=0.153 Sum_probs=106.4
Q ss_pred CChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCc
Q 003472 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (817)
Q Consensus 441 ~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t 520 (817)
.++...+|+++|+++.|. +.+++++||+.|++.+++... +. ...||+....|+|..
T Consensus 61 ~~p~~~~le~~lA~l~g~---~~al~~~SG~~Ai~~al~all-----~p----------------Gd~VIv~~~~y~~t~ 116 (427)
T PRK05994 61 TNPTNAVLEERVAALEGG---TAALAVASGHAAQFLVFHTLL-----QP----------------GDEFIAARKLYGGSI 116 (427)
T ss_pred CCccHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHHh-----CC----------------CCEEEEecCcchhHH
Confidence 466778999999999873 579999999999999998762 11 136888888887642
Q ss_pred cccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHH
Q 003472 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (817)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~ 600 (817)
.. +... ....|.- +..++ .+|
T Consensus 117 ~~-~~~~-------------~~~~G~~-----------v~~vd----------------~~d------------------ 137 (427)
T PRK05994 117 NQ-FGHA-------------FKSFGWQ-----------VRWAD----------------ADD------------------ 137 (427)
T ss_pred HH-HHHH-------------HHhcCcE-----------EEEEC----------------CCC------------------
Confidence 11 0000 0000000 00000 011
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC
Q 003472 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (817)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv 680 (817)
.+.+++.+. .++.+|++|.. ....|.+.+ +++|.++|+++|+++|+||+++ . +. ....+..
T Consensus 138 ~~~l~~ai~--------~~tklV~vesp-~NptG~v~d----l~~I~~la~~~gi~livD~a~a-~---~~--~~~pl~~ 198 (427)
T PRK05994 138 PASFERAIT--------PRTKAIFIESI-ANPGGTVTD----IAAIAEVAHRAGLPLIVDNTLA-S---PY--LIRPIEH 198 (427)
T ss_pred HHHHHHhcC--------cCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCcc-c---cc--cCCcccc
Confidence 134555553 25678999987 777788776 8999999999999999999995 2 21 2234456
Q ss_pred CCceee--cccccCC-CCCcceEEEec
Q 003472 681 VPDIAC--YGKLLTG-GVIPLAATLAT 704 (817)
Q Consensus 681 ~PDivt--lgK~Lgg-Gy~PlsAvl~s 704 (817)
.+|+++ +.|.+|| | -++|++++.
T Consensus 199 gaDivv~S~tK~lgg~~-~~~gG~v~~ 224 (427)
T PRK05994 199 GADIVVHSLTKFLGGHG-NSMGGIIVD 224 (427)
T ss_pred CCcEEEEcCccccCCCC-CcEEEEEEe
Confidence 789885 7899997 4 577777764
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.1e-08 Score=113.46 Aligned_cols=163 Identities=13% Similarity=0.110 Sum_probs=106.5
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.+. +.+++++||++|+..++.... . + ...||.....|+|.
T Consensus 55 ~~~pt~~~Le~~lA~l~g~---~~~l~~ssG~~Ai~~al~al~-----~---------------~-Gd~Vl~~~~~Y~~t 110 (425)
T PRK06084 55 IMNPTNDVLEQRVAALEGG---VGALAVASGMAAITYAIQTIA-----E---------------A-GDNIVSVAKLYGGT 110 (425)
T ss_pred CCCchHHHHHHHHHHHhCC---CceeEehhHHHHHHHHHHHHh-----C---------------C-CCEEEEeCCCcchH
Confidence 3467778999999999873 578899999999999998762 1 1 13688888888873
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
...+... .+. .+.- +..++ .+|
T Consensus 111 -~~~~~~~-l~~------------~gi~-----------v~~~d----------------~~d----------------- 132 (425)
T PRK06084 111 -YNLLAHT-LPR------------IGIE-----------TRFAA----------------HDD----------------- 132 (425)
T ss_pred -HHHHHHh-ccc------------ceeE-----------EEEEC----------------CCC-----------------
Confidence 3222210 000 0000 00000 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.++ .++.+|++|.. ..-.|.+.+ +++|.++|+++|+++|+||++. .+-.. ....
T Consensus 133 -~e~le~ai~--------~~tklV~lesp-~NPtG~v~d----l~~I~~la~~~~i~vVvD~a~a-~~~~~-----~p~~ 192 (425)
T PRK06084 133 -IAALEALID--------ERTKAVFCESI-GNPAGNIID----IQALADAAHRHGVPLIVDNTVA-TPVLC-----RPFE 192 (425)
T ss_pred -HHHHHHHhc--------cCCcEEEEeCC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-ccccC-----Chhh
Confidence 145666664 24578999986 777788776 8999999999999999999994 32222 2223
Q ss_pred CCCcee--ecccccCCCCCcceEEEec
Q 003472 680 CVPDIA--CYGKLLTGGVIPLAATLAT 704 (817)
Q Consensus 680 v~PDiv--tlgK~LggGy~PlsAvl~s 704 (817)
.-+|++ .+.|.++|.--.+|++++.
T Consensus 193 ~gaDivv~S~tK~l~G~g~~~gG~v~~ 219 (425)
T PRK06084 193 HGADIVVHSLTKYIGGHGTSIGGIVVD 219 (425)
T ss_pred cCCCEEEECchhcccccccceeEEEEe
Confidence 457877 7799998722567766664
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.1e-07 Score=103.64 Aligned_cols=255 Identities=10% Similarity=0.004 Sum_probs=144.0
Q ss_pred CCCCCCHHHHHHHHHHHHhccccCCCCCC-------ChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHh
Q 003472 413 PDATLQIELARDMGYTAARFGHVMFPENV-------YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF 485 (817)
Q Consensus 413 LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~-------~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~ 485 (817)
.|-- ++.|.+|+.+.+....... .... .+...++.++|+++++.. .+.++|++++++|++.+++.. ...
T Consensus 7 ~~~~-~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~~~g~t~a~~~~l~~l-~~~ 82 (353)
T TIGR03235 7 TTPI-DPAVAEAMLPWLLEEFGNP-SSRTHEFGHNAKKAVERARKQVAEALGAD-TEEVIFTSGATESNNLAILGL-ARA 82 (353)
T ss_pred CCCC-CHHHHHHHHHHHHhcCCCC-CchhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHHHHHHHHHHH-HHh
Confidence 4555 8999999998875422111 1101 134567888888888743 357999999999999999766 221
Q ss_pred hccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCC
Q 003472 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP 565 (817)
Q Consensus 486 t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P 565 (817)
... +++ +.|......|.+.......... .|. .+..++.+
T Consensus 83 ~~~---------------~g~-~~vi~~~~~~~s~~~~~~~~~~--------------~G~-----------~v~~v~~~ 121 (353)
T TIGR03235 83 GEQ---------------KGK-KHIITSAIEHPAVLEPIRALER--------------NGF-----------TVTYLPVD 121 (353)
T ss_pred ccc---------------CCC-CeeeEcccccHHHHHHHHHHHh--------------cCC-----------EEEEEccC
Confidence 101 112 3344445555544332221100 000 00111111
Q ss_pred chhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHH
Q 003472 566 EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (817)
Q Consensus 566 ~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~ 645 (817)
... ..| .+.+++.+. .+..+|++.-+ +...|.+.+ +++
T Consensus 122 ~~~-----------~~d------------------~~~l~~~l~--------~~~~lv~~~~~-~n~tG~~~~----~~~ 159 (353)
T TIGR03235 122 ESG-----------RID------------------VDELADAIR--------PDTLLVSIMHV-NNETGSIQP----IRE 159 (353)
T ss_pred CCC-----------cCC------------------HHHHHHhCC--------CCCEEEEEEcc-cCCceeccC----HHH
Confidence 000 011 144555553 23567777776 788899887 899
Q ss_pred HHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCCCCCcceEEEechHHHhhhcCCCccceeecc
Q 003472 646 LVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHG 723 (817)
Q Consensus 646 Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~ 723 (817)
|.++|+++|+++|+|++|. +|..- +-.+ ....|+++++ |.+ |-.-+|+++++++..+.... .+...+
T Consensus 160 I~~l~~~~~~~~ivD~a~~-~g~~~--~~~~--~~~~D~~~~s~~K~~--gp~g~g~l~~~~~~~~~~~~----~~~~~~ 228 (353)
T TIGR03235 160 IAEVLEAHEAFFHVDAAQV-VGKIT--VDLS--ADRIDLISCSGHKIY--GPKGIGALVIRKRGKPKAPL----KPIMFG 228 (353)
T ss_pred HHHHHHHcCCEEEEEchhh-cCCcc--cccc--ccCCCEEEeehhhcC--CCCceEEEEEccCccccccc----CceeeC
Confidence 9999999999999999994 54431 1111 2357999887 964 31226888888875432110 111111
Q ss_pred -------cCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHH
Q 003472 724 -------HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (817)
Q Consensus 724 -------~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l 767 (817)
...+.|+...++..++|+.+++ + .++..++.+.+.+++++.+
T Consensus 229 ~~~~~~~~~gt~~~~~~~al~~al~~~~~-~-~~~~~~~~~~l~~~l~~~l 277 (353)
T TIGR03235 229 GGQERGLRPGTLPVHLIVGMGEAAEIARR-N-AQAWEVKLRAMRNQLRDAL 277 (353)
T ss_pred CCCcCccccCCCChHHHHHHHHHHHHHHh-h-HHHHHHHHHHHHHHHHHHh
Confidence 1234566777777888888753 2 2444555556666555443
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-07 Score=104.37 Aligned_cols=169 Identities=10% Similarity=0.032 Sum_probs=100.2
Q ss_pred cCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCCCCCcceEEEechHHH
Q 003472 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVF 708 (817)
Q Consensus 631 g~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~LggGy~PlsAvl~s~~i~ 708 (817)
...|.+.+ +++|.++|++||+++|+|.+|+ +|... .-... ..+|++ +..|.|+|+ .-+|.++++++.+
T Consensus 140 ~~tG~~~~----i~~I~~l~~~~g~~livD~~~~-~g~~~--~~~~~--~~~D~~~~s~~K~l~~p-~G~G~l~~~~~~~ 209 (363)
T TIGR02326 140 TTTGILNP----IEAVAKLAHRHGKVTIVDAMSS-FGGIP--IDIAE--LHIDYLISSANKCIQGV-PGFGFVIARQAEL 209 (363)
T ss_pred CCccccCc----HHHHHHHHHHcCCEEEEEcccc-ccCcc--cchhh--cCccEEEecCccccccC-CcceEEEECHHHH
Confidence 44678776 8999999999999999999984 65432 22222 347876 678998764 2368899999887
Q ss_pred hhhcCCCccce--e---------ec-ccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC
Q 003472 709 DSFVGDSKLKA--L---------LH-GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (817)
Q Consensus 709 d~~~~~~~~~~--~---------~h-~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~ 776 (817)
+.+........ . .. ...|+.++....+..++|+.+.+++..++..++...+.+++.+.+.+. ....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~--g~~~ 287 (363)
T TIGR02326 210 AACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL--GFEP 287 (363)
T ss_pred HHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc--CCee
Confidence 76532111000 0 00 123556777888888888887654434455566666666665544332 2222
Q ss_pred cce--EEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 777 VQR--VVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 777 V~~--VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.. .+ .+.+..+.+.+.. + .....+...+.++||.
T Consensus 288 ~~~~~~~-~~~~~~~~~~~~~---~-~~~~~v~~~L~~~gi~ 324 (363)
T TIGR02326 288 LLDDEIQ-SPIITSFYSPEDP---D-YRFADFYQRLKEQGFV 324 (363)
T ss_pred ccCcccC-CceEEEEECCCCC---C-CCHHHHHHHHHHCCEE
Confidence 211 22 3455566654321 0 1234566777778863
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.6e-08 Score=110.00 Aligned_cols=235 Identities=13% Similarity=0.106 Sum_probs=139.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++++++.+. +.++.++||+.|+..++.... . + ...||....+|++
T Consensus 50 ~~np~~~~lE~~lA~l~g~---~~~l~~~sG~~Ai~~~l~~ll-----~---------------~-GD~Vlv~~~~y~~- 104 (385)
T PRK08574 50 EENPTLRPLEEALAKLEGG---VDALAFNSGMAAISTLFFSLL-----K---------------A-GDRVVLPMEAYGT- 104 (385)
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHh-----C---------------C-CCEEEEcCCCchh-
Confidence 3467788999999999873 578889999999999987552 1 1 1256666666654
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
+...+... ..+ +. . +.+.+. +
T Consensus 105 ~~~~~~~~--~~~------------g~--------------~----------------v~~~~~--------d------- 125 (385)
T PRK08574 105 TLRLLKSL--EKF------------GV--------------K----------------VVLAYP--------S------- 125 (385)
T ss_pred HHHHHHHh--hcc------------Cc--------------E----------------EEEECC--------C-------
Confidence 32222110 000 00 0 000000 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.+. +.++.+|++|.. ....|.+.+ +++|.++|+++|+++|+||+++ .|-..... .+|
T Consensus 126 -~~~l~~~i~-------~~~tklV~ie~p-~NPtG~v~d----l~~I~~la~~~gi~livD~t~a-~~~~~~~l---~~G 188 (385)
T PRK08574 126 -TEDIIEAIK-------EGRTKLVFIETM-TNPTLKVID----VPEVAKAAKELGAILVVDNTFA-TPLLYRPL---RHG 188 (385)
T ss_pred -HHHHHHhcC-------ccCceEEEEECC-CCCCCEecC----HHHHHHHHHHcCCEEEEECCCC-ccccCChh---hhC
Confidence 134555554 125678889986 666777776 8899999999999999999993 22222211 123
Q ss_pred CCCcee--ecccccCC-CCCcceEEE-echHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHH
Q 003472 680 CVPDIA--CYGKLLTG-GVIPLAATL-ATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (817)
Q Consensus 680 v~PDiv--tlgK~Lgg-Gy~PlsAvl-~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~ 755 (817)
.|++ .+.|.++| |-.-.|+++ .++++.+.+... ....+...+|..|+.++..|+.+.. ..++..++
T Consensus 189 --aDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~------~~~~g~~~~p~~a~l~l~~l~tL~~--R~~~~~~n 258 (385)
T PRK08574 189 --ADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEW------RRRLGTIMQPFEAYLVLRGLKTLEV--RFERQCRN 258 (385)
T ss_pred --CcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHH------HHhcCCCCCHHHHHHHHcccCcHHH--HHHHHHHH
Confidence 4876 67999986 412234344 467776655321 1112345568888888888776643 12333334
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcceE--------------------EeeeeEEEEEEec
Q 003472 756 RRILRELWDLELIQQISSHRTVQRV--------------------VALGTLCAIELQA 793 (817)
Q Consensus 756 ~~~lg~~l~~~l~~~l~~~p~V~~V--------------------rG~Glm~gIel~~ 793 (817)
+.++.+ .++++|.|..| +|.|.|+.|+|..
T Consensus 259 a~~la~--------~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~ 308 (385)
T PRK08574 259 AMAIAE--------FLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKG 308 (385)
T ss_pred HHHHHH--------HHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCC
Confidence 444333 34455544432 3689999999963
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.4e-08 Score=96.47 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=60.6
Q ss_pred CCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCCC
Q 003472 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGG 694 (817)
Q Consensus 617 ~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~LggG 694 (817)
..+++++++++. ....|...+ .++|.++|+++|+++|+||++.++.....+ .......+|+++.| |.+++
T Consensus 90 ~~~~~~v~~~~~-~~~~g~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~~~~~--~~~~~~~~d~~~~s~~K~~~~- 161 (170)
T cd01494 90 KPNVALIVITPN-TTSGGVLVP----LKEIRKIAKEYGILLLVDAASAGGASPAPG--VLIPEGGADVVTFSLHKNLGG- 161 (170)
T ss_pred cCceEEEEEecC-cCCCCeEcC----HHHHHHHHHHcCCEEEEecccccccccccc--cccccccCCEEEEEcccccCC-
Confidence 467899999997 788887776 499999999999999999999877554433 22223468999888 99987
Q ss_pred CCcceEEEec
Q 003472 695 VIPLAATLAT 704 (817)
Q Consensus 695 y~PlsAvl~s 704 (817)
...|.++++
T Consensus 162 -~~~G~l~~~ 170 (170)
T cd01494 162 -EGGGVVIVK 170 (170)
T ss_pred -CceEEEEeC
Confidence 456666553
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.3e-08 Score=110.04 Aligned_cols=235 Identities=14% Similarity=0.098 Sum_probs=143.5
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.|. +.++.++||.+|+..++.... .. ...||+....|++.
T Consensus 61 ~~~p~~~~le~~lA~l~g~---~~~i~~ssG~~Ai~~~l~all-----~~----------------GD~Vi~~~~~y~~~ 116 (398)
T PRK08249 61 NTNPTVQAFEEKVRILEGA---EAATAFSTGMAAISNTLYTFL-----KP----------------GDRVVSIKDTYGGT 116 (398)
T ss_pred CCChHHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhc-----CC----------------CCEEEEcCCchHHH
Confidence 4578889999999999883 578999999999998887551 11 13678877777652
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
. ..+.-. ... .|.- +..++ ..|
T Consensus 117 ~-~~~~~~-~~~------------~Gi~-----------v~~vd----------------~~d----------------- 138 (398)
T PRK08249 117 N-KIFTEF-LPR------------MGVD-----------VTLCE----------------TGD----------------- 138 (398)
T ss_pred H-HHHHHH-Hhh------------CCeE-----------EEEcC----------------CCC-----------------
Confidence 1 111000 000 0000 00000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.++ .++.+|++|-. ....|.+.+ +++|.++|+++|+++|+||++..+ -.+. ...
T Consensus 139 -~e~l~~~i~--------~~tklV~ie~p-~NPtg~v~d----l~~I~~la~~~gi~livD~t~a~~-~~~~-----~l~ 198 (398)
T PRK08249 139 -HEQIEAEIA--------KGCDLLYLETP-TNPTLKIVD----IERLAAAAKKVGALVVVDNTFATP-INQN-----PLA 198 (398)
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CCCCCccCC----HHHHHHHHHHcCCEEEEECCcCcc-ccCC-----chh
Confidence 134555554 24568888875 566777776 899999999999999999998532 1111 122
Q ss_pred CCCcee--ecccccCC-CCCcc-eEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHH
Q 003472 680 CVPDIA--CYGKLLTG-GVIPL-AATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (817)
Q Consensus 680 v~PDiv--tlgK~Lgg-Gy~Pl-sAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~ 755 (817)
...|++ +++|.+|| | -.+ |++++++++++.+..- ........+|..++.++..|+.+.. ..++..++
T Consensus 199 ~~~Divv~S~sK~l~g~~-~~~gG~vv~~~~l~~~l~~~------~~~~g~~~s~~~a~l~l~~l~tL~~--R~~~~~~n 269 (398)
T PRK08249 199 LGADLVIHSATKFLSGHA-DALGGVVCGSKELMEQVYHY------REINGATMDPMSAYLILRGMKTLKL--RVRQQQES 269 (398)
T ss_pred hCCCEEeccCceecCCCC-CceEEEEECCHHHHHHHHHH------HHhcCCCCCHHHHHHHHhCcchHHH--HHHHHHHH
Confidence 346776 67899986 3 233 5566778887766321 1223445688888888888877742 22333444
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcceE------------------EeeeeEEEEEEec
Q 003472 756 RRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (817)
Q Consensus 756 ~~~lg~~l~~~l~~~l~~~p~V~~V------------------rG~Glm~gIel~~ 793 (817)
+..+.+ .+++||.|..| .|.|.|+.|+|..
T Consensus 270 a~~la~--------~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~ 317 (398)
T PRK08249 270 AMALAK--------YLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKG 317 (398)
T ss_pred HHHHHH--------HHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcC
Confidence 444433 34455544433 3678899999964
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-07 Score=105.33 Aligned_cols=188 Identities=18% Similarity=0.131 Sum_probs=110.9
Q ss_pred HHHHHHHhcCCCCCCCC-cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-c-h-hhh
Q 003472 602 SYISQNLLQNPGLKVSG-CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-T-T-ADL 677 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~-~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~-a-~e~ 677 (817)
+.|++.+++. ...+ ++.+|++... +...|... +.+.+++|.++|++||+++|+||++..+ ..+.. + . ...
T Consensus 133 ~~l~~~l~~~---~~~~~~~~~v~~~~p-~nPtG~~~-~~~~l~~l~~~~~~~~~~ii~De~y~~~-~~~~~~~~~~~~~ 206 (363)
T PF00155_consen 133 EALEEALDEL---PSKGPRPKAVLICNP-NNPTGSVL-SLEELRELAELAREYNIIIIVDEAYSDL-IFGDPDFGPIRSL 206 (363)
T ss_dssp HHHHHHHHTS---HTTTETEEEEEEESS-BTTTTBB---HHHHHHHHHHHHHTTSEEEEEETTTTG-BSSSSHTHHHHGH
T ss_pred cccccccccc---cccccccceeeeccc-cccccccc-ccccccchhhhhcccccceeeeeceecc-ccCCCccCccccc
Confidence 5677777742 1122 3566777665 66667655 7888999999999999999999999766 44432 1 1 222
Q ss_pred cCCCCcee---ecccccC-CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHH
Q 003472 678 LGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (817)
Q Consensus 678 ~gv~PDiv---tlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~ 753 (817)
..-.++++ +++|.+| -| +.+|.+++++++.+.+.. +..++..+....+++.+.+.--.. ..+.+.
T Consensus 207 ~~~~~~vi~~~S~SK~~g~~G-lRvG~i~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~ 275 (363)
T PF00155_consen 207 LDEDDNVIVVGSLSKSFGLPG-LRVGYIVAPPELIERLRR--------FQRSGLSSSPMQAAAAAALSDPEL--VEKWLE 275 (363)
T ss_dssp HTTTSTEEEEEESTTTTTSGG-GTEEEEEEEHHHHHHHHH--------HHHHTTSSHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred ccccccceeeeeccccccccc-cccccccchhhhhhhhhh--------ccccccccchhhHHHHHhhhcccc--cccccc
Confidence 33344533 7899998 58 789999999999998853 233444466777666666554431 001222
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcceEEe--eeeEEEEEEecCCCCCCcchHHHHHHHHHHc-CCC
Q 003472 754 PERRILRELWDLELIQQISSHRTVQRVVA--LGTLCAIELQAAGCNAGYCLIELFLYNFLTT-GMH 816 (817)
Q Consensus 754 ~~~~~lg~~l~~~l~~~l~~~p~V~~VrG--~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~-Gv~ 816 (817)
+..+.+.+. .+.+.+.+++... .+.+ -|.++-+.+... ....+...++++ ||.
T Consensus 276 ~~~~~l~~~-~~~l~~~L~~~~~--~~~~~~~~~~~~~~~~~~-------~~~~l~~~L~~~~gi~ 331 (363)
T PF00155_consen 276 ELRERLREN-RDLLREALEEIGI--TVLPPEAGFFLWVRLDPN-------DAEELAQELLEEYGIL 331 (363)
T ss_dssp HHHHHHHHH-HHHHHHHHHHTTS--EEEHHSBSSEEEEEESHH-------HHHHHHHHHHHHHTEE
T ss_pred cchhhHHHH-HHHHHHHHHHhhh--heeeccCccEEEEEcccc-------hHHHHHHHHHHhCCEE
Confidence 222222221 1223444444422 2322 466666666543 345677778887 763
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.3e-07 Score=100.90 Aligned_cols=293 Identities=14% Similarity=0.051 Sum_probs=154.7
Q ss_pred CHHHHHHHHHHHHhc-cccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhcccccccccc
Q 003472 418 QIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~ 496 (817)
+|.+.+|+....... +.........+...++.+.|+++++.+ -+.++++++|++|+..++..+ +......
T Consensus 33 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~~~~~g~~~~~~~~~~~~-~~~~~~~------- 103 (373)
T TIGR03812 33 HPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLP-DAYGYIVSGGTEANIQAVRAA-KNLAREE------- 103 (373)
T ss_pred hHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCC-CCCeEEeccHHHHHHHHHHHH-HHHHhcc-------
Confidence 788888887765543 211111122355578889999988743 235788999999999999876 3221110
Q ss_pred CCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccc
Q 003472 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (817)
Q Consensus 497 ~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~ 576 (817)
.....|+..+.+|.+ ...+....|.. +..++.+..+
T Consensus 104 -------~~g~~vl~~~~~h~~-~~~~~~~~G~~----------------------------~~~v~~~~~~-------- 139 (373)
T TIGR03812 104 -------KRTPNIIVPESAHFS-FEKAAEMLGLE----------------------------LRYAPLDEDY-------- 139 (373)
T ss_pred -------CCCcEEEECCcchHH-HHHHHHHcCCe----------------------------EEEEeeCCCC--------
Confidence 011356665554443 22222211110 0111111000
Q ss_pred cccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCc
Q 003472 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (817)
Q Consensus 577 d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~Gil 656 (817)
..| .+.+++.+++ ..++.+++.|. ...|.+.+ +++|.++|+++|++
T Consensus 140 ---~~d------------------~~~l~~~l~~-------~~~~vv~~~~~--~~tG~~~~----~~~i~~l~~~~~~~ 185 (373)
T TIGR03812 140 ---TVD------------------VKDVEDLIDD-------NTIGIVGIAGT--TELGQIDD----IEELSKIALENGIY 185 (373)
T ss_pred ---CcC------------------HHHHHHHHhh-------CcEEEEEECCC--CCCCccCC----HHHHHHHHHHcCCe
Confidence 011 2456666652 23456667774 45677766 89999999999999
Q ss_pred EEEeeeeecccccccc-chhh--hcCC---CCceeec--ccccCCCCCcceEEE-echHHHhhhcCCCccceeeccc---
Q 003472 657 VIFDEVFTGFWRLGVE-TTAD--LLGC---VPDIACY--GKLLTGGVIPLAATL-ATNAVFDSFVGDSKLKALLHGH--- 724 (817)
Q Consensus 657 LI~DEV~TGfGRtG~~-~a~e--~~gv---~PDivtl--gK~LggGy~PlsAvl-~s~~i~d~~~~~~~~~~~~h~~--- 724 (817)
+|+||+|.++ -.+.. +... ..++ ..|.+++ -|-+.++ .|.|+++ .++++.+.+.... ++..+.
T Consensus 186 livD~a~~~~-~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~-~~~G~~~~~~~~~~~~l~~~~---~~~~~~~~~ 260 (373)
T TIGR03812 186 LHVDAAFGGF-VIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSP-IPAGGILFRSKSYLKYLSVDA---PYLTVKKQA 260 (373)
T ss_pred EEEEcCchhH-HHHHHhcCCCCCCccccCCCCCEEEECccccCCCc-CCceEEEEeCHHHHhhhcccC---cccCCCCCc
Confidence 9999999644 21100 0001 1111 2355543 3632334 5777666 5777777663211 111111
Q ss_pred --CCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcch
Q 003472 725 --SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCL 802 (817)
Q Consensus 725 --T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~ 802 (817)
+.+-++.+++++.++|+.+.++++ +++.++...+.++|.+.+.+. .+..+.. ...-++.+.+.+
T Consensus 261 ~~~gt~~~~~~~~~~~~l~~l~~~g~-~~~~~~~~~~~~~l~~~L~~~--g~~~~~~--~~~~~v~~~~~~--------- 326 (373)
T TIGR03812 261 TITGTRSGASAAATYAVIKYLGREGY-RKIVAECMENTRYLVEELKKI--GFEPVIE--PVLNIVAFEVDD--------- 326 (373)
T ss_pred ceEeechhHHHHHHHHHHHHhCHHHH-HHHHHHHHHHHHHHHHHHHhC--CCeEEcC--CCceEEEEEeCC---------
Confidence 123456788889999998865433 445555666666555544332 1211211 122233333321
Q ss_pred HHHHHHHHHHcCCC
Q 003472 803 IELFLYNFLTTGMH 816 (817)
Q Consensus 803 ~~~~~~~~l~~Gv~ 816 (817)
...+...+.++||+
T Consensus 327 ~~~v~~~L~~~gi~ 340 (373)
T TIGR03812 327 PEEVRKKLRDRGWY 340 (373)
T ss_pred HHHHHHHHHHCCce
Confidence 13577777888874
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.3e-07 Score=101.82 Aligned_cols=177 Identities=14% Similarity=0.115 Sum_probs=98.5
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-chhhhc-CCC-Cce--eecccccC-
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL-GCV-PDI--ACYGKLLT- 692 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a~e~~-gv~-PDi--vtlgK~Lg- 692 (817)
++.+|++... +.-.|... +++.+++|.++|++||+++|+||++.++.-.+.. .....+ +.. .++ .+++|.+|
T Consensus 159 ~~~~v~l~~p-~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 236 (387)
T PRK07777 159 RTRALIVNSP-HNPTGTVL-TAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNV 236 (387)
T ss_pred ccEEEEEcCC-CCCCCccC-CHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccC
Confidence 3456666654 66677766 7889999999999999999999999766322321 111111 211 233 37999998
Q ss_pred CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
.| +-+|.+++++++.+.+... .+..++..++....++.++++. .+...+.+.+..+...+.+. +.++
T Consensus 237 ~G-lRiG~~~~~~~l~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~----~~L~ 303 (387)
T PRK07777 237 TG-WKIGWACGPAPLIAAVRAA------KQYLTYVGGAPFQPAVAHALDH--EDAWVAALRDSLQAKRDRLA----AGLA 303 (387)
T ss_pred cC-ceeEEEecCHHHHHHHHHH------HhhcccCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHH----HHHH
Confidence 68 7999999999988877532 1223454444444444444432 12222333333333333333 3333
Q ss_pred cCCC-cceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCC
Q 003472 773 SHRT-VQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGM 815 (817)
Q Consensus 773 ~~p~-V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv 815 (817)
+... +....| |.++-+++...+ ......|...++ ++||
T Consensus 304 ~~~~~~~~~~g-~~~~~~~~~~~~----~~~~~~~~~~l~~~~gv 343 (387)
T PRK07777 304 EAGFEVHDSAG-TYFLCADPRPLG----YDDGTEFCRALPERVGV 343 (387)
T ss_pred hCCCCccCCCc-ceEEEecccccC----CCCHHHHHHHHHHhCCE
Confidence 3332 111222 455666764321 113356666775 4576
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-07 Score=108.47 Aligned_cols=150 Identities=15% Similarity=0.111 Sum_probs=95.9
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC-CC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg-Gy 695 (817)
++.+|++|.. ..-.|.+.+ +++|.++|+++|+++|+|+++.. +..+.. .+...|++ .++|.++| |-
T Consensus 150 ~tklV~le~p-~NPtG~~~d----i~~I~~la~~~gi~lIvD~a~a~-~~~~~~-----l~~g~Di~v~S~tK~l~g~gd 218 (403)
T PRK07503 150 KTRMVYFETP-ANPNMRLVD----IAAVAEIAHGAGAKVVVDNTYCT-PYLQRP-----LELGADLVVHSATKYLGGHGD 218 (403)
T ss_pred cCcEEEEeCC-CCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcc-cccCCc-----hhhCCCEEEccccccccCCCc
Confidence 4568888865 566677766 89999999999999999999952 222222 23356876 56899986 32
Q ss_pred CcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 696 ~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
+=.|+++.++++++.+.... ......+..+|+.++.++..|+.+.. ..++..+++..+.+ .+++||
T Consensus 219 ~~gG~v~~~~~l~~~l~~~~----~~~~~g~~~s~~~a~l~l~~L~tl~~--r~~~~~~na~~~a~--------~L~~~p 284 (403)
T PRK07503 219 ITAGLVVGGKALADRIRLEG----LKDMTGAVMSPFDAFLLMRGLKTLAL--RMDRHCASAQAVAE--------WLARHP 284 (403)
T ss_pred eeEEEEEcCHHHHHHHHhhh----HHhCcCCCCCHHHHHHHHcCcchHHH--HHHHHHHHHHHHHH--------HHHhCC
Confidence 33566777888877664210 01112356789999988888777632 12333344444443 334444
Q ss_pred CcceE------------------EeeeeEEEEEEec
Q 003472 776 TVQRV------------------VALGTLCAIELQA 793 (817)
Q Consensus 776 ~V~~V------------------rG~Glm~gIel~~ 793 (817)
.|..| +|.|.|+.+++..
T Consensus 285 ~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~~ 320 (403)
T PRK07503 285 AVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKG 320 (403)
T ss_pred CccEEECCCCCCCccHHHHHHhCCCCCceEEEEECC
Confidence 43333 4678899999964
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.9e-08 Score=109.35 Aligned_cols=161 Identities=12% Similarity=0.073 Sum_probs=100.7
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhc--CCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC-
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG- 693 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~--GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg- 693 (817)
+..+|++|.. ....|.+.+ +++|.++|+++ |+++|+||++. .+-.+.. .+...|++ .++|.++|
T Consensus 149 ~tklI~iesP-~NPtG~v~d----l~~I~~la~~~~~~i~livDea~~-~~~~~~~-----l~~g~Divv~S~sK~l~g~ 217 (400)
T PRK06234 149 NTKVVYLETP-ANPTLKVTD----IKAISNIAHENNKECLVFVDNTFC-TPYIQRP-----LQLGADVVVHSATKYLNGH 217 (400)
T ss_pred CCeEEEEECC-CCCCCCcCC----HHHHHHHHHhcCCCCEEEEECCCC-chhcCCc-----hhhCCcEEEeeccccccCC
Confidence 3568888876 666777766 99999999997 99999999984 2222221 22346877 56899986
Q ss_pred CCCcc-eEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 694 GVIPL-AATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 694 Gy~Pl-sAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
| -.+ |++++++++++.+.... .....+...+|..++.++..|+.+.. ..++..+++.++.+ .++
T Consensus 218 g-~~~gG~v~~~~~~~~~l~~~~----~~~~~g~~l~p~~a~l~~~~l~tl~~--r~~~~~~na~~~a~--------~L~ 282 (400)
T PRK06234 218 G-DVIAGFVVGKEEFINQVKLFG----IKDMTGSVIGPFEAFLIIRGMKTLQI--RMEKHCKNAMKVAK--------FLE 282 (400)
T ss_pred C-CceeEEEEecHHHHHHHHHHH----HHHhcCCCCCHHHHHHHHhccCcHHH--HHHHHHHHHHHHHH--------HHH
Confidence 4 344 77888888877664211 00122456789999888887765532 23444455544444 334
Q ss_pred cCCCcceE------------------EeeeeEEEEEEecCCCCCCcchHHHHHHHH
Q 003472 773 SHRTVQRV------------------VALGTLCAIELQAAGCNAGYCLIELFLYNF 810 (817)
Q Consensus 773 ~~p~V~~V------------------rG~Glm~gIel~~~~~~~~~~~~~~~~~~~ 810 (817)
+||.|..| .|.|.|+.|++... .+....|+..+
T Consensus 283 ~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~-----~~~~~~f~~~l 333 (400)
T PRK06234 283 SHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGG-----VEEGKVVMNNV 333 (400)
T ss_pred cCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCc-----HHHHHHHHHhC
Confidence 44444322 36788999999643 13344555443
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-06 Score=97.64 Aligned_cols=293 Identities=15% Similarity=0.056 Sum_probs=163.0
Q ss_pred CHHHHHHHHHHHHhcc-ccCCCCCCChHHHHHHHHHHhhcCCC-CcceEEEeCChHHHHHHHHHHHHHHhhccccccccc
Q 003472 418 QIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~ 495 (817)
.+.+.+++.+.+.... .+....+..+....+++.+.+..+.+ ..+.+++++++++|...++.... ..
T Consensus 47 ~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~-----~~------ 115 (387)
T PRK08960 47 AEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLV-----DP------ 115 (387)
T ss_pred CHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhc-----CC------
Confidence 6889999888776421 11112233445566676665432211 13579999999999998886651 11
Q ss_pred cCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhccccc
Q 003472 496 LGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (817)
Q Consensus 496 ~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~ 575 (817)
...|+..+-+|.+..... ...|.. +..++.....
T Consensus 116 ----------gd~vlv~~p~y~~~~~~~-~~~g~~----------------------------~~~v~~~~~~------- 149 (387)
T PRK08960 116 ----------GKHWLLADPGYPCNRHFL-RLVEGA----------------------------AQLVPVGPDS------- 149 (387)
T ss_pred ----------CCEEEEcCCCCcchHHHH-HhcCCe----------------------------EEEEecCccc-------
Confidence 136777777776643221 111110 0111110000
Q ss_pred ccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCC
Q 003472 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (817)
Q Consensus 576 ~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~Gi 655 (817)
+ |. + + .+.+++.++ ......+|.-| +.-.|... +.+-+++|.++|++||+
T Consensus 150 -~--~~-~--------d--------~~~l~~~~~-------~~~~~i~i~~p--~NPtG~~~-~~~~~~~l~~~~~~~~~ 199 (387)
T PRK08960 150 -R--YQ-L--------T--------PALVERHWN-------ADTVGALVASP--ANPTGTLL-SRDELAALSQALRARGG 199 (387)
T ss_pred -C--CC-C--------C--------HHHHHHHhC-------ccceEEEEECC--CCCCCcCc-CHHHHHHHHHHHHHcCC
Confidence 0 00 0 0 144555554 23455677777 45566666 78889999999999999
Q ss_pred cEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHH
Q 003472 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHAL 731 (817)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPl 731 (817)
++|+||+...+--.+.. .....+.++++ +++|.+| .| +-+|.+++++++++.+..- ....+.+.+.+
T Consensus 200 ~li~De~Y~~~~~~~~~--~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~------~~~~~~~~s~~ 270 (387)
T PRK08960 200 HLVVDEIYHGLTYGVDA--ASVLEVDDDAFVLNSFSKYFGMTG-WRLGWLVAPPAAVPELEKL------AQNLYISASTP 270 (387)
T ss_pred EEEEEccccccccCCCC--CChhhccCCEEEEeecccccCCcc-cEEEEEEcCHHHHHHHHHH------HhhhccCCCHH
Confidence 99999999776221221 12234456766 5899997 68 7999999999998877421 12234455777
Q ss_pred HHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceE-EeeeeEEEEEEecCCCCCCcchHHHHHHHH
Q 003472 732 GCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-VALGTLCAIELQAAGCNAGYCLIELFLYNF 810 (817)
Q Consensus 732 a~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~V-rG~Glm~gIel~~~~~~~~~~~~~~~~~~~ 810 (817)
+-.++.+.|+ + +....+.+..+.+.+. ++.+.+.++++++...+ ..-|.++-+++.+.. .....+...+
T Consensus 271 ~q~a~~~~l~---~-~~~~~l~~~~~~~~~~-~~~l~~~L~~~~~~~~~~p~g~~f~~~~~~~~~-----~~~~~~~~~l 340 (387)
T PRK08960 271 AQHAALACFE---P-ETLAILEARRAEFARR-RDFLLPALRELGFGIAVEPQGAFYLYADISAFG-----GDAFAFCRHF 340 (387)
T ss_pred HHHHHHHHhh---c-CcHHHHHHHHHHHHHH-HHHHHHHHHhcCCcCCcCCCeeEEEEEeccccC-----CCHHHHHHHH
Confidence 7676666653 1 1112222222222221 22344555556542212 334777788775421 1224555565
Q ss_pred H-HcCCC
Q 003472 811 L-TTGMH 816 (817)
Q Consensus 811 l-~~Gv~ 816 (817)
+ ++||.
T Consensus 341 l~~~gi~ 347 (387)
T PRK08960 341 LETEHVA 347 (387)
T ss_pred HHhCCEE
Confidence 5 46763
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.2e-07 Score=100.62 Aligned_cols=306 Identities=9% Similarity=0.044 Sum_probs=165.1
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCC-------ChHHHHHHHHHHhhcCCCCcceEEEeCChHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-------YEPALECAELLLQGVGKGWASRAYFSDNGST 472 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~-------~~~~~eLae~L~~~~~~~~~~~v~f~~SGse 472 (817)
-|||..+ .|-- .+.+.+|+.+.+........ ... .+...++.+.++++++....+.+.|++++++
T Consensus 18 iyld~a~------~~~~-p~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~ 89 (398)
T TIGR03392 18 VYLDSAA------TALK-PQAVIDATQQFYRLSSGTVH-RSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTE 89 (398)
T ss_pred EEeeCcc------ccCC-CHHHHHHHHHHHHhcCCCCC-CcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHH
Confidence 6787544 4656 88999999887754321110 011 1234567778888877421357999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCc
Q 003472 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (817)
Q Consensus 473 A~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (817)
|+..++........ . ...+||..+..|++.......+... .|.
T Consensus 90 ~l~~~~~~~~~~~~-~----------------~gd~Vl~~~~~~~s~~~~~~~~~~~--------------~g~------ 132 (398)
T TIGR03392 90 SINLVAQSYARPRL-Q----------------PGDEIIVSEAEHHANLIPWLMVAQQ--------------TGA------ 132 (398)
T ss_pred HHHHHHHHhhhccC-C----------------CCCEEEECCcchhHHHHHHHHHHHH--------------cCc------
Confidence 99988876511000 1 1236777777777632111111000 000
Q ss_pred ccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003472 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (817)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~ 632 (817)
.+..++.+..+ ..| .+.+++.+.+ +..+|++.-+ +..
T Consensus 133 -----~v~~v~~~~~~-----------~~~------------------~~~l~~~i~~--------~t~lv~i~~~-~n~ 169 (398)
T TIGR03392 133 -----KVVKLPIGADL-----------LPD------------------IRQLPELLTP--------RTRILALGQM-SNV 169 (398)
T ss_pred -----EEEEEecCCCC-----------CcC------------------HHHHHHHhcc--------CceEEEEECc-ccc
Confidence 00111111000 001 2456666542 2345555544 666
Q ss_pred CCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCCCCCcceEEEechHHHhh
Q 003472 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDS 710 (817)
Q Consensus 633 gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~LggGy~PlsAvl~s~~i~d~ 710 (817)
.|.+.+ +++|.++|+++|+++|+|++|. +|.. . .+.....+|+++++ |.+|- .-+|.+++++++.+.
T Consensus 170 tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~~-~---~~~~~~~~d~~~~s~~K~~gp--~G~G~l~~~~~~~~~ 238 (398)
T TIGR03392 170 TGGCPD----LARAITLAHQYGAVVVVDGAQG-VVHG-P---PDVQALDIDFYAFSGHKLYGP--TGIGVLYGKTELLEA 238 (398)
T ss_pred ccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCC-C---CChhhcCCCEEEEecccccCC--CceEEEEEcHHHHhh
Confidence 788876 8899999999999999999994 4332 1 11122357999998 96642 126888899988776
Q ss_pred hcCCCcccee-----ecc-------cCC---CCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 711 FVGDSKLKAL-----LHG-------HSY---SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 711 ~~~~~~~~~~-----~h~-------~T~---~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
+......... ... .-| +-|..+.++..++++.+++.+. +++.++...+.+++.+ .+++.|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~-~~i~~~~~~l~~~l~~----~l~~l~ 313 (398)
T TIGR03392 239 MPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDI-AAAEAWSVSLADLAEE----RLAQLP 313 (398)
T ss_pred CCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHH----HHhcCC
Confidence 5321000000 000 001 2355677888888988866433 3555555556554443 444444
Q ss_pred CcceEE-eeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 776 TVQRVV-ALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 776 ~V~~Vr-G~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+.-.. -...++.+.+... ....+...+.++||.
T Consensus 314 g~~~~~~~~~~i~~~~~~~~-------~~~~l~~~L~~~gI~ 348 (398)
T TIGR03392 314 GFRSFRCPGSSLLAFDFAGV-------HHSDLAALLAESGIA 348 (398)
T ss_pred CeEEeCCCCCcEEEEEeCCc-------CHHHHHHHHHhCCEE
Confidence 321110 1234556555321 234466666677763
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.9e-07 Score=99.95 Aligned_cols=185 Identities=13% Similarity=0.093 Sum_probs=103.0
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc---hhhhc
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET---TADLL 678 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~---a~e~~ 678 (817)
+.+++.+++ ...+.+++-| ..-.|.+. +.+.+++|.++|++||+++|.||+...| +.+... .....
T Consensus 154 ~~l~~~~~~-------~~~~v~~~~P--~NPtG~~~-~~~~~~~i~~~~~~~~~~iI~Dd~y~~~-~~~~~~~~~~~~~~ 222 (386)
T PRK07550 154 AAAEALITP-------RTRAIALVTP--NNPTGVVY-PPELLHELYDLARRHGIALILDETYRDF-DSGGGAPHDLFADP 222 (386)
T ss_pred HHHHHHhcc-------cCcEEEEeCC--CCCCCccc-CHHHHHHHHHHHHHcCeEEEEeccchhh-ccCCCCCcchhhCC
Confidence 456666642 2234455555 34456655 7889999999999999999999999766 322111 11111
Q ss_pred CCCCc---eeecccccC-CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHH
Q 003472 679 GCVPD---IACYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (817)
Q Consensus 679 gv~PD---ivtlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~ 754 (817)
+-..+ +.+++|.+| .| +.+|++++++++++.+... ....+.+.+.++..++.+.|+.+++ ..+++.+
T Consensus 223 ~~~~~~i~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~------~~~~~~~~s~~~q~~~~~~l~~~~~--~~~~~~~ 293 (386)
T PRK07550 223 DWDDTLVHLYSFSKSYALTG-HRVGAVVASPARIAEIEKF------MDTVAICAPRIGQIAVAWGLPNLAD--WRAGNRA 293 (386)
T ss_pred CccccEEEEecchhhccCcc-cceEeeecCHHHHHHHHHH------HhhcccCCCcHHHHHHHHHhccHHH--HHHHHHH
Confidence 11122 348999998 78 7999999999988877431 2234455567776666666643211 1122222
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcceEEee-eeEEEEEEecCCCCCCcchHHHHHHHHH-HcCCC
Q 003472 755 ERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 755 ~~~~lg~~l~~~l~~~l~~~p~V~~VrG~-Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv~ 816 (817)
..+...+ .+.+.+++++.+ .+... |.++-+++...+ .....+...++ ++||.
T Consensus 294 ~~~~~~~----~l~~~L~~~~~~-~~~~~g~~~~~~~~~~~~-----~~~~~l~~~l~~~~gv~ 347 (386)
T PRK07550 294 EIARRRD----AFRAVFARLPGW-ELLASGAYFAYVRHPFPD-----RPSREVARRLAKEAGIL 347 (386)
T ss_pred HHHHHHH----HHHHHHHhCCCc-eeCCCceEEEEecCCCCC-----CCHHHHHHHHHHhcCEE
Confidence 2222222 344455554332 23333 445555654311 22344555554 46763
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-06 Score=98.53 Aligned_cols=299 Identities=9% Similarity=-0.023 Sum_probs=162.4
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCC-----CChHHHHHHHHHHhhcCCCCcceEEEeCChHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~-----~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~ 474 (817)
.|||..+ .|-- .+.+.+|+.+.+..........+ ..+...++.+.++++++.. .+.+.|++++++++
T Consensus 19 ~yl~~~~------~~~~-p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~-~~~v~~~~~~t~~l 90 (397)
T TIGR01976 19 VFFDNPA------GTQI-PQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNAD-PPEVVFGANATSLT 90 (397)
T ss_pred EEecCCc------cCCC-CHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCC-CCeEEEeCCHHHHH
Confidence 6777543 4555 89999999998876432110011 1234568888999988743 23689999999988
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccc-c---ccCCCCCCCcCCCCCccCCccccCC
Q 003472 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM-E---AQAPSPYTGFLQQPWYSGRGLFLDP 550 (817)
Q Consensus 475 E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~gal-s---lt~~~~~~~~~~~~~~~~~~~~~~~ 550 (817)
..++... .... . + ..+|+..+..|.+ +.... . ..|..
T Consensus 91 ~~~~~~~-~~~~-~---------------~-gd~vl~~~~~~~s-~~~~~~~~~~~~g~~-------------------- 131 (397)
T TIGR01976 91 FLLSRAI-SRRW-G---------------P-GDEVIVTRLDHEA-NISPWLQAAERAGAK-------------------- 131 (397)
T ss_pred HHHHHHH-HhcC-C---------------C-CCEEEEcCCchHh-HHHHHHHHHHhcCCE--------------------
Confidence 7666554 1111 1 1 1356666655544 22111 1 11110
Q ss_pred CcccccCcceeecCCc-hhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccc
Q 003472 551 PTVFMYNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629 (817)
Q Consensus 551 p~~~~~~~~~~v~~P~-~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~ 629 (817)
+..++.+. .+ ..| .+.+++.+. ++..+|++.-+
T Consensus 132 --------~~~~~~~~~~~-----------~~~------------------~~~l~~~i~--------~~~~lv~i~~~- 165 (397)
T TIGR01976 132 --------VKWARVDEATG-----------ELH------------------PDDLASLLS--------PRTRLVAVTAA- 165 (397)
T ss_pred --------EEEEeccccCC-----------CcC------------------HHHHHHhcC--------CCceEEEEeCC-
Confidence 00111100 00 001 245555554 23456666665
Q ss_pred ccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCCCCCcceEEEechHH
Q 003472 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAV 707 (817)
Q Consensus 630 qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~LggGy~PlsAvl~s~~i 707 (817)
....|.+.+ +++|.++|+++|+++|+||+|. .| .+.. -.. ...+|++ ++.|.+| .++|.+++++++
T Consensus 166 ~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~-~~~~-~~~--~~~~d~~~~s~~K~~g---~~~G~l~~~~~~ 233 (397)
T TIGR01976 166 SNTLGSIVD----LAAITELVHAAGALVVVDAVHY-AP-HGLI-DVQ--ATGADFLTCSAYKFFG---PHMGILWGRPEL 233 (397)
T ss_pred CCCCCccCC----HHHHHHHHHHcCCEEEEehhhh-cc-ccCC-CHH--HcCCCEEEEechhhcC---CceEEEEEcHHH
Confidence 677788876 9999999999999999999994 33 1211 112 2357877 6689874 358889999998
Q ss_pred HhhhcCCCccceeeccc------CCCCCHHHHHHHHHHHHHhcCcC-------------chhcHHHHHHHHHHHHHHHHH
Q 003472 708 FDSFVGDSKLKALLHGH------SYSAHALGCAAAAKSIKWFKDPQ-------------TNHNIIPERRILRELWDLELI 768 (817)
Q Consensus 708 ~d~~~~~~~~~~~~h~~------T~~gnPla~AAAlA~L~~l~~~~-------------l~~~l~~~~~~lg~~l~~~l~ 768 (817)
++.+..... .+.... +-+.+...+++..++++.+++.+ ..++..++...+.+++.+
T Consensus 234 ~~~l~~~~~--~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--- 308 (397)
T TIGR01976 234 LMNLPPYKL--TFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLV--- 308 (397)
T ss_pred HhhCCCccc--cCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHH---
Confidence 876643210 000000 01235566677778888875432 123344444555555444
Q ss_pred HHHHcCCCc---ce--EEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 769 QQISSHRTV---QR--VVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 769 ~~l~~~p~V---~~--VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+++.+.+ .. ..-.+-++.+.+... ....+..++.++||.
T Consensus 309 -~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~L~~~gI~ 353 (397)
T TIGR01976 309 -GLSDLPGVTLYGVARLAARVPTVSFTVHGL-------PPQRVVRRLADQGID 353 (397)
T ss_pred -HHhcCCCEEEeCCCCccCCCceEEEEeCCc-------CHHHHHHHHHHCCeE
Confidence 33333321 11 111233555554321 234566677777864
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.6e-07 Score=101.09 Aligned_cols=66 Identities=9% Similarity=0.002 Sum_probs=45.7
Q ss_pred HHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCCCCCcceEEEec-hHHHhhhc
Q 003472 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLAT-NAVFDSFV 712 (817)
Q Consensus 643 l~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~LggGy~PlsAvl~s-~~i~d~~~ 712 (817)
+++|.++|+++|+++|+||+|. +|.++........+ ..|++ +++|+++| .+.|+++++ +++.+.+.
T Consensus 182 ~~~I~~la~~~~~~livD~a~~-~g~~~~g~~~~~~~-~~di~~~S~~K~l~g--~~gg~i~~~~~~~~~~l~ 250 (416)
T PRK00011 182 FKRFREIADEVGAYLMVDMAHI-AGLVAAGVHPSPVP-HADVVTTTTHKTLRG--PRGGLILTNDEELAKKIN 250 (416)
T ss_pred HHHHHHHHHHcCCEEEEECcch-hcccccCccCCCCC-CCcEEEecCCcCCCC--CCceEEEeCCHHHHHHHH
Confidence 8999999999999999999984 44343211111122 35766 77999954 357778885 68887764
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.6e-07 Score=101.94 Aligned_cols=92 Identities=12% Similarity=-0.000 Sum_probs=57.0
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeee-eccccccccchhhhcCC
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TGFWRLGVETTADLLGC 680 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~-TGfGRtG~~~a~e~~gv 680 (817)
+.+++.+.+ ...-..++..|. .+ ...+ +++|.++|++||+++|+||+| .|+--.|... ..+.
T Consensus 151 ~~l~~~i~~------~~~~~v~~~~~~-~~---~~~~----~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~--~~~~- 213 (402)
T cd00378 151 DALEKMALE------FKPKLIVAGASA-YP---RPID----FKRFREIADEVGAYLLVDMAHVAGLVAGGVFP--NPLP- 213 (402)
T ss_pred HHHHHHHHh------CCCCEEEecCcc-cC---CCcC----HHHHHHHHHhcCCEEEEEccchhhhhhcccCC--Cccc-
Confidence 456666642 112234455765 33 3333 889999999999999999998 3431112111 1112
Q ss_pred CCcee--ecccccCCCCCcceEEEech-HHHhhhc
Q 003472 681 VPDIA--CYGKLLTGGVIPLAATLATN-AVFDSFV 712 (817)
Q Consensus 681 ~PDiv--tlgK~LggGy~PlsAvl~s~-~i~d~~~ 712 (817)
..|++ +++|++ .| .+.|++++++ ++++.+.
T Consensus 214 ~~dv~~~s~sK~l-~G-~~gg~i~~~~~~~~~~l~ 246 (402)
T cd00378 214 GADVVTTTTHKTL-RG-PRGGLILTRKGELAKKIN 246 (402)
T ss_pred CCcEEEeccccCC-CC-CCceEEEeccHHHHHHHH
Confidence 35866 678999 44 4678888877 8877764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-06 Score=97.66 Aligned_cols=306 Identities=10% Similarity=0.047 Sum_probs=165.8
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCC------CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPE------NVYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~------~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA 473 (817)
-|||-.+ .|-- .+.+.+|+.+.+.......... ...+...++-++|+++++....+.+.|+++++++
T Consensus 21 ~yld~a~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~ 93 (401)
T PRK10874 21 VYLDSAA------TALK-PQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTES 93 (401)
T ss_pred EEEeCCc------ccCC-CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHH
Confidence 6787544 4555 7899999988776532111000 0123455677788888874223579999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcc
Q 003472 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (817)
Q Consensus 474 ~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (817)
+..+++... .... ....+||..+..|++....-..+... .|.
T Consensus 94 i~~~~~~~~---~~~~--------------~~gd~vl~~~~~~~s~~~~~~~~~~~--------------~g~------- 135 (401)
T PRK10874 94 INLVAQSYA---RPRL--------------QPGDEIIVSEAEHHANLVPWLMVAQQ--------------TGA------- 135 (401)
T ss_pred HHHHHHHhh---hccC--------------CCcCEEEECCcchHHHHHHHHHHHHH--------------hCC-------
Confidence 998887651 0000 11236888877777631111111000 000
Q ss_pred cccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 003472 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (817)
Q Consensus 554 ~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~g 633 (817)
.+..++.+..+ ..| .+.+++.+. + +..+|++.-+ ....
T Consensus 136 ----~v~~v~~~~~~-----------~~d------------------~~~l~~~i~-------~-~t~lv~i~~~-~n~t 173 (401)
T PRK10874 136 ----KVVKLPLGADR-----------LPD------------------VDLLPELIT-------P-RTRILALGQM-SNVT 173 (401)
T ss_pred ----EEEEEecCCCC-----------cCC------------------HHHHHHhcC-------c-CcEEEEEeCC-cccc
Confidence 00111111000 001 245665554 1 3345555554 6677
Q ss_pred CcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCC-CCCcceEEEechHHHhh
Q 003472 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTG-GVIPLAATLATNAVFDS 710 (817)
Q Consensus 634 G~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~Lgg-Gy~PlsAvl~s~~i~d~ 710 (817)
|.+.+ +++|.++|+++|+++|+|++|. +|..- .+.....+|+++++ |.+|- | +|.+.+++++.+.
T Consensus 174 G~~~~----~~~i~~l~~~~g~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~~gp~G---~G~l~~~~~~~~~ 241 (401)
T PRK10874 174 GGCPD----LARAITLAHQAGMVVMVDGAQG-AVHFP----ADVQALDIDFYAFSGHKLYGPTG---IGVLYGKSELLEA 241 (401)
T ss_pred cCcCC----HHHHHHHHHHcCCEEEEECCcc-ccccc----CCchhcCCCEEEEecccccCCCc---cEEEEEchHHHhc
Confidence 88876 8999999999999999999994 44331 11122358988776 96542 3 5788899998876
Q ss_pred hcCCC---cc-ce----------eecccC-CCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 711 FVGDS---KL-KA----------LLHGHS-YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 711 ~~~~~---~~-~~----------~~h~~T-~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
+..-. .. .. ...... -+.|..+.++..++++.+++.+. +++.++.+.+.+++.+ .+++.|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~-~~~~~~~~~l~~~l~~----~l~~~~ 316 (401)
T PRK10874 242 MSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDI-NQAESWSRSLATLAED----ALAKLP 316 (401)
T ss_pred CCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHH----HHhcCC
Confidence 53110 00 00 000000 12355677788888888865332 3345555555554443 444554
Q ss_pred CcceEE-eeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 776 TVQRVV-ALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 776 ~V~~Vr-G~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+.-++ ..+.++.+.+... ....+...+.++||.
T Consensus 317 g~~~~~~~~~~i~~~~~~~~-------~~~~~~~~L~~~gI~ 351 (401)
T PRK10874 317 GFRSFRCQDSSLLAFDFAGV-------HHSDLVTLLAEYGIA 351 (401)
T ss_pred CEEEeCCCCCcEEEEEECCc-------CHHHHHHHHHHCCcE
Confidence 332221 1233556665321 224555666677773
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.5e-07 Score=104.41 Aligned_cols=147 Identities=16% Similarity=0.127 Sum_probs=93.5
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC--C
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG--G 694 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg--G 694 (817)
++.+|++|.. ....|.+.+ +++|.++|+++|+++|+||++..+ -... ......|++ +++|.++| +
T Consensus 130 ~tklV~l~sp-~NPtG~v~d----~~~I~~la~~~g~~vivDea~~~~-~~~~-----~l~~~~divv~S~sK~l~G~~~ 198 (376)
T PRK06460 130 RYDVVFVENI-TNPLLRVVD----ITELSKVCKENGSILIVDATFSTP-INQK-----PLELGADIVVHSASKFLAGHND 198 (376)
T ss_pred CceEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCcCcc-ccCC-----hhhcCCCEEEeecceeccCCCC
Confidence 4568888887 777787776 678999999999999999998422 1111 111235776 78999974 2
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
.-+|.+++++++++.+... ....+...+|..+..++..++.++. ..+++.+++..+.+.| +++
T Consensus 199 -~~~G~~~~~~~l~~~l~~~------~~~~g~~~~~~~a~~~l~~~~~l~~--r~~~~~~n~~~l~~~L--------~~~ 261 (376)
T PRK06460 199 -VIAGLAAGYGKLLNVIDQM------RRTLGTSLDPHAAYLTLRGIKTLKI--RMDVINRNAEQIAEFL--------EGH 261 (376)
T ss_pred -ceEEEEecCHHHHHHHHHH------HHhcCCCCCHHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHH--------HcC
Confidence 2356688888888877421 1122334567666666666666632 2344555555554433 333
Q ss_pred CCcceE------------------EeeeeEEEEEEec
Q 003472 775 RTVQRV------------------VALGTLCAIELQA 793 (817)
Q Consensus 775 p~V~~V------------------rG~Glm~gIel~~ 793 (817)
|.|..| .|.|-|+.|++..
T Consensus 262 p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~ 298 (376)
T PRK06460 262 PKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNG 298 (376)
T ss_pred CCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence 433222 4789999999974
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.5e-07 Score=98.93 Aligned_cols=137 Identities=14% Similarity=0.092 Sum_probs=81.6
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCCCCC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVI 696 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~LggGy~ 696 (817)
++.+|++... ....|.+.+ +++|.++|+++|+++|+||+| ++|...-. .+ ...+|+++++ |.+++. -
T Consensus 137 ~~~~v~~~~~-~n~tG~~~~----~~~i~~l~~~~~~~livD~a~-~~g~~~~~--~~--~~~~D~~~~s~~K~l~~p-~ 205 (376)
T TIGR01977 137 NTKLIVVSHA-SNVTGTILP----IEEIGELAQENGIFFILDAAQ-TAGVIPID--MT--ELAIDMLAFTGHKGLLGP-Q 205 (376)
T ss_pred CCeEEEEECC-CCCccccCC----HHHHHHHHHHcCCEEEEEhhh-ccCccCCC--ch--hcCCCEEEecccccccCC-C
Confidence 3556666665 677888887 889999999999999999999 46544211 11 2357887654 988763 2
Q ss_pred cceEEEechHHH-hhhcCCC-cccee-e-------c-ccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHH
Q 003472 697 PLAATLATNAVF-DSFVGDS-KLKAL-L-------H-GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDL 765 (817)
Q Consensus 697 PlsAvl~s~~i~-d~~~~~~-~~~~~-~-------h-~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~ 765 (817)
.+|+++++++.. ..+.... ..... . . ..+.+.+...+++..++|+.+.+.+. +++.++...+.+++.+
T Consensus 206 g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~-~~~~~~~~~l~~~~~~ 284 (376)
T TIGR01977 206 GTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGI-ANIAKKECMLTEKLLN 284 (376)
T ss_pred CceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHH
Confidence 356676676641 1111100 00000 0 0 00113456777778889999876432 4555666666665555
Q ss_pred HH
Q 003472 766 EL 767 (817)
Q Consensus 766 ~l 767 (817)
.+
T Consensus 285 ~l 286 (376)
T TIGR01977 285 GL 286 (376)
T ss_pred HH
Confidence 43
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.1e-07 Score=100.61 Aligned_cols=268 Identities=10% Similarity=-0.005 Sum_probs=150.6
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCC------CChHHHHHHHHHHhhcCCCCcceEEEeCChHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN------VYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~------~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA 473 (817)
-|||..+ .|-- .+.|.+|+.+.+.........+. ..+...++-+.|+++++....+.++|+++++++
T Consensus 25 iYld~a~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~ 97 (406)
T PRK09295 25 AYLDSAA------SAQK-PSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEG 97 (406)
T ss_pred EEEeCcc------cccC-CHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHH
Confidence 6888654 3455 88999999888765321110001 123455677778888764113579999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcc
Q 003472 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (817)
Q Consensus 474 ~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (817)
+..+++.. ....-+ ...+||..+..||+....-..+... .|.
T Consensus 98 l~~~~~~~-~~~~~~----------------~gd~vl~~~~~~~s~~~~~~~~~~~--------------~g~------- 139 (406)
T PRK09295 98 INLVANSW-GNSNVR----------------AGDNIIISEMEHHANIVPWQMLCAR--------------VGA------- 139 (406)
T ss_pred HHHHHHHh-hhhcCC----------------CcCEEEECcchhhHHHHHHHHHHHH--------------cCc-------
Confidence 99888754 110001 1236777777776532111111000 000
Q ss_pred cccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 003472 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (817)
Q Consensus 554 ~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~g 633 (817)
.+..++.+... ..| .+.+++.+. .++..|++.-+ ...-
T Consensus 140 ----~v~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~t~lv~l~~~-~n~t 177 (406)
T PRK09295 140 ----ELRVIPLNPDG-----------TLQ------------------LETLPALFD--------ERTRLLAITHV-SNVL 177 (406)
T ss_pred ----EEEEEecCCCC-----------CCC------------------HHHHHHhcC--------CCcEEEEEecc-hhcc
Confidence 00111111000 001 144555553 13455666555 6777
Q ss_pred CcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCCCCCcceEEEechHHHhhh
Q 003472 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF 711 (817)
Q Consensus 634 G~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~LggGy~PlsAvl~s~~i~d~~ 711 (817)
|.+.+ +++|.++|+++|+++|+|++|+ +|..- .-.+ ...+|+++++ |.+|- .-+|.+.+++++.+.+
T Consensus 178 G~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~~--~~~~--~~~~D~~~~s~~K~~gp--~G~G~l~~~~~~~~~~ 246 (406)
T PRK09295 178 GTENP----LAEMIALAHQHGAKVLVDGAQA-VMHHP--VDVQ--ALDCDFYVFSGHKLYGP--TGIGILYVKEALLQEM 246 (406)
T ss_pred cccCC----HHHHHHHHHHcCCEEEEEcccc-cCccc--cCch--hcCCCEEEeehhhccCC--CCcEEEEEchHhHhhC
Confidence 88887 8999999999999999999994 54331 1111 2357998776 95542 1268888999887654
Q ss_pred cCC---Ccc-ce--eecc----------cCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHH
Q 003472 712 VGD---SKL-KA--LLHG----------HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLE 766 (817)
Q Consensus 712 ~~~---~~~-~~--~~h~----------~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~ 766 (817)
... ... .. .... .+-+.|..++++..++++.+.+.+. +++.++.+.+.+++.+.
T Consensus 247 ~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~-~~i~~~~~~l~~~l~~~ 316 (406)
T PRK09295 247 PPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGL-NNIAEYEQNLMHYALSQ 316 (406)
T ss_pred CCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHH
Confidence 310 000 00 0000 0114577888889999999876443 45556666666655443
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.2e-07 Score=105.25 Aligned_cols=236 Identities=13% Similarity=0.106 Sum_probs=134.6
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.+. +....++||++|+..++.... .. ...||.....|.+.
T Consensus 58 ~~~p~~~~Le~~lA~~~g~---~~~i~~~sG~~Ai~~~l~all-----~~----------------Gd~Vl~~~~~y~~t 113 (388)
T PRK07811 58 TGNPTRTALEEQLAALEGG---AYGRAFSSGMAATDCLLRAVL-----RP----------------GDHIVIPNDAYGGT 113 (388)
T ss_pred CCCccHHHHHHHHHHHhCC---CceEEeCCHHHHHHHHHHHHh-----CC----------------CCEEEEcCCCchHH
Confidence 3456778999999999874 466777899999999987662 11 13677777777542
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
...+... .+ ..+.- +.+.+.. |
T Consensus 114 -~~~~~~~----~~---------~~gi~------------------------------~~~~d~~-------d------- 135 (388)
T PRK07811 114 -FRLIDKV----FT---------RWGVE------------------------------YTPVDLS-------D------- 135 (388)
T ss_pred -HHHHHHh----Cc---------CCCeE------------------------------EEEeCCC-------C-------
Confidence 2111110 00 00000 0011100 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.+. .++.+|++|-. ..-.|.+.. +++|.++|+++|+++|+||++. .+-.+.. .+
T Consensus 136 -~e~l~~~i~--------~~tklV~ie~p-~NPtg~~~d----l~~I~~la~~~gi~lIvD~a~a-~~~~~~p-----~~ 195 (388)
T PRK07811 136 -LDAVRAAIT--------PRTKLIWVETP-TNPLLSITD----IAALAELAHDAGAKVVVDNTFA-SPYLQQP-----LA 195 (388)
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCcceecC----HHHHHHHHHHcCCEEEEECCCC-ccccCCc-----hh
Confidence 144555554 24678888865 555565554 9999999999999999999984 3222221 22
Q ss_pred CCCcee--ecccccCC-CCCcceEEEec-hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHH
Q 003472 680 CVPDIA--CYGKLLTG-GVIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (817)
Q Consensus 680 v~PDiv--tlgK~Lgg-Gy~PlsAvl~s-~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~ 755 (817)
.-.|++ .++|.++| |-.-.|+++++ +++.+.+... ........+|..++.++..|+.+.. ..++..++
T Consensus 196 ~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~------~~~~g~~~s~~~a~l~~~~L~tl~~--R~~~~~~n 267 (388)
T PRK07811 196 LGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFL------QNGAGAVPGPFDAYLTLRGLKTLAV--RMDRHSEN 267 (388)
T ss_pred hCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHH------HHhcCCCCCHHHHHHHHhccCcHHH--HHHHHHHH
Confidence 346876 56899986 21234666664 5655544210 1111223457777666666655422 12333334
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcceE------------------EeeeeEEEEEEec
Q 003472 756 RRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (817)
Q Consensus 756 ~~~lg~~l~~~l~~~l~~~p~V~~V------------------rG~Glm~gIel~~ 793 (817)
+..+. +.+++||.|..| .|.|.|+.|+|..
T Consensus 268 a~~la--------~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 315 (388)
T PRK07811 268 AEAVA--------EFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAG 315 (388)
T ss_pred HHHHH--------HHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCC
Confidence 44333 344555554433 3667799999964
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=4e-07 Score=100.50 Aligned_cols=294 Identities=10% Similarity=-0.010 Sum_probs=152.1
Q ss_pred eeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHH
Q 003472 401 QFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKM 480 (817)
Q Consensus 401 ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alkl 480 (817)
+||+.| +.+-| - +|.+.+|+.+.......+ +..+...+|.+.|+++.| .+.+.++++|++|+..++..
T Consensus 1 ~~~~~~---~~~~~-p-~~~~~~a~~~~~~~~~~Y----~~~~~~~~L~~~la~~~g---~~~~~v~~~g~~a~~~~l~~ 68 (333)
T PRK10534 1 MIDLRS---DTVTR-P-SRAMLEAMMAAPVGDDVY----GDDPTVNALQDYAAELSG---KEAALFLPTGTQANLVALLS 68 (333)
T ss_pred Cccccc---ccCCC-C-CHHHHHHHHhccCCCccc----CCCHHHHHHHHHHHHHhC---CCeEEEeCchHHHHHHHHHH
Confidence 368887 66667 6 899999987754432211 146778899999999987 46778999999998888875
Q ss_pred HHHHhhccccccccccCCCccccccceEEEEEcCCccCCcccc--ccccCCCCCCCcCCCCCccCCccccCCCcccccCc
Q 003472 481 AFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA--MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (817)
Q Consensus 481 A~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~ga--lslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (817)
.. . ++ ..|+.. ..+|...+.+ ....+.. .
T Consensus 69 ~~-----~---------------~g-d~vi~~-~~~~~~~~~~~~~~~~~~~---~------------------------ 99 (333)
T PRK10534 69 HC-----E---------------RG-EEYIVG-QAAHNYLYEAGGAAVLGSI---Q------------------------ 99 (333)
T ss_pred hc-----C---------------CC-CeeEEe-chhhhhHhcCCchHHhcCc---e------------------------
Confidence 41 1 11 244533 3333211111 0111000 0
Q ss_pred ceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003472 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (817)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~p 638 (817)
...++....+ ..| .+.|++.+.+.. .+..+..+|+++-- . .|.+.
T Consensus 100 ~~~~~~~~~~-----------~~d------------------~~~l~~~i~~~~--~~~~~~~lv~l~np-~--~G~v~- 144 (333)
T PRK10534 100 PQPIDAAADG-----------TLP------------------LDKVAAKIKPDD--IHFARTRLLSLENT-H--NGKVL- 144 (333)
T ss_pred EEeecCCCCC-----------CCC------------------HHHHHHhhcccC--cCcccceEEEEecC-C--CCeec-
Confidence 0000000000 001 144555553200 01113455666542 2 36666
Q ss_pred CHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc-hhhhcCCCCc--eeecccccCCCCCcce-EEEechHHHhhhcCC
Q 003472 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD--IACYGKLLTGGVIPLA-ATLATNAVFDSFVGD 714 (817)
Q Consensus 639 p~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~-a~e~~gv~PD--ivtlgK~LggGy~Pls-Avl~s~~i~d~~~~~ 714 (817)
+.+.++++.++|++||+++|+||++. |+..+... ......-.+| +++++|++|. ++| ++++++++++.+..-
T Consensus 145 ~~~~l~~i~~~~~~~~~~lvvDEA~~-~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~---~~G~~~~~~~~~i~~~~~~ 220 (333)
T PRK10534 145 PREYLKQAWEFTRERNLALHVDGARI-FNAVVAYGCELKEITQYCDSFTICLSKGLGT---PVGSLLVGNRDYIKRARRW 220 (333)
T ss_pred CHHHHHHHHHHHHHcCCeEEeeHHHH-HHHHHHcCCCHHHHHhcCCEEEEEeEcCCCC---cccceEEcCHHHHHHHHHH
Confidence 67778999999999999999999874 43221100 0111111234 4589997653 466 477899998877421
Q ss_pred CccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecC
Q 003472 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (817)
Q Consensus 715 ~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~ 794 (817)
. ...+..+.-+.++.+++.++|+... +.+.++. ..+++ +.+.+++.++ .-....+-++-+.+...
T Consensus 221 ~----~~~~~~~~~~~~~~a~~~~~l~~~~-----~~~~~~~-~~r~~----l~~~L~~~g~-~~~~~~~nfv~~~~~~~ 285 (333)
T PRK10534 221 R----KMTGGGMRQAGILAAAGLYALKHNV-----ARLQEDH-DNAAW----LAEQLREAGA-DVMRQDTNMLFVRVGEE 285 (333)
T ss_pred H----HHhCCchhhHHHHHHHHHHHHHhhH-----HHHHHHH-HHHHH----HHHHHHhCCC-ccCCCCceEEEEECCch
Confidence 0 0111222334466677777765321 2222211 11232 3333333332 11122355666655321
Q ss_pred CCCCCcchHHHHHHHHHHcCCC
Q 003472 795 GCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 795 ~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
....+...+.++||+
T Consensus 286 -------~~~~~~~~l~~~gi~ 300 (333)
T PRK10534 286 -------QAAALGEYMRERNVL 300 (333)
T ss_pred -------hHHHHHHHHHHcCee
Confidence 234566777788875
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.9e-07 Score=102.05 Aligned_cols=260 Identities=10% Similarity=0.026 Sum_probs=149.5
Q ss_pred CCCCCCHHHHHHHHHHHHhc-cccCC-CC----CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhh
Q 003472 413 PDATLQIELARDMGYTAARF-GHVMF-PE----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486 (817)
Q Consensus 413 LGh~~hP~V~~Ai~~q~~~~-~~~~~-~~----~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t 486 (817)
.+-- .+++.+|+.+.+... ..... .. ...+...++.++|+++++.. .+.+.|+++|++|+..+++.+++.+.
T Consensus 8 ~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~t~~~t~a~~~~l~~~~~~~~ 85 (364)
T PLN02651 8 TTPI-DPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGAD-PKEIIFTSGATESNNLAIKGVMHFYK 85 (364)
T ss_pred CCCC-CHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHHHHHHHHHHHHHhcc
Confidence 3445 899999998877542 21110 00 01234557778888888743 35799999999999999988732221
Q ss_pred ccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCc
Q 003472 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566 (817)
Q Consensus 487 ~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~ 566 (817)
.. ..+||.....|++ .......-.. . |. .+..++.+.
T Consensus 86 -~~----------------g~~vl~~~~~h~s-~~~~~~~~~~----~----------g~-----------~v~~v~~~~ 122 (364)
T PLN02651 86 -DK----------------KKHVITTQTEHKC-VLDSCRHLQQ----E----------GF-----------EVTYLPVKS 122 (364)
T ss_pred -CC----------------CCEEEEcccccHH-HHHHHHHHHh----c----------CC-----------EEEEEccCC
Confidence 11 2356665544443 2222111000 0 00 001111110
Q ss_pred hhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHH
Q 003472 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646 (817)
Q Consensus 567 ~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~L 646 (817)
... .| .+.+++.++ +++..|++..+ ....|.+.+ +++|
T Consensus 123 ~~~-----------~d------------------~~~l~~~i~--------~~t~lv~v~~~-~n~tG~~~~----l~~I 160 (364)
T PLN02651 123 DGL-----------VD------------------LDELAAAIR--------PDTALVSVMAV-NNEIGVIQP----VEEI 160 (364)
T ss_pred CCc-----------CC------------------HHHHHHhcC--------CCcEEEEEECC-CCCceeccc----HHHH
Confidence 000 00 245666664 23567788776 777888887 8999
Q ss_pred HHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeec--ccccCCCCCcceEEEechHHHhhhcCCCccceeecc-
Q 003472 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHG- 723 (817)
Q Consensus 647 r~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~- 723 (817)
.++|+++|+++++|.+|+ +|.. .+-.+ ....|++++ -| ++|. ..+|++.++++..+.+...........+
T Consensus 161 ~~~~~~~g~~~~vD~a~~-~g~~--~~~~~--~~~~D~~~~s~hK-~~gp-~G~g~l~v~~~~~~~l~p~~~g~~~~~~~ 233 (364)
T PLN02651 161 GELCREKKVLFHTDAAQA-VGKI--PVDVD--DLGVDLMSISGHK-IYGP-KGVGALYVRRRPRVRLEPLMSGGGQERGR 233 (364)
T ss_pred HHHHHHcCCEEEEEcchh-hCCc--ccCcc--cCCCCEEEechhh-hCCC-CceEEEEEcCCCCCCCCccccCCCccCCc
Confidence 999999999999999995 4321 12222 234698866 45 6433 3478888998766554311000000000
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHH
Q 003472 724 HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELI 768 (817)
Q Consensus 724 ~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~ 768 (817)
...+-|..++++..++|+++.+. .+++.++.+.+.+++.+.+.
T Consensus 234 ~~GT~~~~~~~~l~~al~~~~~~--~~~i~~~~~~l~~~l~~~l~ 276 (364)
T PLN02651 234 RSGTENTPLVVGLGAACELAMKE--MDYDEKHMKALRERLLNGLR 276 (364)
T ss_pred cCCCccHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHH
Confidence 12235677788888999998652 36677777778777766543
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-06 Score=98.22 Aligned_cols=169 Identities=10% Similarity=0.037 Sum_probs=98.6
Q ss_pred ccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCCCCCcceEEEechHH
Q 003472 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAV 707 (817)
Q Consensus 630 qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~LggGy~PlsAvl~s~~i 707 (817)
....|...+ +++|.++|+++|+++|+|.+| +||... . ......+|++ +..|.+.|. .-+|.+++++++
T Consensus 141 ~~~tG~~~~----~~~i~~l~~~~~~~livDa~~-~~g~~~--~--~~~~~~~d~~v~s~~K~l~g~-~G~G~l~~~~~~ 210 (368)
T PRK13479 141 ETTTGILNP----LDEIAAVAKRHGKRLIVDAMS-SFGAIP--I--DIAELGIDALISSANKCIEGV-PGFGFVIARRSE 210 (368)
T ss_pred cCccccccC----HHHHHHHHHHcCCEEEEEccc-ccCCcc--c--cccccCceEEEecCccccccC-CCceEEEECHHH
Confidence 344677776 899999999999999999888 565422 1 1122347876 678988653 235889999998
Q ss_pred HhhhcCCCcccee-----------ecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC
Q 003472 708 FDSFVGDSKLKAL-----------LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (817)
Q Consensus 708 ~d~~~~~~~~~~~-----------~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~ 776 (817)
.+.+........+ .....|+.+..+.++..++++.+.+++..++..++.....+++.+.+ ++.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L----~~~g~ 286 (368)
T PRK13479 211 LEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGM----RALGF 286 (368)
T ss_pred HHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH----HHcCC
Confidence 8876542210000 01112456777778888889888654434455555556666555433 33332
Q ss_pred --cce-EEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 777 --VQR-VVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 777 --V~~-VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.. ....+....+.+.... + .....+...+.++||.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~l~~~L~~~gi~ 325 (368)
T PRK13479 287 EPLLDAEIQSPIIVTFHAPADP---A-YDFKEFYERLKEQGFV 325 (368)
T ss_pred cccCCchhcCceEEEEECCCCC---C-cCHHHHHHHHHHCCEE
Confidence 111 1112233444433221 1 1235678888888874
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.2e-07 Score=105.04 Aligned_cols=236 Identities=14% Similarity=0.106 Sum_probs=141.5
Q ss_pred CCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccC
Q 003472 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (817)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG 518 (817)
.+.++...+|+++|+++.+. +.+++++||++|+..++.... . + ...|++...+|.+
T Consensus 47 R~~~p~~~~le~~lA~l~g~---~~v~~~~gg~~Ai~~~l~all-----~---------------~-GD~Vl~~~p~y~~ 102 (382)
T TIGR02080 47 RSGNPTRDLLQQALAELEGG---AGAVVTNTGMSAIHLVTTALL-----G---------------P-DDLLVAPHDCYGG 102 (382)
T ss_pred CCCCchHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHHc-----C---------------C-CCEEEEcCCCcHH
Confidence 34567788999999998873 579999999999998887652 1 1 1367777777765
Q ss_pred CccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHH
Q 003472 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (817)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~ 598 (817)
.......+.... + ..+. +.+. .|
T Consensus 103 ~~~~~~~~~~~~--------------~--------------~~v~----------------~~d~-------~d------ 125 (382)
T TIGR02080 103 TYRLLNALAKKG--------------C--------------FRVL----------------FVDQ-------GD------ 125 (382)
T ss_pred HHHHHHHHHhhc--------------C--------------eEEE----------------EECC-------CC------
Confidence 221111111000 0 0000 1000 00
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhc
Q 003472 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (817)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~ 678 (817)
.+.+++.++ .++.+|++|-. ..-.|.+.+ +++|.++|+++|+++|+||++..+ ..-. -+
T Consensus 126 --~~~l~~ai~--------~~tklV~l~~p-~NPtG~~~d----l~~I~~la~~~g~~vvvD~a~~~~-~~~~-----pl 184 (382)
T TIGR02080 126 --EQALRAALA--------QKPKLVLIETP-SNPLLRVVD----IAKICHLAKAVGAVVVVDNTFLSP-ALQN-----PL 184 (382)
T ss_pred --HHHHHHhcC--------cCceEEEEECC-CCCCCEecC----HHHHHHHHHHcCCEEEEECCCccc-ccCC-----ch
Confidence 144555554 23567888865 556677665 789999999999999999999421 1111 11
Q ss_pred CCCCcee--ecccccCC--CCCcceEEEe-chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHH
Q 003472 679 GCVPDIA--CYGKLLTG--GVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (817)
Q Consensus 679 gv~PDiv--tlgK~Lgg--Gy~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~ 753 (817)
....|++ +++|-++| + +-.|++++ ++++.+.+... ....+...+|+.|..++..|+.+.. ..++..
T Consensus 185 ~~gaDivv~S~sK~l~G~~~-~~~G~i~~~~~~~~~~l~~~------~~~~g~~~sp~~a~l~lr~l~tl~~--R~~~~~ 255 (382)
T TIGR02080 185 ALGADLVLHSCTKYLNGHSD-VIAGAVIAKDPQVAEELAWW------ANNLGVTGGAFDSYLTLRGLRTLVA--RMRLQQ 255 (382)
T ss_pred hhCCCEEEeecceeccCCCC-ceeEEEEeCCHHHHHHHHHH------HHccCCCCCHHHHHHHHcccchHHH--HHHHHH
Confidence 2235877 77998875 3 34555555 56666655311 1222445789999888777776633 123444
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcceE------------------EeeeeEEEEEEec
Q 003472 754 PERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (817)
Q Consensus 754 ~~~~~lg~~l~~~l~~~l~~~p~V~~V------------------rG~Glm~gIel~~ 793 (817)
+++..+.+ .++.||.|..| .|.|.|+.|+|..
T Consensus 256 ~na~~~a~--------~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 305 (382)
T TIGR02080 256 RNAQAIVE--------YLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKG 305 (382)
T ss_pred HHHHHHHH--------HHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecC
Confidence 44544444 34455554433 3788999999964
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.4e-06 Score=98.06 Aligned_cols=185 Identities=15% Similarity=0.099 Sum_probs=107.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhc-CCcEEEeeeeeccccccccchhhhcCC
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR-KIPVIFDEVFTGFWRLGVETTADLLGC 680 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~-GilLI~DEV~TGfGRtG~~~a~e~~gv 680 (817)
+.+++.++. ++.++++=|-.+.=-|.+. +++.+++|.++|+++ ++++|.||+..-|...+..-... ..
T Consensus 202 ~~l~~~~~~--------~~k~i~~~p~p~NPTG~~~-s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~--~~ 270 (431)
T PRK15481 202 EKLERALAQ--------GARAVILTPRAHNPTGCSL-SARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIP--QT 270 (431)
T ss_pred HHHHHHHhc--------CCCEEEECCCCCCCCCccC-CHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCc--CC
Confidence 456666642 2334444332144456665 788999999999999 99999999987662112110010 11
Q ss_pred CCcee---ecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHH
Q 003472 681 VPDIA---CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERR 757 (817)
Q Consensus 681 ~PDiv---tlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~ 757 (817)
.+.++ +|||.+|.| +-+|.+++.+++.+.+... ....+++.+.++..++.++|+ +.++.+.+.+..+
T Consensus 271 ~~~vi~~~SfSK~~~~G-lRiG~~i~~~~~~~~~~~~------~~~~~~~~s~~~q~a~~~~l~---~~~~~~~l~~~~~ 340 (431)
T PRK15481 271 TQRWALIRSVSKALGPD-LRLAFVASDSATSARLRLR------LNSGTQWVSHLLQDLVYACLT---DPEYQARLAQARL 340 (431)
T ss_pred CCCEEEEeeeccccCCC-ceeEEEeCCHHHHHHHHHH------HhccccCCCHHHHHHHHHHHh---CccHHHHHHHHHH
Confidence 23333 899999999 8999999999998887421 122334567777777766664 3333223333333
Q ss_pred HHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 758 ILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 758 ~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+.+. ++.+.+.++++..-.....-|+++-+++..+ ...+...+.++||+
T Consensus 341 ~~~~~-r~~~~~~L~~~~~~~~~p~gg~f~~~~l~~~--------~~~~~~~l~~~gV~ 390 (431)
T PRK15481 341 FYAQR-RQKLARALQQYGIAIPSPGDGLNLWLPLDTD--------SQATALTLAKSGWL 390 (431)
T ss_pred HHHHH-HHHHHHHHHHcCCccccCCCeEEEEEECCCC--------HHHHHHHHHHCCcE
Confidence 33332 1234445555543111233477877777432 24566777788874
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.8e-07 Score=101.94 Aligned_cols=280 Identities=12% Similarity=0.051 Sum_probs=149.8
Q ss_pred HHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCcc
Q 003472 422 ARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTT 501 (817)
Q Consensus 422 ~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~ 501 (817)
.+++.+++...... ..+...+|+++|+++++. +++++++||++|+..|++.+.+.+..+.+.
T Consensus 47 ~~a~~~~~~~~~~~-----~G~~~~~fe~~lA~~~g~---~~~v~~~sGt~al~~aL~al~~~~~~~~~~---------- 108 (438)
T PRK15407 47 LQNLVDASLDFWLT-----TGRFNDAFEKKLAEFLGV---RYALLVNSGSSANLLAFSALTSPKLGDRAL---------- 108 (438)
T ss_pred HHHHHHHHHhCccc-----CChhHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHHhhccccccCC----------
Confidence 45555555543221 134577899999999883 579999999999999998762222111111
Q ss_pred ccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecC-Cchhhhcccccccccc
Q 003472 502 EKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDITF 580 (817)
Q Consensus 502 ~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~-P~~~~~~~~~~~d~~~ 580 (817)
.....||+-..+|.+... ++...|... ..++. +. ++
T Consensus 109 --~pGd~VIv~~~t~~a~~~-~v~~~G~~p----------------------------v~vdvd~~------------~~ 145 (438)
T PRK15407 109 --KPGDEVITVAAGFPTTVN-PIIQNGLVP----------------------------VFVDVELP------------TY 145 (438)
T ss_pred --CCCCEEEECCCCcHHHHH-HHHHcCCEE----------------------------EEEecCCC------------cC
Confidence 112467777777765332 222211100 00000 00 01
Q ss_pred cCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEe
Q 003472 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFD 660 (817)
Q Consensus 581 ~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~D 660 (817)
+ + | .+.+++.+. .++.+|++.+. .|. +..+++|+++|+++|+++|.|
T Consensus 146 ~-i--------d--------~~~le~~i~--------~~tkaVi~~~~-~G~-------p~dl~~I~~la~~~gi~vIeD 192 (438)
T PRK15407 146 N-I--------D--------ASLLEAAVS--------PKTKAIMIAHT-LGN-------PFDLAAVKAFCDKHNLWLIED 192 (438)
T ss_pred C-c--------C--------HHHHHHHcC--------cCCeEEEEeCC-CCC-------hhhHHHHHHHHHHCCCEEEEE
Confidence 1 0 0 144555553 25678888875 332 345899999999999999999
Q ss_pred eeeeccccccccchhhhcCCCCceeecc----cccCCCCCcceEEEechHHH-hhh---cCCCcc---------------
Q 003472 661 EVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLATNAVF-DSF---VGDSKL--------------- 717 (817)
Q Consensus 661 EV~TGfGRtG~~~a~e~~gv~PDivtlg----K~LggGy~PlsAvl~s~~i~-d~~---~~~~~~--------------- 717 (817)
++|+ +|-+ +.-...|---|+.+|| |.++.| .-|+++++++-. +.+ ......
T Consensus 193 aa~a-~G~~---~~g~~~G~~gd~~~fSf~~~k~~~~g--eGG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 266 (438)
T PRK15407 193 NCDA-LGST---YDGRMTGTFGDIATLSFYPAHHITMG--EGGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRF 266 (438)
T ss_pred Cccc-hhhh---cCCeeeeccCceEEEeCCCCCCcccc--CceEEEECCHHHHHHHHHHHHhCccccccccccccccccc
Confidence 9995 4322 1111222233777665 556544 235666654433 221 111000
Q ss_pred --------c----e---eecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC------C
Q 003472 718 --------K----A---LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR------T 776 (817)
Q Consensus 718 --------~----~---~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p------~ 776 (817)
. . ...|+.|.-+.+.+|.+++-|+.+++ ..++-+...+++.+. ++..+ .
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l~~------~~~~R~~~a~~y~~~----L~~~~~~~~~~~ 336 (438)
T PRK15407 267 GWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKLPG------FIEARKANFAYLKEG----LASLEDFLILPE 336 (438)
T ss_pred ccccccccccccccccccccccccCccHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH----hccCCCccccCc
Confidence 0 0 01355667789999999999999854 222222333333332 33332 1
Q ss_pred -cceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCC
Q 003472 777 -VQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGM 815 (817)
Q Consensus 777 -V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv 815 (817)
..+....-.++.|.+.+.. ......+...+.++||
T Consensus 337 ~~~~~~~~~~~~~i~~~~~~----~~~Rd~l~~~L~~~GI 372 (438)
T PRK15407 337 ATPNSDPSWFGFPITVKEDA----GFTRVELVKYLEENKI 372 (438)
T ss_pred CCCCCeeEEEEEEEEECCcC----CCCHHHHHHHHHHCCC
Confidence 1122222234455553321 1235678888888887
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.4e-07 Score=105.70 Aligned_cols=145 Identities=14% Similarity=0.085 Sum_probs=90.5
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC-CC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg-Gy 695 (817)
+..+|++|-. ....|.+.+ +++|.++|++||+++|+||++. .+-.+.. .+...|++ .+.|.|+| |
T Consensus 217 ~TklV~lesP-sNPtG~i~D----l~~I~~lAk~~g~~lIVD~A~a-~~~~~~p-----l~~gaDivv~S~tK~l~G~g- 284 (464)
T PLN02509 217 QTKLVWLESP-TNPRQQISD----IRKIAEMAHAQGALVLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHS- 284 (464)
T ss_pred CCeEEEEECC-CCCCCCHHH----HHHHHHHHHHcCCEEEEECCcc-ccccCCh-----hhcCCcEEEecCcccccCCC-
Confidence 4568888987 666676544 9999999999999999999983 3333332 23356887 67899986 3
Q ss_pred CcceE-EEec-hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 696 IPLAA-TLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 696 ~PlsA-vl~s-~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
-.+++ ++++ +.+.+.+..- .......-+|..|+.++..|+.+.. ..++..+++..+.+ .+++
T Consensus 285 dv~gG~v~~~~~~l~~~~~~~------~~~~g~~l~p~~A~l~lr~L~tL~~--R~~r~~~nA~~la~--------~L~~ 348 (464)
T PLN02509 285 DVMAGVLAVKGEKLAKEVYFL------QNSEGSGLAPFDCWLCLRGIKTMAL--RIEKQQENARKIAM--------YLSS 348 (464)
T ss_pred ccceeEEEeccHHHHHHHHHH------HHhcCCCcCHHHHHHHHhhhhhHHH--HHHHHHHHHHHHHH--------HHhc
Confidence 23444 4443 3333332110 0111122478899999998888843 23444444444433 4456
Q ss_pred CCCcceE------------------EeeeeEEEEEE
Q 003472 774 HRTVQRV------------------VALGTLCAIEL 791 (817)
Q Consensus 774 ~p~V~~V------------------rG~Glm~gIel 791 (817)
||.|..| +|-|-|+.|++
T Consensus 349 ~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~ 384 (464)
T PLN02509 349 HPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFIT 384 (464)
T ss_pred CCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEe
Confidence 6655544 36688999998
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-06 Score=98.62 Aligned_cols=178 Identities=12% Similarity=0.142 Sum_probs=97.1
Q ss_pred EEEEEEc-cccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc-cchhhhcCCCCcee--ecccccC-CC
Q 003472 620 IGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIA--CYGKLLT-GG 694 (817)
Q Consensus 620 iAAvIvE-PV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~-~~a~e~~gv~PDiv--tlgK~Lg-gG 694 (817)
+.++++. | +.-.|.+. +.+-+++|.++|+++++++|+||+...|--.+. ......+....+++ +++|.+| .|
T Consensus 167 ~~~v~i~~p--~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G 243 (391)
T PRK08361 167 TRMIVINYP--NNPTGATL-DKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTG 243 (391)
T ss_pred cEEEEEeCC--CCCCCcCc-CHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcH
Confidence 3444444 5 45567655 678889999999999999999999976521121 11111111123344 7899998 67
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+-+|.+++++++++.+... ....+++.+.+...++.++| ++.+..+.+.+..+.+.+ .++.+.+.+++.
T Consensus 244 -lRiG~~~~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~~ 312 (391)
T PRK08361 244 -WRLGFVIAPEQVIKDMIKL------HAYIIGNVASFVQIAGIEAL---RSKESWKAVEEMRKEYNE-RRKLVLKRLKEM 312 (391)
T ss_pred -hhhhhhccCHHHHHHHHHH------HhhhccCCChHHHHHHHHHh---cCCcccHHHHHHHHHHHH-HHHHHHHHHHhC
Confidence 6788899999888876421 11123444566555555554 332222222222222222 222344555555
Q ss_pred CCcceEEee-eeEEEEEEecCCCCCCcchHHHHHHHHHH-cCCC
Q 003472 775 RTVQRVVAL-GTLCAIELQAAGCNAGYCLIELFLYNFLT-TGMH 816 (817)
Q Consensus 775 p~V~~VrG~-Glm~gIel~~~~~~~~~~~~~~~~~~~l~-~Gv~ 816 (817)
+.+.-..-. |+++-+++...+ . ....+...+++ +||+
T Consensus 313 ~~~~~~~p~g~~~~~~~l~~~~----~-~~~~l~~~l~~~~gv~ 351 (391)
T PRK08361 313 PHIKVFEPKGAFYVFANIDETG----M-SSEDFAEWLLEKARVV 351 (391)
T ss_pred CCCeecCCCEEEEEEEECCCCC----C-CHHHHHHHHHHhCCEE
Confidence 544322333 566667775321 1 22345555554 5763
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.6e-06 Score=93.81 Aligned_cols=307 Identities=11% Similarity=-0.013 Sum_probs=159.0
Q ss_pred eeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCC-cc-eEEEeCChHHHHHHHH
Q 003472 401 QFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGW-AS-RAYFSDNGSTAIEIAL 478 (817)
Q Consensus 401 ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~-~~-~v~f~~SGseA~E~Al 478 (817)
.+||.+|.. .++- .|++.+++++.......+..+.+..+....+++.+....+-+. .+ .+++++++++|...++
T Consensus 2 ~~~~~~g~p--~~~~--~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~ 77 (350)
T TIGR03537 2 LFDFGTGDP--KEPT--PPFIRKALIDAVPEVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFP 77 (350)
T ss_pred eEeccCCCC--CCCC--CHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHH
Confidence 567766543 2332 5788999888765432222122233555566666654433110 23 7899999999887776
Q ss_pred HHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCc
Q 003472 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (817)
Q Consensus 479 klA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (817)
... .+ .| .+...|+.-+-+|.+....+. ..|..
T Consensus 78 ~~~----~~-~g-------------~~~d~Vl~~~p~y~~~~~~~~-~~g~~---------------------------- 110 (350)
T TIGR03537 78 LVF----ID-PE-------------EDRRRVIFGTPGYPVYERGAL-FAGGE---------------------------- 110 (350)
T ss_pred HHH----cC-CC-------------CCCceEEEcCCCCcchHHHHH-hcCCE----------------------------
Confidence 544 11 11 011367777777776432221 11110
Q ss_pred ceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003472 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (817)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~p 638 (817)
.+++|.... +. +. -| .+.+++.+.+ ++.++++.+- ..-.|.+.
T Consensus 111 --~~~v~~~~~-----------~~----~~--~d--------~~~l~~~~~~--------~~~~i~i~~p-~NPtG~~~- 153 (350)
T TIGR03537 111 --PTAVKLKKE-----------DG----FL--LR--------LEKVEKSILE--------ETKIVWINYP-HNPTGATA- 153 (350)
T ss_pred --EEEcccCcc-----------cC----Cc--cC--------HHHHHHhhhh--------ccEEEEEeCC-CCCcCccc-
Confidence 111110000 00 00 00 1445555542 2334444432 45566554
Q ss_pred CHHHHHHHHHHHhhcCCcEEEeeeeeccccccc-cchhhhcCCCCcee--ecccccC-CCCCcceEEEechHHHhhhcCC
Q 003472 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIA--CYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (817)
Q Consensus 639 p~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~-~~a~e~~gv~PDiv--tlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~ 714 (817)
+.+-+++|.++|++||+++|+||++.-+ ..+. ......++....|+ +++|.+| .| +=+|.+++++++.+.+...
T Consensus 154 ~~~~~~~l~~~a~~~~~~ii~De~y~~~-~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G-lRiG~~~~~~~~~~~~~~~ 231 (350)
T TIGR03537 154 PRSYLKETIAMCREHGIILCSDECYTEI-YFGEPPHSALEVGIENVLAFHSLSKRSGMTG-YRSGFVAGDEKLISFLRKL 231 (350)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecccccc-ccCCCCCchhhcCcCCEEEEeecccccCCcc-ccceeeecCHHHHHHHHHH
Confidence 7888999999999999999999998543 2232 11111122111233 6799986 46 6778888999888877531
Q ss_pred CccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecC
Q 003472 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (817)
Q Consensus 715 ~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~ 794 (817)
....+.+.++++.+++.+.+. .++..++.++.-+... +.+.+.++++........-|+++-+++.+.
T Consensus 232 ------~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~r~~l~~~~----~~~~~~l~~~g~~~~~~~g~~~~~~~~~~~ 298 (350)
T TIGR03537 232 ------RANFGVASPDFVQAAAKAAWS---DDNHVLERRKIFKRKR----DLFIEFFNKVGLEYLYPDATFYLWVKVPSG 298 (350)
T ss_pred ------HHhhccCCCHHHHHHHHHHhC---CcHHHHHHHHHHHHHH----HHHHHHHHHCCCcccCCCeEEEEEEECCCC
Confidence 112233445566666655543 2222222222222222 234444444432111112366677777543
Q ss_pred CCCCCcchHHHHHHHHHHcCCC
Q 003472 795 GCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 795 ~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.....+...+.++||+
T Consensus 299 ------~~~~~l~~~L~~~gv~ 314 (350)
T TIGR03537 299 ------IDAKDYALRLLENGIV 314 (350)
T ss_pred ------CCHHHHHHHHHHCCEE
Confidence 2345677888888874
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.3e-07 Score=103.79 Aligned_cols=235 Identities=12% Similarity=0.101 Sum_probs=140.8
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
+.++...+|+++|+++.+. +.+++++||.+|+..++.... +. ...|+..+.+|+|.
T Consensus 49 ~~~pt~~~L~~~lA~l~g~---~~~i~~~sg~~Ai~~~l~~l~-----~~----------------GD~Vl~~~~~y~~~ 104 (386)
T PRK08045 49 RGNPTRDVVQRALAELEGG---AGAVLTNTGMSAIHLVTTVFL-----KP----------------GDLLVAPHDCYGGS 104 (386)
T ss_pred CCCccHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHHc-----CC----------------CCEEEEcCCCcHHH
Confidence 4567788999999998873 579999999999998887541 11 13677777777653
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
......+... .+ ..+ .+.+. .|
T Consensus 105 ~~~~~~~~~~--------------~g--------------i~v----------------~~vd~-------~d------- 126 (386)
T PRK08045 105 YRLFDSLAKR--------------GC--------------YRV----------------LFVDQ-------GD------- 126 (386)
T ss_pred HHHHHHHHhh--------------CC--------------eEE----------------EEeCC-------CC-------
Confidence 2111111100 00 000 00000 00
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.+. .+..+|++|.. ..-.|.+.+ +++|.++|+++|+++|+||++... -. .....
T Consensus 127 -~e~l~~~l~--------~~tklV~l~sP-~NPtG~v~d----i~~I~~ia~~~g~~vivDeay~~~-~~-----~~pl~ 186 (386)
T PRK08045 127 -EQALRAALA--------EKPKLVLVESP-SNPLLRVVD----IAKICHLAREAGAVSVVDNTFLSP-AL-----QNPLA 186 (386)
T ss_pred -HHHHHHhcc--------cCCeEEEEECC-CCCCCEecC----HHHHHHHHHHcCCEEEEECCCCcc-cc-----CCchh
Confidence 134555553 24567888875 565677765 899999999999999999998532 11 11222
Q ss_pred CCCcee--ecccccCC--CCCcceEEEe-chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHH
Q 003472 680 CVPDIA--CYGKLLTG--GVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (817)
Q Consensus 680 v~PDiv--tlgK~Lgg--Gy~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~ 754 (817)
.-.|++ .+.|-++| + +-.|++++ ++++.+.+... ....+...+|..+..++..|+-+.. ..++..+
T Consensus 187 ~gaDivv~S~tK~l~G~~d-~~~G~vi~~~~~~~~~l~~~------~~~~g~~~~p~~~~l~~rgl~tl~~--R~~~~~~ 257 (386)
T PRK08045 187 LGADLVLHSCTKYLNGHSD-VVAGVVIAKDPDVVTELAWW------ANNIGVTGGAFDSYLLLRGLRTLVP--RMELAQR 257 (386)
T ss_pred hCCCEEEeecceeccCCCC-ceeEEEEeCcHHHHHHHHHH------HHhcCCCCCHHHHHHHHhhhccHHH--HHHHHHH
Confidence 345877 57999975 3 34566655 46665554211 1122344788888877777766532 1244445
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcceE------------------EeeeeEEEEEEec
Q 003472 755 ERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (817)
Q Consensus 755 ~~~~lg~~l~~~l~~~l~~~p~V~~V------------------rG~Glm~gIel~~ 793 (817)
++..+.+ .+++||.|..| .|.|.|+.|++..
T Consensus 258 na~~la~--------~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~ 306 (386)
T PRK08045 258 NAQAIVK--------YLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG 306 (386)
T ss_pred HHHHHHH--------HHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecC
Confidence 5544444 44556655544 4789999999964
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.6e-07 Score=102.67 Aligned_cols=231 Identities=13% Similarity=0.126 Sum_probs=138.8
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.+ .+.++.++||.+|+..++.+. +. + ..||.....|+|.
T Consensus 51 ~~~p~~~~le~~lA~leg---~~~~v~~~sG~aAi~~~l~~l------~~---------------G-D~VI~~~~~yg~~ 105 (364)
T PRK07269 51 TKNPTRAKLEETLAAIES---ADYALATSSGMSAIVLAFSVF------PV---------------G-SKVVAVRDLYGGS 105 (364)
T ss_pred CCCccHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHh------CC---------------C-CEEEEecCCcCch
Confidence 346778899999999987 368999999999999998533 11 1 2577766666543
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
... +.... + .+.+.+ +|.. |
T Consensus 106 ~~~-~~~~~----------------------~-----~~~~~~----------------~~~~---------d------- 125 (364)
T PRK07269 106 FRW-FNQQE----------------------K-----EGRFHF----------------TYAN---------T------- 125 (364)
T ss_pred HHH-HHHHH----------------------h-----cCcEEE----------------EecC---------C-------
Confidence 210 00000 0 000000 0110 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.+. .+..+|++|-. ..-.|.+.. +++|.++|+++|+++|+||++.. +.. +...+
T Consensus 126 -~~~l~~~i~--------~~TklV~lesP-~NPtg~~~d----i~~I~~la~~~gi~vvvD~t~~~----~~~--~~pl~ 185 (364)
T PRK07269 126 -EEELIAAIE--------EDTDIVYIETP-TNPLMVEFD----IEKVAKLAHAKGAKVIVDNTFYS----PIY--QRPIE 185 (364)
T ss_pred -HHHHHHhcC--------cCceEEEEECC-CCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcc----ccc--CCchh
Confidence 144555554 23457888875 344465554 99999999999999999999621 111 23344
Q ss_pred CCCceeec--ccccCC-CCCcceEEEe-chHHHhhhcCCCccceeec-ccCCCCCHHHHHHHHHHHHHhcCcCchhcHHH
Q 003472 680 CVPDIACY--GKLLTG-GVIPLAATLA-TNAVFDSFVGDSKLKALLH-GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (817)
Q Consensus 680 v~PDivtl--gK~Lgg-Gy~PlsAvl~-s~~i~d~~~~~~~~~~~~h-~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~ 754 (817)
.-.|++++ .|-++| |=+-.|++++ ++++++.+.. .+ ......+|..|+.++..|+.+.. ..++-.+
T Consensus 186 ~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~-------~~~~~G~~~s~~~a~l~~~~L~tL~~--r~~~~~~ 256 (364)
T PRK07269 186 LGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFY-------NLNTTGAVLSPFDSYLLMRGLKTLSL--RMERSTA 256 (364)
T ss_pred hCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHH-------HHHHhCCCCCHHHHHHHHcCCCcHHH--HHHHHHH
Confidence 56788854 688875 2111234555 4666665531 11 11245689999988888776632 1122222
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcceEE--eeeeEEEEEEe
Q 003472 755 ERRILRELWDLELIQQISSHRTVQRVV--ALGTLCAIELQ 792 (817)
Q Consensus 755 ~~~~lg~~l~~~l~~~l~~~p~V~~Vr--G~Glm~gIel~ 792 (817)
++.. +.+.+++||.|..|. |.|.|++|++.
T Consensus 257 na~~--------~a~~L~~~p~v~~v~ypg~gg~~sf~~~ 288 (364)
T PRK07269 257 NAQE--------VVAFLKKSPAVKEVLYTGKGGMISFKVA 288 (364)
T ss_pred HHHH--------HHHHHHhCCCccEEeCCCcCcEEEEEEC
Confidence 2222 445567899887775 88999999995
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-06 Score=98.00 Aligned_cols=287 Identities=15% Similarity=0.088 Sum_probs=153.4
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhcc-ccCCCCCCChHHHHHHHHHHhhcCCCC-c-ceEEEeCChHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGSTAIEI 476 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~~-~-~~v~f~~SGseA~E~ 476 (817)
.++|+..|.. .++ . +|.+.+++.+.++... .+....+..+...++++.+.+..+... - +.+.++++|++|+..
T Consensus 31 ~~i~l~~g~~--~~~-~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~ 106 (386)
T PRK09082 31 GAINLSQGFP--DFD-G-PPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFA 106 (386)
T ss_pred CEEEecCCCC--CCC-C-CHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHH
Confidence 4567666532 222 3 6888998888765421 111122344566778888877655211 1 258889999999999
Q ss_pred HHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCccccc
Q 003472 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (817)
Q Consensus 477 AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (817)
+++... .. ...|+..+-+|-+ ...++...|..
T Consensus 107 ~~~~~~-----~~----------------gd~Vli~~p~y~~-~~~~~~~~g~~-------------------------- 138 (386)
T PRK09082 107 AILALV-----RP----------------GDEVIVFDPSYDS-YAPAIELAGGR-------------------------- 138 (386)
T ss_pred HHHHHc-----CC----------------CCEEEEeCCCchh-hHHHHHHcCCE--------------------------
Confidence 887651 11 1256655554443 22222222111
Q ss_pred CcceeecCC-chhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003472 557 NSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (817)
Q Consensus 557 ~~~~~v~~P-~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~ 635 (817)
+..++.. .. |. + | .+.+++.+. .++.+|++... +.--|.
T Consensus 139 --~~~~~~~~~~------------~~-~--------d--------~~~l~~~~~--------~~~~~v~l~~p-~NPtG~ 178 (386)
T PRK09082 139 --AVRVALQPPD------------FR-V--------D--------WQRFAAAIS--------PRTRLIILNTP-HNPSGT 178 (386)
T ss_pred --EEEEecCccc------------cc-C--------C--------HHHHHHhcC--------ccceEEEEeCC-CCCCCc
Confidence 0111110 00 00 0 0 134555543 13445666443 455566
Q ss_pred ccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc--cchhhhcCCCCcee---ecccccC-CCCCcceEEEechHHHh
Q 003472 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFD 709 (817)
Q Consensus 636 ~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~--~~a~e~~gv~PDiv---tlgK~Lg-gGy~PlsAvl~s~~i~d 709 (817)
.. +++-+++|.++|++||+++|+||+...+--.+. ....+..++.+.++ +|||.+| .| +-+|.+++.+++++
T Consensus 179 ~~-~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~iv~~~~l~~ 256 (386)
T PRK09082 179 VW-SAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTG-WKVGYCVAPAALSA 256 (386)
T ss_pred CC-CHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchh-hhhhhhhCCHHHHH
Confidence 55 678899999999999999999999864421122 11122223322232 7899997 57 78888999999988
Q ss_pred hhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC-cceEEeeeeEEE
Q 003472 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT-VQRVVALGTLCA 788 (817)
Q Consensus 710 ~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~-V~~VrG~Glm~g 788 (817)
.+... .....++.++++..++.+.|+. .++..+++.+.-+...+. +.+.++++.+ +... .-|+++-
T Consensus 257 ~~~~~------~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~----~~~~L~~~~~~~~~~-~g~~~~~ 323 (386)
T PRK09082 257 EFRKV------HQYNTFTVNTPAQLALADYLRA--EPEHYLELPAFYQAKRDR----FRAALANSRFKLLPC-EGTYFQL 323 (386)
T ss_pred HHHHH------HhhhcCCCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHH----HHHHHHhCCCcccCC-CeeEEEE
Confidence 87532 1224456677766665555432 222223332222222232 3334444332 1122 3366777
Q ss_pred EEEec
Q 003472 789 IELQA 793 (817)
Q Consensus 789 Iel~~ 793 (817)
+++.+
T Consensus 324 ~~~~~ 328 (386)
T PRK09082 324 VDYSA 328 (386)
T ss_pred Eeccc
Confidence 78753
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.5e-07 Score=105.22 Aligned_cols=147 Identities=15% Similarity=0.132 Sum_probs=92.9
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC-CC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg-Gy 695 (817)
+..+|++|-. ....|.+.+ +++|.++|+++|+++|+||++. .+-.... .....|++ .++|.++| |
T Consensus 150 ~tklV~lesp-~NptG~v~d----l~~I~~la~~~gi~lvvD~a~a-~~~~~~~-----~~~gaDivv~S~sK~l~g~g- 217 (398)
T PRK07504 150 NTKVFFLESP-TNPTLEVID----IAAVAKIANQAGAKLVVDNVFA-TPLFQKP-----LELGAHIVVYSATKHIDGQG- 217 (398)
T ss_pred CceEEEEECC-CCCCcEecC----HHHHHHHHHHcCCEEEEECCcc-ccccCCc-----hhhCCCEEEeeccccccCCc-
Confidence 4568888886 666677776 9999999999999999999995 2112211 12246877 55899976 5
Q ss_pred Ccce-EEEechHHHhh-hcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 696 IPLA-ATLATNAVFDS-FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 696 ~Pls-Avl~s~~i~d~-~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
..+| +++++++.++. +.. +.......-+|..++.++..|+.+.. ..++..+++..+.+ .+++
T Consensus 218 ~~~GG~vv~~~~~i~~~~~~------~~~~~g~~~s~~~A~~~l~~L~tl~~--R~~~~~~na~~la~--------~L~~ 281 (398)
T PRK07504 218 RCLGGVVLSDKAWIEEHLQD------YFRHTGPSLSPFNAWTLLKGLETLPV--RVRQQTESAAAIAD--------FLAG 281 (398)
T ss_pred cceEEEEEeCcHHHHHHHHH------HHHHhCCCCCHHHHHHHHhccchHHH--HHHHHHHHHHHHHH--------HHHc
Confidence 5665 55566665432 211 01112234688999999988888743 22333444444443 3344
Q ss_pred CCCcc------------------eEEeeeeEEEEEEec
Q 003472 774 HRTVQ------------------RVVALGTLCAIELQA 793 (817)
Q Consensus 774 ~p~V~------------------~VrG~Glm~gIel~~ 793 (817)
+|.|. .-+|-|-|+.|++..
T Consensus 282 ~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 319 (398)
T PRK07504 282 HPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKG 319 (398)
T ss_pred CCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCC
Confidence 44433 224678899999963
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.5e-07 Score=104.03 Aligned_cols=241 Identities=12% Similarity=0.080 Sum_probs=138.8
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
+.++...+|+++|+++.+. +.+++++||++|+..++.... . + ...||+.+-.|.|.
T Consensus 80 ~~~Pt~~~Le~~lA~leg~---~~~iv~~sG~~Ai~~~l~al~-----~---------------~-Gd~Vv~~~p~Y~~~ 135 (427)
T PRK07049 80 FNHPNSEIVEDRLAVYEGA---ESAALFSSGMSAIATTLLAFV-----R---------------P-GDVILHSQPLYGGT 135 (427)
T ss_pred CCCcCHHHHHHHHHHHhCC---CcEEEEccHHHHHHHHHHHHh-----C---------------C-CCEEEEcCCCcccH
Confidence 4466678999999998873 579999999999888887652 1 1 13577777777763
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
......... .. ++..+.+++. .|.
T Consensus 136 ~~~~~~~l~--------------~~-------------Gi~~v~~~~~-------------~d~---------------- 159 (427)
T PRK07049 136 ETLLAKTFR--------------NF-------------GVGAVGFADG-------------LSE---------------- 159 (427)
T ss_pred HHHHHHHHH--------------hc-------------CcEEEEEeCC-------------CCH----------------
Confidence 211100000 00 0000111100 110
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhh------cCCcEEEeeeeeccccccccc
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN------RKIPVIFDEVFTGFWRLGVET 673 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~------~GilLI~DEV~TGfGRtG~~~ 673 (817)
+.+++.+++. ....++.+|++|.. ..-.|.+.+ ++++.++|++ +|+++|+||+..++-..
T Consensus 160 --~~l~~~l~~~---~~~~~tklv~lesP-~NPtg~v~d----~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~---- 225 (427)
T PRK07049 160 --AAIGAAAEAA---AAKGRVSLILIETP-ANPTNSLVD----VAAVRRVADAIEARQGHRPIIACDNTLLGPVFQ---- 225 (427)
T ss_pred --HHHHHHHHhh---ccCCCceEEEEECC-CCCCCcccC----HHHHHHHHHHhhhcccCCCEEEEECCccccccC----
Confidence 2334444321 11235778999986 666777764 4455555544 89999999996443111
Q ss_pred hhhhcCCCCcee--ecccccCC--CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCch
Q 003472 674 TADLLGCVPDIA--CYGKLLTG--GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTN 749 (817)
Q Consensus 674 a~e~~gv~PDiv--tlgK~Lgg--Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~ 749 (817)
.-.....||+ +++|.+|| | +=+|.+++++++++.+... .......-+|..+.+++..|+.+.. ..
T Consensus 226 --~pl~~g~divv~S~SK~~gG~~g-lr~G~vv~~~~l~~~l~~~------~~~~g~~ls~~~a~l~~r~L~tl~~--R~ 294 (427)
T PRK07049 226 --KPLEHGADLSVYSLTKYVGGHSD-LVAGAVLGRKALIRQVRAL------RSAIGTQLDPHSCWMLGRSLETLVL--RM 294 (427)
T ss_pred --CccccCCCEEEEcCceeecCCCC-cEEEEEECCHHHHHHHHHH------HHhcCCCCCHHHHHHHHcCCChHHH--HH
Confidence 1111235776 88999994 6 6788888899888877421 1112334678888877777655422 11
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHcCCCcceEE--------------------eeeeEEEEEEec
Q 003472 750 HNIIPERRILRELWDLELIQQISSHRTVQRVV--------------------ALGTLCAIELQA 793 (817)
Q Consensus 750 ~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~Vr--------------------G~Glm~gIel~~ 793 (817)
++..+++.. +.+.++++|.|..|. |.|.|+.|+|..
T Consensus 295 ~~~~~~a~~--------la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~ 350 (427)
T PRK07049 295 ERANRNARA--------VAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKG 350 (427)
T ss_pred HHHHHHHHH--------HHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcC
Confidence 222333333 344455566554443 568899999964
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.1e-07 Score=103.71 Aligned_cols=74 Identities=19% Similarity=0.163 Sum_probs=53.0
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC-CC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg-Gy 695 (817)
+..+|++|.+ ....|.+.+ +++|.++|+++|+++|+|++|. .+... .......|++ .+.|.+|| |
T Consensus 155 ~tklV~ie~~-sNp~G~v~D----l~~I~~la~~~gi~liVD~t~a-~~~~~-----~pl~~GaDivv~S~tK~lgg~G- 222 (436)
T PRK07812 155 NTKAFFAETI-SNPQIDVLD----IPGVAEVAHEAGVPLIVDNTIA-TPYLI-----RPLEHGADIVVHSATKYLGGHG- 222 (436)
T ss_pred CCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-ccccC-----CchhcCCCEEEEecccccCCCC-
Confidence 4678999997 777788888 9999999999999999999984 22221 1122347876 67899986 4
Q ss_pred CcceEEEec
Q 003472 696 IPLAATLAT 704 (817)
Q Consensus 696 ~PlsAvl~s 704 (817)
--++++++.
T Consensus 223 ~~i~G~vv~ 231 (436)
T PRK07812 223 TAIAGVIVD 231 (436)
T ss_pred CeEEEEEEc
Confidence 234444443
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-06 Score=97.64 Aligned_cols=71 Identities=14% Similarity=0.096 Sum_probs=52.7
Q ss_pred ceeeccccccccCCCCCC-CHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATL-QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~-hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Al 478 (817)
.+|..++-+ .+||-+. .++|++|+++.++.+. ...+...+++++++++++. +.++++++|++|+..|+
T Consensus 9 ~~ina~g~~--t~~g~s~~~~~v~~a~~~~~~~~~------~~~~~~~~~~~~~a~~~g~---~~~~~~~g~t~al~~al 77 (363)
T TIGR01437 9 KVINASGKM--TILGVSTVSDEVADAQKRGAQNYF------EIKELVNKTGEYIANLLGV---EDAVIVSSASAGIAQSV 77 (363)
T ss_pred eEEECCcEe--ecCCCCCCCHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHhhCC---CeEEEEcCHHHHHHHHH
Confidence 444444433 3455432 7999999999876542 2356778899999999883 57899999999999999
Q ss_pred HHH
Q 003472 479 KMA 481 (817)
Q Consensus 479 klA 481 (817)
+.+
T Consensus 78 ~al 80 (363)
T TIGR01437 78 AAV 80 (363)
T ss_pred HHH
Confidence 877
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-07 Score=104.71 Aligned_cols=147 Identities=12% Similarity=0.113 Sum_probs=90.4
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC-CCCc
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GVIP 697 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg-Gy~P 697 (817)
.+|++|-. .+..+ +..-+++|.++|+++|+++|+|+++... -.... . .+| .|++ ++.|.++| |-.-
T Consensus 149 klV~ie~p-t~~~~----~~~dl~~i~~la~~~gi~vivD~a~a~~-~~~~p--~-~~g--~Divv~S~tK~l~g~~~~~ 217 (389)
T PRK05968 149 KLLYLESP-TSWVF----ELQDVAALAALAKRHGVVTMIDNSWASP-VFQRP--I-TLG--VDLVIHSASKYLGGHSDTV 217 (389)
T ss_pred CEEEEECC-CCCCC----cHHHHHHHHHHHHHcCCEEEEECCCcch-hccCc--h-hcC--CcEEEeeccccccCCCCeE
Confidence 46777865 44433 4456999999999999999999998422 22221 1 123 4776 67899986 3112
Q ss_pred ceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 003472 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (817)
Q Consensus 698 lsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V 777 (817)
.|.+++++++++.+.... .+ ..+ ...+|..++.++..|+.+. .++.++.+. .+ .+.+.++++|.|
T Consensus 218 gG~i~~~~~~~~~l~~~~--~~-~~g--~~~~~~~A~~~l~~L~tl~-----~r~~~~~~~-a~----~la~~L~~~p~v 282 (389)
T PRK05968 218 AGVVAGSKEHIARINAEA--YP-YLG--AKLSPFEAWLLLRGLRTLP-----LRMKAHEAS-AL----EIARRLKAHPVV 282 (389)
T ss_pred EEEEEECHHHHHHHHHHH--HH-hCC--CCCChHHHHHHHcccCcHH-----HHHHHHHHH-HH----HHHHHHHhCCCc
Confidence 455667888777654210 00 112 3356888887777666552 244333332 22 244556677877
Q ss_pred ceEE-------------eeeeEEEEEEec
Q 003472 778 QRVV-------------ALGTLCAIELQA 793 (817)
Q Consensus 778 ~~Vr-------------G~Glm~gIel~~ 793 (817)
..|. |.|.|+.|++..
T Consensus 283 ~~v~~p~l~~~~~~~~~g~g~~~sf~~~~ 311 (389)
T PRK05968 283 ERVCHPALANHPPAGLSGTSGLFSFIFRE 311 (389)
T ss_pred cEEECCCCCCChHHhCCCCceEEEEEECC
Confidence 7665 778899999973
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.1e-06 Score=96.79 Aligned_cols=305 Identities=10% Similarity=0.045 Sum_probs=163.2
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhc-cccCCCCCCChHHHHHHHHHHhhcCCCC-cc-eEEEeCChHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKGW-AS-RAYFSDNGSTAIEI 476 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~~~~~-~~-~v~f~~SGseA~E~ 476 (817)
..||+..|.- ++...+.+.+++.+.+++. ..+....+..+....+++.+.+..+-.. -+ .+++++++++|+..
T Consensus 55 ~~i~l~~G~P----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~ 130 (413)
T PLN00175 55 GAINLGQGFP----NFDGPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAA 130 (413)
T ss_pred CeEecCCCCC----CCCCCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHH
Confidence 4566655433 2222678888988887752 1121122334555667777765433210 12 58888889999888
Q ss_pred HHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCccccc
Q 003472 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (817)
Q Consensus 477 AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (817)
++.... .. ...|+..+-+|.+.. ..+...|..
T Consensus 131 ~~~~l~-----~~----------------gd~Vlv~~P~y~~~~-~~~~~~g~~-------------------------- 162 (413)
T PLN00175 131 TILGLI-----NP----------------GDEVILFAPFYDSYE-ATLSMAGAK-------------------------- 162 (413)
T ss_pred HHHHhC-----CC----------------CCEEEEeCCCchhHH-HHHHHcCCE--------------------------
Confidence 777541 11 135777766665422 222221111
Q ss_pred CcceeecCC-chhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003472 557 NSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (817)
Q Consensus 557 ~~~~~v~~P-~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~ 635 (817)
+..++.. ..+ . + + .+.|++.+. .++.+|++... +.-.|.
T Consensus 163 --~~~v~~~~~~~------------~-~--------~--------~~~l~~~~~--------~~~k~i~i~~p-~NPtG~ 202 (413)
T PLN00175 163 --IKTVTLRPPDF------------A-V--------P--------EDELKAAFT--------SKTRAILINTP-HNPTGK 202 (413)
T ss_pred --EEEEECCcccC------------C-C--------C--------HHHHHHhcC--------cCceEEEecCC-CCCCCc
Confidence 0011110 000 0 0 0 244555553 13455666543 555676
Q ss_pred ccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc-hhhhcCCCCc-ee--ecccccC-CCCCcceEEEechHHHhh
Q 003472 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD-IA--CYGKLLT-GGVIPLAATLATNAVFDS 710 (817)
Q Consensus 636 ~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~-a~e~~gv~PD-iv--tlgK~Lg-gGy~PlsAvl~s~~i~d~ 710 (817)
+. +.+.+++|.++|++||+++|.||+...+---+... ..+..+..+. |+ +|||.++ .| +-+|.+++++++++.
T Consensus 203 ~~-s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G-~RiG~~v~~~~l~~~ 280 (413)
T PLN00175 203 MF-TREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTG-WKIGWAIAPPHLTWG 280 (413)
T ss_pred CC-CHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcc-hheeeeEeCHHHHHH
Confidence 65 78899999999999999999999997662222211 1122222222 33 7899998 68 789999999999887
Q ss_pred hcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEee-eeEEEE
Q 003472 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAI 789 (817)
Q Consensus 711 ~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~-Glm~gI 789 (817)
+... ....+++.+++.-.++.++|+-- +...+++.+.-+...+ .+.+.+++++. .-.... |.++-+
T Consensus 281 l~~~------~~~~~~~~s~~~Q~a~~~~l~~~--~~~~~~~~~~~~~~~~----~l~~~L~~~g~-~~~~p~g~~f~~~ 347 (413)
T PLN00175 281 VRQA------HSFLTFATATPMQWAAVAALRAP--ESYYEELKRDYSAKKD----ILVEGLKEVGF-KVYPSSGTYFVMV 347 (413)
T ss_pred HHHH------HhhccCCCCHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHH----HHHHHHHHCCC-eecCCCeeEEEEE
Confidence 7431 11235677777777776666421 1122222222222222 23344444432 112222 455666
Q ss_pred EEecCCCCCCcchHHHHHHHHHH-cCC
Q 003472 790 ELQAAGCNAGYCLIELFLYNFLT-TGM 815 (817)
Q Consensus 790 el~~~~~~~~~~~~~~~~~~~l~-~Gv 815 (817)
.+...+ ......|...+++ +||
T Consensus 348 ~~~~~~----~~~~~~~~~~ll~~~gV 370 (413)
T PLN00175 348 DHTPFG----FENDIAFCEYLIEEVGV 370 (413)
T ss_pred eccccC----CCCHHHHHHHHHHhCCE
Confidence 653221 1234567777764 576
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=98.70 E-value=5e-06 Score=94.22 Aligned_cols=173 Identities=9% Similarity=0.023 Sum_probs=100.4
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceee--cccccCCCCC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVI 696 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgK~LggGy~ 696 (817)
++.+|++.-+ +...|.+.+ +++|.++|+++|+++|+|++|. +|..- .-.+ ...+|+++ +.|.+|. .
T Consensus 159 ~~~lv~~~~~-~~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~g~~~--~~~~--~~~~d~~~~s~~K~~gp--~ 226 (403)
T TIGR01979 159 KTKLVAITHV-SNVLGTVNP----VEEIAKLAHQVGAKVLVDGAQA-VPHMP--VDVQ--ALDCDFYVFSGHKMYGP--T 226 (403)
T ss_pred CCeEEEEEcc-cccccccCC----HHHHHHHHHHcCCEEEEEchhh-cCccc--cCcc--ccCCCEEEEecccccCC--C
Confidence 3556666655 677788887 8999999999999999999994 43211 1111 23578875 4697652 2
Q ss_pred cceEEEechHHHhhhcCCC----ccceeec-ccC-------C---CCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHH
Q 003472 697 PLAATLATNAVFDSFVGDS----KLKALLH-GHS-------Y---SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRE 761 (817)
Q Consensus 697 PlsAvl~s~~i~d~~~~~~----~~~~~~h-~~T-------~---~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~ 761 (817)
-+|.+.+++++.+.+.... ....+.. ..+ | +.+..+.+++.++++.+.+.+. +++.++...+.+
T Consensus 227 G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~-~~~~~~~~~l~~ 305 (403)
T TIGR01979 227 GIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGL-ENIEAHEHELTA 305 (403)
T ss_pred CceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHH
Confidence 3678889988877653100 0000000 000 1 2456677777888888865332 455666666666
Q ss_pred HHHHHHHHHHHcCCCc---ceE--EeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCC
Q 003472 762 LWDLELIQQISSHRTV---QRV--VALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGM 815 (817)
Q Consensus 762 ~l~~~l~~~l~~~p~V---~~V--rG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv 815 (817)
++.+.+ ++.+.+ ... .-++.++.+.+... ....+...+.++||
T Consensus 306 ~l~~~l----~~~~g~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~L~~~gI 353 (403)
T TIGR01979 306 YALERL----GEIPGLRIYGPRDAEDRGGIISFNVEGV-------HPHDVGTILDEEGI 353 (403)
T ss_pred HHHHHH----hcCCCEEEeCCCCccccCceEEEEeCCc-------CHHHHHHHHhhCCE
Confidence 555433 333322 111 12366777877432 12345556666676
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.3e-06 Score=95.25 Aligned_cols=315 Identities=13% Similarity=0.051 Sum_probs=170.0
Q ss_pred cccceeeccccccccCCCCCCCHHHHHHHHHHHHhccc--cCCCCCCChHHHHHHHHHHhhcCCCC-c-ceEEEeCChHH
Q 003472 397 FIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGST 472 (817)
Q Consensus 397 ~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~~~~~-~-~~v~f~~SGse 472 (817)
.....+|+..|.-+ .++ - .|.+.+++.+.+.+... +....+..+....+++.+.+..+... - +.+++++++++
T Consensus 37 ~~~~~i~l~~g~~~-~~~-p-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~ 113 (405)
T PRK06207 37 LPGRPVDFSHGDVD-AHE-P-TPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQG 113 (405)
T ss_pred CCCCceecCCcCCC-CCC-C-CHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHH
Confidence 33467777655332 222 3 57888888887765321 11122345566788888887655211 2 57999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCc
Q 003472 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (817)
Q Consensus 473 A~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (817)
|+..+++... .. ...|+...-+|.+.... ....|..
T Consensus 114 al~~~~~~l~-----~~----------------Gd~Vlv~~P~y~~~~~~-~~~~g~~---------------------- 149 (405)
T PRK06207 114 ALFLAVAATV-----AR----------------GDKVAIVQPDYFANRKL-VEFFEGE---------------------- 149 (405)
T ss_pred HHHHHHHHhc-----CC----------------CCEEEEeCCCchhHHHH-HHHcCCE----------------------
Confidence 9998888661 11 13678888888763321 1111111
Q ss_pred ccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003472 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (817)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~ 632 (817)
.++.|-. +.+.+..++ -| .+.|++.+++ ..-+.+++-| +.-
T Consensus 150 --------v~~v~~~------------~~~~~~~~~--~d--------~~~l~~~~~~-------~~k~v~l~~P--~NP 190 (405)
T PRK06207 150 --------MVPVQLD------------YLSADKRAG--LD--------LDQLEEAFKA-------GVRVFLFSNP--NNP 190 (405)
T ss_pred --------EEEEecc------------ccCcccCCC--cC--------HHHHHHhhhh-------cCeEEEECCC--CCC
Confidence 0011100 000000000 00 2445555542 1223456667 444
Q ss_pred CCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc-hhhhcCCCCc-ee---ecccccC-CCCCcceEEEechH
Q 003472 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD-IA---CYGKLLT-GGVIPLAATLATNA 706 (817)
Q Consensus 633 gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~-a~e~~gv~PD-iv---tlgK~Lg-gGy~PlsAvl~s~~ 706 (817)
-|.+. +.+-+++|.++|++||+++|.||+..-|--.|... ....+...+| ++ +|||.++ .| +-+|.++++++
T Consensus 191 TG~~~-s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpG-lRiG~ii~~~~ 268 (405)
T PRK06207 191 AGVVY-SAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSG-YRLGVAFGSPA 268 (405)
T ss_pred CCcCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcc-cceEEEEcCHH
Confidence 56655 78889999999999999999999997662223221 1111223344 22 7899998 78 78999999999
Q ss_pred HHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceE-Eeeee
Q 003472 707 VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-VALGT 785 (817)
Q Consensus 707 i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~V-rG~Gl 785 (817)
+++.+.... ...+.+.+.++.+++.+.|+- .++..++..+..+.. ++.+.+.+++++.+.-. ..-|+
T Consensus 269 l~~~~~~~~------~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~----r~~l~~~L~~~~~~~~~~p~gg~ 336 (405)
T PRK06207 269 IIDRMEKLQ------AIVSLRAAGYSQAVLRTWFSE--PDGWMKDRIARHQAI----RDDLLRVLRGVEGVFVRAPQAGS 336 (405)
T ss_pred HHHHHHHHH------hHhccCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHH----HHHHHHHHhcCCCceecCCCeeE
Confidence 988875321 112333445555555555431 112222222222222 22344455555433222 22377
Q ss_pred EEEEEEecCCCCCCcchHHHHHHHHH-HcCCC
Q 003472 786 LCAIELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 786 m~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv~ 816 (817)
++-+++.... .....+...++ ++||.
T Consensus 337 fl~~~l~~~~-----~~~~~~~~~l~~~~gV~ 363 (405)
T PRK06207 337 YLFPRLPRLA-----VSLHDFVKILRLQAGVI 363 (405)
T ss_pred EEEEeCcccC-----CCHHHHHHHHHHhcCEE
Confidence 8888875421 12345666666 56763
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.3e-07 Score=101.41 Aligned_cols=233 Identities=13% Similarity=0.078 Sum_probs=135.5
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
+.++...+|+++|+++.+. +..+.++||++|+..++.+. . + ..+||..+..|++.
T Consensus 49 ~~~pt~~~le~~la~l~g~---~~~~~~~sG~~ai~~~~~ll------~---------------~-Gd~Vl~~~~~y~~t 103 (366)
T PRK08247 49 TGNPTRGVLEQAIADLEGG---DQGFACSSGMAAIQLVMSLF------R---------------S-GDELIVSSDLYGGT 103 (366)
T ss_pred CCCchHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHh------C---------------C-CCEEEEecCCcCcH
Confidence 4567788999999999874 56789999999998776433 1 1 13688888888773
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
........ .. .|.- +..++ ..|
T Consensus 104 ~~~~~~~~--~~------------~G~~-----------v~~vd----------------~~d----------------- 125 (366)
T PRK08247 104 YRLFEEHW--KK------------WNVR-----------FVYVN----------------TAS----------------- 125 (366)
T ss_pred HHHHHHHh--hc------------cCce-----------EEEEC----------------CCC-----------------
Confidence 21110000 00 0000 00000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee-ccccccccchhhhc
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLL 678 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-GfGRtG~~~a~e~~ 678 (817)
.+.+++.+. .++.+|++|.. ..-- .+...+++|.++|+++|+++|+||++. ++ .+.. .
T Consensus 126 -~~~l~~~i~--------~~tklv~le~P-~NP~----~~~~dl~~I~~la~~~g~~lIvD~t~~~~~--~~~p-----~ 184 (366)
T PRK08247 126 -LKAIEQAIT--------PNTKAIFIETP-TNPL----MQETDIAAIAKIAKKHGLLLIVDNTFYTPV--LQRP-----L 184 (366)
T ss_pred -HHHHHHhcc--------cCceEEEEECC-CCCC----CcHHHHHHHHHHHHHcCCEEEEECCCcccc--ccCc-----h
Confidence 144555554 24568888775 3322 245669999999999999999999982 22 1111 1
Q ss_pred CCCCcee--ecccccCCC-CCcceEEEec-hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHH
Q 003472 679 GCVPDIA--CYGKLLTGG-VIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (817)
Q Consensus 679 gv~PDiv--tlgK~LggG-y~PlsAvl~s-~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~ 754 (817)
....|++ .++|.++|. =+-.|+++++ +++++.+... ....+...+|..+..++..|+.+.. ..++..+
T Consensus 185 ~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~------~~~~g~~~s~~~a~l~~~~l~tl~~--r~~~~~~ 256 (366)
T PRK08247 185 EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYY------QNAAGAVLSPFDSWLLIRGMKTLAL--RMRQHEE 256 (366)
T ss_pred hcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHH------HHhcCCCCChHHHHHHHhccCcHHH--HHHHHHH
Confidence 1235776 689999861 1234556665 5666655311 1122344578777777776654422 1112222
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcceE--EeeeeEEEEEEe
Q 003472 755 ERRILRELWDLELIQQISSHRTVQRV--VALGTLCAIELQ 792 (817)
Q Consensus 755 ~~~~lg~~l~~~l~~~l~~~p~V~~V--rG~Glm~gIel~ 792 (817)
++. .+.+.++++|.|..| -|.|.|+++++.
T Consensus 257 ~a~--------~l~~~L~~~p~v~~v~~P~~gg~~sf~~~ 288 (366)
T PRK08247 257 NAK--------AIAAFLNEQPGVTDVLYPGRGGMLSFRLQ 288 (366)
T ss_pred HHH--------HHHHHHHhCCCeeEEecCCcCcEEEEEEC
Confidence 222 244556778877664 446899999985
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.3e-06 Score=93.73 Aligned_cols=176 Identities=15% Similarity=0.109 Sum_probs=99.4
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc--hhhhcCCC-Ccee--ecccccC-CC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET--TADLLGCV-PDIA--CYGKLLT-GG 694 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~--a~e~~gv~-PDiv--tlgK~Lg-gG 694 (817)
+.+|.-| +.-.|.+. +.+-+++|.++|++||+++|+||++..+--.+..+ ..+..+.. .+++ +++|.+| .|
T Consensus 162 ~v~l~~p--~NPtG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 238 (387)
T PRK08912 162 AVLLNNP--LNPAGKVF-PREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTG 238 (387)
T ss_pred EEEEeCC--CCCcCccc-CHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcC
Confidence 3455556 45556555 67889999999999999999999986542122111 11222221 2333 7899999 78
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+-+|.+++++++++.+... ....+++.++...+++.+.|. ..++..+++.+..+...+.+ .+.++++
T Consensus 239 -lRiG~~~~~~~~~~~l~~~------~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~l----~~~L~~~ 305 (387)
T PRK08912 239 -WKVGFVCAAPPLLRVLAKA------HQFLTFTTPPNLQAAVAYGLG--KPDDYFEGMRADLARSRDRL----AAGLRRI 305 (387)
T ss_pred -ceeEEEecCHHHHHHHHHH------HhhccccCChHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 7899999999998887431 112345666666666655553 22223333444333333333 3344444
Q ss_pred CCcceEEe-eeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCCC
Q 003472 775 RTVQRVVA-LGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 775 p~V~~VrG-~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv~ 816 (817)
++ .-... -|.++.+++...+ .......+...++ ++||+
T Consensus 306 g~-~~~~~~g~~~l~~~l~~~~---~~~~~~~~~~~l~~~~gV~ 345 (387)
T PRK08912 306 GF-PVLPSQGTYFLTVDLAPLG---LAEDDVAFCRRLVEEAGVA 345 (387)
T ss_pred CC-cccCCCcceEEEecccccC---CCCCHHHHHHHHHhcCCEE
Confidence 32 11122 2566777775421 0123355666665 45763
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-06 Score=100.23 Aligned_cols=148 Identities=13% Similarity=0.133 Sum_probs=91.2
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC-CC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg-Gy 695 (817)
+..+|++|-. ..-.|.+.. +++|.++|+++|+++|+||++..-... .-.....|++ ...|.++| |-
T Consensus 145 ~tklV~l~~P-~NPtG~v~d----l~~I~~la~~~gi~vIvD~a~a~~~~~------~pl~~gaDivv~S~tK~l~g~~~ 213 (405)
T PRK08776 145 SPKLVLIETP-SNPLLRITD----LRFVIEAAHKVGALTVVDNTFLSPALQ------KPLEFGADLVLHSTTKYINGHSD 213 (405)
T ss_pred CCeEEEEECC-CCCCCccCC----HHHHHHHHHHcCCEEEEECCCcccccC------CcccccCCEEEecCceeecCCCC
Confidence 3556777764 455566654 899999999999999999999521111 1111235777 45798875 21
Q ss_pred CcceEEEe-chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 696 IPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 696 ~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+-.|++++ ++++.+.+... .....+..+|+.+.+++..++.++. ..+...+++..+.++ ++++
T Consensus 214 ~~~G~vv~~~~~l~~~l~~~------~~~~g~~~s~~~a~l~~~gl~tl~~--r~~~~~~na~~la~~--------L~~~ 277 (405)
T PRK08776 214 VVGGAVVARDAELHQQLVWW------ANALGLTGSPFDAFLTLRGLRTLDA--RLRVHQENADAIAAL--------LDGH 277 (405)
T ss_pred ceEEEEEeCCHHHHHHHHHH------HHhcCCCCCHHHHHHHHhhhCcHHH--HHHHHHHHHHHHHHH--------HHcC
Confidence 44566665 46666655321 1112234689999998877777633 334555555555443 3444
Q ss_pred CCcceE------------------EeeeeEEEEEEec
Q 003472 775 RTVQRV------------------VALGTLCAIELQA 793 (817)
Q Consensus 775 p~V~~V------------------rG~Glm~gIel~~ 793 (817)
|.|..| .|.|.|+.|+|..
T Consensus 278 p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 314 (405)
T PRK08776 278 AAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEG 314 (405)
T ss_pred CCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcC
Confidence 443322 4789999999964
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.3e-06 Score=92.25 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=90.2
Q ss_pred EEEE-EEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc-h-hhhcCCCCcee---ecccccCC
Q 003472 620 IGAL-IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-T-ADLLGCVPDIA---CYGKLLTG 693 (817)
Q Consensus 620 iAAv-IvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~-a-~e~~gv~PDiv---tlgK~Lgg 693 (817)
+.+| +.-| +.-.|.+. +.+-+++|.++|+++|+++|+||+..+|...|... . ....+..+.++ +++|.+|.
T Consensus 163 ~~~v~i~~p--~NPtG~~~-~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~ 239 (397)
T PRK07568 163 TKAILISNP--GNPTGVVY-TKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSA 239 (397)
T ss_pred ceEEEEECC--CCCCCccC-CHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccC
Confidence 3344 4566 34456544 67779999999999999999999998885445321 1 12222234444 78999984
Q ss_pred -CCCcceEEEec-hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHH
Q 003472 694 -GVIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQI 771 (817)
Q Consensus 694 -Gy~PlsAvl~s-~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l 771 (817)
| +.+|.+++. +++++.+... ...+++.++++..++.++|+.- ++..+++.+..+...+ .+.+.+
T Consensus 240 ~G-~R~G~~~~~~~~~~~~~~~~-------~~~~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~----~l~~~L 305 (397)
T PRK07568 240 CG-ARIGCLISKNKELIAAAMKL-------CQARLSPPTLEQIGAAALLDTP--ESYFDEVREEYKKRRD----ILYEEL 305 (397)
T ss_pred CC-cceEEEecCCHHHHHHHHHH-------hhccCCCCcHHHHHHHHHhhCC--HHHHHHHHHHHHHHHH----HHHHHH
Confidence 8 799999984 6787766321 1124556677666666665421 1122222222222222 244455
Q ss_pred HcCCCcceEEee-eeEEEEEEe
Q 003472 772 SSHRTVQRVVAL-GTLCAIELQ 792 (817)
Q Consensus 772 ~~~p~V~~VrG~-Glm~gIel~ 792 (817)
++++.+.-.... |+++-+++.
T Consensus 306 ~~~~~~~~~~p~g~~~~~~~l~ 327 (397)
T PRK07568 306 NKIPGVVCEKPKGAFYIIAKLP 327 (397)
T ss_pred hcCCCceecCCCcceEEEEecC
Confidence 555544323333 455556664
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.5e-06 Score=94.30 Aligned_cols=221 Identities=14% Similarity=0.105 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCC
Q 003472 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (817)
Q Consensus 419 P~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~ 498 (817)
++..+|+.+.+...... +..+...++++.+++..+ .+.+++++||++|...+++.+ . .
T Consensus 11 ~~e~~a~~~~~~~~~~~----~~g~~~~~~e~~la~~~g---~~~~v~~~sgt~aL~~~l~al-~--~------------ 68 (376)
T TIGR02379 11 GQELEYIAEAISEGKLS----GDGPFSRRCETWLENRTG---TKKALLTPSCTAALEMAALLL-D--I------------ 68 (376)
T ss_pred HHHHHHHHHHHHcCCcc----CCcHHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHc-C--C------------
Confidence 45577777777653321 235678899999999887 468999999999998888765 0 0
Q ss_pred CccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCC-chhhhccccccc
Q 003472 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHKD 577 (817)
Q Consensus 499 ~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P-~~~~~~~~~~~d 577 (817)
.....||....+|.+. ..++...|.. +..++.. +.
T Consensus 69 -----~pGd~Viv~~~t~~~~-~~~~~~~G~~----------------------------~v~vd~d~~~---------- 104 (376)
T TIGR02379 69 -----QPGDEVIMPSYTFVST-ANAFVLRGAK----------------------------IVFVDIRPDT---------- 104 (376)
T ss_pred -----CCcCEEEECCCCcHHH-HHHHHHcCCE----------------------------EEEEecCCCc----------
Confidence 1123677777776653 2222221111 0011110 00
Q ss_pred ccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcE
Q 003472 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (817)
Q Consensus 578 ~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilL 657 (817)
++ + | .+.+++.+. .++.+|+ |+ . ..|...+ +++|.++|++||+++
T Consensus 105 --~~-~--------d--------~~~le~~i~--------~~tk~Ii--p~-~-~~G~~~d----~~~I~~la~~~~i~v 149 (376)
T TIGR02379 105 --MN-I--------D--------ETLIESAIT--------HRTKAIV--PV-H-YAGVACD----MDTIMALANKHQLFV 149 (376)
T ss_pred --CC-C--------C--------HHHHHHhcC--------cCceEEE--Ee-C-CCCCccC----HHHHHHHHHHCCCEE
Confidence 00 0 0 144555553 1344555 54 3 2455554 789999999999999
Q ss_pred EEeeeeeccccccccchhhhcCCCCceeecc----cccCCCCCcceEEEec-hHHHhhhcC---CCcc--c-------e-
Q 003472 658 IFDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFVG---DSKL--K-------A- 719 (817)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv~PDivtlg----K~LggGy~PlsAvl~s-~~i~d~~~~---~~~~--~-------~- 719 (817)
|.|++|+ +|.. +.-...|.--|+.+|| |.++.| ...|++++. +++++.+.. .... . .
T Consensus 150 IeDaa~~-~g~~---~~~~~~g~~~~~~~fSf~~~K~l~~g-~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 224 (376)
T TIGR02379 150 IEDAAQG-VMST---YKGRALGSIGHLGTFSFHETKNYTSG-GEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKY 224 (376)
T ss_pred EEECccc-cCCc---cCCcccCCCCCEEEEeCCCCCcCccc-CCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcc
Confidence 9999994 5432 1112334445888998 998876 467777765 677766531 1100 0 0
Q ss_pred --eecccCCCCCHHHHHHHHHHHHHhcC
Q 003472 720 --LLHGHSYSAHALGCAAAAKSIKWFKD 745 (817)
Q Consensus 720 --~~h~~T~~gnPla~AAAlA~L~~l~~ 745 (817)
...|+.|--+.+.+|.+++.|+.+++
T Consensus 225 ~~~~~g~n~~~~~~~Aa~g~~qL~~l~~ 252 (376)
T TIGR02379 225 TWRDIGSSYLPSELQAAYLWAQLEQADR 252 (376)
T ss_pred eeeeecccCCccHHHHHHHHHHHHHhHH
Confidence 01355566678889999898988854
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-06 Score=97.69 Aligned_cols=262 Identities=11% Similarity=0.048 Sum_probs=147.9
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCC-----CChHHHHHHHHHHhhcCCCCcceEEEeCChHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~-----~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~ 474 (817)
.|||.. ..|.- .+.+.+|+.+.+........... ..+...++.+.|+++++.. -+.++|++++++|+
T Consensus 2 ~yld~a------~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~i~~~~g~t~a~ 73 (381)
T PRK02948 2 IYLDYA------ATTPM-SKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGE-EQGIYFTSGGTESN 73 (381)
T ss_pred EeccCC------CCCCC-CHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCcHHHHH
Confidence 467743 34666 89999999887765422110001 1244557778888888642 35789999999999
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCccc
Q 003472 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (817)
Q Consensus 475 E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (817)
..+++.+.+... ++.+.|......|.+.......... . |.
T Consensus 74 ~~~~~~~~~~~~------------------~~g~~vv~~~~~h~s~~~~~~~~~~--~------------g~-------- 113 (381)
T PRK02948 74 YLAIQSLLNALP------------------QNKKHIITTPMEHASIHSYFQSLES--Q------------GY-------- 113 (381)
T ss_pred HHHHHHHHHhcc------------------CCCCEEEECCcccHHHHHHHHHHHh--C------------CC--------
Confidence 999987732111 1123444555666544333221100 0 00
Q ss_pred ccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 003472 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (817)
Q Consensus 555 ~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG 634 (817)
.+..++..... ..| .+.+++.+. ++...|+++-+ ....|
T Consensus 114 ---~v~~v~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~lv~~~~~-~n~tG 152 (381)
T PRK02948 114 ---TVTEIPVDKSG-----------LIR------------------LVDLERAIT--------PDTVLASIQHA-NSEIG 152 (381)
T ss_pred ---EEEEEeeCCCC-----------CCC------------------HHHHHHhcC--------CCCEEEEEECC-cCCcE
Confidence 00011110000 011 245555553 13456777775 77889
Q ss_pred cccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC-CCCcceEEEechHH-Hhh
Q 003472 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GVIPLAATLATNAV-FDS 710 (817)
Q Consensus 635 ~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg-Gy~PlsAvl~s~~i-~d~ 710 (817)
.+.+ +++|.++|+++|+++|+|++| .||.... -.+.+ ..|++ ++.|.+|- | +|++++++++ +..
T Consensus 153 ~~~~----~~~I~~l~~~~~~~vivD~~~-~~g~~~~--~~~~~--~~d~~~~s~~K~~gp~G---~G~l~~~~~~~~~~ 220 (381)
T PRK02948 153 TIQP----IAEIGALLKKYNVLFHSDCVQ-TFGKLPI--DVFEM--GIDSLSVSAHKIYGPKG---VGAVYINPQVRWKP 220 (381)
T ss_pred eehh----HHHHHHHHHHcCCEEEEEChh-hcccccc--CcccC--CCCEEEecHHhcCCCCc---EEEEEEcCCCCCCC
Confidence 8887 889999999999999999998 4765422 12222 46776 77897652 3 5777777764 111
Q ss_pred hcC-CCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHH
Q 003472 711 FVG-DSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (817)
Q Consensus 711 ~~~-~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l 767 (817)
... ......+ ..++.|+.+.+++.++|+.+.+ ..++..++.+.+.+++.+.+
T Consensus 221 ~~~~~~~~~~~---~~~t~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~~l~~~L 273 (381)
T PRK02948 221 VFPGTTHEKGF---RPGTVNVPGIAAFLTAAENILK--NMQEESLRFKELRSYFLEQI 273 (381)
T ss_pred cccCCCCCCCc---CCCCccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 110 0000000 2345788888999999987643 13444555555665554433
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.6e-06 Score=96.86 Aligned_cols=209 Identities=14% Similarity=0.093 Sum_probs=121.9
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHH---hccccCCCCC-----CChHHHHHHHHHHhhcCCCCcceEEEeCChH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAA---RFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGS 471 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~---~~~~~~~~~~-----~~~~~~eLae~L~~~~~~~~~~~v~f~~SGs 471 (817)
.|+|..+ .+-- ++.+.+|+.+.+. .+........ ..+...++.++++++++.. .+.++|+++|+
T Consensus 5 iyld~a~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~-~~~v~~~~g~t 76 (404)
T PRK14012 5 IYLDYSA------TTPV-DPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGAD-PREIVFTSGAT 76 (404)
T ss_pred EEecCcC------CCCC-CHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcC-cCeEEEeCCHH
Confidence 6788654 3555 8999999988775 2221110000 0134557778888888743 35699999999
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCC
Q 003472 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (817)
Q Consensus 472 eA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p 551 (817)
+|+..+++.+.+.+.+ . ...||.-... |.+...+...-. +. |.
T Consensus 77 ~al~~~l~~l~~~~~~-~----------------gd~Vi~~~~~-~~s~~~~~~~~~----~~----------g~----- 119 (404)
T PRK14012 77 ESDNLAIKGAAHFYQK-K----------------GKHIITSKTE-HKAVLDTCRQLE----RE----------GF----- 119 (404)
T ss_pred HHHHHHHHHHHHhhcC-C----------------CCEEEEecCc-cHHHHHHHHHHH----hC----------CC-----
Confidence 9999999876222111 1 1245555554 443332221100 00 00
Q ss_pred cccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 003472 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (817)
Q Consensus 552 ~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg 631 (817)
.+..++.+... ..| .+.+++.+.+ +..+|++..+ +.
T Consensus 120 ------~~~~v~~~~~g-----------~~d------------------~~~l~~~i~~--------~t~lv~~~~~-~n 155 (404)
T PRK14012 120 ------EVTYLDPQSNG-----------IID------------------LEKLEAAMRD--------DTILVSIMHV-NN 155 (404)
T ss_pred ------EEEEEccCCCC-----------cCC------------------HHHHHHhcCC--------CCEEEEEECc-CC
Confidence 00111111000 001 2456666642 3457777776 77
Q ss_pred CCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCCCCCcceEEEechHHH
Q 003472 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVF 708 (817)
Q Consensus 632 ~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~LggGy~PlsAvl~s~~i~ 708 (817)
..|.+.+ +++|.++|+++|+++|+|++|+ +|..- .+.....+|+++++ |.+|.+ .+|+++++++..
T Consensus 156 ~tG~~~~----~~~I~~la~~~g~~vivD~a~~-~g~~~----~~~~~~~~D~~~~s~~K~~gp~--g~G~l~~~~~~~ 223 (404)
T PRK14012 156 EIGVIQD----IAAIGEICRERGIIFHVDAAQS-VGKVP----IDLSKLKVDLMSFSAHKIYGPK--GIGALYVRRKPR 223 (404)
T ss_pred Cccchhh----HHHHHHHHHHcCCEEEEEcchh-cCCcc----cCcccCCCCEEEEehhhccCCC--ceEEEEEecCCC
Confidence 7888876 8999999999999999999995 44331 11112358999887 966532 467888887643
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.1e-06 Score=92.36 Aligned_cols=173 Identities=13% Similarity=0.055 Sum_probs=95.6
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc-c-chhhhcCCCCc-e--eecccccC-CC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-E-TTADLLGCVPD-I--ACYGKLLT-GG 694 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~-~-~a~e~~gv~PD-i--vtlgK~Lg-gG 694 (817)
+.++..| ..=.|.+. +.+-+++|.++|++||+++|+||+...|.-.+. . ......+..+. + -+|||.+| .|
T Consensus 170 ~v~l~~P--~NPTG~~~-s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~G 246 (389)
T PRK08068 170 LMYLNYP--NNPTGAVA-TKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAG 246 (389)
T ss_pred EEEEECC--CCCCCCcC-CHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCcc
Confidence 4455557 34446655 788899999999999999999999966543332 1 11222232222 2 38999997 67
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+=+|.+++++++++.+.... .....+..+....++.++|. +.++..+++.+..+..++. +.+.++++
T Consensus 247 -lRiG~~~~~~~l~~~l~~~~------~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~r~~----~~~~L~~~ 313 (389)
T PRK08068 247 -WRVAFAVGNESVIEAINLLQ------DHLFVSLFGAIQDAAIEALL--SDQSCVAELVARYESRRNA----FISACREI 313 (389)
T ss_pred -ceeEeEecCHHHHHHHHHHH------hhccCCCChHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHH----HHHHHHHC
Confidence 78888999999998875321 11112223334444444442 1222223333333333332 33344444
Q ss_pred CCcceEEee-eeEEEEEEecCCCCCCcchHHHHHHHHHH-cCCC
Q 003472 775 RTVQRVVAL-GTLCAIELQAAGCNAGYCLIELFLYNFLT-TGMH 816 (817)
Q Consensus 775 p~V~~VrG~-Glm~gIel~~~~~~~~~~~~~~~~~~~l~-~Gv~ 816 (817)
.+ .-.... |+++-+.+.+. .....+...+++ +||.
T Consensus 314 g~-~~~~~~g~~~~~v~~~~~------~~~~~~~~~l~~~~gi~ 350 (389)
T PRK08068 314 GW-EVDAPKGSFFAWMPVPKG------YTSEQFADLLLEKAHVA 350 (389)
T ss_pred CC-cccCCCeeEEEEEECCCC------CCHHHHHHHHHHhCCEE
Confidence 42 112333 45567777542 133567777775 5763
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1e-06 Score=100.07 Aligned_cols=250 Identities=13% Similarity=0.118 Sum_probs=138.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
+.++...+|+++|+++.+. +.+++++||++|+..++.... +.| ..||+.+..|.+.
T Consensus 62 ~~~pt~~~Le~~lA~l~g~---~~~l~~~sgt~Ai~~~l~al~-----~~G----------------D~Vl~~~~~y~~~ 117 (394)
T PRK07050 62 HATPTSLALAQRLAEIEGG---RHALLQPSGLAAISLVYFGLV-----KAG----------------DDVLIPDNAYGPN 117 (394)
T ss_pred CCCHHHHHHHHHHHHHhCC---CeEEEeccHHHHHHHHHHHHh-----CCC----------------CEEEEecCCcccH
Confidence 4577788999999999873 689999999999999997662 111 2677777777642
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
....... .. + .|. .. .|-+. .+
T Consensus 118 -~~~~~~~-~~--~----------~Gi-------------~v-----------------~~vd~-------~~------- 139 (394)
T PRK07050 118 -RDHGEWL-AR--D----------FGI-------------TV-----------------RFYDP-------LI------- 139 (394)
T ss_pred -HHHHHHH-HH--h----------cCe-------------EE-----------------EEECC-------CC-------
Confidence 2110000 00 0 000 00 00010 00
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.+. .+..+|++|-. ....| +...+++|.++|+++|+++|+||++. .| ..+.--..|
T Consensus 140 -~~~l~~~i~--------~~tklV~le~p-~Np~~----~~~di~~I~~ia~~~gi~livD~a~a-~~---~~~~~l~~G 201 (394)
T PRK07050 140 -GAGIADLIQ--------PNTRLIWLEAP-GSVTM----EVPDVPAITAAARARGVVTAIDNTYS-AG---LAFKPFEHG 201 (394)
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CCCCc----cHhhHHHHHHHHHHcCCEEEEECCcc-cc---cccCHHHcC
Confidence 023555553 24567888875 33333 55669999999999999999999984 22 211111123
Q ss_pred CCCcee--ecccccCCCC-CcceEEEe-chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHH
Q 003472 680 CVPDIA--CYGKLLTGGV-IPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (817)
Q Consensus 680 v~PDiv--tlgK~LggGy-~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~ 755 (817)
.|++ .+.|.++||- ++.|++++ ++++++.+.... ..+| -+.+|..|..++..|+-+.. ..++..++
T Consensus 202 --aDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~----~~~G--~~~~~~~a~l~lr~l~tl~~--Rl~~~~~~ 271 (394)
T PRK07050 202 --VDISVQALTKYQSGGSDVLMGATITADAELHAKLKLAR----MRLG--IGVSADDCSLVLRGLPSLQV--RLAAHDRS 271 (394)
T ss_pred --CeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHH----HhcC--CCCCHHHHHHHHcCCCcHHH--HHHHHHHH
Confidence 4877 5799997642 56777776 566666553210 0112 23456555444332222211 12333333
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcceEE------------------eeeeEEEEEEecCCCCCCcchHHHHHHHH
Q 003472 756 RRILRELWDLELIQQISSHRTVQRVV------------------ALGTLCAIELQAAGCNAGYCLIELFLYNF 810 (817)
Q Consensus 756 ~~~lg~~l~~~l~~~l~~~p~V~~Vr------------------G~Glm~gIel~~~~~~~~~~~~~~~~~~~ 810 (817)
+.++. +.++++|.|..|. |.|-++.|++..+. +.+....|+.++
T Consensus 272 a~~la--------~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~---~~~~~~~~~~~l 333 (394)
T PRK07050 272 ALEVA--------EWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERY---SPAQVDAFVEAL 333 (394)
T ss_pred HHHHH--------HHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCC---CHHHHHHHHHcC
Confidence 33333 3444555554443 66888899986431 124455565554
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.6e-06 Score=96.99 Aligned_cols=222 Identities=14% Similarity=0.163 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHHHhccccC--C-CCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhcccccccc
Q 003472 418 QIELARDMGYTAARFGHVM--F-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~~~~--~-~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~ 494 (817)
++++.+|+.+.+..+.... . .+...+...+++++|+++.+. +.+++++||+.|+..++... ..
T Consensus 94 ~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~ga---e~alvv~sg~aAi~l~l~~l------~~----- 159 (454)
T TIGR00474 94 AEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGA---EDALVVNNNAAAVLLALNTL------AK----- 159 (454)
T ss_pred CHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHh------CC-----
Confidence 7999999999988765211 1 112245567899999999984 56888999999998888433 11
Q ss_pred ccCCCccccccceEEEEEcCCc--cCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcc
Q 003472 495 FLGKDTTEKCIELKVLALKGSY--HGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (817)
Q Consensus 495 ~~~~~~~~~~~r~~II~~~gsy--HG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~ 572 (817)
...||+.++.+ +|.+ .++... . ...| +.....+
T Consensus 160 -----------GdeVIvs~~e~v~~ggs---~~i~~~--~---------~~~G-------------~~~~~v~------- 194 (454)
T TIGR00474 160 -----------GKEVIVSRGELVEIGGS---FRIPDV--M---------EQSG-------------AKLVEVG------- 194 (454)
T ss_pred -----------cCEEEECCChhhhhcch---hhHHHH--H---------HHcC-------------CEEEEeC-------
Confidence 23566666553 2211 111000 0 0000 0000000
Q ss_pred cccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccc-ccCCC--cccCCHHHHHHHHHH
Q 003472 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV-HAAGG--MHMVDPLFQRILVKE 649 (817)
Q Consensus 573 ~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~-qg~gG--~~~pp~~yl~~Lr~L 649 (817)
+++. .. .+.+++.+. .+.++|+++-.. ....| ...+ +++|.++
T Consensus 195 -------~~~~----------~~-----l~dle~aI~--------~~T~lv~~~h~sN~~~~G~~~~~d----l~~I~~l 240 (454)
T TIGR00474 195 -------TTNR----------TH-----LKDYEDAIT--------ENTALLLKVHTSNYRIVGFTEEVS----IAELVAL 240 (454)
T ss_pred -------CCCC----------CC-----HHHHHHhcC--------cCCEEEEEEccCcccccCCCCCCC----HHHHHHH
Confidence 1110 00 134555553 245666666541 12234 3455 9999999
Q ss_pred HhhcCCcEEEeeeeeccccccccc---------hhhhcCCCCceeecc--cccCCCCCcceEEEechHHHhhhcCCCccc
Q 003472 650 CQNRKIPVIFDEVFTGFWRLGVET---------TADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLK 718 (817)
Q Consensus 650 c~~~GilLI~DEV~TGfGRtG~~~---------a~e~~gv~PDivtlg--K~LggGy~PlsAvl~s~~i~d~~~~~~~~~ 718 (817)
|++||+++|+|- |+|-.+... ..+......|++++| |.|||- . .|+++++++..+.+....
T Consensus 241 a~~~g~~vivD~---~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp-~-~G~i~g~~~~i~~l~~~~--- 312 (454)
T TIGR00474 241 GREHGLPVMEDL---GSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGP-Q-AGIIVGKKELIERLKKNP--- 312 (454)
T ss_pred HHHcCCeEEEEC---CCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCC-e-EEEEEECHHHHHhhhhch---
Confidence 999999999995 444443321 112223357999999 999875 2 577889998887664321
Q ss_pred eeecccCCCCCHHHHHHHHHHHHHh
Q 003472 719 ALLHGHSYSAHALGCAAAAKSIKWF 743 (817)
Q Consensus 719 ~~~h~~T~~gnPla~AAAlA~L~~l 743 (817)
..-..--+-+..|+-.++|..+
T Consensus 313 ---l~r~lr~~k~~la~l~~~l~~~ 334 (454)
T TIGR00474 313 ---LTRALRVDKLTLAALEATLRLY 334 (454)
T ss_pred ---hHHHHhhChHHHHHHHHHHHHH
Confidence 1111223334445555566554
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.5e-05 Score=90.37 Aligned_cols=243 Identities=14% Similarity=0.120 Sum_probs=137.6
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhc-cccCCCCCCChHHHHHHHHHHhhcCCCC--cceEEEeCChHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKGW--ASRAYFSDNGSTAIEI 476 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~~~~~--~~~v~f~~SGseA~E~ 476 (817)
.+||+..|... ++. .+.+.+++.+.+... ..+....+..+....+++.+....+-.. -+.+++++++++|+..
T Consensus 31 ~~i~l~~~~~~--~~~--~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~ 106 (391)
T PRK07309 31 GILKLTLGEPD--FTT--PDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSA 106 (391)
T ss_pred CeEEcCCCCCC--CCC--CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence 56777665432 332 567888888776542 1121122233444455555554322110 1479999999999999
Q ss_pred HHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCccccc
Q 003472 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (817)
Q Consensus 477 AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (817)
++.... .. ...|+.-..+|.+.. ......|..
T Consensus 107 ~~~~~~-----~~----------------gd~vl~~~p~y~~~~-~~~~~~g~~-------------------------- 138 (391)
T PRK07309 107 SLTAIL-----EP----------------GDKVLLPAPAYPGYE-PIVNLVGAE-------------------------- 138 (391)
T ss_pred HHHHhc-----CC----------------CCEEEEeCCCCcchH-HHHHHcCCE--------------------------
Confidence 888651 11 236777777777742 222221111
Q ss_pred CcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCCc
Q 003472 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGM 635 (817)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvE-PV~qg~gG~ 635 (817)
+..++.+.. .|. + + .+.+++.+++ ..+++.+|++. | +.-.|.
T Consensus 139 --~~~~~~~~~-----------~~~-~--------d--------~~~l~~~~~~-----~~~~~~~i~l~~P--~NPtG~ 181 (391)
T PRK07309 139 --IVEIDTTEN-----------DFV-L--------T--------PEMLEKAILE-----QGDKLKAVILNYP--ANPTGV 181 (391)
T ss_pred --EEEEecCCc-----------CCc-C--------C--------HHHHHHHhhc-----cCCCeEEEEEECC--CCCCCc
Confidence 011111000 000 0 0 2456666652 23356667665 5 445566
Q ss_pred ccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-chhhhcCCCCc--ee--ecccccC-CCCCcceEEEechHHHh
Q 003472 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD--IA--CYGKLLT-GGVIPLAATLATNAVFD 709 (817)
Q Consensus 636 ~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a~e~~gv~PD--iv--tlgK~Lg-gGy~PlsAvl~s~~i~d 709 (817)
.. +.+-+++|.++|++||+++|+||++..|--.|.. .....+ .+| ++ +++|.+| .| +-+|.+++++++++
T Consensus 182 ~~-s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~g~~G-lRvG~~v~~~~~~~ 257 (391)
T PRK07309 182 TY-SREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEY--LPDQTILINGLSKSHAMTG-WRIGLIFAPAEFTA 257 (391)
T ss_pred Cc-CHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHh--ccCCEEEEecChhhccCcc-ceeEEEEeCHHHHH
Confidence 55 6778999999999999999999999765222321 111111 233 33 7899998 68 78999999999998
Q ss_pred hhcCCCccceeecccCCCCCHHHHHHHHHHHH
Q 003472 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIK 741 (817)
Q Consensus 710 ~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~ 741 (817)
.+... ....+.+.++++..++.+.|+
T Consensus 258 ~~~~~------~~~~~~~~~~~~q~~~~~~l~ 283 (391)
T PRK07309 258 QLIKS------HQYLVTAATTMAQFAAVEALT 283 (391)
T ss_pred HHHHH------HhhcccCCChHHHHHHHHHHh
Confidence 87531 112233556777666665553
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-06 Score=98.33 Aligned_cols=145 Identities=14% Similarity=0.058 Sum_probs=91.5
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee-ccccccccchhhhcCCCCcee--ecccccCC--
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIA--CYGKLLTG-- 693 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-GfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg-- 693 (817)
++..|++|-. ..-.|.+.+ +++|.++|+++|+++|+||++. .+|. ....+..|++ ++.|.|+|
T Consensus 132 ~t~lV~le~p-~NPtg~v~d----i~~I~~~a~~~g~~lvVD~t~~~~~~~-------~p~~~g~Divv~S~sK~l~G~~ 199 (366)
T PRK07582 132 GADLVLAETP-SNPGLDVCD----LAALAAAAHAAGALLVVDNTTATPLGQ-------RPLELGADLVVASDTKALTGHS 199 (366)
T ss_pred CceEEEEECC-CCCCCCccC----HHHHHHHHHHcCCEEEEECCCCCcccc-------CchhcCCcEEEecccccccCCC
Confidence 3556777765 555665554 8999999999999999999983 3321 1122346877 67899976
Q ss_pred CCCcceEEEe-chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 694 GVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 694 Gy~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
| +.+|.+++ ++++.+.+... ....+-..+|..|..++..|+.+.. ..++..+++..+. +.++
T Consensus 200 g-~~~G~v~~~~~~l~~~l~~~------~~~~g~~~~~~~a~l~~r~l~tl~~--R~~~~~~na~~la--------~~L~ 262 (366)
T PRK07582 200 D-LLLGYVAGRDPELMAAVERW------RLLAGAIPGPFEAWLAHRSLGTLGL--RFARQCANALAVA--------ELLA 262 (366)
T ss_pred C-eeEEEEEcCcHHHHHHHHHH------HHHhCCCCCHHHHHHHHhccccHHH--HHHHHHHHHHHHH--------HHHH
Confidence 5 45666776 46776655321 0111223468888877766665421 1234444444443 3455
Q ss_pred cCCCcceEE------------------eeeeEEEEEEe
Q 003472 773 SHRTVQRVV------------------ALGTLCAIELQ 792 (817)
Q Consensus 773 ~~p~V~~Vr------------------G~Glm~gIel~ 792 (817)
++|.|..|. |.|-|+.|++.
T Consensus 263 ~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~ 300 (366)
T PRK07582 263 GHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA 300 (366)
T ss_pred hCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC
Confidence 667666655 68999999996
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-05 Score=90.07 Aligned_cols=173 Identities=17% Similarity=0.126 Sum_probs=100.0
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchh-hhcCCCCcee---ecccccC-CCCC
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCVPDIA---CYGKLLT-GGVI 696 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~-e~~gv~PDiv---tlgK~Lg-gGy~ 696 (817)
.++..| +.-.|.+. +.+.+++|.++|++||+++|.||+...|--.+..-.. ...+..+.++ +|||.+| .| +
T Consensus 166 v~l~~p--~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G-l 241 (384)
T PRK06348 166 IILNSP--NNPTGAVF-SKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTG-W 241 (384)
T ss_pred EEEeCC--CCCCCcCC-CHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCcc-c
Confidence 344555 45556655 7889999999999999999999999876211221111 1112222332 7899998 68 7
Q ss_pred cceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC
Q 003472 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (817)
Q Consensus 697 PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~ 776 (817)
=+|.+++++++.+.+..- ....+++.++++-.++.++|+.. +...+++.+.-+...++ +.+.+++.+.
T Consensus 242 RiG~~v~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~~----~~~~L~~~~~ 309 (384)
T PRK06348 242 RIGYVIAPDYIIETAKII------NEGICFSAPTISQRAAIYALKHR--DTIVPLIKEEFQKRLEY----AYKRIESIPN 309 (384)
T ss_pred cceeeecCHHHHHHHHHH------HHhccCCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHH----HHHHHhcCCC
Confidence 889999999988877421 23346777888888877777532 11222222222222222 3333444443
Q ss_pred cceEEe-eeeEEEEEEecCCCCCCcchHHHHHHHHHH-cCC
Q 003472 777 VQRVVA-LGTLCAIELQAAGCNAGYCLIELFLYNFLT-TGM 815 (817)
Q Consensus 777 V~~VrG-~Glm~gIel~~~~~~~~~~~~~~~~~~~l~-~Gv 815 (817)
+.-... -|+++-+++...+ .....+...+++ .||
T Consensus 310 ~~~~~p~gg~~~~~~~~~~~-----~~~~~l~~~l~~~~gv 345 (384)
T PRK06348 310 LSLHPPKGSIYAFINIKKTG-----LSSVEFCEKLLKEAHV 345 (384)
T ss_pred ceeccCCeeEEEEEecccCC-----CCHHHHHHHHHHhCCE
Confidence 221122 3666677775321 123456666664 575
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-05 Score=89.86 Aligned_cols=168 Identities=13% Similarity=0.129 Sum_probs=96.3
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccC-CCCCcc
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLT-GGVIPL 698 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lg-gGy~Pl 698 (817)
.+|.-| +.--|.. .+.+.+++|.++|+++|+++|+||+...|-..+............+++ +++|.+| .| +-+
T Consensus 146 v~l~~p--~NPTG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~Ri 221 (356)
T PRK08056 146 LFLCTP--NNPTGLL-PERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPG-LRL 221 (356)
T ss_pred EEEeCC--cCCCCCC-CCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcc-hhh
Confidence 344456 4555664 588999999999999999999999987773223211111111122333 7899999 78 789
Q ss_pred eEEEec-hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 003472 699 AATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (817)
Q Consensus 699 sAvl~s-~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V 777 (817)
|.+++. +++++.+... ...++.+.++.+++.+.| +.++......+..+..++ .+.+.+++.+.+
T Consensus 222 G~~v~~~~~~~~~l~~~--------~~~~~~~~~~~~~a~~~l---~~~~~~~~~~~~~~~~r~----~l~~~L~~~~~~ 286 (356)
T PRK08056 222 GYLVNSDDAAVARMRRQ--------QMPWSINAFAALAGEVIL---QDRAYQQATWQWLAEEGA----RFYQALCALPLL 286 (356)
T ss_pred eeeecCCHHHHHHHHHh--------CCCCchhHHHHHHHHHHh---CCHHHHHHHHHHHHHHHH----HHHHHHhcCCCc
Confidence 989874 5676666421 233555666666665555 332222222222222222 344445555433
Q ss_pred ceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 778 QRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 778 ~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.-....|.++-+.+..+ ...+...++++||+
T Consensus 287 ~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~gI~ 317 (356)
T PRK08056 287 TVWPGRANYLFLRCERP--------DIDLQRALLTQRIL 317 (356)
T ss_pred EEcCCCCcEEEEEcCCC--------hHHHHHHHHHCCeE
Confidence 22233466655555422 24577788888874
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.1e-06 Score=95.56 Aligned_cols=166 Identities=12% Similarity=0.117 Sum_probs=100.2
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhh--cCCcEEEeeeeecccccccc-chhhhcCCCCcee---ecccccC-C
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA---CYGKLLT-G 693 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~--~GilLI~DEV~TGfGRtG~~-~a~e~~gv~PDiv---tlgK~Lg-g 693 (817)
.+|++... +.-.|.+.+ .+++.++|++ +|+++|+||++..|-..+.. ...+...-.++++ ++||.+| .
T Consensus 147 ~~v~l~~p-~NPtG~~~~----~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 221 (352)
T PRK03321 147 RLIFVCNP-NNPTGTVVT----PAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLA 221 (352)
T ss_pred CEEEEeCC-CCCcCCCcC----HHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhH
Confidence 34444433 566687775 4455666654 69999999999776443321 1222333346666 6899998 6
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +-+|.+++++++++.+.. ...+++.++++.+++.++|+.. +...+++ +.+.+. +..+.+.+.+
T Consensus 222 G-lRiG~~v~~~~~~~~~~~--------~~~~~~~s~~~q~~a~~~l~~~--~~~~~~~----~~~~~~-r~~~~~~L~~ 285 (352)
T PRK03321 222 G-LRVGYAVGHPEVIAALRK--------VAVPFSVNSLAQAAAIASLAAE--DELLERV----DAVVAE-RDRVRAALRA 285 (352)
T ss_pred H-HhhhhhcCCHHHHHHHHH--------hcCCCCCCHHHHHHHHHHhcCH--HHHHHHH----HHHHHH-HHHHHHHHHH
Confidence 7 788889999999998853 1246778899988888887522 1122222 222111 1234444544
Q ss_pred CCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++.. .....|.++-+.+.. ....+...+.++||+
T Consensus 286 ~~~~-~~~~~g~~i~i~l~~--------~~~~~~~~l~~~gI~ 319 (352)
T PRK03321 286 AGWT-VPPSQANFVWLPLGE--------RTADFAAAAAEAGVV 319 (352)
T ss_pred CCCc-cCCCCCCEEEEeCCC--------CHHHHHHHHHHCCEE
Confidence 4432 123347887777632 235677778888874
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.8e-06 Score=92.40 Aligned_cols=241 Identities=14% Similarity=0.061 Sum_probs=138.0
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhc-cccCCCCCCChHHHHHHHHHHhhcCCCC--cceEEEeCChHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKGW--ASRAYFSDNGSTAIEI 476 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~~~~~--~~~v~f~~SGseA~E~ 476 (817)
.+||+..|.. .++ - .+.+.+++.+.+.+. ..+....+..+...++++.+.+..|... -+.++++++|++|...
T Consensus 30 ~~i~l~~g~p--~~~-~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~ 105 (384)
T PRK12414 30 DALNLSQGAP--NFA-P-DPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYA 105 (384)
T ss_pred CeEEcCCCCC--CCC-C-CHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHH
Confidence 4677766543 243 2 688899888766542 1111123345667788888887665321 1369999999999998
Q ss_pred HHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCccccc
Q 003472 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (817)
Q Consensus 477 AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (817)
+++... . + ..+|+..+-+|.+.. ......|..
T Consensus 106 ~~~~l~-----~---------------~-gd~Vlv~~p~y~~~~-~~~~~~g~~-------------------------- 137 (384)
T PRK12414 106 AISALV-----H---------------P-GDEVIYFEPSFDSYA-PIVRLQGAT-------------------------- 137 (384)
T ss_pred HHHHhc-----C---------------C-CCEEEEeCCCccchH-HHHHHcCCE--------------------------
Confidence 887651 1 1 136777777775421 111111110
Q ss_pred CcceeecCC-chhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003472 557 NSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (817)
Q Consensus 557 ~~~~~v~~P-~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~ 635 (817)
...++.. +.+ ..| .+.+++.+. .++.+|++-.. +.-.|.
T Consensus 138 --~~~v~~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~~v~i~~p-~NPTG~ 177 (384)
T PRK12414 138 --PVAIKLSPEDF-----------RVN------------------WDEVAAAIT--------PRTRMIIVNTP-HNPSAT 177 (384)
T ss_pred --EEEEecCcccc-----------ccC------------------HHHHHhhcC--------cccEEEEEcCC-CCCCCc
Confidence 0011100 000 001 134555543 23445555332 455566
Q ss_pred ccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc--hhhhcCCCCcee---ecccccC-CCCCcceEEEechHHHh
Q 003472 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET--TADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFD 709 (817)
Q Consensus 636 ~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~--a~e~~gv~PDiv---tlgK~Lg-gGy~PlsAvl~s~~i~d 709 (817)
+. +++-+++|.++|++||+++|+||+..-|--.|... ...+.+....++ +|||.+| .| +=+|.+++.+++++
T Consensus 178 ~~-s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pG-lRiG~~v~~~~l~~ 255 (384)
T PRK12414 178 VF-SAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTG-WRVGYCLAPAELMD 255 (384)
T ss_pred CC-CHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCcc-ceEEEEecCHHHHH
Confidence 65 67889999999999999999999986441122211 111112222232 7899997 68 78899999999988
Q ss_pred hhcCCCccceeecccCCCCCHHHHHHHHHHH
Q 003472 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSI 740 (817)
Q Consensus 710 ~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L 740 (817)
.+..- ....+++.+.++..++.+.|
T Consensus 256 ~l~~~------~~~~~~~~s~~~q~a~~~~l 280 (384)
T PRK12414 256 EIRKV------HQFMVFSADTPMQHAFAEAL 280 (384)
T ss_pred HHHHH------HhheecCCCcHHHHHHHHHh
Confidence 77431 12245666777766665554
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.5e-07 Score=99.64 Aligned_cols=125 Identities=19% Similarity=0.183 Sum_probs=72.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCC
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (817)
+.+++.+++ ++..-+.++..|. . .|...+ +++|.++|+++|+++|+||+|.+.-+.+..+-.......
T Consensus 143 ~~l~~~l~~-----~~~~k~v~l~~p~-~--~G~~~d----l~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~ 210 (294)
T cd00615 143 ETFKKALIE-----HPDAKAAVITNPT-Y--YGICYN----LRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAG 210 (294)
T ss_pred HHHHHHHHh-----CCCceEEEEECCC-C--CCEecC----HHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcC
Confidence 556677753 2233345666674 3 467665 899999999999999999999642222221111112235
Q ss_pred Ccee--ecccccCCCCCcc-eEEEechHHHh--hhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcC
Q 003472 682 PDIA--CYGKLLTGGVIPL-AATLATNAVFD--SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD 745 (817)
Q Consensus 682 PDiv--tlgK~LggGy~Pl-sAvl~s~~i~d--~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~ 745 (817)
.|++ ++.|.++| ++. +.+..+++..+ .+.. .+....|.+.+.+.+++..++++++.+
T Consensus 211 ~div~~S~hK~l~g--~~~~~~l~~~~~~~~~~~~~~-----~~~~~~ttsps~~~~asl~~a~~~~~~ 272 (294)
T cd00615 211 ADIVVQSTHKTLPA--LTQGSMIHVKGDLVNPDRVNE-----ALNLHQSTSPSYLILASLDVARAMMAL 272 (294)
T ss_pred CcEEEEchhcccch--HhHHHHHHhCCCcCCHHHHHH-----HHHHHCCCCcHHHHHHHHHHHHHHHHH
Confidence 6877 67898854 223 23334333211 1111 111234566778888888888888754
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-05 Score=91.10 Aligned_cols=175 Identities=11% Similarity=0.113 Sum_probs=97.2
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc--chhhhcCCCCc---eeecccccC-C
Q 003472 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGCVPD---IACYGKLLT-G 693 (817)
Q Consensus 620 iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~--~a~e~~gv~PD---ivtlgK~Lg-g 693 (817)
+.+|++-.. +.-.|.+. +++-+++|.++|++||+++|.||+...|--.+.. -.....+..+. +.+++|.+| .
T Consensus 161 ~klv~~~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 238 (389)
T PRK05957 161 TRAIVTISP-NNPTGVVY-PEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFA 238 (389)
T ss_pred ceEEEEeCC-CCCCCcCc-CHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCc
Confidence 334444332 55567666 6788999999999999999999998766222211 11111122222 347999997 6
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcC-cCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~-~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
| +-+|.+++++++++.+... ....+.+.+.++..++..+| ++ ++..++..+..+...+ .+.+.++
T Consensus 239 G-lRiG~~~~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l---~~~~~~~~~~~~~~~~~r~----~l~~~L~ 304 (389)
T PRK05957 239 S-WRIGYMVIPIHLLEAIKKI------QDTILICPPVVSQYAALGAL---QVGKSYCQQHLPEIAQVRQ----ILLKSLG 304 (389)
T ss_pred c-ceeEEEecCHHHHHHHHHH------HhhcccCCCcHHHHHHHHHH---hCChHHHHHHHHHHHHHHH----HHHHHHH
Confidence 8 7899999999999888531 11112233445555554444 33 2233333333333333 3444454
Q ss_pred cCCCcceE--EeeeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCCC
Q 003472 773 SHRTVQRV--VALGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 773 ~~p~V~~V--rG~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv~ 816 (817)
+.+.+..+ ..-|+++-+++... .....+...++ ++||+
T Consensus 305 ~~~~~~~~~~~~gg~~~~~~~~~~------~~~~~~~~~l~~~~gv~ 345 (389)
T PRK05957 305 QLQDRCTLHPANGAFYCFLKVNTD------LNDFELVKQLIREYRVA 345 (389)
T ss_pred hcCCCccccCCCeeEEEEEeCCCC------CChHHHHHHHHHHCCEE
Confidence 44432122 12266777777543 12345666666 46763
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.3e-06 Score=94.48 Aligned_cols=234 Identities=15% Similarity=0.129 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCC
Q 003472 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (817)
Q Consensus 419 P~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~ 498 (817)
++-.+++.+.+..... ...+...+|+++|+++++. +.+++++||++|+..|++.. . . ..
T Consensus 14 ~~e~~~~~~~l~~~~~-----~~g~~~~~le~~la~~~g~---~~~v~~~sgt~al~lal~al-~--~-~~--------- 72 (379)
T PRK11658 14 DEELAAVKEVLRSGWI-----TTGPKNQALEQAFCQLTGN---QHAIAVSSATAGMHITLMAL-G--I-GP--------- 72 (379)
T ss_pred HHHHHHHHHHHHcCCc-----cCCHhHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHc-C--C-CC---------
Confidence 4556777776664322 1246688999999999984 57889999999999998765 1 0 11
Q ss_pred CccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecC-Cchhhhccccccc
Q 003472 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKD 577 (817)
Q Consensus 499 ~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~-P~~~~~~~~~~~d 577 (817)
...||+-..+|.+. ..++...|... ..++. ++.+
T Consensus 73 -------Gd~Viv~~~~~~~~-~~~~~~~G~~~----------------------------v~vd~~~~~~--------- 107 (379)
T PRK11658 73 -------GDEVITPSLTWVST-LNMIVLLGATP----------------------------VMVDVDRDTL--------- 107 (379)
T ss_pred -------CCEEEECCCcHHHH-HHHHHHcCCEE----------------------------EEEecCCCcC---------
Confidence 13677777777653 22222222110 01111 0000
Q ss_pred ccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcE
Q 003472 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (817)
Q Consensus 578 ~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilL 657 (817)
..| .+.+++.+. .++.+|+ |+ .- .|...+ +++|.++|+++|+++
T Consensus 108 --~~d------------------~~~l~~~i~--------~~tkav~--~~-~~-~G~~~d----~~~i~~~a~~~gi~v 151 (379)
T PRK11658 108 --MVT------------------PEAIEAAIT--------PRTKAII--PV-HY-AGAPAD----LDAIRAIGERYGIPV 151 (379)
T ss_pred --CcC------------------HHHHHHhcc--------cCCeEEE--Ee-CC-CCCcCC----HHHHHHHHHHcCCeE
Confidence 001 145665554 1344555 43 22 355444 789999999999999
Q ss_pred EEeeeee-ccccccccchhhhcCCCCceeecc--cccCCCCCcceEEEec-hHHHhhhcC---CCcc-------------
Q 003472 658 IFDEVFT-GFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLAT-NAVFDSFVG---DSKL------------- 717 (817)
Q Consensus 658 I~DEV~T-GfGRtG~~~a~e~~gv~PDivtlg--K~LggGy~PlsAvl~s-~~i~d~~~~---~~~~------------- 717 (817)
|.|++|+ |.-..|+.. ..+|+ |+..|+ |.|++| ..|+++++ +++++.+.. ....
T Consensus 152 i~D~a~a~g~~~~~~~~--g~~g~--~~~Sf~~~K~l~~g--~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 225 (379)
T PRK11658 152 IEDAAHAVGTYYKGRHI--GARGT--AIFSFHAIKNITCA--EGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAP 225 (379)
T ss_pred EEECCCccCCeECCeec--CCCCC--EEEeCCCCCcCccc--CceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCC
Confidence 9999996 332223221 12343 666665 778765 45556654 666654421 1000
Q ss_pred --ceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHH
Q 003472 718 --KALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLE 766 (817)
Q Consensus 718 --~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~ 766 (817)
..+..|+.+.-+.+.+|.+++.|+.+++ ..++.+.+.+.+.+.
T Consensus 226 ~~~~~~~G~n~~~~~l~AAl~~~ql~~l~~------~~~~r~~~a~~~~~~ 270 (379)
T PRK11658 226 QAEVLTPGYKYNLADINAAIALVQLAKLEA------LNARRREIAARYLQA 270 (379)
T ss_pred cceeeccccccCcCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 0011234455567788888887776633 444445555544443
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-05 Score=90.06 Aligned_cols=172 Identities=12% Similarity=0.096 Sum_probs=98.7
Q ss_pred EEEEE-EccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc--chhhhcCCCCc----eeecccccC
Q 003472 620 IGALI-IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGCVPD----IACYGKLLT 692 (817)
Q Consensus 620 iAAvI-vEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~--~a~e~~gv~PD----ivtlgK~Lg 692 (817)
+.+|+ ..| +.=-|.+. +++-+++|.++|++||+++|.||++..|--.+.. ...+..+ .+| +-+|||.+|
T Consensus 167 ~k~v~l~~P--~NPTG~~~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~ 242 (399)
T PRK07681 167 AKMMILNFP--GNPVPAMA-HEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPG-AKEVGVEINSLSKSYS 242 (399)
T ss_pred ceEEEEeCC--CCCcCcCC-CHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCC-CcccEEEEeecccccC
Confidence 34444 447 44456655 7888999999999999999999999766212221 1111111 223 238899998
Q ss_pred -CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHH
Q 003472 693 -GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQI 771 (817)
Q Consensus 693 -gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l 771 (817)
.| +=+|.+++++++++.+... ....+++.+.++..++.+.|+-- +...++..+..+...+ .+.+.+
T Consensus 243 ~~G-lRiG~~i~~~~l~~~~~~~------~~~~~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~----~l~~~L 309 (399)
T PRK07681 243 LAG-SRIGYMIGNEEIVRALTQF------KSNTDYGVFLPIQKAACAALRNG--AAFCEKNRGIYQERRD----TLVDGF 309 (399)
T ss_pred Ccc-ceeEEEecCHHHHHHHHHH------HhhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHH----HHHHHH
Confidence 67 7888999999999887431 11234556666666665555321 1222222222222222 234445
Q ss_pred HcCCCcceEE-eeeeEEEEEEecCCCCCCcchHHHHHHHHHH-cCC
Q 003472 772 SSHRTVQRVV-ALGTLCAIELQAAGCNAGYCLIELFLYNFLT-TGM 815 (817)
Q Consensus 772 ~~~p~V~~Vr-G~Glm~gIel~~~~~~~~~~~~~~~~~~~l~-~Gv 815 (817)
+++++ .-.. .-|.++-+++.+. .....+...+++ +||
T Consensus 310 ~~~g~-~~~~p~~g~f~~~~l~~~------~~~~~~~~~l~~~~gv 348 (399)
T PRK07681 310 RTFGW-NVDKPAGSMFVWAEIPKG------WTSLSFAYALMDRANV 348 (399)
T ss_pred HHCCC-cccCCCeeeEEEEECCCC------CCHHHHHHHHHHhCCE
Confidence 55542 1111 2377777777532 123567777777 776
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-06 Score=98.53 Aligned_cols=82 Identities=16% Similarity=0.018 Sum_probs=53.9
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeec--ccccCCCCC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVI 696 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~LggGy~ 696 (817)
++.+|++|-. ..-.|.+.+ +++|.++|+++|+++|+|++++.. -.+. -.+...|++++ .|.++|.--
T Consensus 134 ~t~lV~lesP-~Nptg~~~d----i~~I~~la~~~gi~vivD~t~a~~-~~~~-----p~~~gaDivv~S~tK~l~g~~d 202 (380)
T PRK06176 134 NTKALYLETP-SNPLLKITD----LAQCASVAKDHGLLTIVDNTFATP-YYQN-----PLLLGADIVVHSGTKYLGGHSD 202 (380)
T ss_pred CceEEEEECC-CCCCceecC----HHHHHHHHHHcCCEEEEECCcccc-ccCC-----ccccCCCEEEecCceeccCCcc
Confidence 4678888876 555676665 889999999999999999999532 1222 22345688855 599976212
Q ss_pred cc-eEEEe-chHHHhhh
Q 003472 697 PL-AATLA-TNAVFDSF 711 (817)
Q Consensus 697 Pl-sAvl~-s~~i~d~~ 711 (817)
.+ |++++ ++++++.+
T Consensus 203 ~~gG~vv~~~~~~~~~~ 219 (380)
T PRK06176 203 VVAGLVTTNNEALAQEI 219 (380)
T ss_pred ceeeEEEecHHHHHHHH
Confidence 23 33555 34555544
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.9e-06 Score=97.45 Aligned_cols=162 Identities=14% Similarity=0.146 Sum_probs=99.8
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.+ .+.+++++||+.|+..++.... .. ...|++.+..|+|.
T Consensus 61 ~~~p~~~~Le~~lA~leg---~~~al~~~sG~~Ai~~al~~ll-----~~----------------GD~Vlv~~~~y~~t 116 (431)
T PRK08248 61 IMNPTTDVFEKRIAALEG---GIGALAVSSGQAAITYSILNIA-----SA----------------GDEIVSSSSLYGGT 116 (431)
T ss_pred CCCchHHHHHHHHHHHhC---CCcEEEECCHHHHHHHHHHHHh-----CC----------------CCEEEEccCchhhH
Confidence 346778899999999987 3689999999999999987552 11 13677777666553
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
...+...- .. .|. .+..++ ..|
T Consensus 117 -~~~~~~~~-~~------------~Gv-----------~v~~vd----------------~~d----------------- 138 (431)
T PRK08248 117 -YNLFAHTL-PK------------LGI-----------TVKFVD----------------PSD----------------- 138 (431)
T ss_pred -HHHHHHHH-Hh------------CCE-----------EEEEEC----------------CCC-----------------
Confidence 22111000 00 000 000110 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.+. +++.+|++|.. ..--|.+.+ +++|.++|+++|+++|+|+++. ++.. ..-..
T Consensus 139 -~e~l~~ai~--------~~tklV~l~sp-~NPtG~v~d----i~~I~~la~~~gi~vIvD~t~a----~~~~--~~pl~ 198 (431)
T PRK08248 139 -PENFEAAIT--------DKTKALFAETI-GNPKGDVLD----IEAVAAIAHEHGIPLIVDNTFA----SPYL--LRPIE 198 (431)
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEeCCCC----cccc--CChhH
Confidence 144555554 24668888865 555677776 7899999999999999999984 1211 11122
Q ss_pred CCCcee--ecccccCC-CCCcceEEEec
Q 003472 680 CVPDIA--CYGKLLTG-GVIPLAATLAT 704 (817)
Q Consensus 680 v~PDiv--tlgK~Lgg-Gy~PlsAvl~s 704 (817)
...|++ .+.|.+|| | ..+|++++.
T Consensus 199 ~gaDivv~S~tK~lgg~g-~~~Gg~v~~ 225 (431)
T PRK08248 199 HGADIVVHSATKFIGGHG-TSIGGVIVD 225 (431)
T ss_pred cCCCEEEEcCccccCCCC-CceEEEEEe
Confidence 347887 46799987 5 456665553
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.3e-05 Score=88.11 Aligned_cols=182 Identities=13% Similarity=0.054 Sum_probs=97.6
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc-hhhhcCCCCcee---eccccc-C
Q 003472 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLL-T 692 (817)
Q Consensus 618 ~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~-a~e~~gv~PDiv---tlgK~L-g 692 (817)
...+.+++-| +.-.|.+. +.+-+++|.++|++||+++|+||+...|--.++.+ ....++-...++ +|||.+ .
T Consensus 169 ~~~~v~l~~P--~NPtG~~~-s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~ 245 (409)
T PLN02656 169 NTVALVIINP--GNPCGNVY-SYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIV 245 (409)
T ss_pred CceEEEEECC--CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccC
Confidence 3456777777 34445554 67889999999999999999999997763223221 111111111233 799994 4
Q ss_pred CCCCcceEEEec--------hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLAT--------NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWD 764 (817)
Q Consensus 693 gGy~PlsAvl~s--------~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~ 764 (817)
.| +=+|.+++. +++.+.+... .....+.+.++.+++.++|+-- .++..++. .+.+.+. +
T Consensus 246 pG-lRiG~~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~s~~~q~a~~~~l~~~-~~~~~~~~---~~~~~~~-r 312 (409)
T PLN02656 246 PG-WRLGWFVTTDPSGSFRDPKIVERIKKY-------FDILGGPATFIQAAVPTILEQT-DESFFKKT---INILKQS-S 312 (409)
T ss_pred cc-eeEEEEEEeCcccccccHHHHHHHHHH-------HhhhcCCCHHHHHHHHHHHhcC-cHHHHHHH---HHHHHHH-H
Confidence 57 788889883 4676666321 1111234567777776666421 11122222 2223222 2
Q ss_pred HHHHHHHHcCCCcc-eEEee-eeEEEEEEecCCCCCCc-chHHHHHHHHHHcCCC
Q 003472 765 LELIQQISSHRTVQ-RVVAL-GTLCAIELQAAGCNAGY-CLIELFLYNFLTTGMH 816 (817)
Q Consensus 765 ~~l~~~l~~~p~V~-~VrG~-Glm~gIel~~~~~~~~~-~~~~~~~~~~l~~Gv~ 816 (817)
+.+.+.+++.+.+. .++.. |+++-+++.... ..+. +....+...+.++||+
T Consensus 313 ~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~-~~~~~~~~~~~~~~l~~~gV~ 366 (409)
T PLN02656 313 DICCDRIKEIPCITCPHKPEGSMAVMVKLNLSL-LEDISDDIDFCFKLAREESVI 366 (409)
T ss_pred HHHHHHHhhCCCCcCCcCCCeEEEEEEecchhh-cCCCCCHHHHHHHHHHhCCEE
Confidence 23445555555432 12333 577777774321 0011 1223344566677863
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=6e-06 Score=93.11 Aligned_cols=275 Identities=14% Similarity=0.106 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCC
Q 003472 420 ELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKD 499 (817)
Q Consensus 420 ~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~ 499 (817)
+-.+++.+.+..... ....+...+++++|++.++ .+++++++||++|...++..+. . ..
T Consensus 12 ~~~~~~~~~l~~~~~----~g~~~~~~~~e~~la~~~g---~~~~v~~~sgt~al~~~l~~~~---~-~~---------- 70 (375)
T PRK11706 12 TELDYIQQAMSSGKL----CGDGGFTRRCQQWLEQRFG---SAKVLLTPSCTAALEMAALLLD---I-QP---------- 70 (375)
T ss_pred HHHHHHHHHHHcCCc----cCCCHHHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHhC---C-CC----------
Confidence 335666666654322 1234667889999999887 4689999999999998887651 0 11
Q ss_pred ccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecC-Cchhhhcccccccc
Q 003472 500 TTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDI 578 (817)
Q Consensus 500 ~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~-P~~~~~~~~~~~d~ 578 (817)
...||.-.-+|.+ +..++...|... ..++. ++.+
T Consensus 71 ------Gd~Viv~~~t~~~-~~~~~~~~G~~~----------------------------v~~d~d~~~~---------- 105 (375)
T PRK11706 71 ------GDEVIMPSYTFVS-TANAFVLRGAKI----------------------------VFVDIRPDTM---------- 105 (375)
T ss_pred ------CCEEEECCCCcHH-HHHHHHHcCCEE----------------------------EEEecCCCcC----------
Confidence 1356666666554 333333332210 00000 0000
Q ss_pred cccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEE
Q 003472 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658 (817)
Q Consensus 579 ~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI 658 (817)
..| .+.+++.+.+ ++.+|++ + . ..|.... +++|.++|+++|+++|
T Consensus 106 -~~d------------------~~~le~~i~~--------~tk~i~~--~-~-~~G~~~~----~~~i~~la~~~~i~vI 150 (375)
T PRK11706 106 -NID------------------ETLIEAAITP--------KTRAIVP--V-H-YAGVACE----MDTIMALAKKHNLFVV 150 (375)
T ss_pred -CcC------------------HHHHHHhcCC--------CCeEEEE--e-C-CCCCccC----HHHHHHHHHHcCCEEE
Confidence 011 2456665541 3445552 2 2 2354443 7899999999999999
Q ss_pred EeeeeeccccccccchhhhcCCCCceeecc----cccCCCCCcceEEEechHHHhhhc---CCC--cc----------ce
Q 003472 659 FDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLATNAVFDSFV---GDS--KL----------KA 719 (817)
Q Consensus 659 ~DEV~TGfGRtG~~~a~e~~gv~PDivtlg----K~LggGy~PlsAvl~s~~i~d~~~---~~~--~~----------~~ 719 (817)
.|++|+ +|..-.. ...|---|+.++| |.++.|- =.+.+..++++++.+. ... +. ..
T Consensus 151 eD~a~a-~g~~~~~---~~~g~~~~~~~~Sf~~~K~l~~g~-gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 225 (375)
T PRK11706 151 EDAAQG-VMSTYKG---RALGTIGHIGCFSFHETKNYTAGE-GGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTW 225 (375)
T ss_pred EECccc-cccccCC---eeeecCcCEEEEeCCCCccccccC-CeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCccee
Confidence 999994 5542110 1112224888888 9996441 1223344566665332 110 00 00
Q ss_pred eecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC--------C-cceEEeeeeEEEEE
Q 003472 720 LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR--------T-VQRVVALGTLCAIE 790 (817)
Q Consensus 720 ~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p--------~-V~~VrG~Glm~gIe 790 (817)
...|.++--+.+.+|.+++.|+.+++ ..++.+...+++.+ .+++.+ . ..+......++.+.
T Consensus 226 ~~~g~~~~~~~~~aa~~~~ql~~l~~------~~~~R~~~~~~~~~----~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (375)
T PRK11706 226 VDIGSSYLPSELQAAYLWAQLEAADR------INQRRLALWQRYYD----ALAPLAEAGRIELPSIPDDCKHNAHMFYIK 295 (375)
T ss_pred eecccccCcCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH----HhcCCCcCCeeecCCCCCCCceeeEEEEEE
Confidence 11245555678889999898888743 22222233332222 233322 1 11122223344455
Q ss_pred EecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 791 LQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 791 l~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+. .....+...+.++||.
T Consensus 296 ~~~~------~~r~~l~~~L~~~gI~ 315 (375)
T PRK11706 296 LRDL------EDRSALINFLKEAGIM 315 (375)
T ss_pred ECCc------CCHHHHHHHHHHCCCC
Confidence 5332 3567788888889985
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.2e-06 Score=97.08 Aligned_cols=235 Identities=10% Similarity=0.061 Sum_probs=135.9
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.+ .+.+++++||++|+..++.... +. ...|++.+.+|.+.
T Consensus 50 ~~npt~~~Le~~lA~leg---~e~ivvt~gg~~Ai~~~l~all-----~~----------------Gd~Il~~~~~y~~~ 105 (388)
T PRK08861 50 SGNPNRGLLEQTLSELES---GKGAVVTNCGTSALNLWVSALL-----GP----------------DDLIVAPHDCYGGT 105 (388)
T ss_pred CCCchHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHHc-----CC----------------CCEEEEcCCchHHH
Confidence 456778899999999987 3789999999999999987652 11 12566666666542
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
...+..... +. ++.....+ ..|
T Consensus 106 -~~~~~~~~~---~~-----------------------gi~v~~vd--------------~~d----------------- 127 (388)
T PRK08861 106 -YRLFNTRAN---KG-----------------------DFKVQFVD--------------QSD----------------- 127 (388)
T ss_pred -HHHHHHHHh---cC-----------------------CeEEEEEC--------------CCC-----------------
Confidence 211100000 00 00000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee-ccccccccchhhhc
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLL 678 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-GfGRtG~~~a~e~~ 678 (817)
.+.+++.+. ++..+|++|-. ..-.|.+.+ +++|.++|+++|+++|+||++. |++. .-.
T Consensus 128 -~e~l~~~i~--------~~tklV~lesP-~NPtG~v~d----l~~I~~la~~~gi~vIvDea~~~~~~~-------~pl 186 (388)
T PRK08861 128 -AAALDAALA--------KKPKLILLETP-SNPLVRVVD----IAELCQKAKAVGALVAVDNTFLTPVLQ-------KPL 186 (388)
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCccccccC-------CCc
Confidence 134555553 24568888865 566677776 7899999999999999999984 2211 112
Q ss_pred CCCCcee--ecccccCCC-CCcceEEEec-hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHH
Q 003472 679 GCVPDIA--CYGKLLTGG-VIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (817)
Q Consensus 679 gv~PDiv--tlgK~LggG-y~PlsAvl~s-~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~ 754 (817)
.+-.|++ .+.|-++|. =+-.|+++++ +++++.+..- ........+|..|...+..|+-+.- ..++..+
T Consensus 187 ~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~------~~~~G~~~~p~~a~l~~rgl~Tl~l--R~~~~~~ 258 (388)
T PRK08861 187 ELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWW------GNCIGATGTPFDSYMTLRGIRTLGA--RMRVHEE 258 (388)
T ss_pred ccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHH------HhccCCCCChHHHHHHHhcCCCHHH--HHHHHHH
Confidence 3346887 567888862 1234555553 4555544210 0111233467777766655555421 1244455
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcceE------------------EeeeeEEEEEEec
Q 003472 755 ERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (817)
Q Consensus 755 ~~~~lg~~l~~~l~~~l~~~p~V~~V------------------rG~Glm~gIel~~ 793 (817)
++..+.++ +++||.|..| .|.|.|+.|++..
T Consensus 259 ~a~~~a~~--------L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~ 307 (388)
T PRK08861 259 SAQQILAY--------LQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAG 307 (388)
T ss_pred HHHHHHHH--------HHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCC
Confidence 55555443 3455544333 4788899999963
|
|
| >TIGR01969 minD_arch cell division ATPase MinD, archaeal | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.5e-06 Score=90.09 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=72.8
Q ss_pred ChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHH
Q 003472 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (817)
Q Consensus 193 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (817)
..+.+.+.+..+.+. +|+|||.+.+|+.. .+...... --.||+|+.....++..+....+
T Consensus 94 ~~~~l~~~l~~l~~~-------------yD~VIiD~p~~~~~------~~~~~l~~-ad~vliv~~~~~~s~~~~~~~~~ 153 (251)
T TIGR01969 94 DPDKLEDVLKEIIDD-------------TDFLLIDAPAGLER------DAVTALAA-ADELLLVVNPEISSITDALKTKI 153 (251)
T ss_pred CHHHHHHHHHHHHhh-------------CCEEEEeCCCccCH------HHHHHHHh-CCeEEEEECCCCchHHHHHHHHH
Confidence 345666666665443 99999999876532 22222222 23589999999889988888888
Q ss_pred HHHhCCCcEEEEEEccCCCC----CHHHHHHhhcCCCcEEe-cCCCCCCC
Q 003472 273 SLKLRGYDVVAVVFEDHGLV----NEVPLMSYLRNRVPVLV-LPPLPQDS 317 (817)
Q Consensus 273 ~l~~~~~~v~gvi~n~~~~~----~~~~l~~~~~~~~pvlg-iP~~~~~~ 317 (817)
.++..+.++.|+|+|++... ..+.+++.+ ++|+++ ||+.+...
T Consensus 154 ~~~~~~~~~~~vv~N~~~~~~~~~~~~~l~~~~--~~~~l~~Ip~~~~~~ 201 (251)
T TIGR01969 154 VAEKLGTAILGVVLNRVTRDKTELGREEIETIL--EVPVLGVVPEDPEVR 201 (251)
T ss_pred HHHhcCCceEEEEEECCCchhhhhHHHHHHHhh--CCcEEEEecCCHhHH
Confidence 88877888999999998432 134566666 899999 99877643
|
This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown. |
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1e-05 Score=90.29 Aligned_cols=275 Identities=12% Similarity=0.108 Sum_probs=150.4
Q ss_pred CHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 003472 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~ 497 (817)
.|.+.+|+.+.+...... .+..+...+|.+.++++.+-. -+.++++++.++|+..+++... +.
T Consensus 37 p~~~~~a~~~~~~~~~~~---~y~~~~~~~lr~~ia~~~~~~-~~~i~it~G~~~~l~~~~~~l~-----~~-------- 99 (351)
T PRK14807 37 PEEVIKNIQEIVKSSQVN---IYPDPTAEKLREELARYCSVV-PTNIFVGNGSDEIIHLIMLAFI-----NK-------- 99 (351)
T ss_pred CHHHHHHHHHHhhcCccc---CCCCccHHHHHHHHHHHhCCC-cccEEEecCHHHHHHHHHHHhc-----CC--------
Confidence 689999988877532211 122233467778888876532 2578888888888887776551 11
Q ss_pred CCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhccccccc
Q 003472 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (817)
Q Consensus 498 ~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d 577 (817)
...|+..+-+|.+.. ......|... ..++....
T Consensus 100 --------gd~Vlv~~p~y~~~~-~~~~~~g~~~----------------------------~~v~~~~~---------- 132 (351)
T PRK14807 100 --------GDVVIYPHPSFAMYS-VYSKIAGAVE----------------------------IPVKLKED---------- 132 (351)
T ss_pred --------CCEEEEeCCChHHHH-HHHHHcCCeE----------------------------EEeecCCC----------
Confidence 136777777776422 1111111110 01110000
Q ss_pred ccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcE
Q 003472 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (817)
Q Consensus 578 ~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilL 657 (817)
+. . | .+.+++.+.. .++.+|++... +.-.|...+ .+++.++|++++.++
T Consensus 133 --~~-~--------d--------~~~l~~~~~~-------~~~k~v~l~~p-~NPtG~~~~----~~~l~~l~~~~~~~~ 181 (351)
T PRK14807 133 --YT-Y--------D--------VGSFIKVIEK-------YQPKLVFLCNP-NNPTGSVIE----REDIIKIIEKSRGIV 181 (351)
T ss_pred --CC-C--------C--------HHHHHHHhhc-------cCCCEEEEeCC-CCCCCCCCC----HHHHHHHHHhCCCEE
Confidence 00 0 0 1445555542 23445554443 566677776 677888888888899
Q ss_pred EEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHH
Q 003472 658 IFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGC 733 (817)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~ 733 (817)
|+||++..|. +.... ...+-.+.++ +|+|.+| .| +-+|.+++++++++.+.... ..+.-++++.
T Consensus 182 ivDe~y~~~~--~~~~~-~~~~~~~~vi~~~S~SK~~~~~G-lRiG~~v~~~~~~~~~~~~~--------~~~~~~~~~q 249 (351)
T PRK14807 182 VVDEAYFEFY--GNTIV-DVINEFENLIVLRTLSKAFGLAG-LRVGYAVANENILKYLNLVK--------SPYNINSLSQ 249 (351)
T ss_pred EEeCcchhhc--ccchH-HHhhhCCCEEEEecchHhcccch-hceeeeecCHHHHHHHHHcc--------CCCCcCHHHH
Confidence 9999997662 33111 1111123333 7899998 78 78999999999999885321 1234466766
Q ss_pred HHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHc
Q 003472 734 AAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTT 813 (817)
Q Consensus 734 AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~ 813 (817)
.++.+.|+ +. ..++..+.....++ .+.+.+++.+.+.-....|.++-+.+.+ ...+...++++
T Consensus 250 ~~~~~~l~---~~-~~~~~~~~~~~~r~----~l~~~l~~~~g~~~~~~~~~~~~i~~~~---------~~~~~~~l~~~ 312 (351)
T PRK14807 250 VIALKVLR---TG-VLKERVNYILNERE----RLIKELSKIPGIKVYPSKTNFILVKFKD---------ADYVYQGLLER 312 (351)
T ss_pred HHHHHHHh---HH-HHHHHHHHHHHHHH----HHHHHHHhCCCcEECcCCccEEEEEcCC---------HHHHHHHHHHC
Confidence 66666654 21 11222222222222 2334444444332223346665566642 25577778888
Q ss_pred CCC
Q 003472 814 GMH 816 (817)
Q Consensus 814 Gv~ 816 (817)
||.
T Consensus 313 gV~ 315 (351)
T PRK14807 313 GIL 315 (351)
T ss_pred CEE
Confidence 873
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.8e-06 Score=91.39 Aligned_cols=68 Identities=12% Similarity=-0.072 Sum_probs=41.6
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC-CCcee--ecccccCCC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIA--CYGKLLTGG 694 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv-~PDiv--tlgK~LggG 694 (817)
..++..| ....|.+.+ +++|.++|+++|+++++|+++.++.--.........++ ..|.+ ++.|.++++
T Consensus 151 ~v~~~~~--~~~tG~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p 221 (345)
T cd06450 151 MVVATAG--TTDTGAIDP----LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVP 221 (345)
T ss_pred EEEEecc--cCCCCCCCC----HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCC
Confidence 3444555 345676655 89999999999999999999964421111100001121 35754 678977665
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.3e-06 Score=93.82 Aligned_cols=150 Identities=15% Similarity=0.095 Sum_probs=93.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHH--HhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE--CQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~L--c~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
+.+++.+++ ....++.+|++--. ....|.+.+ ++++.++ |+++|+++|+|++|+ +|.. -...+ .
T Consensus 124 ~~l~~~l~~----~~~~~~k~v~~~~~-~~~tG~~~~----~~~i~~l~~~~~~g~~~vvD~v~s-~g~~--~id~~--~ 189 (401)
T PLN02409 124 DILKSKLRQ----DTNHKIKAVCVVHN-ETSTGVTND----LAGVRKLLDCAQHPALLLVDGVSS-IGAL--DFRMD--E 189 (401)
T ss_pred HHHHHHHhh----CcCCCccEEEEEee-cccccccCC----HHHHHHHHhhhccCcEEEEEcccc-cCCc--ccccc--c
Confidence 456666652 00124556666443 445688877 8888888 999999999999995 4321 11112 2
Q ss_pred CCCcee--ecccccCCCCCcceEEEechHHHhhhcCCCccceeec----------cc---CCCCCHHHHHHHHHHHHHhc
Q 003472 680 CVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLH----------GH---SYSAHALGCAAAAKSIKWFK 744 (817)
Q Consensus 680 v~PDiv--tlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h----------~~---T~~gnPla~AAAlA~L~~l~ 744 (817)
...|++ ...|.+++. .=+|.++++++..+.+..... .++.. .. .++.+-....+..++|+++.
T Consensus 190 ~~~D~~~~s~~K~l~~P-~G~G~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~ 267 (401)
T PLN02409 190 WGVDVALTGSQKALSLP-TGLGIVCASPKALEASKTAKS-PRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIF 267 (401)
T ss_pred cCccEEEEcCccccCcC-CCcceeEECHHHHHHHhcCCC-CCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHH
Confidence 345776 458988764 237888999998877643211 01111 11 23555667888889999986
Q ss_pred CcCchhcHHHHHHHHHHHHHHHHH
Q 003472 745 DPQTNHNIIPERRILRELWDLELI 768 (817)
Q Consensus 745 ~~~l~~~l~~~~~~lg~~l~~~l~ 768 (817)
+.+ .+++.++.+.+.+++.+.+.
T Consensus 268 ~~G-~e~i~~~~~~l~~~l~~~L~ 290 (401)
T PLN02409 268 EEG-LENVIARHARLGEATRLAVE 290 (401)
T ss_pred Hhh-HHHHHHHHHHHHHHHHHHHH
Confidence 543 35666777777777666553
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.4e-05 Score=89.34 Aligned_cols=160 Identities=16% Similarity=0.240 Sum_probs=98.0
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCc---eeecccccC-CCCCc
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD---IACYGKLLT-GGVIP 697 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PD---ivtlgK~Lg-gGy~P 697 (817)
.++..| +.-.|.+. +.+-+++|.++|++ ++++|.||++..|...+... ....-.+. +-+|||.+| .| +-
T Consensus 158 i~l~~p--~NPTG~~~-s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~~~--~~~~~~~~vi~~~SfSK~~~~~G-lR 230 (357)
T PRK14809 158 VYLTSP--HNPTGSEI-PLDEVEALAERTDE-ETLVVVDEAYGEFAERPSAV--ALVEERDDVAVLRTFSKAYGLAG-LR 230 (357)
T ss_pred EEEeCC--CCCCCcCC-CHHHHHHHHHhCcc-CcEEEEechhhhccCCchhH--HHHhhCCCEEEEecchhHhcCcc-hh
Confidence 445555 56667776 55667777788865 78999999998774333211 11111123 338999998 68 79
Q ss_pred ceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 003472 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (817)
Q Consensus 698 lsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V 777 (817)
+|.+++++++++.+.. ...+++.+++++.++.++|+ +++..++..+..+...+ .+.+.++.+.
T Consensus 231 iG~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~----~l~~~L~~~~-- 293 (357)
T PRK14809 231 LGYAVVPEEWADAYAR--------VNTPFAASELACRAGLAALD---DDEHVERTVETARWARE----YIREELDAPT-- 293 (357)
T ss_pred heeeecCHHHHHHHHH--------hCCCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHH----HHHHHhcCcc--
Confidence 9999999999888753 12467778888888877763 33333333333333333 2333443321
Q ss_pred ceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 778 QRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 778 ~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
....|.++.+++.+ ...|...+.++||.
T Consensus 294 --~~~~g~f~~~~~~~---------~~~~~~~l~~~gv~ 321 (357)
T PRK14809 294 --WESAGNFVLAEVGD---------ASAVAEAAQERGVI 321 (357)
T ss_pred --CCCCCCEEEEECCC---------HHHHHHHHHHCCEE
Confidence 23567788777632 24566667777863
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-05 Score=90.32 Aligned_cols=288 Identities=14% Similarity=0.080 Sum_probs=158.4
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alk 479 (817)
.++|+..+ ...+|- +|.+.+|+.+.+.....+ ..+...+|-+.+++..+-. -+.+++++++++|...++.
T Consensus 44 ~~i~l~~~--~~~~~~--~~~~~~a~~~~~~~~~~Y-----~~~~~~~Lr~aia~~~~v~-~e~I~it~Gs~~ai~~~~~ 113 (370)
T PRK09105 44 GAVFLNAN--ECPLGP--SPAARDAAARSAALSGRY-----DLELEDDLRTLFAAQEGLP-ADHVMAYAGSSEPLNYAVL 113 (370)
T ss_pred CcEEecCC--CCCCCC--CHHHHHHHHHHHHHhcCC-----CCchHHHHHHHHHHHhCcC-hhhEEEcCChHHHHHHHHH
Confidence 55665543 223442 689999998877543322 1122556777777776533 4679999999999998887
Q ss_pred HHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcc
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (817)
... . . ..+|+..+-+|.+... .....|.. +
T Consensus 114 ~l~----~-~----------------gd~Vli~~P~y~~~~~-~~~~~g~~----------------------------~ 143 (370)
T PRK09105 114 AFT----S-P----------------TAGLVTADPTYEAGWR-AADAQGAP----------------------------V 143 (370)
T ss_pred HHc----C-C----------------CCEEEEeCCChHHHHH-HHHHcCCe----------------------------E
Confidence 651 1 1 1367777766655322 11111110 0
Q ss_pred eeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp 639 (817)
..++....+ -.| .+.+++.. ......++..| +.-.|.+. +
T Consensus 144 ~~v~~~~~~-----------~~d------------------~~~l~~~~--------~~~~~v~l~nP--~NPTG~~~-~ 183 (370)
T PRK09105 144 AKVPLRADG-----------AHD------------------VKAMLAAD--------PNAGLIYICNP--NNPTGTVT-P 183 (370)
T ss_pred EEecCCCCC-----------CCC------------------HHHHHhcC--------CCCCEEEEeCC--CCCCCcCc-C
Confidence 011110000 000 12233221 12234566777 45567765 6
Q ss_pred HHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCCcceEEEechHHHhhhcCCC
Q 003472 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDS 715 (817)
Q Consensus 640 ~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~~ 715 (817)
.+.++++.+.|+ +|+++|+||++..|+. + ....+..+..++++ +|||.+| .| +-+|.+++++++++.+..
T Consensus 184 ~~~l~~l~~~~~-~~~~lIvDEaY~~f~~-~-~s~~~~~~~~~~vi~~~SfSK~~g~~G-lRiG~~v~~~~~i~~l~~-- 257 (370)
T PRK09105 184 RADIEWLLANKP-AGSVLLVDEAYIHFSD-A-PSVVDLVAQRKDLIVLRTFSKLYGMAG-MRLGLAAARPDLLAKLAR-- 257 (370)
T ss_pred HHHHHHHHHhCC-CCcEEEEECchHHhcc-C-cchHHHHhhCCCEEEEecccHhhcCCc-cceeeeecCHHHHHHHHh--
Confidence 667777777764 5999999999976643 1 11122223345654 7899998 68 789999999999888742
Q ss_pred ccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCC
Q 003472 716 KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795 (817)
Q Consensus 716 ~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~ 795 (817)
. .++..+..+.+++.++|+ +++..+...+..+...+ .+.+.++++.. .-+...|.++.+++..
T Consensus 258 ------~-~~~~~~~~~~~aa~~~L~---~~~~~~~~~~~~~~~r~----~l~~~L~~~g~-~~~~~~~~f~~~~~~~-- 320 (370)
T PRK09105 258 ------F-GHNPLPVPAAAAGLASLR---DPKLVPQRRAENAAVRE----DTIAWLKKKGY-KCTPSQANCFMVDVKR-- 320 (370)
T ss_pred ------c-CCCCcCHHHHHHHHHHHh---CHHHHHHHHHHHHHHHH----HHHHHHHHCCC-CcCCCCCcEEEEeCCC--
Confidence 1 233455566666666553 33333333333333333 33444444432 1123445555565531
Q ss_pred CCCCcchHHHHHHHHHHcCCC
Q 003472 796 CNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 796 ~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
....+...++++||.
T Consensus 321 ------~~~~l~~~L~~~gI~ 335 (370)
T PRK09105 321 ------PAKAVADAMAKQGVF 335 (370)
T ss_pred ------CHHHHHHHHHHCCcE
Confidence 225577777788874
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.5e-05 Score=92.19 Aligned_cols=221 Identities=15% Similarity=0.158 Sum_probs=125.0
Q ss_pred CHHHHHHHHHHHHhccccC--C-CCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhcccccccc
Q 003472 418 QIELARDMGYTAARFGHVM--F-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~~~~--~-~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~ 494 (817)
.+++.+|+.+.+..+.... . .+...+...++++.|+++.| .+.+++++||+.|+..++... ..
T Consensus 99 ~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~G---ae~a~vv~sgtaAl~l~l~~l------~~----- 164 (464)
T PRK04311 99 SEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTG---AEDALVVNNNAAAVLLALNAL------AA----- 164 (464)
T ss_pred CHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHh------CC-----
Confidence 6899999999887664211 1 01123455688999999988 367899999999998888543 11
Q ss_pred ccCCCccccccceEEEEEcC-Ccc-CCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcc
Q 003472 495 FLGKDTTEKCIELKVLALKG-SYH-GDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (817)
Q Consensus 495 ~~~~~~~~~~~r~~II~~~g-syH-G~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~ 572 (817)
...||+.++ .|| |.+. .+.. .. .. .|+..+..+
T Consensus 165 -----------GdeVIvs~~e~~~~ggs~---~i~~--~~---------~~-------------~G~~l~~v~------- 199 (464)
T PRK04311 165 -----------GKEVIVSRGELVEIGGAF---RIPD--VM---------RQ-------------AGARLVEVG------- 199 (464)
T ss_pred -----------CCEEEEcchhhhhcCcch---hhHH--HH---------HH-------------CCcEEEEEC-------
Confidence 125666655 343 3211 1100 00 00 000000000
Q ss_pred cccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc--CCC--cccCCHHHHHHHHH
Q 003472 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA--AGG--MHMVDPLFQRILVK 648 (817)
Q Consensus 573 ~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg--~gG--~~~pp~~yl~~Lr~ 648 (817)
+.+. .. .+.+++.+. ++.++|+++-. .. .-| ..++ +++|.+
T Consensus 200 -------~~~~----------t~-----~~dle~aI~--------~~TklV~~vh~-sN~~i~G~~~~~d----l~eI~~ 244 (464)
T PRK04311 200 -------TTNR----------TH-----LRDYEQAIN--------ENTALLLKVHT-SNYRIEGFTKEVS----LAELAA 244 (464)
T ss_pred -------CCCC----------CC-----HHHHHHhcC--------ccCeEEEEEcC-CCccccccCCcCC----HHHHHH
Confidence 1110 00 244555554 24567777764 22 123 3344 999999
Q ss_pred HHhhcCCcEEEeeeeeccccccc---c------chhhhcCCCCceeecc--cccCCCCCcceEEEechHHHhhhcCCCcc
Q 003472 649 ECQNRKIPVIFDEVFTGFWRLGV---E------TTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKL 717 (817)
Q Consensus 649 Lc~~~GilLI~DEV~TGfGRtG~---~------~a~e~~gv~PDivtlg--K~LggGy~PlsAvl~s~~i~d~~~~~~~~ 717 (817)
+|++||+++|+|.. .|-.|. + ...+......|++++| |.|||. . .|++++++++++.+....
T Consensus 245 lak~~gi~vivD~g---sG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp-~-~G~i~g~~~li~~l~~~~-- 317 (464)
T PRK04311 245 LGKEHGLPVVYDLG---SGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP-Q-AGIIVGKKELIARLKKHP-- 317 (464)
T ss_pred HHHHcCCeEEEECC---CcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCC-c-eEEEEEcHHHHHHHhhch--
Confidence 99999999999994 333332 1 1122223457999998 999876 2 677889999888765321
Q ss_pred ceeecccCCCCCHHHHHHHHHHHHHh
Q 003472 718 KALLHGHSYSAHALGCAAAAKSIKWF 743 (817)
Q Consensus 718 ~~~~h~~T~~gnPla~AAAlA~L~~l 743 (817)
..-++.-+-...++-.++|..+
T Consensus 318 ----~~r~lr~dk~~l~~l~~~l~~~ 339 (464)
T PRK04311 318 ----LKRALRVDKLTLAALEATLRLY 339 (464)
T ss_pred ----hHHHHhcchHHHHHHHHHHHHH
Confidence 1222233445555555666544
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.8e-05 Score=89.07 Aligned_cols=267 Identities=9% Similarity=-0.002 Sum_probs=146.6
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCC-------ChHHHHHHHHHHhhcCCCCcceEEEeCChHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-------YEPALECAELLLQGVGKGWASRAYFSDNGST 472 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~-------~~~~~eLae~L~~~~~~~~~~~v~f~~SGse 472 (817)
.|||..+ .|-- .+.|.+|+.+.+..+.... .... .+...++-+.|+++++...-+.++|++++++
T Consensus 34 iyLd~a~------~~~~-p~~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~ 105 (424)
T PLN02855 34 VYLDNAA------TSQK-PAAVLDALQDYYEEYNSNV-HRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATE 105 (424)
T ss_pred EEeeCcc------ccCC-CHHHHHHHHHHHHhcCCCC-CCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHH
Confidence 6788643 3555 7889999988776543211 0111 1224566778888877421257999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCc
Q 003472 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (817)
Q Consensus 473 A~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (817)
|+..+++..-.... + + ..+|+.....|++....-..+... .|.
T Consensus 106 al~~i~~~~~~~~~-~---------------~-gd~vl~~~~~~~s~~~~~~~~a~~--------------~g~------ 148 (424)
T PLN02855 106 AINLVAYTWGLANL-K---------------P-GDEVILSVAEHHSNIVPWQLVAQK--------------TGA------ 148 (424)
T ss_pred HHHHHHHHhhhhcC-C---------------C-cCEEEECCCccHHHHHHHHHHHHH--------------cCC------
Confidence 99888875300011 1 1 135776666555422111111000 000
Q ss_pred ccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003472 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (817)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~ 632 (817)
.+..++..... ..| .+.+++.+. .++..|++.-+ +..
T Consensus 149 -----~v~~v~~~~~~-----------~~~------------------~~~l~~~i~--------~~t~lv~i~~~-~n~ 185 (424)
T PLN02855 149 -----VLKFVGLTPDE-----------VLD------------------VEQLKELLS--------EKTKLVATHHV-SNV 185 (424)
T ss_pred -----EEEEEecCCCC-----------CcC------------------HHHHHHHhc--------cCceEEEEeCc-ccc
Confidence 00111110000 000 144555554 14456666665 677
Q ss_pred CCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCCCCCcceEEEechHHHhh
Q 003472 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDS 710 (817)
Q Consensus 633 gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~LggGy~PlsAvl~s~~i~d~ 710 (817)
-|.+.+ +++|.++|+++|+++|+|++| ++|..- .......+|++ .+.| +.|. .-+|.+.+++++.+.
T Consensus 186 tG~~~~----~~~I~~l~~~~g~~vivD~a~-~~g~~~----~~~~~~~~d~~~~s~~K-~~gp-~G~G~l~~~~~~~~~ 254 (424)
T PLN02855 186 LGSILP----VEDIVHWAHAVGAKVLVDACQ-SVPHMP----VDVQTLGADFLVASSHK-MCGP-TGIGFLWGKSDLLES 254 (424)
T ss_pred ccccCC----HHHHHHHHHHcCCEEEEEhhh-hcCCcC----CCchhcCCCEEEeeccc-ccCC-CccEEEEEchhhhhc
Confidence 788887 789999999999999999999 454321 11112347987 5689 4331 226888899988776
Q ss_pred hcCC---Cc--cceeec---------ccC-CCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHH
Q 003472 711 FVGD---SK--LKALLH---------GHS-YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLE 766 (817)
Q Consensus 711 ~~~~---~~--~~~~~h---------~~T-~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~ 766 (817)
+... .. ...+.. ... -+-|..+.++..++++.+.+.+. +++.++...+.+++.+.
T Consensus 255 ~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~-~~i~~~~~~l~~~l~~~ 324 (424)
T PLN02855 255 MPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGM-DRIHEYEVELGTYLYEK 324 (424)
T ss_pred CCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHH
Confidence 5311 00 000000 011 12456677777788888866433 55666666676655543
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=4e-06 Score=94.70 Aligned_cols=146 Identities=11% Similarity=0.066 Sum_probs=84.1
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCCCC-
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGV- 695 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~LggGy- 695 (817)
++.+|++|-. ..-.|.+.+ +++|.++|+++|+++|+||++.. +-.+.. .....|++ .++|.++|--
T Consensus 134 ~tklV~le~P-~NPtg~~~d----l~~I~~la~~~g~~lvvD~a~~~-~~~~~p-----~~~g~Divv~S~sK~l~G~~~ 202 (377)
T PRK07671 134 NTKAIYVETP-TNPLLKITD----IKKISTIAKEKGLLTIVDNTFMT-PYWQSP-----ISLGADIVLHSATKYLGGHSD 202 (377)
T ss_pred CCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCCc-cccCCh-----hhhCCeEEEecCcccccCCcc
Confidence 4568888865 454566554 99999999999999999999842 122222 22345876 5789998520
Q ss_pred CcceEEEe-chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 696 IPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 696 ~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
.-.|++++ ++++++.+... .....-..+|..|..++..++.+.. ..++..+++..+.+ .++++
T Consensus 203 ~~~G~~v~~~~~l~~~~~~~------~~~~g~~~~~~~a~l~~~~l~tl~~--R~~~~~~na~~la~--------~L~~~ 266 (377)
T PRK07671 203 VVAGLVVVNSPELAEDLHFV------QNSTGGILGPQDSWLLLRGLKTLGI--RMEEHETNSRAIAE--------FLNNH 266 (377)
T ss_pred ceeEEEEeCcHHHHHHHHHH------HHhhcCCCCHHHHHHHHcCcChHHH--HHHHHHHHHHHHHH--------HHHcC
Confidence 11223444 55666655321 0111123457777766655544422 22344455555444 33444
Q ss_pred CCcce------------------EEeeeeEEEEEE
Q 003472 775 RTVQR------------------VVALGTLCAIEL 791 (817)
Q Consensus 775 p~V~~------------------VrG~Glm~gIel 791 (817)
|.|.. -.|.|.|+.|++
T Consensus 267 ~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~ 301 (377)
T PRK07671 267 PAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDV 301 (377)
T ss_pred CCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEe
Confidence 43322 247789999999
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.1e-06 Score=94.47 Aligned_cols=123 Identities=11% Similarity=0.013 Sum_probs=72.1
Q ss_pred CCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeec--ccccCCCCCcceEEEechHHHh
Q 003472 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFD 709 (817)
Q Consensus 632 ~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~LggGy~PlsAvl~s~~i~d 709 (817)
.-|+..+ +++|.++|+++|+++++|++| ++|..+......... ..|++++ .|.|+|-. .|.+++++++.+
T Consensus 192 ~~g~~~d----i~~I~~i~~~~ga~l~vDaaq-~~G~i~~~~~~~~~~-~~D~l~~S~hK~l~GP~--Gg~l~~~~~~~~ 263 (452)
T PTZ00094 192 AYPRDID----YKRFREICDSVGAYLMADIAH-TSGLVAAGVLPSPFP-YADVVTTTTHKSLRGPR--SGLIFYRKKVKP 263 (452)
T ss_pred CCCCccC----HHHHHHHHHHcCCEEEEeccc-hhccccCCCCCCCCC-CCcEEEcCCccCCCCCC--ceEEEEecccch
Confidence 3456666 899999999999999999999 577765421111111 4798855 59887631 355666766544
Q ss_pred hhcCCCccceeecccCC--CCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHH
Q 003472 710 SFVGDSKLKALLHGHSY--SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLE 766 (817)
Q Consensus 710 ~~~~~~~~~~~~h~~T~--~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~ 766 (817)
.+..... ...+ .+| +.++..+++..++|+.+.+.+. +...++...+.++|.+.
T Consensus 264 ~l~~~~~--~~~~-p~~~G~~~~~~iaal~~al~~~~~~~~-~~~~~~i~~l~~~l~~~ 318 (452)
T PTZ00094 264 DIENKIN--EAVF-PGLQGGPHNHQIAAIAVQLKEVQSPEW-KEYAKQVLKNAKALAAA 318 (452)
T ss_pred HHHHhhc--cccC-CCCCCCchHHHHHHHHHHHHHHhChhH-HHHHHHHHHHHHHHHHH
Confidence 3321110 0011 112 4577888888899999965331 22333334444444333
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-05 Score=90.31 Aligned_cols=167 Identities=11% Similarity=0.125 Sum_probs=96.6
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCC
Q 003472 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGV 695 (817)
Q Consensus 620 iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy 695 (817)
+.+|++... ..--|.+.+ .+++.++++.. +++|+||++..|...+... ....-.+.++ +|+|.+| .|
T Consensus 176 ~~~v~l~~P-~NPTG~~~~----~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~--~~~~~~~~viv~~SfSK~~glaG- 246 (380)
T PLN03026 176 PKLLFLTSP-NNPDGSIIS----DDDLLKILELP-ILVVLDEAYIEFSTQESRM--KWVKKYDNLIVLRTFSKRAGLAG- 246 (380)
T ss_pred CcEEEEeCC-CCCCCCCCC----HHHHHHHHhcC-CEEEEECcchhhcCCcchH--HHHHhCCCEEEEecchHhhcCcc-
Confidence 345554443 566677775 55666666654 8999999997763222211 1111123332 8999998 78
Q ss_pred CcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 696 ~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
+-+|.+++++++++.+.... ..|.-+.++..++.++|+ +.+..+++.+.....++ .+.+.+++.+
T Consensus 247 lRiGy~~~~~~~i~~l~~~~--------~~~~~~~~~q~aa~~aL~---~~~~~~~~~~~~~~~r~----~l~~~L~~~~ 311 (380)
T PLN03026 247 LRVGYGAFPLSIIEYLWRAK--------QPYNVSVAAEVAACAALS---NPKYLEDVKNALVEERE----RLFGLLKEVP 311 (380)
T ss_pred ccceeeecCHHHHHHHHHhc--------CCCCCCHHHHHHHHHHhh---CHHHHHHHHHHHHHHHH----HHHHHHHHCC
Confidence 78888999999988774321 235566777777777763 22233333333333333 3344455554
Q ss_pred CcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 776 TVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 776 ~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+.-....|.++-+++.+. .....+...++++||.
T Consensus 312 ~~~~~p~~~~f~~~~~~~~------~~~~~~~~~l~~~gI~ 346 (380)
T PLN03026 312 FLEPYPSDANFILCRVTSG------RDAKKLKEDLAKMGVM 346 (380)
T ss_pred CCeECCCCCeEEEEECCCC------CCHHHHHHHHHHCCeE
Confidence 3321233466767766532 2345677888888874
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.1e-05 Score=85.66 Aligned_cols=167 Identities=14% Similarity=0.235 Sum_probs=100.1
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-chhhhcCCCCcee---ecccccC-CCCC
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA---CYGKLLT-GGVI 696 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a~e~~gv~PDiv---tlgK~Lg-gGy~ 696 (817)
.+++-| +.-.|... +.+-+++|.++|++||+++|+||+...|-..+.. -.....+-.+.++ +|||.+| .| +
T Consensus 145 v~~~~P--~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G-~ 220 (354)
T PRK06358 145 VFLCNP--NNPTGQLI-SKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPG-L 220 (354)
T ss_pred EEEeCC--CCCCCCcc-CHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcc-h
Confidence 356777 34456654 7888999999999999999999999777332321 1112222223443 7899999 88 7
Q ss_pred cceEEEec-hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 697 PLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 697 PlsAvl~s-~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
-+|.+++. +.+.+.+..- . ..+..+.++..++.++| ++++..++..+..+.-. +.+.+.+++++
T Consensus 221 RiG~lv~~~~~~~~~~~~~-------~-~~~~~~~~~q~~~~~~l---~~~~~~~~~~~~~~~~r----~~l~~~L~~~~ 285 (354)
T PRK06358 221 RLGYGLTSNKNLAEKLLQM-------R-EPWSINTFADLAGQTLL---DDKEYIKKTIQWIKEEK----DFLYNGLSEFK 285 (354)
T ss_pred hheeeecCCHHHHHHHHHh-------C-CCCcchHHHHHHHHHHh---ccHHHHHHHHHHHHHHH----HHHHHHHhcCC
Confidence 99989874 6777776431 1 24555666666666665 23222222222222222 23455566655
Q ss_pred CcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 776 TVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 776 ~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+.-....|.++-+.+.+. ..|...++++||+
T Consensus 286 ~~~~~~~~g~f~~~~~~~~---------~~~~~~l~~~gI~ 317 (354)
T PRK06358 286 GIKVYKPSVNFIFFKLEKP---------IDLRKELLKKGIL 317 (354)
T ss_pred CcEEcCCcceEEEEEcCch---------HHHHHHHHHCCeE
Confidence 4322234566666666421 5678888888874
|
|
| >TIGR01007 eps_fam capsular exopolysaccharide family | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.7e-06 Score=87.55 Aligned_cols=77 Identities=18% Similarity=0.067 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHH
Q 003472 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (817)
Q Consensus 195 ~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l 274 (817)
+.+.+.++.+.+. +|+|||++.. +........+++.. -.+|+|+..+..+++++..+++.+
T Consensus 115 ~~l~~~l~~l~~~-------------yD~ViiD~pp-----~~~~~~~~~~~~~~-D~vilV~~~~~~~~~~~~~~~~~l 175 (204)
T TIGR01007 115 SNFKTLIETLRKY-------------FDYIIIDTPP-----IGTVTDAAIIARAC-DASILVTDAGEIKKRDVQKAKEQL 175 (204)
T ss_pred HHHHHHHHHHHhc-------------CCEEEEeCCC-----ccccchHHHHHHhC-CeEEEEEECCCCCHHHHHHHHHHH
Confidence 4455556655544 9999999953 21111222344433 478999999999999999999999
Q ss_pred HhCCCcEEEEEEccCC
Q 003472 275 KLRGYDVVAVVFEDHG 290 (817)
Q Consensus 275 ~~~~~~v~gvi~n~~~ 290 (817)
+..+.++.|+|+|++.
T Consensus 176 ~~~~~~~~gvVlN~~~ 191 (204)
T TIGR01007 176 EQTGSNFLGVVLNKVD 191 (204)
T ss_pred HhCCCCEEEEEEeCcc
Confidence 9999999999999973
|
This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. |
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.8e-05 Score=88.14 Aligned_cols=175 Identities=13% Similarity=0.055 Sum_probs=96.3
Q ss_pred cEEEEEEc-cccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc----cchhhh-cCCCCceeecccccC
Q 003472 619 CIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTADL-LGCVPDIACYGKLLT 692 (817)
Q Consensus 619 ~iAAvIvE-PV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~----~~a~e~-~gv~PDivtlgK~Lg 692 (817)
++.+|++- | +.-.|.+. +.+-+++|.++|++||+++|+||+..-|-..|. ...... .+..-.+-+|+|.+|
T Consensus 170 ~~k~i~l~~P--~NPtG~~~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~ 246 (394)
T PRK05942 170 QAKILYFNYP--SNPTTATA-PREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYN 246 (394)
T ss_pred cceEEEEcCC--CCCCCCcC-CHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccC
Confidence 34455544 6 45556654 788899999999999999999999865522222 111110 111122347999996
Q ss_pred -CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHH
Q 003472 693 -GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQI 771 (817)
Q Consensus 693 -gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l 771 (817)
.| +=+|.+++++++++.+.... ....++.+.++..++.++|+.. +...+++.+.-+...+. +.+.+
T Consensus 247 ~~G-lRiG~i~~~~~l~~~l~~~~------~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~----~~~~L 313 (394)
T PRK05942 247 MAG-WRVGFVVGNRHIIQGLRTLK------TNLDYGIFSALQKAAETALQLP--DSYLQQVQERYRTRRDF----LIQGL 313 (394)
T ss_pred Chh-hheeeeecCHHHHHHHHHHH------hhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHH----HHHHH
Confidence 57 67888999999998885311 1123445556666666666432 11222333333333332 33334
Q ss_pred HcCCCcceEEe-eeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCCC
Q 003472 772 SSHRTVQRVVA-LGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 772 ~~~p~V~~VrG-~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv~ 816 (817)
++++. .-+.. -|+++-+++... .....+...++ ++||+
T Consensus 314 ~~~~~-~~~~~~~~~f~~~~~~~~------~~~~~~~~~~l~~~gV~ 353 (394)
T PRK05942 314 GELGW-NIPPTKATMYLWVPCPVG------MGSTDFALNVLQKTGVV 353 (394)
T ss_pred HHCCC-eecCCCeeeEEEEECCCC------CCHHHHHHHHHHHCCEE
Confidence 44432 11222 455666776532 11233445444 67763
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.8e-05 Score=88.28 Aligned_cols=180 Identities=11% Similarity=0.079 Sum_probs=92.7
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---eccccc-CCCCC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLL-TGGVI 696 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~L-ggGy~ 696 (817)
+.+++-| +.--|... +.+-+++|.++|+++|+++|.||+...+--.+..-....+.-...++ +|+|.+ ..| +
T Consensus 169 ~v~l~~p--~NPtG~~~-~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G-l 244 (398)
T PRK08363 169 AIAVINP--NNPTGALY-EKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATG-W 244 (398)
T ss_pred EEEEECC--CCCCCcCc-CHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCcc-c
Confidence 3445555 34456655 68889999999999999999999986542122221111121122233 889995 457 6
Q ss_pred cceEEEe--chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 697 PLAATLA--TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 697 PlsAvl~--s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
=+|.+++ .+++.+.+...- .. ....+++.+.++-.++.++|+- .++..+++.+..+...+ .+.+.++++
T Consensus 245 RiG~~~~~~~~~~~~~l~~~~--~~-~~~~~~~~s~~~q~~~~~~l~~--~~~~l~~~~~~~~~~~~----~l~~~L~~~ 315 (398)
T PRK08363 245 RLGYIYFVDPEGKLAEVREAI--DK-LARIRLCPNTPAQFAAIAGLTG--PMDYLEEYMKKLKERRD----YIYKRLNEI 315 (398)
T ss_pred eEEEEEEeCcHHHHHHHHHHH--HH-HhcccccCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHH----HHHHHHhcC
Confidence 7888887 565555442210 00 0112356677777777666642 12222233222222222 344455555
Q ss_pred CCcceEEeeeeEEE-EEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCA-IELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~g-Iel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
|.+.-.+..|.++. +.+.... ..+..+.....+.++||+
T Consensus 316 ~~~~~~~p~g~~~~~~~l~~~~---~~~~~~~~~~~l~~~gV~ 355 (398)
T PRK08363 316 PGISTTKPQGAFYIFPRIEEGP---WKDDKEFVLDVLHEAHVL 355 (398)
T ss_pred CCCEecCCCeEEEEEEEeccCC---CCCHHHHHHHHHHhCCEE
Confidence 54332234454444 4564310 001222233444677763
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.4e-06 Score=95.68 Aligned_cols=160 Identities=13% Similarity=0.118 Sum_probs=94.8
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC-CC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg-Gy 695 (817)
+..+|++|.. ..-.|.+. -+++|.++|+++|+++|+||+++. +. .+.-+..-.|++ ...|-|+| |=
T Consensus 146 ~TklV~lesp-sNPtg~v~----dl~~I~~la~~~g~~lvvD~t~a~----p~--~~~Pl~~GaDivv~S~tK~l~Gh~d 214 (394)
T PRK09028 146 NTKVLFLESP-GSITMEVQ----DVPTLSRIAHEHDIVVMLDNTWAS----PI--NSRPFEMGVDISIQAATKYIVGHSD 214 (394)
T ss_pred CceEEEEECC-CCCCCcHH----HHHHHHHHHHHcCCEEEEECCccc----cc--cCCccccCceEEEEeCCeEecCCCC
Confidence 4678999987 55555444 489999999999999999999952 21 122233456887 56898976 21
Q ss_pred CcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 696 ~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
+-.|+++.++++.+.+.... ...|. ..+|..|.-.+-.|+-+.- ..++..+++..+. +.+++||
T Consensus 215 ~~~G~~~~~~~~~~~l~~~~----~~~G~--~~~p~~a~l~~rgl~TL~l--R~~~~~~na~~la--------~~L~~~p 278 (394)
T PRK09028 215 VMLGTATANEKHWDQLREHS----YLMGQ--CTSPDDVYLAMRGLRTLGV--RLAQHEKNALKVA--------NWLATRP 278 (394)
T ss_pred EEEEEEECCHHHHHHHHHHH----HhcCC--CCCHHHHHHHHcccCcHHH--HHHHHHHHHHHHH--------HHHhcCC
Confidence 33455566666655443110 01121 3467766665555544421 1234444444443 3455677
Q ss_pred CcceE------------------EeeeeEEEEEEecCCCCCCcchHHHHHHH
Q 003472 776 TVQRV------------------VALGTLCAIELQAAGCNAGYCLIELFLYN 809 (817)
Q Consensus 776 ~V~~V------------------rG~Glm~gIel~~~~~~~~~~~~~~~~~~ 809 (817)
.|..| .|.|-|+.|++...+ .+....|+.+
T Consensus 279 ~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~----~~~~~~f~~~ 326 (394)
T PRK09028 279 EVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGD----PKAVTALVEG 326 (394)
T ss_pred CccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCC----HHHHHHHHHh
Confidence 66555 367889999996321 2344555544
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.1e-05 Score=85.92 Aligned_cols=87 Identities=13% Similarity=0.143 Sum_probs=59.8
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-chhhhcCCCCc-e--eecccccC-CCCC
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD-I--ACYGKLLT-GGVI 696 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a~e~~gv~PD-i--vtlgK~Lg-gGy~ 696 (817)
.+|.-| +.--|... +++-+++|.++|+++|+++|+||++..+-..+.. ...+..+.... + .+++|.+| -| +
T Consensus 165 i~i~~p--~NPtG~~~-s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pG-l 240 (387)
T PRK07683 165 VVLPYP--SNPTGVTL-SKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTG-W 240 (387)
T ss_pred EEEeCC--CCCCCcCC-CHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCcc-c
Confidence 344445 34456655 7888999999999999999999999765211221 11222122222 2 27899999 78 7
Q ss_pred cceEEEechHHHhhhc
Q 003472 697 PLAATLATNAVFDSFV 712 (817)
Q Consensus 697 PlsAvl~s~~i~d~~~ 712 (817)
=+|.+++++++++.+.
T Consensus 241 RiG~i~~~~~l~~~~~ 256 (387)
T PRK07683 241 RIGFLFAPSYLAKHIL 256 (387)
T ss_pred eeEEEEcCHHHHHHHH
Confidence 8999999999888875
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=98.47 E-value=3e-05 Score=87.42 Aligned_cols=173 Identities=13% Similarity=0.091 Sum_probs=95.0
Q ss_pred EEEEEEc-cccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc-hh-hhcCCC---CceeecccccC-
Q 003472 620 IGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TA-DLLGCV---PDIACYGKLLT- 692 (817)
Q Consensus 620 iAAvIvE-PV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~-a~-e~~gv~---PDivtlgK~Lg- 692 (817)
+.+|++- | +.-.|.+. +.+-+++|.++|++||+++|.||++..+-..+... .. ..-+.. -.+.+|||.+|
T Consensus 165 ~~~v~i~~P--~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~ 241 (383)
T TIGR03540 165 AKLMFINYP--NNPTGAVA-PLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNM 241 (383)
T ss_pred ceEEEEeCC--CCCcCccC-CHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCC
Confidence 4455554 6 45556665 88899999999999999999999997552222111 11 111111 22348999997
Q ss_pred CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
.| +=+|.+++++++++.+..- ....+.+.+.+..+++.++|+-. ++..+++.+..+...+ .+.+.++
T Consensus 242 ~G-lRiG~~i~~~~l~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~----~~~~~L~ 308 (383)
T TIGR03540 242 TG-WRIGMAVGNADLIAGLGKV------KTNVDSGVFQAIQYAAIAALNGP--QDVVKEIRKIYQRRRD----LLLEALK 308 (383)
T ss_pred cc-ceeeEEeCCHHHHHHHHHH------HHhcccCCChHHHHHHHHHHhCC--HHHHHHHHHHHHHHHH----HHHHHHH
Confidence 57 6788899999998877421 01112233445555555554321 1222222222222222 3444555
Q ss_pred cCCCcceEEe-eeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCC
Q 003472 773 SHRTVQRVVA-LGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGM 815 (817)
Q Consensus 773 ~~p~V~~VrG-~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv 815 (817)
++.+ .-+.. -|+++-+++.+. .....+...++ ++||
T Consensus 309 ~~~~-~~~~~~~~~~~~~~l~~~------~~~~~~~~~ll~~~gi 346 (383)
T TIGR03540 309 KIGI-DVEKPKATFYVWVPVPEG------YTSAEFAARLLEETGV 346 (383)
T ss_pred hCCC-EecCCCcceEEEEECCCC------CCHHHHHHHHHHHCCE
Confidence 5542 11122 366677777532 12355666665 4676
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.1e-06 Score=94.21 Aligned_cols=252 Identities=11% Similarity=0.034 Sum_probs=141.6
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++....|+++|+++-+. +..+++.||.+|+..++...+ +. ...||..+..|.+.
T Consensus 61 ~gnPt~~~Le~~la~le~~---~~~v~~sSG~aAi~~~l~all-----~~----------------GD~Vlv~~~~Y~~~ 116 (395)
T PRK05967 61 RGTPTTDALCKAIDALEGS---AGTILVPSGLAAVTVPFLGFL-----SP----------------GDHALIVDSVYYPT 116 (395)
T ss_pred CCChHHHHHHHHHHHHhCC---CCEEEECcHHHHHHHHHHHhc-----CC----------------CCEEEEccCCcHHH
Confidence 4578888999999987552 457788889999999886542 11 13678878888764
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
....-.+. . ..|.- +.|-+.+ +
T Consensus 117 ~~l~~~~l--~------------~~Gi~------------------------------v~~vd~~-------~------- 138 (395)
T PRK05967 117 RHFCDTML--K------------RLGVE------------------------------VEYYDPE-------I------- 138 (395)
T ss_pred HHHHHHHH--H------------hcCeE------------------------------EEEeCCC-------C-------
Confidence 32110110 0 00000 0011110 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.++ .+..+|++|.. ...-+ ...-+++|.++|+++|+++|+|+++... ..+.-..
T Consensus 139 -~e~l~~al~--------~~TklV~lesP-sNP~l----~v~dl~~I~~la~~~g~~vvVD~t~a~p------~~~~pl~ 198 (395)
T PRK05967 139 -GAGIAKLMR--------PNTKVVHTEAP-GSNTF----EMQDIPAIAEAAHRHGAIVMMDNTWATP------LYFRPLD 198 (395)
T ss_pred -HHHHHHhcC--------cCceEEEEECC-CCCCC----cHHHHHHHHHHHHHhCCEEEEECCccCc------eecChhH
Confidence 134555554 24678999965 34333 4445999999999999999999999532 1122233
Q ss_pred CCCcee--ecccccCC-CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHH
Q 003472 680 CVPDIA--CYGKLLTG-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (817)
Q Consensus 680 v~PDiv--tlgK~Lgg-Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~ 756 (817)
.-.|++ ...|-++| |=+-.|+++.++++.+.+.... ...|. ..+|..|...+..|+-+.- ..++..+++
T Consensus 199 ~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~----~~~G~--~~~p~da~l~~rgl~Tl~l--R~~~~~~na 270 (395)
T PRK05967 199 FGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAH----GTLGL--CAGPDDTYQILRGLRTMGI--RLEHHRKSA 270 (395)
T ss_pred cCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHH----HHcCC--CCCHHHHHHHHcCcccHHH--HHHHHHHHH
Confidence 346777 57899887 2244566667776655442110 01121 2467766665555544421 123444455
Q ss_pred HHHHHHHHHHHHHHHHcCCCcceE------------------EeeeeEEEEEEecCCCCCCcchHHHHHHHH
Q 003472 757 RILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQAAGCNAGYCLIELFLYNF 810 (817)
Q Consensus 757 ~~lg~~l~~~l~~~l~~~p~V~~V------------------rG~Glm~gIel~~~~~~~~~~~~~~~~~~~ 810 (817)
..+.+ .+++||.|..| .|.|.|+.|++.... ..+.+....|+.++
T Consensus 271 ~~lA~--------~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~-~~~~~~~~~f~~~l 333 (395)
T PRK05967 271 LEIAR--------WLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGP-EKGKAKAHAFLDAL 333 (395)
T ss_pred HHHHH--------HHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCC-cccHHHHHHHHHhC
Confidence 44443 34555655433 367889999996330 01124455555443
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-05 Score=90.08 Aligned_cols=290 Identities=8% Similarity=0.011 Sum_probs=162.9
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alk 479 (817)
..||+..+ .+.+|. +|.+++++.+.+.....+. ..-..+|-+.|+++.+-. .+.++++++++|++..+++
T Consensus 30 ~~i~l~~n--en~~~~--~~~v~~a~~~~~~~~~~Yp-----~~g~~~Lr~aia~~~~~~-~~~I~vt~Gs~e~i~~~~~ 99 (366)
T PRK01533 30 SFVKLASN--ENPFGC--SPRVLDELQKSWLDHALYP-----DGGATTLRQTIANKLHVK-MEQVLCGSGLDEVIQIISR 99 (366)
T ss_pred ceEEeCCC--CCCCCC--CHHHHHHHHHHHHhcCcCC-----CCCHHHHHHHHHHHhCCC-cceEEECCCHHHHHHHHHH
Confidence 66777653 334554 5899999988765533221 122345666666665532 3679999999999888887
Q ss_pred HHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcc
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (817)
... .. ...|+..+-+|.+-...+ ...|.. +
T Consensus 100 ~l~-----~~----------------gd~vlv~~P~y~~~~~~~-~~~g~~----------------------------v 129 (366)
T PRK01533 100 AVL-----KA----------------GDNIVTAGATFPQYRHHA-IIEGCE----------------------------V 129 (366)
T ss_pred Hhc-----CC----------------CCEEEEcCCcHHHHHHHH-HHcCCE----------------------------E
Confidence 651 11 125666666665422111 111100 0
Q ss_pred eeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp 639 (817)
..++..+. ..| .+.+++.+.+ ..-..+|.-| +.--|.+. +
T Consensus 130 ~~v~~~~~------------~~d------------------~~~l~~~~~~-------~~~~v~i~~P--~NPTG~~~-~ 169 (366)
T PRK01533 130 KEVALNNG------------VYD------------------LDEISSVVDN-------DTKIVWICNP--NNPTGTYV-N 169 (366)
T ss_pred EEeecCCC------------CcC------------------HHHHHHHhCc-------CCcEEEEeCC--CCCCCCCc-C
Confidence 11111000 001 2445555541 1223455666 55567766 6
Q ss_pred HHHHHHHHHHHhhcCCcEEEeeeeecccccccc-chhhhcCCCCcee---ecccccC-CCCCcceEEEechHHHhhhcCC
Q 003472 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (817)
Q Consensus 640 ~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a~e~~gv~PDiv---tlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~ 714 (817)
.+-+++|.++|++++ ++|+||+...|-.-+.. -......-.+.++ +|||.+| .| +-+|.+++.+++++.+...
T Consensus 170 ~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G-lRiG~~i~~~~~~~~l~~~ 247 (366)
T PRK01533 170 DRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLAS-FRVGYAVGHEELIEKLNVV 247 (366)
T ss_pred HHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChH-HHHhHHhCCHHHHHHHHHh
Confidence 777888999998877 57789998766221211 1111112123333 7899998 67 6788899999999887531
Q ss_pred CccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecC
Q 003472 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (817)
Q Consensus 715 ~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~ 794 (817)
-.+|.-+.++.+++.++|+ +.++.+.+.+......+ .+.+.++...+ .-....|.++-+.+. +
T Consensus 248 --------~~~~~~~~~~q~aa~~~l~---~~~~~~~~~~~~~~~r~----~~~~~l~~~g~-~~~~~~~nf~~~~~~-~ 310 (366)
T PRK01533 248 --------RLPFNVSSLAQKAATIAFG---DDEFIEEIVRVNTEGLR----QYESFCKENEI-PFYQSQTNFIFLPVE-N 310 (366)
T ss_pred --------cCCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHH----HHHHHHHhCCC-ccCCCcCcEEEEeCC-C
Confidence 1357788888888888873 33333333332222222 23344444432 222345777777763 1
Q ss_pred CCCCCcchHHHHHHHHHHcCCC
Q 003472 795 GCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 795 ~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
...+...++++||+
T Consensus 311 --------~~~~~~~l~~~GI~ 324 (366)
T PRK01533 311 --------GGEIYEACAHAGFI 324 (366)
T ss_pred --------HHHHHHHHHHCCcE
Confidence 14577888899984
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.6e-05 Score=87.27 Aligned_cols=173 Identities=13% Similarity=0.009 Sum_probs=97.9
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch-hhh--cCC--CCcee--eccccc
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADL--LGC--VPDIA--CYGKLL 691 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a-~e~--~gv--~PDiv--tlgK~L 691 (817)
++.+|++... +.-.|... +.+.+++|.++|+++|+++|.||++..|...+.... ... .+. ..-|+ +|+|.+
T Consensus 142 ~~~~v~~~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~ 219 (357)
T TIGR03539 142 GPDLIWLNSP-GNPTGRVL-SVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRS 219 (357)
T ss_pred CccEEEEeCC-CCCcCccC-CHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEecccccc
Confidence 4566766654 56667666 678899999999999999999999976643333211 110 011 11233 899998
Q ss_pred C-CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHH
Q 003472 692 T-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (817)
Q Consensus 692 g-gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~ 770 (817)
| .| +=+|.+++++++++.+... ....++..+.++.+++.++| +++...+++.+.-+...+ .+.+.
T Consensus 220 ~~~G-~R~G~~i~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~----~~~~~ 285 (357)
T TIGR03539 220 NLAG-YRAGFVAGDPALVAELLTV------RKHAGLMVPAPVQAAMVAAL---GDDGHVAEQKARYAARRA----QLKPA 285 (357)
T ss_pred CCCc-eeEEEEecCHHHHHHHHHH------HhhcccCCCHHHHHHHHHHc---CCHHHHHHHHHHHHHHHH----HHHHH
Confidence 5 46 6788899999988877421 12234556677666666655 332222222222222222 23344
Q ss_pred HHcCCC-cceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 771 ISSHRT-VQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 771 l~~~p~-V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+++++. +....| |.++-+++.. ....+...+.++||+
T Consensus 286 L~~~g~~~~~p~~-~~~~~~~~~~--------~~~~~~~~l~~~gV~ 323 (357)
T TIGR03539 286 LEKAGFRIDHSEA-GLYLWATRGE--------DAWDTVDRLAELGIL 323 (357)
T ss_pred HHHcCCCCcCCCc-cEEEEEECCC--------CHHHHHHHHHhCCEE
Confidence 444432 111222 5555555421 224566777788873
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.6e-05 Score=86.17 Aligned_cols=177 Identities=11% Similarity=0.056 Sum_probs=98.9
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch-hhhcCCCCc----eeecccccC-C
Q 003472 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPD----IACYGKLLT-G 693 (817)
Q Consensus 620 iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a-~e~~gv~PD----ivtlgK~Lg-g 693 (817)
...++.-| +.-.|.+. +++-+++|.++|++||+++|.||+...|---+..+. ...+.-.+| +-+|||.+| -
T Consensus 167 ~~v~l~~P--~NPtG~~~-s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~p 243 (405)
T PRK09148 167 IALIVNYP--SNPTAYVA-DLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMA 243 (405)
T ss_pred eEEEEeCC--CCCCCcCC-CHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCc
Confidence 34555556 34456655 788899999999999999999999976521122111 111111233 237899998 6
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +=+|.+++++++++.+..- ....+++.++++..++.+.|+- .++..+++.+..+...+. +.+.+++
T Consensus 244 G-lR~G~~v~~~~~i~~l~~~------~~~~~~~~~~~~q~~~~~~L~~--~~~~~~~~~~~~~~~r~~----l~~~L~~ 310 (405)
T PRK09148 244 G-WRMGFAVGNERLIAALTRV------KSYLDYGAFTPIQVAATAALNG--PQDCIAEMRELYKKRRDV----LVESFGR 310 (405)
T ss_pred c-hheeeeeCCHHHHHHHHHH------HHHhccCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 8 7888899999999887431 1223455566666666665531 122223333333333332 3344444
Q ss_pred CCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGM 815 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv 815 (817)
++.....-.-|+++-+++...- .. .....+...++ ++||
T Consensus 311 ~~~~~~~p~~g~f~~~~l~~~~--~~-~~~~~~~~~ll~~~gV 350 (405)
T PRK09148 311 AGWDIPPPAASMFAWAPIPEAF--RH-LGSLEFSKLLVEKADV 350 (405)
T ss_pred cCCccCCCCeeEEEEEECCCcc--CC-CCHHHHHHHHHHhCCE
Confidence 4431111224677777775421 00 11244555555 5676
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.7e-06 Score=94.26 Aligned_cols=247 Identities=11% Similarity=0.066 Sum_probs=138.4
Q ss_pred ChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCcc
Q 003472 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (817)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~ 521 (817)
++...+|+++|+++.+. ..++.++||..|+..++.... +.| ..||+....|.|...
T Consensus 60 nPtv~~lE~~la~leg~---~~av~~~SG~aAi~~al~all-----~~G----------------D~VI~~~~~Y~~T~~ 115 (432)
T PRK06702 60 NPTLAAFEQKLAELEGG---VGAVATASGQAAIMLAVLNIC-----SSG----------------DHLLCSSTVYGGTFN 115 (432)
T ss_pred CcHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHhc-----CCC----------------CEEEECCCchHHHHH
Confidence 67888999999999873 578999999999999997552 111 368888888876432
Q ss_pred ccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHH
Q 003472 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (817)
Q Consensus 522 galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~ 601 (817)
. +... . ...|. ++.|-|. ..| .
T Consensus 116 ~-~~~~---l----------~~~Gi------------------------------~v~~vd~------~~d--------~ 137 (432)
T PRK06702 116 L-FGVS---L----------RKLGI------------------------------DVTFFNP------NLT--------A 137 (432)
T ss_pred H-HHHH---H----------HHCCC------------------------------EEEEECC------CCC--------H
Confidence 1 1100 0 00000 0001110 000 1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCC
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (817)
+.+++.|. .+..+|++|.. ..-.+.++. +++|.++|+++|+++|+|++.. ....++-+..-
T Consensus 138 ~~l~~~I~--------~~Tk~I~~e~p-gnP~~~v~D----i~~I~~iA~~~gi~livD~T~~------tP~~~~pl~~G 198 (432)
T PRK06702 138 DEIVALAN--------DKTKLVYAESL-GNPAMNVLN----FKEFSDAAKELEVPFIVDNTLA------TPYLCQAFEHG 198 (432)
T ss_pred HHHHHhCC--------cCCeEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEECCCC------chhhCChhhcC
Confidence 44666664 24568889985 333344444 9999999999999999999972 23344444445
Q ss_pred Ccee--ecccccCCCCCcceEEEe-chH----------HHh---------hhcCCC-------ccceeecccCCCCCHHH
Q 003472 682 PDIA--CYGKLLTGGVIPLAATLA-TNA----------VFD---------SFVGDS-------KLKALLHGHSYSAHALG 732 (817)
Q Consensus 682 PDiv--tlgK~LggGy~PlsAvl~-s~~----------i~d---------~~~~~~-------~~~~~~h~~T~~gnPla 732 (817)
.||+ .+.|-++|----++++++ +.. +.+ ...+.. ........+.+..+|..
T Consensus 199 ADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~ 278 (432)
T PRK06702 199 ANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFN 278 (432)
T ss_pred CCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccCCCCHHH
Confidence 7876 678988872123443333 221 110 000000 00001123345778999
Q ss_pred HHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH--cCCCcc----------eE-EeeeeEEEEEEec
Q 003472 733 CAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS--SHRTVQ----------RV-VALGTLCAIELQA 793 (817)
Q Consensus 733 ~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~--~~p~V~----------~V-rG~Glm~gIel~~ 793 (817)
|..++..|+.+.. ..++..+++..+.+.|... ..++ .||... .. +|.|.|+.|+|..
T Consensus 279 a~l~~rgL~Tl~l--R~~r~~~Na~~la~~L~~~--p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg~~sf~l~~ 348 (432)
T PRK06702 279 AYISNIGLETLHL--RMERHSENALAVAKWLADH--ERIEWVNYPGLDSNENYSLAQKYLKKGASGVLTFGIKG 348 (432)
T ss_pred HHHHHhccCcHHH--HHHHHHHHHHHHHHHHHhC--CCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecC
Confidence 9888877766532 2344455666655533321 0010 222211 11 5788999999973
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.8e-05 Score=87.13 Aligned_cols=190 Identities=11% Similarity=0.083 Sum_probs=104.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC-
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv- 680 (817)
+.+++.+++ ...++.++++... +.-.|.+. +.+-+++|.++|++||+++|.||+...+--.|... .....+
T Consensus 152 ~~l~~~l~~-----~~~~~~~v~i~~p-~NPtG~~~-~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~-~~~~~~~ 223 (395)
T PRK08175 152 NELERAIRE-----SYPKPKMMILGFP-SNPTAQCV-ELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKA-PSIMQVP 223 (395)
T ss_pred HHHHHHHhh-----ccCCceEEEEeCC-CCCCCCCC-CHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCC-cchhcCC
Confidence 456666652 1234566666532 45556655 78888999999999999999999996551112211 111111
Q ss_pred -CCce----eecccccC-CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHH
Q 003472 681 -VPDI----ACYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (817)
Q Consensus 681 -~PDi----vtlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~ 754 (817)
.+|. -+++|.+| .| +=+|.+++++++++.+... .....++.+.....++.+.|+- .+...+++.+
T Consensus 224 ~~~~~~i~~~S~SK~~g~pG-lRiG~~~~~~~l~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~ 294 (395)
T PRK08175 224 GAKDVAVEFFTLSKSYNMAG-WRIGFMVGNPELVSALARI------KSYHDYGTFTPLQVAAIAALEG--DQQCVRDIAE 294 (395)
T ss_pred CcccCEEEEeeccccccCcc-hhheeeeCCHHHHHHHHHH------HhhcccCCCcHHHHHHHHHHhC--cHHHHHHHHH
Confidence 1342 37899996 56 6678899999999887531 1112345556666666666532 1111222222
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCC
Q 003472 755 ERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGM 815 (817)
Q Consensus 755 ~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv 815 (817)
.-+...+ .+.+.+++.++....-.-|.++-+++.+.- .......+...++ +.||
T Consensus 295 ~~~~~~~----~~~~~L~~~~~~~~~p~~g~~i~i~l~~~~---~~~~~~~~~~~l~~~~gv 349 (395)
T PRK08175 295 QYKRRRD----VLVKGLHEAGWMVEMPKASMYVWAKIPEPY---AAMGSLEFAKKLLNEAKV 349 (395)
T ss_pred HHHHHHH----HHHHHHHHcCCcccCCCEEEEEEEECCccc---CCCCHHHHHHHHHHhCCE
Confidence 2222222 233444444431111224888888886541 0012355555555 5676
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.7e-05 Score=85.90 Aligned_cols=221 Identities=11% Similarity=0.032 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCC
Q 003472 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (817)
Q Consensus 419 P~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~ 498 (817)
++-.+++.+.+...... ..+...+|.+.++++++. +..++++||++|+..+++.. . . ..
T Consensus 10 ~~~~~~v~~~~~~~~~~-----~g~~~~~le~~la~~~g~---~~~v~~~sgt~al~~~l~al-~-~--~~--------- 68 (380)
T TIGR03588 10 QDDIDAVVEVLKSDFLT-----QGPTVPAFEEALAEYVGA---KYAVAFNSATSALHIACLAL-G-V--GP--------- 68 (380)
T ss_pred HHHHHHHHHHHhcCCcc-----CChhHHHHHHHHHHHHCC---CeEEEEcCHHHHHHHHHHHc-C-C--CC---------
Confidence 44567777777653221 235567899999999884 46777889999999998766 1 0 11
Q ss_pred CccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecC-Cchhhhccccccc
Q 003472 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKD 577 (817)
Q Consensus 499 ~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~-P~~~~~~~~~~~d 577 (817)
...||+...+|++.. .++...|... ..++. |..+
T Consensus 69 -------Gd~Viv~~~~~~~~~-~~~~~~G~~~----------------------------~~~~~~~~~~--------- 103 (380)
T TIGR03588 69 -------GDRVWTTPITFVATA-NCALYCGAKV----------------------------DFVDIDPDTG--------- 103 (380)
T ss_pred -------CCEEEeCCcchHHHH-HHHHHcCCEE----------------------------EEEecCCCcC---------
Confidence 135777777666532 2221111100 00110 0000
Q ss_pred ccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcE
Q 003472 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (817)
Q Consensus 578 ~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilL 657 (817)
..| .+.+++.+.+. ...++.+|++ + ...|...+ +++|.++|++||+++
T Consensus 104 --~~d------------------~~~l~~~i~~~----~~~~t~~v~~--~--~~~G~~~~----~~~i~~l~~~~~~~l 151 (380)
T TIGR03588 104 --NID------------------EDALEKKLAAA----KGKLPKAIVP--V--DFAGKSVD----MQAIAALAKKHGLKI 151 (380)
T ss_pred --CcC------------------HHHHHHHhhcc----cCCCceEEEE--e--CCCCccCC----HHHHHHHHHHcCCEE
Confidence 011 25566666521 1124455552 2 12355444 899999999999999
Q ss_pred EEeeeeeccccccccchhhhcCC--CCceeecc----cccCCCCCcceEEEec-hHHHhhhcC---CCc---c-------
Q 003472 658 IFDEVFTGFWRLGVETTADLLGC--VPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFVG---DSK---L------- 717 (817)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv--~PDivtlg----K~LggGy~PlsAvl~s-~~i~d~~~~---~~~---~------- 717 (817)
|.|++|+ +|-+ +.-...|. --|++++| |.++.| ..|+++.. +++.+.+.. ... .
T Consensus 152 I~D~a~a-~g~~---~~~~~~g~~~~~d~~~~S~~~~K~~~~~--~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 225 (380)
T TIGR03588 152 IEDASHA-LGAE---YGGKPVGNCRYADATVFSFHPVKIITTA--EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQD 225 (380)
T ss_pred EEECCCc-ccCc---cCCEeCCCccccceEEEecCCCCccccc--CceEEEECCHHHHHHHHHHHHCCCCCCcccccccc
Confidence 9999996 4322 11122233 34998877 888654 34445543 555554321 000 0
Q ss_pred ---c---eeecccCCCCCHHHHHHHHHHHHHh
Q 003472 718 ---K---ALLHGHSYSAHALGCAAAAKSIKWF 743 (817)
Q Consensus 718 ---~---~~~h~~T~~gnPla~AAAlA~L~~l 743 (817)
. ....|..+.-+.+.++.+++.|+.+
T Consensus 226 ~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l 257 (380)
T TIGR03588 226 EGPWYYEQQELGFNYRMTDIQAALGLSQLKKL 257 (380)
T ss_pred cCcceeeeeccccccCccHHHHHHHHHHHHHH
Confidence 0 0012334455778888888887776
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.9e-05 Score=87.65 Aligned_cols=173 Identities=10% Similarity=0.070 Sum_probs=94.0
Q ss_pred EEEEEEc-cccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc--hhhh---cCCCCceeecccccC-
Q 003472 620 IGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET--TADL---LGCVPDIACYGKLLT- 692 (817)
Q Consensus 620 iAAvIvE-PV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~--a~e~---~gv~PDivtlgK~Lg- 692 (817)
+.+|++. | +.-.|.+. +.+-+++|.++|++||+++|+||++..|--.|... ..+. .+..-.+.+|||.+|
T Consensus 167 ~~~v~l~~p--~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 243 (385)
T PRK09276 167 AKLMFINYP--NNPTGAVA-DLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNM 243 (385)
T ss_pred ceEEEEeCC--CCCCCCCC-CHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCC
Confidence 4455555 5 44456655 78889999999999999999999997652222111 1111 111122348999996
Q ss_pred CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
.| +=+|.+++++++++.+.... ...+.+.+++...++.+.|+. .+...+++.+..+...+. +.+.++
T Consensus 244 ~G-lRiG~~i~~~~l~~~~~~~~------~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~----l~~~L~ 310 (385)
T PRK09276 244 TG-WRIGFAVGNADLIAGLGKVK------SNVDSGVFQAIQEAGIAALNG--PQEVVEELRKIYQERRDI----LVEGLR 310 (385)
T ss_pred cc-hhheeeeCCHHHHHHHHHHH------hhccCCCCHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 56 67788999999988875311 111223344555555555431 122223333333333333 334444
Q ss_pred cCCCcceEEe-eeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCC
Q 003472 773 SHRTVQRVVA-LGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGM 815 (817)
Q Consensus 773 ~~p~V~~VrG-~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv 815 (817)
+... .-... -|.++-+++.+. .....+...++ ++||
T Consensus 311 ~~~~-~~~~~~~~~~~~v~~~~~------~~~~~l~~~ll~~~gi 348 (385)
T PRK09276 311 KLGL-EVEPPKATFYVWAPVPKG------YTSAEFATLLLDKAGV 348 (385)
T ss_pred hCCC-cccCCCcceEEEEECCCC------CCHHHHHHHHHHhCCE
Confidence 4432 11122 256567776432 12345666665 4676
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.9e-05 Score=85.28 Aligned_cols=178 Identities=13% Similarity=0.086 Sum_probs=95.7
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-chhhhcCCCCc--ee---ecccccC-C
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD--IA---CYGKLLT-G 693 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a~e~~gv~PD--iv---tlgK~Lg-g 693 (817)
+.+++-| +.-.|.+. +.+-+++|.++|+++|+++|.||+...|--.+.. ... ....+| ++ +|+|.+| .
T Consensus 171 ~v~l~~P--~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~--~~~~~~~~vi~~~S~SK~~~~p 245 (404)
T PRK09265 171 AIVIINP--NNPTGAVY-SKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISI--ASLAPDLLCVTFNGLSKAYRVA 245 (404)
T ss_pred EEEEECC--CCCCCcCC-CHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCH--HHcCCCceEEEEecchhhccCc
Confidence 3455556 44556655 6788999999999999999999999766222221 111 112233 22 5799995 4
Q ss_pred CCCcceEEEe--chH----HHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHH
Q 003472 694 GVIPLAATLA--TNA----VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (817)
Q Consensus 694 Gy~PlsAvl~--s~~----i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l 767 (817)
| +-+|.+++ .++ +.+.+.. ....+++.+.++-.++.++|+ +.+..+.+.+..+.+.+. ++.+
T Consensus 246 G-lRiG~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~-r~~~ 313 (404)
T PRK09265 246 G-FRVGWMVLSGPKKHAKGYIEGLDM-------LASMRLCANVPAQHAIQTALG---GYQSINELILPGGRLYEQ-RDRA 313 (404)
T ss_pred c-cceEEEEEeCchHHHHHHHHHHHH-------HhccccCCCcHHHHHHHHHhc---CchhHHHHHHHHHHHHHH-HHHH
Confidence 7 78888885 333 2222210 111245566677676666663 211112222212222222 2334
Q ss_pred HHHHHcCCCcceEE-eeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 768 IQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 768 ~~~l~~~p~V~~Vr-G~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+.+++++.+.-+. .-|+++-+.+.... .......+.+.+.+.++||+
T Consensus 314 ~~~L~~~~~~~~~~p~~g~~l~~~~~~~~-~~~~~~~~~~~~~l~~~gv~ 362 (404)
T PRK09265 314 WELLNAIPGVSCVKPKGALYAFPKLDPKV-YPIHDDEQFVLDLLLQEKVL 362 (404)
T ss_pred HHHHhcCCCCcccCCCcceEEEEEecccc-cCCCCHHHHHHHHHHhCCEE
Confidence 45555665432222 33777777775431 00012344566677788873
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-05 Score=90.41 Aligned_cols=299 Identities=13% Similarity=0.061 Sum_probs=173.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhccccC--CCCCC----ChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHh
Q 003472 412 GPDATLQIELARDMGYTAARFGHVM--FPENV----YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF 485 (817)
Q Consensus 412 ~LGh~~hP~V~~Ai~~q~~~~~~~~--~~~~~----~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~ 485 (817)
..|.. .+.|.+++.+.+..+.... ..... .+...++.+.|+++++.+.-+.++|+.++++|++.++.......
T Consensus 7 ~~~~~-p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~ 85 (371)
T PF00266_consen 7 GTGPM-PKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPL 85 (371)
T ss_dssp SS-B--BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHG
T ss_pred CccCC-CHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhcccccc
Confidence 35666 8999999999887643211 01111 34455777888888875411579999999999999998872111
Q ss_pred hccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCC
Q 003472 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP 565 (817)
Q Consensus 486 t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P 565 (817)
....+|+.....|++.......+.. + .|. .+..++.+
T Consensus 86 ------------------~~g~~vl~~~~~~~s~~~~~~~~~~----~----------~g~-----------~v~~i~~~ 122 (371)
T PF00266_consen 86 ------------------KPGDEVLVTSNEHPSNRYPWEEIAK----R----------KGA-----------EVRVIPAD 122 (371)
T ss_dssp ------------------TTTCEEEEEESSHHHHHHHHHHHHH----H----------TTE-----------EEEEEEEG
T ss_pred ------------------ccccccccccccccccccccccccc----c----------chh-----------hhcccccc
Confidence 1234789999988875421111110 0 000 00011111
Q ss_pred chhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHH
Q 003472 566 EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (817)
Q Consensus 566 ~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~ 645 (817)
.. ... + .+.+++.|. .++..|++--+ ....|.+.| +++
T Consensus 123 ~~-------------~~~--------~--------~~~~~~~l~--------~~~~lv~~~~~-~~~tG~~~p----i~~ 160 (371)
T PF00266_consen 123 PG-------------GSL--------D--------LEDLEEALN--------PDTRLVSISHV-ENSTGVRNP----IEE 160 (371)
T ss_dssp TT-------------SSC--------S--------HHHHHHHHH--------TTESEEEEESB-ETTTTBBSS----HHH
T ss_pred cc-------------chh--------h--------hhhhhhhhc--------cccceEEeecc-cccccEEee----ece
Confidence 00 000 0 255666664 35667777776 777899888 999
Q ss_pred HHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeec--ccccCCCCCcceEEEechHHHhhhcCCCccce----
Q 003472 646 LVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDSKLKA---- 719 (817)
Q Consensus 646 Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~---- 719 (817)
|.++|+++|+++++|=+|+ +|..- .-.+. ..+|++++ -| |+|+ .-+|.+.++++..+.+........
T Consensus 161 I~~~~~~~~~~~~vD~~~~-~g~~~--id~~~--~~~D~~~~s~~K-l~gp-~G~g~l~v~~~~~~~~~p~~~~~~~~~~ 233 (371)
T PF00266_consen 161 IAKLAHEYGALLVVDAAQS-AGCVP--IDLDE--LGADFLVFSSHK-LGGP-PGLGFLYVRPEAIERLRPAKPGGGYLDF 233 (371)
T ss_dssp HHHHHHHTTSEEEEE-TTT-TTTSS----TTT--TTESEEEEESTS-TTSS-STEEEEEEEHHHHHHHHTSSSSSSTTTH
T ss_pred ehhhhhccCCceeEechhc-ccccc--ccccc--cccceeeecccc-cCCC-Cchhhheehhhhhhcccccccccccccc
Confidence 9999999999999999994 54431 22222 35798855 68 8886 457999999998888743211000
Q ss_pred -eec-----cc--CC---CCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCc---c--eEEee
Q 003472 720 -LLH-----GH--SY---SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV---Q--RVVAL 783 (817)
Q Consensus 720 -~~h-----~~--T~---~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V---~--~VrG~ 783 (817)
... .. -| +-+.....+..++|+.+++.+ .+++.++...+.+++.+.+ ++.|.+ + +-.-+
T Consensus 234 ~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g-~~~i~~~~~~l~~~~~~~l----~~~~~~~~~~~~~~~~~ 308 (371)
T PF00266_consen 234 PSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIG-IERIRERIRELAEYLREAL----EELPGIEVLGPDDEPRR 308 (371)
T ss_dssp HHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH----HHTTTEEESSSSCGGBG
T ss_pred ccchhcccccccccccccceeeehhhhHHHHHhhhhccc-cccchhhhhhHHHHHHhhh----hcCCceeEeeecccccc
Confidence 000 00 01 245666777788899885433 3566666666766555543 334432 1 22345
Q ss_pred eeEEEEEEecCCCCCCcchHHHHHHHHHHcCC
Q 003472 784 GTLCAIELQAAGCNAGYCLIELFLYNFLTTGM 815 (817)
Q Consensus 784 Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv 815 (817)
+.++.+.+... ....+...+-++||
T Consensus 309 ~~i~~~~~~~~-------~~~~~~~~L~~~~I 333 (371)
T PF00266_consen 309 PSIVSFNLPGS-------DADDVVKYLEERGI 333 (371)
T ss_dssp TTEEEEEETTS-------SHHHHHHHHHHHTE
T ss_pred cceEEEeecCC-------CHHHHHHHHhhcCE
Confidence 77788888432 22444444444454
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.5e-05 Score=89.80 Aligned_cols=314 Identities=11% Similarity=0.077 Sum_probs=159.1
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCC-CcceEEEeCChHHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~-~~~~v~f~~SGseA~E~Al 478 (817)
..|++..|.- ..+|....+++.+++.+++.....+....+..+....+++.+...-+.+ ..+.++++++++||+..++
T Consensus 147 ~~i~l~~G~p-~~~~~~~p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~ 225 (517)
T PRK13355 147 HILKLNIGNP-APFGFRTPDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSM 225 (517)
T ss_pred CeEEecCcCC-CcCCCCCCHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHH
Confidence 5555555422 2456643788999998887653333222233455566666664432111 1357999999999998888
Q ss_pred HHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCc
Q 003472 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (817)
Q Consensus 479 klA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (817)
+... .. ...|+...-+|......+ ...|..
T Consensus 226 ~~l~-----~~----------------Gd~Vli~~P~y~~y~~~~-~~~g~~---------------------------- 255 (517)
T PRK13355 226 SALL-----DD----------------GDEVLIPSPDYPLWTACV-NLAGGT---------------------------- 255 (517)
T ss_pred HHhC-----CC----------------CCEEEEcCCCCcCHHHHH-HHCCCE----------------------------
Confidence 7651 11 136777777776543221 111111
Q ss_pred ceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003472 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (817)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~p 638 (817)
.+.+|- +.+.-|. .| .+.+++.+. +..-+.+|+-| +.--|.+.
T Consensus 256 --~v~~~~---------------~~~~~~~--~d--------~~~l~~~~~-------~~~k~i~i~nP--~NPTG~v~- 298 (517)
T PRK13355 256 --AVHYRC---------------DEQSEWY--PD--------IDDIRSKIT-------SRTKAIVIINP--NNPTGALY- 298 (517)
T ss_pred --EEEeec---------------CcccCCC--CC--------HHHHHHhcC-------cCceEEEEECC--CCCCCcCc-
Confidence 011100 0000000 00 144555543 22345667788 34456665
Q ss_pred CHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCce--e---ecccccC-CCCCcceEEEec--hHH---
Q 003472 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDI--A---CYGKLLT-GGVIPLAATLAT--NAV--- 707 (817)
Q Consensus 639 p~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDi--v---tlgK~Lg-gGy~PlsAvl~s--~~i--- 707 (817)
+.+.+++|.++|++||+++|.||+..-|---|..+. ....+.||. + +|||.++ .| +=+|.++++ +++
T Consensus 299 ~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~-s~~~~~~~~~vi~~~S~SK~~~~~G-~RiG~~i~~~~~~~~~~ 376 (517)
T PRK13355 299 PREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHT-SIASLAPDLFCVTFSGLSKSHMIAG-YRIGWMILSGNKRIAKD 376 (517)
T ss_pred CHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcc-cHHHhCCCCeEEEEecchhhccCcc-cceEEEEeeCchhhHHH
Confidence 688999999999999999999999865521222110 111123564 2 4799975 46 577778743 443
Q ss_pred -HhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeE
Q 003472 708 -FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL 786 (817)
Q Consensus 708 -~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm 786 (817)
.+.+.. .....+..|.++-.++.++|+-. +...+.+.+ .+.+.+. ++.+.+.+++.|.+.-+.-.|.|
T Consensus 377 ~~~~l~~-------~~~~~~~~~~~~q~a~~~aL~~~--~~~~~~~~~-~~~~~~~-r~~l~~~L~~~~g~~~~~p~g~f 445 (517)
T PRK13355 377 YIEGLNM-------LANMRLCSNVPAQSIVQTALGGH--QSVKDYLVP-GGRVYEQ-RELVYNALNAIPGISAVKPKAAF 445 (517)
T ss_pred HHHHHHH-------HhcCcCCcChHHHHHHHHHhcCC--ccHHHHHHH-HHHHHHH-HHHHHHHHhcCCCcccCCCCeee
Confidence 222210 01122345566666666666311 111122222 1222222 23455556666554444455655
Q ss_pred EEE-EEecCCCCCCc-chHHHHHHHHHHcCCC
Q 003472 787 CAI-ELQAAGCNAGY-CLIELFLYNFLTTGMH 816 (817)
Q Consensus 787 ~gI-el~~~~~~~~~-~~~~~~~~~~l~~Gv~ 816 (817)
+.+ ++.... ... +....+.+.+.++||.
T Consensus 446 y~~~~l~~~~--~~~~~~~~~~~~ll~~~gV~ 475 (517)
T PRK13355 446 YIFPKIDVKK--FNIHDDEQFALDLLHDKKVL 475 (517)
T ss_pred EEEeecCccc--CCCCCHHHHHHHHHHhCCEE
Confidence 443 554310 001 1223334455667763
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.2e-05 Score=85.41 Aligned_cols=178 Identities=14% Similarity=0.119 Sum_probs=96.6
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-chhhhcCCCCcee---ecccccC-CCCC
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA---CYGKLLT-GGVI 696 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a~e~~gv~PDiv---tlgK~Lg-gGy~ 696 (817)
.++.-| +.--|.+. +.+-+++|.++|+++|+++|.||+...|-..+.. .....+.-..+++ +|||.+| .| +
T Consensus 181 i~~~~p--~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pG-l 256 (412)
T PTZ00433 181 LIMTNP--SNPCGSNF-SRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPG-W 256 (412)
T ss_pred EEEeCC--CCCCCccc-CHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCCCC-e
Confidence 344455 44456555 6788999999999999999999999776322321 1111111111233 7899985 57 7
Q ss_pred cceEEEe------chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHH
Q 003472 697 PLAATLA------TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (817)
Q Consensus 697 PlsAvl~------s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~ 770 (817)
=+|.+++ .+++.+.+.. ....+++.++++.+++.+.|+-- .++..+++.+..+.-.+ .+.+.
T Consensus 257 RlG~~i~~~p~~~~~~~~~~~~~-------~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~r~----~l~~~ 324 (412)
T PTZ00433 257 RLGWLLLVDPHGNGGDFLDGMKR-------LGMLVCGPCSVVQAALGEALLNT-PQEHLEQIVAKLEEGAM----VLYNH 324 (412)
T ss_pred eEEEEEEeCCcccHHHHHHHHHH-------HhhccCCCChHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHH----HHHHH
Confidence 8888886 2456655532 11224566777777776666421 11222233222222222 34455
Q ss_pred HHcCCCcceEEe-eeeEEEEEEecCCCCCCcchHHHHHHHHHH-cCCC
Q 003472 771 ISSHRTVQRVVA-LGTLCAIELQAAGCNAGYCLIELFLYNFLT-TGMH 816 (817)
Q Consensus 771 l~~~p~V~~VrG-~Glm~gIel~~~~~~~~~~~~~~~~~~~l~-~Gv~ 816 (817)
++++..+.-+.- -|.++-+.+.... -.+......+...+++ +||+
T Consensus 325 L~~~~~~~~~~p~gg~f~~~~l~~~~-~~~~~~~~~~~~~ll~~~gV~ 371 (412)
T PTZ00433 325 IGECIGLSPTMPRGSMFLMSRLDLEK-FRDIKSDVEFYEKLLEEENVQ 371 (412)
T ss_pred HhcCCCCcccCCCeeEEEEEEechhh-cCCCCCHHHHHHHHHHhcCEE
Confidence 555433322233 3667777775321 0011124567777774 6874
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.8e-05 Score=89.60 Aligned_cols=297 Identities=11% Similarity=0.035 Sum_probs=149.5
Q ss_pred CHHHHHHHHHHHH--hccccC---CCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhcccccc
Q 003472 418 QIELARDMGYTAA--RFGHVM---FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVL 492 (817)
Q Consensus 418 hP~V~~Ai~~q~~--~~~~~~---~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~ 492 (817)
.|.|.+++.+... .+..++ ...+..+...++.+.+++++|-+ +..++.++|+.+...++.++ |.+...+|.
T Consensus 83 ~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~--~~~l~~~~GA~a~~~~l~~~-r~~~~~~Gd- 158 (481)
T PRK04366 83 NPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMD--AVTLQPAAGAHGELTGLLMI-RAYHEARGD- 158 (481)
T ss_pred CHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCC--ceEEEeCcHHHHHHHHHHHH-HHHhhccCc-
Confidence 6888888887522 222221 11123455678888899988732 23555678888887777766 443322221
Q ss_pred ccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcc
Q 003472 493 VDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (817)
Q Consensus 493 ~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~ 572 (817)
..|.+|+..+. .|.+...++...|.. +..++....+
T Consensus 159 -----------~~~~~Vlv~~~-~hp~~~~~~~~~G~~----------------------------vv~v~~~~~~---- 194 (481)
T PRK04366 159 -----------TKRTEVIVPDS-AHGTNPASAAMAGFK----------------------------VVEIPSNEDG---- 194 (481)
T ss_pred -----------CCCCEEEEcCC-ccHhHHHHHHHcCCE----------------------------EEEeecCCCC----
Confidence 12456666654 566555443332211 0111111000
Q ss_pred cccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCcccCCHHHHHHHHHHHh
Q 003472 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQ 651 (817)
Q Consensus 573 ~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIv-EPV~qg~gG~~~pp~~yl~~Lr~Lc~ 651 (817)
..| .+.+++.+. . ++++|++ -| . ..|.+ ..-+++|.++|+
T Consensus 195 -------~~D------------------~e~L~~~i~-------~-~t~~V~v~~P--n-~tG~~---~~dl~eI~~~a~ 235 (481)
T PRK04366 195 -------LVD------------------LEALKAAVG-------E-DTAALMLTNP--N-TLGLF---ERNILEIAEIVH 235 (481)
T ss_pred -------CcC------------------HHHHHhhcc-------c-CCeEEEEeCC--C-Ccccc---chHHHHHHHHHH
Confidence 001 245555553 2 3444444 44 2 33443 123899999999
Q ss_pred hcCCcEEEeeeeeccccccccchhhhcCCCCceeec--ccccCC----CCCc-ceEEEechHHHhhhcCCC---ccceee
Q 003472 652 NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTG----GVIP-LAATLATNAVFDSFVGDS---KLKALL 721 (817)
Q Consensus 652 ~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~Lgg----Gy~P-lsAvl~s~~i~d~~~~~~---~~~~~~ 721 (817)
++|+++|+|+++. .+-+|.. ....+| .|+++. -|.|++ | -| +|.+.+++++.+.+...- ....+.
T Consensus 236 ~~gal~iVD~a~~-~~~~g~~-~~~~~G--aD~~~~~~hK~l~~P~g~G-gp~~G~l~~~~~~~~~lp~~~v~~~g~~~~ 310 (481)
T PRK04366 236 EAGGLLYYDGANL-NAILGKA-RPGDMG--FDVVHLNLHKTFSTPHGGG-GPGSGPVGVKEELAPFLPVPVVEKDGDRYR 310 (481)
T ss_pred HcCCEEEEEecCh-hhhcccC-CccccC--CCEEEEechhhcCCCCCCC-CCCeeeeeehhhhHhhCCCCeeeccCCcee
Confidence 9999999999984 2233322 112233 598855 388762 2 23 455667877776653210 000111
Q ss_pred c----------ccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeee-EEEEE
Q 003472 722 H----------GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGT-LCAIE 790 (817)
Q Consensus 722 h----------~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Gl-m~gIe 790 (817)
. .-.++++.+.+.++...+..+-.+++ .++.++...+..+|.++|.+. +..+.+ +... .+.+.
T Consensus 311 l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl-~~~a~~~~~~a~~l~~~L~~~---~~~~~~--~~~~~~~~~~ 384 (481)
T PRK04366 311 LDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGL-REVSEDAVLNANYLKARLKDI---YDLPYD--RPCMHEFVLS 384 (481)
T ss_pred ecccccccCCCcccccCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHhh---CcccCC--CCeeEEEEEE
Confidence 0 11234555666666666666644333 233344444555555555443 222211 1100 01111
Q ss_pred ---EecCCCCCCcchHHHHHHHHHHcCCCC
Q 003472 791 ---LQAAGCNAGYCLIELFLYNFLTTGMHP 817 (817)
Q Consensus 791 ---l~~~~~~~~~~~~~~~~~~~l~~Gv~~ 817 (817)
|...+ .....+...+.++|+++
T Consensus 385 ~~~~~~~g-----~~~~~v~~~L~~~Gi~~ 409 (481)
T PRK04366 385 GKKLKETG-----VRTLDIAKRLLDYGFHP 409 (481)
T ss_pred CccccccC-----CCHHHHHHHHHHCCccC
Confidence 11111 24566888889999863
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.1e-06 Score=93.54 Aligned_cols=236 Identities=14% Similarity=0.101 Sum_probs=140.7
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..+|....|+++|+++-+ .+.+++++||..|+.+++...+ +.| ..||.....|++.
T Consensus 59 ~~nPt~~~le~~la~LEg---~~~a~~~~SGmaAi~~~~~~ll-----~~G----------------D~Vv~~~~~Yg~t 114 (395)
T PRK08114 59 RGTLTHFSLQEAMCELEG---GAGCALYPCGAAAVANAILAFV-----EQG----------------DHVLMTGTAYEPT 114 (395)
T ss_pred CCChhHHHHHHHHHHHhC---CCeEEEEhHHHHHHHHHHHHHc-----CCC----------------CEEEEeCCCcHHH
Confidence 457888899999999866 3689999999999999887552 111 2566666666553
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
...+.-. ...+|.- +..+. ..|
T Consensus 115 -~~l~~~~-------------l~~~Gi~-----------v~~vd----------------~~d----------------- 136 (395)
T PRK08114 115 -QDFCSKI-------------LSKLGVT-----------TTWFD----------------PLI----------------- 136 (395)
T ss_pred -HHHHHHH-------------HHhcCcE-----------EEEEC----------------CCC-----------------
Confidence 2221100 0000100 00000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcC--CcEEEeeeeeccccccccchhhh
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK--IPVIFDEVFTGFWRLGVETTADL 677 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~G--ilLI~DEV~TGfGRtG~~~a~e~ 677 (817)
.+.+++.|+ .+...|++|.+ ...-|.+.+ +++|.++|+++| +++|+|.+++ +|.. ++-
T Consensus 137 -~~~l~~~l~--------~~TrlV~~Etp-sNp~~~v~D----I~~Ia~ia~~~g~g~~lvVDnT~a----~p~~--~~p 196 (395)
T PRK08114 137 -GADIAKLIQ--------PNTKVVFLESP-GSITMEVHD----VPAIVAAVRSVNPDAVIMIDNTWA----AGVL--FKA 196 (395)
T ss_pred -HHHHHHhcC--------CCceEEEEECC-CCCCCEeec----HHHHHHHHHHhCCCCEEEEECCCc----cccc--cCH
Confidence 134566664 24679999997 777788888 999999999985 9999999994 2322 444
Q ss_pred cCCCCceee--cccccCCC-CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHH
Q 003472 678 LGCVPDIAC--YGKLLTGG-VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (817)
Q Consensus 678 ~gv~PDivt--lgK~LggG-y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~ 754 (817)
...-.|+++ .-|.|+|. =+-.|+++.+++.++.+.... ...|. ..+|..|--.+..|+-+.- ..++..+
T Consensus 197 l~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~----~~~G~--~~~p~~a~l~~rgl~TL~l--R~~~~~~ 268 (395)
T PRK08114 197 LDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENS----YLMGQ--MVDADTAYMTSRGLRTLGV--RLRQHEE 268 (395)
T ss_pred HHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHH----HhccC--CCCHHHHHHHHcCCCcHHH--HHHHHHH
Confidence 444578885 57988873 134555666776655442110 01121 3356666655444443311 1234445
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcceE------------------EeeeeEEEEEEec
Q 003472 755 ERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (817)
Q Consensus 755 ~~~~lg~~l~~~l~~~l~~~p~V~~V------------------rG~Glm~gIel~~ 793 (817)
++..+.+ .+++||.|..| .|.|.|+.|++..
T Consensus 269 na~~va~--------~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~ 317 (395)
T PRK08114 269 SSLKVAE--------WLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKK 317 (395)
T ss_pred HHHHHHH--------HHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecC
Confidence 5555443 45566665544 3678899999964
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-05 Score=89.65 Aligned_cols=276 Identities=14% Similarity=0.122 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCC
Q 003472 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (817)
Q Consensus 419 P~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~ 498 (817)
.+..+++.+.++....+ ...+...+|+++++++++ .+.++.++||+.|...|++.. . .
T Consensus 5 ~e~~~~v~~~l~s~~~~----~~g~~~~~fE~~~a~~~g---~~~~~~~~sgt~Al~~al~~l-~-~------------- 62 (363)
T PF01041_consen 5 EEEIDAVLEVLRSGWLS----TYGPYVEEFEKEFAEYFG---VKYAVAVSSGTSALHLALRAL-G-L------------- 62 (363)
T ss_dssp HHHHHHHHHHHHHTCCS----SSSHHHHHHHHHHHHHHT---SSEEEEESSHHHHHHHHHHHT-T-G-------------
T ss_pred HHHHHHHHHHHHhCCcc----CCCHHHHHHHHHHHHHhC---CCeEEEeCChhHHHHHHHHhc-C-C-------------
Confidence 34556666766654222 226889999999999998 468999999999999999987 1 1
Q ss_pred CccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccc
Q 003472 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578 (817)
Q Consensus 499 ~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~ 578 (817)
.....||.-.-+|.+.....+.++..+.
T Consensus 63 -----~~gdeVi~p~~t~~~~~~ai~~~G~~pv----------------------------------------------- 90 (363)
T PF01041_consen 63 -----GPGDEVIVPAYTFPATASAILWAGAEPV----------------------------------------------- 90 (363)
T ss_dssp -----GTTSEEEEESSS-THHHHHHHHTT-EEE-----------------------------------------------
T ss_pred -----CcCceEecCCCcchHHHHHHHHhccEEE-----------------------------------------------
Confidence 1124777777777663322222221110
Q ss_pred cccCcc-hhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcE
Q 003472 579 TFCSRD-EIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (817)
Q Consensus 579 ~~~d~~-~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilL 657 (817)
|.|.| +-+.. | .+.+++.+.+ +..|||+=-+ . |... -+.+|+++|+++|+.|
T Consensus 91 -~~Di~~~~~~i--d--------~~~~~~~i~~--------~t~ai~~~h~-~---G~~~----d~~~i~~~~~~~~i~l 143 (363)
T PF01041_consen 91 -FVDIDPETLNI--D--------PEALEKAITP--------KTKAILVVHL-F---GNPA----DMDAIRAIARKHGIPL 143 (363)
T ss_dssp -EE-BETTTSSB-----------HHHHHHHHHT--------TEEEEEEE-G-G---GB-------HHHHHHHHHHTT-EE
T ss_pred -EEeccCCcCCc--C--------HHHHHHHhcc--------CccEEEEecC-C---CCcc----cHHHHHHHHHHcCCcE
Confidence 11111 00000 0 2567777762 3466666554 3 3333 3999999999999999
Q ss_pred EEeeeeeccccccccchhhhcCCCCceeecc----cccCCCCCcceEEEech-HHHhhh---cCCCcc----ceee----
Q 003472 658 IFDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLATN-AVFDSF---VGDSKL----KALL---- 721 (817)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv~PDivtlg----K~LggGy~PlsAvl~s~-~i~d~~---~~~~~~----~~~~---- 721 (817)
|-|=.|+ +|- .+--...|-.-|+.+|| |.++.|= -|++++++ ++++.+ ...... ..+.
T Consensus 144 IeD~a~a-~g~---~~~g~~~G~~gd~~~fSf~~~K~i~~ge--GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 217 (363)
T PF01041_consen 144 IEDAAQA-FGA---RYKGRPVGSFGDIAIFSFHPTKIITTGE--GGAVVTNDPELAERARALRNHGRSRDAFRRYRHELP 217 (363)
T ss_dssp EEE-TTT-TT----EETTEETTSSSSEEEEESSTTSSS-SSS---EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSS
T ss_pred EEccccc-cCc---eeCCEeccCCCCceEecCCCCCCCcCCC--CeeEEecHHHHHHHhhhhhccCcCcccccccccccc
Confidence 9999995 432 22223334444888876 8886431 24566654 444433 222110 1111
Q ss_pred cccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcc------eE-EeeeeEEEEEEecC
Q 003472 722 HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ------RV-VALGTLCAIELQAA 794 (817)
Q Consensus 722 h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~------~V-rG~Glm~gIel~~~ 794 (817)
.|..|-.+++.+|.+++-|+.+++ .+ +.-++..+. +.+.+++.+.+. +. +.....+.+.+.+.
T Consensus 218 ~g~n~rm~~~~AAigl~QL~~L~~-----~~-~~R~~~a~~----y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~ 287 (363)
T PF01041_consen 218 PGYNFRMSELQAAIGLAQLKRLDE-----II-ARRRENAQR----YREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDE 287 (363)
T ss_dssp S--B-B-BHHHHHHHHHHHHTHHH-----HH-HHHHHHHHH----HHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCC
T ss_pred CCcccccHHHHHHHHHHHHHHhhh-----hH-HHHHHHHHH----HHHHHhcCCCccccccccccccccccccccccccc
Confidence 356677899999999999988854 22 222233332 334455554331 11 12333445544433
Q ss_pred CCCCCcchHHHHHHHHHHcCC
Q 003472 795 GCNAGYCLIELFLYNFLTTGM 815 (817)
Q Consensus 795 ~~~~~~~~~~~~~~~~l~~Gv 815 (817)
. ......++..+.++||
T Consensus 288 ~----~~~rd~l~~~L~~~GI 304 (363)
T PF01041_consen 288 A----LADRDELVEALRARGI 304 (363)
T ss_dssp G----CSTHHHHHHHHHHTTB
T ss_pred c----cchHHHHHHHHHHCCC
Confidence 1 1246778888888887
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >CHL00175 minD septum-site determining protein; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.5e-06 Score=90.33 Aligned_cols=88 Identities=14% Similarity=0.121 Sum_probs=65.2
Q ss_pred CCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC--------
Q 003472 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV-------- 292 (817)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~-------- 292 (817)
+|+|||.+.+|+... ........ -.+|+|+.....++.++...++.+...+....++|+|++...
T Consensus 127 yD~VIiDtpp~~~~~------~~~~l~~a-D~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~~~~ 199 (281)
T CHL00175 127 YDYILIDCPAGIDVG------FINAIAPA-QEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPDMIQANDMM 199 (281)
T ss_pred CCEEEEeCCCCCCHH------HHHHHHhc-CeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChhhhhhhccc
Confidence 999999998765322 12222222 368899999999999999999999988777789999998322
Q ss_pred CHHHHHHhhcCCCcEEe-cCCCCCCC
Q 003472 293 NEVPLMSYLRNRVPVLV-LPPLPQDS 317 (817)
Q Consensus 293 ~~~~l~~~~~~~~pvlg-iP~~~~~~ 317 (817)
..+.+++++ +.|+++ ||+.+.+.
T Consensus 200 ~~~~l~~~~--~~~~~~~Ip~d~~v~ 223 (281)
T CHL00175 200 SVRDVQEML--GIPLLGAIPEDENVI 223 (281)
T ss_pred cHHHHHHHh--CCCeEEEccCCHhHH
Confidence 233466777 899999 99887654
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.8e-05 Score=85.31 Aligned_cols=179 Identities=16% Similarity=0.125 Sum_probs=99.0
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GG 694 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gG 694 (817)
..+.++.-| +.--|.+. +.+-+++|.++|+++|+++|+||+..+|.-.+... ......++++ +++|.+| .|
T Consensus 164 ~~~v~l~~p--~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~--~~~~~~~~vi~~~S~SK~~~~~G 238 (388)
T PRK07337 164 TRGVLLASP--SNPTGTSI-APDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPV--SALSLGDDVITINSFSKYFNMTG 238 (388)
T ss_pred ceEEEEECC--CCCCCcCc-CHHHHHHHHHHHHHCCCEEEEeccccccccCCCCc--ChhhccCCEEEEEechhhcCCch
Confidence 344455555 34456555 78889999999999999999999987774333211 1112345654 6799997 57
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+=+|.+++.+++++.+... ......+.++++..++.++++ ++. .+.+.+..+.+.+. ++.+.+.++++
T Consensus 239 -~RiG~~~~~~~l~~~l~~~------~~~~~~~~s~~~q~~~~~~l~---~~~-~~~~~~~~~~~~~~-r~~~~~~L~~~ 306 (388)
T PRK07337 239 -WRLGWLVVPEALVGTFEKL------AQNLFICASALAQHAALACFE---PDT-LAIYERRRAEFKRR-RDFIVPALESL 306 (388)
T ss_pred -hheeeeecCHHHHHHHHHH------HHHhccCCChHHHHHHHHHhc---cCc-hHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 6788899999988877431 111233456666666555542 211 12222222222221 12234445554
Q ss_pred CCcceE-EeeeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCC
Q 003472 775 RTVQRV-VALGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGM 815 (817)
Q Consensus 775 p~V~~V-rG~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv 815 (817)
++...+ ..-|.++-+++..... .+......|...++ ++||
T Consensus 307 ~~~~~~~p~~g~f~~~~~~~~~~-~~~~~~~~~~~~ll~~~gv 348 (388)
T PRK07337 307 GFKVPVMPDGAFYVYADCRGVAH-PAAGDSAALTQAMLHDAGV 348 (388)
T ss_pred CCccccCCCeeEEEEEecccccC-CCCCCHHHHHHHHHHhCCE
Confidence 432212 2347888888854210 01112344555544 5676
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.8e-05 Score=85.05 Aligned_cols=304 Identities=10% Similarity=-0.016 Sum_probs=158.1
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCC-C-c-ceEEEeCChHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-W-A-SRAYFSDNGSTAIEI 476 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~-~-~-~~v~f~~SGseA~E~ 476 (817)
.+||+..|.- .++ . .+.+.+++.+.+.....+....+..+....+++.+.+..+-. . - +.++.++++++|...
T Consensus 30 ~~i~l~~~~p--~~~-~-~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~ 105 (396)
T PRK09147 30 PPISLSIGEP--KHP-T-PAFIKDALAANLDGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFA 105 (396)
T ss_pred CeEecCCCCC--CCC-C-CHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHH
Confidence 7788776542 233 2 577888888766543322212233455667777776543411 0 1 368889999999988
Q ss_pred HHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCccccc
Q 003472 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (817)
Q Consensus 477 AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (817)
+++... . .| .....|+.-.-+|.+-... ....|.
T Consensus 106 ~~~~l~----~-~~-------------~~gd~vlv~~P~y~~~~~~-~~~~g~--------------------------- 139 (396)
T PRK09147 106 FAQTVI----D-RD-------------GPGPLVVCPNPFYQIYEGA-ALLAGA--------------------------- 139 (396)
T ss_pred HHHHHc----C-CC-------------CCCCEEEEcCCCccchHHH-HHhcCC---------------------------
Confidence 888661 1 10 0023566666666542211 111111
Q ss_pred CcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE-EEEccccccCCCc
Q 003472 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA-LIIEPVVHAAGGM 635 (817)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAA-vIvEPV~qg~gG~ 635 (817)
..++.|-.- +.-|. -| .+.+++.+.+ ++.+ +|.-| +.=.|.
T Consensus 140 ---~~~~vp~~~---------------~~~~~--~d--------~~~l~~~~~~--------~~k~i~l~nP--~NPTG~ 181 (396)
T PRK09147 140 ---EPYFLNCDP---------------ANNFA--PD--------FDAVPAEVWA--------RTQLLFVCSP--GNPTGA 181 (396)
T ss_pred ---EEEEeccCc---------------cccCc--cC--------HHHHHHHHhh--------ccEEEEEcCC--CCCcCc
Confidence 011111000 00000 00 1344444431 2334 44555 444566
Q ss_pred ccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc--cch-hh---hcCC-CCc-ee---ecccccC-CCCCcceEEEe
Q 003472 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETT-AD---LLGC-VPD-IA---CYGKLLT-GGVIPLAATLA 703 (817)
Q Consensus 636 ~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~--~~a-~e---~~gv-~PD-iv---tlgK~Lg-gGy~PlsAvl~ 703 (817)
+. +++-+++|.++|++|++++|.||+..-|--.+. ... .. ..+. ..| ++ +|||.++ .| +-+|.+++
T Consensus 182 ~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G-lRiG~~~~ 259 (396)
T PRK09147 182 VL-PLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPG-LRSGFVAG 259 (396)
T ss_pred cC-CHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCcc-ceeeeecC
Confidence 55 789999999999999999999999975521121 111 11 1111 112 22 8999864 47 78888999
Q ss_pred chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEee
Q 003472 704 TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL 783 (817)
Q Consensus 704 s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~ 783 (817)
++++++.+... ....+++.++++.+++.+.+. .++ .+.++.+.+.+.. +.+.+.++++ .......-
T Consensus 260 ~~~l~~~~~~~------~~~~~~~~~~~~q~a~~~~~~---~~~---~~~~~~~~~~~~~-~~~~~~L~~~-~~~~~p~~ 325 (396)
T PRK09147 260 DAALLKKFLLY------RTYHGCAMPPAVQAASIAAWN---DEA---HVRENRALYREKF-DAVTPILAPV-LDVQLPDA 325 (396)
T ss_pred CHHHHHHHHHH------hhhcccCCCHHHHHHHHHHhc---chh---HHHHHHHHHHHHH-HHHHHHHHHh-cCCCCCCe
Confidence 99998877421 112345667777777766652 222 2222222332221 1233334333 11112235
Q ss_pred eeEEEEEEecCCCCCCcchHHHHHHHHH-HcCC
Q 003472 784 GTLCAIELQAAGCNAGYCLIELFLYNFL-TTGM 815 (817)
Q Consensus 784 Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv 815 (817)
|.++-+++..+ ...+...++ ++||
T Consensus 326 g~f~~~~~~~~--------~~~~~~~ll~~~gv 350 (396)
T PRK09147 326 GFYLWAKVPGD--------DTEFARRLYADYNV 350 (396)
T ss_pred eEEEEEECCCC--------HHHHHHHHHHhCCE
Confidence 88888887511 234556665 4676
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-05 Score=92.72 Aligned_cols=161 Identities=17% Similarity=0.147 Sum_probs=100.5
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.+. +.+++++||++|+..|+...+ +. ...||+....|++.
T Consensus 61 ~~~p~~~~le~~lA~l~g~---~~av~~sSGt~Al~~al~~ll-----~~----------------Gd~Vi~~~~~y~~t 116 (433)
T PRK08134 61 ISNPTVAVLEERVAALEGG---VGAIATASGQAALHLAIATLM-----GA----------------GSHIVASSALYGGS 116 (433)
T ss_pred CcChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHh-----CC----------------CCEEEEeCCccHHH
Confidence 3567889999999999874 468999999999999987652 11 12677777777763
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
. ..+... .. + .|. . +.|-|.+ |
T Consensus 117 ~-~~~~~~-l~--~----------~Gi-------------~-----------------v~~vd~~-------d------- 138 (433)
T PRK08134 117 H-NLLHYT-LR--R----------FGI-------------E-----------------TTFVKPG-------D------- 138 (433)
T ss_pred H-HHHHHH-Hh--h----------CCe-------------E-----------------EEEECCC-------C-------
Confidence 2 211100 00 0 000 0 0011110 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.|. .++.+|++|-+ ....|.+.+ +++|.++|+++|+++|+|.+|. .|..- .-..
T Consensus 139 -~~~l~~~i~--------~~TklV~~e~~-~np~g~v~D----i~~I~~la~~~gi~livD~t~a-~~~~~-----~pl~ 198 (433)
T PRK08134 139 -IDGWRAAIR--------PNTRLLFGETL-GNPGLEVLD----IPTVAAIAHEAGVPLLVDSTFT-TPYLL-----RPFE 198 (433)
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CcccCcccC----HHHHHHHHHHcCCEEEEECCCc-ccccC-----Cchh
Confidence 145666664 24678899986 666777777 9999999999999999999994 22211 1223
Q ss_pred CCCceeec--ccccCC-CCCcceEEEe
Q 003472 680 CVPDIACY--GKLLTG-GVIPLAATLA 703 (817)
Q Consensus 680 v~PDivtl--gK~Lgg-Gy~PlsAvl~ 703 (817)
.-.|++++ .|-++| | --++++++
T Consensus 199 ~GaD~vv~S~tK~l~g~g-~~~gG~v~ 224 (433)
T PRK08134 199 HGADLVYHSATKFLGGHG-TAIGGVLV 224 (433)
T ss_pred cCCCEEEeccccccCCCC-CceEEEEE
Confidence 45688754 677775 4 23444443
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=6e-05 Score=84.47 Aligned_cols=173 Identities=11% Similarity=-0.049 Sum_probs=98.4
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc-hhhh--cCCC-Ccee---eccccc
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADL--LGCV-PDIA---CYGKLL 691 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~-a~e~--~gv~-PDiv---tlgK~L 691 (817)
++.+|++... +.--|.+. +.+-+++|.++|+++|+++|.||++..+.-.|... ..+. .+.. +.++ +|+|.+
T Consensus 148 ~~~~v~~~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 225 (364)
T PRK07865 148 RPALIWLNSP-SNPTGRVL-GVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQS 225 (364)
T ss_pred cceEEEEcCC-CCCCCccC-CHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhcc
Confidence 4566777654 66667666 67889999999999999999999997663333221 1111 0111 1222 799998
Q ss_pred C-CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHH
Q 003472 692 T-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (817)
Q Consensus 692 g-gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~ 770 (817)
| .| +=+|.+++++++.+.+... ....++..+++..+++.+.|+ +++..++..+..+.. ++.+.+.
T Consensus 226 ~~~G-lRiG~i~~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~----~~~l~~~ 291 (364)
T PRK07865 226 NLAG-YRAGFVAGDPALVAELLEV------RKHAGMMVPAPVQAAMVAALG---DDAHVREQRERYARR----RAVLRPA 291 (364)
T ss_pred CCCc-eeeEEEecCHHHHHHHHHH------HHhcCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHH----HHHHHHH
Confidence 6 46 6778899999988877431 112334456676666655553 322222222222222 2234445
Q ss_pred HHcCCCcceEEee-eeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 771 ISSHRTVQRVVAL-GTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 771 l~~~p~V~~VrG~-Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++++.. .-.... |+++-+++.. ....+...+.++||+
T Consensus 292 L~~~g~-~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~gv~ 329 (364)
T PRK07865 292 LEAAGF-RVDHSEAGLYLWATRGE--------DCWDTVAWLAERGIL 329 (364)
T ss_pred HHHcCC-cccCCCccEEEEEeCCC--------CHHHHHHHHHHCCEE
Confidence 555442 111222 5555555521 124566777888874
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.2e-06 Score=92.41 Aligned_cols=161 Identities=10% Similarity=0.066 Sum_probs=99.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.+. +.++.++||..|+..++.... + ++ ..||+.+..|.+
T Consensus 44 ~g~p~~~~lE~~la~leg~---~~~v~~ssG~~Ai~~~l~all-----~---------------~G-d~Vv~~~~~y~~- 98 (397)
T PRK05939 44 QGTPTTAALEAKITKMEGG---VGTVCFATGMAAIAAVFLTLL-----R---------------AG-DHLVSSQFLFGN- 98 (397)
T ss_pred CCCHHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHHc-----C---------------CC-CEEEECCCcccc-
Confidence 3578889999999999873 568888999999998887652 1 11 256666655543
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
+...+..- ..+ |.- +..++ ..|
T Consensus 99 t~~~~~~l--~~~------------G~~-----------v~~v~----------------~~d----------------- 120 (397)
T PRK05939 99 TNSLFGTL--RGL------------GVE-----------VTMVD----------------ATD----------------- 120 (397)
T ss_pred HHHHHHHH--Hhc------------CCE-----------EEEEC----------------CCC-----------------
Confidence 32211110 000 000 00010 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.+. .+..+|++|.+ ....|.+.+ +++|.++|+++|+++|+|++|+. +.. ++-..
T Consensus 121 -~e~l~~~l~--------~~tklV~vesp-~NptG~v~d----l~~I~~la~~~gi~livD~t~a~----~~~--~~~~~ 180 (397)
T PRK05939 121 -VQNVAAAIR--------PNTRMVFVETI-ANPGTQVAD----LAGIGALCRERGLLYVVDNTMTS----PWL--FRPKD 180 (397)
T ss_pred -HHHHHHhCC--------CCCeEEEEECC-CCCCCCHHh----HHHHHHHHHHcCCEEEEECCccc----ccc--cCccc
Confidence 144665554 24668899987 777777755 99999999999999999999842 111 12222
Q ss_pred CCCcee--ecccccCC-CCCcceEEEec
Q 003472 680 CVPDIA--CYGKLLTG-GVIPLAATLAT 704 (817)
Q Consensus 680 v~PDiv--tlgK~Lgg-Gy~PlsAvl~s 704 (817)
...|++ .++|.++| | --++.+++.
T Consensus 181 ~gaDivv~S~sK~~~g~g-~~igg~v~~ 207 (397)
T PRK05939 181 VGASLVINSLSKYIAGHG-NALGGAVTD 207 (397)
T ss_pred cCCEEEEecCeecccCCC-CeEEEEEec
Confidence 346776 67899997 5 445555553
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=98.38 E-value=3e-05 Score=86.81 Aligned_cols=166 Identities=17% Similarity=0.211 Sum_probs=98.0
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch-hhhcCCCCcee---ecccccC-CC
Q 003472 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPDIA---CYGKLLT-GG 694 (817)
Q Consensus 620 iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a-~e~~gv~PDiv---tlgK~Lg-gG 694 (817)
...+|.-| +.=-|.+.+ .++|.++|+++++ +|+||+...|-..+..-. ....+-.+.++ +|||.+| .|
T Consensus 150 ~~~~l~nP--~NPTG~~~~----~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~G 222 (360)
T PRK07392 150 DGLLLNNP--HNPTGKLWS----REAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPG 222 (360)
T ss_pred CEEEEeCC--CCCCCCCcC----HHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCc
Confidence 45666777 455577775 4678888999986 666999988744442111 11122223443 7899999 89
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+-+|.+++++++++.+... ...++-+.++..++.+.|+ +.++.+.+.+..+..+ +.+.+.+++.
T Consensus 223 -lRiG~~v~~~~~~~~~~~~--------~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r----~~l~~~L~~~ 286 (360)
T PRK07392 223 -LRLGYAIAHPDRLQRWQQW--------RDPWPVNGLAAAAAIAALA---DRDFQQQTWAWLPPAR----EALFQGLASL 286 (360)
T ss_pred -hheeeeeCCHHHHHHHHhh--------CCCCCCCHHHHHHHHHHhc---cHHHHHHHHHHHHHHH----HHHHHHHHhC
Confidence 8999999999998877421 1246677888887777764 3223333333222222 2344555555
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv~ 816 (817)
+.+.-..+.|.++-+++.. ....+...++ ++||+
T Consensus 287 ~~~~~~~~~~~fl~~~~~~--------~~~~l~~~ll~~~gv~ 321 (360)
T PRK07392 287 PGLTPLPSAANFLLVQSQG--------SALQLQEKLLQQHRIL 321 (360)
T ss_pred CCcEECCCCCCEEEEEcCC--------CHHHHHHHHHhhCCEE
Confidence 5433233456676666532 1244555554 45763
|
|
| >cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=98.37 E-value=2e-05 Score=78.61 Aligned_cols=87 Identities=17% Similarity=0.122 Sum_probs=62.9
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhh-hCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC------
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYR-PFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV------ 292 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~-~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~------ 292 (817)
.+|+|||-+..++. .....+.+ ..---+|+|+....-++..+...++.+++.+.++.|+|+|++...
T Consensus 67 ~yD~VIiD~pp~~~------~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~~~~~~~ 140 (169)
T cd02037 67 ELDYLVIDMPPGTG------DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFVCPHCGK 140 (169)
T ss_pred CCCEEEEeCCCCCc------HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcccCCCCCC
Confidence 49999999977532 12223332 233558888888889999999999999999999999999997311
Q ss_pred --------CHHHHHHhhcCCCcEEe-cCCCC
Q 003472 293 --------NEVPLMSYLRNRVPVLV-LPPLP 314 (817)
Q Consensus 293 --------~~~~l~~~~~~~~pvlg-iP~~~ 314 (817)
..+.+.+.+ +.|++| ||+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~--~~~~~~~ip~~~ 169 (169)
T cd02037 141 KIYIFGKGGGEKLAEEL--GVPLLGKIPLDP 169 (169)
T ss_pred cccccCCccHHHHHHHc--CCCEEEeccCCC
Confidence 122333334 899999 99864
|
Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0001 Score=83.10 Aligned_cols=135 Identities=13% Similarity=0.130 Sum_probs=79.3
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCCCCCc
Q 003472 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIP 697 (817)
Q Consensus 620 iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~LggGy~P 697 (817)
..+|++.-+ +...|.+.+ +++|.++|+++|+++|+|++|. +|.. . .+.....+|+++++ |-+ | .|
T Consensus 141 t~lv~~~~~-~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~-~g~~--~--~~~~~~~~D~~~~s~~K~~--g-p~ 207 (382)
T TIGR03403 141 TALVSVMWA-NNETGMIFP----IKEIGEICKERGVLFHTDAVQA-IGKI--P--VDVQKAGVDFLSFSAHKFH--G-PK 207 (382)
T ss_pred CeEEEEEcc-cCCCccccC----HHHHHHHHHHcCCEEEEechhh-cCCC--c--cCccccCCCEEEEcchhhC--C-CC
Confidence 356777665 677888887 7899999999999999999985 4321 1 11122357999888 953 3 23
Q ss_pred -ceEEEechHHH--hhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 698 -LAATLATNAVF--DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 698 -lsAvl~s~~i~--d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|++.+++... ..+.+...... -..++-|..+..++.++++.+++ ..+...++.+.+.+++. +.+++.
T Consensus 208 G~g~l~vr~~~~~~p~~~g~~~~~~---~~~gt~~~~~~~al~~al~~~~~--~~~~~~~~~~~l~~~l~----~~L~~~ 278 (382)
T TIGR03403 208 GVGGLYIRKGVELTPLFHGGEHMGG---RRSGTLNVPYIVAMGEAMRLANE--YLDFEKSHVRRLRDRLE----DALLEL 278 (382)
T ss_pred ceEEEEECCCCCCCCcccCCCCCCC---cccCCcChHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHH----HHHhcC
Confidence 57777776531 11100000000 01344677777777788877654 13444455555555444 444444
Q ss_pred CC
Q 003472 775 RT 776 (817)
Q Consensus 775 p~ 776 (817)
|.
T Consensus 279 ~~ 280 (382)
T TIGR03403 279 PD 280 (382)
T ss_pred CC
Confidence 43
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.4e-05 Score=85.86 Aligned_cols=260 Identities=15% Similarity=0.105 Sum_probs=145.2
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCC-------hHHHHHHHHHHhhcCCCCcceEEEeCChHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-------EPALECAELLLQGVGKGWASRAYFSDNGST 472 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~-------~~~~eLae~L~~~~~~~~~~~v~f~~SGse 472 (817)
-|+|..+ +..+ +|++.+++...+... +.+.. ..| ....+.-+.+++++|.. -+.++|+++|+|
T Consensus 3 iYlD~~A---TTp~----~~~v~~~m~~~~~~~-fgNPs-S~H~~G~~A~~~ve~AR~~iA~llga~-~~eIiFTSG~TE 72 (386)
T COG1104 3 IYLDNAA---TTPV----DPEVLEAMLPYLTEV-FGNPS-SLHSFGREARKAVEEAREQIAKLLGAD-PEEIIFTSGATE 72 (386)
T ss_pred ccccccc---cCCC----CHHHHHHHHHHHHhh-cCCcc-chhHhHHHHHHHHHHHHHHHHHHhCCC-CCeEEEecCCcH
Confidence 5777665 2221 899999999988876 22211 122 23344555566677754 368999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCc
Q 003472 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (817)
Q Consensus 473 A~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (817)
+|-.|||-++..+..+ +.++.||+-. -=|=+...++.--. +. ++
T Consensus 73 snNlaI~g~~~a~~~~---------------~~~~HIIts~-iEH~aVl~~~~~Le----~~--------g~-------- 116 (386)
T COG1104 73 SNNLAIKGAALAYRNA---------------QKGKHIITSA-IEHPAVLNTCRYLE----RQ--------GF-------- 116 (386)
T ss_pred HHHHHHHhhHHhhhcc---------------cCCCeEEEcc-cccHHHHHHHHHHH----hc--------CC--------
Confidence 9999999763223221 1123444432 22322221111100 00 00
Q ss_pred ccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003472 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (817)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~ 632 (817)
+|+|-..+. . . ....+.|+++|+ ++...|-+=-+ ..+
T Consensus 117 ------------------------~Vtyl~V~~-~-------G--~v~~e~L~~al~--------~~T~LVSim~a-NnE 153 (386)
T COG1104 117 ------------------------EVTYLPVDS-N-------G--LVDLEQLEEALR--------PDTILVSIMHA-NNE 153 (386)
T ss_pred ------------------------eEEEeCCCC-C-------C--eEcHHHHHHhcC--------CCceEEEEEec-ccC
Confidence 111211110 0 0 001366777775 24556666666 888
Q ss_pred CCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeeccc-ccCCCCCcceEEEechHHHhhh
Q 003472 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK-LLTGGVIPLAATLATNAVFDSF 711 (817)
Q Consensus 633 gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK-~LggGy~PlsAvl~s~~i~d~~ 711 (817)
-|.+.| +++|-++|+++|++|-+|=|| ++|+.= .+.....-|+++||- .++|- =.+|++..++.+.-
T Consensus 154 ~G~IQp----I~ei~~i~k~~~i~fHvDAvQ-a~Gkip----i~~~~~~vD~ls~SaHK~~Gp-kGiGaLyv~~~~~~-- 221 (386)
T COG1104 154 TGTIQP----IAEIGEICKERGILFHVDAVQ-AVGKIP----IDLEELGVDLLSFSAHKFGGP-KGIGALYVRPGVRL-- 221 (386)
T ss_pred eeeccc----HHHHHHHHHHcCCeEEEehhh-hcCcee----ccccccCcceEEeehhhccCC-CceEEEEECCCCcc--
Confidence 899999 999999999999999999999 577652 122222379998854 56662 34678887665431
Q ss_pred cCCCccceeecccCCC-------CCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHH
Q 003472 712 VGDSKLKALLHGHSYS-------AHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELI 768 (817)
Q Consensus 712 ~~~~~~~~~~h~~T~~-------gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~ 768 (817)
.++.||+..- -|..+.++.-+++++..++ .+....+...++++|.+.+.
T Consensus 222 ------~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~--~~~~~~~~~~lr~~l~~~l~ 277 (386)
T COG1104 222 ------EPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEE--LEEENARLRKLRDRLEDGLL 277 (386)
T ss_pred ------CceeccCcCCCCCCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 2234444332 2555566555666665331 12223344455555554444
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00022 Score=81.06 Aligned_cols=178 Identities=12% Similarity=0.089 Sum_probs=97.8
Q ss_pred EEEEE-ccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCc--ee---ecccccC-C
Q 003472 621 GALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD--IA---CYGKLLT-G 693 (817)
Q Consensus 621 AAvIv-EPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PD--iv---tlgK~Lg-g 693 (817)
.+|++ -| +.-.|.+. +.+-+++|.++|+++|+++|+||+...|-..|..+. ....+.|+ ++ +|||.++ .
T Consensus 170 ~~v~~~~p--~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~vi~~~SfSK~~~~~ 245 (401)
T TIGR01264 170 AALIVNNP--SNPCGSVF-SRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFE-PLASLSSTVPILSCGGLAKRWLVP 245 (401)
T ss_pred eEEEEcCC--CCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccc-cHHHcCCCCcEEEEccCcccCCCc
Confidence 34444 55 44456554 788899999999999999999999987743442111 11122333 33 8899844 4
Q ss_pred CCCcceEEEech------HHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHH
Q 003472 694 GVIPLAATLATN------AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (817)
Q Consensus 694 Gy~PlsAvl~s~------~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l 767 (817)
| +=+|.+++.+ ++++.+.. ....+++.++++..++.+.|+-. .++..++..+..+..++ .+
T Consensus 246 G-lRiG~iv~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~a~~~~l~~~-~~~~l~~~~~~~~~~r~----~l 312 (401)
T TIGR01264 246 G-WRLGWIIIHDRRGILRDIRDGLVK-------LSQRILGPCTIVQGALPSILLRT-PQEYFDGTLSVLESNAM----LC 312 (401)
T ss_pred c-ceEEEEEecCcchhHHHHHHHHHH-------HhhccCCCCcHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHH----HH
Confidence 6 6788888763 33333321 01123455777777776776431 12222333333332233 34
Q ss_pred HHHHHcCCCcceE-EeeeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCCC
Q 003472 768 IQQISSHRTVQRV-VALGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 768 ~~~l~~~p~V~~V-rG~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv~ 816 (817)
.+.++++|.+.-+ ..-|+++-+++.... ..+......+...++ ++||+
T Consensus 313 ~~~L~~~~~~~~~~p~~g~f~~~~~~~~~-~~~~~~~~~~~~~l~~~~gI~ 362 (401)
T TIGR01264 313 YGALAAVPGLRPVMPSGAMYMMVGIEMEH-FPEFKNDVEFTERLVAEQSVF 362 (401)
T ss_pred HHHHHhCCCCcccCCCeeeEEEEEecccc-cCCCCCHHHHHHHHHHhCCEE
Confidence 4455555433222 335888888875421 011122355666666 67874
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-05 Score=91.53 Aligned_cols=162 Identities=15% Similarity=0.092 Sum_probs=96.3
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.+. +.+++++||.+|+.+|+.... ..| ..||+....|+|.
T Consensus 66 ~~~pt~~~le~~la~l~g~---~~~v~fsSG~~Ai~~al~~ll-----~~G----------------d~VI~~~~~y~~t 121 (437)
T PRK05613 66 LTNPTVEALENRIASLEGG---VHAVAFASGQAAETAAILNLA-----GAG----------------DHIVTSPRLYGGT 121 (437)
T ss_pred ccChHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHhc-----CCC----------------CEEEECCCccHHH
Confidence 4578888999999998873 588999999999998886541 111 2577666666653
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
.......- . + .|.- +..++.| +|
T Consensus 122 ~~~~~~~l--~--~----------~Gi~-----------v~~vd~~---------------~d----------------- 144 (437)
T PRK05613 122 ETLFLVTL--N--R----------LGIE-----------VTFVENP---------------DD----------------- 144 (437)
T ss_pred HHHHHHHH--H--h----------cCeE-----------EEEECCC---------------CC-----------------
Confidence 11100000 0 0 0000 0001000 01
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.+. .++.+|++|.. ..--|.+.+ +++|.++|+++|+++|+|.+|. .|.. .---.+|
T Consensus 145 -~e~l~~~l~--------~~tk~V~~e~~-~Np~~~v~d----i~~I~~la~~~gi~livD~t~a-~g~~---~~p~~~G 206 (437)
T PRK05613 145 -PESWQAAVQ--------PNTKAFFGETF-ANPQADVLD----IPAVAEVAHRNQVPLIVDNTIA-TAAL---VRPLELG 206 (437)
T ss_pred -HHHHHHhCC--------ccCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCeEEEECCCc-cccc---cChHHhC
Confidence 144666654 23567888876 444456666 9999999999999999999994 3222 1111234
Q ss_pred CCCceee--cccccCC-CCCcceEEEe
Q 003472 680 CVPDIAC--YGKLLTG-GVIPLAATLA 703 (817)
Q Consensus 680 v~PDivt--lgK~Lgg-Gy~PlsAvl~ 703 (817)
.|+++ +-|-++| | --++++++
T Consensus 207 --aDivv~S~~K~l~G~g-d~~gG~vv 230 (437)
T PRK05613 207 --ADVVVASLTKFYTGNG-SGLGGVLI 230 (437)
T ss_pred --CCEEEeeccceecCCC-cceeEEEE
Confidence 48885 4688876 4 23444444
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.3e-06 Score=92.22 Aligned_cols=249 Identities=18% Similarity=0.139 Sum_probs=144.6
Q ss_pred CCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccC
Q 003472 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (817)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG 518 (817)
...++....|+++|+++-+ .+.++.++||-.|+-+++....+ + -..||..+..|+|
T Consensus 51 R~gnPt~~~le~~la~Le~---g~~a~~~~SGmaAi~~~l~~ll~--------------------~-Gd~iv~~~~~Y~~ 106 (386)
T PF01053_consen 51 RYGNPTVRALEQRLAALEG---GEDALLFSSGMAAISAALLALLK--------------------P-GDHIVASDDLYGG 106 (386)
T ss_dssp TTC-HHHHHHHHHHHHHHT----SEEEEESSHHHHHHHHHHHHS---------------------T-TBEEEEESSSSHH
T ss_pred ccccccHHHHHHHHHHhhc---ccceeeccchHHHHHHHHHhhcc--------------------c-CCceEecCCccCc
Confidence 4557889999999999877 36899999999999888876521 1 1368999999988
Q ss_pred CccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHH
Q 003472 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (817)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~ 598 (817)
.....-.. ....|. . +.|-|.. +
T Consensus 107 t~~~~~~~--------------l~~~gv--------------~----------------v~~~d~~----------d--- 129 (386)
T PF01053_consen 107 TYRLLEEL--------------LPRFGV--------------E----------------VTFVDPT----------D--- 129 (386)
T ss_dssp HHHHHHHC--------------HHHTTS--------------E----------------EEEESTT----------S---
T ss_pred chhhhhhh--------------hcccCc--------------E----------------EEEeCch----------h---
Confidence 32111000 000010 0 1122210 0
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcC-CcEEEeeeeeccccccccchhhh
Q 003472 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK-IPVIFDEVFTGFWRLGVETTADL 677 (817)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~G-ilLI~DEV~TGfGRtG~~~a~e~ 677 (817)
.+.+++.++ .++.+|++|+. ..--.-++. ++++.++|+++| +++|+|...... ..++-
T Consensus 130 --~~~l~~~l~--------~~t~~v~~Esp-sNP~l~v~D----l~~i~~~a~~~g~~~~vVDnT~atp------~~~~p 188 (386)
T PF01053_consen 130 --LEALEAALR--------PNTKLVFLESP-SNPTLEVPD----LEAIAKLAKEHGDILVVVDNTFATP------YNQNP 188 (386)
T ss_dssp --HHHHHHHHC--------TTEEEEEEESS-BTTTTB-------HHHHHHHHHHTTT-EEEEECTTTHT------TTC-G
T ss_pred --HHHHHhhcc--------ccceEEEEEcC-CCccccccc----HHHHHHHHHHhCCceEEeeccccce------eeecc
Confidence 256777775 27899999997 443333343 899999999999 999999998421 22333
Q ss_pred cCCCCcee--ecccccCC-CCCcceEEEech--HHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcH
Q 003472 678 LGCVPDIA--CYGKLLTG-GVIPLAATLATN--AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (817)
Q Consensus 678 ~gv~PDiv--tlgK~Lgg-Gy~PlsAvl~s~--~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l 752 (817)
+..-.||+ -+.|-++| |=+-.|+++++. ++++.+.... ...|.+ ..|..|...+..|+-+.- ..++.
T Consensus 189 L~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~----~~~G~~--~~p~da~ll~rgl~Tl~~--R~~~~ 260 (386)
T PF01053_consen 189 LELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFR----RLLGAT--LSPFDAWLLLRGLRTLPL--RMERQ 260 (386)
T ss_dssp GGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHH----HHHT-B----HHHHHHHHHHHTTHHH--HHHHH
T ss_pred CcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchh----hhcCcc--chHHHHHHHhcCCCcHHH--HHHHH
Confidence 33347887 56898986 324456666554 6666553210 012222 245555554444444321 12344
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcceEE------------------eeeeEEEEEEecCCCCCCcchHHHHHHHH
Q 003472 753 IPERRILRELWDLELIQQISSHRTVQRVV------------------ALGTLCAIELQAAGCNAGYCLIELFLYNF 810 (817)
Q Consensus 753 ~~~~~~lg~~l~~~l~~~l~~~p~V~~Vr------------------G~Glm~gIel~~~~~~~~~~~~~~~~~~~ 810 (817)
.+++..+ .+.+++||.|..|. |.|-|++|+|.... +....|+..+
T Consensus 261 ~~nA~~l--------A~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~-----~~~~~f~~~l 323 (386)
T PF01053_consen 261 NENAEAL--------AEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGE-----EAARRFLDAL 323 (386)
T ss_dssp HHHHHHH--------HHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHH-----HHHHHHHHH-
T ss_pred HHHHHHH--------HHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccch-----hhhHhHHhhh
Confidence 4444443 44567888888877 66679999998762 3555555544
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00011 Score=83.79 Aligned_cols=314 Identities=11% Similarity=0.047 Sum_probs=158.8
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhc--cccCCCCCCChHHHHHHHHHHhhcCCC-Ccc-eEEEeCChHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF--GHVMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIE 475 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~--~~~~~~~~~~~~~~eLae~L~~~~~~~-~~~-~v~f~~SGseA~E 475 (817)
.++|+..|.. -+.. .+.+.+++.+.+... ..+....+..+....+++.+.+..+-. ..+ .+++++++.+|..
T Consensus 34 ~~~~l~~g~p---~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~ 109 (403)
T PRK08636 34 DIIDFSMGNP---DGPT-PQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYV 109 (403)
T ss_pred CEEEcCCcCC---CCCC-CHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHH
Confidence 6777766422 2333 566777777655431 111112233455667777776643311 124 5889999999888
Q ss_pred HHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccc
Q 003472 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (817)
Q Consensus 476 ~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (817)
.++++.. . ....|+.-+-+|-+-... ....|..
T Consensus 110 ~~~~~l~-----~----------------~gd~Vlv~~P~y~~~~~~-~~~~g~~------------------------- 142 (403)
T PRK08636 110 HLVQAIT-----N----------------PGDVAIVPDPAYPIHSQA-FILAGGN------------------------- 142 (403)
T ss_pred HHHHHhC-----C----------------CCCEEEEcCCCCcchHHH-HHhcCCE-------------------------
Confidence 8887651 1 123677777777653221 1121111
Q ss_pred cCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCC
Q 003472 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGG 634 (817)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvE-PV~qg~gG 634 (817)
.+++|-.. ++ .+. -|. +...+.+++.+++ ...++.++++- | +.=.|
T Consensus 143 -----~~~v~~~~------------~~---~~~--~d~----~~l~~~l~~~~~~-----~~~~~~~i~~~~P--~NPTG 189 (403)
T PRK08636 143 -----VHKMPLEY------------NE---DFE--LDE----DQFFENLEKALRE-----SSPKPKYVVVNFP--HNPTT 189 (403)
T ss_pred -----EEEEeccc------------cc---cCc--cCh----hhhhhHHHHHHhh-----ccCCceEEEEeCC--CCCCC
Confidence 11111000 00 000 000 1112445666653 22344455544 6 34445
Q ss_pred cccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-chhhhcCCCCcee----ecccccC-CCCCcceEEEechHHH
Q 003472 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA----CYGKLLT-GGVIPLAATLATNAVF 708 (817)
Q Consensus 635 ~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a~e~~gv~PDiv----tlgK~Lg-gGy~PlsAvl~s~~i~ 708 (817)
.+. +.+-+++|.++|++|++++|.||+...+--.+.. -....+.-.+|.+ ++||.+| .| +-+|.++++++++
T Consensus 190 ~~~-s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~iv~~~~li 267 (403)
T PRK08636 190 ATV-EKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAG-WRVGFVVGNKKLV 267 (403)
T ss_pred ccC-CHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCcc-ceeeeeeCCHHHH
Confidence 555 7888999999999999999999998655211211 1111111123432 5899996 68 7999999999998
Q ss_pred hhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEE-eeeeEE
Q 003472 709 DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV-ALGTLC 787 (817)
Q Consensus 709 d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~Vr-G~Glm~ 787 (817)
+.+..- .....++.+.+..+++..+++- .++..+++.+.-+...+ .+.+.+++++ +.-++ .-|+++
T Consensus 268 ~~~~~~------~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~----~l~~~L~~~~-~~~~~p~~g~~~ 334 (403)
T PRK08636 268 GALKKI------KSWLDYGMFTPIQVAATIALDG--DQSCVEEIRETYRKRRD----VLIESFANAG-WELQKPRASMFV 334 (403)
T ss_pred HHHHHH------HHHhcccCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHH----HHHHHHHHCC-CcccCCCcceEE
Confidence 877431 1112234444444444444321 12222233222222222 2344444443 22222 357788
Q ss_pred EEEEecCCCCCCcchHHHHHHHHH-HcCC
Q 003472 788 AIELQAAGCNAGYCLIELFLYNFL-TTGM 815 (817)
Q Consensus 788 gIel~~~~~~~~~~~~~~~~~~~l-~~Gv 815 (817)
-+.+.+.. .. .....+...++ ++||
T Consensus 335 ~~~l~~~~--~~-~~~~~l~~~ll~~~gV 360 (403)
T PRK08636 335 WAKIPEPA--RH-LGSLEFSKQLLTEAKV 360 (403)
T ss_pred EEECCCcc--CC-CCHHHHHHHHHHhCCE
Confidence 88875421 00 12345665655 4675
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.5e-06 Score=92.56 Aligned_cols=146 Identities=14% Similarity=0.121 Sum_probs=85.2
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCCCC-
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGV- 695 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~LggGy- 695 (817)
++.+|++|-. ....|.+.+ +++|.++|+++|+++|+|+++. .+-.... .+...|++ ...|.++|.-
T Consensus 131 ~tklv~le~p-snptg~v~d----l~~I~~la~~~g~~vivD~a~~-~~~~~~~-----l~~g~Di~v~S~tK~l~G~~~ 199 (378)
T TIGR01329 131 KTKLVLLESP-TNPLQKIVD----IRKISEMAHAQNALVVVDNTMM-SPLLCNP-----LELGADIVYHSATKFLAGHSD 199 (378)
T ss_pred CceEEEEECC-CCCCCeeec----HHHHHHHHHHcCCEEEEECCCc-ccccCCh-----hhcCCcEEEEecceeccCCcc
Confidence 5678999976 676777776 9999999999999999999983 2222111 12245887 5689887621
Q ss_pred CcceEEEec-hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 696 IPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 696 ~PlsAvl~s-~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+-.|+++++ +++.+.+.. .........+|..|+.++..|+.+. ...++-.+++..+.++|. +|
T Consensus 200 ~~~G~v~~~~~~~~~~~~~------~~~~~G~~~~~~~a~l~~~~l~tl~--~R~e~~~~na~~la~~L~--------~~ 263 (378)
T TIGR01329 200 VMAGVLAVKGEEIAKKVYF------LQNSTGSGLAPFDCWLLLRGIKTLA--IRIEKQQENARAIAMFLS--------TH 263 (378)
T ss_pred ceeEEEEeCcHHHHHHHHH------HHHhcCCcCCHHHHHHHHccCCCHH--HHHHHHHHHHHHHHHHHH--------hC
Confidence 224555564 444344421 0111123356777765444443331 123444455555554333 33
Q ss_pred CCcceE------------------EeeeeEEEEEE
Q 003472 775 RTVQRV------------------VALGTLCAIEL 791 (817)
Q Consensus 775 p~V~~V------------------rG~Glm~gIel 791 (817)
|.|..| .|.|-|+.|++
T Consensus 264 ~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~ 298 (378)
T TIGR01329 264 PRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFET 298 (378)
T ss_pred CCccEEECCCCCCCccHHHHHHhCCCcceEEEEEE
Confidence 333222 46788999999
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.5e-05 Score=85.68 Aligned_cols=166 Identities=14% Similarity=0.175 Sum_probs=92.6
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhc-CCcEEEeeeeeccccccccchhhhcCCCC-cee--ecccccC-CCC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNR-KIPVIFDEVFTGFWRLGVETTADLLGCVP-DIA--CYGKLLT-GGV 695 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~-GilLI~DEV~TGfGRtG~~~a~e~~gv~P-Div--tlgK~Lg-gGy 695 (817)
..++.-| +.-.|.+.+ .++++++|+.+ ++++|+||++..|+. .. .....+..+ .++ +++|.+| .|
T Consensus 147 ~v~~~~P--~NPtG~~~~----~~~~~~l~~~~~~~~livDe~y~~~~~--~~-~~~~~~~~~~~i~~~S~SK~~~~~G- 216 (353)
T PRK05387 147 GIIFPNP--NAPTGIALP----LAEIERILAANPDSVVVIDEAYVDFGG--ES-AIPLIDRYPNLLVVQTFSKSRSLAG- 216 (353)
T ss_pred EEEEeCC--CCCCCCCCC----HHHHHHHHHhCCCcEEEEeCcccccCC--cc-hHHHHhhCCCEEEEEehhHhhcchh-
Confidence 3567777 455567665 44445555443 999999999976642 11 111111123 333 6899998 67
Q ss_pred CcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 696 ~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
+-+|.+++++++.+.+.... ....+++.++++.+++.++|+ +.+..++..++.....+. +.+.+++++
T Consensus 217 lR~G~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~----l~~~L~~~g 284 (353)
T PRK05387 217 LRVGFAIGHPELIEALNRVK-----NSFNSYPLDRLAQAGAIAAIE---DEAYFEETRAKVIATRER----LVEELEALG 284 (353)
T ss_pred hhceeeecCHHHHHHHHHhh-----ccCCCCCcCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHH----HHHHHHHCC
Confidence 67888999999988874321 112356677777777766663 222233333333333332 334444444
Q ss_pred CcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 776 TVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 776 ~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
. .-....|.++-+.+.. .....+...+.++||+
T Consensus 285 ~-~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~ 317 (353)
T PRK05387 285 F-EVLPSKANFVFARHPS-------HDAAELAAKLRERGII 317 (353)
T ss_pred C-eECCCcCcEEEEECCC-------CCHHHHHHHHHHCCEE
Confidence 2 1112234455454431 2345677788888874
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00011 Score=83.68 Aligned_cols=244 Identities=12% Similarity=0.011 Sum_probs=136.0
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhcc-ccCCCCCCChHHHHHHHHHHhhcCCC-CcceEEEeCChHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~~~~v~f~~SGseA~E~A 477 (817)
..+|+..|.. .++ . +|.+.+++.+.+++.. .+....+..+....+++.+.+..+.. ..+.+.+++++++|+..+
T Consensus 34 ~~i~l~~g~p--~~~-~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~ 109 (402)
T PRK06107 34 SIVDLTVGEP--DFD-T-PDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLA 109 (402)
T ss_pred CEEEcCCCCC--CCC-C-CHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHH
Confidence 4566655432 222 2 6889999998886422 12222234456677888887765431 124688999999999999
Q ss_pred HHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccC
Q 003472 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (817)
Q Consensus 478 lklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (817)
++... + . ...|+.-+-+|.+.. ..+...+..
T Consensus 110 ~~~~~----~-~----------------gd~vl~~~p~y~~y~-~~~~~~~~~--------------------------- 140 (402)
T PRK06107 110 LMATL----E-A----------------GDEVIIPAPYWVSYP-DMVLANDGT--------------------------- 140 (402)
T ss_pred HHHhc----C-C----------------CCEEEEecCCCcCHH-HHHHHcCCE---------------------------
Confidence 86541 1 1 125666665555421 111111100
Q ss_pred cceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCccc
Q 003472 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (817)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~ 637 (817)
...++.+... .|+ + + .+.+++.+. +...+.++.-| +.--|...
T Consensus 141 -~~~v~~~~~~----------~~~-~--------~--------~~~l~~~~~-------~~~~~v~l~~p--~NPtG~~~ 183 (402)
T PRK06107 141 -PVIVACPEEQ----------GFK-L--------T--------PEALEAAIT-------PRTRWLILNAP--SNPTGAVY 183 (402)
T ss_pred -EEEecCCccc----------CCC-C--------C--------HHHHHhhcC-------cCceEEEEECC--CCCCCcCc
Confidence 0001110000 000 0 0 134555443 22233444445 34445544
Q ss_pred CCHHHHHHHHHHHhhc-CCcEEEeeeeeccccccccc-hhhhc--CCCCcee---ecccccC-CCCCcceEEEechHHHh
Q 003472 638 VDPLFQRILVKECQNR-KIPVIFDEVFTGFWRLGVET-TADLL--GCVPDIA---CYGKLLT-GGVIPLAATLATNAVFD 709 (817)
Q Consensus 638 pp~~yl~~Lr~Lc~~~-GilLI~DEV~TGfGRtG~~~-a~e~~--gv~PDiv---tlgK~Lg-gGy~PlsAvl~s~~i~d 709 (817)
+.+-++++.++|+++ |+++|+||+...+.-.+..+ ..... +....++ .++|.+| .| +=+|.+++++++.+
T Consensus 184 -s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG-lRiG~~~~~~~~~~ 261 (402)
T PRK06107 184 -SRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTG-WRIGYAAGPADLIA 261 (402)
T ss_pred -CHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcc-cceeeeecCHHHHH
Confidence 788899999999998 99999999997552223211 11111 1222344 5699997 78 68888999999998
Q ss_pred hhcCCCccceeecccCCCCCHHHHHHHHHHHH
Q 003472 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIK 741 (817)
Q Consensus 710 ~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~ 741 (817)
.+... ....++..+.++.+++.+.|+
T Consensus 262 ~~~~~------~~~~~~~~s~~~q~~~~~~l~ 287 (402)
T PRK06107 262 AINKL------QSQSSSCPSSISQAAAAAALN 287 (402)
T ss_pred HHHHH------HHhcccCCChHHHHHHHHHhc
Confidence 87531 122345667777777766663
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.8e-05 Score=83.84 Aligned_cols=175 Identities=13% Similarity=0.096 Sum_probs=94.3
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCC--c-ee---ecccccC-CC
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP--D-IA---CYGKLLT-GG 694 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~P--D-iv---tlgK~Lg-gG 694 (817)
.+|.-| +.=-|.+. +.+-+++|.++|++||+++|.||+..-|--.+...........+ + ++ +|||.+| .|
T Consensus 169 i~l~~p--~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~G 245 (388)
T PRK07366 169 MVLSYP--HNPTTAIA-PLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGG 245 (388)
T ss_pred EEEeCC--CCCCCccC-CHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcc
Confidence 344444 55557655 78889999999999999999999987662222210011111222 2 22 8999997 67
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+=+|.+++++++++.+.... ...+++..+....++.+++. +.++..+++.+..+..++ .+.+.++++
T Consensus 246 -lRiG~~v~~~~li~~l~~~~------~~~~~~~~~~~~~~a~~~l~--~~~~~l~~~~~~~~~~r~----~l~~~L~~~ 312 (388)
T PRK07366 246 -FRIGFAIGNAQLIQALRQVK------AVVDFNQYRGILNGAIAALT--GPQATVQQTVQIFRQRRD----AFINALHQI 312 (388)
T ss_pred -hhheehcCCHHHHHHHHHHH------hhcccCCCHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHH----HHHHHHHHC
Confidence 78888999999988774311 11122222323344455542 222222333333333333 234445555
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv~ 816 (817)
+.......-|+++-+++.+.- . .....+...++ ++||.
T Consensus 313 ~~~~~~p~~g~f~~~~~~~~~---~-~~~~~~~~~l~~~~gv~ 351 (388)
T PRK07366 313 GWPVPLPEATMYVWAKLPEPW---Q-GNSVEFCTQLVAQTGVA 351 (388)
T ss_pred CCcccCCCeeEEEEEECCccc---C-CCHHHHHHHHHHhCCEE
Confidence 432122345778888775420 0 11244555554 55763
|
|
| >TIGR01968 minD_bact septum site-determining protein MinD | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.2e-05 Score=85.29 Aligned_cols=102 Identities=11% Similarity=0.161 Sum_probs=71.2
Q ss_pred ChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHH
Q 003472 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (817)
Q Consensus 193 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (817)
..+.+.+.++.+.+. +|+|||.+.+|+..+. .......+ -||+|+.....++.++...++
T Consensus 97 ~~~~l~~~l~~l~~~-------------~D~viiD~p~~~~~~~------~~~l~~aD-~viiv~~~~~~s~~~~~~~~~ 156 (261)
T TIGR01968 97 TPEQMKKLVNELKEE-------------FDYVIIDCPAGIESGF------RNAVAPAD-EAIVVTTPEVSAVRDADRVIG 156 (261)
T ss_pred CHHHHHHHHHHHHHh-------------CCEEEEeCCCCcCHHH------HHHHHhCC-eEEEEcCCCcHHHHHHHHHHH
Confidence 344566666665544 9999999988765432 11122222 388899999999999999999
Q ss_pred HHHhCCCcEEEEEEccCCCC--------CHHHHHHhhcCCCcEEe-cCCCCCC
Q 003472 273 SLKLRGYDVVAVVFEDHGLV--------NEVPLMSYLRNRVPVLV-LPPLPQD 316 (817)
Q Consensus 273 ~l~~~~~~v~gvi~n~~~~~--------~~~~l~~~~~~~~pvlg-iP~~~~~ 316 (817)
.+...+..-.++|+|++... ..+.+++.+ +.|+++ ||+....
T Consensus 157 ~l~~~~~~~~~iviN~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Ip~~~~~ 207 (261)
T TIGR01968 157 LLEAKGIEKIHLIVNRLRPEMVKKGDMLSVDDVLEIL--SIPLIGVIPEDEAI 207 (261)
T ss_pred HHHHcCCCceEEEEeCcCchhcccccccCHHHHHHHh--CCceeEEccCCHHH
Confidence 99887766689999997321 234556666 889999 9987654
|
This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model. |
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00026 Score=80.83 Aligned_cols=199 Identities=14% Similarity=0.036 Sum_probs=113.1
Q ss_pred CHHHHHHHHHHHHhc--cccCCCCCCChHHHHHHHHHHhhcCCC-CcceEEEeCChHHHHHHHHHHHHHHhhcccccccc
Q 003472 418 QIELARDMGYTAARF--GHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~--~~~~~~~~~~~~~~eLae~L~~~~~~~-~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~ 494 (817)
.|.+.+|+.+.++.. ..+....+..+....+++.+....+.+ .-+.+++++++++|...+++... ..
T Consensus 51 p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~-----~~----- 120 (409)
T PLN00143 51 TNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLA-----RP----- 120 (409)
T ss_pred CHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHc-----CC-----
Confidence 677889888877642 222222334556666777776532211 02579999999999998888661 11
Q ss_pred ccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccc
Q 003472 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (817)
Q Consensus 495 ~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~ 574 (817)
...|+...-+|.+-...+ ...|.. .+.+|-..
T Consensus 121 -----------gd~v~v~~P~y~~~~~~~-~~~g~~------------------------------~~~~~~~~------ 152 (409)
T PLN00143 121 -----------EANILLPRPGFPDVETYA-IFHHLE------------------------------IRHFDLLP------ 152 (409)
T ss_pred -----------CCEEEEcCCCCcCHHHHH-HHcCCE------------------------------EEEEeccC------
Confidence 136777777776532111 111110 00000000
Q ss_pred cccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcC
Q 003472 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (817)
Q Consensus 575 ~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~G 654 (817)
-++ +. -| .+.+++.++ ....+.+++-| +.--|.+. +.+-+++|.++|++|+
T Consensus 153 -----~~~----~~--~d--------~~~l~~~~~-------~~~~~~~~~nP--~NPTG~~~-s~~~~~~l~~~a~~~~ 203 (409)
T PLN00143 153 -----EKG----WE--VD--------LDAVEAIAD-------ENTIAMVIINP--GNPCGSVY-SYEHLNKIAETARKLG 203 (409)
T ss_pred -----CCC----Cc--CC--------HHHHHHhcc-------cCCEEEEEECC--CCCCCCcc-CHHHHHHHHHHHHHcC
Confidence 000 00 00 244555543 23456778888 44456665 7888999999999999
Q ss_pred CcEEEeeeeeccccccccc-hhhhcCCCCcee---eccccc-CCCCCcceEEEec
Q 003472 655 IPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLL-TGGVIPLAATLAT 704 (817)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~-a~e~~gv~PDiv---tlgK~L-ggGy~PlsAvl~s 704 (817)
+++|.||+...|-..|..+ ....+.-.+.++ +|||.+ ..| +-+|.+++.
T Consensus 204 ~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pG-lRvG~~v~~ 257 (409)
T PLN00143 204 ILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPG-WGLGWLVTC 257 (409)
T ss_pred CeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCc-cceEEEEee
Confidence 9999999998763333211 111122122233 789994 457 788889883
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.6e-05 Score=89.51 Aligned_cols=58 Identities=17% Similarity=0.159 Sum_probs=42.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T 664 (817)
+.|++.+.+ .+..++++|+++--....||. +.+.+.+++++++|++||+++|.|+++.
T Consensus 139 e~Le~~I~~----~~~~~~~~I~v~~p~N~~gG~-~~s~~~l~~i~eia~~~gi~li~DaAr~ 196 (431)
T cd00617 139 AKLEKLIDE----VGAENIPYIVLTITNNTAGGQ-PVSMANLREVRELAHKYGIPVVLDAARF 196 (431)
T ss_pred HHHHHHhCc----ccCCCccEEEEECCcCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEEchhh
Confidence 667777763 224567888887321333564 5589999999999999999999999974
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00042 Score=79.77 Aligned_cols=216 Identities=14% Similarity=0.014 Sum_probs=117.0
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccc--cCCCCCCChHHHHHHHHHHhhcCCC-CcceEEEeCChHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEI 476 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~~~~-~~~~v~f~~SGseA~E~ 476 (817)
.+|++..|--...-.....|++.+|+.++++.... +....+..+....+++.+....+.+ .-+.+++++++++|+..
T Consensus 53 ~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l 132 (430)
T PLN00145 53 PVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEI 132 (430)
T ss_pred CeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHH
Confidence 66766554222211233256888999888765322 1111233445556666665432211 02579999999999998
Q ss_pred HHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCccccc
Q 003472 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (817)
Q Consensus 477 AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (817)
+++... ..| ..|+.-+-+|......+ ...|..
T Consensus 133 ~~~~l~-----~~G----------------d~Vlv~~P~y~~y~~~~-~~~g~~-------------------------- 164 (430)
T PLN00145 133 IMSVLA-----QPG----------------ANILLPRPGYPLYEARA-VFSGLE-------------------------- 164 (430)
T ss_pred HHHHhc-----CCC----------------CEEEEcCCCCccHHHHH-HHcCCE--------------------------
Confidence 888761 111 25777766776522111 111110
Q ss_pred CcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcc
Q 003472 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (817)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~ 636 (817)
+..++.+.. ++ +. -| .+.+++.+. ....+.+|+-|- .--|.+
T Consensus 165 --~~~~~~~~~-------------~~----~~--~d--------~~~l~~~~~-------~~~~~i~i~~P~--NPtG~v 206 (430)
T PLN00145 165 --VRHFDLLPE-------------RG----WE--VD--------LEGVEALAD-------ENTVAMVIINPN--NPCGSV 206 (430)
T ss_pred --EEEeeCCcc-------------cC----Cc--CC--------HHHHHHHhC-------cCceEEEEeCCC--CCCCCC
Confidence 000110000 00 00 00 245555554 245677888883 444654
Q ss_pred cCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc-hhhhcCCCCcee---eccccc-CCCCCcceEEEe
Q 003472 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLL-TGGVIPLAATLA 703 (817)
Q Consensus 637 ~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~-a~e~~gv~PDiv---tlgK~L-ggGy~PlsAvl~ 703 (817)
. +.+-+++|.++|+++|+++|.||+...|---+..+ ....++-...++ .|||.. .-| +=+|.+++
T Consensus 207 ~-~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG-~RlG~iv~ 276 (430)
T PLN00145 207 Y-SYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPG-WRLGWIAT 276 (430)
T ss_pred C-CHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCC-eeEEEEEE
Confidence 4 78889999999999999999999987652222211 111122122233 789994 457 67888886
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0001 Score=80.90 Aligned_cols=184 Identities=16% Similarity=0.096 Sum_probs=112.8
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alk 479 (817)
.+||+..+. +.+ . +|.+.+|+.+.++....+ +....|.+.+++..+ +.++.+++++||...++.
T Consensus 9 ~~i~l~~~~--np~--~-p~~~~~a~~~~~~~~~~y-------p~~~~l~~~ia~~~~----~~I~vt~G~~~al~~~~~ 72 (311)
T PRK08354 9 GLIDFSASV--NPY--P-PEWLDEMFERAKEISGRY-------TYYEWLEEEFSKLFG----EPIVITAGITEALYLIGI 72 (311)
T ss_pred ceeEecCCC--CCC--C-CHHHHHHHHHHHHHhhcC-------CChHHHHHHHHHHHC----CCEEECCCHHHHHHHHHH
Confidence 688888742 333 5 789999998776543211 123567788888776 368899999999887664
Q ss_pred HHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcc
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (817)
+. . .| .+|+..+-+|.+-...+ ...|..
T Consensus 73 ~~-----~-~g----------------d~vlv~~P~y~~~~~~~-~~~g~~----------------------------- 100 (311)
T PRK08354 73 LA-----L-RD----------------RKVIIPRHTYGEYERVA-RFFAAR----------------------------- 100 (311)
T ss_pred hh-----C-CC----------------CeEEEeCCCcHHHHHHH-HHcCCE-----------------------------
Confidence 33 1 11 25666666665532111 111110
Q ss_pred eeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp 639 (817)
.+..| .| .+.+++.++ ..+ ..+++-| +.--|.+. +
T Consensus 101 -~~~~~---------------~d------------------~~~l~~~~~-------~~~-~vi~~~P--~NPTG~~~-~ 135 (311)
T PRK08354 101 -IIKGP---------------ND------------------PEKLEELVE-------RNS-VVFFCNP--NNPDGKFY-N 135 (311)
T ss_pred -EeecC---------------CC------------------HHHHHHhhc-------CCC-EEEEecC--CCCCCCcc-C
Confidence 00000 00 133444443 122 4777788 34556655 7
Q ss_pred HHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCCcceEEEe
Q 003472 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLA 703 (817)
Q Consensus 640 ~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~PlsAvl~ 703 (817)
.+-+++|.++|+++|+++|.||+...|..-+.. .. .+.++ +|||.+| .| +-+|.+++
T Consensus 136 ~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~-----~~-~~~vi~~~S~SK~~~l~G-lRiG~~v~ 196 (311)
T PRK08354 136 FKELKPLLDAVEDRNALLILDEAFIDFVKKPES-----PE-GENIIKLRTFTKSYGLPG-IRVGYVKG 196 (311)
T ss_pred HHHHHHHHHHhhhcCcEEEEeCcchhccccccc-----cC-CCcEEEEeccHhhcCCcc-ceeeeeee
Confidence 889999999999999999999999877322211 11 22222 7899998 78 78888887
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.9e-05 Score=84.18 Aligned_cols=164 Identities=12% Similarity=0.061 Sum_probs=99.8
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~ 696 (817)
..+++-|- .=-|.+. +.+-+++|.++|+++|+++|.||+...+....... .+.-.+.++ +|||.+| .| +
T Consensus 127 ~v~l~nP~--NPTG~~~-s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~---~~~~~~~vi~~~SfSK~~gl~G-l 199 (330)
T PRK05664 127 VLVVVNPN--NPTGRRF-DPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLA---ACAHRPGLIVLRSFGKFFGLAG-A 199 (330)
T ss_pred EEEEeCCc--CCCCCcc-CHHHHHHHHHHHHhcCCEEEEECCcccCCCccccc---ccccCCCEEEEeeccccccCCC-c
Confidence 46888883 3346655 67779999999999999999999997663211111 111123433 8999998 78 7
Q ss_pred cceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC
Q 003472 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (817)
Q Consensus 697 PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~ 776 (817)
=+|.+++.+++++.+... ..++..+.++.+++.++|+.. ...+++.+.....++ .+.+.++++..
T Consensus 200 RiG~~v~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~L~~~---~~~~~~~~~~~~~r~----~l~~~L~~~~~ 264 (330)
T PRK05664 200 RLGFVLAEPALLRALAEL--------LGPWTVSGPTRWLAQAALADT---PWQRRQRERLLAASQ----RLAALLRRHGL 264 (330)
T ss_pred ceEEEEeCHHHHHHHHHh--------cCCCCCCHHHHHHHHHHHhCh---HHHHHHHHHHHHHHH----HHHHHHHHCCC
Confidence 899999999999887532 124556677777777776432 222233333333233 34444555532
Q ss_pred cceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 777 VQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 777 V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
....|.+.++-+.+. ....+...+.++||+
T Consensus 265 -~~~~~~~~f~~~~~~---------~~~~~~~~l~~~gi~ 294 (330)
T PRK05664 265 -TPAGGCALFQWVRTE---------DAAALHEFLARRGIL 294 (330)
T ss_pred -cccCCcceEEEEecC---------CHHHHHHHHHHCCeE
Confidence 112233355554432 135677788888874
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-05 Score=90.60 Aligned_cols=154 Identities=13% Similarity=0.072 Sum_probs=85.0
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC--C
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG--G 694 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg--G 694 (817)
+..+|++|-. ..-.|.+.+ +++|.++|+++|+++|+||++..+ -.... .....|++ .+.|.++| |
T Consensus 138 ~tklV~l~~p-~NptG~~~d----l~~I~~la~~~g~~vvvD~a~~~~-~~~~~-----~~~g~Divv~S~tK~~~G~~~ 206 (390)
T PRK08064 138 NTKLFYVETP-SNPLLKVTD----IRGVVKLAKAIGCLTFVDNTFLTP-LLQKP-----LDLGADVVLHSATKFLAGHSD 206 (390)
T ss_pred CceEEEEECC-CCCCcEecc----HHHHHHHHHHcCCEEEEECCCCcc-cccCc-----hhhCCcEEEeecceeccCCcc
Confidence 4578888875 555677765 899999999999999999998422 11111 12235887 55798875 2
Q ss_pred CCcceEEEe-chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHH---
Q 003472 695 VIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ--- 770 (817)
Q Consensus 695 y~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~--- 770 (817)
. =.|++++ ++++.+.+.. .........+|..+..++..++.+. ...++..+++..+.++|.+. -+.
T Consensus 207 ~-laG~~v~~~~~~~~~l~~------~~~~~g~~~~~~~a~l~~~gl~tl~--~R~~~~~~~a~~la~~L~~~-~~v~~v 276 (390)
T PRK08064 207 V-LAGLAVVKDEELAQKLYF------LQNSFGAVLGVQDCWLVLRGLKTLH--VRLEHSSETANKIALYLQEH-PKVQNV 276 (390)
T ss_pred c-eeEEEEeCCHHHHHHHHH------HHHhcCCCCCHHHHHHHHcccCcHH--HHHHHHHHHHHHHHHHHhcC-CCcceE
Confidence 1 1233444 4567666632 1122233455666665444433221 12244455555555444331 011
Q ss_pred ----HHcCCCc----ceEEeeeeEEEEEEec
Q 003472 771 ----ISSHRTV----QRVVALGTLCAIELQA 793 (817)
Q Consensus 771 ----l~~~p~V----~~VrG~Glm~gIel~~ 793 (817)
+..+|.. ....|.|.|+.|++..
T Consensus 277 ~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~ 307 (390)
T PRK08064 277 YYPGLQTHLGFDIQQSQATSAGAVLSFTLQS 307 (390)
T ss_pred ECCCCCCCccHHHHHHhCCCcceEEEEEECC
Confidence 1112211 1335889999999953
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00026 Score=80.17 Aligned_cols=171 Identities=12% Similarity=0.070 Sum_probs=95.3
Q ss_pred EEEE-EEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccc--ccc----hhhhcCC--CCcee---ec
Q 003472 620 IGAL-IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VET----TADLLGC--VPDIA---CY 687 (817)
Q Consensus 620 iAAv-IvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG--~~~----a~e~~gv--~PDiv---tl 687 (817)
+.+| |.-| +.=-|.+. +.+-+++|.++|++|++++|.||+...+-..+ ..- .....+. .+.++ ++
T Consensus 166 ~k~i~l~~p--~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~ 242 (393)
T TIGR03538 166 CQLLFVCSP--GNPTGAVL-SLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSL 242 (393)
T ss_pred ceEEEEeCC--CCCcCccc-CHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecc
Confidence 3444 4555 44456655 78899999999999999999999987552222 110 1111221 12232 78
Q ss_pred ccccC-CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHH
Q 003472 688 GKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLE 766 (817)
Q Consensus 688 gK~Lg-gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~ 766 (817)
||.++ .| +=+|.+++++++++.+... ....+++.+++...++.+++. .++..++..+..+...+ .
T Consensus 243 SK~~~~~G-lRvG~~i~~~~l~~~~~~~------~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~----~ 308 (393)
T TIGR03538 243 SKRSNLPG-LRSGFVAGDAEILKAFLRY------RTYHGCAMPIPTQLASIAAWN---DEQHVRENRALYREKFA----A 308 (393)
T ss_pred hhhcCCcc-cceEEEecCHHHHHHHHHH------HHhhccCcCHHHHHHHHHHhc---ChHHHHHHHHHHHHHHH----H
Confidence 99865 47 7888899999988877421 111345567777777766652 22222222222222222 2
Q ss_pred HHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCCC
Q 003472 767 LIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 767 l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv~ 816 (817)
+.+.++++-.+ ....-|.++-+++..+ ...+...++ ++||.
T Consensus 309 ~~~~L~~~~~~-~~p~gg~f~~~~~~~~--------~~~~~~~l~~~~gV~ 350 (393)
T TIGR03538 309 VLEILGQVLDL-ELPDAGFYLWPKVPGD--------DEAFARALYEEENVT 350 (393)
T ss_pred HHHHHHhhCcc-cCCCeeEEEEEECCCC--------HHHHHHHHHHHCCEE
Confidence 33333332111 1233477888887511 244666665 46763
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00027 Score=80.87 Aligned_cols=179 Identities=12% Similarity=0.111 Sum_probs=97.7
Q ss_pred cEEEEEEc-cccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-chhhhcCC-CCcee--ecccccC-
Q 003472 619 CIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGC-VPDIA--CYGKLLT- 692 (817)
Q Consensus 619 ~iAAvIvE-PV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a~e~~gv-~PDiv--tlgK~Lg- 692 (817)
++.+|++- | +.=-|.+. +.+-+++|.++|++||+++|.||+...+--.+.. ...+..+. ..+|+ +|||.+|
T Consensus 179 ~~k~i~l~nP--~NPTG~v~-s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~ 255 (410)
T PRK06290 179 KAKLLYLNYP--NNPTGAVA-TKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNM 255 (410)
T ss_pred cceEEEEECC--CCCCCcCC-CHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCC
Confidence 34455555 7 44456665 7889999999999999999999998655111211 11111111 12233 8999996
Q ss_pred CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
.| +=+|.+++++++++.+.... ...+.+.+.++.+++.++| ++++..+++.+..+...+ .+.+.++
T Consensus 256 ~G-lRiG~ii~~~~l~~~l~~~~------~~~~~~~~~~~q~aa~~~l---~~~~~~~~~~~~~~~~~~----~l~~~L~ 321 (410)
T PRK06290 256 TG-WRLAFVVGNELIVKAFATVK------DNNDSGQFIAIQKAGIYAL---DHPEITEKIREKYSRRLD----KLVKILN 321 (410)
T ss_pred ch-hheEeEEeCHHHHHHHHHHH------hccccCCcHHHHHHHHHHh---hCcHHHHHHHHHHHHHHH----HHHHHHH
Confidence 57 67888999999998875311 1112223345555555554 332222333332222222 2334445
Q ss_pred cCCCcceEEee-eeEEEEEEecCCC-CCCcchHHHHHHHHHHcCC
Q 003472 773 SHRTVQRVVAL-GTLCAIELQAAGC-NAGYCLIELFLYNFLTTGM 815 (817)
Q Consensus 773 ~~p~V~~VrG~-Glm~gIel~~~~~-~~~~~~~~~~~~~~l~~Gv 815 (817)
++++ .-.... |+++-+.+.+... ...+.....+...++++|+
T Consensus 322 ~~g~-~~~~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~ 365 (410)
T PRK06290 322 EVGF-KAEMPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKL 365 (410)
T ss_pred hCCC-eecCCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCC
Confidence 5542 111222 4555567754310 0111245668888888864
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00017 Score=82.04 Aligned_cols=288 Identities=14% Similarity=0.103 Sum_probs=164.8
Q ss_pred CHHHHHHHHHHHHhcc-ccCCCCCCChHHHHHHHHHHhhcCCCC--cceEEEeCChHHHHHHHHHHHHHHhhcccccccc
Q 003472 418 QIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKGW--ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~~--~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~ 494 (817)
++.+.+|+.+++.... ++....+.-+....+++.+.+..+-.. -+.++.++.++||+-.++.... .
T Consensus 43 p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~-----~------ 111 (393)
T COG0436 43 PEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALL-----N------ 111 (393)
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhc-----C------
Confidence 7789999999998764 333445566777788888887654111 1349999999999999988772 1
Q ss_pred ccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecC--C-chhhhc
Q 003472 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL--P-EWLYSK 571 (817)
Q Consensus 495 ~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~--P-~~~~~~ 571 (817)
++ ..||..+-+|=.-. ..+.+.|... ..++. + ..|.
T Consensus 112 ---------pG-DeVlip~P~Y~~y~-~~~~~~gg~~----------------------------v~v~l~~~~~~f~-- 150 (393)
T COG0436 112 ---------PG-DEVLIPDPGYPSYE-AAVKLAGGKP----------------------------VPVPLDEEENGFK-- 150 (393)
T ss_pred ---------CC-CEEEEeCCCCcCHH-HHHHhcCCEE----------------------------EEEeCCcCccCCc--
Confidence 11 24777766664321 1222222110 01110 0 0110
Q ss_pred ccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcE-EEEEEccccccCCCcccCCHHHHHHHHHHH
Q 003472 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCI-GALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (817)
Q Consensus 572 ~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~i-AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc 650 (817)
.| .+.|++.+. + ++ +.+|.-|= .- -|.+. +++.+++|.++|
T Consensus 151 ---------~d------------------~~~l~~~i~-------~-ktk~i~ln~P~-NP-TGav~-~~~~l~~i~~~a 192 (393)
T COG0436 151 ---------PD------------------LEDLEAAIT-------P-KTKAIILNSPN-NP-TGAVY-SKEELKAIVELA 192 (393)
T ss_pred ---------CC------------------HHHHHhhcC-------c-cceEEEEeCCC-CC-cCcCC-CHHHHHHHHHHH
Confidence 01 255666654 2 34 44555773 33 35544 899999999999
Q ss_pred hhcCCcEEEeeeeeccccccccchhhhcCCCC--c----eeecccccC-CCCCcceEEEec-hHHHhhhcCCCccceeec
Q 003472 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVP--D----IACYGKLLT-GGVIPLAATLAT-NAVFDSFVGDSKLKALLH 722 (817)
Q Consensus 651 ~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~P--D----ivtlgK~Lg-gGy~PlsAvl~s-~~i~d~~~~~~~~~~~~h 722 (817)
++||+.+|.|||..++--.|..+. .-..+.+ | +-.|||..+ -| +=+|.+++. +++.+.+.. .+
T Consensus 193 ~~~~i~ii~DEiY~~l~yd~~~~~-s~~~~~~~~~~~i~i~s~SK~~~mtG-wRvG~~v~~~~~l~~~~~~-------~~ 263 (393)
T COG0436 193 REHDIIIISDEIYEELVYDGAEHP-SILELAGARDRTITINSFSKTYGMTG-WRIGWVVGPPEELIAALRK-------LK 263 (393)
T ss_pred HHcCeEEEEehhhhhcccCCCCcC-CHhhcCCCcceEEEEecccccccccc-cceeEeecChHHHHHHHHH-------HH
Confidence 999999999999999866664111 1122233 3 227899887 46 677889988 888877741 23
Q ss_pred cc-CCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEE-eeeeEEEEEEecCCCCCCc
Q 003472 723 GH-SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGY 800 (817)
Q Consensus 723 ~~-T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~Vr-G~Glm~gIel~~~~~~~~~ 800 (817)
.+ +++.+.++-.+|.++|+--++.+..+...+.-++-++ .+.+.+.+.+.+.-+. -.|.|..+-=.+..
T Consensus 264 ~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd----~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~----- 334 (393)
T COG0436 264 SYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRD----LLVEALNEIGGLSVVKPPEGAFYLFPKIPEL----- 334 (393)
T ss_pred HhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH----HHHHHHHhcCCeeeccCCCeeEEEEeecCCC-----
Confidence 34 4467777777887777643221122222211222222 3444555565444444 33555544322221
Q ss_pred chHHHHHHHHHHc
Q 003472 801 CLIELFLYNFLTT 813 (817)
Q Consensus 801 ~~~~~~~~~~l~~ 813 (817)
.....|..+++++
T Consensus 335 ~d~~~f~~~Ll~~ 347 (393)
T COG0436 335 LDSEEFAKKLLEE 347 (393)
T ss_pred CCHHHHHHHHHHh
Confidence 3445566666654
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00019 Score=81.69 Aligned_cols=178 Identities=10% Similarity=0.037 Sum_probs=95.0
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-chhhhcCCCCcee---ecccccC-CCC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA---CYGKLLT-GGV 695 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a~e~~gv~PDiv---tlgK~Lg-gGy 695 (817)
+.+++-| +.--|.+ .+.+-+++|.++|+++|+++|.||++..|-..+.. .....+.-.+.++ +|+|.++ .|
T Consensus 172 ~v~i~~p--~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG- 247 (403)
T TIGR01265 172 AIVVINP--SNPCGSV-FSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPG- 247 (403)
T ss_pred EEEEecC--CCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCc-
Confidence 4555556 3445654 47777899999999999999999999877444422 1222221122343 7899954 47
Q ss_pred CcceEEEech--H-----HHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHH
Q 003472 696 IPLAATLATN--A-----VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELI 768 (817)
Q Consensus 696 ~PlsAvl~s~--~-----i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~ 768 (817)
+=+|.+++.. + +.+.+.. ....+++.++++-+++.+.|+-- .+...++..+..+.-.+ .+.
T Consensus 248 lRiG~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~----~l~ 315 (403)
T TIGR01265 248 WRLGWIIIHDPHGIFRDTVLQGLKN-------LLQRILGPATIVQGALPDILENT-PQEFFDGKISVLKSNAE----LCY 315 (403)
T ss_pred ceEEEEEEeCchhhhHHHHHHHHHH-------HhhhhcCCChHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHH----HHH
Confidence 6788888742 2 2332211 11124455677777666666431 11222232222222222 344
Q ss_pred HHHHcCCCcceEE-eeeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCC
Q 003472 769 QQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGM 815 (817)
Q Consensus 769 ~~l~~~p~V~~Vr-G~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv 815 (817)
+.++.++.+.-++ .-|.++-+++.+.. ..+......+...++ ++||
T Consensus 316 ~~L~~~~~~~~~~p~~g~f~~~~~~~~~-~~~~~~~~~~~~~l~~~~gv 363 (403)
T TIGR01265 316 EELKDIPGLVCPKPEGAMYLMVKLELEL-FPEIKDDVDFCEKLVREESV 363 (403)
T ss_pred HHHhcCCCceecCCCceeEEEEeccccc-cCCCCCHHHHHHHHHHhCCE
Confidence 5555555443222 34778888876431 011112344555544 5676
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00021 Score=83.10 Aligned_cols=185 Identities=11% Similarity=-0.016 Sum_probs=97.2
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc-hhhhcCCCCcee---ecccccC-
Q 003472 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLLT- 692 (817)
Q Consensus 618 ~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~-a~e~~gv~PDiv---tlgK~Lg- 692 (817)
...+.+|+-|- .-.|.+. +.+-+++|.++|++||+++|.||+...|--.|..+ ....+.-.+.++ +|||.++
T Consensus 204 ~~~~v~i~nP~--NPTG~v~-s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~ 280 (462)
T PLN02187 204 NTVAMVVINPN--NPCGNVY-SHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVV 280 (462)
T ss_pred CcEEEEEeCCC--CCCCCcc-CHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCC
Confidence 35678888883 3446555 78899999999999999999999997752223221 111221111233 7899955
Q ss_pred CCCCcceEEEec-h-HHH---hhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLAT-N-AVF---DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (817)
Q Consensus 693 gGy~PlsAvl~s-~-~i~---d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l 767 (817)
.| +-+|.+++. + .++ +.+..- .. ....+.+.+.++-+++.++|+.- .++..+++.+..+.-.+ .+
T Consensus 281 pG-lRiG~~v~~~p~~~~~~~~~~~~~---~~-~~~~~~~~s~~~Q~a~~~~L~~~-~~~~l~~~~~~l~~~r~----~l 350 (462)
T PLN02187 281 PG-WKIGWIALNDPEGVFETTKVLQSI---KQ-NLDVTPDPATIIQAALPAILEKA-DKNFFAKKNKILKHNVD----LV 350 (462)
T ss_pred cc-ceeEEEEecCchhHHHHHHHHHHH---HH-hccccCCCCHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHH----HH
Confidence 57 788988873 2 222 233210 00 11122234677777777776421 11222333222222222 34
Q ss_pred HHHHHcCCCcceE-E-eeeeEEEEEEecCCCCCCc-chHHHHHHHHHHcCCC
Q 003472 768 IQQISSHRTVQRV-V-ALGTLCAIELQAAGCNAGY-CLIELFLYNFLTTGMH 816 (817)
Q Consensus 768 ~~~l~~~p~V~~V-r-G~Glm~gIel~~~~~~~~~-~~~~~~~~~~l~~Gv~ 816 (817)
.+.+++.|.+..+ . .-|.++-+++.... ..+. +..+.+.+.+.++||+
T Consensus 351 ~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~-~~~~~~~~~~~~~ll~~~gV~ 401 (462)
T PLN02187 351 CDRLKDIPCVVCPKKPESCTYLLTKLELSL-MDNIKDDIDFCVKLAREENLV 401 (462)
T ss_pred HHHHhhCCCCcCCCCCCEeEEEEeecChhh-CCCCCCHHHHHHHHHhhCCEE
Confidence 4555556643221 2 23567777664321 1111 2334444555777863
|
|
| >COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.3e-05 Score=84.48 Aligned_cols=124 Identities=20% Similarity=0.276 Sum_probs=90.6
Q ss_pred eeeccccC-hHHHHhHhcCCCCChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCC
Q 003472 172 FAWEEAVS-PHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFR 250 (817)
Q Consensus 172 ~~~~~~~~-p~~a~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~ 250 (817)
+..+.+.. |...+++.-| .-..-.|+..+++...+. .|++||.++=|+..|.......+|+
T Consensus 127 ~~~k~~~g~~li~g~l~vG-e~~s~~lV~~~kk~a~E~------------~~~~IIDsaaG~gCpVi~sl~~aD~----- 188 (284)
T COG1149 127 YESKTDYGFPLISGRLNVG-EEESGKLVTALKKHAKEL------------ADLLIIDSAAGTGCPVIASLKGADL----- 188 (284)
T ss_pred EEEEcCCCceeEEeeccCC-ccccchHHHHHHHhhhhh------------cceeEEecCCCCCChHHHhhccCCE-----
Confidence 34444444 4455554412 223456667777766541 6999999999999997655555554
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCCCHHHHHHhhcC-CCcEEe-cCCCCCCC
Q 003472 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRN-RVPVLV-LPPLPQDS 317 (817)
Q Consensus 251 ~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~~~~~l~~~~~~-~~pvlg-iP~~~~~~ 317 (817)
+|+|+-.---+++.....+|..+.-|++ .++|+||....+. .++++.++ ++|+++ ||+..+..
T Consensus 189 --ai~VTEPTp~glhD~kr~~el~~~f~ip-~~iViNr~~~g~s-~ie~~~~e~gi~il~~IPyd~~i~ 253 (284)
T COG1149 189 --AILVTEPTPFGLHDLKRALELVEHFGIP-TGIVINRYNLGDS-EIEEYCEEEGIPILGEIPYDKDIP 253 (284)
T ss_pred --EEEEecCCccchhHHHHHHHHHHHhCCc-eEEEEecCCCCch-HHHHHHHHcCCCeeEECCcchhHH
Confidence 5788888888999999999999988877 7999999954444 77887766 899999 99987754
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.5e-05 Score=88.37 Aligned_cols=147 Identities=13% Similarity=0.154 Sum_probs=87.9
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCC-C
Q 003472 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTG-G 694 (817)
Q Consensus 618 ~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~Lgg-G 694 (817)
.++.+|++|-+ ....+.+.+ +++|.++|+++| +++|-++ |.+-. ....+.-.|++++| |-++| |
T Consensus 147 ~~tklv~~e~~-snpt~~v~D----i~~I~~la~~~~--lvVD~t~-~s~~~-----~~pl~~gaDivv~S~tK~i~G~~ 213 (384)
T PRK06434 147 SNYDLIYAESI-TNPTLKVPD----IKNVSSFCHEND--VIVDATF-ASPYN-----QNPLDLGADVVIHSATKYISGHS 213 (384)
T ss_pred CCeeEEEEEcC-CCCCceeec----HHHHHHHHHHcC--eEEECCC-CCccc-----CCchhcCCCEEEeecccccCCCC
Confidence 45778889986 444455554 999999999998 4679997 22222 23334567998765 77866 2
Q ss_pred CCcceEEEe-chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 695 VIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 695 y~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
=+-.|++++ ++++++.+... ....-...+|..|+.++..|+.+.. ..++-.+++.. +.+.++.
T Consensus 214 d~~gG~vv~~~~~~~~~~~~~------~~~~G~~~~~~~A~l~~~gL~tL~~--R~~r~~~~a~~--------~a~~L~~ 277 (384)
T PRK06434 214 DVVMGVAGTNNKSIFNNLVER------RKTLGSNPDPIQAYLALRGLKTLGL--RMEKHNKNGME--------LARFLRD 277 (384)
T ss_pred CceEEEEecCcHHHHHHHHHH------HHhcCCCCCHHHHHHHHhCCCcHHH--HHHHHHHHHHH--------HHHHHHc
Confidence 122344545 45555544210 0112233578888887777766633 12222333333 3445667
Q ss_pred CCCcceEE------------eeeeEEEEEEec
Q 003472 774 HRTVQRVV------------ALGTLCAIELQA 793 (817)
Q Consensus 774 ~p~V~~Vr------------G~Glm~gIel~~ 793 (817)
||.|..|. |.|.|+.|+|..
T Consensus 278 ~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~ 309 (384)
T PRK06434 278 SKKISNVYYPDTEIGKKVLRGFGGMLSFELRS 309 (384)
T ss_pred CCCccEEECCChHHHHHhcCCCCceEEEEECC
Confidence 88776654 678899999963
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.1e-05 Score=83.09 Aligned_cols=289 Identities=14% Similarity=0.099 Sum_probs=150.8
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alk 479 (817)
.++|+..+ ...++. .|++.+++.+.+.......+ ...-..+|-+.|+++.+....+.++++++++++...+++
T Consensus 27 ~~i~l~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~Y---~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~ 99 (356)
T PRK04870 27 GMVKLDAM--ENPYRL--PAELRAELGERLAEVALNRY---PDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLAL 99 (356)
T ss_pred CceeCcCC--CCCCCC--CHHHHHHHHHHhhccccccC---CCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHH
Confidence 56776553 234444 58999999988764222111 112235677777777653211367778877788887776
Q ss_pred HHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcc
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (817)
+.. .. ...|+..+-+|.+.. ......|..
T Consensus 100 ~~~-----~~----------------gd~vlv~~P~y~~~~-~~~~~~g~~----------------------------- 128 (356)
T PRK04870 100 ACA-----KP----------------GATVLAPEPGFVMYR-MSAKLAGLE----------------------------- 128 (356)
T ss_pred Hhc-----CC----------------CCEEEECCCCHHHHH-HHHHHcCCE-----------------------------
Confidence 551 11 135777666666422 111111111
Q ss_pred eeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE-EEccccccCCCcccC
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL-IIEPVVHAAGGMHMV 638 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAv-IvEPV~qg~gG~~~p 638 (817)
.++.|..- + +. + + .+.+++.+.. .++.+| |.-| +.-.|.+.
T Consensus 129 -~~~i~~~~--------~--~~-~--------d--------~~~l~~~~~~-------~~~~~v~l~~p--~NPtG~~~- 170 (356)
T PRK04870 129 -FVGVPLTA--------D--FT-L--------D--------LPAMLAAIAE-------HRPALVFLAYP--NNPTGNLF- 170 (356)
T ss_pred -EEEecCCC--------C--CC-C--------C--------HHHHHHHhhc-------CCCCEEEEcCC--CCCCCCCC-
Confidence 11111000 0 00 0 0 1456666642 133344 4446 45557766
Q ss_pred CHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccCC-CCCcceEEEechHHHhhhcCC
Q 003472 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLTG-GVIPLAATLATNAVFDSFVGD 714 (817)
Q Consensus 639 p~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lgg-Gy~PlsAvl~s~~i~d~~~~~ 714 (817)
+.+-++++.++| ++++|+||+...|.- .. +.. ...-.+.++ +++| .+. | +.+|.+++++++++.+...
T Consensus 171 ~~~~~~~i~~~~---~~~ii~De~y~~~~~-~~-~~~-~~~~~~~vi~~~S~SK-~~~~G-lRiG~~i~~~~~i~~~~~~ 242 (356)
T PRK04870 171 DDADVERIIEAA---PGLVVVDEAYQPFAG-DS-WLP-RLARFPNLLVMRTVSK-LGLAG-LRLGYLAGHPAWIAELDKV 242 (356)
T ss_pred CHHHHHHHHHHC---CCEEEEECCchhhcC-cc-hHH-HHhhCCCEEEEecchh-hhhHH-HhhhhhhCCHHHHHHHHHc
Confidence 556666666666 789999999977732 11 111 111112332 7899 543 6 6788899999998877532
Q ss_pred CccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecC
Q 003472 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (817)
Q Consensus 715 ~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~ 794 (817)
...+..+.++.+++.++++. .+..++..+..+...+ .+.+.+++.+.+.-....|.++.+.+. +
T Consensus 243 --------~~~~~~~~~~q~~a~~~l~~---~~~~~~~~~~~~~~~~----~l~~~L~~~~~~~~~~~~~~~~~~~~~-~ 306 (356)
T PRK04870 243 --------RPPYNVNVLTQATALFALEH---VDVLDAQAAQLRAERT----RLAAALAALPGVTVFPSAANFILVRVP-D 306 (356)
T ss_pred --------cCCCcCCHHHHHHHHHHHhC---HHHHHHHHHHHHHHHH----HHHHHHHhCCCcEECCCCCeEEEEECC-C
Confidence 12344566666666666542 1222233333333333 233444445443222345666666654 1
Q ss_pred CCCCCcchHHHHHHHHHHcCCC
Q 003472 795 GCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 795 ~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
...+...+.++||.
T Consensus 307 --------~~~~~~~l~~~gI~ 320 (356)
T PRK04870 307 --------AAAVFDGLKTRGVL 320 (356)
T ss_pred --------HHHHHHHHHHCCEE
Confidence 24566777888874
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.3e-05 Score=85.52 Aligned_cols=249 Identities=16% Similarity=0.161 Sum_probs=148.0
Q ss_pred CHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 003472 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~ 497 (817)
+|+|.+|+.++.-. |.. .-......++-+.|...++....+-+++..||+-|+|+|+.-.. .+
T Consensus 17 ~~~V~~am~~~~~~--h~s--~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~-----~p-------- 79 (383)
T COG0075 17 PPRVLLAMARPMVG--HRS--PDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLV-----EP-------- 79 (383)
T ss_pred CHHHHHHhcCCCCC--CCC--HHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhcc-----CC--------
Confidence 67777776654321 211 11234556677777777764212346778999999999998772 11
Q ss_pred CCccccccceEEEEEcCCccCCcccccccc-CCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccc
Q 003472 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQ-APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (817)
Q Consensus 498 ~~~~~~~~r~~II~~~gsyHG~t~galslt-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~ 576 (817)
-.+++...++.-|.-..=+.-. |.. +..+..+ +-.
T Consensus 80 --------gdkVLv~~nG~FG~R~~~ia~~~g~~----------------------------v~~~~~~-wg~------- 115 (383)
T COG0075 80 --------GDKVLVVVNGKFGERFAEIAERYGAE----------------------------VVVLEVE-WGE------- 115 (383)
T ss_pred --------CCeEEEEeCChHHHHHHHHHHHhCCc----------------------------eEEEeCC-CCC-------
Confidence 2377777777766432211111 100 0011111 000
Q ss_pred cccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCc
Q 003472 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (817)
Q Consensus 577 d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~Gil 656 (817)
--+ .+.+++.|++. ..-+-++.+-.|. +.|+.-| +++|.++|++||++
T Consensus 116 ---~v~------------------p~~v~~~L~~~---~~~~~V~~vH~ET----STGvlnp----l~~I~~~~k~~g~l 163 (383)
T COG0075 116 ---AVD------------------PEEVEEALDKD---PDIKAVAVVHNET----STGVLNP----LKEIAKAAKEHGAL 163 (383)
T ss_pred ---CCC------------------HHHHHHHHhcC---CCccEEEEEeccC----cccccCc----HHHHHHHHHHcCCE
Confidence 000 25677777741 1223456666666 3577777 99999999999999
Q ss_pred EEEeeeeeccccccccchhhhcCCCCceee--cccccCC--CCCcceEEEechHHHhhhcCCCcc---------ceee--
Q 003472 657 VIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG--GVIPLAATLATNAVFDSFVGDSKL---------KALL-- 721 (817)
Q Consensus 657 LI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgK~Lgg--Gy~PlsAvl~s~~i~d~~~~~~~~---------~~~~-- 721 (817)
+|+|=|-+ +| |..+-.+.||| |+++ -=|+|++ | +|.+..+++..+.+...... ..+.
T Consensus 164 ~iVDaVsS-~G--g~~~~vd~wgi--Dv~itgSQK~l~~PPG---la~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~ 235 (383)
T COG0075 164 LIVDAVSS-LG--GEPLKVDEWGI--DVAITGSQKALGAPPG---LAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEK 235 (383)
T ss_pred EEEEeccc-CC--CcccchhhcCc--cEEEecCchhccCCCc---cceeEECHHHHHHHhcCCCCceeecHHHHHHHHhh
Confidence 99999885 52 44555666665 5554 4589987 6 57788999999988754321 0011
Q ss_pred -cccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHH
Q 003472 722 -HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELI 768 (817)
Q Consensus 722 -h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~ 768 (817)
..+-|+-..-...+-.++|+.+.+++ .++.+++-+.+++.+++.+.
T Consensus 236 ~~~~p~Tppv~~i~aL~~al~~i~~EG-le~r~~RH~~~~~a~r~~~~ 282 (383)
T COG0075 236 KGSTPYTPPVNLIYALREALDLILEEG-LEARIARHRRLAEALRAGLE 282 (383)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHH
Confidence 12233344444555668999998887 45666666677776666543
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.1e-05 Score=83.65 Aligned_cols=199 Identities=16% Similarity=0.130 Sum_probs=114.4
Q ss_pred CHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 003472 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~ 497 (817)
+|++.+|+.++-.. ... .-+..+...+++++++++++. ..++|+.||+.||..||.... ++
T Consensus 13 ~~~m~eam~~a~~~-~~~--~YG~D~~~~~~e~~~ae~~g~---~a~~Fv~sGT~aN~lal~~~~-----~~-------- 73 (342)
T COG2008 13 TPEMREALAAANAV-GDD--VYGEDPTTNALEQRIAELFGK---EAALFVPSGTQANQLALAAHC-----QP-------- 73 (342)
T ss_pred CHHHHHHHHhcccc-CCC--CCCCCHHHHHHHHHHHHHhCC---ceEEEecCccHHHHHHHHHhc-----CC--------
Confidence 89999999976532 111 113467788999999999984 789999999999999998771 11
Q ss_pred CCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhccccccc
Q 003472 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (817)
Q Consensus 498 ~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d 577 (817)
...+.....-|=-+..+-. ...+.. ...++....-..
T Consensus 74 ---------~~~vi~~~~aHi~~~E~Ga---~~~~~~------------------------~~~~~~~~g~~G------- 110 (342)
T COG2008 74 ---------GESVICHETAHIYTDECGA---PEFFGG------------------------GQKLPIVPGADG------- 110 (342)
T ss_pred ---------CCeEEEeccccceecccCc---HHHHcC------------------------CceeccCCCCCC-------
Confidence 2334444444433322111 111100 011111100000
Q ss_pred ccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcE
Q 003472 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (817)
Q Consensus 578 ~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilL 657 (817)
.-+ .+.++..+..-. .+......+++|.- ..++|.+. |.++++++.++|+++|+.|
T Consensus 111 --klt------------------~e~v~~~i~~~d--~~~~~~~~~~~e~~-~te~GtVy-~l~el~~i~~~~k~~~l~L 166 (342)
T COG2008 111 --KLT------------------PEDVEAAIRPDD--IHHAPTPLAVLENT-ATEGGTVY-PLDELEAISAVCKEHGLPL 166 (342)
T ss_pred --CcC------------------HHHHHHhhcCCC--cccCCCceEEEeec-cCCCceec-CHHHHHHHHHHHHHhCCce
Confidence 001 244555554310 12334556677774 67888876 8999999999999999999
Q ss_pred EEeeeeeccccccccchhhhcCC-------CCcee--ecccccCCCCCcceEEE-echHHHhhhc
Q 003472 658 IFDEVFTGFWRLGVETTADLLGC-------VPDIA--CYGKLLTGGVIPLAATL-ATNAVFDSFV 712 (817)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv-------~PDiv--tlgK~LggGy~PlsAvl-~s~~i~d~~~ 712 (817)
=+|=. |..- +.-.+|+ --|.+ +++|++ | .|.++++ ++.+....+.
T Consensus 167 HmDGA-----R~~n--A~valg~~~~~~~~~~D~v~~~~tK~g--~-~~~gAiv~gn~~~~~~a~ 221 (342)
T COG2008 167 HMDGA-----RLAN--ALVALGVALKTIKSYVDSVSFCLTKGG--G-APVGAIVFGNRDFAKRAR 221 (342)
T ss_pred eechH-----HHHH--HHHHcCCCHHHHHhhCCEEEEecccCC--c-ceeeeEEEcCHHHHHHHH
Confidence 99944 2211 1111221 23666 455554 4 5666665 6666666553
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.1e-05 Score=84.63 Aligned_cols=169 Identities=14% Similarity=0.125 Sum_probs=100.9
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCC
Q 003472 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGV 695 (817)
Q Consensus 620 iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy 695 (817)
+.+|++-.. +.-.|.+. +.+-++++.+.|+ +++++|+||+...|.. .. ......+..+.++ +|||.+| .|
T Consensus 153 ~~lv~l~~p-~NPTG~~~-~~~~~~~l~~~~~-~~~~iI~Deay~~f~~-~~-~~~~~~~~~~~vi~~~SfSK~~gl~G- 226 (364)
T PRK04781 153 AKLVFLCSP-SNPAGSAI-ALDQIERALQALQ-GKALVVVDEAYGEFSD-VP-SAVGLLARYDNLAVLRTLSKAHALAA- 226 (364)
T ss_pred CeEEEEcCC-CCCCCCCc-CHHHHHHHHHhCC-CCcEEEEeCcchhhcC-Cc-chHHHHhhCCCEEEEecChhhccccc-
Confidence 344444332 56667777 5666677777775 4899999999977732 11 1112223334554 8999999 78
Q ss_pred CcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 696 ~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
+=+|.+++++++++.+... ..+|+.+.++..++.++| ++.+ .+.+.+..+.+.+ .++.+.+.+++.+
T Consensus 227 lRvGy~v~~~~l~~~l~~~--------~~~~~~~~~~~~~a~~~l---~~~~-~~~~~~~~~~~~~-~r~~l~~~L~~~~ 293 (364)
T PRK04781 227 ARIGSLIANAELIAVLRRC--------QAPYPVPTPCAALAEQAL---SAPA-LAVTARRVAEVRA-ERERLHAALAQLP 293 (364)
T ss_pred ceeeeeeCCHHHHHHHHhc--------cCCCCCCHHHHHHHHHHH---hccc-HHHHHHHHHHHHH-HHHHHHHHHHhCC
Confidence 7889999999999988542 234566777776666655 3321 1222222222221 2234455556665
Q ss_pred Ccc-eEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 776 TVQ-RVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 776 ~V~-~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+. -....|.++-+++.+ ...+...+.++||+
T Consensus 294 ~~~~~~p~~g~f~~~~~~~---------~~~~~~~l~~~gI~ 326 (364)
T PRK04781 294 GVRRVYPSQGNFLLVRFDD---------AEAAFQALLAAGVV 326 (364)
T ss_pred CCCeECCCCCcEEEEEcCC---------HHHHHHHHHHCCeE
Confidence 443 234568888887742 24577778888874
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.6e-05 Score=88.85 Aligned_cols=167 Identities=16% Similarity=0.079 Sum_probs=91.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchh----hh
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA----DL 677 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~----e~ 677 (817)
+.+++.|.+ .+..+++.|.+|=.....|| .+.+...+++++++|++||+.||.|=.+. ||- + +|.- .+
T Consensus 157 ~~Le~aI~~----~~~~~~~lV~~e~t~N~~GG-~pvs~~~l~~I~elA~~~Gl~vi~DaAR~-~gN-A-~~I~~re~g~ 228 (450)
T TIGR02618 157 KKLQKLIDE----VGADKIPYICLAVTVNLAGG-QPVSMANMREVRELCEAHGIKVFYDATRC-VEN-A-YFIKEREQGY 228 (450)
T ss_pred HHHHHHhcc----ccCcccCceEEEEecccCCC-eeCCHHHHHHHHHHHHHcCCEEEEEccch-hhC-h-hhhhcccccc
Confidence 567777763 22334555555554234455 45688899999999999999999999884 311 1 1100 01
Q ss_pred cCC-----------CCceeecccccCCCCCcceEEEe--chHHHhhhcCCCccceeecccCCCCCHH-HHHHHHHHHHHh
Q 003472 678 LGC-----------VPDIACYGKLLTGGVIPLAATLA--TNAVFDSFVGDSKLKALLHGHSYSAHAL-GCAAAAKSIKWF 743 (817)
Q Consensus 678 ~gv-----------~PDivtlgK~LggGy~PlsAvl~--s~~i~d~~~~~~~~~~~~h~~T~~gnPl-a~AAAlA~L~~l 743 (817)
.+. --|. |++|+.-.+..|+|.+++ ++++++....... .+..--||++=.. .++|..-+|+..
T Consensus 229 ~~~~i~ei~~e~~~~aD~-~~~S~~Kd~~~~~GG~l~~~d~~l~~k~r~~~~--~~eG~~tyGgla~r~~~ala~gL~e~ 305 (450)
T TIGR02618 229 EDKSIAEILKEMMSYADG-CTMSGKKDCLVNIGGFLCMNDDEMFQSAKELVV--VFEGMPSYGGLAGRDMEAMAIGIREA 305 (450)
T ss_pred cCCCHHHHHHHHhccCcE-EEEeeccCCCCCCceEEEeCCHHHHHHHHHHhh--hcCCccccCchhhhhHHHHHHHHHHh
Confidence 121 2355 677777555578888887 6666665533211 1112236666333 333333345444
Q ss_pred cCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeee
Q 003472 744 KDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGT 785 (817)
Q Consensus 744 ~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Gl 785 (817)
.++...++-..++++|++.|.+ . ..|++..+.|...
T Consensus 306 ~~~~y~~~r~~~a~~La~~L~~----~--Gvpv~~p~ggh~V 341 (450)
T TIGR02618 306 VDYEYIEHRVKQVRYLGDKLKA----A--GVPIVEPVGGHAV 341 (450)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH----C--CCcccCCCCcceE
Confidence 3434444445556676664332 2 4555555555433
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.2e-06 Score=94.50 Aligned_cols=114 Identities=15% Similarity=0.009 Sum_probs=73.5
Q ss_pred HHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC--CCcee--ecccccCCCCCcceEEEechHHHhhhcCCCccc
Q 003472 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC--VPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLK 718 (817)
Q Consensus 643 l~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv--~PDiv--tlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~ 718 (817)
+++++++|++||++|++|++| ++|-.|-....+.++. ..|++ |++|+|.|-. .|.+++++++.+.+... .
T Consensus 237 l~~i~eia~~~gA~L~VD~AH-~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~--GG~I~~~~~l~~~L~~a---~ 310 (493)
T PRK13580 237 FAKLREIADEVGAVLMVDMAH-FAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPR--GGLVLAKKEYADAVDKG---C 310 (493)
T ss_pred HHHHHHHHHHcCCEEEEECch-hhceeccccchhhcCCCCCCcEEEeCChhhccCCC--eEEEEecHHHHHHHhhC---C
Confidence 999999999999999999999 5666663222222221 46876 7899995431 35688899988887422 1
Q ss_pred eeecccCCCCCHHHHHHHHHHHHHhcCcC---chhcHHHHHHHHHHHHHH
Q 003472 719 ALLHGHSYSAHALGCAAAAKSIKWFKDPQ---TNHNIIPERRILRELWDL 765 (817)
Q Consensus 719 ~~~h~~T~~gnPla~AAAlA~L~~l~~~~---l~~~l~~~~~~lg~~l~~ 765 (817)
++. ++..-.|..+|++.+ +..+.+++ ..+++.++++.+.+.|.+
T Consensus 311 P~i--~gg~l~p~iAA~avA-l~e~~~~ef~~y~~~l~~Na~~La~~L~~ 357 (493)
T PRK13580 311 PLV--LGGPLPHVMAAKAVA-LAEARTPEFQKYAQQVVDNARALAEGFLK 357 (493)
T ss_pred Ccc--cCCCccHHHHHHHHH-HHHHhCccHHHHHHHHHHHHHHHHHHHHh
Confidence 222 222334544444554 55554433 578888888888775544
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00034 Score=82.03 Aligned_cols=179 Identities=13% Similarity=0.128 Sum_probs=97.1
Q ss_pred cEEE-EEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch--hhh---cC---CCCce----e
Q 003472 619 CIGA-LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT--ADL---LG---CVPDI----A 685 (817)
Q Consensus 619 ~iAA-vIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a--~e~---~g---v~PDi----v 685 (817)
++.+ +|.-| +.=-|.+. +.+-+++|.++|++||+++|.||++..+-..+..+. .+. ++ +.||. .
T Consensus 199 ~~k~l~l~nP--~NPTG~~~-s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~ 275 (496)
T PLN02376 199 KVKGLILTNP--SNPLGTML-DKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVY 275 (496)
T ss_pred CeeEEEEcCC--CCCCCccC-CHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEE
Confidence 4544 44555 34456655 788999999999999999999999987532343221 111 11 23452 3
Q ss_pred ecccccC-CCCCcceEEEe-chHHHhhhcCCCccceeecccCC-CCCHHHHHHHHHHHHHhcCcCchhc-HHHHHHHHHH
Q 003472 686 CYGKLLT-GGVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSY-SAHALGCAAAAKSIKWFKDPQTNHN-IIPERRILRE 761 (817)
Q Consensus 686 tlgK~Lg-gGy~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T~-~gnPla~AAAlA~L~~l~~~~l~~~-l~~~~~~lg~ 761 (817)
+|||.+| .| +-+|.+++ .+.+.+.+... .++ ..+.++..++ ..+++++++.++ +.++.+.+.+
T Consensus 276 S~SK~~glpG-lRvG~li~~~~~l~~~~~~~---------~~~~~vs~~~Q~a~---~~~L~d~~~~~~~l~~~r~~l~~ 342 (496)
T PLN02376 276 SLSKDMGLPG-FRVGIVYSFNDSVVSCARKM---------SSFGLVSSQTQLML---ASMLSDDQFVDNFLMESSRRLGI 342 (496)
T ss_pred eccccCCCCc-ceEEEEEECCHHHHHHHHHH---------hhcCCCCHHHHHHH---HHHhCChhHHHHHHHHHHHHHHH
Confidence 7899998 78 78999998 45555544211 112 2334444433 334455444333 2232333322
Q ss_pred HHHHHHHHHHHcCCCcceEE-eeeeEEEEEEecCCCC-CCcchHHHHHHHHHHc-CC
Q 003472 762 LWDLELIQQISSHRTVQRVV-ALGTLCAIELQAAGCN-AGYCLIELFLYNFLTT-GM 815 (817)
Q Consensus 762 ~l~~~l~~~l~~~p~V~~Vr-G~Glm~gIel~~~~~~-~~~~~~~~~~~~~l~~-Gv 815 (817)
. .+.+.+.++++.+ .-+. .-|+++-+++...... ..++....+...++++ ||
T Consensus 343 r-~~~l~~~L~~~gi-~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV 397 (496)
T PLN02376 343 R-HKVFTTGIKKADI-ACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKL 397 (496)
T ss_pred H-HHHHHHHHHHCCC-cccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCE
Confidence 2 2234444554432 2232 3468889988543111 2233344566666654 75
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00012 Score=82.45 Aligned_cols=165 Identities=12% Similarity=0.117 Sum_probs=94.7
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc-c-chhhhc-CCCCcee---ecccccC-CC
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-E-TTADLL-GCVPDIA---CYGKLLT-GG 694 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~-~-~a~e~~-gv~PDiv---tlgK~Lg-gG 694 (817)
.+|..| +.-.|.+. +.+.+++|.++|++ ++++|+||+..-|- .+. . ...... ...+.++ +|||.+| .|
T Consensus 163 v~l~~p--~NPtG~~~-~~~~~~~l~~~~~~-~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~G 237 (371)
T PRK05166 163 LMFSNP--SNPVGSWL-TADQLARVLDATPP-ETLIVVDEAYAEYA-AGDDYPSALTLLKARGLPWIVLRTFSKAYGLAG 237 (371)
T ss_pred EEEeCC--CCCCCCCC-CHHHHHHHHHhCCC-CcEEEEECcHHHhc-CCcCcccHHHHHhhcCCCEEEEeechHhhhcch
Confidence 445666 45567766 66777888888865 89999999986552 221 1 111111 1123344 6999999 88
Q ss_pred CCcceEEEe-chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 695 VIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 695 y~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
+-+|.+++ ++++.+.+... ...++.+.++.+++.+.|. +.+..++..+.....++ .+.+.+++
T Consensus 238 -lRiG~~i~~~~~l~~~~~~~--------~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~----~l~~~L~~ 301 (371)
T PRK05166 238 -LRVGYGLVSDPELVGLLDRV--------RTPFNVNGAAQAAALAALD---DEEHLAKGVALALAERE----RLKKELAE 301 (371)
T ss_pred -hheeeeecCCHHHHHHHHHh--------ccCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 79998765 67887777421 1234567777666666663 22222333222222222 34445555
Q ss_pred CCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++. .-+...|.++-+++.. ....+...++++||+
T Consensus 302 ~g~-~~~p~~g~fl~~~~~~--------~~~~l~~~l~~~gi~ 335 (371)
T PRK05166 302 MGY-RIAPSRANFLFFDARR--------PASAVAEALLRQGVI 335 (371)
T ss_pred CcC-eeCCCcCCEEEEeCCC--------CHHHHHHHHHHCCeE
Confidence 543 1123457776655421 235677888888874
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.3e-05 Score=82.83 Aligned_cols=166 Identities=12% Similarity=0.092 Sum_probs=95.0
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~ 696 (817)
+.+|+-| +.=-|.+. +.+-+++|.++|+++|+++|.||+..-|.-.+..-.....+-.+.++ +|||.+| .| +
T Consensus 125 ~v~l~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G-l 200 (332)
T PRK06425 125 LIFIVSP--DNPLGNLI-SRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIPS-L 200 (332)
T ss_pred EEEEeCC--CCCcCCcc-CHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEEEeecHHhcCCch-h
Confidence 4566677 44456655 78889999999999999999999987663222111112222223444 8899999 88 7
Q ss_pred cceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC
Q 003472 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (817)
Q Consensus 697 PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~ 776 (817)
-+|.+++.+++++.+... ..++..+.+++++ +.....+...+++.+.-+..++ .+.+.+++++.
T Consensus 201 RiGy~v~~~~li~~l~~~--------~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~r~----~l~~~L~~~g~ 264 (332)
T PRK06425 201 RIGYIATDDYNMKISRKI--------TEPWSVCDPAIDF----IRSIDLDYVAKHSLDIMENERS----YLINNLEAMGF 264 (332)
T ss_pred hheeeecCHHHHHHHHHc--------CCCCccCHHHHHH----HHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHCCC
Confidence 889999999998887531 1223334433222 2211111111222222222222 34445555432
Q ss_pred cceE-EeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 777 VQRV-VALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 777 V~~V-rG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.-+ ...|.++-+.+. + ...+...++++||.
T Consensus 265 -~~~~~~~g~f~~~~~~-~--------~~~~~~~l~~~gi~ 295 (332)
T PRK06425 265 -RAAGDPSANFITFMIP-D--------AHDFYSYLLKNGIL 295 (332)
T ss_pred -EECCCCCceEEEEEcC-C--------HHHHHHHHHHCCeE
Confidence 212 245677666664 1 25677888888874
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00028 Score=79.57 Aligned_cols=170 Identities=10% Similarity=0.096 Sum_probs=98.8
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-C
Q 003472 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-G 693 (817)
Q Consensus 618 ~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-g 693 (817)
.++.+|++-+- +.=-|.+. +.+-++.+.++| +++++|.||+...|. +.. ......-.+.++ +|||.+| .
T Consensus 167 ~~~k~i~l~~P-~NPTG~~~-s~~~l~~l~~~~--~~~~iI~De~Y~~~~--~~~-~~~~~~~~~~~ivi~SfSK~~g~~ 239 (374)
T PRK02610 167 PPVRVVFVVHP-NSPTGNPL-TAAELEWLRSLP--EDILVVIDEAYFEFS--QTT-LVGELAQHPNWVILRTFSKAFRLA 239 (374)
T ss_pred CCceEEEEeCC-CCCCCCCC-CHHHHHHHHhcc--CCcEEEEeccccccC--ccc-hHHHHhcCCCEEEEEecchhccCc
Confidence 34556654443 56567776 566678888887 499999999997662 211 111111123433 7899996 6
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +-+|.+++++++++.+.... ..++.+.++-.++.++|+.. +...+..+...+. +..+.+.+++
T Consensus 240 G-lRiG~~v~~~~l~~~l~~~~--------~~~~~~~~~q~a~~~~l~~~------~~~~~~~~~~~~~-r~~l~~~L~~ 303 (374)
T PRK02610 240 A-HRVGYAIGHPELIAVLEKVR--------LPYNLPSFSQLAAQLALEHR------QELLAAIPEILQE-RDRLYQALQE 303 (374)
T ss_pred c-cceeeeecCHHHHHHHHHhc--------CCCCCCHHHHHHHHHHhcCH------HHHHHHHHHHHHH-HHHHHHHHHh
Confidence 8 79999999999998875321 23445666666666665421 1222222222222 2334455555
Q ss_pred CCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++.+.-...-|.++-+++... .....+...+.++||+
T Consensus 304 ~~~~~~~p~~g~f~~~~l~~~------~~~~~~~~~l~~~gi~ 340 (374)
T PRK02610 304 LPQLRVWPSAANFLYLRLSQD------AALAALHQALKAQGTL 340 (374)
T ss_pred CCCcEeCCCcceEEEEeCCCC------CCHHHHHHHHHHCCEE
Confidence 554332233466767776532 2345667778888874
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.5e-05 Score=83.29 Aligned_cols=169 Identities=16% Similarity=0.184 Sum_probs=114.6
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..+|....|++|++.+=|+ --.+.+.||-.|.-.|+--..+ .| ..||+-..-|=|+
T Consensus 59 i~NPT~~vlE~RiAaLEGG---~aa~a~aSG~AA~~~ai~~la~-----aG----------------D~iVss~~LYGGT 114 (426)
T COG2873 59 IMNPTTDVLEERIAALEGG---VAALAVASGQAAITYAILNLAG-----AG----------------DNIVSSSKLYGGT 114 (426)
T ss_pred ccCchHHHHHHHHHHhhcc---hhhhhhccchHHHHHHHHHhcc-----CC----------------CeeEeeccccCch
Confidence 4577788999999997663 3567788999888888876621 11 3678877777653
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
..-.+.+- +..|. +++|-|.+ +
T Consensus 115 -~~lf~~tl-------------~~~Gi------------------------------~v~fvd~~----------d---- 136 (426)
T COG2873 115 -YNLFSHTL-------------KRLGI------------------------------EVRFVDPD----------D---- 136 (426)
T ss_pred -HHHHHHHH-------------HhcCc------------------------------EEEEeCCC----------C----
Confidence 33222220 00111 12232221 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.++++++ ++..||.+|.+ ..-++.++. ++.+.++|+++|++||+|-..+. . +.++-+.
T Consensus 137 -~~~~~~aI~--------~nTkavf~Eti-gNP~~~v~D----ie~ia~iAh~~gvpliVDNT~at----p--yl~rP~~ 196 (426)
T COG2873 137 -PENFEAAID--------ENTKAVFAETI-GNPGLDVLD----IEAIAEIAHRHGVPLIVDNTFAT----P--YLCRPIE 196 (426)
T ss_pred -HHHHHHHhC--------cccceEEEEec-cCCCccccC----HHHHHHHHHHcCCcEEEecCCCc----c--eecchhh
Confidence 145666775 46789999998 555667766 89999999999999999998842 2 4455566
Q ss_pred CCCcee--ecccccCC-CCCcceEEEechHHHhhh
Q 003472 680 CVPDIA--CYGKLLTG-GVIPLAATLATNAVFDSF 711 (817)
Q Consensus 680 v~PDiv--tlgK~Lgg-Gy~PlsAvl~s~~i~d~~ 711 (817)
.-.||| ...|=+|| | -.||.+++..--+|+-
T Consensus 197 hGADIVvHS~TK~igGhG-t~iGG~iVD~G~FDw~ 230 (426)
T COG2873 197 HGADIVVHSATKYIGGHG-TAIGGVIVDGGKFDWT 230 (426)
T ss_pred cCCCEEEEeecccccCCc-cccceEEEeCCccccc
Confidence 678998 56898998 7 7888888877777776
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00073 Score=77.86 Aligned_cols=278 Identities=13% Similarity=0.072 Sum_probs=145.5
Q ss_pred CHHHHHHHHHHHHhcc--ccCCCCCCChHHHHHHHHHHhhcCCC-CcceEEEeCChHHHHHHHHHHHHHHhhcccccccc
Q 003472 418 QIELARDMGYTAARFG--HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~--~~~~~~~~~~~~~eLae~L~~~~~~~-~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~ 494 (817)
.+.+.+++.+.+.... .+....+..+....+++.+.+..+.. .-+.+++++++.+|...++.++ ..
T Consensus 50 p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~l~------~~----- 118 (433)
T PRK06855 50 PDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYGLL------RR----- 118 (433)
T ss_pred CHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHHhc------CC-----
Confidence 6777878887664321 11112234456667777776643311 0257999999999988876432 11
Q ss_pred ccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccc
Q 003472 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (817)
Q Consensus 495 ~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~ 574 (817)
...|+..+-+|++.........+.. .+++|-..
T Consensus 119 -----------Gd~Vlv~~P~Y~~~~~~~~~~~g~~------------------------------~v~v~~~~------ 151 (433)
T PRK06855 119 -----------EARVIGPSPAYSTHSSAEAAHAGYP------------------------------PVTYRLDP------ 151 (433)
T ss_pred -----------CCeEEEeCCCCchHHHHHHHhcCCe------------------------------EEEEeccc------
Confidence 1368888899987321111111110 01111000
Q ss_pred cccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcC
Q 003472 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (817)
Q Consensus 575 ~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~G 654 (817)
++ .|. -| .+.|++.+.. .+..-+.+++-|- .=-|.+. +.+.+++|.++|++||
T Consensus 152 ------~~---~~~--~d--------~~~l~~~~~~-----~~~~~~i~l~~P~--NPTG~~~-s~~~~~~l~~~a~~~~ 204 (433)
T PRK06855 152 ------EN---NWY--PD--------LDDLENKVKY-----NPSIAGILLINPD--NPTGAVY-PKEILREIVDIAREYD 204 (433)
T ss_pred ------cc---CCC--CC--------HHHHHHHHhc-----CCCceEEEEECCC--CCCCcCC-CHHHHHHHHHHHHHcC
Confidence 00 000 00 2556666652 2233456778883 3345544 8899999999999999
Q ss_pred CcEEEeeeeeccccccccchhhhcCCCCc---e--eecccccC-CCCCcceEEEec-----h---HHHhhhcCCCcccee
Q 003472 655 IPVIFDEVFTGFWRLGVETTADLLGCVPD---I--ACYGKLLT-GGVIPLAATLAT-----N---AVFDSFVGDSKLKAL 720 (817)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PD---i--vtlgK~Lg-gGy~PlsAvl~s-----~---~i~d~~~~~~~~~~~ 720 (817)
+++|.||+...+-..+..+. ....+.+| | -.|||.++ .| +=+|.+++. + .+++.+...
T Consensus 205 ~~II~De~Y~~l~~~~~~~~-sl~~~~~~~~~I~~~S~SK~~~~pG-lRiG~ii~p~~~~~~~~~~~~~~~~~~------ 276 (433)
T PRK06855 205 LFIICDEIYNNIVYNGKKTV-PLSEVIGDVPGIALKGISKELPWPG-SRCGWIEVYNADKDEVFKKYINSILNA------ 276 (433)
T ss_pred CEEEEeccccccccCCCCCC-CHHHHcCcCCeEEEecCccccCCCc-ceEEEEEEeCCchhhHHHHHHHHHHHh------
Confidence 99999999987732332111 01112233 3 27899997 78 788888872 2 223333110
Q ss_pred ecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEee-eeEEEEEEec
Q 003472 721 LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIELQA 793 (817)
Q Consensus 721 ~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~-Glm~gIel~~ 793 (817)
...+.+.+.++..++.+.| ++.++.+.+.+..+.+.+. ++.+.+.+++.+.+.-.+.. |+++-+.+.+
T Consensus 277 -~~~~~~~~~~~Q~a~~~~l---~~~~~~~~~~~~~~~~~~r-~~~~~~~L~~~~~~~~~~p~gg~~~w~~l~~ 345 (433)
T PRK06855 277 -KMIEVCSTTLPQMAIPRIM---SHPEYKNYLKERNKRYEKR-SNIAYEKLKDVPGLKVNRTNGAFYMTVVFED 345 (433)
T ss_pred -hccccCCChHHHHHHHHhh---cCCcHHHHHHHHHHHHHHH-HHHHHHHHhcCCCeeccCCCeeEEEeecccc
Confidence 1123345666666655554 3422222333333333332 22344555555433222333 5777777754
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00016 Score=80.35 Aligned_cols=162 Identities=12% Similarity=0.149 Sum_probs=95.3
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~ 696 (817)
..++.-| +.=-|...+ . +++.+++ ++++++|.||+..-|. +..+. ....-.+.++ +|||.+| .| +
T Consensus 141 ~i~i~nP--~NPTG~~~s-~---~~l~~l~-~~~~~ii~DE~Y~~f~--~~~~~-~~~~~~~~vi~~~S~SK~~~l~G-l 209 (335)
T PRK14808 141 VVFIPNP--NNPTGHVFE-R---EEIERIL-KTGAFVALDEAYYEFH--GESYV-DLLKKYENLAVIRTFSKAFSLAA-Q 209 (335)
T ss_pred EEEEeCC--CCCCCCCcC-H---HHHHHHH-hcCCEEEEECchhhhc--CCchH-HHHHhCCCEEEEEechhhccCcc-c
Confidence 4566666 344466664 3 4555556 5899999999997772 22111 1111123433 7899999 78 7
Q ss_pred cceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC
Q 003472 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (817)
Q Consensus 697 PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~ 776 (817)
=+|.+++.+++++.+... . .+++.+.++..++.++++.. + .+.+..+.+.+. ++.+.+.+++.+.
T Consensus 210 RvG~~v~~~~~~~~l~~~-------~-~~~~~~~~~q~a~~~~l~~~---~---~~~~~~~~~~~~-r~~l~~~L~~~g~ 274 (335)
T PRK14808 210 RIGYVVSSEKFIDAYNRV-------R-LPFNVSYVSQMFAKVALDHR---E---IFEERTKFIVEE-RERMKSALREMGY 274 (335)
T ss_pred ceEEEEeCHHHHHHHHHh-------c-CCCCCCHHHHHHHHHHHhCH---H---HHHHHHHHHHHH-HHHHHHHHHHCCC
Confidence 889999999999888532 1 23556677777777776522 1 122222222222 2234445555442
Q ss_pred cceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 777 VQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 777 V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.-....|.++-+.+... ....+...+.++||+
T Consensus 275 -~~~~~~g~f~~~~l~~~-------~~~~~~~~l~~~Gi~ 306 (335)
T PRK14808 275 -RITDSRGNFVFIFMEKE-------EKERLLEHLRAKNIA 306 (335)
T ss_pred -EECCCCCeEEEEeCCCc-------cHHHHHHHHHHCCeE
Confidence 22235678887777532 225677888888974
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.5e-05 Score=85.25 Aligned_cols=167 Identities=17% Similarity=0.180 Sum_probs=97.3
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~ 696 (817)
..+|.-| ..--|.+. +.+-+++|.+.|++ ++++|+||++.-|. +...........|.++ +|+|.+| .| +
T Consensus 148 lv~l~nP--nNPTG~~~-~~~~l~~l~~~~~~-~~~vivDEay~~f~--~~~s~~~~~~~~~n~iv~rSfSK~~glaG-l 220 (351)
T PRK01688 148 VVYVCSP--NNPTGNLI-NPQDLRTLLELTRG-KAIVVADEAYIEFC--PQASLAGWLAEYPHLVILRTLSKAFALAG-L 220 (351)
T ss_pred EEEEeCC--CCCCCCCC-CHHHHHHHHHhCCC-CcEEEEECchhhcC--CCCChHHHHhhCCCEEEEecchHhhcCHH-H
Confidence 4566777 45556665 67778888888876 68999999997663 2111222222245654 8999998 56 5
Q ss_pred cceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC
Q 003472 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (817)
Q Consensus 697 PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~ 776 (817)
-+|.+++++++++.+... ...|..+.++.++|.++|+ +.+ .+.+.+..+.+.+ -++.+.+.+.+.+.
T Consensus 221 RiGy~i~~~~~i~~l~~~--------~~~~~v~~~~~~~a~~~L~---~~~-~~~~~~~~~~~~~-~r~~l~~~L~~~~~ 287 (351)
T PRK01688 221 RCGFTLANEEVINLLLKV--------IAPYPLSTPVADIAAQALS---PQG-IAAMRERVAEINA-NRQWLIAALKEIPC 287 (351)
T ss_pred HHhHHhCCHHHHHHHHhc--------cCCCCCCHHHHHHHHHHHh---cch-HHHHHHHHHHHHH-HHHHHHHHHHhCCC
Confidence 677789999998887532 1235566666666666654 211 1223333333221 12234445555554
Q ss_pred cceE-EeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 777 VQRV-VALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 777 V~~V-rG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+..+ ...|.++-+.+.+ ...+...++++||+
T Consensus 288 ~~~~~ps~~nfi~~~~~~---------~~~l~~~L~~~gi~ 319 (351)
T PRK01688 288 VEQVFDSETNYILARFTA---------SSAVFKSLWDQGII 319 (351)
T ss_pred CCeECCCCCcEEEEEcCC---------HHHHHHHHHHCCeE
Confidence 3222 2335565565531 25677788888874
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00021 Score=87.69 Aligned_cols=278 Identities=11% Similarity=0.015 Sum_probs=153.0
Q ss_pred ChHHHHHHHHHHhhcCCCCcceEEE-eCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCc
Q 003472 442 YEPALECAELLLQGVGKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (817)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~~~~v~f-~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t 520 (817)
.+...+|.+.|++++| ++.+.+ -+||+.|+-+++... |.|+..+|. ++|++ +....+-||+.
T Consensus 542 lq~i~elq~~l~eLtG---md~~Sl~p~sGA~gE~A~Lmai-r~yh~~~Ge------------~~r~~-vLIp~saHgtN 604 (954)
T PRK12566 542 RAMIDELEAWLCAITG---FDAICMQPNSGAQGEYAGLLAI-RRYHRSRGQ------------SQRDI-CLIPSSAHGTN 604 (954)
T ss_pred HHHHHHHHHHHHHHHC---CCeEeecCCchHHHHHHHHHHH-HHHHHhcCC------------CCCCE-EEecccccccC
Confidence 4556789999999998 456655 559999988888888 788776664 44544 55566888866
Q ss_pred cccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHH
Q 003472 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (817)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~ 600 (817)
.......|.. .+..|..- -... |
T Consensus 605 pasa~~~Gie------------------------------Vv~Vp~D~-----------~G~i--------D-------- 627 (954)
T PRK12566 605 PASAQMAGMR------------------------------VVIVECDP-----------DGNV--------D-------- 627 (954)
T ss_pred HHHHHHCCCE------------------------------EEEeccCC-----------CCCc--------C--------
Confidence 5442222211 11111000 0001 0
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee-ccccccccchhhhcC
Q 003472 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLG 679 (817)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-GfGRtG~~~a~e~~g 679 (817)
.+.|++.+++ ...++++|++--. ...|+.. .-+++|.++|+++|+++++|=++. +.+..... -.
T Consensus 628 le~L~a~I~~-----~~~~laaVmiT~P-nt~Gv~e----~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~P-----g~ 692 (954)
T PRK12566 628 LDDLKAKAAA-----AGDRLSCLMITYP-STHGVYE----EGIREICEVVHQHGGQVYMDGANLNAQVGLARP-----AD 692 (954)
T ss_pred HHHHHHHhhc-----cCCCEEEEEEEec-CcCceec----chHHHHHHHHHHcCCEEEEEeeChhhccCCCCh-----hh
Confidence 2567777762 3567888877543 3444433 338999999999999999999985 22111110 12
Q ss_pred CCCceeecc--cccC----CCCCc-ceEEEechHHHhhhcCCC-------ccceeecccCCCCCHHHHHHHHHHHHHhcC
Q 003472 680 CVPDIACYG--KLLT----GGVIP-LAATLATNAVFDSFVGDS-------KLKALLHGHSYSAHALGCAAAAKSIKWFKD 745 (817)
Q Consensus 680 v~PDivtlg--K~Lg----gGy~P-lsAvl~s~~i~d~~~~~~-------~~~~~~h~~T~~gnPla~AAAlA~L~~l~~ 745 (817)
+-.|++++. |.++ +| .| ++.+.+++.+...+.+.. +.+....+.+..++.+.+.+|..-|..+=.
T Consensus 693 ~GADi~~~s~HKtf~~P~G~G-GP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~ 771 (954)
T PRK12566 693 IGADVSHMNLHKTFCIPHGGG-GPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMGP 771 (954)
T ss_pred cCCCEEEecCCcccCcCccCC-CCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHHCH
Confidence 345998775 8664 45 45 555577776666554321 011122334455665556666666655533
Q ss_pred cCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEee-e---eEEEEEEecCCCCCCcchHHHHHHHHHHcCCCC
Q 003472 746 PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-G---TLCAIELQAAGCNAGYCLIELFLYNFLTTGMHP 817 (817)
Q Consensus 746 ~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~-G---lm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~~ 817 (817)
+ ..++...+.....|+.++|.+ .++... .+. | --+.+.+..-+...+ .....+.+++++.|||.
T Consensus 772 e--Lk~aa~~ailnAnYla~rL~~---~~~v~~--~~~~~~~~hEfii~~~~l~~~~g-~~~~dvakRL~d~Giha 839 (954)
T PRK12566 772 Q--LADASEVAILSANYLANQLGG---AFPVLY--RGRNERVAHECILDLRPLKAQTG-ISEEDVAKRLMDYGFHA 839 (954)
T ss_pred H--HHHHHHHHHHHHHHHHHHhHh---hCCCCc--CCCCCCeeeEEEEEccccccccC-CCHHHHHHHHHHCCcEE
Confidence 2 233344334455666555533 233322 211 1 112333321110111 23356888888999873
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00025 Score=88.55 Aligned_cols=181 Identities=14% Similarity=0.115 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHhhcCCCCcceEEE-eCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCcc
Q 003472 443 EPALECAELLLQGVGKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (817)
Q Consensus 443 ~~~~eLae~L~~~~~~~~~~~v~f-~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~ 521 (817)
+...++.+.|++++| ++.+.+ .++|+.|+.++|..+ |.|...+|. ..| ++|....+-||+..
T Consensus 542 ~~i~e~q~~l~eltG---~d~~sl~~~~ga~ge~agL~a~-r~~~~~~G~------------~~r-~~vlis~~aH~snp 604 (954)
T PRK05367 542 ELIDQLEAWLAEITG---YDAVSLQPNAGAQGEYAGLLAI-RAYHESRGE------------GHR-DVCLIPSSAHGTNP 604 (954)
T ss_pred HHHHHHHHHHHHHHC---CCCEEECccHHHHHHHHHHHHH-HHHhhccCC------------CCC-CEEEEEchhhhhhH
Confidence 456688899999998 345554 568888888888666 776544432 123 45667788888766
Q ss_pred ccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHH
Q 003472 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (817)
Q Consensus 522 galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~ 601 (817)
.++...|.. +..++.... ..+ | .
T Consensus 605 ~sa~~~G~~----------------------------vv~v~~d~~-------------G~i--------D--------~ 627 (954)
T PRK05367 605 ASAVMAGMK----------------------------VVVVACDEN-------------GNI--------D--------L 627 (954)
T ss_pred HHHHHCCCE----------------------------EEEECCCCC-------------CCc--------C--------H
Confidence 554433221 011111000 000 0 2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC
Q 003472 602 SYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIv-EPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv 680 (817)
+.|++.+++ +..++++|++ -|- ..|++..+ +++|.++|+++|+++++|-++.+ +-.|.. .--..
T Consensus 628 ~~L~~~i~~-----~~~~la~V~it~ps--t~G~~e~~----I~eI~~i~h~~G~~v~VDgA~~~-al~~l~---~pg~~ 692 (954)
T PRK05367 628 DDLRAKAEE-----HADNLAAIMITYPS--THGVFEET----IREICEIVHEHGGQVYLDGANMN-AQVGLA---RPGDI 692 (954)
T ss_pred HHHHHHHhc-----cCCCeEEEEEEcCC--CCeeecCC----HHHHHHHHHHcCCEEEEECcChh-hccCCC---Chhhc
Confidence 556666753 2345666554 442 33444455 89999999999999999999952 112211 11122
Q ss_pred CCceeecc--cccC----CCCCc-ceEEEechHHHhhhcC
Q 003472 681 VPDIACYG--KLLT----GGVIP-LAATLATNAVFDSFVG 713 (817)
Q Consensus 681 ~PDivtlg--K~Lg----gGy~P-lsAvl~s~~i~d~~~~ 713 (817)
-.|+++++ |.++ +| -| +|.+.+++.+...+.+
T Consensus 693 GADi~~~s~HK~f~~P~G~G-GPg~G~l~vr~~l~p~lpg 731 (954)
T PRK05367 693 GADVSHLNLHKTFCIPHGGG-GPGVGPIGVKAHLAPFLPG 731 (954)
T ss_pred CCCEEEecCcccCCCCcCCC-CCceEEEeecccccccCCC
Confidence 36888775 8774 34 34 4456667776655543
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.7e-05 Score=86.35 Aligned_cols=167 Identities=17% Similarity=0.063 Sum_probs=86.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccc-------cccccch
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW-------RLGVETT 674 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfG-------RtG~~~a 674 (817)
+.|++.|.+ .+..+++.+.+|=.+...|| .+.|...+++++++|++||+.||.|=.+. +| |-.....
T Consensus 164 d~Le~~I~~----~~~~~~~lV~a~itvn~~GG-qpvs~~~m~~I~elA~~~Gl~Vi~DaAra-~gna~fI~~re~~y~~ 237 (460)
T PRK13237 164 DKLQALIDE----VGAENIAYICLAVTVNLAGG-QPVSMANMRAVRELCDKHGIKVFFDATRC-VENAYFIKEREEGYQD 237 (460)
T ss_pred HHHHHHhcc----ccCCccCceEEEEecccCCC-eeCCHHhHHHHHHHHHHcCCEEEEECcch-hcChhhhcccccccCC
Confidence 567777764 23345554444433244455 45578899999999999999999999984 43 1111111
Q ss_pred hh------hcCCCCceeecc--cccCCCCCcc-eEEEe-chHHHhhhcCCCccceee-cccCCCCCHH-HHHHHHHHHHH
Q 003472 675 AD------LLGCVPDIACYG--KLLTGGVIPL-AATLA-TNAVFDSFVGDSKLKALL-HGHSYSAHAL-GCAAAAKSIKW 742 (817)
Q Consensus 675 ~e------~~gv~PDivtlg--K~LggGy~Pl-sAvl~-s~~i~d~~~~~~~~~~~~-h~~T~~gnPl-a~AAAlA~L~~ 742 (817)
.. ..+---|++||| |.++ .|+ |++++ .+++++.+... .... .--||+|-.. -++|.--.|+.
T Consensus 238 ~~i~ei~~e~~s~aD~~t~S~~K~~~---~~~GG~i~t~D~eL~~~~r~~---~~~~eG~~tygg~~grd~~alAvgl~E 311 (460)
T PRK13237 238 KSIKEIVHEMFSYADGCTMSGKKDCL---VNIGGFLAMNDEELFDEAKEL---VVVYEGMPSYGGMAGRDMEAMAIGIEE 311 (460)
T ss_pred CcHhHHhhhccCcCcEEEEeCCCCCC---CCCceEEEECCHHHHHHHHHh---ccccCCCcCCCChhhhHHHHHHhHHHh
Confidence 00 011135888765 4443 344 33444 44555544321 0111 2237766433 22221112433
Q ss_pred hcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeE
Q 003472 743 FKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL 786 (817)
Q Consensus 743 l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm 786 (817)
..+++..+.-.+++++|++.|.+ ...|++..+.|.+.+
T Consensus 312 ~~~~~y~~~ri~~~~~l~~~L~~------~Gvpv~~p~ggH~v~ 349 (460)
T PRK13237 312 SVQYEYIEHRVGQVRYLGEKLLA------AGVPIVEPVGGHAVF 349 (460)
T ss_pred hchHHHHHHHHHHHHHHHHHHHH------CCCceecCCCceEEE
Confidence 43445555555666666664433 246667666664443
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00033 Score=86.42 Aligned_cols=280 Identities=11% Similarity=-0.006 Sum_probs=157.3
Q ss_pred hHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccc
Q 003472 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522 (817)
Q Consensus 443 ~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~g 522 (817)
+...+|.+.|++++|-+ .-.++.++|+.|+-+++..+ |.|+..+|. . +..++....+-||+.-.
T Consensus 530 q~i~elq~~l~eltGmd--~~Sl~p~aGA~gE~agL~ai-R~y~~~rge------------~-~R~~vlip~saHgtnPa 593 (939)
T TIGR00461 530 ELIAQLEKWLCSITGFD--AISLQPNSGAQGEYAGLRVI-RSYHESRGE------------N-HRNICLIPVSAHGTNPA 593 (939)
T ss_pred HHHHHHHHHHHHHHCCC--CcccCCchHHHHHHHHHHHH-HHHHHhcCC------------C-CCCEEEEEccccCcCHH
Confidence 45668999999999842 24567788888888888888 777655543 2 34667788899997654
Q ss_pred cccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHH
Q 003472 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602 (817)
Q Consensus 523 alslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~ 602 (817)
+....|.. +..++... -..+ | .+
T Consensus 594 sa~~~G~~----------------------------Vv~V~~d~-------------~G~i--------D--------le 616 (939)
T TIGR00461 594 SAAMAGMQ----------------------------VVPVNCDQ-------------DGNI--------D--------LV 616 (939)
T ss_pred HHHHCCCE----------------------------EEEeccCC-------------CCCc--------C--------HH
Confidence 43333211 01111100 0001 0 25
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeec-cccccccchhhhcCCC
Q 003472 603 YISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG-FWRLGVETTADLLGCV 681 (817)
Q Consensus 603 ~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TG-fGRtG~~~a~e~~gv~ 681 (817)
.|++.+++ +++++++|++--. .. -|.+.++ +++|.++|+++|..+++|=+|.. .+.. ...-...
T Consensus 617 ~L~~~i~~-----~~~~taaV~iT~p-st-~G~~e~~---I~eI~~iah~~G~~v~VDgAq~~al~~l-----~~Pg~~G 681 (939)
T TIGR00461 617 DLKNKAEQ-----HGDELAAVMVTYP-ST-HGVFEPT---IQHACDIVHSFGGQVYLDGANMNAQVGL-----TSPGDLG 681 (939)
T ss_pred HHHHHHhh-----cCCceEEEEEEeC-Cc-Cceeccc---HHHHHHHHHHcCCEEEEEecChhhCCCC-----CCccccC
Confidence 67777763 3457888777443 23 3554432 89999999999999999999953 2111 1111234
Q ss_pred Cceeec--ccccC-----CCCCcceEEEechHHHhhhcCCCc---------cce-eecccCCCCCHHHHHHHHHHHHHhc
Q 003472 682 PDIACY--GKLLT-----GGVIPLAATLATNAVFDSFVGDSK---------LKA-LLHGHSYSAHALGCAAAAKSIKWFK 744 (817)
Q Consensus 682 PDivtl--gK~Lg-----gGy~PlsAvl~s~~i~d~~~~~~~---------~~~-~~h~~T~~gnPla~AAAlA~L~~l~ 744 (817)
.|++++ .|.|+ || -=+|.+.+++++...+.++.- ... ..-.+.+.++.+.+-.+...|..+=
T Consensus 682 aDi~~~s~HKtf~~P~G~GG-Pg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG 760 (939)
T TIGR00461 682 ADVCHLNLHKTFCIPHGGGG-PGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMG 760 (939)
T ss_pred CCEEEecCCccCCCCCCCCC-CCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHHC
Confidence 699877 59887 44 346777778776555543210 000 0122335677777777778888875
Q ss_pred CcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeee-E--EEEEEecCCCCCCcchHHHHHHHHHHcCCCC
Q 003472 745 DPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGT-L--CAIELQAAGCNAGYCLIELFLYNFLTTGMHP 817 (817)
Q Consensus 745 ~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Gl-m--~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~~ 817 (817)
.+++. ++.+.+-....|+.++|.+ .++.+... ..|. + +-+++...+ ...-.....+.+++++.|+|+
T Consensus 761 ~~GL~-~~a~~ailnAnYl~~rL~~---~~~~l~~~-~~~~~~hEfv~~~~~~~-~~~g~~~~dIakrL~d~G~ha 830 (939)
T TIGR00461 761 NEGLP-KASVVAILNANYMATRLKD---HYPILFVG-TLKHVAHECILDLRPLK-AKTGIEAIDVAKRLQDYGFHA 830 (939)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhhc---cCcccccC-CCCceeEEEEEeccchh-hhcCCCHHHHHHHHHhCCeec
Confidence 54442 2233233334444444332 22322211 1122 2 222222111 011145788999999999985
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00021 Score=79.61 Aligned_cols=163 Identities=13% Similarity=0.104 Sum_probs=100.3
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~ 696 (817)
..+++-|- .=.|.+. +.+.++++.+.|.++++++|+||+...|.. ..- .....+ .++++ +|+|.+| .| +
T Consensus 133 ~v~l~nPn--NPTG~~~-s~~~l~~l~~~~~~~~~~vI~DEay~~~~~-~~s-~~~~~~-~~~vi~l~SfSK~~gl~G-l 205 (339)
T PRK06959 133 HLIVVNPN--NPTAERL-PAARLLRWHAQLAARGGTLIVDEAFADTLP-AAS-LAAHTD-RPGLVVLRSVGKFFGLAG-V 205 (339)
T ss_pred EEEEeCCC--CCCCCCC-CHHHHHHHHHHHHHcCCEEEEECCCccCCC-ccc-chhccC-CCCEEEEecChhhcCCcc-h
Confidence 57888883 4446655 666788888889899999999999876621 111 111111 24443 8999998 78 7
Q ss_pred cceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC
Q 003472 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (817)
Q Consensus 697 PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~ 776 (817)
-+|.+++.+++++.+... ...|.-+.++.+++.++|+ +.++.+++.+..+.-+++ +.+.++++..
T Consensus 206 RiGy~v~~~~li~~l~~~--------~~~~~vs~~~q~a~~~~L~---~~~~~~~~~~~~~~~r~~----l~~~L~~~g~ 270 (339)
T PRK06959 206 RAGFVLAAPALLAALRDA--------LGAWTVSGPARHAVRAAFA---DAAWQAAMRERLAADGAR----LAALLRAHGF 270 (339)
T ss_pred heEEEecCHHHHHHHHHh--------cCCCCCcHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHH----HHHHHHHCCC
Confidence 889999999999988532 1345567777777777763 333333333333333333 3344444432
Q ss_pred cceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 777 VQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 777 V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+...|.++-+.+. ....+...+.++||+
T Consensus 271 --~~~~~~~f~~~~~~---------~~~~l~~~l~~~GI~ 299 (339)
T PRK06959 271 --AVHATPLFSWTDDP---------RAAALHAALARRGIW 299 (339)
T ss_pred --CccCcceEEEEeCC---------CHHHHHHHHHhCCeE
Confidence 12223555555442 124577888889985
|
|
| >cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.7e-05 Score=86.02 Aligned_cols=92 Identities=16% Similarity=0.210 Sum_probs=65.3
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChH---HHHHHHHHHHHhCC--CcEEEEEEccCCC-CC
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGI---SGTISAYESLKLRG--YDVVAVVFEDHGL-VN 293 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i---~~~~~~~~~l~~~~--~~v~gvi~n~~~~-~~ 293 (817)
.+|+|||-..|++.++ .....+++.+.--||+|+....-++ +.+..+++.++..| .++.|+|+|+... ..
T Consensus 147 ~~DyVliD~~gdv~~g----gf~l~i~~~~ad~VIVVt~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~~~ 222 (329)
T cd02033 147 DFDYVLLDFLGDVVCG----GFGLPIARDMAQKVIVVGSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGTGE 222 (329)
T ss_pred cCCEEEEecCCcceec----cccchhhhcCCceEEEeCCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCcch
Confidence 4899999998765432 1223334444446788888888777 45677888888764 5789999999843 33
Q ss_pred HHHHHHhhcCCCcEEe-cCCCCCCC
Q 003472 294 EVPLMSYLRNRVPVLV-LPPLPQDS 317 (817)
Q Consensus 294 ~~~l~~~~~~~~pvlg-iP~~~~~~ 317 (817)
.+.+.+.+ ++|++| ||+.+...
T Consensus 223 ie~~ae~l--gi~vLg~IP~D~~V~ 245 (329)
T cd02033 223 AQAFAAHA--GIPILAAIPADEELR 245 (329)
T ss_pred HHHHHHHh--CCCEEEECCCCHHHH
Confidence 45566666 999999 99987754
|
This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster. |
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00049 Score=77.22 Aligned_cols=289 Identities=13% Similarity=0.117 Sum_probs=170.3
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alk 479 (817)
..+|+.+. -+.+|-. |.+.+++.+.++.+..+ ..+...+|.+.+++..+....+.|+..|...|..+..++
T Consensus 23 ~~i~LssN--enP~gp~--~~~~~~~~~~~~~~~rY-----Pd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~ 93 (356)
T COG0079 23 GIIKLSSN--ENPYGPP--PKVIEAIRAALDKLNRY-----PDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVR 93 (356)
T ss_pred cceeecCC--CCCCCCC--HHHHHHHHHHHHhhccC-----CCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHH
Confidence 36676662 3446654 89999998887744332 233567888888887762113578888888888888777
Q ss_pred HHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcc
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (817)
+.. . ++ .+|+...-+|.--...+... |.. +
T Consensus 94 ~~~-----~---------------~g-d~vl~~~Ptf~~Y~~~a~~~-g~~----------------------------~ 123 (356)
T COG0079 94 AFV-----E---------------PG-DTVLIPEPTFSMYEIAAQLA-GAE----------------------------V 123 (356)
T ss_pred Hhh-----c---------------CC-CEEEEcCCChHHHHHHHHhc-CCe----------------------------E
Confidence 762 1 11 47777777775321111111 110 1
Q ss_pred eeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp 639 (817)
+.++..+ +. .| .+.+...+. .+.-..+|+-|- --. |... +
T Consensus 124 ~~v~~~~-~~-----------~d------------------~~~~~~~~~-------~~~~lv~i~nPN-NPT-G~~~-~ 163 (356)
T COG0079 124 VKVPLKE-FR-----------LD------------------LDAILAAIR-------DKTKLVFLCNPN-NPT-GTLL-P 163 (356)
T ss_pred EEecccc-cc-----------cC------------------HHHHHHhhh-------cCCCEEEEeCCC-CCC-CCCC-C
Confidence 1222111 10 01 122323332 112246788885 444 4444 5
Q ss_pred HHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCc-ee---ecccccC-CCCCcceEEEechHHHhhhcCC
Q 003472 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA---CYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (817)
Q Consensus 640 ~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PD-iv---tlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~ 714 (817)
.+-++.+.+.|.+ ++++|+||+..=|+. --...... .++ ++ ||||++| .| +=+|.+++++++++.+..-
T Consensus 164 ~~~l~~l~~~~~~-~~~vVvDEAY~eF~~---~~~~~l~~-~~~nlivlRTfSKa~gLAG-lRlGy~ia~~~~i~~l~~v 237 (356)
T COG0079 164 REELRALLEALPE-GGLVVIDEAYIEFSP---ESSLELLK-YPPNLIVLRTFSKAFGLAG-LRVGYAIANPELIAALNKV 237 (356)
T ss_pred HHHHHHHHHhCCC-CcEEEEeCchhhcCC---chhhhhcc-CCCCEEEEEecHHhhhcch-hceeeccCCHHHHHHHHHh
Confidence 6677777888877 999999999987754 21222222 445 54 8999877 45 5677799999999998642
Q ss_pred CccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceE-EeeeeEEEEEEec
Q 003472 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-VALGTLCAIELQA 793 (817)
Q Consensus 715 ~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~V-rG~Glm~gIel~~ 793 (817)
-..|.-|-++.++|.++|+.- +..+...+....-++ ++.+.+++.+ +..| ...+-++-+++.+
T Consensus 238 --------r~p~~v~~~a~~aa~aal~~~---~~~~~~~~~~~~~r~----rl~~~l~~~~-~~~v~pS~aNFvlv~~~~ 301 (356)
T COG0079 238 --------RPPFNVSSPALAAAIAALRDA---DYLEESVERIREERE----RLYAALKALG-LFGVFPSQANFVLVRVPD 301 (356)
T ss_pred --------cCCCCCCHHHHHHHHHHcccH---HHHHHHHHHHHHHHH----HHHHHHHhCC-CCeecCCCCcEEEEECCC
Confidence 345777888888888887543 223333333333333 4556666666 3322 3336666666654
Q ss_pred CCCCCCcchHHHHHHHHHHcCCC
Q 003472 794 AGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 794 ~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
. . ...+...++++||+
T Consensus 302 ~------~-~~~l~~~L~~~gii 317 (356)
T COG0079 302 A------E-AAALAEALLKKGIL 317 (356)
T ss_pred c------c-HHHHHHHHHHCCEE
Confidence 2 3 45677777777764
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00043 Score=86.29 Aligned_cols=280 Identities=12% Similarity=0.003 Sum_probs=153.2
Q ss_pred hHHHHHHHHHHhhcCCCCcceEEEe-CChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCcc
Q 003472 443 EPALECAELLLQGVGKGWASRAYFS-DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (817)
Q Consensus 443 ~~~~eLae~L~~~~~~~~~~~v~f~-~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~ 521 (817)
+...++.+.|++++| ++.|.|. |+|+.+-++-+.++ |.|...+|. . +.++|....+-||+-.
T Consensus 568 ~~~~~~r~~la~i~g---~~~v~f~pnaga~ge~a~~~vi-~~~~~~~Gd------------~-~r~~vli~~~aH~sn~ 630 (993)
T PLN02414 568 EMFEDLGDLLCEITG---FDSFSLQPNAGAAGEYAGLMVI-RAYHLSRGD------------H-HRNVCIIPVSAHGTNP 630 (993)
T ss_pred HHHHHHHHHHHHHhC---CCeEEEcCCCcHHHHHHHHHHH-HHHHhccCC------------C-CCCEEEeCCCcCccCH
Confidence 456689999999998 5788775 55555444444444 555543332 1 2356777789999766
Q ss_pred ccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHH
Q 003472 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (817)
Q Consensus 522 galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~ 601 (817)
......|.. +..++..... .-| .
T Consensus 631 a~a~~~G~~----------------------------vv~v~~d~~G-----------~vD------------------l 653 (993)
T PLN02414 631 ASAAMCGMK----------------------------IVVVGTDAKG-----------NIN------------------I 653 (993)
T ss_pred HHHHHCCCE----------------------------EEEeccCCCC-----------CcC------------------H
Confidence 544442211 0111110000 001 2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCC
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (817)
+.|++.++. +.+++++|++-=. ...||...+ +++|.++|+++|+++++|=+|.- |......-....
T Consensus 654 e~L~~~i~~-----~~~~ta~V~vt~p-Sn~gg~e~~----I~eI~~iah~~Galv~vDgAq~~----a~~~l~~p~~~G 719 (993)
T PLN02414 654 EELRKAAEA-----HKDNLAALMVTYP-STHGVYEEG----IDEICDIIHDNGGQVYMDGANMN----AQVGLTSPGFIG 719 (993)
T ss_pred HHHHHHHhc-----cCCCeEEEEEECC-Cccccccch----HHHHHHHHHHcCCEEEEEecCHH----hccCcCCccccC
Confidence 567777762 3456788777654 677888877 99999999999999999999951 111111112234
Q ss_pred Cceeec--ccccC----CCCCcceEEEechHHHhhhcCCC--ccceee------cccC----CCCCHHHHHHHHHHHHHh
Q 003472 682 PDIACY--GKLLT----GGVIPLAATLATNAVFDSFVGDS--KLKALL------HGHS----YSAHALGCAAAAKSIKWF 743 (817)
Q Consensus 682 PDivtl--gK~Lg----gGy~PlsAvl~s~~i~d~~~~~~--~~~~~~------h~~T----~~gnPla~AAAlA~L~~l 743 (817)
.|++++ .|.++ +|=--+|.+.+++++...+.+.. ....+. ...| +.|+.+.+.+|.+-+..+
T Consensus 720 aD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~l 799 (993)
T PLN02414 720 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMM 799 (993)
T ss_pred CCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHH
Confidence 688866 68665 23133778888888777665421 101000 0123 335666666777777666
Q ss_pred cCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEe-eee-E--EEEEEecCCCCCCcchHHHHHHHHHHcCCCC
Q 003472 744 KDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-LGT-L--CAIELQAAGCNAGYCLIELFLYNFLTTGMHP 817 (817)
Q Consensus 744 ~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG-~Gl-m--~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~~ 817 (817)
=.+++ .++.+.+.....|+.++|.+ .++... .| .|. + +.+.+..-+...+ .....+.+++++.|||+
T Consensus 800 G~~Gl-~~~a~~a~~nAnYl~~rL~~---~~~~~~--~~~~~~~~hEfv~~~~~l~~~~g-~~~~di~krL~d~Giha 870 (993)
T PLN02414 800 GSEGL-TDASKIAILNANYMAKRLEG---HYPVLF--RGKNGTCAHEFIIDLRPFKNTAG-IEPEDVAKRLMDYGFHA 870 (993)
T ss_pred CHhHH-HHHHHHHHHHHHHHHHHHHh---hCCccc--cCCCCCeeeeEEEeccccccccC-CCHHHHHHHHHHcCcEE
Confidence 44333 22344455555555555433 222211 11 121 1 1122221100001 23366888889999974
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00032 Score=77.20 Aligned_cols=169 Identities=15% Similarity=0.156 Sum_probs=98.2
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccc-ccchhhhcC
Q 003472 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-VETTADLLG 679 (817)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG-~~~a~e~~g 679 (817)
.+.||+.+.+ +....-|++-| +.-+|- +...+.|++|.+||.+||+.+|.||||+=+=-.| +.+.+. .
T Consensus 147 ~~~LE~~~~~------~~vkl~iLCnP--HNP~Gr-vwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a--~ 215 (388)
T COG1168 147 FDALEKAFVD------ERVKLFILCNP--HNPTGR-VWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFA--S 215 (388)
T ss_pred HHHHHHHHhc------CCccEEEEeCC--CCCCCc-cccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchh--h
Confidence 3678888873 22346788888 455554 4589999999999999999999999998773345 222222 2
Q ss_pred CCCc-----eeec--ccccC-CCCCcceEEEechH-HHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcC--cCc
Q 003472 680 CVPD-----IACY--GKLLT-GGVIPLAATLATNA-VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD--PQT 748 (817)
Q Consensus 680 v~PD-----ivtl--gK~Lg-gGy~PlsAvl~s~~-i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~--~~l 748 (817)
+.|+ |+|+ +|++. .| +-+|.++.+.+ +.+.+... ..-....+-|.+++-|..++.+.=+. +.+
T Consensus 216 ls~~~a~~~it~~saSKtFNlaG-L~~a~~Ii~n~~lr~~~~~~-----l~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L 289 (388)
T COG1168 216 LSERFADNSITLTSASKTFNLAG-LKCAYIIISNRELRAKFLKR-----LKRNGLHGPSALGIIATEAAYNQGEPWLDEL 289 (388)
T ss_pred cChhhhcceEEEeeccccccchh-hhheeEEecCHHHHHHHHHH-----HHHhcCCCCchHHHHHHHHHHHhchHHHHHH
Confidence 3333 3343 68876 46 56666665544 33444321 11223445688888888887654322 122
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeE-EEEEEec
Q 003472 749 NHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL-CAIELQA 793 (817)
Q Consensus 749 ~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm-~gIel~~ 793 (817)
.+-+..|-..+.+.+. +..|.|.-..=.|.. .-+++..
T Consensus 290 ~~yl~~N~~~~~~~l~-------~~~P~v~v~~p~gTYL~WLD~r~ 328 (388)
T COG1168 290 LEYLKDNRDYVADFLN-------KHLPGVKVTEPQGTYLAWLDCRE 328 (388)
T ss_pred HHHHHHHHHHHHHHHH-------hhCCCcEEecCCCceeeeeeccc
Confidence 3333333333333221 244666555556664 3455544
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0008 Score=77.91 Aligned_cols=182 Identities=14% Similarity=0.167 Sum_probs=97.7
Q ss_pred CCcEEEEEE-ccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch--hh---hcCC-C-Cc-e---
Q 003472 617 SGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT--AD---LLGC-V-PD-I--- 684 (817)
Q Consensus 617 ~~~iAAvIv-EPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a--~e---~~gv-~-PD-i--- 684 (817)
+.++.++++ -| +.--|... +++.+++|.++|++|++.+|.||+...+--.+..|. .+ ..+. . ++ +
T Consensus 198 ~~~vk~lll~nP--~NPtG~~~-s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi 274 (447)
T PLN02607 198 NIRVRGVLITNP--SNPLGATV-QRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIV 274 (447)
T ss_pred CCCeeEEEEeCC--CCCcCccc-CHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEE
Confidence 345655544 45 33345544 789999999999999999999999976311111111 11 1121 1 44 2
Q ss_pred eecccccC-CCCCcceEEEe-chHHHhhhcCCCccceeecccCCC-CCHHHHHHHHHHHHHhcCcCchhc-HHHHHHHHH
Q 003472 685 ACYGKLLT-GGVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYS-AHALGCAAAAKSIKWFKDPQTNHN-IIPERRILR 760 (817)
Q Consensus 685 vtlgK~Lg-gGy~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T~~-gnPla~AAAlA~L~~l~~~~l~~~-l~~~~~~lg 760 (817)
..+||.+| .| +=+|.+++ .+++.+.+... +.|. -+.++..+ +..+++++++.++ +.++.+++.
T Consensus 275 ~s~SK~fg~~G-lRvG~ivs~n~~l~~~~~~~---------~~~~~~s~~~q~~---~~~~L~d~~~~~~~l~~~r~~l~ 341 (447)
T PLN02607 275 YSLSKDLGLPG-FRVGTIYSYNDKVVTTARRM---------SSFTLVSSQTQHL---LASMLSDEEFTENYIRTNRERLR 341 (447)
T ss_pred EcchhcCCCCc-ceEEEEEEcCHHHHHHHHHH---------hhcCCCCHHHHHH---HHHHhCCchhHHHHHHHHHHHHH
Confidence 37899998 78 78998887 56676655321 2222 23333333 3344556554432 333334443
Q ss_pred HHHHHHHHHHHHcCCCcceEEe-eeeEEEEEEecCCCCCCcchHHHHHHHHHH-cCCC
Q 003472 761 ELWDLELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYCLIELFLYNFLT-TGMH 816 (817)
Q Consensus 761 ~~l~~~l~~~l~~~p~V~~VrG-~Glm~gIel~~~~~~~~~~~~~~~~~~~l~-~Gv~ 816 (817)
+... .+.+.++++.+ .-++. -|+++-++|.+.-.....+....+..++++ .||+
T Consensus 342 ~~~~-~~~~~L~~~gi-~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~ 397 (447)
T PLN02607 342 KRYE-MIVQGLRRAGI-ECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLN 397 (447)
T ss_pred HHHH-HHHHHHHhCCC-CcccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEE
Confidence 3222 24445555543 33344 488899998542101112222334445554 5763
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00012 Score=77.67 Aligned_cols=245 Identities=13% Similarity=0.034 Sum_probs=135.1
Q ss_pred CHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 003472 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~ 497 (817)
-.++.+|+.++.---.. -+..+...+|+++.++++|+ +-.+|++||+..|..||+.= ..++|.
T Consensus 35 TdeMr~am~eA~vgDdV----yGeD~tt~rLE~~vA~l~GK---EAgLFv~SGTmgNllaIm~H----c~~rg~------ 97 (384)
T KOG1368|consen 35 TDEMRRAMAEASVGDDV----YGEDPTTNRLEQRVAELFGK---EAGLFVPSGTMGNLLAIMVH----CHQRGS------ 97 (384)
T ss_pred hHHHHHHHhhcccCccc----ccCCccHHHHHHHHHHHhCc---cceeeecccccccHHHHHHH----hcCCCc------
Confidence 35677777765432111 12345677999999999995 67999999999999999754 122221
Q ss_pred CCccccccceEEEEEcCCccCCccccccc-cCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccc
Q 003472 498 KDTTEKCIELKVLALKGSYHGDTLGAMEA-QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (817)
Q Consensus 498 ~~~~~~~~r~~II~~~gsyHG~t~galsl-t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~ 576 (817)
.-|+....-.|=+-.|+++. +|... .| ..+.++.+
T Consensus 98 ---------eii~gd~~HI~~~E~gg~s~l~gv~~------------------~t---------v~~e~dgt-------- 133 (384)
T KOG1368|consen 98 ---------EIIVGDRAHIHRYEQGGISQLAGVHV------------------RT---------VKNENDGT-------- 133 (384)
T ss_pred ---------eEEeccchheeehhccChhhhcccee------------------Ee---------eeeCCCCe--------
Confidence 12333333333322222221 11100 00 00111111
Q ss_pred cccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCc
Q 003472 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (817)
Q Consensus 577 d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~Gil 656 (817)
+ .++.+|+.+..-....+..-...|.+|-- +...|-...|-+|+.++.+||+++|+.
T Consensus 134 ------m----------------~ledIe~~ir~~~GD~H~p~T~LIclENT-~~~~Gg~vlPle~~~~v~~lak~~glk 190 (384)
T KOG1368|consen 134 ------M----------------DLEDIEAAIRVPKGDCHMPPTKLICLENT-HNNCGGKVLPLEELDRVKALAKRHGLK 190 (384)
T ss_pred ------e----------------eHHHHHHhhcCCCCCccCCCceEEEeecc-ccccCceEeeHHHHHHHHHHHhccCCe
Confidence 1 03667777763111122234568889986 554444455899999999999999998
Q ss_pred EEEeeeeeccccccccchhhhcCC-------CCce--eecccccCCCCCcc-eEEEechHHHhhhcCCCccceeecccCC
Q 003472 657 VIFDEVFTGFWRLGVETTADLLGC-------VPDI--ACYGKLLTGGVIPL-AATLATNAVFDSFVGDSKLKALLHGHSY 726 (817)
Q Consensus 657 LI~DEV~TGfGRtG~~~a~e~~gv-------~PDi--vtlgK~LggGy~Pl-sAvl~s~~i~d~~~~~~~~~~~~h~~T~ 726 (817)
|=+|-+-- |-+.-..|| .-|- +|+|||||. |+ |.++++++.++......+ ..|.-+
T Consensus 191 LH~DGARi-------~NAavasgV~vk~i~~~fDSVsiCLSKglgA---PVGSViVG~k~FI~kA~~~RK----alGGGm 256 (384)
T KOG1368|consen 191 LHMDGARI-------FNAAVASGVPVKKICSAFDSVSICLSKGLGA---PVGSVIVGSKDFIDKARHFRK----ALGGGM 256 (384)
T ss_pred eecchhhh-------hhHHHHcCCCHHHHHHhhhhhhhhhhccCCC---CcccEEEccHHHHHHHHHHHH----HhcCch
Confidence 88775421 222223333 2354 499999985 33 467788887765421111 123333
Q ss_pred CCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHH
Q 003472 727 SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILREL 762 (817)
Q Consensus 727 ~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~ 762 (817)
--.-+-||||+-+|+.--. +...-.+++..+.++
T Consensus 257 RQsGvLaaaaLval~~~~~--~L~~dHk~A~~lAe~ 290 (384)
T KOG1368|consen 257 RQSGVLAAAALVALDENVP--LLRADHKRAKELAEY 290 (384)
T ss_pred hHHHHHHHHHHHHhhcchH--HHHHHHHHHHHHHHH
Confidence 3345677777777654311 223334555555553
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00094 Score=75.30 Aligned_cols=88 Identities=11% Similarity=0.137 Sum_probs=59.6
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchh-hhc---CC-C-Ccee---eccccc
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLL---GC-V-PDIA---CYGKLL 691 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~-e~~---gv-~-PDiv---tlgK~L 691 (817)
+.+|.-| +.=.|.+. +.+.+++|.++|+++|+++|.||+...|...+..... ... +. . +.++ +|||.+
T Consensus 158 ~v~i~nP--~NPTG~~~-s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~ 234 (374)
T PRK05839 158 LVILNSP--NNPTGRTL-SLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRS 234 (374)
T ss_pred EEEEeCC--CCCcCccc-CHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEecccccc
Confidence 3455666 44456655 7888999999999999999999998766211221111 110 11 1 2333 789997
Q ss_pred C-CCCCcceEEEechHHHhhhc
Q 003472 692 T-GGVIPLAATLATNAVFDSFV 712 (817)
Q Consensus 692 g-gGy~PlsAvl~s~~i~d~~~ 712 (817)
+ .| +-+|.+++++++.+.+.
T Consensus 235 ~~~G-lRiG~ii~~~~~~~~~~ 255 (374)
T PRK05839 235 SAPG-LRSGFIAGDASILKKYK 255 (374)
T ss_pred CCcc-ceeEEEecCHHHHHHHH
Confidence 5 57 78999999999988774
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.5e-05 Score=83.95 Aligned_cols=196 Identities=16% Similarity=0.124 Sum_probs=110.6
Q ss_pred CHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 003472 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~ 497 (817)
+|++.+|+.+.. .++.. -...+...+|++++++++|. +.++|+.||+.||..|++...+ ++
T Consensus 8 ~~~m~~a~~~a~--~gd~~--Yg~D~~~~~l~~~i~~l~g~---e~a~f~~sGT~An~~al~~~~~-----~~------- 68 (290)
T PF01212_consen 8 TPAMLEAMAAAN--VGDDA--YGEDPTTARLEERIAELFGK---EAALFVPSGTMANQLALRAHLR-----PG------- 68 (290)
T ss_dssp -HHEEHHHHHTT--SB-CC--TTSSHHHHHHHHHHHHHHTS---SEEEEESSHHHHHHHHHHHHHH-----TT-------
T ss_pred CHHHHHHHHccc--cCCcc--cCCChhHHHHHHHHHHHcCC---CEEEEeCCCChHHHHHHHHHHh-----cC-------
Confidence 899999994433 22222 23478889999999999994 6788999999999999998831 11
Q ss_pred CCccccccceEEEEE-cCCccCCccccc-cccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhccccc
Q 003472 498 KDTTEKCIELKVLAL-KGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (817)
Q Consensus 498 ~~~~~~~~r~~II~~-~gsyHG~t~gal-slt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~ 575 (817)
..||.- ..-+|....++. .++|. ..++.|....
T Consensus 69 ---------~~vi~~~~aHi~~~E~ga~~~~~G~------------------------------~~~~l~~~~~------ 103 (290)
T PF01212_consen 69 ---------ESVICADTAHIHFDETGAIEELSGA------------------------------KLIPLPSDDD------ 103 (290)
T ss_dssp ---------EEEEEETTEHHHHSSTTHHHHHTTC------------------------------EEEEEBECTG------
T ss_pred ---------CceeccccceeeeeccchhhHhcCc------------------------------EEEECCCccc------
Confidence 123332 222333333433 22321 1111221100
Q ss_pred ccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCC
Q 003472 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (817)
Q Consensus 576 ~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~Gi 655 (817)
..+ ..+.|++.++... .+..+++.|.+|-- ....|-.+.+.+.+++|+++|++||+
T Consensus 104 -----G~l----------------~~~~l~~~~~~~~--~h~~~~~~v~le~t-~~~~GG~~~s~~el~ai~~~a~~~gl 159 (290)
T PF01212_consen 104 -----GKL----------------TPEDLEAAIEEHG--AHHPQPAVVSLENT-TELAGGTVYSLEELRAISELAREHGL 159 (290)
T ss_dssp -----TBB-----------------HHHHHHHHHHHT--GTSGGEEEEEEESS-BTTTTSB---HHHHHHHHHHHHHHT-
T ss_pred -----CCC----------------CHHHHHHHhhhcc--ccCCCccEEEEEec-CcCCCCeeCCHHHHHHHHHHHHhCce
Confidence 000 0255666666421 13467999999986 44433445588999999999999999
Q ss_pred cEEEeeeeeccccccc-----cchhhhcCCCCceee--cccccCCCCCcceE-EEechHHHh
Q 003472 656 PVIFDEVFTGFWRLGV-----ETTADLLGCVPDIAC--YGKLLTGGVIPLAA-TLATNAVFD 709 (817)
Q Consensus 656 lLI~DEV~TGfGRtG~-----~~a~e~~gv~PDivt--lgK~LggGy~PlsA-vl~s~~i~d 709 (817)
.|.+|=. |... +.....+----|+++ +.|.+| .|.++ ++++++.++
T Consensus 160 ~lhmDGA-----Rl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g---~~~Gavl~~~~~~i~ 213 (290)
T PF01212_consen 160 PLHMDGA-----RLANAAAALGVSLAEIAAGADSVSFGGTKNGG---APGGAVLAGNKEFIA 213 (290)
T ss_dssp EEEEEET-----THHHHHCHHHHHHHHHHTTSSEEEEETTSTT----SSSEEEEEESHHHHH
T ss_pred EEEEehh-----hHHHhhhcccccHHHHhhhCCEEEEEEEcccc---cccceEEEechHHHH
Confidence 9999954 3221 001111112458774 456543 44444 556777444
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.6e-05 Score=76.79 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=61.5
Q ss_pred CEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC--C----HH
Q 003472 222 ILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV--N----EV 295 (817)
Q Consensus 222 d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~--~----~~ 295 (817)
|+|||.+.+++... ........ --+|+|+.....++..+...++.++..+.+..++|+|++... . .+
T Consensus 64 d~viiD~p~~~~~~------~~~~l~~a-d~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIERG------FITAIAPA-DEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcHH------HHHHHHhC-CcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhhHHH
Confidence 89999998764322 22222222 248899999999999999999999887788999999998322 1 24
Q ss_pred HHHHhhcCCCcEEe-cCCCCC
Q 003472 296 PLMSYLRNRVPVLV-LPPLPQ 315 (817)
Q Consensus 296 ~l~~~~~~~~pvlg-iP~~~~ 315 (817)
.+++++ +.|+++ ||+.+.
T Consensus 137 ~~~~~~--~~~v~~~Ip~~~~ 155 (179)
T cd02036 137 DIEEIL--GVPLLGVIPEDPA 155 (179)
T ss_pred HHHHHh--CCCEEEEecCCHH
Confidence 456666 899999 887554
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00063 Score=78.29 Aligned_cols=255 Identities=13% Similarity=0.078 Sum_probs=138.1
Q ss_pred ChHHHHHHHHHHhhcCCCCcceEEEeCChH-HHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCc
Q 003472 442 YEPALECAELLLQGVGKGWASRAYFSDNGS-TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (817)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~~~~v~f~~SGs-eA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t 520 (817)
.....++++.+++++|......++++++|+ .|+..|+..+ |.. + +....||.-..+ |-++
T Consensus 104 ~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~al-r~~-~----------------~~gd~VI~p~~t-h~S~ 164 (444)
T TIGR03531 104 YKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSAL-RHK-R----------------PKAKYVIWPRID-QKSC 164 (444)
T ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHc-CCc-C----------------CCCCEEEEECcC-hHHH
Confidence 345567788888888742223688999999 6888887766 321 0 011245555554 7777
Q ss_pred cccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHH
Q 003472 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (817)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~ 600 (817)
.-++.+.|.... +++. +..+.. |+ + |
T Consensus 165 ~kAi~~~G~~pv--------------~Vd~-----------~~d~~~------------~~-i--------D-------- 190 (444)
T TIGR03531 165 IKAISTAGFEPR--------------VIET-----------VLDGDE------------LT-T--------D-------- 190 (444)
T ss_pred HHHHHHcCCeEE--------------Eeee-----------eecCcC------------CC-c--------C--------
Confidence 777666653210 0000 000111 11 0 0
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhh---
Q 003472 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL--- 677 (817)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~--- 677 (817)
.+.|++.|.+ ..+..+.+|+..|- .+..|.. +-+++|.++|++||+++|+|+++. ++- .+..+.
T Consensus 191 ~e~Le~aIt~----~~~kai~~Vv~Tp~-t~~~g~~----ddL~eIa~la~k~gI~lIvDaAyg-~~~---~~~~~~~~~ 257 (444)
T TIGR03531 191 VEDIERAIEE----IGPDNILCVLSTTS-CFAPRSP----DDIEEIAKICANYDIPHIVNNAYG-LQS---NKYMELINK 257 (444)
T ss_pred HHHHHHHHHh----ccCCCEEEEEEcCC-cCCCcch----hCHHHHHHHHHHcCCEEEEECcCc-CcC---hhhhhhhhc
Confidence 2567777763 22356788887774 3333333 349999999999999999999994 311 111111
Q ss_pred -cCC-CCceeec--ccccCCCCCcceEEEe-chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcH
Q 003472 678 -LGC-VPDIACY--GKLLTGGVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (817)
Q Consensus 678 -~gv-~PDivtl--gK~LggGy~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l 752 (817)
..+ ..|++++ .|.+... ..-+++++ .+++++.+... ..+ .....| +..+..+.+ .+-.++ ++++
T Consensus 258 g~~~Grad~vv~s~hK~l~~p-g~Gg~I~~~d~el~~~i~~~------y~g-~~~~s~-~~~~~~~ll-~~G~~g-~~~l 326 (444)
T TIGR03531 258 AIKVGRVDAVVSSTDKNFMVP-VGGAIIYSFDENFIQEISKS------YPG-RASASP-SLDVLITLL-SLGSKG-YLEL 326 (444)
T ss_pred cccccCCCeEEEeCccCCCCC-CCEEEEEECCHHHHHHHHHh------ccC-CCCChH-HHHHHHHHH-HhCHHH-HHHH
Confidence 112 3577755 5766531 11344546 56776666321 111 222222 222222222 332222 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCC-cceEEeeeeEEEEEEec
Q 003472 753 IPERRILRELWDLELIQQISSHRT-VQRVVALGTLCAIELQA 793 (817)
Q Consensus 753 ~~~~~~lg~~l~~~l~~~l~~~p~-V~~VrG~Glm~gIel~~ 793 (817)
.+.-..+.+++.+.|.+..+++.. +-++...-.-+++.+..
T Consensus 327 i~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~ 368 (444)
T TIGR03531 327 LKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLST 368 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEeccc
Confidence 455555666677777666666653 66676666777777764
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00073 Score=75.29 Aligned_cols=162 Identities=14% Similarity=0.134 Sum_probs=87.1
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCCc
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIP 697 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~P 697 (817)
.++.-| +.--|.+.+ .++|.++|++ ++++|+||++.-| ..|..-.....+ .++++ +++|.+| .| +-
T Consensus 143 i~l~np--~NPTG~~~~----~~~l~~l~~~-~~~iIvDe~y~~~-~~~~~~~l~~~~-~~~~i~i~S~SK~~~l~G-lR 212 (349)
T PRK07908 143 VVIGNP--TNPTSVLHP----AEQLLALRRP-GRILVVDEAFADA-VPGEPESLAGDD-LPGVLVLRSLTKTWSLAG-LR 212 (349)
T ss_pred EEEcCC--CCCCCCCcC----HHHHHHHHhc-CCEEEEECcchhh-ccCCcccccccc-CCCEEEEeecccccCCcc-ce
Confidence 344466 455677776 3577888865 7788899999655 223321111122 23443 6799998 78 78
Q ss_pred ceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 003472 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (817)
Q Consensus 698 lsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V 777 (817)
+|.+++++++++.+.... ..+..+++..+++.+.++- ......+++.+..+..++ .+.+.++++. +
T Consensus 213 iG~~~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~r~----~l~~~L~~~~-~ 278 (349)
T PRK07908 213 VGYALGAPDVLARLTRGR--------AHWPVGTLQLEAIAACCAP-RAVAEAAADAARLAADRA----EMVAGLRAVG-A 278 (349)
T ss_pred eeeeecCHHHHHHHHhcC--------CCCCccHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHH----HHHHHHHhCC-c
Confidence 999999999988875321 1234455555544333320 000111222222222233 3344454442 2
Q ss_pred ceEE-eeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 778 QRVV-ALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 778 ~~Vr-G~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.-+. .-|.++-+.+.+ ...+...+.++||+
T Consensus 279 ~~~~p~~g~~~~~~~~~---------~~~~~~~l~~~gI~ 309 (349)
T PRK07908 279 RVVDPAAAPFVLVRVPD---------AELLRKRLRERGIA 309 (349)
T ss_pred EeccCCCceEEEEECCc---------HHHHHHHHHhCCEE
Confidence 1112 347777776643 23455666677763
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0021 Score=74.90 Aligned_cols=181 Identities=13% Similarity=0.148 Sum_probs=97.2
Q ss_pred cEE-EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch--hhhc------CC-CCc----e
Q 003472 619 CIG-ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT--ADLL------GC-VPD----I 684 (817)
Q Consensus 619 ~iA-AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a--~e~~------gv-~PD----i 684 (817)
++. .+|+-| +.=-|.+. +.+.+++|.++|++||+++|.||+...+--.+..+. .+.. +. .++ +
T Consensus 191 ~~k~v~l~nP--~NPTG~~~-s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l 267 (468)
T PLN02450 191 KVKGVLITNP--SNPLGTTT-TRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIV 267 (468)
T ss_pred CeeEEEEecC--CCCCCccc-CHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEE
Confidence 454 455556 33345554 788999999999999999999999976522332221 1111 11 123 3
Q ss_pred eecccccC-CCCCcceEEEechH-HHhhhcCCCccceeecccCC-CCCHHHHHHHHHHHHHhcCcCchh-cHHHHHHHHH
Q 003472 685 ACYGKLLT-GGVIPLAATLATNA-VFDSFVGDSKLKALLHGHSY-SAHALGCAAAAKSIKWFKDPQTNH-NIIPERRILR 760 (817)
Q Consensus 685 vtlgK~Lg-gGy~PlsAvl~s~~-i~d~~~~~~~~~~~~h~~T~-~gnPla~AAAlA~L~~l~~~~l~~-~l~~~~~~lg 760 (817)
-+|||.+| .| +=+|.+++.++ +.+.+... .++ ..+.++..++.+. ++++++.+ .+.++.+.+.
T Consensus 268 ~S~SK~~~l~G-lRiG~li~~~~~l~~~~~~~---------~~~~~~s~~~Q~a~~~~---L~~~~~~~~~l~~~~~~l~ 334 (468)
T PLN02450 268 YSLSKDLGLPG-FRVGAIYSNDEMVVSAATKM---------SSFGLVSSQTQYLLSAL---LSDKKFTKNYLEENQKRLK 334 (468)
T ss_pred EeccccCCCCC-ccEEEEEECCHHHHHHHHHH---------hhcCCCCHHHHHHHHHH---hCCchhHHHHHHHHHHHHH
Confidence 38999998 88 79999999754 45544211 112 2345555554444 44433322 2333344443
Q ss_pred HHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHH-cCCC
Q 003472 761 ELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLT-TGMH 816 (817)
Q Consensus 761 ~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~-~Gv~ 816 (817)
+. ++.+.+.++++.+....-.-|+++-+.+.+.-.....+....+..++++ +||.
T Consensus 335 ~r-r~~l~~~L~~~gi~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~ 390 (468)
T PLN02450 335 QR-QKKLVSGLEAAGIKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLN 390 (468)
T ss_pred HH-HHHHHHHHHHcCCcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEE
Confidence 32 2234455555543111123477888888542111122222345555554 6763
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0027 Score=73.76 Aligned_cols=307 Identities=16% Similarity=0.162 Sum_probs=182.6
Q ss_pred ceeecccccccc-CCCCCCCHHHHHHHHHHHHhcccc-----CCCCCCChHHHHHHHHHHhhcCCC-CcceEEEeCChHH
Q 003472 400 QQFDACASWWTQ-GPDATLQIELARDMGYTAARFGHV-----MFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGST 472 (817)
Q Consensus 400 ~ylD~~sg~~~~-~LGh~~hP~V~~Ai~~q~~~~~~~-----~~~~~~~~~~~eLae~L~~~~~~~-~~~~v~f~~SGse 472 (817)
..+||..|+-.. .+. ...+.+++.+.+...... ....+..+...++++.+...-|-. ..+.++++++..+
T Consensus 90 ~~i~f~~g~p~~~~fp---~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~ 166 (459)
T COG1167 90 SVIDFAGGLPDPSLFP---LEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQ 166 (459)
T ss_pred ceecCCCCCCCcccCC---HHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHH
Confidence 678887765221 223 346666666555433221 111233456667888887322211 1247888888888
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCc
Q 003472 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (817)
Q Consensus 473 A~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (817)
|.+..+++.. . . ...|++=+-+|||.. .++...|.
T Consensus 167 al~l~~~~l~----~-p----------------Gd~v~vE~PtY~~~~-~~~~~~g~----------------------- 201 (459)
T COG1167 167 ALDLLLRLLL----D-P----------------GDTVLVEDPTYPGAL-QALEALGA----------------------- 201 (459)
T ss_pred HHHHHHHHhC----C-C----------------CCEEEEcCCCcHHHH-HHHHHcCC-----------------------
Confidence 8887777761 1 1 135666677888732 12222111
Q ss_pred ccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003472 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (817)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~ 632 (817)
-.+++|..- + +.+ .+.||+.+++ .++.++.+-|..|.=
T Consensus 202 -------~~~~vp~d~------------~--------G~~--------~e~le~~~~~-------~~~k~~y~~P~~qNP 239 (459)
T COG1167 202 -------RVIPVPVDE------------D--------GID--------PEALEEALAQ-------WKPKAVYVTPTFQNP 239 (459)
T ss_pred -------cEEecCCCC------------C--------CCC--------HHHHHHHHhh-------cCCcEEEECCCCCCC
Confidence 112222100 0 011 2567777763 378899999987777
Q ss_pred CCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch--hhhcCCCCc----eeecccccCCCCCcceEEEechH
Q 003472 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT--ADLLGCVPD----IACYGKLLTGGVIPLAATLATNA 706 (817)
Q Consensus 633 gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a--~e~~gv~PD----ivtlgK~LggGy~PlsAvl~s~~ 706 (817)
-|... +.+=-++|.++|++||+.+|=||+..=| |....-. ...++ .++ +-+|||.|.=| +=+|.+++.++
T Consensus 240 tG~tm-s~~rR~~Ll~lA~~~~~~IIEDD~y~el-~~~~~p~~~l~~ld-~~~rViy~gSFSK~l~Pg-lRlG~vv~p~~ 315 (459)
T COG1167 240 TGVTM-SLERRKALLALAEKYDVLIIEDDYYGEL-RYDGPPPPPLKALD-APGRVIYLGSFSKTLAPG-LRLGYVVAPPE 315 (459)
T ss_pred CCCcc-CHHHHHHHHHHHHHcCCeEEeeCcchhh-hcCCCCCCChHhhC-CCCCEEEEeeehhhcccc-cceeeeeCCHH
Confidence 78777 7888999999999999999999999544 4432211 12221 234 33999999998 78999999999
Q ss_pred HHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC-CCcceEEe--e
Q 003472 707 VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH-RTVQRVVA--L 783 (817)
Q Consensus 707 i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~-p~V~~VrG--~ 783 (817)
+++.+... .+..+.+.+.+..++...- +.+..+..++.+......++ ++.+.+.++++ |....+.. -
T Consensus 316 ~~~~~~~~------k~~~~~~~s~~~Q~~la~~---l~~G~~~~hl~~lR~~y~~r-r~~l~~~L~~~~~~~~~~~~p~g 385 (459)
T COG1167 316 LIEKLLRL------KQAADLGPSSLSQAALAAF---LLSGHYDRHLRRLRREYARR-RDALLEALAEYLPELATWTRPEG 385 (459)
T ss_pred HHHHHHHH------HHHhcCCCChHHHHHHHHH---HHcCCHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCeeeecCCc
Confidence 99888532 2445566666665544333 33323333443333333332 22345556555 42333322 3
Q ss_pred eeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 784 GTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 784 Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
|+++-+++.+. -....++.+++++|+.
T Consensus 386 G~flwl~l~~~------~~~~~l~~~a~~~gv~ 412 (459)
T COG1167 386 GLFLWLELPEG------IDARELLAAALEKGVV 412 (459)
T ss_pred eEEEEEEcCCC------CCHHHHHHHHHHCCCE
Confidence 89999999876 3467899999999873
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00098 Score=83.50 Aligned_cols=228 Identities=12% Similarity=0.032 Sum_probs=130.1
Q ss_pred EEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCC--cceEE
Q 003472 388 SVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGW--ASRAY 465 (817)
Q Consensus 388 ~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~--~~~v~ 465 (817)
++++.+|. .+|++..+- ..++ . .|.|.+|+.+.+.+..+. ....+....+++.+++..|-.. -+.++
T Consensus 690 ~~~~~~g~----~vI~LsinE--~d~p-p-Pp~V~eAi~eal~~~~~s---~g~pdlr~aLa~~la~~~Gv~~d~~e~II 758 (1082)
T PLN02672 690 SVSGSQES----SLIHMDVDE--SFLP-V-PSAVKASIFESFVRQNIS---ESETDPRPSILQFIKSNYGFPTDSCTEFV 758 (1082)
T ss_pred CCcccCCC----CEEEEeCCC--CCCC-C-CHHHHHHHHHHHhhcCCC---CCChHHHHHHHHHHHHHhCcCCCCCCEEE
Confidence 35556676 788887642 2344 3 799999999887664331 1234567789999988655321 12577
Q ss_pred EeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCc
Q 003472 466 FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRG 545 (817)
Q Consensus 466 f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~ 545 (817)
++++..++...++... .. . ...|+...-+|..-... ....|..
T Consensus 759 vt~Gs~elL~lll~aL----l~-p----------------GD~VLVp~PtY~~Y~~~-a~~~Ga~--------------- 801 (1082)
T PLN02672 759 YGDTSLALFNKLVLCC----VQ-E----------------GGTLCFPAGSNGTYVSA-AKFLKAN--------------- 801 (1082)
T ss_pred EeCCHHHHHHHHHHHH----cC-C----------------CCEEEEeCCChHHHHHH-HHHcCCE---------------
Confidence 7776666666665544 11 1 13677777777653221 1111111
Q ss_pred cccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE
Q 003472 546 LFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII 625 (817)
Q Consensus 546 ~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIv 625 (817)
+..++.... ++ |.. | .+.+++.+.. ..+.+.+|+
T Consensus 802 -------------vv~Vpl~~e-------------~g----f~l--D--------~d~Le~al~~------~~~~~I~L~ 835 (1082)
T PLN02672 802 -------------FRRIPTKSS-------------DG----FKL--T--------AKTLASTLET------VKKPWVYIS 835 (1082)
T ss_pred -------------EEEEecccc-------------cC----CCC--C--------HHHHHHHhcc------CCCCEEEEE
Confidence 011111000 00 000 0 1446666542 122357788
Q ss_pred ccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc---hh----hhc-CCCC--cee---ecccccC
Q 003472 626 EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET---TA----DLL-GCVP--DIA---CYGKLLT 692 (817)
Q Consensus 626 EPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~---a~----e~~-gv~P--Div---tlgK~Lg 692 (817)
-|- +.=-|.+. +.+-+++|.++|++||+++|.||++.++--.|..+ .. ..+ ...+ .++ +|||.++
T Consensus 836 nPn-hNPTG~v~-S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~ 913 (1082)
T PLN02672 836 GPT-INPTGLLY-SNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELL 913 (1082)
T ss_pred CcC-CCCcCccC-CHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhc
Confidence 884 33446554 88999999999999999999999998663334321 11 111 1112 232 6798877
Q ss_pred C-CCCcceEEEech-HHHhhhc
Q 003472 693 G-GVIPLAATLATN-AVFDSFV 712 (817)
Q Consensus 693 g-Gy~PlsAvl~s~-~i~d~~~ 712 (817)
- | +-+|.+++.+ ++++.+.
T Consensus 914 lpG-LRIGylIap~~eLi~~l~ 934 (1082)
T PLN02672 914 SGG-HEFGFLALNDSVLIDAFH 934 (1082)
T ss_pred cHH-HHheeEEeCCHHHHHHHH
Confidence 4 7 7888899864 4788774
|
|
| >TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00047 Score=74.36 Aligned_cols=62 Identities=19% Similarity=0.071 Sum_probs=46.9
Q ss_pred CCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEcc
Q 003472 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFED 288 (817)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~ 288 (817)
+|+|||.+. |........-++... --||+|+..+.-++..+..+++.++..|.+++|+|+|+
T Consensus 213 yD~ViiD~p-----p~~~~~d~~~~~~~~-d~vilV~~~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 213 YDVVIVDTP-----SAEHSSDAQIVATRA-RGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred CCEEEEeCC-----CcccccHHHHHHHhC-CeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 999999994 322111223344433 36788999988899999999999999999999999996
|
The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF). |
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0026 Score=72.22 Aligned_cols=86 Identities=20% Similarity=0.215 Sum_probs=56.8
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHhh------cCCcEEEeeeeeccccccccchhhhcCCCCc-ee--ecccc
Q 003472 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQN------RKIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA--CYGKL 690 (817)
Q Consensus 620 iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~------~GilLI~DEV~TGfGRtG~~~a~e~~gv~PD-iv--tlgK~ 690 (817)
+.+|++-.. +.-.|... |.+-+++|.++|++ ||+++|.||+...|-..|.... ......+. ++ +++|.
T Consensus 169 ~~~v~~~~p-~NPtG~~~-~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~i~~~S~SK~ 245 (394)
T PRK06836 169 TKAVIINSP-NNPTGVVY-SEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVP-YIFKYYDNSIVVYSFSKS 245 (394)
T ss_pred ceEEEEeCC-CCCCCcCC-CHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCC-ChHHccCcEEEEecchhh
Confidence 445555443 45556655 77888999999999 8999999999976622221111 00111123 33 68999
Q ss_pred cC-CCCCcceEEEechHHHh
Q 003472 691 LT-GGVIPLAATLATNAVFD 709 (817)
Q Consensus 691 Lg-gGy~PlsAvl~s~~i~d 709 (817)
+| .| +-+|.+++++++.+
T Consensus 246 ~~~pG-lRiG~~~~~~~~~~ 264 (394)
T PRK06836 246 LSLPG-ERIGYIAVNPEMED 264 (394)
T ss_pred ccCcc-eeeEEEecCHHHhh
Confidence 98 68 78899999887643
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0007 Score=75.21 Aligned_cols=102 Identities=18% Similarity=0.303 Sum_probs=68.0
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~ 696 (817)
+.++.-| +.--|.+.+ .++|.++|+ +++++|+||+...|.. .... ......+.++ +|||.+| .| +
T Consensus 143 ~v~~~~P--~NPtG~~~~----~~~l~~i~~-~~~~ii~De~y~~~~~-~~~~--~~~~~~~~vi~l~S~SK~~~l~G-l 211 (337)
T PRK03967 143 AVFICSP--NNPTGNLQP----EEEILKVLE-TGKPVVLDEAYAEFSG-KSLI--GLIDEYPNLILLRTFSKAFGLAG-I 211 (337)
T ss_pred EEEEeCC--CCCCCCCCC----HHHHHHHHh-cCCEEEEECchhhhcc-cchH--HHHhhCCCEEEEecchHhhcchh-h
Confidence 3456667 455566665 467777884 7999999999987731 1111 1112234444 7899999 78 7
Q ss_pred cceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHH
Q 003472 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIK 741 (817)
Q Consensus 697 PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~ 741 (817)
=+|.+++++++++.+... ..+++.+.++.+++.++|+
T Consensus 212 RiG~iv~~~~~i~~~~~~--------~~~~~~~~~~q~~~~~~l~ 248 (337)
T PRK03967 212 RAGYAIANEEIIDALYRI--------KPPFSLNILTMKIVRLALD 248 (337)
T ss_pred hheeeecCHHHHHHHHhh--------cCCCCCCHHHHHHHHHHHh
Confidence 899999999998887532 1234557777777777664
|
|
| >COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00028 Score=76.04 Aligned_cols=87 Identities=17% Similarity=0.165 Sum_probs=67.0
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC----CCC---
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH----GLV--- 292 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~----~~~--- 292 (817)
.+|+|||+.. | ..+...+.+++.+..=+|+|+....-....+..+++++++-+.+|+|||.|.. ...
T Consensus 166 ~~D~vIID~P-----P-~~g~~d~~i~~~~~~g~viVt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~Nm~~~~~~~~~~g 239 (265)
T COG0489 166 EYDYVIIDTP-----P-GTGDADATVLQRIPDGVVIVTTPGKTALEDVKKAIDMLEKAGIPVLGVVENMSYFICPRCGEG 239 (265)
T ss_pred CCCEEEEeCC-----C-CchHHHHHHHhccCCeEEEEeCCccchHHHHHHHHHHHHhcCCceEEEEecCccCcccccCCC
Confidence 3999999983 2 24456788888887789999999999999999999999999999999999964 111
Q ss_pred CHHHHHHhhcCCCcEEe-cCCCCC
Q 003472 293 NEVPLMSYLRNRVPVLV-LPPLPQ 315 (817)
Q Consensus 293 ~~~~l~~~~~~~~pvlg-iP~~~~ 315 (817)
..+.+-+.+ + |++| +|..+.
T Consensus 240 ~~~~~~~~~--~-~~~g~~p~~~~ 260 (265)
T COG0489 240 GGEKYAERY--G-PYLGSIPLDPS 260 (265)
T ss_pred chhhHHHHh--c-cccccCCCChh
Confidence 344444444 5 8888 886544
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0013 Score=76.82 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=72.4
Q ss_pred cEE-EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccc-ccc-hh-hh-cCCCCc------ee--
Q 003472 619 CIG-ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-VET-TA-DL-LGCVPD------IA-- 685 (817)
Q Consensus 619 ~iA-AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG-~~~-a~-e~-~gv~PD------iv-- 685 (817)
++. .+++-| +.-.|.+. +.+-+++|.++|++||+++|.||+...+--.+ ..+ .. .. .++.++ ++
T Consensus 218 ~~k~l~l~~P--~NPTG~~~-s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~ 294 (481)
T PTZ00377 218 TPRALVVINP--GNPTGQVL-TRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSF 294 (481)
T ss_pred CeeEEEEECC--CCCCCcCC-CHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEE
Confidence 444 566666 44556655 78899999999999999999999996542112 111 11 10 122222 33
Q ss_pred -eccccc-C-CCCCcceEEEe---chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHH
Q 003472 686 -CYGKLL-T-GGVIPLAATLA---TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIK 741 (817)
Q Consensus 686 -tlgK~L-g-gGy~PlsAvl~---s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~ 741 (817)
+|||++ + .| +=+|.+++ .+++++.+... ...+++.++++.+++.++|+
T Consensus 295 ~S~SK~~~~~~G-lRiG~~~~~~~p~~li~~l~~~-------~~~~~~~~~~~Q~a~~~~l~ 348 (481)
T PTZ00377 295 HSTSKGIIGECG-RRGGYFELTNIPPEVREQIYKL-------ASINLCSNVVGQLMTGLMCN 348 (481)
T ss_pred ecCCcccccCCc-CceEEEEEeCCCHHHHHHHHHH-------hheecCCChHHHHHHHHHhC
Confidence 589986 4 47 67787876 78888877431 22334577788887777774
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00084 Score=76.29 Aligned_cols=56 Identities=11% Similarity=0.141 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeee
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV 662 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV 662 (817)
+.|++.|++ .+++++..+.++-. ...+|-.+.|.+++++++++|++||+.+.+|=.
T Consensus 170 ~~le~~I~~----~g~~~i~~v~~tlt-~N~~GGqpvslenlr~V~~la~~~GIplhLDgA 225 (467)
T TIGR02617 170 EGLERGIEE----VGPNNVPYIVATIT-CNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSA 225 (467)
T ss_pred HHHHHHHhh----cCCCCceeeeeeEE-EecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhH
Confidence 667778874 34467877777776 344444556899999999999999999999954
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0014 Score=74.16 Aligned_cols=153 Identities=9% Similarity=-0.003 Sum_probs=92.0
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcC---CcEEEeeeeeccccccccchhhhc
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK---IPVIFDEVFTGFWRLGVETTADLL 678 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~G---ilLI~DEV~TGfGRtG~~~a~e~~ 678 (817)
+.|++.+++ ...++..|++--. ..+-|.+.| +++|.++|++|| +.+.+|=+|.|+ ..-..-....+
T Consensus 148 ~~L~~~i~~-----~~~~t~lvv~t~g-tt~tG~idp----i~~I~~i~~~~g~~~~~lHVDaA~gg~-~~p~~~~~~~~ 216 (380)
T PRK02769 148 DDLISKIKE-----NKNQPPIIFANIG-TTMTGAIDN----IKEIQEILKKIGIDDYYIHADAALSGM-ILPFVNNPPPF 216 (380)
T ss_pred HHHHHHHHh-----CCCCcEEEEEEeC-CCCCcccCC----HHHHHHHHHHhCCCceEEEEEecccce-eecccCccccC
Confidence 567777764 1234555555554 677788888 999999999998 699999999763 22100000012
Q ss_pred CC--CCceeecc--cccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCC--HHHHHHHHHHHHHhcCcCchhcH
Q 003472 679 GC--VPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAH--ALGCAAAAKSIKWFKDPQTNHNI 752 (817)
Q Consensus 679 gv--~PDivtlg--K~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gn--Pla~AAAlA~L~~l~~~~l~~~l 752 (817)
++ ..|.++++ | ++++-.+.|+++++++..+.+...... ......|+.|. ..+.++.-++|+.+..+++ ++.
T Consensus 217 d~~~~vDsis~s~HK-~~~~P~g~G~l~~r~~~~~~~~~~~~y-l~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~-~~~ 293 (380)
T PRK02769 217 SFADGIDSIAISGHK-FIGSPMPCGIVLAKKKYVERISVDVDY-IGSRDQTISGSRNGHTALLLWAAIRSLGSKGL-RQR 293 (380)
T ss_pred CccCCCCEEEECCcc-cCCCCCCcEEEEEehhhhhhcccCccc-cCCCCCCccCCCCcHHHHHHHHHHHHHCHHHH-HHH
Confidence 21 46888764 5 444336889999999877665321110 00112244554 3566777788888866543 444
Q ss_pred HHHHHHHHHHHHHHHH
Q 003472 753 IPERRILRELWDLELI 768 (817)
Q Consensus 753 ~~~~~~lg~~l~~~l~ 768 (817)
.++...+.+++.+++.
T Consensus 294 ~~~~~~la~~l~~~L~ 309 (380)
T PRK02769 294 VQHCLDMAQYAVDRLQ 309 (380)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5556666666665543
|
|
| >PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00014 Score=73.50 Aligned_cols=68 Identities=22% Similarity=0.175 Sum_probs=47.2
Q ss_pred CCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCC--CcEEEEEEccCCCCCHH
Q 003472 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRG--YDVVAVVFEDHGLVNEV 295 (817)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~--~~v~gvi~n~~~~~~~~ 295 (817)
+|++||++.+++..+ ...+.. .---+|+|+....-.+..+...++.++..+ .++.++|+|++...+..
T Consensus 95 yD~iiiD~~~~~~~~------~~~~l~-~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~~~ 164 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP------VRNALA-AADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPGNES 164 (195)
T ss_dssp SSEEEEEECSSSSHH------HHHHHH-TSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCCHH
T ss_pred ccceeecccccccHH------HHHHHH-hCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCCccc
Confidence 999999998765544 111111 222266777777667888888888888766 56899999999655433
|
These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A .... |
| >PRK11670 antiporter inner membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00094 Score=75.32 Aligned_cols=90 Identities=11% Similarity=0.056 Sum_probs=62.8
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCC-EEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC------
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLP-GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV------ 292 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~p-vilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~------ 292 (817)
.+|++||-..-|+ +...+.++..+.+. +|+|.....-++..+..+++.+...++++.|+|+|+....
T Consensus 215 ~yDyvIID~PPg~------gd~~l~~~~l~aad~viiV~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~~~~~~~~~ 288 (369)
T PRK11670 215 DLDYLVLDMPPGT------GDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGH 288 (369)
T ss_pred cCCEEEEeCCCCC------chHHHHHhhhccCCeEEEEecCchhHHHHHHHHHHHHhccCCCeEEEEEcCCccccCCccc
Confidence 4999999995543 22233444443333 6788887777788888888888888899999999986211
Q ss_pred --------CHHHHHHhhcCCCcEEe-cCCCCCCC
Q 003472 293 --------NEVPLMSYLRNRVPVLV-LPPLPQDS 317 (817)
Q Consensus 293 --------~~~~l~~~~~~~~pvlg-iP~~~~~~ 317 (817)
..+.+.+.+ ++|+++ ||......
T Consensus 289 ~~~if~~~~~~~lae~~--~~~ll~~IP~~~~I~ 320 (369)
T PRK11670 289 HEPIFGTGGAEKLAEKY--HTQLLGQMPLHISLR 320 (369)
T ss_pred hhhhcccchHHHHHHHc--CCcEEEEeCCChHHH
Confidence 134455555 899999 99876643
|
|
| >TIGR02016 BchX chlorophyllide reductase iron protein subunit X | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00029 Score=77.10 Aligned_cols=92 Identities=15% Similarity=0.178 Sum_probs=58.0
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCCh---HHHHHHHHHHHHhCC--CcEEEEEEccCCC-CC
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGG---ISGTISAYESLKLRG--YDVVAVVFEDHGL-VN 293 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~---i~~~~~~~~~l~~~~--~~v~gvi~n~~~~-~~ 293 (817)
++|++||-..|++.++... ..+ +...---||+|+....-+ .+.+..+++.++..+ .++.|+|+|+... ..
T Consensus 122 ~yD~IliD~~~~~~~~g~~-~~~---a~~~Ad~viVvt~~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~~~ 197 (296)
T TIGR02016 122 DFDFVLMDFLGDVVCGGFA-TPL---ARSLAEEVIVIGSNDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGSGE 197 (296)
T ss_pred cCCEEEEecCCCccccccc-cch---hhhhCCeEEEEecchHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCccH
Confidence 4999999986654332110 111 111112457777766444 466677777777654 6799999999843 33
Q ss_pred HHHHHHhhcCCCcEEe-cCCCCCCC
Q 003472 294 EVPLMSYLRNRVPVLV-LPPLPQDS 317 (817)
Q Consensus 294 ~~~l~~~~~~~~pvlg-iP~~~~~~ 317 (817)
.+.+.+.. ++|+++ ||+.+...
T Consensus 198 ~~~~~~~~--~i~vLg~IP~d~~i~ 220 (296)
T TIGR02016 198 AQAFAREV--GIPVLAAIPADEELR 220 (296)
T ss_pred HHHHHHHc--CCCeEEECCCCHHHH
Confidence 34444555 999999 99987765
|
This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein. |
| >TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00044 Score=71.56 Aligned_cols=72 Identities=19% Similarity=0.138 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhccCcccccccccCCC--CEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHH
Q 003472 195 SKVIETLGKCLRDGLESESESERGKME--ILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (817)
Q Consensus 195 ~~i~~~~~~~~~~~~~~~~~~~~~~~~--d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (817)
+.+.+.+..+.++ + |+|||.+..+... .....++...+ -||+|+..+.-++..+..+++
T Consensus 134 ~~l~~~l~~l~~~-------------y~~D~IiiD~pp~~~~-----~~~~~l~~~aD-~viiV~~~~~~~~~~~~~~~~ 194 (207)
T TIGR03018 134 QRMRSLLHELARR-------------YPDRIIIIDTPPLLVF-----SEARALARLVG-QIVLVVEEGRTTQEAVKEALS 194 (207)
T ss_pred HHHHHHHHHHHhh-------------CCCCEEEEECCCCcch-----hHHHHHHHhCC-EEEEEEECCCCCHHHHHHHHH
Confidence 4556666665544 5 9999999553322 22334444444 577888888888999999999
Q ss_pred HHHhCCCcEEEEEEc
Q 003472 273 SLKLRGYDVVAVVFE 287 (817)
Q Consensus 273 ~l~~~~~~v~gvi~n 287 (817)
.++ +.++.|+|+|
T Consensus 195 ~l~--~~~~~G~v~N 207 (207)
T TIGR03018 195 ALE--SCKVLGVVLN 207 (207)
T ss_pred Hhc--CCCeEEEEeC
Confidence 998 6799999998
|
Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0015 Score=75.50 Aligned_cols=79 Identities=18% Similarity=0.118 Sum_probs=48.8
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEE--eeeeeccccccccchhhhcCCCCceeec-----cccc
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIF--DEVFTGFWRLGVETTADLLGCVPDIACY-----GKLL 691 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~--DEV~TGfGRtG~~~a~e~~gv~PDivtl-----gK~L 691 (817)
++++|++... ...|.+.+ +++|.++|+++|+++|+ |.+..|+ ... .. ....|+++. ||..
T Consensus 204 ~t~~v~l~~p--n~tG~v~~----l~~I~~~a~~~~~~~iv~~d~~~~g~--~~~---~~--~~~~D~~~~s~~k~~~~~ 270 (447)
T PRK00451 204 DTAAVVVQYP--NFFGVIED----LEEIAEIAHAGGALFIVGVDPVSLGL--LKP---PG--EYGADIVVGEGQPLGIPL 270 (447)
T ss_pred CeEEEEEECC--CCCCeeCC----HHHHHHHHHHCCCEEEEEcChHHhcc--CCC---cc--cCCCCEEEECCCcCCCCC
Confidence 4667777653 34577765 99999999999999998 6553222 211 11 235688754 4442
Q ss_pred C-CCCCcceEEEechHHHhhh
Q 003472 692 T-GGVIPLAATLATNAVFDSF 711 (817)
Q Consensus 692 g-gGy~PlsAvl~s~~i~d~~ 711 (817)
. +| .-+|.+.+++++.+.+
T Consensus 271 ~~~G-pg~G~l~~~~~~~~~~ 290 (447)
T PRK00451 271 SFGG-PYLGFFATRKKLVRQM 290 (447)
T ss_pred CCCC-CCchHHHhhHHHHhhC
Confidence 2 23 1255567788887764
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0024 Score=72.64 Aligned_cols=84 Identities=14% Similarity=0.198 Sum_probs=56.7
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-ch-hhhcCCCCc---eeecccccC-CC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TT-ADLLGCVPD---IACYGKLLT-GG 694 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a-~e~~gv~PD---ivtlgK~Lg-gG 694 (817)
+.+|+-| +.--|.+. +.+-+++|.++|++||+++|.||++..|-..+.. .. .+.-+.... +-+|||.+| .|
T Consensus 176 ~i~l~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pG 252 (402)
T TIGR03542 176 IIYLCSP--NNPTGTVL-TKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTG 252 (402)
T ss_pred EEEEeCC--CCCCCccC-CHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCC
Confidence 3444455 45556655 7888999999999999999999999766322211 11 111111111 238899997 68
Q ss_pred CCcceEEEechHHH
Q 003472 695 VIPLAATLATNAVF 708 (817)
Q Consensus 695 y~PlsAvl~s~~i~ 708 (817)
+-+|.++++++++
T Consensus 253 -lRiG~~i~~~~l~ 265 (402)
T TIGR03542 253 -VRLGWTVVPKELT 265 (402)
T ss_pred -cceEEEEecHHHh
Confidence 8999999998876
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.001 Score=75.90 Aligned_cols=128 Identities=15% Similarity=0.166 Sum_probs=73.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc---cchhhhc
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL 678 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~---~~a~e~~ 678 (817)
+.+++.+++ ..+.+..-++.-| +.=.|.+. +++-+++|.++|++||+++|.||+...|-.-+. .-....+
T Consensus 164 ~~l~~~~~~----~~~~~~~~~~~~p--~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~ 236 (404)
T PTZ00376 164 DGMLEDLRT----APNGSVVLLHACA--HNPTGVDP-TEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLF 236 (404)
T ss_pred HHHHHHHHh----CCCCCEEEEeCCC--CCCCCCCC-CHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHH
Confidence 445556643 1122333333445 45556665 889999999999999999999999977732221 1011111
Q ss_pred -CCCCcee---ecccccC-CCCCcceEE---EechHHHhhhcCCCccceeecccCCCC-CHHHHHHHHHHH
Q 003472 679 -GCVPDIA---CYGKLLT-GGVIPLAAT---LATNAVFDSFVGDSKLKALLHGHSYSA-HALGCAAAAKSI 740 (817)
Q Consensus 679 -gv~PDiv---tlgK~Lg-gGy~PlsAv---l~s~~i~d~~~~~~~~~~~~h~~T~~g-nPla~AAAlA~L 740 (817)
...+.++ +|||.++ .| +=+|.+ ++++++.+.+...- ...+.+++.. ++++..++.++|
T Consensus 237 ~~~~~~vi~i~SfSK~~~~~G-lRvG~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~q~~~~~~l 303 (404)
T PTZ00376 237 AERGVEFLVAQSFSKNMGLYG-ERIGALHIVCANKEEAANVLSQL---KLIIRPMYSSPPIHGARIADRIL 303 (404)
T ss_pred HhcCCcEEEEEeCCCcccccc-cccceEEEEeCCHHHHHHHHHHH---HHHHhhhcCCCchHHHHHHHHHh
Confidence 1112333 7899999 78 788887 56776555432110 0012234443 556666665555
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0078 Score=68.71 Aligned_cols=85 Identities=12% Similarity=0.120 Sum_probs=57.7
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-chhhhcCCCCc-ee---ecccccC-CCC
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD-IA---CYGKLLT-GGV 695 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a~e~~gv~PD-iv---tlgK~Lg-gGy 695 (817)
.+++-| +.=.|.+. +.+-+++|.++|++||+++|.||+...|-..+.. -....+.-.+| ++ +|||.+| .|
T Consensus 180 i~l~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pG- 255 (409)
T PRK07590 180 IYLCFP--NNPTGTVL-TKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTG- 255 (409)
T ss_pred EEEeCC--CCCcCCcC-CHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCcC-
Confidence 344566 34446655 7888999999999999999999999766222221 11111111123 22 7999997 78
Q ss_pred CcceEEEechHHHhh
Q 003472 696 IPLAATLATNAVFDS 710 (817)
Q Consensus 696 ~PlsAvl~s~~i~d~ 710 (817)
+=+|.+++.+++++.
T Consensus 256 lRiG~~i~~~~li~~ 270 (409)
T PRK07590 256 TRCAYTVVPKELKGK 270 (409)
T ss_pred ceeEEEEcCHHHhhh
Confidence 789999999998873
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0022 Score=72.80 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=48.7
Q ss_pred ccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccc-cc-cchh-hhcCCCCcee---ecccccCC-CCCcceEEE
Q 003472 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL-GV-ETTA-DLLGCVPDIA---CYGKLLTG-GVIPLAATL 702 (817)
Q Consensus 630 qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRt-G~-~~a~-e~~gv~PDiv---tlgK~Lgg-Gy~PlsAvl 702 (817)
+.=-|.+. +.+.+++|.++|++||+++|.||+...|.-. +. .... ...+..+.++ +|||.++- | +=+|.++
T Consensus 182 ~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~G-lRiG~~~ 259 (396)
T PRK09257 182 HNPTGADL-TPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYG-ERVGALS 259 (396)
T ss_pred CCCCCCCC-CHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCcccc-ccceeEE
Confidence 44456655 8999999999999999999999999877421 11 1111 1111223343 78999995 7 6788776
|
|
| >TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0032 Score=69.65 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=67.9
Q ss_pred CChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHH
Q 003472 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (817)
Q Consensus 192 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~ 271 (817)
+..+.+.+.++.+.+. +|+|||-..+++. .....+....+. +|+|+....-++..+...+
T Consensus 189 ~~~~~l~~~l~~l~~~-------------~D~VIID~p~~~~------~~~~~~L~~AD~-vliV~~~~~~sl~~a~r~l 248 (322)
T TIGR03815 189 LPPAAVRAVLDAARRG-------------GDLVVVDLPRRLT------PAAETALESADL-VLVVVPADVRAVAAAARVC 248 (322)
T ss_pred CCHHHHHHHHHHHHhc-------------CCEEEEeCCCCCC------HHHHHHHHHCCE-EEEEcCCcHHHHHHHHHHH
Confidence 3445566666555443 9999999976531 123344444443 7788888877777777777
Q ss_pred HHHHhCCCcEEEEEEccCC--CCCHHHHHHhhcCCCcEEe-cCCCCCC
Q 003472 272 ESLKLRGYDVVAVVFEDHG--LVNEVPLMSYLRNRVPVLV-LPPLPQD 316 (817)
Q Consensus 272 ~~l~~~~~~v~gvi~n~~~--~~~~~~l~~~~~~~~pvlg-iP~~~~~ 316 (817)
+.++..+.++ .+|+|+.. ....+.+++.+ +.|+++ ||+.+..
T Consensus 249 ~~l~~~~~~~-~lVv~~~~~~~~~~~~i~~~l--g~~v~~~Ip~d~~v 293 (322)
T TIGR03815 249 PELGRRNPDL-RLVVRGPAPAGLDPEEIAESL--GLPLLGEVRDQRGL 293 (322)
T ss_pred HHHhhhCCCe-EEEEeCCCCCCCCHHHHHHHh--CCCceeeCCCChhH
Confidence 7777665543 56778752 33567788888 899999 9887653
|
Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria. |
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00051 Score=76.78 Aligned_cols=165 Identities=16% Similarity=0.207 Sum_probs=90.1
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCCc
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIP 697 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~P 697 (817)
.+|.-| +.--|.+. +.+.+++|.+.|+ ++++|+||++.-|.. .. ...+.....|.++ +|+|.+| .| +=
T Consensus 151 i~i~nP--~NPTG~~~-~~~~l~~l~~~~~--~~~vivDeay~~~~~-~~-s~~~~~~~~~~~iv~~S~SK~~~l~G-lR 222 (354)
T PRK04635 151 VFICNP--NNPTGTVI-DRADIEQLIEMTP--DAIVVVDEAYIEFCP-EY-SVADLLASYPNLVVLRTLSKAFALAG-AR 222 (354)
T ss_pred EEEeCC--CCCCCccC-CHHHHHHHHHhCC--CcEEEEeCchHhhcc-Cc-chHHHHhhCCCEEEEechHHHhhhhH-HH
Confidence 345555 55567766 4555666666655 499999999976631 11 1111112224443 8999987 56 56
Q ss_pred ceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 003472 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (817)
Q Consensus 698 lsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V 777 (817)
+|.+++++++.+.+... ...|+.+....++|.++|+ +.+ .+.+.+..+.+.+ .++.+.+.+++++.+
T Consensus 223 lG~~i~~~~~~~~l~~~--------~~~~~~~~~~~~~a~~~l~---~~~-~~~~~~~~~~~~~-~r~~l~~~L~~~~~~ 289 (354)
T PRK04635 223 CGFTLANEELIEILMRV--------IAPYPVPLPVSEIATQALS---EAG-LARMKFQVLDLNA-QGARLQAALSMYGGA 289 (354)
T ss_pred HhhhhCCHHHHHHHHhh--------cCCCCCCHHHHHHHHHHHh---ccc-HHHHHHHHHHHHH-HHHHHHHHHHhCCCc
Confidence 77789999998877421 1234445555555555553 321 1223333333322 123344555555532
Q ss_pred ceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 778 QRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 778 ~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.-....|.++-+++.+ ...+.+.+.++||.
T Consensus 290 ~~~~~~g~f~~~~~~~---------~~~~~~~l~~~gv~ 319 (354)
T PRK04635 290 KVLEGNGNYVLAKFDD---------VDAVFKALWDAGIV 319 (354)
T ss_pred eECCCCCcEEEEECCC---------HHHHHHHHHHCCEE
Confidence 2223346666666542 23466677788873
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.005 Score=70.46 Aligned_cols=157 Identities=14% Similarity=0.057 Sum_probs=90.4
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc--cch-hhhc-CCC------Ccee---ec
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETT-ADLL-GCV------PDIA---CY 687 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~--~~a-~e~~-gv~------PDiv---tl 687 (817)
+.+++-| +.=-|.+. +.+-+++|.++|++||+++|.||+...+--.|. ... .+.. ++. +.++ +|
T Consensus 213 ~l~l~nP--~NPTG~v~-s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~Sf 289 (407)
T PLN02368 213 AMVIINP--GNPTGQCL-SEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTV 289 (407)
T ss_pred EEEEECC--CCCCCccC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecC
Confidence 3567778 34456655 799999999999999999999999976622231 211 1111 121 2344 67
Q ss_pred ccccC--CCCCcceEEE---echHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhc--CcC---chhcHHHHHH
Q 003472 688 GKLLT--GGVIPLAATL---ATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK--DPQ---TNHNIIPERR 757 (817)
Q Consensus 688 gK~Lg--gGy~PlsAvl---~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~--~~~---l~~~l~~~~~ 757 (817)
||++. -| +=+|.++ +.+++++.+..- ...+++.+.++-.++.++|+--+ ++. +.+.+.+...
T Consensus 290 SK~~~~~~G-lRiGy~i~~~~~~~li~~~~~~-------~~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~ 361 (407)
T PLN02368 290 SKGYWGECG-QRGGYFEMTNIPPKTVEEIYKV-------ASIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILE 361 (407)
T ss_pred CcccccCCc-cceEEEEEeCCCHHHHHHHHHH-------hcccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHH
Confidence 99984 57 6788887 477888877431 22356667778777777763211 000 1111112222
Q ss_pred HHHHHHHHHHHHHHHcCCCcceEEeeeeEEEE
Q 003472 758 ILRELWDLELIQQISSHRTVQRVVALGTLCAI 789 (817)
Q Consensus 758 ~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gI 789 (817)
.+.++ ++.+.+.+++.|.+..+.-.|.|..+
T Consensus 362 ~~~~r-r~~~~~~L~~~~g~~~~~P~Gafy~~ 392 (407)
T PLN02368 362 SLRRR-ARMMTDGFNSCKNVVCNFTEGAMYSF 392 (407)
T ss_pred HHHHH-HHHHHHHHhCCCCeEeCCCCeeeEec
Confidence 22222 12244555666655555566666553
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0051 Score=69.11 Aligned_cols=234 Identities=15% Similarity=0.110 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCC
Q 003472 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (817)
Q Consensus 419 P~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~ 498 (817)
.+..+++.+.++...... -+...++++.+++++|. .++..++||+.|.+.|++.. - -|
T Consensus 15 ~~e~~~v~~vl~sg~i~~-----G~~v~~FE~~~ae~~G~---k~ava~~sgT~AL~laL~al-~-----ig-------- 72 (374)
T COG0399 15 EEELAAVQEVLKSGWLTG-----GPFVRRFEQAFAEYLGV---KYAVAVSSGTAALHLALLAL-A-----IG-------- 72 (374)
T ss_pred hHHHHHHHHHHHcCCeec-----ChHHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHhc-C-----CC--------
Confidence 345556666666543322 46778999999999984 68999999999999999976 1 11
Q ss_pred CccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccc
Q 003472 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578 (817)
Q Consensus 499 ~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~ 578 (817)
....||.-.-+|=.+. .++...|. .|++ .|- .|+.
T Consensus 73 ------~GDeVI~ps~TfvATa-n~i~~~Ga--------~PVF------vDi-------------d~~T----------- 107 (374)
T COG0399 73 ------PGDEVIVPSFTFVATA-NAVLLVGA--------KPVF------VDI-------------DPDT----------- 107 (374)
T ss_pred ------CCCEEEecCCchHHHH-HHHHHcCC--------eEEE------Eec-------------CCcc-----------
Confidence 1125666555554321 22222221 1111 110 0111
Q ss_pred cccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEE
Q 003472 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658 (817)
Q Consensus 579 ~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI 658 (817)
|| +| .+.||+.|.. ++.|||.==+ .|.... ++.++++|++||+++|
T Consensus 108 -~n-id----------------~~~ie~aIt~--------~tKAIipVhl----~G~~~d----m~~i~~la~~~~l~vI 153 (374)
T COG0399 108 -LN-ID----------------PDLIEAAITP--------RTKAIIPVHL----AGQPCD----MDAIMALAKRHGLPVI 153 (374)
T ss_pred -cC-CC----------------HHHHHHHccc--------CCeEEEEehh----ccCCCC----HHHHHHHHHHcCCeEE
Confidence 11 11 2667777752 2555553222 244444 8999999999999999
Q ss_pred EeeeeeccccccccchhhhcCCCCceeec----ccccCCCCCcceEEEec-hHHHhhhc---CCCc-------cceeecc
Q 003472 659 FDEVFTGFWRLGVETTADLLGCVPDIACY----GKLLTGGVIPLAATLAT-NAVFDSFV---GDSK-------LKALLHG 723 (817)
Q Consensus 659 ~DEV~TGfGRtG~~~a~e~~gv~PDivtl----gK~LggGy~PlsAvl~s-~~i~d~~~---~~~~-------~~~~~h~ 723 (817)
-|=.| ++|-+=+. ..-|---|+.+| .|-||-| =-|+++++ +++++... .... ......|
T Consensus 154 EDaAq-a~Ga~y~g---k~vGt~Gd~~~fSF~~~K~ittg--EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G 227 (374)
T COG0399 154 EDAAQ-AHGATYKG---KKVGSFGDIGAFSFHATKNLTTG--EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELG 227 (374)
T ss_pred EEcch-hccCeecC---cccccccceEEEEecCCCCcccc--CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecc
Confidence 99999 45443221 112222244443 2555532 11245544 45555432 2211 1122346
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHH
Q 003472 724 HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDL 765 (817)
Q Consensus 724 ~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~ 765 (817)
+.|--+-+.+|.+++-|+.+++ +.++-+.+.+.+.+
T Consensus 228 ~N~rm~~iqAAigl~QL~~l~~------~~~~R~~~a~~Y~~ 263 (374)
T COG0399 228 YNYRLTEIQAAIGLAQLERLDE------INERRREIAQIYAE 263 (374)
T ss_pred cccCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 6777789999999999999854 34444444444433
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.017 Score=66.04 Aligned_cols=292 Identities=11% Similarity=0.087 Sum_probs=165.1
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCC-CCC-----CChHHHHHHHHHHhhcCCCCcceEEEeCChHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF-PEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~-~~~-----~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA 473 (817)
-|+|..+ .+.. +..|.+|+.+...++.-... ... .+....+.-+.++++++....+.+.|+.+-++|
T Consensus 24 vylD~aa------~~~~-p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~a 96 (405)
T COG0520 24 VYLDNAA------TSQK-PQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEA 96 (405)
T ss_pred EEecCcc------cccC-CHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHH
Confidence 5777544 3456 88999999988765432211 111 123344555566666664323579999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcc
Q 003472 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (817)
Q Consensus 474 ~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (817)
.........+.. + ++ ..||..+.-+|....--..+... .|.-
T Consensus 97 ln~va~~l~~~~--~---------------~g-deIv~s~~EH~sn~~pw~~~~~~--------------~Ga~------ 138 (405)
T COG0520 97 LNLVARGLGRSL--K---------------PG-DEIVVSDLEHHSNIVPWQELAKR--------------TGAK------ 138 (405)
T ss_pred HHHHHHHhhhhh--c---------------CC-CEEEEccCcchhhHHHHHHHHHh--------------cCcE------
Confidence 877766551111 1 12 57888888888754332222210 0100
Q ss_pred cccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 003472 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (817)
Q Consensus 554 ~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~g 633 (817)
+..++..+. .. + ..+.++..+ .++...|.+--+ +..-
T Consensus 139 -----v~~i~~~~~-------------g~----~------------~~~~~~~~i--------~~~Tklvais~v-Sn~t 175 (405)
T COG0520 139 -----VRVIPLDDD-------------GL----L------------DLDALEKLI--------TPKTKLVALSHV-SNVT 175 (405)
T ss_pred -----EEEEecCCC-------------CC----c------------CHHHHHHhc--------CCCceEEEEECc-cccc
Confidence 011111000 00 0 013444433 345667888887 7778
Q ss_pred CcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCCCCCcceEEEechHHHhhh
Q 003472 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF 711 (817)
Q Consensus 634 G~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~LggGy~PlsAvl~s~~i~d~~ 711 (817)
|.+.| +++|.++|+++|+++++|=+|+ .|- . -.+-..+..|+++++ |.|.|= .-+|++.+++++.+.+
T Consensus 176 G~~~p----v~~I~~la~~~ga~v~VDaaq~-~~h-~---~idv~~l~~Df~afsgHKwl~gP-~GiGvLy~r~~~l~~l 245 (405)
T COG0520 176 GTVNP----VKEIAELAHEHGALVLVDAAQA-AGH-L---PIDVQELGCDFLAFSGHKWLLGP-TGIGVLYVRKELLEEL 245 (405)
T ss_pred cccch----HHHHHHHHHHcCCEEEEECccc-cCc-c---CCCchhcCCCEEEEcccccccCC-CceEEEEEchHHHhhc
Confidence 99988 9999999999999999999994 311 1 112223468998775 767764 4478999999999876
Q ss_pred cC---CCcc--ceee-cccCCC--------C--CHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 712 VG---DSKL--KALL-HGHSYS--------A--HALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 712 ~~---~~~~--~~~~-h~~T~~--------g--nPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
.. +... .... ...|+. | |..+.....++++++++-+ .+++.+....+.+ .+.+.+++.|
T Consensus 246 ~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig-~~~i~~~e~~L~~----~~~~~L~~~~ 320 (405)
T COG0520 246 EPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIG-MEAIEAHERELTE----YLLEGLSELP 320 (405)
T ss_pred CCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHh-HHHHHHHHHHHHH----HHHHHHhcCC
Confidence 32 1000 0000 112221 2 3444444567888887643 3455555555555 4455566666
Q ss_pred Ccce---E-EeeeeEEEEEEecC
Q 003472 776 TVQR---V-VALGTLCAIELQAA 794 (817)
Q Consensus 776 ~V~~---V-rG~Glm~gIel~~~ 794 (817)
.+.- - ..++.++.+.+..-
T Consensus 321 ~v~i~g~~~~~r~~~vsF~v~~~ 343 (405)
T COG0520 321 GVEIYGPPDADRGGIVSFNVKGI 343 (405)
T ss_pred CeEEecCCcccCceEEEEEeCCC
Confidence 4321 1 23667777777553
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0047 Score=71.05 Aligned_cols=49 Identities=27% Similarity=0.268 Sum_probs=36.3
Q ss_pred ccCCCCCCCcCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 24 STFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
....+.++.++.....++++|. +|+||||+++.|++.|. ++|++|...-
T Consensus 82 l~~~~~~~~~~~~p~vI~lvG~-~GsGKTTtaakLA~~L~-----~~g~kV~lV~ 130 (437)
T PRK00771 82 LGEETEPLVLPLKPQTIMLVGL-QGSGKTTTAAKLARYFK-----KKGLKVGLVA 130 (437)
T ss_pred hCCCccccccCCCCeEEEEECC-CCCcHHHHHHHHHHHHH-----HcCCeEEEec
Confidence 3333344444445568889997 99999999999999994 6788888764
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0016 Score=67.84 Aligned_cols=94 Identities=23% Similarity=0.185 Sum_probs=61.1
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCCCHHHHHH
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMS 299 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~~~~~l~~ 299 (817)
.+|+|||.+--|+--=...-.-.+|+ +|.|++...-++--+--..++...-|++=+++|+|++.+. ...+..
T Consensus 133 ~~e~VivDtEAGiEHfgRg~~~~vD~-------vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~-e~~~~~ 204 (255)
T COG3640 133 RYEVVIVDTEAGIEHFGRGTIEGVDL-------VIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE-EELLRE 204 (255)
T ss_pred cCcEEEEecccchhhhccccccCCCE-------EEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch-hHHHHh
Confidence 48999999854432111011112222 6788888776666666666666677888899999999665 333343
Q ss_pred hhcC-CCcEEe-cCCCCCCCcchh
Q 003472 300 YLRN-RVPVLV-LPPLPQDSSNDL 321 (817)
Q Consensus 300 ~~~~-~~pvlg-iP~~~~~~~~~~ 321 (817)
.... +.+|+| ||+.+.+..-++
T Consensus 205 ~~~~~~~~vlg~iP~d~~v~~~dl 228 (255)
T COG3640 205 LAEELGLEVLGVIPYDPEVVEADL 228 (255)
T ss_pred hhhccCCeEEEEccCCHHHHhccc
Confidence 3333 899999 999988765443
|
|
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0024 Score=64.16 Aligned_cols=85 Identities=20% Similarity=0.259 Sum_probs=59.9
Q ss_pred CCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC--CHHH
Q 003472 219 KMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV--NEVP 296 (817)
Q Consensus 219 ~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~--~~~~ 296 (817)
+.+|++||.+.+|+.. .........+ -+|+|+.....++..+...++.++..+.++ ++|+|++... ..+.
T Consensus 91 ~~~d~viiDtpp~~~~------~~~~~l~~aD-~vliv~~~~~~~~~~~~~~~~~l~~~~~~~-~vV~N~~~~~~~~~~~ 162 (179)
T cd03110 91 EGAELIIIDGPPGIGC------PVIASLTGAD-AALLVTEPTPSGLHDLERAVELVRHFGIPV-GVVINKYDLNDEIAEE 162 (179)
T ss_pred cCCCEEEEECcCCCcH------HHHHHHHcCC-EEEEEecCCcccHHHHHHHHHHHHHcCCCE-EEEEeCCCCCcchHHH
Confidence 3599999999887532 1222222222 367888888888999888999998877774 8999998432 2344
Q ss_pred HHHhhcC-CCcEEe-cC
Q 003472 297 LMSYLRN-RVPVLV-LP 311 (817)
Q Consensus 297 l~~~~~~-~~pvlg-iP 311 (817)
++++++. ++|++| ||
T Consensus 163 ~~~~~~~~~~~vl~~ip 179 (179)
T cd03110 163 IEDYCEEEGIPILGKIP 179 (179)
T ss_pred HHHHHHHcCCCeEEeCC
Confidence 5555554 999999 87
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.003 Score=72.46 Aligned_cols=83 Identities=14% Similarity=0.145 Sum_probs=49.4
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchh---hHhhhC-CCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC----
Q 003472 220 MEILCIVETAGGVASPGPSGSLQC---DLYRPF-RLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL---- 291 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~---~la~~l-~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~---- 291 (817)
.+|+|||.+||-... ++.... .+.+.. ...++||++...| ..++...+.+.. .+.+.|+|+|+...
T Consensus 183 ~~DvVIIDTaGrl~~---d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~~~rg 256 (433)
T PRK10867 183 GYDVVIVDTAGRLHI---DEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDGDARG 256 (433)
T ss_pred CCCEEEEeCCCCccc---CHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccCcccc
Confidence 489999999995432 111222 222222 2357999997543 344444444443 47789999999842
Q ss_pred CCHHHHHHhhcCCCcEEec
Q 003472 292 VNEVPLMSYLRNRVPVLVL 310 (817)
Q Consensus 292 ~~~~~l~~~~~~~~pvlgi 310 (817)
...-.+...+ ++|+..+
T Consensus 257 G~alsi~~~~--~~PI~fi 273 (433)
T PRK10867 257 GAALSIRAVT--GKPIKFI 273 (433)
T ss_pred cHHHHHHHHH--CcCEEEE
Confidence 2344455666 8998663
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0082 Score=68.57 Aligned_cols=176 Identities=14% Similarity=0.069 Sum_probs=96.2
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCce---eecccccCCCCCc
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDI---ACYGKLLTGGVIP 697 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDi---vtlgK~LggGy~P 697 (817)
+.++.-| +.=-|.+. +.+-+++|.++|++|++++|.||+..-+ .....+..-.-...+.+ -+|||....| +-
T Consensus 182 ~i~l~~P--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~Y~~~-~~~~~~~~~~~~~~~~vI~~~SfSK~~~pG-lR 256 (416)
T PRK09440 182 AICVSRP--TNPTGNVL-TDEELEKLDALARQHNIPLLIDNAYGPP-FPGIIFSEATPLWNPNIILCMSLSKLGLPG-VR 256 (416)
T ss_pred EEEEecC--CCCCCccC-CHHHHHHHHHHHHHcCCcEEEeCCcccc-CCCcchhhcCccccCCeEEEecccccCCCc-ce
Confidence 4555566 45557766 7889999999999999999999998311 11100000000012233 3889975568 78
Q ss_pred ceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHH-HHHHHHHHHHHHHHHHHcC-C
Q 003472 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE-RRILRELWDLELIQQISSH-R 775 (817)
Q Consensus 698 lsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~-~~~lg~~l~~~l~~~l~~~-p 775 (817)
+|.+++++++++.+... ......+.+.++..++.+.| ++.++...+.+. .....+.. +.+.+.+.++ +
T Consensus 257 iG~~i~~~~l~~~~~~~------~~~~~~~~s~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~r~-~~~~~~L~~~l~ 326 (416)
T PRK09440 257 CGIVIADEEIIEALSNM------NGIISLAPGRLGPAIAAEMI---ESGDLLRLSETVIRPFYRQKV-QLAIALLRRYLP 326 (416)
T ss_pred EEEEeCCHHHHHHHHHH------HHHhccCCCcHHHHHHHHHh---ccchHHHHHHHHHHHHHHHHH-HHHHHHHHHhcc
Confidence 99999999998887431 11123445667666665555 333332222221 11111111 1223333322 2
Q ss_pred C--cceEEee-eeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 776 T--VQRVVAL-GTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 776 ~--V~~VrG~-Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
. +.-++.. |.++-+++.+.. .....+...+.++||.
T Consensus 327 ~~~~~~~~p~gg~fiw~~~~~~~-----~~~~~~~~~l~~~gV~ 365 (416)
T PRK09440 327 DEPCLIHKPEGAIFLWLWFKDLP-----ITTEELYQRLKARGVL 365 (416)
T ss_pred cCCeEEecCCCceEEEEECCCCC-----CCHHHHHHHHHHCCEE
Confidence 1 2112343 677777775421 1234566777788863
|
|
| >cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA) | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00088 Score=71.71 Aligned_cols=64 Identities=27% Similarity=0.129 Sum_probs=48.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCCC---HHH-----------HHHhhcC--CCcEEecCCCCC
Q 003472 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVN---EVP-----------LMSYLRN--RVPVLVLPPLPQ 315 (817)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~~---~~~-----------l~~~~~~--~~pvlgiP~~~~ 315 (817)
-+++|+....-++..+..+++.++..|+++.|+|+|++.... ..+ |++.-.. +.|++.+|+.+.
T Consensus 162 ~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~i~~vp~~~~ 241 (254)
T cd00550 162 SFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEELFSDLPVAKLPLLPE 241 (254)
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCcccccCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEeecCCC
Confidence 489999999999999999999999999999999999983221 111 1111111 688888998765
|
This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity. |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0055 Score=69.25 Aligned_cols=234 Identities=7% Similarity=-0.048 Sum_probs=126.8
Q ss_pred ChHHHHHHHHHHhhcCCCCcce--EEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 442 YEPALECAELLLQGVGKGWASR--AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~~~~--v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
.+...+.-+.++++++.+ -+. .+|+++|+|||..|+..| |.+.. ..+|.....-|-+
T Consensus 65 ~~~e~~v~~~ia~llg~~-~~~~~G~fTsGGTEaNl~al~~a-r~~~~-------------------~~~vi~s~~~H~S 123 (374)
T PLN03032 65 RQFEVGVLDWFARLWELE-KDEYWGYITTCGTEGNLHGILVG-REVFP-------------------DGILYASRESHYS 123 (374)
T ss_pred HHHHHHHHHHHHHHhCCC-CccCCEEEeCchHHHHHHHHHHH-HHhCC-------------------CcEEEeCCCceeH
Confidence 344556667777777642 133 489999999999999999 54321 1356666666765
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
..-++...+.. +..+|..... .+ |
T Consensus 124 v~kaa~~lg~~----------------------------~~~V~~d~~g-------------~i--------d------- 147 (374)
T PLN03032 124 VFKAARMYRME----------------------------AVKVPTLPSG-------------EI--------D------- 147 (374)
T ss_pred HHHHHHHcCCC----------------------------CeEeeeCCCC-------------cC--------c-------
Confidence 54443333211 0111111000 00 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCC-----cEEEeeeeeccccccccch
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI-----PVIFDEVFTGFWRLGVETT 674 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~Gi-----lLI~DEV~TGfGRtG~~~a 674 (817)
.+.|++.|++ ...+..+|++--. ..+-|.+-| +++|.++|++||+ .|-+|=+|.|+ .. .+.-
T Consensus 148 -~~~L~~~i~~-----~~~~~~lvv~tag-tt~tG~idp----i~eI~~i~~~~g~~~~~~~lHvDaA~gg~-~~-p~~~ 214 (374)
T PLN03032 148 -YDDLERALAK-----NRDKPAILNVNIG-TTVKGAVDD----LDRILRILKELGYTEDRFYIHCDGALFGL-MM-PFVS 214 (374)
T ss_pred -HHHHHHHHHH-----cCCCCEEEEEEec-CcCCccCCC----HHHHHHHHHHhCCCCCCeeEEEEccchhh-hh-hccC
Confidence 2567777763 1224445555433 566788877 9999999999975 79999999653 21 1100
Q ss_pred -hhh--cCCCCceeeccc-ccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCC--HHHHHHHHHHHHHhcCcCc
Q 003472 675 -ADL--LGCVPDIACYGK-LLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAH--ALGCAAAAKSIKWFKDPQT 748 (817)
Q Consensus 675 -~e~--~gv~PDivtlgK-~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gn--Pla~AAAlA~L~~l~~~~l 748 (817)
... +....|.++++- .++|.=.++|+++++++..+.+........ ....|..|. ....++.-++|..+-.+++
T Consensus 215 ~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~~~~~Yl~-~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~ 293 (374)
T PLN03032 215 RAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKHVKALSQNVEYLN-SRDATIMGSRNGHAPLYLWYTLRRKGYRGI 293 (374)
T ss_pred CCcccCCCcCCcEEEECcccccCCCcCeEEEEEEchhhHhhccCCcccC-CCCCcccCCCchHHHHHHHHHHHHhCHHHH
Confidence 001 112468776632 344422678899999887766533221000 012344443 2455666677777755444
Q ss_pred hhcHHHHHHHHHHHHHHHH
Q 003472 749 NHNIIPERRILRELWDLEL 767 (817)
Q Consensus 749 ~~~l~~~~~~lg~~l~~~l 767 (817)
.+. .+++-.+.+++.+.+
T Consensus 294 ~~~-~~~~~~~a~~l~~~l 311 (374)
T PLN03032 294 KRD-VQHCMRNAHYLKDRL 311 (374)
T ss_pred HHH-HHHHHHHHHHHHHHH
Confidence 333 233333444444433
|
|
| >PRK11519 tyrosine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0011 Score=81.20 Aligned_cols=63 Identities=13% Similarity=0.137 Sum_probs=47.8
Q ss_pred CCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC
Q 003472 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (817)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~ 289 (817)
+|+|||.+. |+..-....-+++..+.. |+|+..+.-....+..+++.+++.+.++.|+|+|++
T Consensus 636 yD~ViiDtp-----P~~~v~Da~~l~~~~d~~-l~Vvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~v 698 (719)
T PRK11519 636 YDLVLIDTP-----PILAVTDAAIVGRHVGTT-LMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSI 698 (719)
T ss_pred CCEEEEeCC-----CcccchHHHHHHHHCCeE-EEEEeCCCCCHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 999999994 322112234456666654 677777777788888899999999999999999998
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0052 Score=64.80 Aligned_cols=201 Identities=15% Similarity=0.130 Sum_probs=132.8
Q ss_pred ChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCcc
Q 003472 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (817)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~ 521 (817)
.++..++-+.|++++| .+.+-+++..-||-.++|... ..+.+.++.++..|=+|+
T Consensus 60 kPpI~~F~~dlaeFlg---~D~~R~t~GARe~KfavMhal----------------------~~~gd~vV~D~~aHYtty 114 (382)
T COG1103 60 KPPIKDFLEDLAEFLG---MDEVRVTAGAREAKFAVMHAL----------------------CKEGDWVVVDSLAHYTTY 114 (382)
T ss_pred CCcHHHHHHHHHHHhC---CceeeecccchhhHHHHHHHh----------------------ccCCCEEEEcCcchHHHH
Confidence 5677788888999998 578999999999988777655 234578999999998887
Q ss_pred ccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHH
Q 003472 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (817)
Q Consensus 522 galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~ 601 (817)
-|.-..|-..+- .|. -..|... - ....|.
T Consensus 115 vAAEragl~v~e----------------Vp~---------tg~Pey~------------i--------------~~e~y~ 143 (382)
T COG1103 115 VAAERAGLNVAE----------------VPN---------TGYPEYK------------I--------------TPEGYA 143 (382)
T ss_pred HHHHhcCCeEEe----------------cCC---------CCCCceE------------e--------------cHHHHH
Confidence 665544422111 011 0112111 0 012345
Q ss_pred HHHHHHHhcCCCCCCCCcEE-EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC
Q 003472 602 SYISQNLLQNPGLKVSGCIG-ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iA-AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv 680 (817)
+.+++..+ ++++.++ |++.-| .|+-|.++. -+.+.++|++||++|++.=+.| .||.- . ..-.+
T Consensus 144 ~viee~~~-----~~g~~~~lallTh~--Dg~YGNl~D----akkva~ic~e~gvPlllN~AYt-~Grmp---v-s~ke~ 207 (382)
T COG1103 144 EVIEEVKD-----EGGDPPALALLTHV--DGEYGNLAD----AKKVAKICREYGVPLLLNCAYT-VGRMP---V-SGKEI 207 (382)
T ss_pred HHHHHHHh-----ccCCCceEEEEecc--CCCcCCchh----hHHHHHHHHHcCCceEeeccee-ecccc---c-ccccc
Confidence 66666665 3445455 555555 588887776 7899999999999999998887 55542 1 22346
Q ss_pred CCceeecc--cccCCCCCcceEEEechHHHhhhcCCC-c----cceeecccCCCCCHHHHHH
Q 003472 681 VPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDS-K----LKALLHGHSYSAHALGCAA 735 (817)
Q Consensus 681 ~PDivtlg--K~LggGy~PlsAvl~s~~i~d~~~~~~-~----~~~~~h~~T~~gnPla~AA 735 (817)
.+|+++=| |+++.. .|+|.+.++++..+.....+ + ...-+.|-|--|-|+..-.
T Consensus 208 g~DFiVgSGHKsmAAs-~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlm 268 (382)
T COG1103 208 GADFIVGSGHKSMAAS-APIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLM 268 (382)
T ss_pred CCCEEEecCccchhcc-CCeeEEeehhHHHHHHHhhcccccccceeeeecccccCchHHHHH
Confidence 78988654 788876 69999999999887653322 1 1123456777777765443
|
|
| >PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0015 Score=80.05 Aligned_cols=64 Identities=16% Similarity=0.077 Sum_probs=47.8
Q ss_pred CCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC
Q 003472 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG 290 (817)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~ 290 (817)
+|+|||.++-.+.+ ..+.+...+---+|+|+..+.-...++..+++.+.+.+.++.|+|+|++.
T Consensus 641 yD~IIIDtPP~~~~------~Da~~la~~ad~~llVvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~~~ 704 (726)
T PRK09841 641 YDLVIVDTPPMLAV------SDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVI 704 (726)
T ss_pred CCEEEEeCCCcccc------chHHHHHHhCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCceEEEEEeCcc
Confidence 99999999542222 11223233334578888888888999999999999999999999999983
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0015 Score=73.37 Aligned_cols=194 Identities=15% Similarity=0.058 Sum_probs=117.2
Q ss_pred CChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCc
Q 003472 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (817)
Q Consensus 441 ~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t 520 (817)
.++....|++.++++-+ ...++.++||-.|.-.|+.... +....||.+...|+|..
T Consensus 75 ~nPt~~~le~~iaal~g---a~~~l~fsSGmaA~~~al~~L~---------------------~~g~~iV~~~~~Y~gT~ 130 (409)
T KOG0053|consen 75 GNPTRDVLESGIAALEG---AAHALLFSSGMAAITVALLHLL---------------------PAGDHIVATGDVYGGTL 130 (409)
T ss_pred CCCchHHHHHHHHHHhC---CceEEEecccHHHHHHHHHHhc---------------------CCCCcEEEeCCCcccHH
Confidence 46677789999999877 4679999999999999988872 22347899999999843
Q ss_pred cccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHH
Q 003472 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (817)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~ 600 (817)
.. +.-... ..|.. ..|-|.+ +
T Consensus 131 ~~-l~~~~~-------------~~gie------------------------------~~~vd~~----------~----- 151 (409)
T KOG0053|consen 131 RI-LRKFLP-------------KFGGE------------------------------GDFVDVD----------D----- 151 (409)
T ss_pred HH-HHHHHH-------------HhCce------------------------------eeeechh----------h-----
Confidence 21 111100 00000 0122221 1
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC
Q 003472 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (817)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv 680 (817)
.+.++..++ .++-+|.+|.. ..--.-++. +++|+++|+++|+++|+|+...+. .-++-+.+
T Consensus 152 ~~~~~~~i~--------~~t~~V~~ESP-sNPll~v~D----I~~l~~la~~~g~~vvVDnTf~~p------~~~~pL~l 212 (409)
T KOG0053|consen 152 LKKILKAIK--------ENTKAVFLESP-SNPLLKVPD----IEKLARLAHKYGFLVVVDNTFGSP------YNQDPLPL 212 (409)
T ss_pred HHHHHHhhc--------cCceEEEEECC-CCCcccccc----HHHHHHHHhhCCCEEEEeCCcCcc------cccChhhc
Confidence 134454443 37899999986 222233333 899999999999999999998433 22333444
Q ss_pred CCceee--cccccCCCC-CcceEEEec-hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHH
Q 003472 681 VPDIAC--YGKLLTGGV-IPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKW 742 (817)
Q Consensus 681 ~PDivt--lgK~LggGy-~PlsAvl~s-~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~ 742 (817)
-.||++ .-|=++|.= +-.|+++.+ ++....+... ...--+.-+|..|--.+.-|+.
T Consensus 213 GADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~------~~~lg~~~~p~~~~ll~Rglkt 272 (409)
T KOG0053|consen 213 GADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFL------QEDLGWCEDPFDLFLLSRGLKT 272 (409)
T ss_pred CCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHH------HHHhcCCCCHHHHHHHhcCcch
Confidence 479995 568898732 233445553 6666555321 1112244577777655444433
|
|
| >PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00036 Score=73.33 Aligned_cols=53 Identities=11% Similarity=0.107 Sum_probs=42.1
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCC-CCCcHHHHHH
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYP-HDSDSRFLFT 95 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~-~~~d~~~~~~ 95 (817)
|+.+.|+|. +|+||||++..|++.|+ ++|++|+++|+..++.. +..|+..+.+
T Consensus 1 m~vi~ivG~-~gsGKTtl~~~l~~~L~-----~~G~~V~viK~~~~~~d~~~~Dt~r~~~ 54 (229)
T PRK14494 1 MRAIGVIGF-KDSGKTTLIEKILKNLK-----ERGYRVATAKHTHHEFDKPDTDTYRFKK 54 (229)
T ss_pred CeEEEEECC-CCChHHHHHHHHHHHHH-----hCCCeEEEEEecccCCCCCCchHHHHHH
Confidence 678999999 89999999999999994 78999999999776543 2345444333
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0042 Score=71.28 Aligned_cols=83 Identities=18% Similarity=0.160 Sum_probs=48.5
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhH---hhhC-CCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC----
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDL---YRPF-RLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL---- 291 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~l---a~~l-~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~---- 291 (817)
.+|+|||.++|-.. . ++....++ .+.+ ...++||.+...| ..++...+.+. ..+.+.|+|+|+...
T Consensus 182 ~~DvVIIDTaGr~~--~-d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~-~~v~i~giIlTKlD~~~~~ 255 (428)
T TIGR00959 182 GFDVVIVDTAGRLQ--I-DEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFN-ERLGLTGVVLTKLDGDARG 255 (428)
T ss_pred CCCEEEEeCCCccc--c-CHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHH-hhCCCCEEEEeCccCcccc
Confidence 48999999999533 1 11122222 2222 2358999997644 33333333333 346789999999842
Q ss_pred CCHHHHHHhhcCCCcEEec
Q 003472 292 VNEVPLMSYLRNRVPVLVL 310 (817)
Q Consensus 292 ~~~~~l~~~~~~~~pvlgi 310 (817)
.....+...+ ++|+.-+
T Consensus 256 G~~lsi~~~~--~~PI~fi 272 (428)
T TIGR00959 256 GAALSVRSVT--GKPIKFI 272 (428)
T ss_pred cHHHHHHHHH--CcCEEEE
Confidence 2344455566 8898664
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0015 Score=67.85 Aligned_cols=90 Identities=9% Similarity=0.080 Sum_probs=51.0
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHH---HHHHHHHhC-CCcEEEEEEccCCCCC-H
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTI---SAYESLKLR-GYDVVAVVFEDHGLVN-E 294 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~---~~~~~l~~~-~~~v~gvi~n~~~~~~-~ 294 (817)
+||+|||-+.|++.... ....++...--.+|+|+....-++..+- ..++.++.. +.++.|+|+|++.... .
T Consensus 116 ~yD~ilID~~g~~~~~~----~~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~~~~ 191 (212)
T cd02117 116 DLDVVLYDVLGDVVCGG----FAMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDRET 191 (212)
T ss_pred CCCEEEEecCCCceecc----cccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCccHH
Confidence 49999999965432111 0011111122257788887765654444 444444332 6678999999995432 2
Q ss_pred HHHHHhhcC-CCcEEe-cCCC
Q 003472 295 VPLMSYLRN-RVPVLV-LPPL 313 (817)
Q Consensus 295 ~~l~~~~~~-~~pvlg-iP~~ 313 (817)
+.+++..+. +.|+++ ||+.
T Consensus 192 ~~~~~~~~~~~~~vl~~IP~d 212 (212)
T cd02117 192 ELIDAFAERLGTQVIHFVPRD 212 (212)
T ss_pred HHHHHHHHHcCCCEEEecCCC
Confidence 222332222 899999 9963
|
Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate. |
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.011 Score=70.18 Aligned_cols=105 Identities=17% Similarity=0.172 Sum_probs=64.1
Q ss_pred HHHHHHHhcCCCCCCCCcEE-EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccc-cccc-hhhh-
Q 003472 602 SYISQNLLQNPGLKVSGCIG-ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL-GVET-TADL- 677 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iA-AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRt-G~~~-a~e~- 677 (817)
+.|++.+++.. ....++. .+|+-| +.=.|.+. +.+-+++|.++|++||+++|.|||..-+--. |+.+ .+..
T Consensus 256 ~~Le~~l~~~~--~~~~~~k~ivl~nP--~NPTG~vl-s~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~ 330 (534)
T PLN02231 256 SELKKQLEDAR--SKGITVRALVVINP--GNPTGQVL-AEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKV 330 (534)
T ss_pred HHHHHHHHHHh--hcCCCeEEEEEeCC--CCCCCcCC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHH
Confidence 45555554310 1112344 466666 34456655 8999999999999999999999999765221 2221 1111
Q ss_pred ---cCC---CCcee---ecccccCC--CCCcceEEEe---chHHHhhhc
Q 003472 678 ---LGC---VPDIA---CYGKLLTG--GVIPLAATLA---TNAVFDSFV 712 (817)
Q Consensus 678 ---~gv---~PDiv---tlgK~Lgg--Gy~PlsAvl~---s~~i~d~~~ 712 (817)
.|. ...++ .+||++.| | +-+|.+++ .+++.+.+.
T Consensus 331 ~~~~g~~~~~~~vi~l~S~SK~~~g~pG-lRiGy~~~~~~~~~l~~~l~ 378 (534)
T PLN02231 331 ARSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFTSDVREQIY 378 (534)
T ss_pred HhhhccccCCceEEEEeccCcccccCCc-cceEEEEEecCCHHHHHHHH
Confidence 121 11244 67998753 6 67777775 678888774
|
|
| >COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00094 Score=68.60 Aligned_cols=199 Identities=14% Similarity=0.189 Sum_probs=113.0
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhCCCCccccCCCcccccccch
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (817)
.+.+.||+--.||||||.|+.|.-+|. ++|+||+..-- .-|.+ |.---+=++|++
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA-----~~GkKv~liD~-DiGLR-------------------NLDlimGlE~Ri 56 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALA-----QLGKKVVLIDF-DIGLR-------------------NLDLIMGLENRI 56 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHH-----HcCCeEEEEec-CcCch-------------------hhhhhhccccee
Confidence 367899999999999999999999995 88999987652 11110 000000011111
Q ss_pred hhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHhHhcCCCCChHH
Q 003472 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSK 196 (817)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~ 196 (817)
... ....+ ...-+++...++ .-.+.|++.++. ++.+. ...++.++
T Consensus 57 VYd-~vdVi----~g~~~l~QALIk-----------------------DKr~~nL~lLPA------sQtrd-Kdalt~E~ 101 (272)
T COG2894 57 VYD-LVDVI----EGEATLNQALIK-----------------------DKRLENLFLLPA------SQTRD-KDALTPEG 101 (272)
T ss_pred eee-ehhhh----cCccchhhHhhc-----------------------cccCCceEeccc------ccccC-cccCCHHH
Confidence 100 00000 000000000000 012356776632 22222 33567888
Q ss_pred HHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHh
Q 003472 197 VIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL 276 (817)
Q Consensus 197 i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~ 276 (817)
+...++++.+. .+|++||...-|+-.+ +..|-..--..|+|+.+...++..+---+.+|.+
T Consensus 102 v~~vv~eL~~~------------~fDyIi~DsPAGIE~G-------~~~A~~~Ad~AiVVtnPEvSsVRDsDRiiGlLes 162 (272)
T COG2894 102 VKKVVNELKAM------------DFDYIIIDSPAGIEQG-------FKNAVYFADEAIVVTNPEVSSVRDSDRIIGLLES 162 (272)
T ss_pred HHHHHHHHHhc------------CCCEEEecCcchHHHH-------HHhhhhccceEEEEcCCCccccccchhheeehhc
Confidence 88877777642 3999999886554333 3334444445788888877766555444444543
Q ss_pred CC------Cc-EEEEEEccC--------CCCCHHHHHHhhcCCCcEEe-cCCCCCC
Q 003472 277 RG------YD-VVAVVFEDH--------GLVNEVPLMSYLRNRVPVLV-LPPLPQD 316 (817)
Q Consensus 277 ~~------~~-v~gvi~n~~--------~~~~~~~l~~~~~~~~pvlg-iP~~~~~ 316 (817)
.+ -. -.-+|+|+. ..-..+.+.+.+ .+|++| ||...+.
T Consensus 163 k~~rae~~~~~~~~llvnR~~p~~v~~GeMlsv~Dv~~iL--~i~liGiiPed~~V 216 (272)
T COG2894 163 KSRRAEIGEEPKEHLLLNRYRPEMVKRGEMLSVEDVLEIL--SIPLIGVIPEDQDV 216 (272)
T ss_pred ccchhhcCCcccceEEEEccCHHHhccCCcccHHHHHHHh--CCceEEeecCchhh
Confidence 33 11 257899997 223466778888 999999 9987664
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.033 Score=63.10 Aligned_cols=178 Identities=13% Similarity=0.163 Sum_probs=96.7
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhh-----cCCcEEEeeeeeccccccccc--hh-hhcCCCCce--e---ecc
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQN-----RKIPVIFDEVFTGFWRLGVET--TA-DLLGCVPDI--A---CYG 688 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~-----~GilLI~DEV~TGfGRtG~~~--a~-e~~gv~PDi--v---tlg 688 (817)
-++.-| +.=-|.+. +++-+++|.++|++ |++++|.||+...|--.+... .. ...+..+.+ + .++
T Consensus 150 ~~~~~P--~NPTG~~~-s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~S 226 (388)
T PRK08637 150 VILNFP--NNPTGYTP-TEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGAT 226 (388)
T ss_pred EEEeCC--CCCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEecccc
Confidence 344456 45556554 88899999998875 999999999998773333311 11 112333443 2 589
Q ss_pred cccC-CCCCcceEEEec------hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHH
Q 003472 689 KLLT-GGVIPLAATLAT------NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRE 761 (817)
Q Consensus 689 K~Lg-gGy~PlsAvl~s------~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~ 761 (817)
|.++ .| +-+|.+++. +++.+.+..... .......++.+.++.+++.+.| +++.+...+.+....+.+
T Consensus 227 K~~~~pG-lRlG~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~s~~~q~a~~~~l---~~~~~~~~~~~~~~~~~~ 300 (388)
T PRK08637 227 KEEFVWG-FRVGFITFGTKAGSSQTVKEALEKKVK--GLIRSNISNGPHPSQSAVLRAL---NSPEFDKEKQEKFQILKE 300 (388)
T ss_pred ccCCCcc-cceEEEEEccccCCcHHHHHHHHHHHH--HHhhcccCCCCcHHHHHHHHHh---CCHHHHHHHHHHHHHHHH
Confidence 9865 47 788888753 677766632100 0001122356778888776665 343333333333333332
Q ss_pred HHHHHHHHHHHcCC---CcceEE-eeeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCCC
Q 003472 762 LWDLELIQQISSHR---TVQRVV-ALGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 762 ~l~~~l~~~l~~~p---~V~~Vr-G~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv~ 816 (817)
... .+.+.+++++ .+.-.. .-|+++-+.+.. .....+...++ ++||.
T Consensus 301 r~~-~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~-------~~~~~l~~~l~~~~gv~ 352 (388)
T PRK08637 301 RYE-KTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKG-------VDAEELRVHLLEKYGIG 352 (388)
T ss_pred HHH-HHHHHHHhhCCCCCcccccccceEEEEecCCh-------HHHHHHHHHHhhhcceE
Confidence 211 2334444442 222222 347777777742 13456777776 45763
|
|
| >PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0024 Score=68.58 Aligned_cols=90 Identities=11% Similarity=0.050 Sum_probs=52.9
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHH----hCCCcEEEEEEccCCCCCHH
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK----LRGYDVVAVVFEDHGLVNEV 295 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~----~~~~~v~gvi~n~~~~~~~~ 295 (817)
++|+|||-+.|++..... .+ .+..- --||+|+....-++..+...++.++ ..++++.|+|+|+... ..
T Consensus 117 ~yD~viIDt~g~~~~~~~---~~--~l~~A-D~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~--~~ 188 (270)
T PRK13185 117 DYDVILFDVLGDVVCGGF---AA--PLQYA-DYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG--TD 188 (270)
T ss_pred cCCEEEEecCCCcccCcc---cc--hhhhC-cEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh--HH
Confidence 499999999654432210 00 01111 1377777777666666555555544 3456788999999642 22
Q ss_pred HHHHhhcC-CCcEEe-cCCCCCCC
Q 003472 296 PLMSYLRN-RVPVLV-LPPLPQDS 317 (817)
Q Consensus 296 ~l~~~~~~-~~pvlg-iP~~~~~~ 317 (817)
.+++..+. +.++++ ||......
T Consensus 189 ~~~~~~~~~g~~vl~~Ip~~~~i~ 212 (270)
T PRK13185 189 LIDKFNEAVGLKVLAHVPDLDAIR 212 (270)
T ss_pred HHHHHHHHcCCCEEEECCCCcccC
Confidence 33333322 889999 88775544
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.012 Score=69.44 Aligned_cols=140 Identities=11% Similarity=-0.025 Sum_probs=78.3
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC-CCceeecc--cccCCCC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACYG--KLLTGGV 695 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivtlg--K~LggGy 695 (817)
++.+|+.-.- ..+-|.+.| +++|.++|+++|+.|.+|=++.|....-.-+-...-|+ ..|.+|++ |-+.+-
T Consensus 265 ~~~~vvataG-tt~tGaiDp----l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P- 338 (522)
T TIGR03799 265 KPLAIVGVAG-TTETGNIDP----LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVP- 338 (522)
T ss_pred CcEEEEEEec-CcCCCCcCC----HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcC-
Confidence 4555655332 345678877 99999999999999999999965421111111112355 67988774 666655
Q ss_pred CcceEEEech-HHHhhhcCCCcc----ce-eecccCCCCC-HHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHH
Q 003472 696 IPLAATLATN-AVFDSFVGDSKL----KA-LLHGHSYSAH-ALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDL 765 (817)
Q Consensus 696 ~PlsAvl~s~-~i~d~~~~~~~~----~~-~~h~~T~~gn-Pla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~ 765 (817)
+.+|++++++ +..+.+...... .. -....|+.+. +.......++|+.+...++ +.+.++.-.+.++|.+
T Consensus 339 ~g~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~-~~ii~~~~~la~~l~~ 414 (522)
T TIGR03799 339 MGAGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGY-ELLIDQSIEKAKYFAD 414 (522)
T ss_pred cccEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHH
Confidence 5778888874 444544321100 00 0001233332 2212235677888765443 4555555566665544
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.038 Score=63.79 Aligned_cols=90 Identities=8% Similarity=-0.121 Sum_probs=57.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhc------CCcEEEeeeeecccc---cccc
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR------KIPVIFDEVFTGFWR---LGVE 672 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~------GilLI~DEV~TGfGR---tG~~ 672 (817)
+.|++.|++ ++..|++--+ ..+-|.+.| +++|.++|+++ |+++.+|=+|.|+-. .++.
T Consensus 177 ~~L~~~i~~--------~t~lV~~t~g-~t~tG~idp----i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~ 243 (431)
T TIGR01788 177 EQVVEAVDE--------NTIGVVCILG-TTYTGEYED----VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDL 243 (431)
T ss_pred HHHHHHHhh--------CCeEEEEEeC-CCCCcccCC----HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCc
Confidence 567777752 2345555544 677888888 99999999999 999999999976421 2321
Q ss_pred -chhhhcCCCCceeecc-cccCCCCCcceEEEechH
Q 003472 673 -TTADLLGCVPDIACYG-KLLTGGVIPLAATLATNA 706 (817)
Q Consensus 673 -~a~e~~gv~PDivtlg-K~LggGy~PlsAvl~s~~ 706 (817)
+-+. ....|.++++ -.++.|-..+|++++++.
T Consensus 244 ~~~~~--~~~~DSis~s~HK~~~~P~g~G~l~~r~~ 277 (431)
T TIGR01788 244 EWDFR--LPRVKSINVSGHKYGLVYPGVGWVIWRDE 277 (431)
T ss_pred hhhcC--CCCceEEEECchhccCCCCCcEEEEEeCh
Confidence 1111 1245777663 233433245678888765
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0019 Score=75.46 Aligned_cols=150 Identities=13% Similarity=0.032 Sum_probs=79.7
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceee--cccccCCCCC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVI 696 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgK~LggGy~ 696 (817)
+...||+...... ...+ +++++++|+++|++|++|-.|+ .|-........-+. ..|++| .-|.|.|=-
T Consensus 298 rPKLII~g~Sayp---r~~D----~~~i~eIAdevGA~LmvD~AH~-aGLIa~g~~~sP~~-~aDvvt~TTHKtLrGPr- 367 (586)
T PLN02271 298 RPKILICGGSSYP---REWD----YARFRQIADKCGAVLMCDMAHI-SGLVAAKECVNPFD-YCDIVTSTTHKSLRGPR- 367 (586)
T ss_pred CCeEEEECchhcc---CcCC----HHHHHHHHHHcCCEEEEECccc-ccccccCcCCCCCc-CCcEEEeCCcccCCCCC-
Confidence 4567777553111 2223 8899999999999999999996 33332211111111 369884 569986510
Q ss_pred cceEEEechHH--------------------HhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCc---CchhcHH
Q 003472 697 PLAATLATNAV--------------------FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDP---QTNHNII 753 (817)
Q Consensus 697 PlsAvl~s~~i--------------------~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~---~l~~~l~ 753 (817)
-|.++++++. .+.+... .++.+.+++.... .|+-..+++.+..+ ++.+++.
T Consensus 368 -GG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~a--VfPglqgGphn~~---IAalAvalkea~~~efk~Ya~QVv 441 (586)
T PLN02271 368 -GGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFA--VFPSLQGGPHNNH---IAALAIALKQVATPEYKAYMQQVK 441 (586)
T ss_pred -ceEEEecccccccccCCccccccccccHHHHHHhhcc--cCCccccChhHHH---HHHHHHHHHHHhChHHHHHHHHHH
Confidence 0335555532 2222111 1222222222222 33333345544443 3668889
Q ss_pred HHHHHHHHHHHHHHHHHHH----cCCCcceEEeee
Q 003472 754 PERRILRELWDLELIQQIS----SHRTVQRVVALG 784 (817)
Q Consensus 754 ~~~~~lg~~l~~~l~~~l~----~~p~V~~VrG~G 784 (817)
+|++.|.+.|.++..+++. .|=.+.|+|..|
T Consensus 442 ~NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g 476 (586)
T PLN02271 442 KNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLG 476 (586)
T ss_pred HHHHHHHHHHHHCCCeEeeCCCCcceeeecCcccC
Confidence 9999999877765555442 122345666554
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0037 Score=67.13 Aligned_cols=151 Identities=14% Similarity=0.121 Sum_probs=92.9
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC
Q 003472 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (817)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv 680 (817)
++.+++.|.+ .++.+|.+-=. -++-|+.- ..++...++|++|+++|++|-|-+ + .|.-|.++.+||
T Consensus 131 le~i~~~lsq-------h~p~~vfv~hg-dsSTgV~q---~~~~~~g~lc~k~~~lllVD~VaS-l--ggt~F~mDewgV 196 (385)
T KOG2862|consen 131 LEEITEKLSQ-------HKPKAVFVTHG-DSSTGVLQ---DLLAISGELCHKHEALLLVDTVAS-L--GGTEFEMDEWGV 196 (385)
T ss_pred HHHHHHHHHh-------cCCceEEEEec-Cccccccc---hHHHHHHHHhhcCCeEEEEechhh-c--CCccceehhhcc
Confidence 3667777774 23444444332 34456644 357788899999999999999986 3 466889999987
Q ss_pred CCceeecccccCC--CCCcceEEEechHHHhhhcCCC-ccceeecccCCCCC---------------HHH-HHHHHHHHH
Q 003472 681 VPDIACYGKLLTG--GVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAH---------------ALG-CAAAAKSIK 741 (817)
Q Consensus 681 ~PDivtlgK~Lgg--Gy~PlsAvl~s~~i~d~~~~~~-~~~~~~h~~T~~gn---------------Pla-~AAAlA~L~ 741 (817)
+-=+.--=|+||+ |. +-+..++...+.+.... +...+++..-.-+| |+. .-.-.++|+
T Consensus 197 DvaytgSQKaL~aP~GL---siisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~ 273 (385)
T KOG2862|consen 197 DVAYTGSQKALGAPAGL---SIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALA 273 (385)
T ss_pred cEEEecchhhcCCCCCc---ceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHH
Confidence 5444455689986 74 34777888888776532 11222222212222 222 234557888
Q ss_pred HhcCcCchhcHHHHHHHHHHHHHHHHHH
Q 003472 742 WFKDPQTNHNIIPERRILRELWDLELIQ 769 (817)
Q Consensus 742 ~l~~~~l~~~l~~~~~~lg~~l~~~l~~ 769 (817)
.|-++++ ++.+++-+++++.++..+.+
T Consensus 274 ~I~eeGL-~~~~~rH~e~s~~l~~~l~~ 300 (385)
T KOG2862|consen 274 LIAEEGL-ENSWRRHREMSKWLKLSLEA 300 (385)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 8877665 44455556666666655544
|
|
| >COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.004 Score=64.59 Aligned_cols=99 Identities=13% Similarity=0.199 Sum_probs=62.3
Q ss_pred CCEEEEeC-----CCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHH---HHHHHH-hCCCcEEEEEEccCCC
Q 003472 221 EILCIVET-----AGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTIS---AYESLK-LRGYDVVAVVFEDHGL 291 (817)
Q Consensus 221 ~d~vivEG-----agg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~---~~~~l~-~~~~~v~gvi~n~~~~ 291 (817)
-|+|+-.= .||++.|+.+++.+ .|.+|+++....+-++-. ++.-+. ..+.++-|+|.|.-.-
T Consensus 118 ~DvviyDVLGDVVCGGFAmPiReg~Ad---------eiyIVtSge~MalYAANNI~kgi~k~a~~~~~rLgGiIcNsr~~ 188 (278)
T COG1348 118 LDVVIYDVLGDVVCGGFAMPIREGYAD---------EIYIVTSGEMMALYAANNIAKGIRKYAKTGGVRLGGIICNSRSV 188 (278)
T ss_pred CCEEEEeccCceeecceeeehhcccCc---------EEEEEecCchHHHHHHHHHHHHHHHHhhcCCcceeeEEecCCCc
Confidence 36655432 37888898765543 577888888766544443 333333 3557899999998643
Q ss_pred CCH-HHHHHhhcC-CCcEEe-cCCCCCCC-----cchhhhhhccc
Q 003472 292 VNE-VPLMSYLRN-RVPVLV-LPPLPQDS-----SNDLMEWFDES 328 (817)
Q Consensus 292 ~~~-~~l~~~~~~-~~pvlg-iP~~~~~~-----~~~~~~~l~~~ 328 (817)
... +.++++.+. +-|+++ ||..+... ..++.|+.-++
T Consensus 189 ~~e~e~v~~fa~~igt~li~~vPr~~ivq~aE~~~kTvie~~P~s 233 (278)
T COG1348 189 DRERELVEAFAERLGTQLIHFVPRDNIVQKAELNGKTVIEYAPDS 233 (278)
T ss_pred ccHHHHHHHHHHHhCCceEeeccchHHHHHHHHcCcchhhhCcch
Confidence 333 334444333 999999 99987654 23666666444
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.014 Score=68.50 Aligned_cols=96 Identities=10% Similarity=-0.061 Sum_probs=61.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC-
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv- 680 (817)
+.|++.|++.. ..+..+.+|+.--- ...-|.+-| +++|.++|++||+.|-+|=++.|+-..-..+-...-|+
T Consensus 224 ~~L~~~i~~~~--~~g~~p~~vvataG-TT~~GaiDp----l~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie 296 (490)
T PLN02880 224 ELLSEAISTDL--SSGLIPFFLCATVG-TTSSTAVDP----LLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVE 296 (490)
T ss_pred HHHHHHHHHHH--HCCCccEEEEEecC-CCcCcccCc----HHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCch
Confidence 45555554310 12334455555542 455677777 99999999999999999988865433222222223465
Q ss_pred CCceeec--ccccCCCCCcceEEEech
Q 003472 681 VPDIACY--GKLLTGGVIPLAATLATN 705 (817)
Q Consensus 681 ~PDivtl--gK~LggGy~PlsAvl~s~ 705 (817)
..|-+++ -|-+..- ++.|+++++.
T Consensus 297 ~aDSit~d~HKwl~~P-~~~g~llvr~ 322 (490)
T PLN02880 297 EADSFNMNAHKWFLTN-FDCSLLWVKD 322 (490)
T ss_pred hcCEEEECchhhcCCC-ccEEEEEEeC
Confidence 5787754 6877666 6888888875
|
|
| >TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0029 Score=67.92 Aligned_cols=88 Identities=11% Similarity=0.085 Sum_probs=52.1
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHh----CCCcEEEEEEccCCCC-CH
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL----RGYDVVAVVFEDHGLV-NE 294 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~----~~~~v~gvi~n~~~~~-~~ 294 (817)
++|+|||-+.|++..+... . ....-+ -+|+|+....-++..+...++.++. .++++.|+|+|++... ..
T Consensus 115 ~yD~ViID~~~~~~~~~~~---~--~l~aAD-~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~~~~ 188 (268)
T TIGR01281 115 DYDVILFDVLGDVVCGGFA---T--PLQYAD-YALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDATDLI 188 (268)
T ss_pred cCCEEEEecCCccccCccc---c--chhhcC-EEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChHHHH
Confidence 4999999997755433211 0 111111 2556666666566665555554442 4577899999998432 22
Q ss_pred HHHHHhhcCCCcEEe-cCCCCC
Q 003472 295 VPLMSYLRNRVPVLV-LPPLPQ 315 (817)
Q Consensus 295 ~~l~~~~~~~~pvlg-iP~~~~ 315 (817)
+.+.+.+ +.|+++ ||....
T Consensus 189 ~~~~~~~--~~~vl~~I~~~~~ 208 (268)
T TIGR01281 189 ERFNERV--GMPVLGVVPDLEV 208 (268)
T ss_pred HHHHHHc--CCCEEEEcCCChH
Confidence 2233334 899999 887654
|
The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit. |
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0018 Score=73.60 Aligned_cols=228 Identities=15% Similarity=0.142 Sum_probs=123.3
Q ss_pred ChHHHHHHHHHHhhcCCCCcceEEEeCChHH-HHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCc
Q 003472 442 YEPALECAELLLQGVGKGWASRAYFSDNGST-AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (817)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~~~~v~f~~SGse-A~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t 520 (817)
..+..+..+.+++.+| .++.+|...||. +|.+++..+ ..+.+.|.++...|-+.
T Consensus 65 ~G~I~eAe~~aA~~fG---Ad~t~flvnGsT~g~~a~i~a~----------------------~~~gd~VLv~RN~HkSv 119 (417)
T PF01276_consen 65 EGIIKEAEELAARAFG---ADKTFFLVNGSTSGNQAMIMAL----------------------CRPGDKVLVDRNCHKSV 119 (417)
T ss_dssp BTHHHHHHHHHHHHHT---ESEEEEESSHHHHHHHHHHHHH----------------------TTTTCEEEEETT--HHH
T ss_pred ccHHHHHHHHHHHhcC---CCeEEEEecCchHHHHHHHHHh----------------------cCCCCEEEEcCCcHHHH
Confidence 4566677777777888 578888766654 555555554 12346788999999999
Q ss_pred cccccccCCC-CCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 521 LGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 521 ~galslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
+.++-++|.. .|-.+ . ....+. ..+++ - +++.
T Consensus 120 ~~alil~ga~Pvyi~p----------------~-~~~~gi-~~~i~--------------~-------------~~~~-- 152 (417)
T PF01276_consen 120 YNALILSGAIPVYIPP----------------E-DNEYGI-IGGIS--------------P-------------DEFN-- 152 (417)
T ss_dssp HHHHHHHTEEEEEEEE----------------E-E-TTS--BEEB---------------G-------------GGGS--
T ss_pred HHHHHHcCCeEEEecC----------------C-ccccCC-ccCCC--------------h-------------hhhh--
Confidence 9999998742 22111 0 000000 00000 0 0000
Q ss_pred HHHHHHHHHhcCCCCCCCCcEE---EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhh
Q 003472 600 YSSYISQNLLQNPGLKVSGCIG---ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iA---AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e 676 (817)
.+.+++.|++. ++.-+ +||+-|-. .|+... ++.|.++|+++|++|++||++.+.-+...+ -..
T Consensus 153 -~~~i~~~l~~~-----p~~k~~~~vvlt~PTY---~Gv~~d----i~~I~~~~h~~~~~llvDEAhGah~~F~~l-p~~ 218 (417)
T PF01276_consen 153 -EEDIEEALKEH-----PDAKAPRLVVLTSPTY---YGVCYD----IKEIAEICHKHGIPLLVDEAHGAHFGFHPL-PRS 218 (417)
T ss_dssp -HHHHHHHHHHC-----TTCHCESEEEEESS-T---TSEEE-----HHHHHHHHCCTECEEEEE-TT-TTGGCSGG-GTT
T ss_pred -HHHHHHHHHhC-----ccccCceEEEEeCCCC---CeEEEC----HHHHHHHhcccCCEEEEEccccccccCCCC-ccc
Confidence 15677778752 33333 78888853 467776 999999999999999999999654444422 223
Q ss_pred hcCCCCc-------eeec--ccccCCCCCcceEEEechHH-H--hhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhc
Q 003472 677 LLGCVPD-------IACY--GKLLTGGVIPLAATLATNAV-F--DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK 744 (817)
Q Consensus 677 ~~gv~PD-------ivtl--gK~LggGy~PlsAvl~s~~i-~--d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~ 744 (817)
....-.| ++|- =|.|++ +-.-|.+..+.+- . +.+.. .+..-.|.+-+=+-+|..-.+.++++
T Consensus 219 a~~~gad~~~~~~~~vvqS~HKtL~a-ltQts~lh~~~~~~v~~~~~~~-----~l~~~~TTSPSY~lmASlD~a~~~m~ 292 (417)
T PF01276_consen 219 ALALGADRPNDPGIIVVQSTHKTLPA-LTQTSMLHVKGDRIVDHERVNE-----ALSMHQTTSPSYPLMASLDVARAQME 292 (417)
T ss_dssp CSSTTSS-CTSBEEEEEEEHHHHSSS--TT-EEEEEETCCCTTHHHHHH-----HHHHHS-SS--HHHHHHHHHHHHHHS
T ss_pred hhhccCccccccceeeeechhhcccc-cccceEEEecCCCcccHHHHHH-----HHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 3445566 7754 466654 2334455555542 2 22211 12233466666666666666667772
Q ss_pred -C--cCchhcHHHHHHHHHH
Q 003472 745 -D--PQTNHNIIPERRILRE 761 (817)
Q Consensus 745 -~--~~l~~~l~~~~~~lg~ 761 (817)
+ ..+.++..+++..+++
T Consensus 293 ~~~G~~l~~~~i~~a~~~R~ 312 (417)
T PF01276_consen 293 EEEGRELLEEAIELAEEFRK 312 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 2 2344455555544444
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >CHL00072 chlL photochlorophyllide reductase subunit L | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0021 Score=70.14 Aligned_cols=90 Identities=13% Similarity=0.066 Sum_probs=52.7
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHh----CCCcEEEEEEccCC-CCCH
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL----RGYDVVAVVFEDHG-LVNE 294 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~----~~~~v~gvi~n~~~-~~~~ 294 (817)
++|+|||-+.|++..+.- . .....-+ -||+|+....-++..+-..++.++. .+.++.|+|+|++. ....
T Consensus 115 ~yD~IiIDt~~~l~~~a~---~--aal~~AD-~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~~~~ 188 (290)
T CHL00072 115 EYDIILFDVLGDVVCGGF---A--APLNYAD-YCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTSKRDLI 188 (290)
T ss_pred cCCEEEEecCCcceechh---h--hhhhcCC-EEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCchhHH
Confidence 499999999665332210 0 0011111 2667777776566555555544442 35678999999984 2223
Q ss_pred HHHHHhhcCCCcEEe-cCCCCCCC
Q 003472 295 VPLMSYLRNRVPVLV-LPPLPQDS 317 (817)
Q Consensus 295 ~~l~~~~~~~~pvlg-iP~~~~~~ 317 (817)
..+.+.+ +.|+++ ||+.....
T Consensus 189 ~~~~~~~--~~~vl~~Ip~~~~v~ 210 (290)
T CHL00072 189 DKYVEAC--PMPVLEVLPLIEDIR 210 (290)
T ss_pred HHHHHHc--CCceEEECCCChHHH
Confidence 3344444 889999 99765543
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0071 Score=68.43 Aligned_cols=235 Identities=16% Similarity=0.119 Sum_probs=133.3
Q ss_pred CChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCc
Q 003472 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (817)
Q Consensus 441 ~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t 520 (817)
.++....|+++++++=| .+.++.++||-.|+.+++-... + + -..|+..+..|.|.-
T Consensus 61 ~nPT~~~lE~~~a~LEg---~~~~~afsSGmaAI~~~~l~ll-----~---------------~-GD~vl~~~~~YG~t~ 116 (396)
T COG0626 61 GNPTRDALEEALAELEG---GEDAFAFSSGMAAISTALLALL-----K---------------A-GDHVLLPDDLYGGTY 116 (396)
T ss_pred CCccHHHHHHHHHHhhC---CCcEEEecCcHHHHHHHHHHhc-----C---------------C-CCEEEecCCccchHH
Confidence 47778899999999876 3689999999999988866552 1 1 136777777787632
Q ss_pred cccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHH
Q 003472 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (817)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~ 600 (817)
...-.+- ..+|. ++.|-|. .+
T Consensus 117 ~~~~~~l--------------~~~gi------------------------------~~~~~d~-------~~-------- 137 (396)
T COG0626 117 RLFEKIL--------------QKFGV------------------------------EVTFVDP-------GD-------- 137 (396)
T ss_pred HHHHHHH--------------HhcCe------------------------------EEEEECC-------CC--------
Confidence 2211110 00010 0111111 00
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC
Q 003472 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (817)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv 680 (817)
.+.+++.+. +.++.+|.+|+. ..----+.. +++|.++++++|+++|+|....+ +. .++-+..
T Consensus 138 ~~~~~~~~~-------~~~tk~v~lEtP-sNP~l~v~D----I~~i~~~A~~~g~~vvVDNTfat----P~--~q~PL~~ 199 (396)
T COG0626 138 DEALEAAIK-------EPNTKLVFLETP-SNPLLEVPD----IPAIARLAKAYGALVVVDNTFAT----PV--LQRPLEL 199 (396)
T ss_pred hHHHHHHhc-------ccCceEEEEeCC-CCccccccc----HHHHHHHHHhcCCEEEEECCccc----cc--ccChhhc
Confidence 022333332 246889999996 222222222 89999999999999999999842 11 1233333
Q ss_pred CCcee--ecccccCCCC-CcceEEEe-chHHHhhhcCCCccceeecccC-CC--CCHHHHHHHHHHHHHhcCcCchhcHH
Q 003472 681 VPDIA--CYGKLLTGGV-IPLAATLA-TNAVFDSFVGDSKLKALLHGHS-YS--AHALGCAAAAKSIKWFKDPQTNHNII 753 (817)
Q Consensus 681 ~PDiv--tlgK~LggGy-~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T-~~--gnPla~AAAlA~L~~l~~~~l~~~l~ 753 (817)
-.||+ ..-|=|+|.- +-.|++++ ++++.+.+.. .... ++ ..|..|=-.+-.|+-+.- ..++..
T Consensus 200 GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~--------~~~~~~G~~l~p~dA~l~lRGlkTL~~--Rm~~~~ 269 (396)
T COG0626 200 GADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFF--------AQRANTGAVLSPFDAWLLLRGLRTLAL--RMERHN 269 (396)
T ss_pred CCCEEEEeccccccCCcceeeeEEecChHHHHHHHHH--------HHHhhcCCCCCHHHHHHHHhccchHHH--HHHHHH
Confidence 47888 4679998732 23344554 4455554311 1111 21 245555444444443311 124455
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcceEE------------------eeeeEEEEEEecC
Q 003472 754 PERRILRELWDLELIQQISSHRTVQRVV------------------ALGTLCAIELQAA 794 (817)
Q Consensus 754 ~~~~~lg~~l~~~l~~~l~~~p~V~~Vr------------------G~Glm~gIel~~~ 794 (817)
+++..+.+ .++++|.|..|. |.|-|++|+|...
T Consensus 270 ~nA~~IA~--------~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~ 320 (396)
T COG0626 270 ENALKIAE--------FLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNE 320 (396)
T ss_pred HHHHHHHH--------HHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCCh
Confidence 55555444 445566666553 5889999999873
|
|
| >COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0074 Score=64.88 Aligned_cols=102 Identities=16% Similarity=0.185 Sum_probs=71.2
Q ss_pred CChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHH
Q 003472 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (817)
Q Consensus 192 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~ 271 (817)
++.++....++++... +|++||-...|+.-+. ....... --+|+|+....-++..+..++
T Consensus 97 ~~~~~~~~~~~~l~~~-------------~D~iliD~~aGl~~~~------~~~~~~s-d~~viVt~pe~~si~~A~~~i 156 (262)
T COG0455 97 LDPEDLEDVIKELEEL-------------YDYILIDTGAGLSRDT------LSFILSS-DELVIVTTPEPTSITDAYKTI 156 (262)
T ss_pred cCHHHHHHHHHHHHhc-------------CCEEEEeCCCCccHHH------HHHHHhc-CcEEEEeCCCcchHHHHHHHH
Confidence 5667777777766654 7999999876654332 2222222 467889999999999999999
Q ss_pred HHHHhCCCcEEE--EEEccCC--CCCHH---HHHHhhcCCCcEEe-cCCCC
Q 003472 272 ESLKLRGYDVVA--VVFEDHG--LVNEV---PLMSYLRNRVPVLV-LPPLP 314 (817)
Q Consensus 272 ~~l~~~~~~v~g--vi~n~~~--~~~~~---~l~~~~~~~~pvlg-iP~~~ 314 (817)
+.+...+....+ +|+|++. .+..+ .+.+... .+|++. +|+.+
T Consensus 157 ~~~~~~~~~~~~~~vV~N~v~~~~e~~~~~~~~~~~~~-~~~~~~~i~~~~ 206 (262)
T COG0455 157 KILSKLGLDLLGRRVVLNRVRSTKEGVDVAALLIQVVK-QVPVLQVIPFDP 206 (262)
T ss_pred HHHHHcCCccccceEEEEecccccchhHHHHHHHHHHH-hCCceeEeccCh
Confidence 999999999888 9999983 23222 2222222 566777 89888
|
|
| >cd02032 Bchl_like This family of proteins contains bchL and chlL | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0038 Score=67.05 Aligned_cols=90 Identities=12% Similarity=0.147 Sum_probs=52.5
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHH----hCCCcEEEEEEccCCCCCHH
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK----LRGYDVVAVVFEDHGLVNEV 295 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~----~~~~~v~gvi~n~~~~~~~~ 295 (817)
++|+|||-+.|++..+... ..+..-+ -||+|+....-++..+...++.++ ..++++.|+|+|++.. ..
T Consensus 115 ~yD~vIIDt~g~~~~~~~~-----~al~~aD-~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~--~~ 186 (267)
T cd02032 115 EYDVILFDVLGDVVCGGFA-----APLNYAD-YALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK--TD 186 (267)
T ss_pred cCCEEEEeCCCCcccccch-----hhhhhcC-EEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH--HH
Confidence 4999999997655433110 1112222 356677766555555444444433 3467789999999843 12
Q ss_pred HHHHhhcC-CCcEEe-cCCCCCCC
Q 003472 296 PLMSYLRN-RVPVLV-LPPLPQDS 317 (817)
Q Consensus 296 ~l~~~~~~-~~pvlg-iP~~~~~~ 317 (817)
.+++..+. +.|+++ ||+.+...
T Consensus 187 ~i~~~~~~~~~~vl~~Ip~~~~v~ 210 (267)
T cd02032 187 LIDKFVEAVGMPVLAVLPLIEDIR 210 (267)
T ss_pred HHHHHHHhCCCCEEEEecCCcccc
Confidence 23333222 899999 99876654
|
Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen. |
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.026 Score=63.76 Aligned_cols=207 Identities=16% Similarity=0.121 Sum_probs=123.1
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhcc-ccCCCCCC--ChHHHHHHHH-HHhhcCCCCcceEEEeCChHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENV--YEPALECAEL-LLQGVGKGWASRAYFSDNGSTAIE 475 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~-~~~~~~~~--~~~~~eLae~-L~~~~~~~~~~~v~f~~SGseA~E 475 (817)
-|||..+ .|=. +|+|.+|+......+. ......+. .....|.++. ++.+.+.. -.++.|+++++|||-
T Consensus 45 vyld~~a------t~p~-~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd-~~dIiFts~ATEs~N 116 (428)
T KOG1549|consen 45 VYLDNQA------TGPM-DPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINAD-PSDIVFTSGATESNN 116 (428)
T ss_pred EEEecCc------CCCC-CHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCC-CCcEEEeCCchHHHH
Confidence 6888554 4556 9999999998776643 22111111 2222444444 34455543 245999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccc
Q 003472 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (817)
Q Consensus 476 ~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (817)
.+++-.-|.+.. + .++.||.+ ..-|.+...+....- ..| +
T Consensus 117 lvl~~v~~~~~~--~--------------~~k~iitl-~~eH~~v~~s~~~l~--------------~~g--~------- 156 (428)
T KOG1549|consen 117 LVLKGVARFFGD--K--------------TKKHIITL-QTEHPCVLDSCRALQ--------------EEG--L------- 156 (428)
T ss_pred HHHHHhhccccc--c--------------ccceEEEe-cccCcchhHHHHHHH--------------hcC--e-------
Confidence 999977222221 1 12244444 444554333222110 001 0
Q ss_pred cCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003472 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (817)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~ 635 (817)
.+..+|.+... +.| .+.+++.|+ .++.+|++.-| ..+-|+
T Consensus 157 --~Vt~lpv~~~~-----------~~d------------------~~~~~~~i~--------~~T~lv~I~~V-nn~~gv 196 (428)
T KOG1549|consen 157 --EVTYLPVEDSG-----------LVD------------------ISKLREAIR--------SKTRLVSIMHV-NNEIGV 196 (428)
T ss_pred --EEEEeccCccc-----------ccc------------------HHHHHHhcC--------CCceEEEEEec-ccCccc
Confidence 11223332111 011 245566664 37789999998 899999
Q ss_pred ccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeec--ccccCCCCCcceEEEech
Q 003472 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATN 705 (817)
Q Consensus 636 ~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~LggGy~PlsAvl~s~ 705 (817)
..| +++|.++|+++|+.+..|=+| +. |+. -.+--.+.+|++++ =|.+|- =++|+.-+++
T Consensus 197 ~~P----v~EI~~icr~~~v~v~~DaAQ-av---G~i-~vDV~eln~D~~s~s~HK~ygp--~~iGaLYvr~ 257 (428)
T KOG1549|consen 197 LQP----VKEIVKICREEGVQVHVDAAQ-AV---GKI-PVDVQELNADFLSISAHKIYGP--PGIGALYVRR 257 (428)
T ss_pred ccc----HHHHHHHhCcCCcEEEeehhh-hc---CCc-cccHHHcCchheeeecccccCC--CcceEEEEcc
Confidence 999 999999999999999999999 44 331 12333457888755 476653 1278888886
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.016 Score=62.74 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=31.2
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
.++.+.++| -+|+||||+++-|+..+. ++|++|...-
T Consensus 71 ~~~vi~l~G-~~G~GKTTt~akLA~~l~-----~~g~~V~li~ 107 (272)
T TIGR00064 71 KPNVILFVG-VNGVGKTTTIAKLANKLK-----KQGKSVLLAA 107 (272)
T ss_pred CCeEEEEEC-CCCCcHHHHHHHHHHHHH-----hcCCEEEEEe
Confidence 457888888 699999999999999994 7788888764
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0063 Score=75.11 Aligned_cols=64 Identities=9% Similarity=-0.111 Sum_probs=46.2
Q ss_pred CCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC
Q 003472 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG 290 (817)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~ 290 (817)
+|+|||.+.....+ ....-++...+ -||+|+..+.-....+..+++.++..+.++.|||+|++.
T Consensus 656 yD~IiID~pp~~~~-----~d~~~l~~~~D-~vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~~ 719 (754)
T TIGR01005 656 SDCVVVDVGTADPV-----RDMRAAARLAI-IMLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNMLD 719 (754)
T ss_pred CCEEEEcCCCcchh-----HHHHHhhhhCC-eEEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCCC
Confidence 99999999553221 11222333333 356888877778888888999999888899999999973
|
The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. |
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.038 Score=66.89 Aligned_cols=163 Identities=17% Similarity=0.200 Sum_probs=94.9
Q ss_pred ChHHHHHHHHHHhhcCCCCcceEEEeCCh-HHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCc
Q 003472 442 YEPALECAELLLQGVGKGWASRAYFSDNG-STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (817)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~~~~v~f~~SG-seA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t 520 (817)
+.+..+..+..++.+| .++.+|..+| |.+|.+++..+ ..+.+.|.++...|=|.
T Consensus 194 ~G~i~eAe~~aA~~fg---Ad~tyfvvNGTS~~n~av~~a~----------------------~~~Gd~VLvdRN~HKSv 248 (713)
T PRK15399 194 TGPHLEAEEYIARTFG---AEQSYIVTNGTSTSNKIVGMYA----------------------APAGSTLLIDRNCHKSL 248 (713)
T ss_pred ChHHHHHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHh----------------------cCCCCEEEeecccHHHH
Confidence 4556666667777788 5788888777 45565555544 22346788999999999
Q ss_pred cccccccCCC-CCCCcCCCCCccCCccccCCCcccccCcceeecC-CchhhhcccccccccccCcchhhhhccCchhHHH
Q 003472 521 LGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (817)
Q Consensus 521 ~galslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~-P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~ 598 (817)
..++.++|.. .|-.+ -+..+|... ++ |.++ .
T Consensus 249 ~~aLilsga~PVYl~P----~~n~~Gi~g--------------~I~~~~~----------------------------~- 281 (713)
T PRK15399 249 AHLLMMSDVVPIWLKP----TRNALGILG--------------GIPRREF----------------------------T- 281 (713)
T ss_pred HHHHHHcCCeeEEecc----cccccCCcC--------------CCChhhc----------------------------c-
Confidence 9999998853 22211 001111110 00 1010 0
Q ss_pred HHHHHHHHHHhcCCCCCCCCc---EEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEE-Eeeeeeccccccccch
Q 003472 599 IYSSYISQNLLQNPGLKVSGC---IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI-FDEVFTGFWRLGVETT 674 (817)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~---iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI-~DEV~TGfGRtG~~~a 674 (817)
.+.+++.|++. ++. .++||.-|-. .|+..- ++.|.++| |+.+| |||++-|.-+....+-
T Consensus 282 --~e~I~~~i~~~-----p~~~~p~~vvit~pTY---dGi~yd----~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~ 344 (713)
T PRK15399 282 --RDSIEEKVAAT-----TQAQWPVHAVITNSTY---DGLLYN----TDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQ 344 (713)
T ss_pred --HHHHHHHHHhC-----CCcCCceEEEEECCCC---CceeeC----HHHHHHHh---CCCEEEEeccchhhhhcCcccC
Confidence 15677777752 221 4788888853 456554 66677777 78885 9999976555555322
Q ss_pred -hhh--cCCCCcee-----ecccccCC
Q 003472 675 -ADL--LGCVPDIA-----CYGKLLTG 693 (817)
Q Consensus 675 -~e~--~gv~PDiv-----tlgK~Lgg 693 (817)
..- .+-.+|.+ ..=|-|++
T Consensus 345 ~~sam~~~~~aD~~i~~tQStHKtL~a 371 (713)
T PRK15399 345 GKSGMSGERVPGKVIFETQSTHKMLAA 371 (713)
T ss_pred CcChhhCCCCCCeeeeeeeehhccccc
Confidence 111 11146876 33466654
|
|
| >PRK13232 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0053 Score=66.22 Aligned_cols=91 Identities=10% Similarity=0.050 Sum_probs=52.3
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHH---HHHHHHhCCCcEEEEEEccCCCCC---
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTIS---AYESLKLRGYDVVAVVFEDHGLVN--- 293 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~---~~~~l~~~~~~v~gvi~n~~~~~~--- 293 (817)
++|+|||-..|++... .....++..---.+|+|+....-++..+-. .++..+..+.++.|+|+|+.....
T Consensus 116 ~yD~vlID~~~~~~~~----~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~~~~~ 191 (273)
T PRK13232 116 DLDYVFYDVLGDVVCG----GFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRNVDGERE 191 (273)
T ss_pred cCCEEEEecCCCeeEC----CEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCCCCccHH
Confidence 4999999996543211 011111101112578888877666654443 444443456789999999863222
Q ss_pred -HHHHHHhhcCCCcEEe-cCCCCCC
Q 003472 294 -EVPLMSYLRNRVPVLV-LPPLPQD 316 (817)
Q Consensus 294 -~~~l~~~~~~~~pvlg-iP~~~~~ 316 (817)
.+.+++.+ +.++++ ||.....
T Consensus 192 ~~e~l~~~~--~~~vl~~Ip~~~~v 214 (273)
T PRK13232 192 LLEAFAKKL--GSQLIHFVPRDNIV 214 (273)
T ss_pred HHHHHHHHh--CCCeEEECCCCHHH
Confidence 23344555 778888 8876543
|
|
| >cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0074 Score=64.57 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
|++|-|.| -.||||||+|..|+.+|. ++|+||...=
T Consensus 1 m~~iav~~-KGGvGKTT~~~nLA~~La-----~~G~kVlliD 36 (270)
T cd02040 1 MRQIAIYG-KGGIGKSTTTQNLSAALA-----EMGKKVMIVG 36 (270)
T ss_pred CcEEEEEe-CCcCCHHHHHHHHHHHHH-----hCCCeEEEEE
Confidence 67888886 899999999999999994 7899998775
|
Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia. |
| >KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.01 Score=63.18 Aligned_cols=92 Identities=16% Similarity=0.129 Sum_probs=65.9
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC----------
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH---------- 289 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~---------- 289 (817)
.-|++||..-=|... ...+..+.++.- .=.|+|.....-++..+.-.+.+++..+++++|+|-|..
T Consensus 156 ~lDyLviDtPPGtsD---ehls~~~~~~~~-~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~ 231 (300)
T KOG3022|consen 156 ELDYLVIDTPPGTSD---EHLSLVQFLRES-DGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGVVENMSGFVCPKCGHS 231 (300)
T ss_pred CcCEEEEeCCCCCCh---hhhheeeccccc-CceEEEeCchhhhhHHHHhhhhhhhhcCCceEEEEeccccccCCCCCCc
Confidence 479999998433222 123334444432 126899999988899999999999999999999999974
Q ss_pred ----CCCCHHHHHHhhcCCCcEEe-cCCCCCCC
Q 003472 290 ----GLVNEVPLMSYLRNRVPVLV-LPPLPQDS 317 (817)
Q Consensus 290 ----~~~~~~~l~~~~~~~~pvlg-iP~~~~~~ 317 (817)
....-+.+.+.+ ++|+|| ||-.+.+.
T Consensus 232 ~~iF~~gGg~~l~~~~--glp~Lg~iPld~~i~ 262 (300)
T KOG3022|consen 232 TNIFGSGGGERLAEEL--GLPLLGSLPLDPLIA 262 (300)
T ss_pred ceeccCccHHHHHHHc--CCCeEeecCCCHHHH
Confidence 122346667777 999999 99776643
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0092 Score=67.24 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
..+.+.|.|. +|+||||+.+.|+..|. ++|++|+..-
T Consensus 240 ~~~vI~LVGp-tGvGKTTTiaKLA~~L~-----~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGP-TGVGKTTTLAKMAWQFH-----GKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECC-CCCcHHHHHHHHHHHHH-----HcCCcEEEEe
Confidence 3478999999 99999999999999984 7788998765
|
|
| >cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0053 Score=64.03 Aligned_cols=63 Identities=22% Similarity=0.045 Sum_probs=47.9
Q ss_pred CCEEEEeCCCCCCCCCCCCCchhhHhhhCC----CCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC
Q 003472 221 EILCIVETAGGVASPGPSGSLQCDLYRPFR----LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (817)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~~la~~l~----~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~ 289 (817)
+|+|||-+.- . .....+-+...+. .-+|+|+.....++.++...++.++..+.++.|+|+|++
T Consensus 114 yD~IIiD~pp-----~-~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~ 180 (217)
T cd02035 114 YDVIVFDTAP-----T-GHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRV 180 (217)
T ss_pred CCEEEECCCC-----c-hHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCC
Confidence 9999999832 2 1111122233333 248999999999999999999999999999999999987
|
This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence. |
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.045 Score=61.27 Aligned_cols=207 Identities=12% Similarity=0.128 Sum_probs=121.9
Q ss_pred CHHHHHHHHHHHHhccccCC--CCCCChHHHHHHHHHHhhcCCCC--cceEEEeCChHHHHHHHHHHHHHHhhccccccc
Q 003472 418 QIELARDMGYTAARFGHVMF--PENVYEPALECAELLLQGVGKGW--ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLV 493 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~~~~~--~~~~~~~~~eLae~L~~~~~~~~--~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~ 493 (817)
..-|.+|+++.+......+. ..+..+....|++++.++.+... .+.|+.++.+.+|.-.|+-... +
T Consensus 46 P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~----~------ 115 (420)
T KOG0257|consen 46 PKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLL----N------ 115 (420)
T ss_pred cHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHc----C------
Confidence 45567777777766432221 11334566778888888554311 3568888888888887776551 1
Q ss_pred cccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhccc
Q 003472 494 DFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (817)
Q Consensus 494 ~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~ 573 (817)
.-..||.++-.|-.-.....-+++.+.+... ... .+. +..+++
T Consensus 116 -----------~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~-----~~~-------------~g~--~~s~~~------ 158 (420)
T KOG0257|consen 116 -----------PGDEVIVFEPFFDCYIPQVVMAGGTPVFVPL-----KPK-------------EGN--VSSSDW------ 158 (420)
T ss_pred -----------CCCEEEEecCcchhhhhHHhhcCCcceeecc-----ccc-------------ccc--ccCccc------
Confidence 1237888888887654433333333222110 000 000 111111
Q ss_pred ccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhc
Q 003472 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (817)
Q Consensus 574 ~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~ 653 (817)
..| .+.+|..+.+ ..-+.||.-|= .--|-+. +.+-|++|.++|++|
T Consensus 159 ------~~D------------------~~~le~~~t~-------kTk~Ii~ntPh--NPtGkvf-sReeLe~ia~l~~k~ 204 (420)
T KOG0257|consen 159 ------TLD------------------PEELESKITE-------KTKAIILNTPH--NPTGKVF-SREELERIAELCKKH 204 (420)
T ss_pred ------cCC------------------hHHHHhhccC-------CccEEEEeCCC--CCcCccc-CHHHHHHHHHHHHHC
Confidence 112 1456666642 23356677773 4445555 788999999999999
Q ss_pred CCcEEEeeeeeccccccc---cchhhhcCCCCce-------eecccccCC-CCCcceEEEechHHHhhh
Q 003472 654 KIPVIFDEVFTGFWRLGV---ETTADLLGCVPDI-------ACYGKLLTG-GVIPLAATLATNAVFDSF 711 (817)
Q Consensus 654 GilLI~DEV~TGfGRtG~---~~a~e~~gv~PDi-------vtlgK~Lgg-Gy~PlsAvl~s~~i~d~~ 711 (817)
|+++|.|||.--+=-.|. .+++ + |++ -.+||.+|- | .-+|-+++.+.++...
T Consensus 205 ~~lvisDevYe~~v~d~~~h~r~as----l-Pgm~ertitvgS~gKtf~~TG-WrlGW~igp~~L~~~~ 267 (420)
T KOG0257|consen 205 GLLVISDEVYEWLVYDGNKHIRIAS----L-PGMYERTITVGSFGKTFGVTG-WRLGWAIGPKHLYSAL 267 (420)
T ss_pred CEEEEEhhHhHHHhhCCCcceeeec----C-CchhheEEEeccccceeeeee-eeeeeeechHHhhhhH
Confidence 999999999754322332 1221 2 554 367998885 7 7888899988887665
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.074 Score=60.20 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=49.7
Q ss_pred CCCEEEEeCCCCCCCCCCCCCch---hhHhhhCC-CCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC---
Q 003472 220 MEILCIVETAGGVASPGPSGSLQ---CDLYRPFR-LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV--- 292 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~---~~la~~l~-~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~--- 292 (817)
.+|++||.+||=+.. +..++ .++.+.++ ..+|||+|.-.|- .++.+.+.+.. .+.|-|||+.++.-+
T Consensus 182 ~~DvvIvDTAGRl~i---de~Lm~El~~Ik~~~~P~E~llVvDam~GQ--dA~~~A~aF~e-~l~itGvIlTKlDGdaRG 255 (451)
T COG0541 182 GYDVVIVDTAGRLHI---DEELMDELKEIKEVINPDETLLVVDAMIGQ--DAVNTAKAFNE-ALGITGVILTKLDGDARG 255 (451)
T ss_pred CCCEEEEeCCCcccc---cHHHHHHHHHHHhhcCCCeEEEEEecccch--HHHHHHHHHhh-hcCCceEEEEcccCCCcc
Confidence 489999999995433 22233 33333333 3489999966542 33334444543 478999999998322
Q ss_pred -CHHHHHHhhcCCCcEE
Q 003472 293 -NEVPLMSYLRNRVPVL 308 (817)
Q Consensus 293 -~~~~l~~~~~~~~pvl 308 (817)
..-.+...+ +.|+-
T Consensus 256 GaALS~~~~t--g~PIk 270 (451)
T COG0541 256 GAALSARAIT--GKPIK 270 (451)
T ss_pred hHHHhhHHHH--CCCeE
Confidence 233456677 77763
|
|
| >TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.016 Score=61.01 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=33.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
|+.|.|++.-.|+||||+|..|+.+|. ++|+||...=
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la-----~~g~~VlliD 37 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALK-----LLGEPVLAID 37 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHH-----hCCCcEEEEe
Confidence 678999999999999999999999994 7899998876
|
Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined. |
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.018 Score=70.32 Aligned_cols=153 Identities=12% Similarity=0.093 Sum_probs=88.4
Q ss_pred ChHHHHHHHHHHhhcCCCCcceEEEeCChHHH-HHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCc
Q 003472 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTA-IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (817)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA-~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t 520 (817)
..+..+..+..++.+| .++.+|..+||.+ |.+++..+ ..+.+.|.++...|=+.
T Consensus 204 ~G~I~eAq~~aA~~fg---A~~t~FlvNGST~gn~a~i~a~----------------------~~~gd~Vlv~RN~HKSv 258 (755)
T PRK15029 204 TGAFGESEKYAARVFG---ADRSWSVVVGTSGSNRTIMQAC----------------------MTDNDVVVVDRNCHKSI 258 (755)
T ss_pred CcHHHHHHHHHHHHhC---CCcEEEEeCChhHHHHHHHHHh----------------------cCCCCEEEeecccHHHH
Confidence 3455565566666787 4688887777655 44333333 22346778999999999
Q ss_pred cccccccCCC-CCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 521 LGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 521 ~galslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
+.++.++|.. .|-.+ -+...|. +.| ++.. +..
T Consensus 259 ~~al~L~ga~Pvyl~P----~~~~~Gi----------------~~~------------i~~~-------------~~~-- 291 (755)
T PRK15029 259 EQGLILTGAKPVYMVP----SRNRYGI----------------IGP------------IYPQ-------------EMQ-- 291 (755)
T ss_pred HHHHHHcCCeEEEecc----cccccCC----------------ccC------------CCcc-------------ccC--
Confidence 9999999853 22111 0001111 000 0000 000
Q ss_pred HHHHHHHHHhcCCCC---CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch
Q 003472 600 YSSYISQNLLQNPGL---KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~---~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a 674 (817)
.+.+++.|++.... .++.-.++||+-|-+ .|+..- ++.|.++|+++|++|++||+|-+..+.+..+.
T Consensus 292 -~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY---~Gv~~d----i~~I~~~~h~~~~~llvDEAhGah~~F~~~~p 361 (755)
T PRK15029 292 -PETLQKKISESPLTKDKAGQKPSYCVVTNCTY---DGVCYN----AKEAQDLLEKTSDRLHFDEAWYGYARFNPIYA 361 (755)
T ss_pred -HHHHHHHHHhCchhhhccccCceEEEEECCCC---cceeeC----HHHHHHHHHhcCCeEEEECccccccccCcccc
Confidence 14556666542100 111113677777853 455555 89999999999999999999976656666443
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.043 Score=62.91 Aligned_cols=85 Identities=19% Similarity=0.194 Sum_probs=49.8
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCC----CCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC---
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFR----LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV--- 292 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~----~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~--- 292 (817)
.+|+|||.+||.. +. +...+.++.+... ..++||.+...|-- .....+.+.. ...+.|+|+++...+
T Consensus 182 ~~DvViIDTaGr~--~~-d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~--a~~~a~~F~~-~~~~~g~IlTKlD~~arg 255 (429)
T TIGR01425 182 NFDIIIVDTSGRH--KQ-EDSLFEEMLQVAEAIQPDNIIFVMDGSIGQA--AEAQAKAFKD-SVDVGSVIITKLDGHAKG 255 (429)
T ss_pred CCCEEEEECCCCC--cc-hHHHHHHHHHHhhhcCCcEEEEEeccccChh--HHHHHHHHHh-ccCCcEEEEECccCCCCc
Confidence 4999999999942 22 2233344433322 24899999766521 1233344443 357899999998432
Q ss_pred -CHHHHHHhhcCCCcEEecCC
Q 003472 293 -NEVPLMSYLRNRVPVLVLPP 312 (817)
Q Consensus 293 -~~~~l~~~~~~~~pvlgiP~ 312 (817)
..-.+...+ ++|+..+..
T Consensus 256 G~aLs~~~~t--~~PI~fig~ 274 (429)
T TIGR01425 256 GGALSAVAAT--KSPIIFIGT 274 (429)
T ss_pred cHHhhhHHHH--CCCeEEEcC
Confidence 223344555 888866544
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.066 Score=60.29 Aligned_cols=121 Identities=13% Similarity=0.132 Sum_probs=70.4
Q ss_pred cCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeec--ccccCC--CCCcceEEEechH
Q 003472 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTG--GVIPLAATLATNA 706 (817)
Q Consensus 631 g~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~Lgg--Gy~PlsAvl~s~~ 706 (817)
...|++.| ++ ++++++|+++|+|=||+ +|- ...-.+ .-|++++ -|.+|+ | ++.+.++++
T Consensus 139 t~tG~~~p----i~---~I~~~~g~~~iVDavqs-~g~--~~idv~----~~D~~~~s~~K~lg~~~G---l~~~~~s~~ 201 (361)
T TIGR01366 139 TSTGVAVP----VR---RPEGSDDALVVIDATSG-AGG--LPVDIA----ETDVYYFAPQKNFASDGG---LWLAIMSPA 201 (361)
T ss_pred Cccceecc----cc---cccccCCCeEEEEcCcc-ccC--CCCCHH----HCCEEEEEchhhcCCCCc---eEEEEECHH
Confidence 33567766 33 34789999999999996 321 111112 1488866 488874 3 455667888
Q ss_pred HHhhhcCCCcc---ce-e----------ecccCCCCCHHH-HHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHH
Q 003472 707 VFDSFVGDSKL---KA-L----------LHGHSYSAHALG-CAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELI 768 (817)
Q Consensus 707 i~d~~~~~~~~---~~-~----------~h~~T~~gnPla-~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~ 768 (817)
..+.+...... .+ + .-+.|+...++. +.+..++|+++++++-.++..++.+.+.+++.+.+.
T Consensus 202 ~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~ 278 (361)
T TIGR01366 202 ALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQ 278 (361)
T ss_pred HHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 87665421000 00 0 012444444444 446778999997763346666777777776655443
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.061 Score=53.67 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=26.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 40 ~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+.++|. +|+|||+++..|+..+. ++|.+|.++-
T Consensus 3 ~~~~G~-~G~GKTt~~~~la~~~~-----~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGL-QGVGKTTTAAKLALYLK-----KKGKKVLLVA 35 (173)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 455555 89999999999999984 6688888776
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.059 Score=59.70 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
....+.+.| -+|+||||+++.|+..+. .+|++|...-
T Consensus 113 ~~~vi~lvG-pnGsGKTTt~~kLA~~l~-----~~g~~V~Li~ 149 (318)
T PRK10416 113 KPFVILVVG-VNGVGKTTTIGKLAHKYK-----AQGKKVLLAA 149 (318)
T ss_pred CCeEEEEEC-CCCCcHHHHHHHHHHHHH-----hcCCeEEEEe
Confidence 356888999 589999999999999994 6688887754
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.015 Score=56.31 Aligned_cols=84 Identities=15% Similarity=0.140 Sum_probs=54.0
Q ss_pred CCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhC-CCcEEEEEEccCCCCC-HHHHH
Q 003472 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLR-GYDVVAVVFEDHGLVN-EVPLM 298 (817)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~-~~~v~gvi~n~~~~~~-~~~l~ 298 (817)
+|++||.+.+++ +.....+++..+. +|+|+....-++..+...++.+... +..-.++|+|++.... .+.+.
T Consensus 45 yd~VIiD~p~~~------~~~~~~~l~~aD~-vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~~~~~~~~ 117 (139)
T cd02038 45 YDYIIIDTGAGI------SDNVLDFFLAADE-VIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPKEGKKVF 117 (139)
T ss_pred CCEEEEECCCCC------CHHHHHHHHhCCe-EEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCHHHHHHHH
Confidence 578899986543 2233455666653 7788888888888878877777643 3456789999984322 22222
Q ss_pred H--------hhcCCCcEEe-cC
Q 003472 299 S--------YLRNRVPVLV-LP 311 (817)
Q Consensus 299 ~--------~~~~~~pvlg-iP 311 (817)
+ +...++|++| ||
T Consensus 118 ~~~~~~~~r~~~~~l~~~~~~~ 139 (139)
T cd02038 118 KRLSNVSNRFLGLSLDYLGFIP 139 (139)
T ss_pred HHHHHHHHHHhCCChhhceecC
Confidence 2 2222789999 87
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.12 Score=58.23 Aligned_cols=276 Identities=13% Similarity=0.016 Sum_probs=163.4
Q ss_pred hHHHHHHHHHHhhcCCCCcceEEE-eCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCcc
Q 003472 443 EPALECAELLLQGVGKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (817)
Q Consensus 443 ~~~~eLae~L~~~~~~~~~~~v~f-~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~ 521 (817)
+...+|.+.|+++.| ++.|.+ -|+|+..=-+.|-+. |+|+..+|. ...+++....|-||.--
T Consensus 109 ~li~~Lq~~L~~ITG---~DavsLQP~AGAqGE~aGll~I-r~YHe~rG~-------------~~R~~~LIP~SAHGTNP 171 (496)
T COG1003 109 ELIYELQEWLKEITG---MDAVSLQPNAGAQGEYAGLLAI-RAYHESRGE-------------GHRNICLIPDSAHGTNP 171 (496)
T ss_pred HHHHHHHHHHHHhcC---CceeeccCCCCcchhhHHHHHH-HHHHHHcCC-------------CcCcEEEeeccccCCCh
Confidence 445689999999998 667665 789999988888888 888877764 24577788899999765
Q ss_pred ccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHH
Q 003472 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (817)
Q Consensus 522 galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~ 601 (817)
.+.++.|-. .|..+..-. .+. + +
T Consensus 172 ASAam~G~~------------------------------VV~V~~~~~-----------G~V-----------D-----l 194 (496)
T COG1003 172 ASAAMAGFK------------------------------VVVVKCDEN-----------GNV-----------D-----L 194 (496)
T ss_pred hhHhhcCce------------------------------EEEEecCCC-----------CCc-----------c-----H
Confidence 555554321 111111000 000 0 2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEE-EccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeee----eeccccccccch-h
Q 003472 602 SYISQNLLQNPGLKVSGCIGALI-IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV----FTGFWRLGVETT-A 675 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvI-vEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV----~TGfGRtG~~~a-~ 675 (817)
+.|+..++ +++||+. .-| +.-|+. ++-.+++.++.+++|..|..|=+ +-|.-|-|.+++ .
T Consensus 195 ddLk~k~~--------~~~AalMiTnP---sT~GvF---E~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~DV 260 (496)
T COG1003 195 DDLRAKAE--------DNLAALMITNP---STLGVF---EEDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGFDV 260 (496)
T ss_pred HHHHHHhc--------cceeEEEeccC---cccccc---hhhHHHHHHHHHHcCCEEEecCcchhhhhccccccccccce
Confidence 45555443 5666654 455 334443 34477888888999999999976 557767777543 2
Q ss_pred hhcCCCCceeecccccCCCCCc-ceEEEechHHHhhhcC----CCcc---------ceeecccCCCCCHHHHHHHHHHHH
Q 003472 676 DLLGCVPDIACYGKLLTGGVIP-LAATLATNAVFDSFVG----DSKL---------KALLHGHSYSAHALGCAAAAKSIK 741 (817)
Q Consensus 676 e~~gv~PDivtlgK~LggGy~P-lsAvl~s~~i~d~~~~----~~~~---------~~~~h~~T~~gnPla~AAAlA~L~ 741 (817)
.|+++.- ||+-.=||| -| .|-|.+++.+..++.. .... ....-..+|-||..-...+.+-+.
T Consensus 261 ~HlNLHK---TF~iPHGGG-GPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI~ 336 (496)
T COG1003 261 VHLNLHK---TFCIPHGGG-GPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASILPIAWAYIR 336 (496)
T ss_pred EEeeccc---ccccCCCCC-CCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcchHHHHHHHHHH
Confidence 3444321 444444554 23 3456677887777654 1110 122346688899999999999998
Q ss_pred HhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCC---CCCcchHHHHHHHHHHcCCCC
Q 003472 742 WFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC---NAGYCLIELFLYNFLTTGMHP 817 (817)
Q Consensus 742 ~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~---~~~~~~~~~~~~~~l~~Gv~~ 817 (817)
.|-.+++. .+-+.+-.-..|+.++|.. .+++.- .|.+ ..+-|++-+.. ...-....-+.+++++.|+||
T Consensus 337 ~mG~~GL~-~ase~AvLNANYia~rL~~---~y~~~y--~~~~-~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~GfHa 408 (496)
T COG1003 337 MMGADGLK-QASEVAVLNANYIARRLKG---YYPVPY--TGEN-RVAHECILDARPLKKETGVRALDVAKRLLDYGFHA 408 (496)
T ss_pred HHhHHHHH-HHHHHHHHhHHHHHHHhhh---cCcccc--CCCC-cceeEEEeechHhHhhcCCcHHHHHHHHHhcCCCC
Confidence 88664442 2223332333444333321 444421 2222 44555544420 011156777899999999996
|
|
| >PHA02518 ParA-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.036 Score=56.81 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=31.5
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 38 ~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+.|-|++.-.||||||+|..|..+|. ++|++|...-
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la-----~~g~~vlliD 36 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLH-----ADGHKVLLVD 36 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHH-----hCCCeEEEEe
Confidence 46789999999999999999999994 7899987765
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.021 Score=63.10 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee
Q 003472 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664 (817)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T 664 (817)
++.+|.++++ .++|.||+-|- .-.| .+ .+..-|++|.++|+++|+++|.|||..
T Consensus 189 L~~veal~DE-------NT~AivviNP~-NPcG-nV-ys~~HL~kiae~A~klgi~vIaDEVY~ 242 (447)
T KOG0259|consen 189 LDGVEALADE-------NTVAIVVINPN-NPCG-NV-YSEDHLKKIAETAKKLGIMVIADEVYG 242 (447)
T ss_pred hHHHHHhhcc-------CeeEEEEeCCC-CCCc-cc-ccHHHHHHHHHHHHHhCCeEEehhhcc
Confidence 3667777663 57899999995 4444 33 389999999999999999999999973
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.022 Score=63.38 Aligned_cols=36 Identities=17% Similarity=0.027 Sum_probs=29.9
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
...++++| -+|+||||+++.|+..|. .+|++|+..-
T Consensus 140 ~~vi~~~G-~~GvGKTTtiakLA~~l~-----~~g~~V~li~ 175 (336)
T PRK14974 140 PVVIVFVG-VNGTGKTTTIAKLAYYLK-----KNGFSVVIAA 175 (336)
T ss_pred CeEEEEEc-CCCCCHHHHHHHHHHHHH-----HcCCeEEEec
Confidence 46788888 599999999999999994 6788887743
|
|
| >PRK13230 nitrogenase reductase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.021 Score=61.82 Aligned_cols=36 Identities=14% Similarity=0.347 Sum_probs=32.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
|++|.|.| -.||||||+|..|+.+|. ++|+||..+=
T Consensus 1 ~~~i~~~g-KGGVGKTT~a~nLA~~La-----~~G~rVLliD 36 (279)
T PRK13230 1 MRKFCFYG-KGGIGKSTTVCNIAAALA-----ESGKKVLVVG 36 (279)
T ss_pred CcEEEEEC-CCCCcHHHHHHHHHHHHH-----hCCCEEEEEe
Confidence 68899998 899999999999999995 8899998774
|
|
| >TIGR01287 nifH nitrogenase iron protein | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.026 Score=60.90 Aligned_cols=35 Identities=14% Similarity=0.362 Sum_probs=30.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 38 ~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+.|.|.| -.||||||+|..|+.+|. ++|+||..+=
T Consensus 1 ~~ia~~g-KGGVGKTT~a~nLA~~La-----~~G~~VlliD 35 (275)
T TIGR01287 1 RQIAIYG-KGGIGKSTTTQNIAAALA-----EMGKKVMIVG 35 (275)
T ss_pred CeeEEeC-CCcCcHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 3578888 899999999999999995 7899998864
|
This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase. |
| >PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0044 Score=70.44 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=34.1
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (817)
|+.|-|+|- +|+||||+...|+..|+ ++|++|+..|=
T Consensus 1 MkVi~IvG~-sgSGKTTLiekLI~~L~-----~rG~rVavIKH 37 (452)
T PRK14495 1 MRVYGIIGW-KDAGKTGLVERLVAAIA-----ARGFSVSTVKH 37 (452)
T ss_pred CcEEEEEec-CCCCHHHHHHHHHHHHH-----hCCCeEEEEec
Confidence 678999998 69999999999999994 89999999994
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.053 Score=61.41 Aligned_cols=122 Identities=11% Similarity=0.095 Sum_probs=73.8
Q ss_pred CCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeec--ccccCCCCCcceEEEechHHHh
Q 003472 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFD 709 (817)
Q Consensus 632 ~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~LggGy~PlsAvl~s~~i~d 709 (817)
..|.+.| +++|.+ +++|+++|+|=+|+ +|-. -+-.+. -|++++ -|.|++- .=+|.+.++++..+
T Consensus 148 ~tG~~~p----i~~I~~--~~~g~~~vVDa~qs-~G~~--pidv~~----iD~~~~s~~K~l~~P-~G~g~l~v~~~~~~ 213 (378)
T PRK03080 148 TTGVRVP----VARWIG--ADREGLTICDATSA-AFAL--PLDWSK----LDVYTFSWQKVLGGE-GGHGMAILSPRAVE 213 (378)
T ss_pred ccceecc----chhhcc--ccCCCeEEEecccc-cccC--CCCHHH----CcEEEEehhhhCCCC-CceEEEEECHHHHH
Confidence 3578887 777777 78999999999995 4321 121221 388855 5888762 11688999999887
Q ss_pred hhcCCCc------cc---------e-eecccCCCC-CHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHH
Q 003472 710 SFVGDSK------LK---------A-LLHGHSYSA-HALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (817)
Q Consensus 710 ~~~~~~~------~~---------~-~~h~~T~~g-nPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l 767 (817)
.+..... .. . ..-..|+.- +-.+..+..++|+.+.+.+-.+++.++.+.+.+++.+.+
T Consensus 214 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l 288 (378)
T PRK03080 214 RLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWA 288 (378)
T ss_pred hhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 6542100 00 0 011223322 334455558899999775234666777777777665543
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.087 Score=59.20 Aligned_cols=95 Identities=18% Similarity=0.294 Sum_probs=68.0
Q ss_pred HHHHHHHHhhcCCcEEEeeeeeccccccccchh-hhcCCCCceeecc--cccCCCCCcceEEEechHHHhhhcCCCccce
Q 003472 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLKA 719 (817)
Q Consensus 643 l~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~-e~~gv~PDivtlg--K~LggGy~PlsAvl~s~~i~d~~~~~~~~~~ 719 (817)
++++.++|+++|+++|+|-.- |. +.-+.... +.+..-+|+|++| |.|||= --|-+++++++++.+....
T Consensus 176 ~~~l~~ia~~~~lpvivD~aS-g~-~v~~e~~l~~~la~GaDLV~~SgdKllgGP--qaGii~GkKelI~~lq~~~---- 247 (395)
T COG1921 176 EEELVEIAHEKGLPVIVDLAS-GA-LVDKEPDLREALALGADLVSFSGDKLLGGP--QAGIIVGKKELIEKLQSHP---- 247 (395)
T ss_pred HHHHHHHHHHcCCCEEEecCC-cc-ccccccchhHHHhcCCCEEEEecchhcCCC--ccceEechHHHHHHHHhhh----
Confidence 788999999999999999876 43 32232222 3344568999884 778761 1234899999998886542
Q ss_pred eecccCCCCCHHHHHHHHHHHHHhcCcC
Q 003472 720 LLHGHSYSAHALGCAAAAKSIKWFKDPQ 747 (817)
Q Consensus 720 ~~h~~T~~gnPla~AAAlA~L~~l~~~~ 747 (817)
.+.-.--.+...|+-.++|+.+..++
T Consensus 248 --l~Ralrv~K~tla~l~~aLe~y~~~~ 273 (395)
T COG1921 248 --LKRALRVDKETLAALEAALELYLQPE 273 (395)
T ss_pred --hhhhhhcCcHhHHHHHHHHHHHcCch
Confidence 33445567899999999999997743
|
|
| >PRK10818 cell division inhibitor MinD; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.08 Score=56.81 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=33.2
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
++.|-|++.-.||||||+|+.|+.+|. ++|++|...=
T Consensus 2 ~kviav~s~KGGvGKTt~a~nlA~~la-----~~g~~vllvD 38 (270)
T PRK10818 2 ARIIVVTSGKGGVGKTTSSAAIATGLA-----QKGKKTVVID 38 (270)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 588999999999999999999999994 7799988765
|
|
| >TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.005 Score=60.98 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=32.6
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccC
Q 003472 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTG 83 (817)
Q Consensus 40 ~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g 83 (817)
+.|+|. +|+||||++..|++.|+ ++|++|+++|+...+
T Consensus 2 i~i~G~-~gsGKTtl~~~l~~~l~-----~~G~~V~viK~~~~~ 39 (155)
T TIGR00176 2 LQIVGP-KNSGKTTLIERLVKALK-----ARGYRVATIKHDHHD 39 (155)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHH-----hcCCeEEEEeccccc
Confidence 567887 69999999999999994 779999999986544
|
This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes. |
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.33 Score=57.55 Aligned_cols=97 Identities=9% Similarity=-0.084 Sum_probs=60.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC-
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv- 680 (817)
+.|++.|++.. +.+....+|+.-- ....-|.+-| +++|.++|++||+.|=+|=+..|+...-...-.-..|+
T Consensus 272 ~~L~~~I~~d~--~~g~~P~~VvaTa-GTT~tGaiDp----l~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie 344 (539)
T PLN02590 272 ESLEEAISHDL--AKGFIPFFICATV-GTTSSAAVDP----LVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIE 344 (539)
T ss_pred HHHHHHHHHHH--hcCCCcEEEEEEe-CCCCCcccCC----HHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCc
Confidence 44555554310 1123344444443 2445577777 99999999999999999988877643322222222365
Q ss_pred CCceeec--ccccCCCCCcceEEEechH
Q 003472 681 VPDIACY--GKLLTGGVIPLAATLATNA 706 (817)
Q Consensus 681 ~PDivtl--gK~LggGy~PlsAvl~s~~ 706 (817)
..|=+++ -|-|.-. ++.|+++++..
T Consensus 345 ~ADSit~D~HK~l~~p-~~cg~llvr~~ 371 (539)
T PLN02590 345 NADSFNMNAHKWLFAN-QTCSPLWVKDR 371 (539)
T ss_pred cCCEEEECchhhcCcC-cCEEEEEecCH
Confidence 3676654 6777666 68888998864
|
|
| >cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.014 Score=58.18 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=35.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccC
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTG 83 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g 83 (817)
|+.+.|+|. +|+|||+++..|++.|. ++|++|+.+|.-..+
T Consensus 1 m~vi~i~G~-~gsGKTTli~~L~~~l~-----~~g~~V~~iK~~~~~ 41 (159)
T cd03116 1 MKVIGFVGY-SGSGKTTLLEKLIPALS-----ARGLRVAVIKHDHHD 41 (159)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCcEEEEEecCCc
Confidence 678999999 59999999999999994 789999999965443
|
In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin. |
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.13 Score=57.67 Aligned_cols=164 Identities=11% Similarity=0.091 Sum_probs=95.6
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeec--ccccCCCC
Q 003472 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGV 695 (817)
Q Consensus 618 ~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~LggGy 695 (817)
.-|+.+-.|.. .|+..+ ++++.+|+++|+|=||+ +|- .-.-.+.+ |++++ -|.+|
T Consensus 132 ~~v~~th~ETs----tGv~~~---------~l~~~~~~l~iVDavss-~g~--~~id~~~~----d~~~~ssqK~lg--- 188 (349)
T TIGR01364 132 AYVHYCANETI----HGVEFR---------ELPDVKNAPLVADMSSN-ILS--RPIDVSKF----GLIYAGAQKNIG--- 188 (349)
T ss_pred CEEEEcCCCCc----ccEecc---------eecccCCCeEEEEcccc-ccC--ccCCHHHc----cEEEEecccccC---
Confidence 34666666664 355442 77888999999999996 321 12222222 46654 48884
Q ss_pred Cc-ceEEEechHHHhhhcCCCc-ccee----ecccCC-CCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHH
Q 003472 696 IP-LAATLATNAVFDSFVGDSK-LKAL----LHGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELI 768 (817)
Q Consensus 696 ~P-lsAvl~s~~i~d~~~~~~~-~~~~----~h~~T~-~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~ 768 (817)
-| +|.+.++++..+.+..... ...+ ....++ +-|-....+..++|+++.+++-.+++.++.+.+.+++.+.+.
T Consensus 189 P~Glg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~ 268 (349)
T TIGR01364 189 PAGLTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTID 268 (349)
T ss_pred CCceEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 35 8899999999876643211 0000 012334 334555666668999998763257777878888877665443
Q ss_pred HHHHcCC-C--c-c--eEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCC
Q 003472 769 QQISSHR-T--V-Q--RVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGM 815 (817)
Q Consensus 769 ~~l~~~p-~--V-~--~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv 815 (817)
+.+ + . . +.|. ....+|.+.+. .....++..+.++|+
T Consensus 269 ----~~~gl~~~~~~~~~rs-~~v~sf~~~~~------~~~~~~~~~~~~~Gi 310 (349)
T TIGR01364 269 ----NSNGFYRNPVDPRNRS-RMNVVFTLGNE------ELEKRFLKEAEERGL 310 (349)
T ss_pred ----hCCCeeccCCCHHHcC-CeEEEEecCCh------hHhHHHHHHHHHCCC
Confidence 333 1 1 1 1232 35566665433 123566677777875
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK13231 nitrogenase reductase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.031 Score=59.86 Aligned_cols=94 Identities=11% Similarity=0.070 Sum_probs=53.8
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC-CHHHHH
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV-NEVPLM 298 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~-~~~~l~ 298 (817)
++|+|||-+.|++.... .. ..++...---+|+|+....-++..+-..++.++.-+..+.|+|.|..... ..+.++
T Consensus 113 ~yD~ViIDt~~~~~~~~---~~-~~~~~~aaD~vlip~~p~~~si~~~~~~~~~i~~~~~~~~~vv~~~~~~~~~~~~~~ 188 (264)
T PRK13231 113 DIDVVIYDVLGDVVCGG---FS-VPLREDYADEVYIVTSGEYMSLYAANNIARGIKKLKGKLGGIICNCRGIDNEVEIVS 188 (264)
T ss_pred CCCEEEEecCCCceEcc---cc-ccccccccceeEEEecCchhHHHHHHHHHHHHHHcCCcceEEEEcCCCCccHHHHHH
Confidence 49999999966432110 00 00000111257777888777777777777777654445778888876322 223333
Q ss_pred HhhcC-CCcEEe-cCCCCCCC
Q 003472 299 SYLRN-RVPVLV-LPPLPQDS 317 (817)
Q Consensus 299 ~~~~~-~~pvlg-iP~~~~~~ 317 (817)
+..+. +.++++ ||......
T Consensus 189 ~l~~~~~~~vl~~I~~~~~v~ 209 (264)
T PRK13231 189 EFASRIGSRIIGVIPRSNLVQ 209 (264)
T ss_pred HHHHHhCCCeEEeCCCCHHHH
Confidence 32222 788888 88765543
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.057 Score=60.77 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=30.5
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
..+.++|+|. +||||||+++.|+..+. ++|++|.++-
T Consensus 205 ~~~ii~lvGp-tGvGKTTt~akLA~~l~-----~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQ-TGVGKTTTLVKLGWQLL-----KQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 3578889997 69999999999999884 6788888754
|
|
| >PRK13233 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.035 Score=59.90 Aligned_cols=36 Identities=14% Similarity=0.258 Sum_probs=30.6
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCC-CCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSS-ANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~-~g~~v~~~K 78 (817)
++.|-|+ --.||||||+|.-|+.+|. + +|+||..+=
T Consensus 2 ~~vIav~-~KGGVGKTT~a~nLA~~La-----~~~G~rvLliD 38 (275)
T PRK13233 2 TRKIAIY-GKGGIGKSTTTQNTAAAMA-----YFHDKKVFIHG 38 (275)
T ss_pred ceEEEEE-cCCCCcHHHHHHHHHHHHH-----HhcCCeEEEec
Confidence 4778888 4899999999999999994 4 599998764
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.03 Score=64.42 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=30.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
.+.+++.|. +||||||+++.|+..+.+ . +.|++|.++.
T Consensus 221 ~~~i~~vGp-tGvGKTTt~~kLA~~~~~--~-~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGP-TGVGKTTTLAKLAARYAL--L-YGKKKVALIT 258 (424)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHHH--h-cCCCeEEEEE
Confidence 468889999 899999999999988730 1 4578999886
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.12 Score=56.09 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=41.0
Q ss_pred CCchh---HHHHHHHHhccccCCCCCCCcCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 8 HYPDH---HRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 8 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+.|+| -+.+|.++.-|. + +...|=|||+ .|+||||+.-.|.+.|. ++|+||+..-
T Consensus 29 ~~~~h~~~a~~ll~~l~p~t-G---------~a~viGITG~-PGaGKSTli~~L~~~l~-----~~G~rVaVlA 86 (323)
T COG1703 29 RRPDHRALARELLRALYPRT-G---------NAHVIGITGV-PGAGKSTLIEALGRELR-----ERGHRVAVLA 86 (323)
T ss_pred CCchhhhHHHHHHHHHhhcC-C---------CCcEEEecCC-CCCchHHHHHHHHHHHH-----HCCcEEEEEE
Confidence 45555 445666665442 2 2348899998 89999999999999994 8999988775
|
|
| >PRK13236 nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.039 Score=60.41 Aligned_cols=37 Identities=8% Similarity=0.232 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+|+.+-|.| -.|||||++++-|+.+|. ++|+||..+=
T Consensus 5 ~~~~~~~~G-KGGVGKTt~a~NLA~~La-----~~G~rVLliD 41 (296)
T PRK13236 5 NIRQIAFYG-KGGIGKSTTSQNTLAAMA-----EMGQRILIVG 41 (296)
T ss_pred CceEEEEEC-CCcCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 567888888 789999999999999995 7899999885
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.085 Score=61.75 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=29.8
Q ss_pred CCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 35 ~~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
...+.+.|+|. +|+||||++..|+..+.. + ..|++|.++-
T Consensus 348 ~~G~vIaLVGP-tGvGKTTtaakLAa~la~--~-~~gkkVaLId 387 (559)
T PRK12727 348 ERGGVIALVGP-TGAGKTTTIAKLAQRFAA--Q-HAPRDVALVT 387 (559)
T ss_pred cCCCEEEEECC-CCCCHHHHHHHHHHHHHH--h-cCCCceEEEe
Confidence 45678889997 699999999999988741 1 1256777664
|
|
| >PRK13849 putative crown gall tumor protein VirC1; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.091 Score=55.53 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=33.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
|+.|.|++.-.||||||++..|+.+|. ++|++|..+-
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la-----~~G~~VlliD 37 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALA-----SDGKRVALFE 37 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHH-----hCCCcEEEEe
Confidence 678999999999999999999999994 8899998776
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.19 Score=58.49 Aligned_cols=69 Identities=17% Similarity=0.044 Sum_probs=45.7
Q ss_pred CCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchh--h-hcCC-CCceeec-ccccCCCCCcceEEEechH
Q 003472 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA--D-LLGC-VPDIACY-GKLLTGGVIPLAATLATNA 706 (817)
Q Consensus 632 ~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~--e-~~gv-~PDivtl-gK~LggGy~PlsAvl~s~~ 706 (817)
.-|.+-| +++|.++|++||+.+-+|=...||=. .+.-. . .+++ ..|-+|+ +-.+|.-.+|.|+++.+++
T Consensus 219 ~~G~iDd----i~~ia~ia~~~~i~lHVDAA~GG~~~--pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~ 292 (460)
T COG0076 219 DTGSIDD----IEELADIAEEYGIWLHVDAAFGGFLL--PFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDE 292 (460)
T ss_pred CCCccCC----HHHHHHHHHHcCCcEEEEccccceee--cccCccchhhcCCCCceEEEECcccccCCCCCceEEEEECH
Confidence 3455555 99999999999999999999987622 11111 1 1344 3455544 3455555577888999887
|
|
| >PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.016 Score=62.67 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=32.8
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (817)
|+.|.|+|. +|+||||++..|++.|. ++| +|++.|=
T Consensus 1 M~~i~i~G~-~gSGKTTLi~~Li~~L~-----~~G-~V~~IKh 36 (274)
T PRK14493 1 MKVLSIVGY-KATGKTTLVERLVDRLS-----GRG-RVGTVKH 36 (274)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHH-----hCC-CEEEEEE
Confidence 678999999 59999999999999994 789 8999994
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.16 Score=57.01 Aligned_cols=153 Identities=14% Similarity=0.114 Sum_probs=84.2
Q ss_pred HHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCCCCc-ceEEEechHHHhhhcCCCc-cc--e--ee
Q 003472 648 KECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIP-LAATLATNAVFDSFVGDSK-LK--A--LL 721 (817)
Q Consensus 648 ~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggGy~P-lsAvl~s~~i~d~~~~~~~-~~--~--~~ 721 (817)
++++.||+++++|=+|+ +|-. -.-.+.+++ ++..--|.+ | .| +|.+.+++++.+.+..... .. . ..
T Consensus 157 ~i~~~~g~~~~VDa~qs-~g~~--~idv~~~~~--~~ss~~K~l--G-P~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (355)
T cd00611 157 EVPDTGGVPLVADMSSN-ILSR--PIDVSKFGV--IYAGAQKNL--G-PAGVTVVIVRKDLLGKARKITPSMLNYKTHAD 228 (355)
T ss_pred eecccCCCeEEEEcccc-ccCC--CCCHHHhCE--EEeeccccc--C-CCceEEEEECHHHHhhcccCCCCcccHHHHHh
Confidence 56677999999999997 3221 222233332 222234766 3 34 7889999998876542110 00 0 00
Q ss_pred cccCC-CCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC-CCcc--eEEeeeeEEEEEEecCCCC
Q 003472 722 HGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH-RTVQ--RVVALGTLCAIELQAAGCN 797 (817)
Q Consensus 722 h~~T~-~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~-p~V~--~VrG~Glm~gIel~~~~~~ 797 (817)
...++ +-|-.+..+..++|+++++++-.+++.++.+.+.+++.+.+.++ ... ..+. ..|. +..++|.+...
T Consensus 229 ~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~-~gl~~~~~~~~~rs-~~vvsf~~~~~--- 303 (355)
T cd00611 229 NNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNS-NGFYRGPVDKRARS-RMNVPFRLGKE--- 303 (355)
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC-ccccccCCCHHHcC-ceEEEEEcCCh---
Confidence 11123 33455677777899999876224777777788888776654432 111 0111 1222 35566665432
Q ss_pred CCcchHHHHHHHHHHcCCC
Q 003472 798 AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 798 ~~~~~~~~~~~~~l~~Gv~ 816 (817)
.....++..+.++|++
T Consensus 304 ---~l~~~~~~~~~r~G~~ 319 (355)
T cd00611 304 ---ELEKEFLKEAEAAGMI 319 (355)
T ss_pred ---hhhHHHHHHHHHCCCc
Confidence 2224555677778875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.14 Score=57.67 Aligned_cols=165 Identities=10% Similarity=0.063 Sum_probs=94.2
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeec--ccccCCCC
Q 003472 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGV 695 (817)
Q Consensus 618 ~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~LggGy 695 (817)
.-|+.+-.|.. .|+..++ +++ + +|+++|+|=||+ +| +.-.-.+.+ |++++ -|.+|
T Consensus 143 ~~V~~th~eTs----tGv~~~~---i~~---i---~g~l~vVDavss-~g--~~~idv~~~----d~~~~ssqK~lg--- 199 (360)
T PRK05355 143 AYVHYTSNETI----DGTEFHE---LPD---T---GDVPLVADMSSD-IL--SRPIDVSKF----GLIYAGAQKNIG--- 199 (360)
T ss_pred CEEEEccCCCc----ceEecCc---ccc---c---CCCcEEEEcCcc-cc--CccCCHHHc----cEEEEecccccc---
Confidence 34555556654 4666532 333 3 899999999996 42 222222222 57655 48874
Q ss_pred Cc-ceEEEechHHHhhhcCCCc-cce----eecccC-CCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHH
Q 003472 696 IP-LAATLATNAVFDSFVGDSK-LKA----LLHGHS-YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELI 768 (817)
Q Consensus 696 ~P-lsAvl~s~~i~d~~~~~~~-~~~----~~h~~T-~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~ 768 (817)
-| +|.+.++++..+.+..... ... .....| ++-|-....+..++|+++.+++-.+++.++.+.+.+++.+.+
T Consensus 200 P~Glg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l- 278 (360)
T PRK05355 200 PAGLTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAI- 278 (360)
T ss_pred CCceEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH-
Confidence 34 7889999999877643100 000 001122 234556666677899999876224677777777777666543
Q ss_pred HHHHcCCCcc-----eEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 769 QQISSHRTVQ-----RVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 769 ~~l~~~p~V~-----~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++.+.+. ..| .+....|.+... .....++..+.++|++
T Consensus 279 ---~~~~~~~~~~~~~~r-s~~v~sf~~~~~------~~~~~~~~~~~~~Gi~ 321 (360)
T PRK05355 279 ---DSSDFYRNPVAPEDR-SRMNVPFTLADE------ELDKKFLAEAKAAGLV 321 (360)
T ss_pred ---HhCCCcccCCChhhc-CCcEEEEEcCCh------HHHHHHHHHHHHCCCc
Confidence 3334321 123 235566665432 2235676788888875
|
|
| >cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.032 Score=58.76 Aligned_cols=106 Identities=12% Similarity=0.040 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCC--CCCCCchhhHhhhCCCC-EEEEE-----c---CCCCh
Q 003472 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASP--GPSGSLQCDLYRPFRLP-GILVG-----D---GRLGG 263 (817)
Q Consensus 195 ~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p--~~~~~~~~~la~~l~~p-vilV~-----~---~~~g~ 263 (817)
++|.+++.+..+. ...|+||||=-|-+.+. ++.-...-++...++-. +++|- - .+.--
T Consensus 118 ~eIk~~i~~~~~~-----------~~~dv~i~EiGGTvGDiEs~pf~EAirq~~~~~g~~n~~~ihvt~vp~~~~~gE~K 186 (255)
T cd03113 118 DEIKERIRRVAEK-----------SGADVVIVEIGGTVGDIESLPFLEAIRQMKLELGRENVLFIHVTLVPYLKAAGELK 186 (255)
T ss_pred HHHHHHHHHhhcc-----------CCCCEEEEEeCCccccccccHHHHHHHHHHHHhCcCcEEEEEEeeeeeecCCCccc
Confidence 5666666665532 34899999986655443 11112334444444422 32221 1 11112
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccC---CCCCHHHHHHhhcCCCcEEe-cCCC
Q 003472 264 ISGTISAYESLKLRGYDVVAVVFEDH---GLVNEVPLMSYLRNRVPVLV-LPPL 313 (817)
Q Consensus 264 i~~~~~~~~~l~~~~~~v~gvi~n~~---~~~~~~~l~~~~~~~~pvlg-iP~~ 313 (817)
---|-++++.|+++|+++.++|+|.- ...+.+.|.... ++|+.+ +|..
T Consensus 187 TKPtQhSVeaLRs~GIqPDgIVcRse~pL~e~~keKIAlFc--nVpve~VI~~~ 238 (255)
T cd03113 187 TKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALFC--DVPPEAVISAP 238 (255)
T ss_pred cCchHHHHHHHHhCCCCCCEEEEeCCCCCchHHHHHHHHhc--CCCHHHeeecC
Confidence 34567899999999999999999985 334556666666 999988 5543
|
The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain. |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.099 Score=59.39 Aligned_cols=83 Identities=17% Similarity=0.070 Sum_probs=46.7
Q ss_pred CCCEEEEeCCCCCCCCCCCCC--chhhHhhhCCC--CEEEEEcCCCChHHHHHHHHHHHHh-CCCcEEEEEEccCCC-CC
Q 003472 220 MEILCIVETAGGVASPGPSGS--LQCDLYRPFRL--PGILVGDGRLGGISGTISAYESLKL-RGYDVVAVVFEDHGL-VN 293 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~--~~~~la~~l~~--pvilV~~~~~g~i~~~~~~~~~l~~-~~~~v~gvi~n~~~~-~~ 293 (817)
++|+|||-++|.. +.+... -...+....+. .++||.+...+. +... +.+.. ..+.+-|+|+.+.+. ..
T Consensus 254 ~~DlVLIDTaGr~--~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~-~~~~---~~~~~~~~~~~~~~I~TKlDet~~ 327 (388)
T PRK12723 254 DFDLVLVDTIGKS--PKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT-SDVK---EIFHQFSPFSYKTVIFTKLDETTC 327 (388)
T ss_pred CCCEEEEcCCCCC--ccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH-HHHH---HHHHHhcCCCCCEEEEEeccCCCc
Confidence 3899999999954 321100 11233333333 489999987663 2222 33332 346789999999833 22
Q ss_pred ---HHHHHHhhcCCCcEEec
Q 003472 294 ---EVPLMSYLRNRVPVLVL 310 (817)
Q Consensus 294 ---~~~l~~~~~~~~pvlgi 310 (817)
.-.+...+ ++|+.-+
T Consensus 328 ~G~~l~~~~~~--~~Pi~yi 345 (388)
T PRK12723 328 VGNLISLIYEM--RKEVSYV 345 (388)
T ss_pred chHHHHHHHHH--CCCEEEE
Confidence 22233344 7887554
|
|
| >PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.14 Score=53.83 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=33.8
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
|+.|-+.++-.|+||||.+++|+..|. ++|.+|..+-
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la-----~~G~~V~lID 37 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELA-----ARGARVALID 37 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 678899999999999999999999994 7899998876
|
In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA []. |
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.28 Score=54.66 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=38.5
Q ss_pred HHHHHHHHhccccCCCCCCCcCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 13 HRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
.+.|+.++..| +.+ ...+-|+|. .|+||||++..|...|. .+|++|+.+.
T Consensus 42 ~~~l~~~~~~~-~~~---------~~~igi~G~-~GaGKSTl~~~l~~~l~-----~~g~~v~vi~ 91 (332)
T PRK09435 42 AQELLDALLPH-TGN---------ALRIGITGV-PGVGKSTFIEALGMHLI-----EQGHKVAVLA 91 (332)
T ss_pred HHHHHHHHhhc-CCC---------cEEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 45577776554 222 247888888 99999999999999994 6799998887
|
|
| >PRK13235 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.071 Score=57.53 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
|+.|-|++ -.||||||+|..|..+|. ++|+||..+=
T Consensus 1 m~~iav~~-KGGVGKTT~~~nLA~~La-----~~G~rVLlID 36 (274)
T PRK13235 1 MRKVAIYG-KGGIGKSTTTQNTVAGLA-----EMGKKVMVVG 36 (274)
T ss_pred CCEEEEeC-CCCccHHHHHHHHHHHHH-----HCCCcEEEEe
Confidence 56788886 899999999999999994 8899998874
|
|
| >PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.0091 Score=63.60 Aligned_cols=112 Identities=15% Similarity=0.223 Sum_probs=63.1
Q ss_pred CCCEEEEeCC-----CCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChH---HHHHHHHHHHHhCC-CcEEEEEEccCC
Q 003472 220 MEILCIVETA-----GGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGI---SGTISAYESLKLRG-YDVVAVVFEDHG 290 (817)
Q Consensus 220 ~~d~vivEGa-----gg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i---~~~~~~~~~l~~~~-~~v~gvi~n~~~ 290 (817)
+.|+|+-.-. ||++.|+.++. --.|++|+++...++ |.+..+++.+..++ .++.|+|.|.-.
T Consensus 116 ~~D~v~yDVLGDVVCGGFamPir~g~---------a~evyIVtSge~mslyAANNI~~~i~~~~~~g~~~l~GiI~N~r~ 186 (273)
T PF00142_consen 116 DYDFVLYDVLGDVVCGGFAMPIREGY---------AQEVYIVTSGEFMSLYAANNICKAIKNFADRGGARLGGIICNSRN 186 (273)
T ss_dssp TSSEEEEEEESSSSCTTTTHHHHTTS----------SEEEEEEBSSHHHHHHHHHHHHHHHHHCTTSS-EEEEEEEE-SS
T ss_pred CCceEEEEEEeeeEEeeeehhhhhcc---------CCEEEEEecCcHHHHHHHHHHHHHHHHHhccCCCceEEEEecCCC
Confidence 4788776543 55666654332 236889999887665 55555666665554 589999999653
Q ss_pred -CCCHHHHHHhhcC-CCcEEe-cCCCCCCC-----cchhhhhhccch--hhhhhHHHHHH
Q 003472 291 -LVNEVPLMSYLRN-RVPVLV-LPPLPQDS-----SNDLMEWFDESH--NVFDSLKNIML 340 (817)
Q Consensus 291 -~~~~~~l~~~~~~-~~pvlg-iP~~~~~~-----~~~~~~~l~~~~--~~f~~l~~~l~ 340 (817)
+...+.++++.+. +.|+++ ||..+... ..++.|+.-.+. ..|..|.+.+.
T Consensus 187 ~~~e~~~v~~fa~~~g~~i~~~iPr~~~v~~ae~~~~TVie~~P~s~~a~~yr~LA~~I~ 246 (273)
T PF00142_consen 187 VDDEEEIVEDFAERIGTPIIAFIPRSEIVQRAELYGKTVIEAAPDSEQAQEYRELARKIL 246 (273)
T ss_dssp STTHHHHHHHHHHHHTSEEEEEE---HHHHHHHHCTS-CCCC-TTSHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHcCCcEEEecCchHHHHHHHHcCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 3334444444444 999999 99876543 235555444442 23555444443
|
Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H .... |
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.4 Score=56.66 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=52.2
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhc--CCcEEEeeeeeccccccccchhhhcCCCCc-e---eecccccC-C
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLGCVPD-I---ACYGKLLT-G 693 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~--GilLI~DEV~TGfGRtG~~~a~e~~gv~PD-i---vtlgK~Lg-g 693 (817)
+.+|+-|- .=-|.+. +++-+++|.++|++| ++++|.|||..-|- ..+- ......|| + .++||.+| .
T Consensus 243 ai~l~nP~--NPTG~vl-s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~--~~~~--sl~~~~~~~vI~v~SfSK~fg~~ 315 (521)
T TIGR03801 243 ALFVVNPS--NPPSVAM-SDESIEKIVDIVANDRPDLMILTDDVYGTFV--DDFR--SLFAELPYNTIGVYSFSKYFGAT 315 (521)
T ss_pred EEEEeCCC--CCCCCCC-CHHHHHHHHHHHHhcCCCeEEEECCCchhhc--cccc--chhhhCCCCEEEEEcchhhccCc
Confidence 44556883 3345544 788999999999987 99999999996562 2211 11122354 2 27999987 5
Q ss_pred CCCcceEEEechH
Q 003472 694 GVIPLAATLATNA 706 (817)
Q Consensus 694 Gy~PlsAvl~s~~ 706 (817)
| +=+|.+++.++
T Consensus 316 G-~RlG~i~~~~~ 327 (521)
T TIGR03801 316 G-WRLGTIALHKD 327 (521)
T ss_pred h-hhhhhhhcCch
Confidence 6 67777888754
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.088 Score=60.56 Aligned_cols=77 Identities=18% Similarity=0.209 Sum_probs=50.8
Q ss_pred ccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc----cchhhhcCCCC-cee---ecccccC-CCCCcceE
Q 003472 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTADLLGCVP-DIA---CYGKLLT-GGVIPLAA 700 (817)
Q Consensus 630 qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~----~~a~e~~gv~P-Div---tlgK~Lg-gGy~PlsA 700 (817)
+.=-|.+. +.+.+++|.++|++||+++|.||+..+|. .+. ......+--.. .++ +|||.++ .| +=+|.
T Consensus 204 ~NPTG~v~-s~e~l~~i~~~a~~~~~~vI~De~Y~~l~-~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G-~RvG~ 280 (423)
T PLN02397 204 HNPTGVDP-TPEQWEQISDLIKSKNHLPFFDSAYQGFA-SGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYG-ERVGA 280 (423)
T ss_pred CCCCCCCC-CHHHHHHHHHHHHhCCcEEEEecccCCcc-CCchhhhhHHHHHHHhcCCcEEEEEECcccCCCcc-ccceE
Confidence 34346655 78899999999999999999999998883 221 11111111122 344 7899999 57 67887
Q ss_pred EE--e-chHHHh
Q 003472 701 TL--A-TNAVFD 709 (817)
Q Consensus 701 vl--~-s~~i~d 709 (817)
++ + .+++++
T Consensus 281 ~v~~~~~~~~~~ 292 (423)
T PLN02397 281 LSVVCKSADVAV 292 (423)
T ss_pred EEEEeCCHHHHH
Confidence 74 3 555444
|
|
| >PRK13234 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.089 Score=57.60 Aligned_cols=37 Identities=11% Similarity=0.263 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+|+.|-|. --.||||||++.-|..+|. ++|+||..+=
T Consensus 3 ~~~~iai~-~KGGvGKTt~~~nLa~~la-----~~g~kVLliD 39 (295)
T PRK13234 3 KLRQIAFY-GKGGIGKSTTSQNTLAALV-----EMGQKILIVG 39 (295)
T ss_pred cceEEEEE-CCCCccHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 57788787 6889999999999999994 8899998874
|
|
| >PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.015 Score=63.30 Aligned_cols=38 Identities=8% Similarity=0.094 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+.+.+.+.||+..+||-|.++.|.++|+ ++|+++.+.-
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~-----~~G~~a~fva 148 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALR-----ERGINAGFVA 148 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHH-----HTT--EEEEE
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHH-----HcCCCceEEe
Confidence 4689999999999999999999999995 8899998865
|
The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A. |
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.31 Score=53.48 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
++.+.|+|. +|+||||++..|+..+. ++|++|..+.
T Consensus 34 ~~~i~i~G~-~G~GKttl~~~l~~~~~-----~~~~~v~~i~ 69 (300)
T TIGR00750 34 AHRVGITGT-PGAGKSTLLEALGMELR-----RRGLKVAVIA 69 (300)
T ss_pred ceEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 568889987 99999999999999994 7799998776
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.11 Score=57.90 Aligned_cols=124 Identities=11% Similarity=0.081 Sum_probs=70.9
Q ss_pred cCCHHHHHHHHHHHhhcCCcEEEeeeee-ccccccccchhhhcCCCCcee--ecccccCCCCCcceEEEech-HHHhhhc
Q 003472 637 MVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATN-AVFDSFV 712 (817)
Q Consensus 637 ~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-GfGRtG~~~a~e~~gv~PDiv--tlgK~LggGy~PlsAvl~s~-~i~d~~~ 712 (817)
.+-+--++++|++|++-|+.|++|=.|- |+ --|..+- .-.. ..|++ |.=|.|-|- --|.+++++ ++.+.+.
T Consensus 177 Y~r~id~~~~reIad~VGA~L~~DmAHiaGL-VA~G~~p-~P~~-~AdvVTtTTHKTlrGP--rGG~Il~~~eel~kkin 251 (413)
T COG0112 177 YSRPIDFKRFREIADEVGAYLMVDMAHVAGL-IAGGVHP-NPLP-HADVVTTTTHKTLRGP--RGGIILTNDEELAKKIN 251 (413)
T ss_pred cccccCHHHHHHHHHHhCceEEehHHHHHHH-HhcccCC-CCCC-ccceEeCCcccCCCCC--CceEEEeccHHHHHHhh
Confidence 3334449999999999999999999983 44 1111111 1111 25888 567888751 012466774 7777775
Q ss_pred CCCccceeecccCCCCCHHHHHH--HHHHHHHhcC--cCchhcHHHHHHHHHHHHHHHHHHHH
Q 003472 713 GDSKLKALLHGHSYSAHALGCAA--AAKSIKWFKD--PQTNHNIIPERRILRELWDLELIQQI 771 (817)
Q Consensus 713 ~~~~~~~~~h~~T~~gnPla~AA--AlA~L~~l~~--~~l~~~l~~~~~~lg~~l~~~l~~~l 771 (817)
.. .+..+.+|+-+-.-| |.|.-+.++- .+..+++.+|++.|.+.|.++..+.+
T Consensus 252 ~a------VFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~~vv 308 (413)
T COG0112 252 SA------VFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGFKVV 308 (413)
T ss_pred hh------cCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCCeEe
Confidence 32 233344443222222 2233333322 24568889999998887665444333
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.84 Score=53.15 Aligned_cols=180 Identities=9% Similarity=-0.024 Sum_probs=101.9
Q ss_pred ChHHHHHHHHHHhhcCCCCcc-eEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCc
Q 003472 442 YEPALECAELLLQGVGKGWAS-RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (817)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~~~-~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t 520 (817)
++...++-+.++++++-+.-+ .-+++++|||||-.||..| |.+.. ..++.....-|-+.
T Consensus 132 ~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aA-Re~~~-------------------~~vvy~S~~aH~Sv 191 (470)
T PLN02263 132 RQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVG-REVFP-------------------DGILYASRESHYSV 191 (470)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHH-HhhcC-------------------CcEEEEcCCccHHH
Confidence 444556666666666532101 3588999999999999999 55421 13566666666544
Q ss_pred cccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHH
Q 003472 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (817)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~ 600 (817)
.=+..+-|-. +..+|....+ -+ |
T Consensus 192 ~KAa~llgi~----------------------------~~~Vp~d~~g-------------~m--------D-------- 214 (470)
T PLN02263 192 FKAARMYRME----------------------------CVKVDTLVSG-------------EI--------D-------- 214 (470)
T ss_pred HHHHHhcCCc----------------------------ceEeccCCCC-------------cC--------c--------
Confidence 4343333221 1122211110 01 1
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCC-----cEEEeeeeeccccccccch-
Q 003472 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI-----PVIFDEVFTGFWRLGVETT- 674 (817)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~Gi-----lLI~DEV~TGfGRtG~~~a- 674 (817)
.+.|++.|++ ...+...|+.-- ....-|.+-| +++|.++|+++|+ .|=+|=...|+- -.+.-
T Consensus 215 ~~aL~~aI~~-----d~~~P~iVvata-GTT~~GAiDp----i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~--lPf~~~ 282 (470)
T PLN02263 215 CADFKAKLLA-----NKDKPAIINVNI-GTTVKGAVDD----LDLVIKTLEECGFSQDRFYIHCDGALFGLM--MPFVKR 282 (470)
T ss_pred HHHHHHHHHh-----CCCCcEEEEEEe-cCCCCcCCCC----HHHHHHHHHHcCCccCCeeEEEeccchhhH--hhhccc
Confidence 2566777763 123344444332 2445577777 9999999999997 888998887651 11110
Q ss_pred hhhcC--CCCceeec--ccccCCCCCcceEEEechHHHhhh
Q 003472 675 ADLLG--CVPDIACY--GKLLTGGVIPLAATLATNAVFDSF 711 (817)
Q Consensus 675 ~e~~g--v~PDivtl--gK~LggGy~PlsAvl~s~~i~d~~ 711 (817)
...++ ...|=+++ =|-++.- +|.|+++.++...+.+
T Consensus 283 ~~~~df~~~vDSIsvD~HK~l~~P-~~cgvll~R~~~~~~~ 322 (470)
T PLN02263 283 APKVTFKKPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVL 322 (470)
T ss_pred ccccCCCcCccEEEECCccccCCC-cCEEEEEEehhhHhhh
Confidence 00111 12454444 3655556 7889999998766555
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.22 Score=58.94 Aligned_cols=78 Identities=14% Similarity=0.232 Sum_probs=52.1
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhh--cCCcEEEeeeeeccccccccchhhhcCCCCc-e---eecccccC-C
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGVETTADLLGCVPD-I---ACYGKLLT-G 693 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~--~GilLI~DEV~TGfGRtG~~~a~e~~gv~PD-i---vtlgK~Lg-g 693 (817)
+.+|+-| +.=-|.+. +++-+++|.++|++ +|+++|.|||..-|. +... ......|| + .+|||.+| .
T Consensus 244 ai~l~nP--~NPTG~v~-s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~--~~~~--s~~~~~~~~~I~v~SfSK~f~mt 316 (527)
T PRK09275 244 ALFLVNP--SNPPSVAM-SDESLEKIADIVNEKRPDLMIITDDVYGTFV--DDFR--SLFAVLPYNTILVYSFSKYFGAT 316 (527)
T ss_pred EEEEeCC--cCCcCCCC-CHHHHHHHHHHHHhcCCCcEEEECCCChhhc--cccc--CHHHhCCCCEEEEeehhhhccCc
Confidence 3455677 34446555 78999999999964 599999999997662 2211 11122344 2 27899987 5
Q ss_pred CCCcceEEEechH
Q 003472 694 GVIPLAATLATNA 706 (817)
Q Consensus 694 Gy~PlsAvl~s~~ 706 (817)
| +=+|.+++.++
T Consensus 317 G-~RlG~i~~~~~ 328 (527)
T PRK09275 317 G-WRLGVIALHED 328 (527)
T ss_pred H-hHHhhhhcCch
Confidence 6 57777888875
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.19 Score=57.41 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=27.9
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 38 ~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+.++|+|. +||||||+++-|+..+. . ++|.+|..+-
T Consensus 224 ~vi~lvGp-tGvGKTTtaaKLA~~~~---~-~~G~~V~Lit 259 (432)
T PRK12724 224 KVVFFVGP-TGSGKTTSIAKLAAKYF---L-HMGKSVSLYT 259 (432)
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHH---H-hcCCeEEEec
Confidence 46888885 89999999999997552 1 6688887654
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.15 Score=61.95 Aligned_cols=146 Identities=18% Similarity=0.221 Sum_probs=87.4
Q ss_pred ChHHHHHHHHHHhhcCCCCcceEEEeCCh-HHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCc
Q 003472 442 YEPALECAELLLQGVGKGWASRAYFSDNG-STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (817)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~~~~v~f~~SG-seA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t 520 (817)
+.+..+..+..++.+| .++.+|...| |.+|.+++..+ ..+.+.|.++...|=|.
T Consensus 194 ~G~i~eAe~~AA~~fg---Ad~tyfvvNGTS~~n~av~~a~----------------------~~~Gd~VLvdRN~HKSv 248 (714)
T PRK15400 194 SGPHKEAEEYIARVFN---ADRSYMVTNGTSTANKIVGMYS----------------------APAGSTVLIDRNCHKSL 248 (714)
T ss_pred ChHHHHHHHHHHHHhC---CCcEEEEeCchHHHHHHHHHHh----------------------cCCCCEEEeecccHHHH
Confidence 4456666666667787 5789888878 45555555444 22346788999999999
Q ss_pred cccccccCCC-CCCCcCCCCCccCCccccCCCcccccCcceeecCC-chhhhcccccccccccCcchhhhhccCchhHHH
Q 003472 521 LGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (817)
Q Consensus 521 ~galslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P-~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~ 598 (817)
..++.++|.. .|-.+ -+..+|... ++| .. |.
T Consensus 249 ~haLilsga~PVYl~P----~rn~~Gi~g--------------~I~~~~------------~~----------------- 281 (714)
T PRK15400 249 THLMMMSDVTPIYFRP----TRNAYGILG--------------GIPQSE------------FQ----------------- 281 (714)
T ss_pred HHHHHHcCCeEEEecc----cccccCCcc--------------CCCccc------------cC-----------------
Confidence 9999999853 22211 001111100 000 00 00
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc
Q 003472 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (817)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~ 672 (817)
.+.+++.|++... .....++||.-|-. .|+..- ++.|.++|+.++ ++|||++-|.-+....
T Consensus 282 --~e~i~~~i~~~p~--ak~p~~~vit~pTY---dG~~yd----~~~I~~~~~~~~--ilvDEAwgah~~F~p~ 342 (714)
T PRK15400 282 --HATIAKRVKETPN--ATWPVHAVITNSTY---DGLLYN----TDFIKKTLDVKS--IHFDSAWVPYTNFSPI 342 (714)
T ss_pred --HHHHHHHHHhCcc--ccCccEEEEECCCC---ccEecC----HHHHHHHhCCCC--EEEEccchhhhccCcc
Confidence 1567777764210 01113588888853 456555 789999999888 6899999765455543
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.38 Score=54.50 Aligned_cols=83 Identities=16% Similarity=0.075 Sum_probs=48.8
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC-CCceeec--ccccCCCC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGGV 695 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivtl--gK~LggGy 695 (817)
.+-.+|+=.......|.+-+ +++|.++|++|++.|=+|=...|..-.-+..-.-..|+ ..|=+++ -|-++--
T Consensus 193 ~~p~~vvat~Gtt~~Ga~D~----l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P- 267 (373)
T PF00282_consen 193 KTPFAVVATAGTTNTGAIDP----LEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVP- 267 (373)
T ss_dssp EEEEEEEEEBS-TTTSBB-S----HHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-S-
T ss_pred ccceeeeccCCCcccccccC----HHHHhhhccccceeeeecccccccccccccccccccccccccccccchhhhhcCC-
Confidence 33333443432444577766 99999999999999999998866322222222222344 2465543 6777666
Q ss_pred CcceEEEechH
Q 003472 696 IPLAATLATNA 706 (817)
Q Consensus 696 ~PlsAvl~s~~ 706 (817)
++.|.++++.+
T Consensus 268 ~~~~~~l~r~~ 278 (373)
T PF00282_consen 268 YGCGVLLVRDK 278 (373)
T ss_dssp SS-EEEEESSG
T ss_pred ccceeEEeecc
Confidence 58888888875
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.15 Score=52.61 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=27.1
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 38 ~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+.+++.|. |||||||..+-|+..++ .+|++|...=
T Consensus 2 ~vi~lvGp-tGvGKTTt~aKLAa~~~-----~~~~~v~lis 36 (196)
T PF00448_consen 2 KVIALVGP-TGVGKTTTIAKLAARLK-----LKGKKVALIS 36 (196)
T ss_dssp EEEEEEES-TTSSHHHHHHHHHHHHH-----HTT--EEEEE
T ss_pred EEEEEECC-CCCchHhHHHHHHHHHh-----hccccceeec
Confidence 46777887 89999999999999995 4488887765
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.085 Score=56.25 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=38.4
Q ss_pred hhHHHHHHHHhccccCCCCCCCcCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 11 DHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+..+.+|.+++.|.- +...|=|||+ .|+||||+.-.|.+.|. ++|++|+..-
T Consensus 13 ~~~~~ll~~l~~~~g----------~a~~iGiTG~-PGaGKSTli~~l~~~~~-----~~g~~VaVlA 64 (266)
T PF03308_consen 13 PEARELLKRLYPHTG----------RAHVIGITGP-PGAGKSTLIDALIRELR-----ERGKRVAVLA 64 (266)
T ss_dssp HHHHHHHHHHGGGTT-----------SEEEEEEE--TTSSHHHHHHHHHHHHH-----HTT--EEEEE
T ss_pred HHHHHHHHHHHhhcC----------CceEEEeeCC-CCCcHHHHHHHHHHHHh-----hcCCceEEEE
Confidence 356678888886632 1247889998 89999999999999995 6799988765
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.035 Score=62.69 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=34.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (817)
+|+.+.|+|. +|+||||+...|++.|+ ++|++|++.|=
T Consensus 204 ~~~~~~~~g~-~~~GKtt~~~~l~~~l~-----~~g~~v~~iKh 241 (366)
T PRK14489 204 APPLLGVVGY-SGTGKTTLLEKLIPELI-----ARGYRIGLIKH 241 (366)
T ss_pred CccEEEEecC-CCCCHHHHHHHHHHHHH-----HcCCEEEEEEE
Confidence 4788999995 99999999999999994 78999999993
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.89 Score=51.40 Aligned_cols=147 Identities=10% Similarity=-0.004 Sum_probs=90.2
Q ss_pred CcEEEeeeeeccccccccchhhhcCCCCceeecccccCCCCCc-ceEEEechHHHhhhcCCCc-cce----eecccCC-C
Q 003472 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIP-LAATLATNAVFDSFVGDSK-LKA----LLHGHSY-S 727 (817)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggGy~P-lsAvl~s~~i~d~~~~~~~-~~~----~~h~~T~-~ 727 (817)
+++|+|=+++-. +.-.-.+.+|+ |+..--|.+| .| ++.+++++++.+....... ... .-..++| +
T Consensus 171 ~~lvVDa~Ss~g---~~pidv~~~~v--~~~saqK~lG---P~Gl~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~T 242 (365)
T PLN02452 171 VPLVADMSSNFL---SKPVDVSKYGV--IYAGAQKNVG---PSGVTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNT 242 (365)
T ss_pred CeEEEECCcccc---CcccCHHHcCE--EEEecccccC---CCCeEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCC
Confidence 899999999632 33444566676 7777788884 34 7889999999876532211 000 0123444 4
Q ss_pred CCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH-cCCCcc-eEEeeeeEEEEEEecCCCCCCcchHHH
Q 003472 728 AHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS-SHRTVQ-RVVALGTLCAIELQAAGCNAGYCLIEL 805 (817)
Q Consensus 728 gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~-~~p~V~-~VrG~Glm~gIel~~~~~~~~~~~~~~ 805 (817)
.+-.++.+..++|+++++++-.+++.++-+.+.+++.+.+.+... -.+.+. +.| ....+.+.+.+. +....
T Consensus 243 P~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~r-s~~~vsF~~~~~------~~~~~ 315 (365)
T PLN02452 243 PPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVR-SLMNVPFTLGGS------ELEAE 315 (365)
T ss_pred hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHh-CCeEEEEEcCCc------hhHHH
Confidence 455667777799999987533567777777777766654433210 001121 123 234555555443 47889
Q ss_pred HHHHHHHcCCC
Q 003472 806 FLYNFLTTGMH 816 (817)
Q Consensus 806 ~~~~~l~~Gv~ 816 (817)
|+..+.++|+.
T Consensus 316 f~~~~~~~g~~ 326 (365)
T PLN02452 316 FVKEAAKAGMV 326 (365)
T ss_pred HHHHHHHCCCc
Confidence 99999999974
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.45 Score=51.51 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=30.3
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
..+.+.+.|. +|+|||++...|+..+. .+|.+|++.-
T Consensus 74 ~~~~i~~~G~-~g~GKTtl~~~l~~~l~-----~~~~~v~~i~ 110 (270)
T PRK06731 74 EVQTIALIGP-TGVGKTTTLAKMAWQFH-----GKKKTVGFIT 110 (270)
T ss_pred CCCEEEEECC-CCCcHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 4468888888 99999999999999983 5577777765
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.14 Score=58.20 Aligned_cols=142 Identities=10% Similarity=-0.016 Sum_probs=73.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee-ccccccccchhhhcCC
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGC 680 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-GfGRtG~~~a~e~~gv 680 (817)
+.+++.+++ .+...||+-+- ..+-+.+ ++++|++|++.|++|++|=.|+ |+ -.|..+ -.-+..
T Consensus 159 d~l~~~a~~-------~kPklIi~G~S------~y~~~~d-~~~~reIad~vga~l~~D~sH~~GL-Ia~g~~-~~P~~~ 222 (399)
T PF00464_consen 159 DELEKLAKE-------HKPKLIICGAS------SYPRPID-FKRFREIADEVGAYLMADISHIAGL-IAGGLF-PNPFPY 222 (399)
T ss_dssp HHHHHHHHH-------H--SEEEEE-S------STSS----HHHHHHHHHHTT-EEEEE-TTTHHH-HHTTSS---GCCT
T ss_pred HHHHHHHhh-------cCCCEEEECch------hccCccC-HHHHHHHHHhcCcEEEecccccccc-eehhee-cCcccc
Confidence 556666664 13345666553 1222333 5999999999999999999996 44 222222 122332
Q ss_pred CCcee--ecccccCCCCCcceEEEec--------------hHHHhhhcCCCccceeecccCCCCCHHHHHHHH-HHHHHh
Q 003472 681 VPDIA--CYGKLLTGGVIPLAATLAT--------------NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAA-KSIKWF 743 (817)
Q Consensus 681 ~PDiv--tlgK~LggGy~PlsAvl~s--------------~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAl-A~L~~l 743 (817)
.|++ +.-|.|.|= .-|.++++ +++.+.+... .+....+++-..-.||+ .+|...
T Consensus 223 -ADvvt~sThKtl~GP--rggiI~~~~~~~~~~~~~~~~~~~l~~~I~~a------vfP~~qg~~h~~~iaalAval~ea 293 (399)
T PF00464_consen 223 -ADVVTGSTHKTLRGP--RGGIILTNKGSKNVDKKGKEIDEELAEKIDSA------VFPGLQGGPHMHRIAALAVALKEA 293 (399)
T ss_dssp -SSEEEEESSGGG-SS--S-EEEEES-SEEEE-TTS-EEEHHHHHHHHHH------HTTTT-SS--HHHHHHHHHHHHHH
T ss_pred -ceEEEeecccccccc--CceEEEEcCCccccCCcccccHHHHHHHhccc------cCCCcccCcchhHHHHHHHHHhcc
Confidence 6998 457999861 12346677 6777666432 12222233222222222 233333
Q ss_pred cC---cCchhcHHHHHHHHHHHHHHHHH
Q 003472 744 KD---PQTNHNIIPERRILRELWDLELI 768 (817)
Q Consensus 744 ~~---~~l~~~l~~~~~~lg~~l~~~l~ 768 (817)
.+ .++..++.+|++.|.+.|.+...
T Consensus 294 ~~~~fk~Ya~qVv~NAk~La~~L~~~G~ 321 (399)
T PF00464_consen 294 LSPEFKEYAKQVVKNAKALAEALQERGF 321 (399)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 33 35668888999998886665433
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.056 Score=64.84 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=35.5
Q ss_pred CCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 003472 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (817)
Q Consensus 35 ~~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (817)
++|+.|-|.|. +|+||||+...|+..|+ ++|+||+..|=
T Consensus 8 ~~~~vi~ivG~-s~sGKTTlie~li~~L~-----~~G~rVavIKh 46 (597)
T PRK14491 8 LSIPLLGFCAY-SGTGKTTLLEQLIPELN-----QRGLRLAVIKH 46 (597)
T ss_pred CCccEEEEEcC-CCCCHHHHHHHHHHHHH-----hCCceEEEEEc
Confidence 45789999997 99999999999999994 88999999994
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.3 Score=59.73 Aligned_cols=84 Identities=14% Similarity=0.212 Sum_probs=47.5
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhC----CCCEEEEEcCCCCh--HHHHHHHHHHHHhC-CCcEEEEEEccCCCC
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPF----RLPGILVGDGRLGG--ISGTISAYESLKLR-GYDVVAVVFEDHGLV 292 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l----~~pvilV~~~~~g~--i~~~~~~~~~l~~~-~~~v~gvi~n~~~~~ 292 (817)
++|+|||.++| .++.+. ..+-++.+.. ...++||.+.-.+. ++.++ +.++.. +.++-|+||.|++..
T Consensus 263 ~~D~VLIDTAG--Rs~~d~-~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~---~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 263 DKHLVLIDTVG--MSQRDR-NVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV---HAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred CCCEEEEeCCC--CCccCH-HHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH---HHHhhcccCCCCEEEEeccCCC
Confidence 38999999999 344322 2333333322 23489999865432 33333 334322 346889999998432
Q ss_pred -C---HHHHHHhhcCCCcEEecC
Q 003472 293 -N---EVPLMSYLRNRVPVLVLP 311 (817)
Q Consensus 293 -~---~~~l~~~~~~~~pvlgiP 311 (817)
. .-.+...+ ++|+.-|-
T Consensus 337 ~~~G~iL~i~~~~--~lPI~yit 357 (767)
T PRK14723 337 THLGPALDTVIRH--RLPVHYVS 357 (767)
T ss_pred CCccHHHHHHHHH--CCCeEEEe
Confidence 2 22233444 78876643
|
|
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.61 Score=52.11 Aligned_cols=67 Identities=19% Similarity=0.104 Sum_probs=41.4
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCC-CEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRL-PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~-pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~ 289 (817)
.+|++||.++|-.---..--.-..++++.++- .||+|.|...|- +.......-..-+.|-+||+.+.
T Consensus 183 ~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ---aae~Qa~aFk~~vdvg~vIlTKl 250 (483)
T KOG0780|consen 183 NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQ---AAEAQARAFKETVDVGAVILTKL 250 (483)
T ss_pred CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccH---hHHHHHHHHHHhhccceEEEEec
Confidence 49999999988321110000234677777763 389999976553 33322222234578999999997
|
|
| >PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.021 Score=60.52 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=34.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
||.|.|.|+-.||||||+|+.|+.+|. +.|++|...-
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~-----~~G~~VlaID 37 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALA-----RLGESVLAID 37 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHH-----HCCCcEEEEe
Confidence 789999999999999999999999994 8899988765
|
It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined. |
| >COG3367 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.4 Score=52.35 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=33.8
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
.+.+++.||+.-+||=|.+.-|-++++ .+|+++.+.-
T Consensus 148 a~~V~vvGTd~~vGKrTTa~~L~~~~~-----e~G~~a~fva 184 (339)
T COG3367 148 AKVVLVVGTDCAVGKRTTALELREAAR-----EEGIKAGFVA 184 (339)
T ss_pred CcEEEEeccccccchhHHHHHHHHHHH-----HhCCccceEe
Confidence 579999999999999999999999995 8899998865
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.51 Score=46.16 Aligned_cols=62 Identities=19% Similarity=0.020 Sum_probs=46.6
Q ss_pred CchhhHhhhCCCCEEEEEc-CCCC-hHHHHHHHHHHHHhCCCcEEEEEEccCCCCCHHHHHHhhc
Q 003472 240 SLQCDLYRPFRLPGILVGD-GRLG-GISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLR 302 (817)
Q Consensus 240 ~~~~~la~~l~~pvilV~~-~~~g-~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~~~~~l~~~~~ 302 (817)
...-.+++.++.|||=|+. .++- .-...-.+.+.|+..|.+=. +.++-+..+..+.|++|++
T Consensus 79 ~~pP~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~i-f~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 79 VFPPGFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEI-FEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred cCCchhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCe-EEEECCCCcCHHHHHHHHh
Confidence 3445677888999998777 6665 34555567788888898644 7777778889999999874
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.029 Score=54.60 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=31.6
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEccccc
Q 003472 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQT 82 (817)
Q Consensus 38 ~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~ 82 (817)
|.++|.|. +++||||++..|+..|+ ++|++|+++|=...
T Consensus 1 pvv~VvG~-~~sGKTTl~~~Li~~l~-----~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGP-KNSGKTTLIRKLINELK-----RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEES-TTSSHHHHHHHHHHHHH-----HTT--EEEEEE-ST
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHh-----HcCCceEEEEEccC
Confidence 57899997 79999999999999995 89999999996544
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.17 Score=61.48 Aligned_cols=171 Identities=13% Similarity=0.123 Sum_probs=93.0
Q ss_pred ChHHHHHHHHHHhhcCCCCcceEEEeCChHHH-HHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCc
Q 003472 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTA-IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (817)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA-~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t 520 (817)
..+..+..+..++.+| .++.+|...||.+ |.+++..+ ..+.+.|.++...|=+.
T Consensus 173 eG~i~eAq~~AA~~fg---Ad~tyFlvNGTS~gn~a~i~a~----------------------~~~Gd~VLvdRN~HKSv 227 (720)
T PRK13578 173 EGAAKDAQKHAAKVFN---ADKTYFVLNGTSASNKVVTNAL----------------------LTPGDLVLFDRNNHKSN 227 (720)
T ss_pred ChHHHHHHHHHHHHhC---CCceEEEeCChhHHHHHHHHHh----------------------cCCCCEEEeecccHHHH
Confidence 3455566666666788 5788887666654 44444433 22346788999999998
Q ss_pred ccc-ccccCCC-CCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHH
Q 003472 521 LGA-MEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (817)
Q Consensus 521 ~ga-lslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~ 598 (817)
..+ +-++|.. .|-.+ -+..+|... +++ . ++..
T Consensus 228 ~hgaLiLsGa~PVYl~P----~~n~~Gi~g--------------~I~--------------~-------------~~~~- 261 (720)
T PRK13578 228 HHGALIQAGATPVYLET----ARNPFGFIG--------------GID--------------A-------------HCFD- 261 (720)
T ss_pred HHHHHHHcCCeEEEeec----cccccCCcC--------------CCC--------------h-------------HHcc-
Confidence 864 8888742 22211 000111100 000 0 0000
Q ss_pred HHHHHHHHHHhcCC-CC--CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHH-HhhcCCcEEEeeeeecccccccc--
Q 003472 599 IYSSYISQNLLQNP-GL--KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVE-- 672 (817)
Q Consensus 599 ~~~~~Le~~L~~~~-~~--~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~L-c~~~GilLI~DEV~TGfGRtG~~-- 672 (817)
.+.+++.|++.. .+ ....--++||.-|-. .|+..- ++.|.++ |+.++ .|+|||++-|.-+....
T Consensus 262 --~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY---dG~~yd----i~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~ 331 (720)
T PRK13578 262 --EEYLREQIREVAPERADEARPFRLAVIQLGTY---DGTIYN----ARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMA 331 (720)
T ss_pred --HHHHHHHHHhcCccccccccCceEEEEECCCC---cceeec----HHHHHHHhhccCC-cEEEeCcchhhhccCcccc
Confidence 145666666420 00 001124677777753 456665 7888887 78888 99999999766555553
Q ss_pred -chhhhcCCCCc----eeec--ccccCC
Q 003472 673 -TTADLLGCVPD----IACY--GKLLTG 693 (817)
Q Consensus 673 -~a~e~~gv~PD----ivtl--gK~Lgg 693 (817)
+--.....-|| ++|- =|-|++
T Consensus 332 ~~p~~al~~GaD~p~i~v~QStHKtL~a 359 (720)
T PRK13578 332 DCSPLLLELNENDPGIFVTQSVHKQQAG 359 (720)
T ss_pred cCChhhhhcCCCCCCeEEEEChhhcchh
Confidence 11112334566 6543 455553
|
|
| >COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.04 Score=54.89 Aligned_cols=39 Identities=15% Similarity=0.098 Sum_probs=35.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEccc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv 80 (817)
+|+.|.|+|. +++||||+.--|++.|+ .+|++|+..|=-
T Consensus 1 m~~Il~ivG~-k~SGKTTLie~lv~~L~-----~~G~rVa~iKH~ 39 (161)
T COG1763 1 MMKILGIVGY-KNSGKTTLIEKLVRKLK-----ARGYRVATVKHA 39 (161)
T ss_pred CCcEEEEEec-CCCChhhHHHHHHHHHH-----hCCcEEEEEEec
Confidence 4789999998 89999999999999994 899999999943
|
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.18 Score=54.92 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCC-C-CceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-N-KKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~-g-~~v~~~K 78 (817)
..+.+.|.|. |||||||+++.|+..+. .+ | ++|.++.
T Consensus 193 ~~~vi~~vGp-tGvGKTTt~~kLa~~~~-----~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGP-TGVGKTTTLAKLAARFV-----LEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHH-----HHcCCCeEEEEE
Confidence 4568889997 89999999999999984 33 4 8898887
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.6 Score=51.51 Aligned_cols=36 Identities=17% Similarity=0.130 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
.-.+++.|. .|+||||..+-|++.|+ ++|++|..--
T Consensus 139 p~Vil~vGV-NG~GKTTTIaKLA~~l~-----~~g~~VllaA 174 (340)
T COG0552 139 PFVILFVGV-NGVGKTTTIAKLAKYLK-----QQGKSVLLAA 174 (340)
T ss_pred cEEEEEEec-CCCchHhHHHHHHHHHH-----HCCCeEEEEe
Confidence 567889999 59999999999999995 8899988654
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=94.34 E-value=3.2 Score=51.90 Aligned_cols=164 Identities=13% Similarity=0.046 Sum_probs=91.1
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhh---c-----CCcEEEeeeeeccccccccchhhhcCCCCceeec--c
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN---R-----KIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--G 688 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~---~-----GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--g 688 (817)
++..|.+--+ ....|.+.| ++.+.++++. + ++++++|=+|+ +|.. . .+.-.+.+|++++ =
T Consensus 192 ~t~LVa~~~v-sN~tG~i~p----i~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~-~g~~-p---iDv~~~~~Dfl~~S~H 261 (805)
T PLN02724 192 AYNLFAFPSE-CNFSGAKFP----LDLVKLIKDNQHSNFSKSGRWMVLLDAAKG-CGTS-P---PDLSRYPADFVVVSFY 261 (805)
T ss_pred CcceEEEEcc-ccCCCCcCC----HHHHHHHHHhcccccccCcceEEEeehhhh-cCCC-C---CChhhcCCCEEEEecc
Confidence 3445666665 677889887 5555544443 2 36899999994 4321 1 1222346899866 3
Q ss_pred cccCCCCCcceEEEechHHHhhhcCC---Cccceeeccc-CC--------------CCCHHHHHHHHHHHHHhcCcCchh
Q 003472 689 KLLTGGVIPLAATLATNAVFDSFVGD---SKLKALLHGH-SY--------------SAHALGCAAAAKSIKWFKDPQTNH 750 (817)
Q Consensus 689 K~LggGy~PlsAvl~s~~i~d~~~~~---~~~~~~~h~~-T~--------------~gnPla~AAAlA~L~~l~~~~l~~ 750 (817)
|-+| |=.-+|++.++++..+.+... .......... .| +-|.+++++..++|+++++-+ .+
T Consensus 262 K~~G-gP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig-~~ 339 (805)
T PLN02724 262 KIFG-YPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLT-IS 339 (805)
T ss_pred eecc-CCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhC-hH
Confidence 6554 201268899999887655321 0000000000 01 246778888888999986633 25
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHc--CCCc---ce------EEeeeeEEEEEEecC
Q 003472 751 NIIPERRILRELWDLELIQQISS--HRTV---QR------VVALGTLCAIELQAA 794 (817)
Q Consensus 751 ~l~~~~~~lg~~l~~~l~~~l~~--~p~V---~~------VrG~Glm~gIel~~~ 794 (817)
++.++...|.++|.+.|.++-.. .|.| +. ...+|-++++.+...
T Consensus 340 ~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~ 394 (805)
T PLN02724 340 AIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRA 394 (805)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcC
Confidence 66677777777766655433110 1111 11 123567888888654
|
|
| >COG2403 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.046 Score=60.37 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=36.0
Q ss_pred CCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 35 ~~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+..|+|-|+||.|++|||+||..++|.|+ .+|+||+...
T Consensus 124 ~ekPviaV~atrtg~GKsaVS~~v~r~l~-----ergyrv~vVr 162 (449)
T COG2403 124 LEKPVIAVTATRTGVGKSAVSRYVARLLR-----ERGYRVCVVR 162 (449)
T ss_pred hcCceEEEEEeccccchhHHHHHHHHHHH-----HcCCceEEEe
Confidence 45789999999999999999999999994 8899999887
|
|
| >PRK13886 conjugal transfer protein TraL; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=1.3 Score=47.19 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=31.9
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
++.++|.+.-.|||||++++.|+.+|. ++|++|..+-
T Consensus 2 ~~i~~i~~~KGGvGKSt~a~~la~~l~-----~~g~~vl~iD 38 (241)
T PRK13886 2 AKIHMVLQGKGGVGKSFIAATIAQYKA-----SKGQKPLCID 38 (241)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHH-----hCCCCEEEEE
Confidence 467889999999999999999999994 7788887654
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.069 Score=46.71 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=29.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 40 ~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+.|+|.. |+|||+++..|++.|. +.|++|..++
T Consensus 2 ~~~~g~~-G~Gktt~~~~l~~~l~-----~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKG-GVGKTTLAANLAAALA-----KRGKRVLLID 34 (99)
T ss_pred EEEECCC-CCCHHHHHHHHHHHHH-----HCCCeEEEEC
Confidence 5788887 9999999999999994 7799999998
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >PRK05636 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.48 Score=55.80 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
....+.|.+..+|+|||++++-+++... . +.|++|.+|=
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~~~a---~-~~g~~v~~fS 301 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMRSAS---I-KHNKASVIFS 301 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHH---H-hCCCeEEEEE
Confidence 3467888899999999999999988653 2 5688999884
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.82 E-value=2.7 Score=47.38 Aligned_cols=181 Identities=14% Similarity=0.132 Sum_probs=97.9
Q ss_pred CCcEE-EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecc--ccccccchhhhc---CCCCce----ee
Q 003472 617 SGCIG-ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGF--WRLGVETTADLL---GCVPDI----AC 686 (817)
Q Consensus 617 ~~~iA-AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGf--GRtG~~~a~e~~---gv~PDi----vt 686 (817)
+-+|. .+|+-| +.--|... +++-+..|...+.++++.+|+|||..|- +..+-....+.. ...||- ..
T Consensus 224 ~~kVkGvlitNP--sNPLG~~~-~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivys 300 (471)
T KOG0256|consen 224 GLKVKGVLITNP--SNPLGTTL-SPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYS 300 (471)
T ss_pred CCceeEEEEeCC--CCCCCCcc-CHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEE
Confidence 34565 556665 34446655 7888999999999999999999999763 322111122211 226774 37
Q ss_pred cccccC-CCCCcceEEEec-hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCch-hcHHHHHHHHHHHH
Q 003472 687 YGKLLT-GGVIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTN-HNIIPERRILRELW 763 (817)
Q Consensus 687 lgK~Lg-gGy~PlsAvl~s-~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~-~~l~~~~~~lg~~l 763 (817)
++|=+| -| +-.|++-.. +++..+... -+.|+. ++.-.-.-....+.++.+. .-+.++..+++.+-
T Consensus 301 lSKD~GlpG-fRvGviYS~ne~VvsaA~k---------mssf~~--vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh 368 (471)
T KOG0256|consen 301 LSKDFGLPG-FRVGVIYSNNEDVVSAATK---------MSSFGL--VSSQTQYLLASLLSDEEFTREYLRENNKRLRIRH 368 (471)
T ss_pred eccccCCCc-eEEEEEEecChHHHHHHHH---------HhhccC--CcHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence 899888 47 566666644 344443321 122221 1111111112234343332 22444555554433
Q ss_pred HHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHc
Q 003472 764 DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTT 813 (817)
Q Consensus 764 ~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~ 813 (817)
+ .+.+-+++..+.---++-|++.-++|.+--...+++.--.+..+.+++
T Consensus 369 ~-~~~~gLk~lgI~cl~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~ 417 (471)
T KOG0256|consen 369 R-YIVEGLKALGIPCLKSNAGLFCWVDLRKLLTSLTFEGELELWERILDN 417 (471)
T ss_pred H-HHHhhHHhcCCceeecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHh
Confidence 2 234445555555556889999999997653234444433444444443
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.77 E-value=6.4 Score=44.85 Aligned_cols=205 Identities=10% Similarity=0.075 Sum_probs=119.6
Q ss_pred HHHHHHHhcCCCC-CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc---------
Q 003472 602 SYISQNLLQNPGL-KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--------- 671 (817)
Q Consensus 602 ~~Le~~L~~~~~~-~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~--------- 671 (817)
+.|++.++..... .+..+.-.+-.=|-.|.--|... +.+--++|.+|+++|++++|-||+. +|=..+.
T Consensus 185 E~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tl-s~errk~iy~LArKyDfLIVeDdpY-y~Lq~~~y~~~~~~~~ 262 (472)
T KOG0634|consen 185 ESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTL-SLERRKKIYQLARKYDFLIVEDDPY-YFLQMNTYNPSLELES 262 (472)
T ss_pred HHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCcc-CHHHHHHHHHHHHHcCEEEEecCcc-ceeeccccCCCccccC
Confidence 4566666543111 11122334444565455567766 7888999999999999999999997 4433332
Q ss_pred ------cchhhh------cCCCCcee---ecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHH
Q 003472 672 ------ETTADL------LGCVPDIA---CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAA 736 (817)
Q Consensus 672 ------~~a~e~------~gv~PDiv---tlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAA 736 (817)
.|.-+. .+..--++ +|+|-++-| +=+|-+.+.+-..+.....+ -..|-+.+-++-...
T Consensus 263 p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPG-lRlG~it~~~~~l~ril~~a------e~~t~~pSg~sq~iv 335 (472)
T KOG0634|consen 263 PAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPG-LRLGWITGNSLFLKRILDLA------EVATSGPSGFSQGIV 335 (472)
T ss_pred ccccHHHHHHhhcCCcccccccccEEeccchhhhhcCc-ceeEEeecCHHHHHHHhhhc------ceeecCcccccHHHH
Confidence 111110 12222233 899999999 89999999997777664432 223444455666777
Q ss_pred HHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc-CCC---cceEEeeeeEEEEEEecCCC--CCCc-chHHHHHHH
Q 003472 737 AKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS-HRT---VQRVVALGTLCAIELQAAGC--NAGY-CLIELFLYN 809 (817)
Q Consensus 737 lA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~-~p~---V~~VrG~Glm~gIel~~~~~--~~~~-~~~~~~~~~ 809 (817)
-+.|+..-++++.+-+.+....--++ +..+...+.+ .|. ...+---|+++-|++.-... ..+. +..+.+...
T Consensus 336 ~a~l~~wgqeG~~~wi~~l~~~Yt~R-rn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~ 414 (472)
T KOG0634|consen 336 YAMLKRWGQEGFLRWIQHLRSSYTER-RNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKSINQIEEIIFIK 414 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccccccccchHHHHHHHHHH
Confidence 77887776655544443332221111 1223334433 342 22345579999999961111 1223 466677778
Q ss_pred HHHcCCC
Q 003472 810 FLTTGMH 816 (817)
Q Consensus 810 ~l~~Gv~ 816 (817)
+.++||.
T Consensus 415 ~vk~gV~ 421 (472)
T KOG0634|consen 415 AVKNGVK 421 (472)
T ss_pred HHHCCeE
Confidence 8889985
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=4.2 Score=51.66 Aligned_cols=79 Identities=19% Similarity=0.098 Sum_probs=48.3
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeee---eccccccccchhhhcCCCCceee-----cccc
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF---TGFWRLGVETTADLLGCVPDIAC-----YGKL 690 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~---TGfGRtG~~~a~e~~gv~PDivt-----lgK~ 690 (817)
+++++++ .+ .+..|.+.+ +++|.++|+++|+++++|=.+ +.+=+-|.+ -.||++ +|=.
T Consensus 206 ~~~~vlv-q~-p~~~G~i~d----~~~i~~~ah~~Gal~~vda~~~Al~~l~~pge~--------GaDi~vgs~qkfg~P 271 (954)
T PRK05367 206 DVFGVLL-QY-PGTSGEVRD----YTALIAAAHARGALVAVAADLLALTLLTPPGEM--------GADIAVGSAQRFGVP 271 (954)
T ss_pred cEEEEEE-ec-CCCCeeecc----HHHHHHHHHHcCCEEEEEehhhhccCCCChhhc--------CCCEEEeeCcccCCC
Confidence 5655544 33 456788876 999999999999999999744 322222222 236653 3323
Q ss_pred cCCCCCc-ceEEEechHHHhhhc
Q 003472 691 LTGGVIP-LAATLATNAVFDSFV 712 (817)
Q Consensus 691 LggGy~P-lsAvl~s~~i~d~~~ 712 (817)
+|.| -| .|.+.+++++.+.+.
T Consensus 272 ~g~G-GP~aGflavr~~~~r~lp 293 (954)
T PRK05367 272 MGFG-GPHAAYFAVRDAYKRSMP 293 (954)
T ss_pred CCCC-CCCEEEEEECHHHHhhCC
Confidence 3433 24 455667777766653
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.49 E-value=2.5 Score=49.94 Aligned_cols=275 Identities=13% Similarity=0.029 Sum_probs=158.9
Q ss_pred hHHHHHHHHHHhhcCCCCcceEEE-eCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCcc
Q 003472 443 EPALECAELLLQGVGKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (817)
Q Consensus 443 ~~~~eLae~L~~~~~~~~~~~v~f-~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~ 521 (817)
....+|++.|++++| ++.+.| -|||+..--+.|+.. |.|...+|. +...|....-|-||.--
T Consensus 582 ~lf~~Le~~Lc~iTG---~D~~s~QPNsGA~GEYaGL~~I-RaY~~~kge-------------~hRnvClIPvSAHGTNP 644 (1001)
T KOG2040|consen 582 QLFTELEKDLCEITG---FDSFSLQPNSGAQGEYAGLRVI-RAYLESKGE-------------GHRNVCLIPVSAHGTNP 644 (1001)
T ss_pred HHHHHHHHHhheeec---ccceeecCCCCcccchhhHHHH-HHHHHhccC-------------CcceeEEEeecccCCCh
Confidence 445689999999998 677766 789998888888888 888777654 34467778889999765
Q ss_pred ccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHH
Q 003472 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (817)
Q Consensus 522 galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~ 601 (817)
.+.++.|-.. +|.- +. -+.++| .
T Consensus 645 ASA~Magmkv------------------------------vpV~-~~----------~~G~id----------------~ 667 (1001)
T KOG2040|consen 645 ASAAMAGMKV------------------------------VPVG-CD----------ANGNID----------------M 667 (1001)
T ss_pred hhHHhcCCEE------------------------------EEee-cc----------CCCCcc----------------H
Confidence 5544443211 1100 00 012221 1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeee----eeccccccccch-hh
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV----FTGFWRLGVETT-AD 676 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV----~TGfGRtG~~~a-~e 676 (817)
..|+..-+ ++.++.||++|-= -+.-|+..+ -.+.+.++.++||.-+.+|-+ |.|+.|-|..++ ..
T Consensus 668 ~dLk~kae-----kh~~~Laa~MvTY--PST~GvfE~---~i~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd~GaDV~ 737 (1001)
T KOG2040|consen 668 VDLKAKAE-----KHKDNLAALMVTY--PSTHGVFEE---GIDDICDIIHEHGGQVYLDGANMNAQVGLCRPGDIGADVC 737 (1001)
T ss_pred HHHHHHHH-----HhhhhhheeEEec--ccccccccc---cHHHHHHHHHhcCCEEEecCCCccceecccCCccccccce
Confidence 34444444 4567888877753 244555443 367778888999999999975 779888887554 23
Q ss_pred hcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccc--------ee-ecccCCCCCHHHHHHHHHHHHHhcCcC
Q 003472 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLK--------AL-LHGHSYSAHALGCAAAAKSIKWFKDPQ 747 (817)
Q Consensus 677 ~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~--------~~-~h~~T~~gnPla~AAAlA~L~~l~~~~ 747 (817)
|+++.- ||.=.=|||=--+|-+.+++.++..+.++.-.. ++ ..++.=.|+.+-.....|-++.|-..+
T Consensus 738 HLNLHK---TFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~G 814 (1001)
T KOG2040|consen 738 HLNLHK---TFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGG 814 (1001)
T ss_pred eecccc---eeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhcccc
Confidence 444432 222222332122344567888877776542110 00 111122345555566778888886655
Q ss_pred chhc---HHHHHHHHHHHHHHHHHHHHHcCCCc-ceEEeeeeEEEEEEecCCCCCCc-----chHHHHHHHHHHcCCC
Q 003472 748 TNHN---IIPERRILRELWDLELIQQISSHRTV-QRVVALGTLCAIELQAAGCNAGY-----CLIELFLYNFLTTGMH 816 (817)
Q Consensus 748 l~~~---l~~~~~~lg~~l~~~l~~~l~~~p~V-~~VrG~Glm~gIel~~~~~~~~~-----~~~~~~~~~~l~~Gv~ 816 (817)
+.+. ..-+++++.. +| -..|+++ .+.+| ..+-||.-| .+.| -...-..+++++.|+|
T Consensus 815 L~~as~~AiLNaNYMak----RL---e~hYkil~~~~~~---~vaHEFIlD--~r~fK~~agieavDvAKRL~DYgFH 880 (1001)
T KOG2040|consen 815 LKDASKIAILNANYMAK----RL---ESHYKILFRGENG---LVAHEFILD--LRPFKKTAGIEAVDVAKRLMDYGFH 880 (1001)
T ss_pred cchhhHHHhhhhHHHHH----HH---hhccceeEecCCc---ceeeeeeee--chhhccccCCcHHHHHHHHHhccCC
Confidence 5433 1223333332 22 1244543 23333 667777554 2333 3445677888898887
|
|
| >PRK05595 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.57 Score=54.40 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
....+.|.|..+|+|||++++-++..+. . ++|.+|.+|=
T Consensus 199 ~~g~liviaarpg~GKT~~al~ia~~~a---~-~~g~~vl~fS 237 (444)
T PRK05595 199 QKGDMILIAARPSMGKTTFALNIAEYAA---L-REGKSVAIFS 237 (444)
T ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHH---H-HcCCcEEEEe
Confidence 3467889999999999999999998642 1 5699999995
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.51 Score=46.29 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=27.6
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 40 ~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+.+.|. .|+|||+++..|...+. ++|.++..+.
T Consensus 2 i~~~G~-~GsGKTt~~~~l~~~~~-----~~g~~v~ii~ 34 (148)
T cd03114 2 IGITGV-PGAGKSTLIDALITALR-----ARGKRVAVLA 34 (148)
T ss_pred EEEECC-CCCcHHHHHHHHHHHHH-----HCCCEEEEEE
Confidence 456666 79999999999999994 7788888776
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >PHA02542 41 41 helicase; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.86 Score=53.29 Aligned_cols=37 Identities=22% Similarity=0.445 Sum_probs=32.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
...+.|.+..+|+|||++++-++.... +.|++|.+|=
T Consensus 189 ~G~LiiIaarPgmGKTtfalniA~~~a-----~~g~~Vl~fS 225 (473)
T PHA02542 189 RKTLNVLLAGVNVGKSLGLCSLAADYL-----QQGYNVLYIS 225 (473)
T ss_pred CCcEEEEEcCCCccHHHHHHHHHHHHH-----hcCCcEEEEe
Confidence 457899999999999999999998873 6799999995
|
|
| >KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.21 Score=55.13 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
-|+++|.|. +++||||+|..|+.+.. |+|+++.|.-
T Consensus 103 GPrv~vVGp-~d~GKsTl~r~L~nyav-----k~gr~Plfv~ 138 (415)
T KOG2749|consen 103 GPRVMVVGP-TDVGKSTLCRILLNYAV-----KQGRRPLFVE 138 (415)
T ss_pred CCEEEEECC-CccchHHHHHHHHHHHH-----HcCCcceEEE
Confidence 478999997 89999999999999985 7899888876
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=93.26 E-value=2.2 Score=48.41 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=28.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCC-CceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSAN-KKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g-~~v~~~K 78 (817)
....+.+.|. ||+||||+.+.|+..+. . +.| .+|.++-
T Consensus 136 ~g~ii~lvGp-tGvGKTTtiakLA~~~~---~-~~G~~~V~lit 174 (374)
T PRK14722 136 RGGVFALMGP-TGVGKTTTTAKLAARCV---M-RFGASKVALLT 174 (374)
T ss_pred CCcEEEEECC-CCCCHHHHHHHHHHHHH---H-hcCCCeEEEEe
Confidence 3467788887 89999999999998763 2 445 5676654
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.26 E-value=4.5 Score=45.73 Aligned_cols=152 Identities=14% Similarity=0.149 Sum_probs=87.9
Q ss_pred HHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeec--ccccCC-CCCcceEEEechHHHhhhcCCCc-cce----e
Q 003472 649 ECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTG-GVIPLAATLATNAVFDSFVGDSK-LKA----L 720 (817)
Q Consensus 649 Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~Lgg-Gy~PlsAvl~s~~i~d~~~~~~~-~~~----~ 720 (817)
+.+.+++++|+|=+=+ + .+.-+-.+.| |++.. =|+||- | ++.++++++..+....... ... .
T Consensus 163 ~~~~~~~llvvD~sS~-~--~s~pid~~~~----dvi~agsQKnlgP~G---ltvvivs~~al~~~~~~~p~~ldy~~~~ 232 (364)
T PRK12462 163 AAGLPDSPLIADMSSD-F--MSRPFDVEAY----GMVYAHAQKNLGPAG---VTVAIIRRALLERVPDTLPPMLDFRTHV 232 (364)
T ss_pred ccccCCCeEEEEcCch-h--hCCCCChHHc----cEEEeeccccCCCCc---eEEEEECHHHHhhccccCCchhhHHHHH
Confidence 3444799999998764 4 2333444444 77754 488873 5 5778899998876543110 000 0
Q ss_pred ecccCCC-CCHHHHHHHHHHHHHhcCc-CchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeE-EEEEEecCCCC
Q 003472 721 LHGHSYS-AHALGCAAAAKSIKWFKDP-QTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL-CAIELQAAGCN 797 (817)
Q Consensus 721 ~h~~T~~-gnPla~AAAlA~L~~l~~~-~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm-~gIel~~~~~~ 797 (817)
-..+||. -+-...-+...+|++|.++ +-.+++.++.++..+.+.+.+.+.-.=+..+.+-.-+-.| +.+.+.++
T Consensus 233 ~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~~~--- 309 (364)
T PRK12462 233 EHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARSTMNVAFRFRQP--- 309 (364)
T ss_pred hcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCcceEEEEcCCH---
Confidence 0235654 3445556677899999776 3346677777777775555332221012223333333333 22333333
Q ss_pred CCcchHHHHHHHHHHcCCC
Q 003472 798 AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 798 ~~~~~~~~~~~~~l~~Gv~ 816 (817)
+....|+..+.++|+.
T Consensus 310 ---~l~~~f~~~a~~~gl~ 325 (364)
T PRK12462 310 ---RLDTLFKEQSTEAGFC 325 (364)
T ss_pred ---HHHHHHHHHHHHCCCc
Confidence 6889999999999985
|
|
| >PRK08760 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.75 Score=53.86 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
...+.|.+..+|+|||++++-++.... . +.|.+|.+|=
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a---~-~~g~~V~~fS 265 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAA---I-KSKKGVAVFS 265 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHH---H-hcCCceEEEe
Confidence 467889999999999999999998663 2 5588999995
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=93.09 E-value=3.7 Score=46.65 Aligned_cols=174 Identities=10% Similarity=0.101 Sum_probs=92.4
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHhh-cCCcEEEeeeeeccccccccchhhhcCCCCceeec--ccccCC--C
Q 003472 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQN-RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTG--G 694 (817)
Q Consensus 620 iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~-~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~Lgg--G 694 (817)
+..+-.|.. .|+..| + .+++++ +++++|+|=|=+ +| |.-+-.+ .-|+++. -|+|++ |
T Consensus 131 v~~vhnETS----TGv~np----v---~~i~~~~~~~lliVDavSs-~g--~~~l~~d----~iDv~~tgsQK~L~~ppG 192 (374)
T TIGR01365 131 VVFTWNGTT----SGVRVP----N---GDFIPADREGLTICDATSA-AF--AQDLDYH----KLDVVTFSWQKVLGGEGA 192 (374)
T ss_pred EEEecCCCc----hheecc----c---cccccccCCCcEEEEccch-hc--CCCCChh----HCcEEEEechhccCCCCc
Confidence 555555653 456655 2 344444 589999998764 53 3333333 2687754 599986 6
Q ss_pred CCcceEEEechHHHhhhcCCCcc----c--e----------eecccCCCC-CHHHHHHHHHHHHHhcCcCchhcHHHHHH
Q 003472 695 VIPLAATLATNAVFDSFVGDSKL----K--A----------LLHGHSYSA-HALGCAAAAKSIKWFKDPQTNHNIIPERR 757 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~----~--~----------~~h~~T~~g-nPla~AAAlA~L~~l~~~~l~~~l~~~~~ 757 (817)
+|.++.+++..+........ . . ...++|..- +-.+.-+++.+|+++++++-.++..++-+
T Consensus 193 ---ls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~ 269 (374)
T TIGR01365 193 ---HGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARAD 269 (374)
T ss_pred ---eEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 57788999988765421100 0 0 001234333 33444556677777766533466667777
Q ss_pred HHHHHHHHHHHHHHHcCCCcc--eEEeeeeEEEEEEecCCC-----CCCcchHHHHHHHHHHcCC
Q 003472 758 ILRELWDLELIQQISSHRTVQ--RVVALGTLCAIELQAAGC-----NAGYCLIELFLYNFLTTGM 815 (817)
Q Consensus 758 ~lg~~l~~~l~~~l~~~p~V~--~VrG~Glm~gIel~~~~~-----~~~~~~~~~~~~~~l~~Gv 815 (817)
++.+.+++.+.++---..... ..|. -.+.++.+..++- +..++....|...+.++||
T Consensus 270 ~~a~~l~~~l~~lg~l~~~~~~~~~rS-~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi 333 (374)
T TIGR01365 270 DNLAVLEAFVAKNNWIHFLAETPEIRS-NTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGV 333 (374)
T ss_pred HHHHHHHHHHHHCCCcccCCCChhhcC-CCeEEEEeCCccccccccchhhHHHHHHHHHHHHCCE
Confidence 777766654433210112221 2343 3334555533210 1122335667777778885
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PRK08506 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=93.01 E-value=1.2 Score=52.07 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=32.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
...++|.|..+|+|||++++-++.... ++|.+|.+|=
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~-----~~g~~V~~fS 227 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKAL-----NQDKGVAFFS 227 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHH-----hcCCcEEEEe
Confidence 467999999999999999999998874 6799999994
|
|
| >TIGR00665 DnaB replicative DNA helicase | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.98 Score=52.14 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=31.2
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
...+.|.+..+|+|||++++-++..+. . +.|.+|.||=
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a---~-~~g~~vl~~S 231 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAA---I-KEGKPVAFFS 231 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHH---H-hCCCeEEEEe
Confidence 456889999999999999999987753 2 4688999995
|
This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. |
| >PRK08006 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.76 Score=53.72 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=38.8
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhC
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKL 97 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~ 97 (817)
....+.|.|..+++|||++++-++.... . ++|++|.+|= .+.+..+.+.+..
T Consensus 222 ~~G~LiiIaarPgmGKTafalnia~~~a---~-~~g~~V~~fS------lEM~~~ql~~Rll 273 (471)
T PRK08006 222 QPSDLIIVAARPSMGKTTFAMNLCENAA---M-LQDKPVLIFS------LEMPGEQIMMRML 273 (471)
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH---H-hcCCeEEEEe------ccCCHHHHHHHHH
Confidence 4578999999999999999999987763 2 5688999995 2334445555554
|
|
| >PRK09165 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.68 E-value=1 Score=52.98 Aligned_cols=61 Identities=11% Similarity=0.025 Sum_probs=41.0
Q ss_pred CCChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCC---CC---------CchhhHhhhCCCCEEEEEc
Q 003472 191 VVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGP---SG---------SLQCDLYRPFRLPGILVGD 258 (817)
Q Consensus 191 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~---~~---------~~~~~la~~l~~pvilV~~ 258 (817)
.++..+|+..++++.++ .+.|+|||---+-+..+.. .. ...-.+|+.+++|||+++.
T Consensus 323 ~~ti~~i~~~ir~l~~~-----------~~~~lvvIDyLqli~~~~~~~~~~r~~ev~~is~~LK~lAkel~ipVi~lsQ 391 (497)
T PRK09165 323 ALSISQLRARARRLKRQ-----------HGLDLLVVDYLQLIRGSSKRSSDNRVQEISEITQGLKALAKELNIPVIALSQ 391 (497)
T ss_pred CCCHHHHHHHHHHHHHh-----------cCCCEEEEcchHhccCCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEeec
Confidence 46778888888876544 3478999988765544432 11 1225678889999999887
Q ss_pred CCCC
Q 003472 259 GRLG 262 (817)
Q Consensus 259 ~~~g 262 (817)
-.++
T Consensus 392 LnR~ 395 (497)
T PRK09165 392 LSRQ 395 (497)
T ss_pred ccch
Confidence 5443
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=92.67 E-value=3 Score=48.81 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=27.8
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCC-CceeEE
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSAN-KKFVYL 77 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g-~~v~~~ 77 (817)
...+.+.|. +||||||..+.|+..+. . ++| ++|...
T Consensus 256 g~Vi~LvGp-nGvGKTTTiaKLA~~~~---~-~~G~~kV~LI 292 (484)
T PRK06995 256 GGVFALMGP-TGVGKTTTTAKLAARCV---M-RHGASKVALL 292 (484)
T ss_pred CcEEEEECC-CCccHHHHHHHHHHHHH---H-hcCCCeEEEE
Confidence 368889998 89999999999998884 2 445 467643
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=92.43 E-value=5.2 Score=41.23 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=29.9
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
.+.+.|+|. .|+||||+...|++.+ ..+.+++..+
T Consensus 22 ~~~i~~~G~-~gsGKTTli~~l~~~~------~~~~~v~v~~ 56 (207)
T TIGR00073 22 LVVLNFMSS-PGSGKTTLIEKLIDNL------KDEVKIAVIE 56 (207)
T ss_pred cEEEEEECC-CCCCHHHHHHHHHHHH------hcCCeEEEEE
Confidence 568888887 8999999999999987 4467899888
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >PRK06904 replicative DNA helicase; Validated | Back alignment and domain information |
|---|
Probab=92.38 E-value=1.2 Score=52.13 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=38.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhC
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKL 97 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~ 97 (817)
....++|.|..+|+|||++++-+++... . +.|..|.+|= .+.+..+.+.+..
T Consensus 219 ~~G~LiiIaarPg~GKTafalnia~~~a---~-~~g~~Vl~fS------lEMs~~ql~~Rll 270 (472)
T PRK06904 219 QPSDLIIVAARPSMGKTTFAMNLCENAA---M-ASEKPVLVFS------LEMPAEQIMMRML 270 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHH---H-hcCCeEEEEe------ccCCHHHHHHHHH
Confidence 4567999999999999999999988663 1 4688999985 2344445555544
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=92.38 E-value=1.1 Score=50.93 Aligned_cols=80 Identities=19% Similarity=0.150 Sum_probs=46.2
Q ss_pred CCEEEEeCCCCCCCCCCCCCchhhHhhh----CCCCEEEEEcCCCC--hHHHHHHHHHHHHhCCCcEEEEEEccCCC---
Q 003472 221 EILCIVETAGGVASPGPSGSLQCDLYRP----FRLPGILVGDGRLG--GISGTISAYESLKLRGYDVVAVVFEDHGL--- 291 (817)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~~la~~----l~~pvilV~~~~~g--~i~~~~~~~~~l~~~~~~v~gvi~n~~~~--- 291 (817)
+|+|+|.++| .++.+. ....++... ..+.+.||.+...- .+-++ ++.+ +-+++.|+||.+.++
T Consensus 282 ~d~ILVDTaG--rs~~D~-~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei---~~~f--~~~~i~~~I~TKlDET~s 353 (407)
T COG1419 282 CDVILVDTAG--RSQYDK-EKIEELKELIDVSHSIEVYLVLSATTKYEDLKEI---IKQF--SLFPIDGLIFTKLDETTS 353 (407)
T ss_pred CCEEEEeCCC--CCccCH-HHHHHHHHHHhccccceEEEEEecCcchHHHHHH---HHHh--ccCCcceeEEEcccccCc
Confidence 8999999999 344321 222222222 46678888884321 12222 2222 346899999999833
Q ss_pred -CCHHHHHHhhcCCCcEEec
Q 003472 292 -VNEVPLMSYLRNRVPVLVL 310 (817)
Q Consensus 292 -~~~~~l~~~~~~~~pvlgi 310 (817)
.+.-.+.... ++||.-+
T Consensus 354 ~G~~~s~~~e~--~~PV~Yv 371 (407)
T COG1419 354 LGNLFSLMYET--RLPVSYV 371 (407)
T ss_pred hhHHHHHHHHh--CCCeEEE
Confidence 3444455555 7887543
|
|
| >TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily | Back alignment and domain information |
|---|
Probab=91.96 E-value=2 Score=49.50 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
....+.|.+..+|+|||++++-++..+. . +.|.+|.||=
T Consensus 192 ~~g~liviag~pg~GKT~~al~ia~~~a---~-~~g~~v~~fS 230 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTLALNIAENVA---L-REGKPVLFFS 230 (421)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHH---H-hCCCcEEEEE
Confidence 3567899999999999999999997662 2 5689999995
|
Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. |
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.19 Score=50.96 Aligned_cols=36 Identities=8% Similarity=0.303 Sum_probs=29.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
.+.+++.|. +|+|||.++.+++..+. ++|++|.|++
T Consensus 47 ~~~l~l~G~-~G~GKThLa~ai~~~~~-----~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGP-PGTGKTHLAVAIANEAI-----RKGYSVLFIT 82 (178)
T ss_dssp --EEEEEES-TTSSHHHHHHHHHHHHH-----HTT--EEEEE
T ss_pred CeEEEEEhh-HhHHHHHHHHHHHHHhc-----cCCcceeEee
Confidence 468999996 89999999999999885 7899999998
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >PRK06749 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=91.83 E-value=1.6 Score=50.53 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=38.0
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhC
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKL 97 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~ 97 (817)
...+.|.|..+++|||++++-+++... ++|++|.+|= .+.+..+.+.+..
T Consensus 185 ~G~LiiIaarPgmGKTafal~ia~~~a-----~~g~~v~~fS------lEMs~~ql~~R~l 234 (428)
T PRK06749 185 EGDFVVLGARPSMGKTAFALNVGLHAA-----KSGAAVGLFS------LEMSSKQLLKRMA 234 (428)
T ss_pred CCcEEEEEeCCCCCchHHHHHHHHHHH-----hcCCCEEEEE------eeCCHHHHHHHHH
Confidence 467999999999999999999998884 6688999994 2334445555543
|
|
| >PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.24 Score=54.52 Aligned_cols=38 Identities=32% Similarity=0.175 Sum_probs=34.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC
Q 003472 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (817)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~ 289 (817)
-+++|+....-.+..+--.++.|+..|+++.+||+|++
T Consensus 209 ~~~lV~~pE~l~i~Et~r~~~~L~~~gi~v~~vVvNrv 246 (305)
T PF02374_consen 209 SFRLVTNPEPLAIAETERLLTELKLYGIPVDAVVVNRV 246 (305)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEEEE
T ss_pred EEEEEecCCcchHHHHHHHHHHHHhcCCccCeEEEEcc
Confidence 47999999999999999999999999999999999998
|
... |
| >PRK05748 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=91.06 E-value=2.3 Score=49.45 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
....+.|.|..+|+|||++++-++.... . +.|.+|.+|=
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a---~-~~g~~v~~fS 239 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVA---T-KTDKNVAIFS 239 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHH---H-hCCCeEEEEe
Confidence 3457889999999999999999988753 2 5689999984
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=91.00 E-value=14 Score=47.02 Aligned_cols=68 Identities=15% Similarity=0.101 Sum_probs=40.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhccccCCCC-----CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHH
Q 003472 412 GPDATLQIELARDMGYTAARFGHVMFPE-----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKM 480 (817)
Q Consensus 412 ~LGh~~hP~V~~Ai~~q~~~~~~~~~~~-----~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alkl 480 (817)
+.+|-.++.|.+++.+..+-+..++... +.-+...++-..+++++|-. ...+.+..+++.+.|+++..
T Consensus 112 ~y~~~~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~-~anaSL~d~aTAaaea~~~a 184 (993)
T PLN02414 112 YYNTHVPPVILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLTGLP-MSNASLLDEGTAAAEAMAMC 184 (993)
T ss_pred CCCccCCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCC-hhhEeecCChHHHHHHHHHH
Confidence 3444414555588887665444322111 11233456777788888743 34688999999999966643
|
|
| >PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork | Back alignment and domain information |
|---|
Probab=90.90 E-value=1 Score=48.19 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
...++|.|..+|+|||++++-++..+. . +.|.+|.||=
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a---~-~~~~~vly~S 55 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAA---L-NGGYPVLYFS 55 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHH---H-TTSSEEEEEE
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHH---H-hcCCeEEEEc
Confidence 357899999999999999999999885 2 3479999997
|
Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C .... |
| >PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.84 Score=48.56 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=28.0
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 39 ~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
.|.|.+--.|+||||+|.-|+-+|. ++|+||+.+-
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa-----~~G~kVg~lD 36 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALA-----RMGKKVGLLD 36 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHH-----CTT--EEEEE
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 3567777789999999999999995 8999999887
|
Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A. |
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=90.46 E-value=1.7 Score=44.66 Aligned_cols=47 Identities=15% Similarity=0.079 Sum_probs=32.1
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCC-CCCCcHHHHHH
Q 003472 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGY-PHDSDSRFLFT 95 (817)
Q Consensus 38 ~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~-~~~~d~~~~~~ 95 (817)
..+=|.| ..|+|||++...+++.|+ +.++++..+ +- -...|+.++.+
T Consensus 14 ~~i~v~G-p~GSGKTaLie~~~~~L~------~~~~~aVI~----~Di~t~~Da~~l~~ 61 (202)
T COG0378 14 LRIGVGG-PPGSGKTALIEKTLRALK------DEYKIAVIT----GDIYTKEDADRLRK 61 (202)
T ss_pred EEEEecC-CCCcCHHHHHHHHHHHHH------hhCCeEEEe----ceeechhhHHHHHh
Confidence 3444444 489999999999999993 348888877 21 12356565555
|
|
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=90.39 E-value=0.36 Score=48.78 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
.++.+.|+|. +|+||||+...|++.|. .+|++|+..|
T Consensus 5 ~~~ii~ivG~-sgsGKTTLi~~li~~l~-----~~g~~vg~Ik 41 (173)
T PRK10751 5 MIPLLAIAAW-SGTGKTTLLKKLIPALC-----ARGIRPGLIK 41 (173)
T ss_pred CceEEEEECC-CCChHHHHHHHHHHHHh-----hcCCeEEEEE
Confidence 3567788885 99999999999999993 7799999999
|
|
| >PRK08840 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=90.37 E-value=2 Score=50.20 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=38.7
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhC
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKL 97 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~ 97 (817)
....++|.|..+|+|||++++-+++... . ++|+.|.+|= -+.+..+.+.+..
T Consensus 215 ~~g~LiviaarPg~GKTafalnia~~~a---~-~~~~~v~~fS------lEMs~~ql~~Rll 266 (464)
T PRK08840 215 QGSDLIIVAARPSMGKTTFAMNLCENAA---M-DQDKPVLIFS------LEMPAEQLMMRML 266 (464)
T ss_pred CCCceEEEEeCCCCchHHHHHHHHHHHH---H-hCCCeEEEEe------ccCCHHHHHHHHH
Confidence 4578999999999999999999988763 2 4688999995 2344445555543
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.36 Score=53.93 Aligned_cols=95 Identities=18% Similarity=0.256 Sum_probs=53.9
Q ss_pred HHHHHHHHhhcCCcEEEeeeee------ccccccccchhhhcCCCCceeecc--cccCCCCCcceEEEechHHHhhhcCC
Q 003472 643 QRILVKECQNRKIPVIFDEVFT------GFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGD 714 (817)
Q Consensus 643 l~~Lr~Lc~~~GilLI~DEV~T------GfGRtG~~~a~e~~gv~PDivtlg--K~LggGy~PlsAvl~s~~i~d~~~~~ 714 (817)
++++.+++++|++++|.|=--- -+|-.++.-..+...--.|++||| |.|||= --|.+++++++++.+..+
T Consensus 159 ~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGP--QaGiI~Gkk~lI~~lk~~ 236 (367)
T PF03841_consen 159 LEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGP--QAGIIVGKKELIEKLKKH 236 (367)
T ss_dssp --HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS---S-EEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCC--CeEEEEeCHHHHHHHhhC
Confidence 8999999999999999996431 112222333333344458999994 778772 235688999999988643
Q ss_pred CccceeecccCCCCCHHHHHHHHHHHHHhcC
Q 003472 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKD 745 (817)
Q Consensus 715 ~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~ 745 (817)
. .+-.+--+-+..|+-.++|+.+.+
T Consensus 237 p------l~RalrvdK~tla~L~atL~~Y~~ 261 (367)
T PF03841_consen 237 P------LGRALRVDKLTLAALEATLRLYLD 261 (367)
T ss_dssp H------HTTT-B--HHHHHHHHHHHHH---
T ss_pred C------CcceEeeCHHHHHHHHHHHHHHHH
Confidence 1 334555678999999999998754
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=90.11 E-value=5.5 Score=41.06 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 003472 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (817)
Q Consensus 39 ~~~i~gt~t~~GKT~vs~~L~~~l 62 (817)
.+-|+|. .|+||||+...|++.+
T Consensus 3 ~i~i~G~-~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 3 KIGVAGP-VGSGKTALIEALTRAL 25 (199)
T ss_pred EEEEECC-CCCCHHHHHHHHHHhh
Confidence 3556665 8999999999999998
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PRK10037 cell division protein; Provisional | Back alignment and domain information |
|---|
Probab=90.00 E-value=0.39 Score=51.06 Aligned_cols=37 Identities=14% Similarity=0.221 Sum_probs=33.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
|+.|-|.+.-.||||||++..|+.+|. ++|+||...=
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La-----~~G~rVLlID 37 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQ-----MLGENVLVID 37 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHH-----hcCCcEEEEe
Confidence 678999999999999999999999994 8899988764
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=89.95 E-value=0.37 Score=51.58 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
|..++|+|. .|+||||++..+..++. ++|++|..+.
T Consensus 2 ~~~i~v~G~-~G~GKTt~~~~~~~~l~-----~~g~~v~~i~ 37 (253)
T PRK13768 2 MYIVFFLGT-AGSGKTTLTKALSDWLE-----EQGYDVAIVN 37 (253)
T ss_pred cEEEEEECC-CCccHHHHHHHHHHHHH-----hcCCceEEEE
Confidence 457888898 99999999999999994 7799988876
|
|
| >PRK07004 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=89.86 E-value=2.4 Score=49.51 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=37.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhC
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKL 97 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~ 97 (817)
...+.|.+..+|+|||++++-++.... . +.|+.|.+|= -+.+..+.+.+.+
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a---~-~~~~~v~~fS------lEM~~~ql~~R~l 262 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVA---V-EYGLPVAVFS------MEMPGTQLAMRML 262 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHH---H-HcCCeEEEEe------CCCCHHHHHHHHH
Confidence 467899999999999999999987652 1 5688999994 2344445555553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 817 | ||||
| 4a0g_A | 831 | Structure Of Bifunctional Dapa Aminotransferase-Dtb | 0.0 | ||
| 4a0f_A | 831 | Structure Of Selenomethionine Substituted Bifunctio | 0.0 | ||
| 3tft_A | 457 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 2e-27 | ||
| 3du4_A | 448 | Crystal Structure Of 7-Keto-8-Aminopelargonic Acid | 3e-27 | ||
| 3dod_A | 448 | Crystal Structure Of Plp Bound 7,8-diaminopelargoni | 3e-27 | ||
| 3lv2_A | 462 | Crystal Structure Of Mycobacterium Tuberculosis 7,8 | 1e-26 | ||
| 3bv0_A | 437 | Crystal Structure Of Plp Bound 7,8-Diaminopelargoni | 1e-26 | ||
| 1dty_A | 429 | Crystal Structure Of Adenosylmethionine-8-Amino-7-O | 9e-25 | ||
| 1qj3_A | 429 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 1e-23 | ||
| 1mgv_A | 429 | Crystal Structure Of The R391a Mutant Of 7,8-Diamin | 1e-23 | ||
| 1s0a_A | 429 | Crystal Structure Of The Y17f Mutant Of 7,8- Diamin | 6e-23 | ||
| 1s07_A | 429 | Crystal Structure Of The R253a Mutant Of 7,8-Diamin | 9e-23 | ||
| 1s06_A | 429 | Crystal Structure Of The R253k Mutant Of 7,8- Diami | 2e-22 | ||
| 1s09_A | 429 | Crystal Structure Of The Y144f Mutant Of 7,8- Diami | 2e-22 | ||
| 1s08_A | 429 | Crystal Structure Of The D147n Mutant Of 7,8- Diami | 2e-22 | ||
| 1szk_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 5e-15 | ||
| 1szs_A | 426 | The Structure Of Gamma-aminobutyrate Aminotransfera | 9e-15 | ||
| 1sf2_A | 426 | Structure Of E. Coli Gamma-Aminobutyrate Aminotrans | 9e-15 | ||
| 1szu_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 3e-14 | ||
| 2eo5_A | 419 | Crystal Structure Of 4-Aminobutyrate Aminotransfera | 7e-13 | ||
| 3a8u_X | 449 | Crystal Structure Of Omega-Amino Acid:pyruvate Amin | 2e-12 | ||
| 3n5m_A | 452 | Crystals Structure Of A Bacillus Anthracis Aminotra | 9e-12 | ||
| 3gju_A | 459 | Crystal Structure Of A Putative Aminotransferase (M | 2e-10 | ||
| 3lg0_A | 422 | Structure Of Plasmodium Falciparum Ornithine Delta- | 3e-10 | ||
| 3fcr_A | 459 | Crystal Structure Of Putative Aminotransferase (Yp_ | 9e-10 | ||
| 3i4j_A | 430 | Crystal Structure Of Aminotransferase, Class Iii Fr | 2e-09 | ||
| 2can_A | 402 | Human Ornithine Aminotransferase Complexed With L-C | 7e-09 | ||
| 3i5t_A | 476 | Crystal Structure Of Aminotransferase Prk07036 From | 7e-09 | ||
| 1vef_A | 395 | Acetylornithine Aminotransferase From Thermus Therm | 8e-09 | ||
| 1oat_A | 439 | Ornithine Aminotransferase Length = 439 | 9e-09 | ||
| 2byj_A | 439 | Ornithine Aminotransferase Mutant Y85i Length = 439 | 1e-08 | ||
| 2pb0_A | 420 | Structure Of Biosynthetic N-Acetylornithine Aminotr | 2e-08 | ||
| 4adb_A | 406 | Structural And Functional Study Of Succinyl-ornithi | 3e-08 | ||
| 3hmu_A | 472 | Crystal Structure Of A Class Iii Aminotransferase F | 3e-08 | ||
| 3nui_A | 478 | Crystal Structure Of Omega-Transferase From Vibrio | 5e-08 | ||
| 4e3r_A | 473 | Plp-Bound Aminotransferase Mutant Crystal Structure | 5e-08 | ||
| 2eh6_A | 375 | Crystal Structure Of Acetylornithine Aminotransfera | 6e-08 | ||
| 4a6r_A | 459 | Crystal Structure Of The Omega Transaminase From Ch | 1e-07 | ||
| 2byl_A | 439 | Structure Of Ornithine Aminotransferase Triple Muta | 1e-07 | ||
| 1z7d_A | 433 | Ornithine Aminotransferase Py00104 From Plasmodium | 4e-07 | ||
| 4e3q_A | 473 | Pmp-Bound Form Of Aminotransferase Crystal Structur | 5e-07 | ||
| 2e7u_A | 424 | Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A | 2e-06 | ||
| 3q8n_A | 453 | Crystal Structure Of 4-Aminobutyrate Transaminase F | 3e-06 | ||
| 4grx_A | 465 | Structure Of An Omega-Aminotransferase From Paracoc | 3e-06 | ||
| 3ruy_A | 392 | Crystal Structure Of The Ornithine-Oxo Acid Transam | 5e-06 | ||
| 1m0n_A | 433 | Structure Of Dialkylglycine Decarboxylase Complexed | 1e-05 | ||
| 1z3z_A | 431 | The Crystal Structure Of A Dgd Mutant: Q52a Length | 1e-05 | ||
| 1d7r_A | 433 | Crystal Structure Of The Complex Of 2,2-Dialkylglyc | 1e-05 | ||
| 1dgd_A | 432 | An Alkali Metal Ion Size-Dependent Switch In The Ac | 1e-05 | ||
| 3oks_A | 451 | Crystal Structure Of 4-Aminobutyrate Transaminase F | 2e-05 | ||
| 3nx3_A | 395 | Crystal Structure Of Acetylornithine Aminotransfera | 6e-05 | ||
| 4ffc_A | 453 | Crystal Structure Of A 4-Aminobutyrate Aminotransfe | 7e-05 | ||
| 3bs8_A | 438 | Crystal Structure Of Glutamate 1-Semialdehyde Amino | 9e-05 | ||
| 3r4t_A | 467 | Crystal Structure Of 4-Aminobutyrate Aminotransfera | 1e-04 | ||
| 2epj_A | 434 | Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A | 1e-04 | ||
| 2e54_A | 385 | Crystal Structure Of Acetylornithine Aminotransfera | 4e-04 | ||
| 2ord_A | 397 | Crystal Structure Of Acetylornithine Aminotransfera | 7e-04 |
| >pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831 | Back alignment and structure |
|
| >pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional Dapa Aminotransferase-Dethiobiotin Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831 | Back alignment and structure |
|
| >pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase (Bioa) From Mycobacterium Tuberculosis, Pre-Reaction Complex With A 3,6- Dihydropyrid-2-One Heterocycle Inhibitor Length = 457 | Back alignment and structure |
|
| >pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound 7,8- Diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
| >pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
| >pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis 7,8-Diaminopelargonic Acid Synthase In Complex With Substrate Analog Sinefungin Length = 462 | Back alignment and structure |
|
| >pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid Synthase In Mycobacterium Tuberculosis Length = 437 | Back alignment and structure |
|
| >pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase With Pyridoxal Phosphate Cofactor. Length = 429 | Back alignment and structure |
|
| >pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase In Complex With 7-Keto-8-Aminopelargonic Acid Length = 429 | Back alignment and structure |
|
| >pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: E211s Length = 426 | Back alignment and structure |
|
| >pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase Mutant: I50q Length = 426 | Back alignment and structure |
|
| >pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase Length = 426 | Back alignment and structure |
|
| >pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: V241a Length = 426 | Back alignment and structure |
|
| >pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From Sulfolobus Tokodaii Strain7 Length = 419 | Back alignment and structure |
|
| >pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate Aminotransferase Length = 449 | Back alignment and structure |
|
| >pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452 | Back alignment and structure |
|
| >pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422 | Back alignment and structure |
|
| >pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From Deinococcus Radiodurans Length = 430 | Back alignment and structure |
|
| >pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline Length = 402 | Back alignment and structure |
|
| >pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From Rhodobacter Sphaeroides Kd131 Length = 476 | Back alignment and structure |
|
| >pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus Hb8 Length = 395 | Back alignment and structure |
|
| >pdb|1OAT|A Chain A, Ornithine Aminotransferase Length = 439 | Back alignment and structure |
|
| >pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i Length = 439 | Back alignment and structure |
|
| >pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine Aminotransferase From Salmonella Typhimurium: Studies On Substrate Specificity And Inhibitor Binding Length = 420 | Back alignment and structure |
|
| >pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine Transaminase From E. Coli Length = 406 | Back alignment and structure |
|
| >pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From Silicibacter Pomeroyi Length = 472 | Back alignment and structure |
|
| >pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio Fluvialis Js17 Length = 478 | Back alignment and structure |
|
| >pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From Vibrio Fluvialis Length = 473 | Back alignment and structure |
|
| >pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Aquifex Aeolicus Vf5 Length = 375 | Back alignment and structure |
|
| >pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From Chromobacterium Violaceum In The Apo Form, Crystallised From Polyacrylic Acid Length = 459 | Back alignment and structure |
|
| >pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i Y55a G320f Length = 439 | Back alignment and structure |
|
| >pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433 | Back alignment and structure |
|
| >pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From Vibrio Fluvialis Length = 473 | Back alignment and structure |
|
| >pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus Hb8 Length = 424 | Back alignment and structure |
|
| >pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 453 | Back alignment and structure |
|
| >pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus Denitrificans Length = 465 | Back alignment and structure |
|
| >pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase Rocd From Bacillus Anthracis Length = 392 | Back alignment and structure |
|
| >pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433 | Back alignment and structure |
|
| >pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431 | Back alignment and structure |
|
| >pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433 | Back alignment and structure |
|
| >pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432 | Back alignment and structure |
|
| >pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 451 | Back alignment and structure |
|
| >pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Argd) From Campylobacter Jejuni Length = 395 | Back alignment and structure |
|
| >pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase (Gabt) From Mycobacterium Abscessus Length = 453 | Back alignment and structure |
|
| >pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde Aminotransferase Complexed With Pyridoxamine-5'-Phosphate From Bacillus Subtilis Length = 438 | Back alignment and structure |
|
| >pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound To Pyridoxal Phosphate Length = 467 | Back alignment and structure |
|
| >pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Aeropyrum Pernix Length = 434 | Back alignment and structure |
|
| >pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Thermotoga Maritima Length = 385 | Back alignment and structure |
|
| >pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec 2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At 1.40 A Resolution Length = 397 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831 | Back alignment and structure |
|---|
Score = 774 bits (1999), Expect = 0.0
Identities = 529/794 (66%), Positives = 620/794 (78%), Gaps = 22/794 (2%)
Query: 7 HHYPDHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSP 66
HH+ H ++ R H + P LPL+HPT+ IWSANTSLGKTLVS G+++SFLL
Sbjct: 4 HHHHHHSSGLVPRGSHMKSTSVSPFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQ 63
Query: 67 TSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKS 126
SS+ K +YLKPIQTG+P DSDSRF+F+KL SLSLRR P S + S
Sbjct: 64 PSSSATKLLYLKPIQTGFPSDSDSRFVFSKLDSLSLRRQIPIS-------------ISNS 110
Query: 127 FLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAER 186
L S + N E+ + N + + EL+CKTL+AWE A+SPHLAAER
Sbjct: 111 VLHSSLPAAKSLGLNVEVSESGMCSLNFRDEKTVTGAPELLCKTLYAWEAAISPHLAAER 170
Query: 187 ESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLY 246
E V DS V++ + KCL++ +E +SE+ ++LC+VETAGGVASPGPSG+LQCDLY
Sbjct: 171 E-NATVEDSVVLQMIEKCLKEEMECGVKSEKS--DLLCLVETAGGVASPGPSGTLQCDLY 227
Query: 247 RPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVP 306
RPFRLPGILVGDGRLGGISGTI+AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+VP
Sbjct: 228 RPFRLPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVP 287
Query: 307 VLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFT 366
VLVLPP+P+D S+DL+EWF ES VF +LK M+LA ER++RL M K AGE+FWWPFT
Sbjct: 288 VLVLPPVPKDPSDDLIEWFVESDGVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFT 347
Query: 367 QHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMG 426
QHKLV +E VTVIDSRCGENFS+Y+ N + QQFDACASWWTQGPD T Q ELAR+MG
Sbjct: 348 QHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMG 407
Query: 427 YTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
YTAARFGHVMFPENVYEPAL+CAELLL GVGKGWASR YFSDNGSTAIEIALKMAFRKF
Sbjct: 408 YTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFC 467
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546
DH +F EK I +KV+AL+GSYHGDTLGAMEAQAPSPYTGFLQQPWY+GRGL
Sbjct: 468 VDH----NFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGL 523
Query: 547 FLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ 606
FLDPPTVF+ N W +SLPE E+ TF SRDEIF + RD+S LA IYS+Y+S+
Sbjct: 524 FLDPPTVFLSNGSWNISLPESFSEIAPEYG--TFTSRDEIFDKSRDASTLARIYSAYLSK 581
Query: 607 NLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGF 666
+L ++ G++ S +GALIIEPV+H AGGMHMVDPLFQR+LV EC+NRKIPVIFDEVFTGF
Sbjct: 582 HLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGF 641
Query: 667 WRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSY 726
WRLGVETT +LLGC PDIAC+ KLLTGG++PLA TLAT+AVFDSF GDSKLKALLHGHSY
Sbjct: 642 WRLGVETTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSY 701
Query: 727 SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL 786
SAHA+GCA AAK+I+WFKDP+TNHNI + + LRELWD EL+QQISSH VQRVV +GTL
Sbjct: 702 SAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTL 761
Query: 787 CAIELQAAGCNAGY 800
A+EL+A N+GY
Sbjct: 762 FALELKADASNSGY 775
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429 | Back alignment and structure |
|---|
Score = 247 bits (633), Expect = 3e-74
Identities = 111/441 (25%), Positives = 165/441 (37%), Gaps = 93/441 (21%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ--G---PDA 415
PFT V + S E + + + D +SWW G P
Sbjct: 13 ILHPFTSMTS--PLPVYPVVS--AEGCELILSDGRRLV----DGMSSWWAAIHGYNHP-- 62
Query: 416 TLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475
+L M HVMF + PA+E L+ + + +D+GS A+E
Sbjct: 63 ----QLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPL-ECVFLADSGSVAVE 117
Query: 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-----S 530
+A+KMA + + G+ + L + YHGDT GAM P S
Sbjct: 118 VAMKMALQYWQA--------KGEARQ------RFLTFRNGYHGDTFGAMSVCDPDNSMHS 163
Query: 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590
+ G+L + LF P M EW +E
Sbjct: 164 LWKGYLPE------NLFAPAPQSRMD--------GEW---------------------DE 188
Query: 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650
RD A + +++ + I A+IIEP+V AGGM M P + + + K C
Sbjct: 189 RDMVGFARLMAAHRHE-------------IAAVIIEPIVQGAGGMRMYHPEWLKRIRKIC 235
Query: 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
I +I DE+ TGF R G + PDI C GK LTGG + L+ATL T V ++
Sbjct: 236 DREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAET 295
Query: 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770
+ +HG ++ + L CAAA S+ + + I +L E +
Sbjct: 296 ISNG-EAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQV---ADIEVQLR--EQLAP 349
Query: 771 ISSHRTVQRVVALGTLCAIEL 791
V V LG + +E
Sbjct: 350 ARDAEMVADVRVLGAIGVVET 370
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457 | Back alignment and structure |
|---|
Score = 242 bits (619), Expect = 7e-72
Identities = 111/436 (25%), Positives = 171/436 (39%), Gaps = 82/436 (18%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ--G---PDA 415
W P++ + V + G ++ +D + + DA +SWWT G P
Sbjct: 41 LWHPYSSIGR-EAVSPVVAVAAHGAWLTLIRDGQPIEV---LDAMSSWWTAIHGHGHP-- 94
Query: 416 TLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475
L + + HVMF +EPA A+LL+ G +FSD+GS ++E
Sbjct: 95 ----ALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGL-DTVFFSDSGSVSVE 149
Query: 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535
+A KMA + + G+ K +++ +G YHGDT AM
Sbjct: 150 VAAKMALQYW----------RGRGLPGKR---RLMTWRGGYHGDTFLAMSIC-------- 188
Query: 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595
DP +S W L + F + Y+ S+
Sbjct: 189 -------------DPHGGM--HSLWTDVLAAQV-----------FAPQVPRDYDPAYSAA 222
Query: 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655
+ + + + + A+++EPVV AGGM DP + L C+ ++
Sbjct: 223 FEAQLAQHAGE-------------LAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEV 269
Query: 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS 715
+IFDE+ TGF R G AD G PDI C GK LTGG + LAATL T V + +
Sbjct: 270 LLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGA 329
Query: 716 KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775
AL+HG ++ A+ L CA + S++ I + L + +
Sbjct: 330 A-GALMHGPTFMANPLACAVSVASVELLLGQDWRTRI---TELAAGLT--AGLDTARALP 383
Query: 776 TVQRVVALGTLCAIEL 791
V V G + IE
Sbjct: 384 AVTDVRVCGAIGVIEC 399
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 7e-69
Identities = 111/446 (24%), Positives = 176/446 (39%), Gaps = 77/446 (17%)
Query: 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT- 410
D+ +++ + W PFTQ K +E +I+S G V ++ D +S W
Sbjct: 4 DLIEKSKKHLWLPFTQMK-DYDENPLIIES--GTGIKVKDINGKEYY----DGFSSVWLN 56
Query: 411 -QG---PDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYF 466
G EL + + H PA + AE L+ K +R ++
Sbjct: 57 VHGHRKK------ELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLIDISPKK-LTRVFY 109
Query: 467 SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA 526
SD+G+ A+EIALKMAF+ + EK K +A+K YHGDT+GA+
Sbjct: 110 SDSGAEAMEIALKMAFQYW----------KNIGKPEKQ---KFIAMKNGYHGDTIGAVSV 156
Query: 527 QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEI 586
LF + + + E I + R E
Sbjct: 157 ---------------GSIELF---------HHVYGPLMFE------SYKAPIPYVYRSES 186
Query: 587 FYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646
+ + + ++ I AL IE +V A GM ++ + +
Sbjct: 187 GDPDECRDQCLRELAQLLEEH---------HEEIAALSIESMVQGASGMIVMPEGYLAGV 237
Query: 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNA 706
+ C + +I DEV TGF R G + PD+ GK +TGG +P+A T AT
Sbjct: 238 RELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATED 297
Query: 707 VFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDL 765
++ +F D LK HGHSY+ + LGCA A +++ F+ + + + L L
Sbjct: 298 IYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLL-- 355
Query: 766 ELIQQISSHRTVQRVVALGTLCAIEL 791
Q + + V + LG +C EL
Sbjct: 356 ---QDLHALPHVGDIRQLGFMCGAEL 378
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452 | Back alignment and structure |
|---|
Score = 163 bits (415), Expect = 1e-43
Identities = 82/454 (18%), Positives = 142/454 (31%), Gaps = 114/454 (25%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT----QGPD-- 414
W + TV E V Q +++ D + W G
Sbjct: 20 VWHGMRPFS---PNSTTVGAK--AEGCWVEDIQGKRYL----DGMSGLWCVNSGYGRKEL 70
Query: 415 ---ATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA---SRAYFSD 468
A Q + + Y H EPA++ AE L + W +FS+
Sbjct: 71 AEAAYKQ---LQTLSYFPMSQSH--------EPAIKLAEKLNE-----WLGGEYVIFFSN 114
Query: 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT-----LGA 523
+GS A E A K+A + + G+ + K ++ YHG+T
Sbjct: 115 SGSEANETAFKIARQYY--------AQKGE--PHR---YKFMSRYRGYHGNTMATMAATG 161
Query: 524 MEA-----QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578
+ + + P + + + + +
Sbjct: 162 QAQRRYQYEPFASGFLHVTPPDCYRMPGIERENI-------YDVECVKEVDRVMTWEL-- 212
Query: 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638
E I A I+EP++ G +
Sbjct: 213 ----------SET----------------------------IAAFIMEPIITGGGILMAP 234
Query: 639 DPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIP 697
+ + E CQ +I DEV GF R G PDI K +T +P
Sbjct: 235 QDYMKAV--HETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYLP 292
Query: 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERR 757
L+AT ++++F G + + H +++ + CA A K+++ ++ N+I
Sbjct: 293 LSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIEN----ENLIERSA 348
Query: 758 ILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
+ L +L ++I H V + G L IEL
Sbjct: 349 QMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIEL 382
|
| >3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 3e-41
Identities = 83/449 (18%), Positives = 144/449 (32%), Gaps = 98/449 (21%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ----GPD-- 414
+ FT + + V+ GE + +++ DA + W
Sbjct: 29 SLYGFTDMPSLHQRGTVVVTH--GEGPYIVDVNGRRYL----DANSGLWNMVAGFDHKGL 82
Query: 415 ---ATLQIELARDMGY--TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDN 469
A Q + + +E L++ + R +++++
Sbjct: 83 IDAAKAQ---YERFPGYHAFFGRMS--------DQTVMLSEKLVEVSPFD-SGRVFYTNS 130
Query: 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP 529
GS A + +KM + GK +K K+L +YHG T +
Sbjct: 131 GSEANDTMVKMLWFLH--------AAEGK--PQK---RKILTRWNAYHGVTAVSASM--- 174
Query: 530 SPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYE 589
TG +P+ +F P LP H +
Sbjct: 175 ---TG---KPY---NSVF-GLP------------LPG------FVHLTCPHY------WR 200
Query: 590 ERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH-MVDPLFQRILVK 648
+ + + + +++ L + + + I EPV+ AGG+ FQ I
Sbjct: 201 YGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVM-GAGGVIPPAKGYFQAI--L 257
Query: 649 E-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAV 707
+ IPVI DEV GF R G PD K LT G P+ A + +
Sbjct: 258 PILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPEL 317
Query: 708 FDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN---IIPE-RRILREL 762
++ HG + S H +GCA A K+I + N + P L+ +
Sbjct: 318 SKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHI 377
Query: 763 WDLELIQQISSHRTVQRVVALGTLCAIEL 791
+ I + R + G + A+E
Sbjct: 378 AERPNIGEY---RGI------GFMWALEA 397
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 5e-40
Identities = 87/463 (18%), Positives = 152/463 (32%), Gaps = 125/463 (26%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQG-------- 412
W P+T ++ +I + E + D+ K D+ + WT G
Sbjct: 19 HWMPYTANRNF-LRDPRLIVA--AEGSWLVDDKGRKVY----DSLSGLWTCGAGHTRKEI 71
Query: 413 PDATLQIELARDMG----YTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSD 468
+A +A+ + ++GH + + AE + + +F+D
Sbjct: 72 QEA-----VAKQLSTLDYSPGFQYGH--------PLSFQLAEKITDLTPGN-LNHVFFTD 117
Query: 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA-- 526
+GS A+KM + G+ K K++ YHG +
Sbjct: 118 SGSECALTAVKMVRAYW--------RLKGQ--ATKT---KMIGRARGYHGVNIAGTSLGG 164
Query: 527 --------QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578
P L + P ++L + L I H
Sbjct: 165 VNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEG------GIALADELLKLIELHDAS 218
Query: 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638
I A+ +EP+ + G+ +V
Sbjct: 219 N----------------------------------------IAAVFVEPLA-GSAGV-LV 236
Query: 639 DPL--FQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695
P +R +E C I ++FDEV TGF R G AD G PD+ C K +T G
Sbjct: 237 PPEGYLKRN--REICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGA 294
Query: 696 IPLAATLATNAVFDSFVGDS---KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN- 751
IP+ A +A+ ++ +F+ HG++YSAH + CAA ++ + +
Sbjct: 295 IPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSV 354
Query: 752 --IIPE-RRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
+ P + L + + + I R G AI++
Sbjct: 355 AEVAPHFEKALHGIKGAKNVIDI---RNF------GLAGAIQI 388
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 1e-37
Identities = 98/447 (21%), Positives = 165/447 (36%), Gaps = 90/447 (20%)
Query: 361 FWWPFTQHK--LVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ----GPD 414
F+ P T E ++ GE +V+ + K I DA A + G
Sbjct: 17 FFHPSTHMGTHARGESPTRIMAG--GEGVTVWDNNGRKSI----DAFAGLYCVNVGYGRQ 70
Query: 415 -----ATLQIELARDMGY--TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFS 467
Q A+++ Y G E ++ A++++ KG SR YF
Sbjct: 71 KIADAIATQ---AKNLAYYHAYVGHGT--------EASITLAKMIIDRAPKG-MSRVYFG 118
Query: 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ 527
+GS A E +K+ + + LG+ EK K+++ YHG +
Sbjct: 119 LSGSDANETNIKLIWYYN--------NVLGR--PEKK---KIISRWRGYHGSGVMTGSL- 164
Query: 528 APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587
TG + F D P V H + +
Sbjct: 165 -----TG---LDLF--HNAF-DLP------------RAP------VLHTEAPYY------ 189
Query: 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM-VDPLFQRIL 646
+ D S +S + + L + + I A I EP++ GG+ +++I
Sbjct: 190 FRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPIL-GTGGIVPPPAGYWEKI- 247
Query: 647 VKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATN 705
+ + + ++ DEV TGF RLG +D G PD+ K LT PL+ + +
Sbjct: 248 -QAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVAD 306
Query: 706 AVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWD 764
V+ V S KL +L HG +YSAH + AA +++ + +++ +
Sbjct: 307 RVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDE----MDLVTNAGETGAYFR 362
Query: 765 LELIQQISSHRTVQRVVALGTLCAIEL 791
EL + + H+ V V G L A+E
Sbjct: 363 AELAKAVGGHKNVGEVRGDGMLAAVEF 389
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 2e-35
Identities = 88/455 (19%), Positives = 150/455 (32%), Gaps = 112/455 (24%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQG-----PD- 414
PFT + + V+ GE ++ + NK I D A W D
Sbjct: 18 HLHPFTDTASLNQAGARVMTR--GEGVYLWDSEGNKII----DGMAGLWCVNVGYGRKDF 71
Query: 415 ---ATLQIELARDMGY--TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDN 469
A Q ++ + T + H +E + LL + G R +++++
Sbjct: 72 AEAARRQ---MEELPFYNTFFKTTH--------PAVVELSSLLAEVTPAG-FDRVFYTNS 119
Query: 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA--- 526
GS +++ ++M R + D GK EK ++ YHG T+G
Sbjct: 120 GSESVDTMIRMVRRYW--------DVQGK--PEKK---TLIGRWNGYHGSTIGGASLGGM 166
Query: 527 -------QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDIT 579
P P ++QPW+ G + P + + WL KI+E
Sbjct: 167 KYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDE-------FGVVAARWLEEKILEIGADK 219
Query: 580 FCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639
+ A + EP+ AGG+ +V
Sbjct: 220 ----------------------------------------VAAFVGEPIQ-GAGGV-IVP 237
Query: 640 PL--FQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVI 696
P + I + C+ + ++ DEV GF R G G PD+ K L+ G +
Sbjct: 238 PATYWPEI--ERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYL 295
Query: 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756
P+ A V + + HG +YS H + A A ++ +D + +
Sbjct: 296 PIGAVFVGKRVAEGLIAGG---DFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRV---K 349
Query: 757 RILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
+ + S V V +G + A L
Sbjct: 350 DDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTL 384
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 4e-34
Identities = 89/454 (19%), Positives = 154/454 (33%), Gaps = 113/454 (24%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQG-----PD- 414
PF+ + + EE VI + + + + DA A W +
Sbjct: 23 HLHPFSANNALGEEGTRVITR--ARGVWLNDSEGEEIL----DAMAGLWCVNIGYGRDEL 76
Query: 415 ---ATLQIELARDMGY--TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDN 469
A Q R++ Y T + H PA+ A+ L + + +F+
Sbjct: 77 AEVAARQ---MRELPYYNTFFKTTH--------VPAIALAQKLAELAPGD-LNHVFFAGG 124
Query: 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM----- 524
GS A + ++M + G+ EK +++ K +YHG T+ +
Sbjct: 125 GSEANDTNIRMVRTYW--------QNKGQ--PEKT---VIISRKNAYHGSTVASSALGGM 171
Query: 525 ----EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF 580
P + QP + G +DP + L+ L I+E +
Sbjct: 172 AGMHAQSGLIPDVHHINQPNWWAEGGDMDPEE-------FGLARARELEEAILELGENR- 223
Query: 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDP 640
+ A I EPV AGG+ +V P
Sbjct: 224 ---------------------------------------VAAFIAEPVQ-GAGGV-IVAP 242
Query: 641 L--FQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIP 697
+ I + C I +I DEV GF R G +G P I K L+ G P
Sbjct: 243 DSYWPEI--QRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAP 300
Query: 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERR 757
+ ++ + V D HG++YS H + A A ++++ ++ NI+ R
Sbjct: 301 IGGSIVCDEVAHVIGKDE----FNHGYTYSGHPVAAAVALENLRILEE----ENILDHVR 352
Query: 758 ILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
+ + E + ++ H V +G + +I L
Sbjct: 353 NVAAPYLKEKWEALTDHPLVGEAKIVGMMASIAL 386
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 7e-33
Identities = 74/358 (20%), Positives = 120/358 (33%), Gaps = 79/358 (22%)
Query: 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502
+ E A L + VG R + GS A E A+K+A R++ + +
Sbjct: 72 DVLEEYAGRLARFVGLPT-FRFWAVSGGSEATESAVKLA-RQY---------HVERGEPG 120
Query: 503 KCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF-----MYN 557
+ KV+ SYHG +LG++ A +G L P +
Sbjct: 121 RF---KVITRVPSYHGASLGSLAA------SG---MGARRELYTPLMRPEAWPKLPKPDP 168
Query: 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617
++ E L + + T
Sbjct: 169 ARNGAEDAEGLRALLEREGPET-------------------------------------- 190
Query: 618 GCIGALIIEPVVHAAGGMHM-VDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTA 675
+ A + EPVV A+ ++R+ ++ C I I DEV +G R G
Sbjct: 191 --VAAFMAEPVVGASDAALAPAPGYYERV--RDICDEAGIIFIADEVMSGMGRCGSPLAL 246
Query: 676 D-LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCA 734
G PDIA GK L G PLA LA V+++ +G S A +HG +Y+ H + A
Sbjct: 247 SRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGS--GAFMHGFTYAGHPVSVA 304
Query: 735 AAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQ 792
A + + ++ + L + + +V G L + L
Sbjct: 305 AGLSVLDIVER----EDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLG 358
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 8e-31
Identities = 83/456 (18%), Positives = 146/456 (32%), Gaps = 113/456 (24%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQG-----PD- 414
P + + + A V+ E V+ + + I D A W +
Sbjct: 22 ILLPAQEMAKLGKSAQPVLTH--AEGIYVHTEDGRRLI----DGPAGMWCAQVGYGRREI 75
Query: 415 ---ATLQI-ELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNG 470
Q L + PA AE + +R +F+ G
Sbjct: 76 VDAMAHQAMVLP---YASPWYMAT--------SPAARLAEKIATLTPGD-LNRIFFTTGG 123
Query: 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA---- 526
STA++ AL+ + + LG+ +K +++ YHG T
Sbjct: 124 STAVDSALRFSEFYN--------NVLGR--PQKK---RIIVRYDGYHGSTALTAACTGRT 170
Query: 527 ------QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF 580
FL P ++ L + +I T
Sbjct: 171 GNWPNFDIAQDRISFLSSPNP-RHAGNRSQEA-------FLDDLVQEFEDRIESLGPDT- 221
Query: 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDP 640
I A + EP++ A+GG+ ++ P
Sbjct: 222 ---------------------------------------IAAFLAEPIL-ASGGV-IIPP 240
Query: 641 L--FQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTAD-LLGCVPDIACYGKLLTGGVI 696
R K C+ I I DEV TGF R G ++ + G VPDI + K +T G +
Sbjct: 241 AGYHARF--KAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYV 298
Query: 697 PLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755
PL + AV G++ K +G++YS + CAAA +I+ + I+ +
Sbjct: 299 PLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMER----EGIVDQ 354
Query: 756 RRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
R + + + + + V ++G + ++
Sbjct: 355 AREMADYF-AAALASLRDLPGVAETRSVGLVGCVQC 389
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 4e-29
Identities = 73/379 (19%), Positives = 125/379 (32%), Gaps = 101/379 (26%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A + H +F E + P ++ A L G RA G+ + E A++MA + +
Sbjct: 72 AGKLDH-LFSEMLSRPVVDLATRLANITPPG-LDRALLLSTGAESNEAAIRMA-KLVT-- 126
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
GK +++ S+HG T A A T G G
Sbjct: 127 --------GKY--------EIVGFAQSWHGMTGAAASA------TY---SAGRKGVGPA- 160
Query: 549 DPPTVFM------YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602
F Y ++ ++ + E+ Y +S
Sbjct: 161 -AVGSFAIPAPFTYRPRF--------------ERNGAYDYLAELDYAFDLIDRQSS---- 201
Query: 603 YISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV 662
G + A I EP++ ++GG+ + + L ++C+ R + +I DE
Sbjct: 202 ---------------GNLAAFIAEPIL-SSGGIIELPDGYMAALKRKCEARGMLLILDEA 245
Query: 663 FTGFWRLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLK 718
TG R G + G PDI K L G +PLAA + + A+ +
Sbjct: 246 QTGVGRTGTMFACQRD----GVTPDILTLSKTLGAG-LPLAAIVTSAAIEERA----HEL 296
Query: 719 ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER------RILRELWDLELIQQIS 772
L ++ + L A + + + + R R+ R L DL
Sbjct: 297 GYLFYTTHVSDPLPAAVGLRVLDVVQRDG-----LVARANVMGDRLRRGLLDLM-----E 346
Query: 773 SHRTVQRVVALGTLCAIEL 791
+ V G L +E+
Sbjct: 347 RFDCIGDVRGRGLLLGVEI 365
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 2e-26
Identities = 90/368 (24%), Positives = 135/368 (36%), Gaps = 83/368 (22%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
+ H F YEP LE E++ Q V +A + GS A+E A+K+A R +
Sbjct: 70 LKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA-RAAT-- 126
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
+ +A G+YHG T + TG + YS G+ L
Sbjct: 127 --------KRS--------GTIAFSGAYHGRTHYTLAL------TG--KVNPYS-AGMGL 161
Query: 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608
P V+ P L+ + S IF + D+A
Sbjct: 162 MPGHVYR------ALYPCPLHGISEDD---AIASIHRIFKNDAAPEDIA----------- 201
Query: 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668
A++IEPV GG + P F + L C I +I DEV +G R
Sbjct: 202 -------------AIVIEPV-QGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGR 247
Query: 669 LG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGDSKLKALLHG 723
G +E +G PD+ + K + GG PLA V D+ G G
Sbjct: 248 TGTLFAMEQ----MGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGG-------LG 295
Query: 724 HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL 783
+Y+ + + C AA + +K F+ + L++ L I + H + V L
Sbjct: 296 GTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDG--LLAIAE--KHPEIGDVRGL 351
Query: 784 GTLCAIEL 791
G + AIEL
Sbjct: 352 GAMIAIEL 359
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 5e-26
Identities = 66/326 (20%), Positives = 112/326 (34%), Gaps = 77/326 (23%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
+ H + P LE A+ L+ + + +FS++G+ AIE ++K+ +
Sbjct: 72 MQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVV-KN---- 126
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQA-PSPY-TGFLQQPWYSGRGL 546
T + ++A G +HG T G++ A + + P+
Sbjct: 127 ------------TGRK---YIIAFLGGFHGRTFGSISLTASKAVQRSIV--GPF------ 163
Query: 547 FLDPPTVFM--YNSKWILSLPEWLYSKIVEHKDITFCS-RDEIFYEERDSSDLASIYSSY 603
P V Y + + Y E + D IF ++A
Sbjct: 164 ---MPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVA------ 214
Query: 604 ISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF 663
+ EP+ GG + F L K + I ++ DEV
Sbjct: 215 ------------------GIFFEPI-QGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQ 255
Query: 664 TGFWRLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKA 719
G R G +E VPD+ K L GG++P+ AT+ + G
Sbjct: 256 MGLGRTGKLFAIEN----FNTVPDVITLAKALGGGIMPIGATIFRKDLDFK-PGM----- 305
Query: 720 LLHGHSYSAHALGCAAAAKSIKWFKD 745
H +++ +AL CA +K I KD
Sbjct: 306 --HSNTFGGNALACAIGSKVIDIVKD 329
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 1e-25
Identities = 85/376 (22%), Positives = 126/376 (33%), Gaps = 96/376 (25%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A F H F YE ++ AELL R ++G+ A+E A+K+A R +
Sbjct: 93 ATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVA-RLAT-- 149
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQA-PSPY-TGFLQQPWYSG--R 544
G+ V+A +YHG T M A PY + F P+ R
Sbjct: 150 --------GRP--------AVVAFDNAYHGRTNLTMALTAKSMPYKSQF--GPFAPEVYR 191
Query: 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYI 604
P + L+ E I + + LA
Sbjct: 192 MPASYP-----LRDEPGLTGEEAARRAI------------SRIETQIGAQSLA------- 227
Query: 605 SQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664
A+IIEP+ GG + P F L + I DEV T
Sbjct: 228 -----------------AIIIEPI-QGEGGFIVPAPGFLATLTAWASENGVVFIADEVQT 269
Query: 665 GFWRLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKAL 720
GF R G E G VPDI K + GG +PL+A + D+ A
Sbjct: 270 GFARTGAWFASEH----EGIVPDIVTMAKGIAGG-MPLSAVTGRAELMDAV------YAG 318
Query: 721 LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER-----RILRELWDLELIQQISSHR 775
G +Y + + CAAA ++ ++ +P R + L + +
Sbjct: 319 GLGGTYGGNPVTCAAAVAALGVMRELD-----LPARARAIEASVTS--RLSALAE--EVD 369
Query: 776 TVQRVVALGTLCAIEL 791
+ V G + AIE+
Sbjct: 370 IIGEVRGRGAMLAIEI 385
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 1e-25
Identities = 78/375 (20%), Positives = 129/375 (34%), Gaps = 89/375 (23%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
F H F YE + E L + R+ ++GS A+E A+K+A R +
Sbjct: 90 VGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIA-RSHT-- 146
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
K V+A +YHG T M T + Y G
Sbjct: 147 --------HKP--------AVVAFDHAYHGRTNLTMAL------TA--KVMPYK-DGFGP 181
Query: 549 DPPTVFM--YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ 606
P ++ + + + + E + + ++ + +LA
Sbjct: 182 FAPEIYRAPLSYPFRDAEFGKELATDGE---LAAKRAITVIDKQIGADNLA--------- 229
Query: 607 NLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGF 666
A++IEP+ GG + F L+ C+ + I DEV TGF
Sbjct: 230 ---------------AVVIEPI-QGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGF 273
Query: 667 WRLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGDSKLKALL 721
R G E G PD+ K + GG+ PL+A + DS V
Sbjct: 274 ARTGAMFACEH----EGIDPDLIVTAKGIAGGL-PLSAVTGRAEIMDSPHVSG------- 321
Query: 722 HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER-----RILRELWDLELIQQISSHRT 776
G +Y + + CAAA +I+ + + R +I+++ L +Q
Sbjct: 322 LGGTYGGNPIACAAALATIETIESEG-----LVARAQQIEKIMKD--RLGRLQA--EDDR 372
Query: 777 VQRVVALGTLCAIEL 791
+ V G + A+EL
Sbjct: 373 IGDVRGRGAMIAMEL 387
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-23
Identities = 72/376 (19%), Positives = 109/376 (28%), Gaps = 100/376 (26%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
AA PA+ AE LL + +F +GS A E A + K +
Sbjct: 72 AANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAI-VKAT-- 128
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQA-PSPYTGFLQQPWYSGRGLF 547
G+ V+A G+YHG T+G+M
Sbjct: 129 --------GRS--------GVIAFAGAYHGCTVGSMAFSGHSVQADAAK----------- 161
Query: 548 LDPPTVF--MYNSKWILSLPEWLYSKIVEHKDITFCSRD-EIFYEERDSSDLASIYSSYI 604
+ Y Y + +
Sbjct: 162 --ADGLILLPYPDP---------YRPYRNDPTGDAILTLLTEKLAAVPAGSIG------- 203
Query: 605 SQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664
A IEP+ + GG+ + F R C+ I V+ DEV
Sbjct: 204 -----------------AAFIEPI-QSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKV 245
Query: 665 GFWRLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKAL 720
G R G E G VPDI GK L GG +PL+A +A + D
Sbjct: 246 GLARSGRLHCFEH----EGFVPDILVLGKGLGGG-LPLSAVIAPAEILDCASA------- 293
Query: 721 LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER-----RILRELWDLELIQQISSHR 775
+ + + AA ++ +P R+LR+ L + + H
Sbjct: 294 FAMQTLHGNPISAAAGLAVLETIDRDD-----LPAMAERKGRLLRDG--LSELAK--RHP 344
Query: 776 TVQRVVALGTLCAIEL 791
+ + G C +EL
Sbjct: 345 LIGDIRGRGLACGMEL 360
|
| >1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A Length = 224 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 1e-21
Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 23/171 (13%)
Query: 154 RISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESES 213
R S + V + + E SPH+ + +E G +S V+ + L +
Sbjct: 60 RNSSLQLDY--ATVN--PYTFAEPTSPHIISAQE--GRPIESLVMSAGLRALEQQAD--- 110
Query: 214 ESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273
+VE AGG +P D +LP ILV +LG I+ + +
Sbjct: 111 ---------WVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQV 161
Query: 274 LKLRGYDVVAVVF--EDHGLVNEVPLMSYLRNR--VPVL-VLPPLPQDSSN 319
++ G + V M+ L P+L +P L ++ N
Sbjct: 162 IQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPEN 212
|
| >1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A Length = 224 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSD 89
+ + +T +GKT+ S L + +A + KP+ +G +
Sbjct: 3 RYFVTGTDTEVGKTVASCALLQAA-----KAAGYRTAGYKPVASGSEKTPE 48
|
| >3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp} Length = 228 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 1e-21
Identities = 27/184 (14%), Positives = 66/184 (35%), Gaps = 26/184 (14%)
Query: 154 RISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESES 213
+ ++ + L ++ +AV+PH+ A + IE L + + D +
Sbjct: 61 NAYKHKFTA--AEIN--LISFNQAVAPHIIAAKT-----KVDISIENLKQFIEDKYNQDL 111
Query: 214 ESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273
+ + +E AGG+ +P + Q DL + ++P +LV ++G I+ T+
Sbjct: 112 D--------ILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINE 163
Query: 274 LKLRGYDVVAVVF--EDHGLVNEVPLMSYLRNR--VPVL-VLPPLPQDSS----NDLMEW 324
L + + D + ++ + + + ++
Sbjct: 164 LNRHNIKLAGWIANCNDSNIKYIDEQINTIEELSGYKCSAKISRNADYLDFIDLSKILIS 223
Query: 325 FDES 328
+E+
Sbjct: 224 PEEN 227
|
| >3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp} Length = 228 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSD 89
F I +T +GKT +S L N K + LKP+ +G S+
Sbjct: 6 KFFIIGTDTEVGKTYISTKLIEVC-----EHQNIKSLCLKPVASGQSQFSE 51
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449 | Back alignment and structure |
|---|
Score = 94.2 bits (235), Expect = 2e-20
Identities = 61/380 (16%), Positives = 106/380 (27%), Gaps = 72/380 (18%)
Query: 429 AARFGHVMFP---ENVY-EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRK 484
A + +VY E + +G +F + G+ A+E ALK A
Sbjct: 83 AELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAA-FD 141
Query: 485 FSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR 544
+ H + + +VL L+G++HG + + T +P + R
Sbjct: 142 WKSRHN------QAHGIDPALGTQVLHLRGAFHGRSGYTLSL------TN--TKPTITAR 187
Query: 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYI 604
D P + P DE ++ L
Sbjct: 188 FPKFDWP---------RIDAPYMRP------------GLDEPAMAALEAEALRQA----- 221
Query: 605 SQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664
+ + + + EP + GG P F + + C +IFDEV T
Sbjct: 222 -RAAFETRPHDI----ACFVAEP-IQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQT 275
Query: 665 GFWRLGVETTADL-----LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV-GDSKLK 718
G T L PDI +GK + + A V
Sbjct: 276 GCGL-----TGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADNVFAVPSR---- 326
Query: 719 ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ 778
++ + A + ++ + + + LR L+ + V
Sbjct: 327 ---LNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRA--RLDELAADFPA-VVL 380
Query: 779 RVVALGTLCAIELQAAGCNA 798
G +CA L
Sbjct: 381 DPRGRGLMCAFSLPTTADRD 400
|
| >3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* Length = 251 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 2e-19
Identities = 33/178 (18%), Positives = 66/178 (37%), Gaps = 25/178 (14%)
Query: 161 SSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKM 220
+ V++L L + + ++P AAE G+ ++ + + + + D L+
Sbjct: 82 AGVTQLAG--LARYPQPMAPAAAAEHA--GMALPAR--DQIVRLIAD-LDRPGR------ 128
Query: 221 EILCIVETAGGVASP-GPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGY 279
L +VE AGG+ G D+ ++V LG ++ T E+L +
Sbjct: 129 --LTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQV 186
Query: 280 DVVAVVF----EDHGLVNE-----VPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDES 328
+V + GLV + ++ +R +P D + FD +
Sbjct: 187 SCAGLVIGSWPDPPGLVAASNRSALARIAMVRAALPAGAASLDAGDFAAMSAAAFDRN 244
|
| >3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* Length = 251 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 13/71 (18%)
Query: 27 HPQPLDLPLSH--------PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78
H L + + T +GKT+V A L+S+ A K
Sbjct: 8 HHHSSGLQGTENLYFQSHMTILVVTGTGTGVGKTVVCAALASAA-----RQAGIDVAVCK 62
Query: 79 PIQTGYPHDSD 89
P+QTG D
Sbjct: 63 PVQTGTARGDD 73
|
| >3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A Length = 242 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 2e-18
Identities = 25/158 (15%), Positives = 51/158 (32%), Gaps = 18/158 (11%)
Query: 172 FAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGG 231
+ + + +P +A + E D + L + L + + L IVE AGG
Sbjct: 95 YRYHKVSAPLIAQQEEDPNAPID---TDNLTQRLHN-FTKTYD--------LVIVEGAGG 142
Query: 232 VASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVF----E 287
+ P D + +L+ LG I+ + LK D +
Sbjct: 143 LCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNN 202
Query: 288 DHGLVNEVPLMSYLRNR--VPVLVLPPLPQDSSNDLME 323
+P + R P+++ + + ++
Sbjct: 203 TAFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALK 240
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 5e-17
Identities = 62/396 (15%), Positives = 112/396 (28%), Gaps = 87/396 (21%)
Query: 419 IELARDMGYTAARFGHVMFPENVYEPALE-CAELLLQGVGKGWASRAYFSDNGSTAIEIA 477
++L + + E +E E LL KG S+ GS + E A
Sbjct: 85 VKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKG-MSQLITMACGSCSNENA 143
Query: 478 LKMAF-------RKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS 530
K F R S + ++ + C + +L+ G++HG T+G +
Sbjct: 144 FKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLAT---- 199
Query: 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590
T + + D P K+ L ++ E + + D I
Sbjct: 200 --TH--SKAIHKIDIPSFDWPIAPFPRLKYPLEEFVK-ENQQEEARCLEE-VEDLIVKYR 253
Query: 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650
+ +A +I+EP+ + GG + F R L
Sbjct: 254 KKKKTVA------------------------GIIVEPI-QSEGGDNHASDDFFRKLRDIS 288
Query: 651 QNRKIPVIFDEVFTGFWR---------LGVETTADLLGCVPDIACYGKLLTGGVIPLAAT 701
+ + DEV TG G++ D+ + K + G
Sbjct: 289 RKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDD-------PADVMTFSKKMMTGG-FFHKE 340
Query: 702 LATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER----- 756
+++ A+ I K +
Sbjct: 341 EFRPNA----PYR-------IFNTWLGDPSKNLLLAEVINIIKRED-----LLSNAAHAG 384
Query: 757 -RILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
+L L L+L + + RV GT C+ +
Sbjct: 385 KVLLTGL--LDLQARYPQF--ISRVRGRGTFCSFDT 416
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 4e-13
Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 23/183 (12%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680
A I+EP+ G+ + + + + C+ + + DEV TG R T LL
Sbjct: 215 AFIVEPI-QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGR-----TGKLLCVH 268
Query: 681 ----VPDIACYGKLLTGGVIPLAATLATNAVFDSFV-GDSKLKALLHGHSYSAHALGCAA 735
PD+ GK L+GG P++A LA + + G+ HG +Y + L +
Sbjct: 269 HYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGE-------HGSTYGGNPLAASI 321
Query: 736 AAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795
+++ + + N E L +++ + V+ V G LCAIE +
Sbjct: 322 CVEALNVLINEKLCENAEKLGGPFLE----NLKRELKDSKIVRDVRGKGLLCAIEFKNEL 377
Query: 796 CNA 798
N
Sbjct: 378 VNV 380
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 9e-12
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 15/173 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A ++EP+ G+ + DP + + + C ++ I DE+ TG R G D
Sbjct: 224 VAAFMVEPI-QGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYEN 282
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGDSKLKALLHGHSYSAHALGCAAAAK 738
PDI GK L+GG+ P++A L + + + G+ HG +Y + LGC A
Sbjct: 283 VRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGE-------HGSTYGGNPLGCRVAIA 335
Query: 739 SIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
+++ ++ N ILR +L + V V G L AI +
Sbjct: 336 ALEVLEEENLAENADKLGIILRN--ELMKLP----SDVVTAVRGKGLLNAIVI 382
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 3e-11
Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 25/182 (13%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
A I+EP+ G+++ F + ++ C+ + + DE+ TG R G D
Sbjct: 183 TAAFILEPI-QGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDN 241
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFV-GDSKLKALLHGHSYSAHALGCAAAAK 738
PD+ GK L GGV P++ A + F G HG ++ + L CA +
Sbjct: 242 VTPDMYILGKALGGGVFPISCAAANRDILGVFEPGS-------HGSTFGGNPLACAVSIA 294
Query: 739 SIKWFKDPQTNHNIIPER-----RILRELWDLELIQQISSHRTVQRVVALGTLCAIELQA 793
+++ ++ + + ER L L+ I + + V G IEL
Sbjct: 295 ALEVLEEEK-----LTERSLQLGEKLVG--QLKEID----NPMITEVRGKGLFIGIELNE 343
Query: 794 AG 795
Sbjct: 344 PA 345
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} Length = 434 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 1e-10
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
+ A+++EP+ G +V+P F + + VI+DEV T F R DL
Sbjct: 203 VAAILVEPI---VGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDL 258
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
LG PD+ GK++ GG +P+ A
Sbjct: 259 LGVTPDLTALGKVIGGG-LPIGA 280
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} Length = 429 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 1e-10
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
+ +I+EPV AG M+ + PL F L C +I DEV TGF R+ + D
Sbjct: 201 VACIIVEPV---AGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDY 256
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
+PD+ C GK++ GG +P+ A
Sbjct: 257 YHVIPDLTCLGKIIGGG-MPVGA 278
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* Length = 427 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 2e-10
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I +I+EP+ G + P F L + ++FDEV TGF R+ +
Sbjct: 200 IAGVILEPI---VGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEK 255
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG +P+ A
Sbjct: 256 FGVTPDLTTLGKIIGGG-LPVGA 277
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 2e-10
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I A I EPV + F R + + I DEV +GF R+G L
Sbjct: 202 IAAFIAEPV---GSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQAL 257
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
L PD+ C K GG +P
Sbjct: 258 LDVQPDLTCLAKASAGG-LPGGI 279
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* Length = 429 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 2e-10
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I +I+EPV AG M +V P F L + + +IFDEV TGF R+
Sbjct: 201 IACVIVEPV---AGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGY 256
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ C GK++ GG +P+ A
Sbjct: 257 YGVTPDLTCLGKVIGGG-LPVGA 278
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} Length = 424 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 2e-10
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I A+I EPV G ++ P F + L E + + +I DEV TGF RL +L
Sbjct: 200 IAAIIFEPV---VGNAGVLVPTEDFLKAL-HEAKAYGVLLIADEVMTGF-RLAFGGATEL 254
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
LG PD+ GK+L GG +P AA
Sbjct: 255 LGLKPDLVTLGKILGGG-LPAAA 276
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* Length = 434 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 2e-10
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I +I+EPV ++ P F L + + +I DEV TGF RLG+E
Sbjct: 204 IAGVIVEPV---IANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGY 259
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
DI GK++ GG P+ A
Sbjct: 260 FNIEGDIIVLGKIIGGG-FPVGA 281
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 20/138 (14%)
Query: 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674
+ A+++EP+ GG+ P F + L C + ++FDEV G R G
Sbjct: 197 VMDDHTCAVVVEPI-QGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTG---- 251
Query: 675 ADL-----LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGDSKLKALLHGHSYSA 728
DL G PDI K L GG P++A L T + +F VG HG +Y
Sbjct: 252 -DLFAYMHYGVTPDILTSAKALGGGF-PVSAMLTTQEIASAFHVGS-------HGSTYGG 302
Query: 729 HALGCAAAAKSIKWFKDP 746
+ L CA A + P
Sbjct: 303 NPLACAVAGAAFDIINTP 320
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 6e-07
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 22/110 (20%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
H NV+ EPAL L + +A R F ++G+ A E A K+A R ++
Sbjct: 86 GETLWHT---SNVFTNEPALRLGRKL---IDATFAERVLFMNSGTEANETAFKLA-RHYA 138
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT-GF 535
+ + K K++A ++HG +L + Y+ GF
Sbjct: 139 CV---------RHSPFKT---KIIAFHNAFHGRSLFTVSVGGQPKYSDGF 176
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 4e-10
Identities = 47/176 (26%), Positives = 72/176 (40%), Gaps = 26/176 (14%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680
A+I+EPV GG+ P F R + Q + +I DE+ TG R G
Sbjct: 188 AVILEPV-QGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTG-----KRFAFE 241
Query: 681 ----VPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGDSKLKALLHGHSYSAHALGCAA 735
VPDI K L GGV PL + V S G HG ++ + L AA
Sbjct: 242 HFGIVPDILTLAKALGGGV-PLGVAVMREEVARSMPKGG-------HGTTFGGNPLAMAA 293
Query: 736 AAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
+I++ + + + ER W +E ++ I ++ V +G + +EL
Sbjct: 294 GVAAIRYLERTR-----LWERAAELGPWFMEKLRAI-PSPKIREVRGMGLMVGLEL 343
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 6e-07
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 25/100 (25%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
A + E L + +R + ++G+ A E ALK A R +
Sbjct: 74 AETLMAM---PQTLPTPMRGEFYRTLTAILPPE-LNRVFPVNSGTEANEAALKFA-RAHT 128
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA 526
+ + A + G T+G++
Sbjct: 129 GRKKFV------------------AAMRGFSGRTMGSLSV 150
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 7e-10
Identities = 41/176 (23%), Positives = 63/176 (35%), Gaps = 25/176 (14%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL---- 677
A+ +EP+ G+ F K C ++FDEV G R G L
Sbjct: 186 AVFLEPI-QGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG-----KLFAYQ 239
Query: 678 -LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGDSKLKALLHGHSYSAHALGCAA 735
G VPD+ K L GGV P+ A + + GD HG ++ + L C A
Sbjct: 240 KYGVVPDVLTTAKGLGGGV-PIGAVIVNERA-NVLEPGD-------HGTTFGGNPLACRA 290
Query: 736 AAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
IK + + L + +L + + V V +G + I+
Sbjct: 291 GVTVIKELTKEGFLEEVEEKGNYLMK----KLQEMKEEYDVVADVRGMGLMIGIQF 342
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 5e-07
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 20/99 (20%)
Query: 440 NVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
N++ P +E AELL + + +F++ G+ A E A+K+A RK+
Sbjct: 77 NLFWNRPQMELAELL---SKNTFGGKVFFANTGTEANEAAIKIA-RKYGKKK-------S 125
Query: 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT-GF 535
+ +L+ S+HG TLG++ A Y F
Sbjct: 126 EKKYR------ILSAHNSFHGRTLGSLTATGQPKYQKPF 158
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 7e-10
Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 25/184 (13%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL---- 677
A+I+E V GG++ + F + L K C + I +I DE+ G R +
Sbjct: 182 AIILESV-QGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGR-----SGKFFAYE 235
Query: 678 -LGCVPDIACYGKLLTGGVIPLAATLATNAVF-DSF-VGDSKLKALLHGHSYSAHALGCA 734
+PDI K L G+ + A + V +S GD HG +Y + L CA
Sbjct: 236 HAQILPDIMTSAKALGCGL-SVGAFVINQKVASNSLEAGD-------HGSTYGGNPLVCA 287
Query: 735 AAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794
+ FK+ + N+ L + L + I+ ++ LG + + L +
Sbjct: 288 GVNAVFEIFKEEKILENVNKLTPYLEQ----SLDELINEFDFCKKRKGLGFMQGLSLDKS 343
Query: 795 GCNA 798
A
Sbjct: 344 VKVA 347
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 4e-07
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 20/99 (20%)
Query: 440 NVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
N+Y E A+ L R +F+++G+ +IE A+K A RK++F+ G
Sbjct: 73 NLYYNENIAAAAKNL---AKASALERVFFTNSGTESIEGAMKTA-RKYAFNK-------G 121
Query: 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT-GF 535
+ +A K S+HG TLGA+ A Y F
Sbjct: 122 VKGGQ------FIAFKHSFHGRTLGALSLTANEKYQKPF 154
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 1e-09
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL---- 677
+IIE + GG++ F L + C+ + + +I DEV TG R G +
Sbjct: 175 GIIIEVI-QGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTG-----EFYAYQ 228
Query: 678 -LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGDSKLKALLHGHSYSAHALGCAA 735
PD+ K L GGV P+ A LA V SF G HG ++ + L C A
Sbjct: 229 HFNLKPDVIALAKGLGGGV-PIGAILAREEVAQSFTPGS-------HGSTFGGNPLACRA 280
Query: 736 A 736
Sbjct: 281 G 281
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 3e-06
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 22/110 (20%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
+ HV N+Y E A L++ + +F+++G+ ++E A+K+A RK+
Sbjct: 57 VEKLLHV---SNLYENPWQEELAHKLVKHFW--TEGKVFFANSGTESVEAAIKLA-RKYW 110
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT-GF 535
D GK+ + ++ + S+HG T G++ A + GF
Sbjct: 111 RDK-------GKNKWK------FISFENSFHGRTYGSLSATGQPKFHKGF 147
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* Length = 465 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 6e-09
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
A+++EP+ G V F +L E +IFDEV T RL ++
Sbjct: 234 CAAILVEPM---LGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTS--RLSGGGAQEM 288
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
LG D+ GK + GG + A
Sbjct: 289 LGISADLTTLGKYIGGG-MSFGA 310
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 9e-09
Identities = 89/666 (13%), Positives = 168/666 (25%), Gaps = 194/666 (29%)
Query: 7 HHYPDHHRRILLRLFHHSTFHPQPLD------LPLSHPTFQIWSANTSLGKTLVSAGLSS 60
HH HH HH F L + F +
Sbjct: 1 HH---HH--------HHMDFETGEHQYQYKDILSVFEDAFV---------DNFDCKDVQD 40
Query: 61 SFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKL---PSLSLRRNFPSSLILSNSIL 117
S S + + S + LF L +++ L ++ L
Sbjct: 41 -MPKSILSKEEIDHIIMSK-----DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 118 FSSL--------FAAKSFLSSRDLPFQ-PQKFNSEMYDLNFREEN----RISGEEDSSVS 164
S + + ++ RD + Q F Y+++ R + R + E
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK--YNVS-RLQPYLKLRQALLELRPAK 151
Query: 165 ELV------C-KTLFAWEEAVSPHLAAERESGGVVGDSKVIE---------TLGKCLRDG 208
++ KT W +A + V KV L C
Sbjct: 152 NVLIDGVLGSGKT---W-------VALD-----VCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 209 LESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTI 268
E ++ L P+ + + D +L I L +
Sbjct: 197 TVLE------MLQKLLYQID--------PNWTSRSDHSSNIKLR-IHSIQAELRRL---- 237
Query: 269 SAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSN-DLMEWFDE 327
LK + Y+ +V + V + +L+ + D +
Sbjct: 238 -----LKSKPYENCLLVLLN---VQNAKAWNAFNLSCKILLTT---RFKQVTDFLSAATT 286
Query: 328 SHNVFDSLKNIMLLAYSERIQRLC------DMPKRAGELFWWPFTQHKLVPEEAVTVIDS 381
+H D + + + D+P+ P ++ E + D
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN--PRR-LSIIAES---IRDG 340
Query: 382 RCG-ENFSVYQ-DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPE 439
+N+ D+ I + L+ R M + +FP
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNV------------LEPAEYRKM-FDRL----SVFPP 383
Query: 440 NVYEPA--L---------ECAELLLQG-VGKGWASRAYFSDNGSTAIEIALKMAFRKFSF 487
+ + P L +++ + + I I
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK----QPKESTISI----------- 428
Query: 488 DHEVLVDFLGKDTTEKCIELKVLA---LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYS-- 542
+ ++ K E + ++ + ++ D L P + +YS
Sbjct: 429 -PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI------PPYLDQY----FYSHI 477
Query: 543 GRGLF-LDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601
G L ++ P L +L KI H + + I L Y
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDF-RFLEQKI-RHDSTAWNASGSIL---NTLQQL-KFYK 531
Query: 602 SYISQN 607
YI N
Sbjct: 532 PYICDN 537
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 1e-07
Identities = 97/713 (13%), Positives = 197/713 (27%), Gaps = 205/713 (28%)
Query: 141 NSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIET 200
+ E + ++ ++ +S ED+ V CK + ++ L+ E E ++ +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDV---QDMPKSILSKE-EIDHIIMSKDAVSG 63
Query: 201 LGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCD---LYRPFRLPGILVG 257
L L S+ E +V+ L+ + L P +
Sbjct: 64 T-LRLFWTLLSKQEE---------MVQKFVE-------EVLRINYKFLMSPIKT------ 100
Query: 258 DGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDS 317
S Y + R Y+ V + + V+ + LR L +
Sbjct: 101 --EQRQPSMMTRMYIEQRDRLYNDNQVFAKYN--VSRLQPYLKLRQA--------LLELR 148
Query: 318 SNDL-----MEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVP 372
+ ++ D + ++Q C M ++FW
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLS-------YKVQ--CKMD---FKIFW---------- 186
Query: 373 EEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432
+ + C +V + + + Q D WT D + I+L R
Sbjct: 187 ---LNL--KNCNSPETVLEMLQK--LLYQID---PNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 433 GHVMFPENVYEPALECAELLLQGVGKGWASRA--YF---------------SDNGSTAIE 475
+ YE L L+L V ++A F +D S A
Sbjct: 237 ---LLKSKPYENCL----LVLLNV---QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS-YHGDTLGAMEAQAPSPYTG 534
+ + + + + L K + +L L + + + +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 535 FLQQPWYSGRGL---------FLDPP---------TVFMYNSKWILSLPE------WLYS 570
+ + L L+P +VF ++ +P W
Sbjct: 347 WKH---VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH----IPTILLSLIWFDV 399
Query: 571 KIVEHKDIT--FCSRDEIFYEERDSSDLA-SIYSSYISQNLLQNPGLKVSGCIGALIIEP 627
+ + + E+ + SI S Y+ ++ E
Sbjct: 400 IKSDVMVVVNKLHKYSLV---EKQPKESTISIPSIYLE-LKVKLEN------------EY 443
Query: 628 VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG----VETTADLLGCVPD 683
+H + +VD I + IP D+ F + +G + +
Sbjct: 444 ALHRS----IVDHY--NIPKTFDSDDLIPPYLDQYF--YSHIGHHLKNIEHPERMTLFRM 495
Query: 684 IACY-------GKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAH-ALGCAA 735
+ + K+ A+ N + LK Y +
Sbjct: 496 V--FLDFRFLEQKIRHDSTAWNASGSILNTLQQ-------LK------FYKPYICDNDPK 540
Query: 736 AAKSIKWFKD--PQTNHNII--PERRILRELWDLELIQQIS-----SHRTVQR 779
+ + D P+ N+I +LR + L+ + +H+ VQR
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLR----IALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 2e-07
Identities = 87/540 (16%), Positives = 152/540 (28%), Gaps = 144/540 (26%)
Query: 289 HGLVNEVPLMSY-LRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERI 347
H + E Y ++ + V + FD V D K+I+ + I
Sbjct: 5 HHMDFETGEHQYQYKDILSVF-EDAFVDN--------FDCKD-VQDMPKSILSKEEIDHI 54
Query: 348 QRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKN-KFIGQQFDACA 406
D LFW ++ EE V + F + N KF+
Sbjct: 55 IMSKDAVSGTLRLFWTLLSK----QEEMV--------QKFVEEVLRINYKFLMSPI---- 98
Query: 407 SWWTQGPDA-TLQIELARDMGYTAARFGHVMFPENVY--EPALECAELLLQ--------- 454
+ P T RD Y V NV +P L+ + LL+
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYND---NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 455 ----GVGKGW-ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509
G GK W A S ++ KM F+ F + L + + + +
Sbjct: 156 DGVLGSGKTWVALDVCLSY------KVQCKMDFKIFWLN-------LKNCNSPETVLEML 202
Query: 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY-NSKWILSLPE-W 567
L Y D + S + R L P Y N +L L
Sbjct: 203 QKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP----YENC--LLVLLNVQ 254
Query: 568 LYSKIVEHKDITFC-----SRD-------------EIFYEERDSS----DLASIYSSYIS 605
+K +++ C +R I + + ++ S+ Y+
Sbjct: 255 -NAKAWNAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 606 --------QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657
+ L NP ++S I I + + H+ I+ + N P
Sbjct: 313 CRPQDLPREVLTTNP-RRLSI-IAESIRDGLATWDNWKHVNCDKLTTII-ESSLNVLEPA 369
Query: 658 IFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV-IPLAATLA------TNAVFDS 710
+ ++ F RL V P IP L+ +
Sbjct: 370 EYRKM---FDRLSV---------FPP----------SAHIP-TILLSLIWFDVIKSDVMV 406
Query: 711 FVGDSKLKALLHGH----SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLE 766
V +L+ + S ++ K ++ H I + + + +D +
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKL----ENEYALHRSIVDHYNIPKTFDSD 462
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 6e-04
Identities = 38/202 (18%), Positives = 61/202 (30%), Gaps = 59/202 (29%)
Query: 2 LRLRRH--HYPDHHRRIL-----LRLFHHSTFHPQPLDLPL-SHPTFQIWSANTSLGKTL 53
L L+ + HR I+ + F P LD SH +G L
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH-----------IGHHL 481
Query: 54 VSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILS 113
+ L V+L D RFL K+ S N S++
Sbjct: 482 KNIEHPERMTLFRM-------VFL-----------DFRFLEQKIRHDSTAWNASGSIL-- 521
Query: 114 NSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFA 173
N L K ++ D P + N+ + L EEN I + ++L+
Sbjct: 522 N--TLQQLKFYKPYICDND-PKYERLVNAILDFLPKIEENLICSKY----TDLL------ 568
Query: 174 WEEAVSPHLAAERESGGVVGDS 195
+A E + ++
Sbjct: 569 -------RIALMAEDEAIFEEA 583
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 817 | ||||
| d2byla1 | 404 | c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu | 2e-23 | |
| d1z7da1 | 404 | c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla | 2e-22 | |
| d1sffa_ | 425 | c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA | 2e-22 | |
| d1vefa1 | 387 | c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a | 9e-18 | |
| d1s0aa_ | 429 | c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona | 3e-14 | |
| d2gsaa_ | 427 | c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase | 6e-12 | |
| d1zoda1 | 431 | c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P | 1e-09 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 0.001 |
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 101 bits (252), Expect = 2e-23
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 13/172 (7%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A ++EP+ G+ + DP + + + C ++ I DE+ TG R G D
Sbjct: 189 VAAFMVEPIQ-GEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYEN 247
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
PDI GK L+GG+ P++A L + + + K H +Y + LGC A +
Sbjct: 248 VRPDIVLLGKALSGGLYPVSAVLCDDDIMLTI------KPGEHFSTYGGNPLGCRVAIAA 301
Query: 740 IKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
++ ++ N+ L + EL++ V V G L AI +
Sbjct: 302 LEVLEE----ENLAENADKLGIILRNELMKL--PSDVVTAVRGKGLLNAIVI 347
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Score = 98.7 bits (245), Expect = 2e-22
Identities = 44/198 (22%), Positives = 79/198 (39%), Gaps = 11/198 (5%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A I+EP+ G+ + + + + C+ + + DEV TG R G
Sbjct: 187 VCAFIVEPI-QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYN 245
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
PD+ GK L+GG P++A LA + + K HG +Y + L + ++
Sbjct: 246 VKPDVILLGKALSGGHYPISAVLANDDIMLVI------KPGEHGSTYGGNPLAASICVEA 299
Query: 740 IKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG 799
+ + + N E L +++ + V+ V G LCAIE + N
Sbjct: 300 LNVLINEKLCENAEKLGGPFLE----NLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVL 355
Query: 800 YCLIELFLYNFLTTGMHP 817
++L +T +H
Sbjct: 356 DICLKLKENGLITRDVHD 373
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Score = 98.4 bits (244), Expect = 2e-22
Identities = 81/413 (19%), Positives = 131/413 (31%), Gaps = 88/413 (21%)
Query: 384 GENFSVYQDQKNKFIGQQFDACASWWTQG-----PDATLQIELARDMGYTAARFGHVMFP 438
EN V+ + +++ D P ++ + + H F
Sbjct: 29 AENCRVWDVEGREYL----DFAGGIAVLNTGHLHP------KVVAAVEAQLKKLSHTCFQ 78
Query: 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498
YEP LE E++ Q V +A + GS A+E A+K+A
Sbjct: 79 VLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAA-------------- 124
Query: 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558
+A G+YHG T + +G+ M
Sbjct: 125 -----TKRSGTIAFSGAYHGRTHYTL---------------ALTGKVNPYSAGMGLMPGH 164
Query: 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618
+ P L+ + + + D
Sbjct: 165 VYRALYPCPLHGISEDDAIASIHRIFKNDAAPED-------------------------- 198
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678
I A++IEPV GG + P F + L C I +I DEV +G R G + +
Sbjct: 199 -IAAIVIEPV-QGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQM 256
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAK 738
G PD+ + K + GG PLA V D+ G +Y+ + + C AA +
Sbjct: 257 GVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGG------LGGTYAGNPIACVAALE 309
Query: 739 SIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
+K F+ + L++ H + V LG + AIEL
Sbjct: 310 VLKVFEQENLLQKANDLGQKLKDGLL----AIAEKHPEIGDVRGLGAMIAIEL 358
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Score = 84.0 bits (207), Expect = 9e-18
Identities = 42/172 (24%), Positives = 64/172 (37%), Gaps = 14/172 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
A+I+EPV GG+ P F R + Q + +I DE+ TG R G + G
Sbjct: 178 TAAVILEPVQ-GEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFG 236
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
VPDI K L GGV A + G HG ++ + L +
Sbjct: 237 IVPDILTLAKALGGGVPLGVAVMREEVARSMPKGG-------HGTTFGGNPLAM-----A 284
Query: 740 IKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
+ ER W +E ++ I ++ V +G + +EL
Sbjct: 285 AGVAAIRYLERTRLWERAAELGPWFMEKLRAI-PSPKIREVRGMGLMVGLEL 335
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Score = 73.5 bits (179), Expect = 3e-14
Identities = 97/436 (22%), Positives = 137/436 (31%), Gaps = 83/436 (19%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT--QG---PDA 415
PFT V + S E + + + D +SWW G P
Sbjct: 13 ILHPFTSMT--SPLPVYPVVS--AEGCELILSDGRRLV----DGMSSWWAAIHGYNHP-- 62
Query: 416 TLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475
+L M HVMF + PA+E L+ +
Sbjct: 63 ----QLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADS------- 111
Query: 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535
+ L + K + L + YHGDT GAM P
Sbjct: 112 ----GSVAVEVAMKMALQYWQAKGEARQRF----LTFRNGYHGDTFGAMSVCDPDNSMHS 163
Query: 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595
L + + P + EW +V + R EI
Sbjct: 164 LWKGYL---------PENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEI--------- 205
Query: 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655
A+IIEP+V AGGM M P + + + K C I
Sbjct: 206 -------------------------AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGI 240
Query: 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS 715
+I DE+ TGF R G + PDI C GK LTGG + L+ATL T V ++
Sbjct: 241 LLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGE 300
Query: 716 KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775
+HG ++ + L CAAA S+ + + LRE
Sbjct: 301 -AGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQL-----APARDAE 354
Query: 776 TVQRVVALGTLCAIEL 791
V V LG + +E
Sbjct: 355 MVADVRVLGAIGVVET 370
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Score = 66.0 bits (160), Expect = 6e-12
Identities = 61/428 (14%), Positives = 119/428 (27%), Gaps = 93/428 (21%)
Query: 384 GENFSVYQDQKNKFIGQQFDACASWWTQG-----PDATLQIELARDMGYTAARFGHVMFP 438
++ + N++I D +W P+ +++A + G +
Sbjct: 41 VKDAYAWDVDGNRYI----DYVGTWGPAICGHAHPEVIEALKVAMEKGTS-----FGAPC 91
Query: 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498
A + + F ++G+ A L++ + G+
Sbjct: 92 ALENVLAEMVNDAV------PSIEMVRFVNSGTEACMAVLRLMRA-----------YTGR 134
Query: 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558
D K++ +G YHG + T P V +
Sbjct: 135 D--------KIIKFEGCYHGHADMFLVKAGSGVATLG-----------LPSSPGVPKKTT 175
Query: 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618
L+ P + +F E
Sbjct: 176 ANTLTTPYNDLEAV-----------KALFAENPGE------------------------- 199
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678
I +I+EP+V G + D F L + ++FDEV TGF +
Sbjct: 200 -IAGVILEPIV-GNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRI-AYGGVQEKF 256
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAK 738
G PD+ GK++ GG+ A + + + + S + L A K
Sbjct: 257 GVTPDLTTLGKIIGGGLPV-GAYGGKREIMQLV---APAGPMYQAGTLSGNPLAMTAGIK 312
Query: 739 SIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA 798
+++ + P T + + L + + + Q G +A
Sbjct: 313 TLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDA 372
Query: 799 GYCLIELF 806
++ F
Sbjct: 373 KKSDLQKF 380
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Score = 59.3 bits (142), Expect = 1e-09
Identities = 44/293 (15%), Positives = 82/293 (27%), Gaps = 11/293 (3%)
Query: 500 TTEKCIELKVLALKGSYHG-DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558
+ ++L + G D + A S +G+ + + +
Sbjct: 81 LSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMT 140
Query: 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618
S K V + + F + + SG
Sbjct: 141 GAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSG 200
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678
+ A I EP++ + GG+ + + L ++C+ R + +I DE TG R G
Sbjct: 201 NLAAFIAEPILSS-GGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRD 259
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAK 738
G PDI K L G+ A + + H
Sbjct: 260 GVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFY---TTHVSDPLPAAVGLRVL 316
Query: 739 SIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
+ N++ +R L+ + + V G L +E+
Sbjct: 317 DVVQRDGLVARANVMGDR------LRRGLLDLMERFDCIGDVRGRGLLLGVEI 363
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 39.9 bits (92), Expect = 0.001
Identities = 16/155 (10%), Positives = 35/155 (22%), Gaps = 15/155 (9%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDE------VFTGFWRLGVETTA 675
I+ + + G V + + + IPV+ D + R
Sbjct: 185 PYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDW 244
Query: 676 DLLGCVPDIACY--------GKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYS 727
+ + Y K + L + + +Y
Sbjct: 245 TIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYG 304
Query: 728 AHALGCAAA-AKSIKWFKDPQTNHNIIPERRILRE 761
G A + + I + + L +
Sbjct: 305 GLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVD 339
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 817 | |||
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 100.0 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 100.0 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 100.0 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 100.0 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 100.0 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 100.0 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 100.0 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.96 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.93 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 99.92 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.88 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.77 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.74 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.52 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.4 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.37 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.36 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.35 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.3 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.27 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.24 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.23 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.23 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.21 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.21 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.21 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.19 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.08 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.03 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 99.02 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.01 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.01 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 99.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 98.95 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 98.93 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 98.93 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 98.92 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 98.92 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 98.91 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 98.91 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 98.91 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 98.89 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 98.88 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 98.87 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 98.84 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 98.84 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 98.83 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 98.79 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 98.79 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 98.76 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 98.7 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 98.67 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 98.57 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 98.57 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 98.45 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 98.43 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 98.42 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 98.39 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 98.39 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 98.38 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 98.36 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 98.36 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 98.32 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 98.3 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 98.28 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 98.25 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 98.23 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 98.22 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 98.21 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 98.17 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 98.16 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 98.14 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 98.14 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 98.05 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 97.83 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.7 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.52 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 97.49 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 97.44 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.42 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 97.41 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 97.37 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.32 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.27 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 97.25 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 97.17 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 97.15 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 97.05 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 96.98 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 96.29 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 96.05 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.43 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.41 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 95.39 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.6 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 94.24 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.99 | |
| d1vcoa2 | 272 | CTP synthase PyrG, N-terminal domain {Thermus ther | 93.28 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 92.87 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 92.52 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 91.9 | |
| d2vo1a1 | 273 | CTP synthase PyrG, N-terminal domain {Human (Homo | 91.11 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 90.95 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 90.19 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 90.01 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 89.73 | |
| d1s1ma2 | 266 | CTP synthase PyrG, N-terminal domain {Escherichia | 89.41 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 88.73 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 88.5 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 86.58 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 86.3 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 86.22 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 84.92 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 83.53 | |
| d2gc6a2 | 296 | Folylpolyglutamate synthetase {Lactobacillus casei | 82.8 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 81.81 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 81.48 |
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=568.64 Aligned_cols=382 Identities=26% Similarity=0.372 Sum_probs=312.7
Q ss_pred HHCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 61485323477798789997299991058603898376675445122035652235789989979999999988731555
Q 003472 356 RAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV 435 (817)
Q Consensus 356 ~~~~~l~~P~~~~~~~~~~~p~~i~~~~G~~~~i~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~~ 435 (817)
.+.+|+||||+++... .++.+|++++|.+ +||+||+ +|||+++|+|++++||+ ||+|++|+++|++++.++
T Consensus 8 ~d~~h~~~p~~~~~~~--~p~~~i~~~~G~~--l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~~~~ 78 (429)
T d1s0aa_ 8 FDQRHILHPFTSMTSP--LPVYPVVSAEGCE--LILSDGR----RLVDGMSSWWAAIHGYN-HPQLNAAMKSQIDAMSHV 78 (429)
T ss_dssp HHHHHBCCTTCCSSSC--CCCEEEEEEEBTE--EEETTSC----EEEESSTTTTTCTTCBS-CHHHHHHHHHHHHHCSCC
T ss_pred HHHHHCCCCCCCCCCC--CCCCCEEEEECCE--EEECCCC----EEEECCCCHHHHHHCCC-CHHHHHHHHHHHHHCCCC
T ss_conf 9997668885457888--9986669817899--9979989----99987516987751589-699999999999756775
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 89999996799999999831199986619990786789999999999985302441000248776455552089998187
Q 003472 436 MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS 515 (817)
Q Consensus 436 ~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gs 515 (817)
.+....+++..++++++.+..+.+ +++++|++|||||||+|+|+| |+|++++| ..+.+||+|+++
T Consensus 79 ~~~~~~~~~~~~l~~~l~~~~~~~-~~~v~f~~sGseA~e~A~k~a-r~~~~~~g-------------~~~~~ii~~~~~ 143 (429)
T d1s0aa_ 79 MFGGITHAPAIELCRKLVAMTPQP-LECVFLADSGSVAVEVAMKMA-LQYWQAKG-------------EARQRFLTFRNG 143 (429)
T ss_dssp CCSSEECHHHHHHHHHHHHHSCTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHHT-------------CCCCEEEEETTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCC-CCEEEECCCCCCCHHHHHHHH-HHEEECCC-------------CCCCEEEEECCC
T ss_conf 467756668999999987531357-612664145542013556554-21000024-------------565089981487
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHH
Q ss_conf 44786421112489988776778875687655589842224762121487111100023444445673012210269116
Q 003472 516 YHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595 (817)
Q Consensus 516 yHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~ 595 (817)
|||+|.++++++++..++.. ++.. ..+ .....+.+.... ...++ ...
T Consensus 144 yHG~t~~a~~~t~~~~~~~~----~~~~----~~~-------~~~~~~~~~~~~--------~~~~~----------~~~ 190 (429)
T d1s0aa_ 144 YHGDTFGAMSVCDPDNSMHS----LWKG----YLP-------ENLFAPAPQSRM--------DGEWD----------ERD 190 (429)
T ss_dssp CCCSSHHHHTTSCTTTTTGG----GGTT----TSC-------CCEEECCCCSBC---------CCCC----------GGG
T ss_pred CCCCCHHHHHHCCCCCCCCC----CCCC----CCC-------CCCCCCCCCCCC--------CCCCC----------HHH
T ss_conf 46652444541388533344----5674----311-------231134554233--------34332----------245
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHH
Q ss_conf 89999999999974199988888079999945334689731289889999999976239939985110065655631023
Q 003472 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675 (817)
Q Consensus 596 ~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~ 675 (817)
.+.+++.+. ..++++||||+||+.+++||+++||++|+++|+++|++||++||+|||||||||||++|++
T Consensus 191 -----~~~~~~~~~-----~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~ 260 (429)
T d1s0aa_ 191 -----MVGFARLMA-----AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFAC 260 (429)
T ss_dssp -----GHHHHHHHH-----HHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG
T ss_pred -----HHHHHHHHH-----HCCCCCCEEEECCEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEHHHCCCCCCCCCCCCCC
T ss_conf -----666544565-----3477521266413131678746799899999999998758023613204135502223544
Q ss_pred HHCCCCCCEEECCCCCCCCCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHH
Q ss_conf 00089996220043347888751189822577741128886530000158998789999999999995196701208999
Q 003472 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (817)
Q Consensus 676 e~~gv~PDIitlgK~LggGy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~ 755 (817)
+++|++|||+|+||+|+|||+|+|++++++++++.+.... ...+.|++||++||++||||+++|+++++ +++.++
T Consensus 261 ~~~~v~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~-~~~~~~~~T~~gnp~~~aaa~a~L~~i~~----~~~~~~ 335 (429)
T d1s0aa_ 261 EHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGE-AGCFMHGPTFMGNPLACAAANASLAILES----GDWQQQ 335 (429)
T ss_dssp GGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTST-TSSCSCCCTTTTCHHHHHHHHHHHHHHHT----CHHHHH
T ss_pred CCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC-CCCEEECCCCCCCCCCCHHHHCCCCCCCC----CCCCCH
T ss_conf 3314435412033433210002311245799986237888-76333068778886422221202432113----465302
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 9999999999999998739992419755169999971079777711299999999982989
Q 003472 756 RRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 756 ~~~l~~~l~~~l~~~~~~~p~I~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~G~~ 816 (817)
+++++++|++++.+ ++.++.|.+|||.|+|+++|+..+ .....+...++++|++
T Consensus 336 ~~~~g~~l~~~L~~-l~~~~~v~~vrg~Gl~~~~e~~~~------~~~~~~~~~~~~~Gl~ 389 (429)
T d1s0aa_ 336 VADIEVQLREQLAP-ARDAEMVADVRVLGAIGVVETTHP------VNMAALQKFFVEQGVW 389 (429)
T ss_dssp HHHHHHHHHHHHGG-GGGCTTEEEEEEETTEEEEEESSC------BCHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHHH-HCCCCCEEEEEECCCEEEEEECCC------CCHHHHHHHHHHCCCE
T ss_conf 56899999999998-546996577743164799991584------6599999999979967
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=558.79 Aligned_cols=379 Identities=23% Similarity=0.313 Sum_probs=304.5
Q ss_pred CCHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 50056148532347779878999729999105860389837667544512203565223578998997999999998873
Q 003472 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (817)
Q Consensus 352 ~l~~~~~~~l~~P~~~~~~~~~~~p~~i~~~~G~~~~i~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~ 431 (817)
++.++..+.++..+.+ ..|+++++++|.| +||+||+ +|||+++|+|++++||+ ||+|++|+++|+++
T Consensus 5 ~l~~r~~~~~~~g~~~------~~P~~~~~~~G~~--l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~ai~~q~~~ 71 (425)
T d1sffa_ 5 ELMQRRSQAIPRGVGQ------IHPIFADRAENCR--VWDVEGR----EYLDFAGGIAVLNTGHL-HPKVVAAVEAQLKK 71 (425)
T ss_dssp HHHHHHHHHSCTTBCC------SEEEEEEEEEBTE--EEETTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHTTT
T ss_pred HHHHHHHHHCCCCCCC------CCCCEEEEEECCE--EEECCCC----EEEECCCCHHHHCCCCC-CHHHHHHHHHHHHH
T ss_conf 9999999765898999------9995289976399--9969989----99985718886500489-69999999999864
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 15558999999679999999983119998661999078678999999999998530244100024877645555208999
Q 003472 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (817)
Q Consensus 432 ~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~ 511 (817)
+.+..+....+++..+++++|.+.+|....++++|++|||||||+|+|+| |+|++| ++||+
T Consensus 72 ~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~a-r~~t~r------------------~~ii~ 132 (425)
T d1sffa_ 72 LSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA-RAATKR------------------SGTIA 132 (425)
T ss_dssp CSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHH-HHHHTC------------------CEEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH-HHHHCC------------------CCEEE
T ss_conf 67766653357278999999876553123404665216420246677776-655334------------------63573
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 81874478642111248998877677887568765558984222476212148711110002344444567301221026
Q 003472 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (817)
Q Consensus 512 ~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~ 591 (817)
++++|||+|.+++++++....+.. +.. . .| ......++|.... +.
T Consensus 133 ~~~~yHG~t~~~~~~t~~~~~~~~----~~~----~--~~-----~~~~~~~~~~~~~------------~~-------- 177 (425)
T d1sffa_ 133 FSGAYHGRTHYTLALTGKVNPYSA----GMG----L--MP-----GHVYRALYPCPLH------------GI-------- 177 (425)
T ss_dssp ETTCCCCSSHHHHHHSSCCTTTTT----TSC----C--CC-----SSEEEECCCBGGG------------TB--------
T ss_pred ECCCCCCCCCCCHHHCCCCCCCCC----CCC----C--CC-----CCCCCCCCCCCCC------------CC--------
T ss_conf 358876762321220288776567----754----4--45-----7754567763224------------53--------
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC
Q ss_conf 91168999999999997419998888807999994533468973128988999999997623993998511006565563
Q 003472 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (817)
Q Consensus 592 d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~ 671 (817)
...... ...+..+... ...+++||||+||| |+++|+++||++||+.|+++|++||++||+|||||||||||.
T Consensus 178 -~~~~~~---~~~~~~~~~~---~~~~~vaavi~EPi-~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~ 249 (425)
T d1sffa_ 178 -SEDDAI---ASIHRIFKND---AAPEDIAAIVIEPV-QGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT 249 (425)
T ss_dssp -CHHHHH---HHHHHHHHHT---CCGGGEEEEEECSB-CTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS
T ss_pred -CCHHHH---HHHHHHHHHC---CCCCCEEEEEECCC-CCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCH
T ss_conf -103567---8899998740---23452678986685-478886068779999999999973926986233326777630
Q ss_pred CCHHHHCCCCCCEEECCCCCCCCCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHC
Q ss_conf 10230008999622004334788875118982257774112888653000015899878999999999999519670120
Q 003472 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN 751 (817)
Q Consensus 672 ~~a~e~~gv~PDIitlgK~LggGy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~ 751 (817)
+|+++++|+.|||+|+||+|||| +|+||+++++++++.+... .|++||++||++||||+++|+++++ ++
T Consensus 250 ~~a~~~~gv~PDi~~~gK~l~gG-~P~~av~~~~~i~~~~~~~------~~~~T~~gnpl~~aaa~a~L~~i~~----~~ 318 (425)
T d1sffa_ 250 LFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPG------GLGGTYAGNPIACVAALEVLKVFEQ----EN 318 (425)
T ss_dssp SSGGGGTTSCCSEEEECGGGGTS-SCCEEEEEEHHHHTTSCTT------SBCCSSSSCHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHCCCCCCCEECCCCCCCC-CCEEEEEECHHHHHHHCCC------CCCCCCCCCHHHHHHHHHHHHHHHH----HH
T ss_conf 45788659894404400015787-6508999849999863799------9987988288999999999999998----31
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCC--CCCHHHHHHHHHHHCCCC
Q ss_conf 89999999999999999998739992419755169999971079777--711299999999982989
Q 003472 752 IIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA--GYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 752 l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~Glm~gIel~~~~~~~--~~~~~~~~~~~~l~~G~~ 816 (817)
+.++.+.++++|.+++.+++++++.+.+|||.|+|++|+|.++.... +......+...++++|++
T Consensus 319 ~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl 385 (425)
T d1sffa_ 319 LLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLI 385 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 0124444433445420136750884279970161899999316766775599999999999978988
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=100.00 E-value=0 Score=552.59 Aligned_cols=367 Identities=19% Similarity=0.252 Sum_probs=299.1
Q ss_pred CCEEEEEEECCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 97299991058603898376675445122035652235789989979999999988731555899999967999999998
Q 003472 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (817)
Q Consensus 374 ~~p~~i~~~~G~~~~i~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (817)
..|++|++++|.+ +||.||| +|||+++|+|++++||+ ||+|.+|+++|++++.+.. ..+.+++..+|+++|+
T Consensus 22 ~~P~~i~~a~G~~--l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~-~~~~~~~~~~la~~L~ 93 (431)
T d1zoda1 22 FEPMIIERAKGSF--VYDADGR----AILDFTSGQMSAVLGHC-HPEIVSVIGEYAGKLDHLF-SEMLSRPVVDLATRLA 93 (431)
T ss_dssp CCSSCCCEEEBTE--EECTTCC----EEEETTHHHHTCTTCBT-CHHHHHHHHHHHHHCCCCC-TTCCCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCE--EEECCCC----EEEECCCCHHHHHHCCC-CHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHH
T ss_conf 7897699836499--9979979----99984518886621689-8999999999986345544-5310689999999998
Q ss_pred HHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31199986619990786789999999999985302441000248776455552089998187447864211124899887
Q 003472 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (817)
Q Consensus 454 ~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r 533 (817)
+..+.+ +++|+|++|||||||+|||+| |+|++| ++|++|+++|||+|.+++++++...++
T Consensus 94 ~~~~~~-~~~v~f~~sGseA~e~Alk~A-r~~t~r------------------~~i~~~~~~yHG~t~~~~~~~~~~~~~ 153 (431)
T d1zoda1 94 NITPPG-LDRALLLSTGAESNEAAIRMA-KLVTGK------------------YEIVGFAQSWHGMTGAAASATYSAGRK 153 (431)
T ss_dssp HHSCTT-CCEEEEESCHHHHHHHHHHHH-HHHHTC------------------CEEEEETTCCCCSSHHHHHTCCSSCCS
T ss_pred HHCCCC-CCEEEECCCCCCHHHHHHHHH-HHHCCC------------------CCEEECCCCCCCCCCHHHCCCCCCCCC
T ss_conf 757944-020453145553089999999-984299------------------622203433454100100256653223
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 76778875687655589842224762121487111100023444445673012210269116899999999999741999
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~ 613 (817)
.. ++. ..+..+++.|..+....... .........+.++..+..
T Consensus 154 ~~---------~~~--------~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~--- 196 (431)
T d1zoda1 154 GV---------GPA--------AVGSFAIPAPFTYRPRFERN-----------------GAYDYLAELDYAFDLIDR--- 196 (431)
T ss_dssp SS---------CCC--------CTTEEEECCCCTTSCCCEET-----------------TEECHHHHHHHHHHHHHH---
T ss_pred CC---------CCC--------CCCCEEEEEECCCCCCCCCC-----------------CCHHHHHHHHHHHHHHHH---
T ss_conf 45---------776--------56842554202445653345-----------------401213467788878877---
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCEEECCCCCCC
Q ss_conf 88888079999945334689731289889999999976239939985110065655631023000899962200433478
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDIitlgK~Lgg 693 (817)
.++++|||||+||| ||++|++++|++|+++||++|++||++||+|||||||||||++|+++++|++|||+|+||+|||
T Consensus 197 -~~~~~iAavi~EPi-~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~gK~l~g 274 (431)
T d1zoda1 197 -QSSGNLAAFIAEPI-LSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGA 274 (431)
T ss_dssp -HCCSCEEEEEECSE-ETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHT
T ss_pred -HCCCCCCCEEECCC-CCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC
T ss_conf -40565442232441-0058866799999999999997558658854544556555532453347988633104544456
Q ss_pred CCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88751189822577741128886530000158998789999999999995196701208999999999999999999873
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (817)
| +|++++++++++++.+... .+.|++||++||++|+|++++|+++++ +++.+++..+++++.+.+.+.+.+
T Consensus 275 G-~p~~av~~~~~~~~~~~~~----~~~~~~T~~g~pl~~aaa~a~l~~i~~----~~~~~~~~~~g~~l~~~l~~~~~~ 345 (431)
T d1zoda1 275 G-LPLAAIVTSAAIEERAHEL----GYLFYTTHVSDPLPAAVGLRVLDVVQR----DGLVARANVMGDRLRRGLLDLMER 345 (431)
T ss_dssp T-SSCEEEEECHHHHHHHHHT----TCCCCCTTTTCHHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCCCEEEEEECCHHHHHCC----CCCCCCCCCCCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 6-4211156530110111003----443457777786067999999888643----135677899877776541224531
Q ss_pred CCCCCEEEEEEEEEEEEEECCCCCCCC--CHHHHHHHHHHHCCCC
Q ss_conf 999241975516999997107977771--1299999999982989
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCNAGY--CLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~I~~VrG~Glm~gIel~~~~~~~~~--~~~~~~~~~~l~~G~~ 816 (817)
++.|.+|||.|+|++|||+++.....+ .....+...++++|++
T Consensus 346 ~~~i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~ 390 (431)
T d1zoda1 346 FDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLS 390 (431)
T ss_dssp CTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEE
T ss_pred CCCEEEEEECCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 897578860143999999327765672289999999999984721
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=537.24 Aligned_cols=365 Identities=19% Similarity=0.234 Sum_probs=298.4
Q ss_pred HHCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 52050056148532347779878999729999105860389837667544512203565223578998997999999998
Q 003472 349 RLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYT 428 (817)
Q Consensus 349 ~~~~l~~~~~~~l~~P~~~~~~~~~~~p~~i~~~~G~~~~i~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q 428 (817)
+++++.++..++.||+|. ..|++|++++|.+ +||+||+ +||||++|+|++++||+ ||+|++|+++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~-------p~P~~i~~~~G~~--l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Av~~q 69 (404)
T d2byla1 4 TSDDIFEREYKYGAHNAH-------PLPVALERGKGIY--LWDVEGR----KYFDFLSSISAVNQGHC-HPKIVNALKSQ 69 (404)
T ss_dssp CHHHHHHHHHHHBCSCCC-------CEEEEEEEEEBTE--EEETTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCC-------CCCCEEEEEECCE--EEECCCC----EEEEECCCHHHHHHCCC-CHHHHHHHHHH
T ss_conf 679999998775467889-------8784489845499--9979879----99992688998855379-89999999999
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 87315558999999679999999983119998661999078678999999999998530244100024877645555208
Q 003472 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELK 508 (817)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~ 508 (817)
++++.+... ...+....++++++.++.+ .++++|++|||||||+|+|+| |+++++.+.. ...|.+
T Consensus 70 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~v~~~~sGseA~e~Aik~a-r~~~~~~~~~----------~~~~~~ 134 (404)
T d2byla1 70 VDKLTLTSR-AFYNNVLGEYEEYITKLFN---YHKVLPMNTGVEAGETACKLA-RKWGYTVKGI----------QKYKAK 134 (404)
T ss_dssp HTTCCCCCT-TEEESSHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTTCC----------CTTCCE
T ss_pred HHHCCCCCC-CCCCCHHHHHHHHHHHCCC---CCCCCCCCCCCCCCHHHHHHH-HHHHHHCCCC----------CCCCCC
T ss_conf 964787556-4331049999876543011---332220147666403589999-9876403663----------123112
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 99981874478642111248998877677887568765558984222476212148711110002344444567301221
Q 003472 509 VLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFY 588 (817)
Q Consensus 509 II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~ 588 (817)
|++++++|||+|.++++.++.+.++.+ .+++. +.+..+| |||.
T Consensus 135 i~~~~~~~hg~t~~~~~~~~~~~~~~~--------~~p~~--------~~~~~~p----------------~~d~----- 177 (404)
T d2byla1 135 IVFAAGNFWGRTLSAISSSTDPTSYDG--------FGPFM--------PGFDIIP----------------YNDL----- 177 (404)
T ss_dssp EEEETTCCCCCSHHHHTTCCCHHHHTT--------SCSCC--------TTEEEEC----------------TTCH-----
T ss_pred CCCCCCCCCCCCCCEECCCCCCCCCCC--------CCCCC--------CCEEEEC----------------CCCH-----
T ss_conf 233578845565103405778654557--------78888--------8715734----------------6679-----
Q ss_pred HCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCC
Q ss_conf 02691168999999999997419998888807999994533468973128988999999997623993998511006565
Q 003472 589 EERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668 (817)
Q Consensus 589 ~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGR 668 (817)
+.+++.++ .+++||||+||| |+++|++++|++||++|+++|++||++||+|||||||||
T Consensus 178 -------------~~l~~~l~-------~~~iAaviiEPi-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR 236 (404)
T d2byla1 178 -------------PALERALQ-------DPNVAAFMVEPI-QGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLAR 236 (404)
T ss_dssp -------------HHHHHHHT-------STTEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred -------------HHHHHHCC-------CCCEEEEEECCC-CCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCC
T ss_conf -------------99998557-------998699997884-388897149999999999999862807996046536463
Q ss_pred CCCCCHHHHCCCCCCEEECCCCCCCCCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 56310230008999622004334788875118982257774112888653000015899878999999999999519670
Q 003472 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQT 748 (817)
Q Consensus 669 tG~~~a~e~~gv~PDIitlgK~LggGy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~ 748 (817)
||++|+++++|++|||+|+||+|+||++|+|++++++++++.+.. ..|++||+|||++||||+++|+++++
T Consensus 237 ~G~~~a~~~~gv~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~------~~~~~T~~gnpl~~aaa~a~L~~i~~--- 307 (404)
T d2byla1 237 TGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKP------GEHFSTYGGNPLGCRVAIAALEVLEE--- 307 (404)
T ss_dssp TSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCT------TSSCCSSTTCHHHHHHHHHHHHHHHH---
T ss_pred CCCCCHHHHCCCCCCEEEECCHHHCCCCCCEEEEECHHHHHCCCC------CCCCCCCCCCHHHHHHHHHHHHHHHH---
T ss_conf 553333654699988999774646898662104521023312578------88785988699999999999999985---
Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 12089999999999999999998739992419755169999971079777711299999999982989
Q 003472 749 NHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 749 ~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~G~~ 816 (817)
+++.++.+.++.+|.+.+.++ ..+.+.+|||.|+|++|++.+.. ......+..+++++|++
T Consensus 308 -~~l~~~~~~~g~~l~~~l~~l--~~~~i~~vRg~Gl~~~i~~~~~~----~~~~~~~~~~l~~~Gvl 368 (404)
T d2byla1 308 -ENLAENADKLGIILRNELMKL--PSDVVTAVRGKGLLNAIVIKETK----DWDAWKVCLRLRDNGLL 368 (404)
T ss_dssp -TTHHHHHHHHHHHHHHHHHTS--CTTTEEEEEEETTEEEEEECCCS----SCCHHHHHHHHHHTTEE
T ss_pred -CCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEECCCEEEEEEECCC----CHHHHHHHHHHHHCCEE
T ss_conf -470356667668899999960--13663135624628999982688----61299999999969919
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=527.05 Aligned_cols=335 Identities=20% Similarity=0.246 Sum_probs=279.5
Q ss_pred CEEEEEEECCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 72999910586038983766754451220356522357899899799999999887315558999999679999999983
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~~i~~~~G~~~~i~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|++|++++|.| +||.||| +|||+++|+|++++||+ ||+|.+|+++|++++.+.. ..+.+++..+++++|.+
T Consensus 19 ~p~~i~ra~G~~--l~d~dG~----~ylD~~~g~~~~~lGh~-hp~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~ 90 (387)
T d1vefa1 19 HDLLIVRGQGAR--VWDAEGN----EYIDCVGGYGVANLGHG-NPEVVEAVKRQAETLMAMP-QTLPTPMRGEFYRTLTA 90 (387)
T ss_dssp CSSCEEEEEBTE--EEETTSC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHHHHCCCCC-TTSCCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCE--EEECCCC----EEEECCHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHH
T ss_conf 983189847499--9979879----99984641876655289-6999999999997636466-65577059999987653
Q ss_pred HCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11999866199907867899999999999853024410002487764555520899981874478642111248998877
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~ 534 (817)
..+.+ .++++|++|||||||+|+|+| |.|+++ .+||+++++|||+|.+++++|+.+.++.
T Consensus 91 ~~~~~-~~~v~f~~sGseA~e~Aik~A-r~~t~r------------------~~ii~~~~~yHG~t~~~~~~s~~~~~~~ 150 (387)
T d1vefa1 91 ILPPE-LNRVFPVNSGTEANEAALKFA-RAHTGR------------------KKFVAAMRGFSGRTMGSLSVTWEPKYRE 150 (387)
T ss_dssp TSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHSC------------------CEEEEETTCCCCSSHHHHHTCCCHHHHG
T ss_pred HCCCC-CEEECCCCCCHHHHHHHHHHH-HHHCCC------------------CEECCCCCCCCCCCCCEEECCCCCCCCC
T ss_conf 02321-011112467267999999998-761133------------------1232565688999612386347865567
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 67788756876555898422247621214871111000234444456730122102691168999999999997419998
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~ 614 (817)
++ .+.. ....++| |||. +.+++.++
T Consensus 151 ~~--------~p~~--------~~~~~~p----------------~~d~------------------~~l~~~~~----- 175 (387)
T d1vefa1 151 PF--------LPLV--------EPVEFIP----------------YNDV------------------EALKRAVD----- 175 (387)
T ss_dssp GG--------CSCS--------SCEEEEC----------------TTCH------------------HHHHHHCC-----
T ss_pred CC--------CCCC--------CCCEEEC----------------CCCH------------------HHHHHHCC-----
T ss_conf 88--------7889--------9826868----------------8979------------------99997568-----
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCEEECCCCCCCC
Q ss_conf 88880799999453346897312898899999999762399399851100656556310230008999622004334788
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDIitlgK~LggG 694 (817)
+++||||+||| |+++|+++++++||++|+++|++||++||+|||||||||||++|+++++|++|||+|+||+||||
T Consensus 176 ---~~iAavi~EPi-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~~gK~l~gG 251 (387)
T d1vefa1 176 ---EETAAVILEPV-QGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGG 251 (387)
T ss_dssp ---TTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTT
T ss_pred ---CCEEEEEEECC-CCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC
T ss_conf ---97479999787-78888864998999999999997692698400222467467776544678377633313257887
Q ss_pred CCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 87511898225777411288865300001589987899999999999951967012089999999999999999998739
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (817)
+|++++++++++++.+.. +.|++||++||++|+||+++|++++++++ .++.+.++.+|.+++.++ .+
T Consensus 252 -~~~~~~~~~~~~~~~~~~------~~~g~T~~gnPla~aaa~a~L~~l~~~~~----~~~v~~~g~~l~~~L~~l--~~ 318 (387)
T d1vefa1 252 -VPLGVAVMREEVARSMPK------GGHGTTFGGNPLAMAAGVAAIRYLERTRL----WERAAELGPWFMEKLRAI--PS 318 (387)
T ss_dssp -SSCEEEEEEHHHHHTSCT------TSSCCSSTTCHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHTS--CC
T ss_pred -CCCCCCCCCEEEEECCCC------CCCCCCCCCCCCHHHHCCCCHHHCCCCCC----CCHHHHHHHHHHHHHHHC--CC
T ss_conf -666332221023102236------88355379986300101120001033322----205766507899999861--79
Q ss_pred CCCCEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 992419755169999971079777711299999999982989
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~I~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~G~~ 816 (817)
+.|.+|||.|+|++|+|.++ ....+...++++|++
T Consensus 319 ~~v~~vrg~Gl~~~ie~~~~-------~~~~~~~~~~~~g~l 353 (387)
T d1vefa1 319 PKIREVRGMGLMVGLELKEK-------AAPYIARLEKEHRVL 353 (387)
T ss_dssp TTEEEEEEETTEEEEEESSC-------SHHHHHHHHHHHCEE
T ss_pred CCEEEEEECCEEEEEEEECC-------CHHHHHHHHHHCCCE
T ss_conf 84578852146999998277-------469999999978975
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=100.00 E-value=0 Score=520.98 Aligned_cols=354 Identities=16% Similarity=0.208 Sum_probs=289.6
Q ss_pred CCEEEEEEECCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 97299991058603898376675445122035652235789989979999999988731555899999967999999998
Q 003472 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (817)
Q Consensus 374 ~~p~~i~~~~G~~~~i~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (817)
..|.++++++|.+ +||+||+ +|||+++|+|++++||+ ||+|++|+++|++++.+.. ..+....++++++.
T Consensus 33 ~~P~~i~~a~G~~--l~D~~G~----~ylD~~~~~~~~~lGh~-hp~i~~ai~~~~~~~~~~~---~~~~~~~~la~~~~ 102 (427)
T d2gsaa_ 33 GQPIVFDRVKDAY--AWDVDGN----RYIDYVGTWGPAICGHA-HPEVIEALKVAMEKGTSFG---APCALENVLAEMVN 102 (427)
T ss_dssp SCCCCEEEEEBTE--EEETTSC----EEEESSGGGTTTTTCBT-CHHHHHHHHHHHTTCSCCS---SCCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCE--EEECCCC----EEEEECHHHHHHHCCCC-CHHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHH
T ss_conf 9984799835598--9979889----99970631897830689-4999999999998557654---30457999999887
Q ss_pred HHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31199986619990786789999999999985302441000248776455552089998187447864211124899887
Q 003472 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (817)
Q Consensus 454 ~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r 533 (817)
+..+. .++++|++||+||||+|+|+| |.|++| ++||+|+++|||+|.+++++++...++
T Consensus 103 ~~~~~--~~~v~f~~sGseA~e~Alk~a-r~~t~r------------------~~ii~~~~~yHG~t~~~~~~~~~~~~~ 161 (427)
T d2gsaa_ 103 DAVPS--IEMVRFVNSGTEACMAVLRLM-RAYTGR------------------DKIIKFEGCYHGHADMFLVKAGSGVAT 161 (427)
T ss_dssp HHSTT--CSEEEEESSHHHHHHHHHHHH-HHHHCC------------------CEEEEETTCCCCSCGGGCSSCCHHHHH
T ss_pred HHCCC--CCCCCCCCCCHHHHHHHHHHH-HHHCCC------------------CEEEEEECCCCCCCCEEEEECCCCCCC
T ss_conf 50876--555510487179999999999-972199------------------869998252246766012206886434
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 76778875687655589842224762121487111100023444445673012210269116899999999999741999
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~ 613 (817)
.. .|. .|. ....+.++.. ..+++| .+.+++.++
T Consensus 162 ~~--~p~---------~~~------~~~~~~~~~~--------~~~~~~------------------~~~le~~~~---- 194 (427)
T d2gsaa_ 162 LG--LPS---------SPG------VPKKTTANTL--------TTPYND------------------LEAVKALFA---- 194 (427)
T ss_dssp TT--CCS---------CSS------SCHHHHTTEE--------EECTTC------------------HHHHHHHHT----
T ss_pred CC--CCC---------CCC------CCCCCCCCEE--------CCCCCH------------------HHHHHHHHH----
T ss_conf 68--998---------888------8666766400--------367003------------------999999997----
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCEEECCCCCCC
Q ss_conf 88888079999945334689731289889999999976239939985110065655631023000899962200433478
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDIitlgK~Lgg 693 (817)
++++++||||+||| |+++|+++||++||+.|+++|++||++||+||||||| |+|++|+++++|+.|||+|+||+++|
T Consensus 195 -~~~~~iaavi~Epi-~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~-r~g~~~~~~~~gi~PDi~~~gK~lgg 271 (427)
T d2gsaa_ 195 -ENPGEIAGVILEPI-VGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGKIIGG 271 (427)
T ss_dssp -TSTTTEEEEEECSS-BCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTCHHHHTTCCCSEEEECGGGGT
T ss_pred -HCCCCEEEEEECCC-CCCCCCCCCCHHHHHHHHHHHHHHCEEEEECCCCCCC-EECCCCHHHHCCCCHHHHHHHHCCCC
T ss_conf -58997699997077-5889983499999999999998743655410454443-04366368763997787755311689
Q ss_pred CCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88751189822577741128886530000158998789999999999995196701208999999999999999999873
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (817)
| +|++++++++++++.+... ..+.|++||++||++||||+++|+++++ +++.++.+.++++|.+.+.++.++
T Consensus 272 G-~p~~a~~~~~~i~~~~~~~---~~~~~~~T~~gnpla~AAala~Le~i~~----~~l~~~~~~~g~~l~~~L~~l~~~ 343 (427)
T d2gsaa_ 272 G-LPVGAYGGKREIMQLVAPA---GPMYQAGTLSGNPLAMTAGIKTLELLRQ----PGTYEYLDQITKRLSDGLLAIAQE 343 (427)
T ss_dssp T-SCCEEEEECHHHHTTBTTT---SSBCCCCTTTTCHHHHHHHHHHHHHHTS----TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCEEEEEEHHHHHHHHCCC---CCCCCCCCCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8-4036564239999873335---7776778878874366777776677643----347766667888988887877765
Q ss_pred CCCCCEEEEEEEEEEEEEECCCCC-------CCCCHHHHHHHHHHHCCCC
Q ss_conf 999241975516999997107977-------7711299999999982989
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCN-------AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~I~~VrG~Glm~gIel~~~~~~-------~~~~~~~~~~~~~l~~G~~ 816 (817)
++....|++.|.|+++++....-. .+.+....+...++++||+
T Consensus 344 ~~~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~Gv~ 393 (427)
T d2gsaa_ 344 TGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIY 393 (427)
T ss_dssp TTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEE
T ss_pred CCCCCEECCCCCEEEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHCCEE
T ss_conf 59971775528768999724677797886126499999999999979979
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=100.00 E-value=0 Score=517.47 Aligned_cols=363 Identities=19% Similarity=0.276 Sum_probs=294.7
Q ss_pred CCHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 50056148532347779878999729999105860389837667544512203565223578998997999999998873
Q 003472 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (817)
Q Consensus 352 ~l~~~~~~~l~~P~~~~~~~~~~~p~~i~~~~G~~~~i~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~ 431 (817)
++.+.+.++.+|+|+. .|++|++++|.+ +||.||| +|||+++|+|+++|||+ ||+|++|+++|+++
T Consensus 5 ~~~~~~~~~~~~~y~p-------~P~~i~~a~G~~--l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~ 70 (404)
T d1z7da1 5 DYINNELKYGAHNYDP-------IPVVLKRAKGVF--VYDVNDK----RYYDFLSAYSSVNQGHC-HPNILNAMINQAKN 70 (404)
T ss_dssp HHHHHHHHHBCCCCCC-------EEEEEEEEEBTE--EEETTCC----EEEESSHHHHTTTTCBT-CHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCCC-------CCCEEEEEECCE--EEECCCC----EEEECCCCHHHHHHHCC-CHHHHHHHHHHHHH
T ss_conf 9997787617888999-------885699946388--9979989----99983306887846259-69999999999985
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 15558999999679999999983119998661999078678999999999998530244100024877645555208999
Q 003472 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (817)
Q Consensus 432 ~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~ 511 (817)
+.++.. .+.+.+..++++.+.+..+ .++++|++||++||++|+|+| |+++.+.... ...+.+|++
T Consensus 71 ~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~v~~~~sgs~a~~~a~k~a-r~~~~~~~~~----------~~~~~~~~~ 135 (404)
T d1z7da1 71 LTICSR-AFFSVPLGICERYLTNLLG---YDKVLMMNTGAEANETAYKLC-RKWGYEVKKI----------PENMAKIVV 135 (404)
T ss_dssp CSCCCT-TSEEHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTSCC----------CTTCCEEEE
T ss_pred CCCCCC-CCCHHHHHHHHHHHHHCCC---CCEEEEECCCCCHHHHHHHHH-HHHHHHCCCC----------CCCCCCCCC
T ss_conf 788666-5102799999974443144---330244102430377899999-9887521344----------322244222
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 81874478642111248998877677887568765558984222476212148711110002344444567301221026
Q 003472 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (817)
Q Consensus 512 ~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~ 591 (817)
++++|||.+.++++.++...++.. + ++.. ....+++ +++.
T Consensus 136 ~~~~~hg~~~~~~~~~~~~~~~~~----~----~~~~--------~~~~~~~----------------~~~~-------- 175 (404)
T d1z7da1 136 CKNNFSGRTLGCISASTTKKCTSN----F----GPFA--------PQFSKVP----------------YDDL-------- 175 (404)
T ss_dssp ETTC------------------------------------------CEEEEC----------------TTCH--------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC----C----CCCC--------CCCCCCC----------------CCHH--------
T ss_conf 224578874433345655445567----7----8887--------6300236----------------6568--------
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC
Q ss_conf 91168999999999997419998888807999994533468973128988999999997623993998511006565563
Q 003472 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (817)
Q Consensus 592 d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~ 671 (817)
+.++..+. .+++||||+||| |+++|+++||++||++|+++|++||++||+|||||||||||+
T Consensus 176 ----------~~l~~~~~-------~~~iAavi~EPi-~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~ 237 (404)
T d1z7da1 176 ----------EALEEELK-------DPNVCAFIVEPI-QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK 237 (404)
T ss_dssp ----------HHHHHHHT-------STTEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred ----------HHHHHHHC-------CCCEEEEEEEEE-CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC
T ss_conf ----------99999706-------997799999778-388897409999999999999881978999767547774434
Q ss_pred CCHHHHCCCCCCEEECCCCCCCCCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHC
Q ss_conf 10230008999622004334788875118982257774112888653000015899878999999999999519670120
Q 003472 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN 751 (817)
Q Consensus 672 ~~a~e~~gv~PDIitlgK~LggGy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~ 751 (817)
+|+++++|++|||+|+||+|+||++|+|++++++++++.+.. ..|++||++||++|+|++++|+++++ ++
T Consensus 238 ~~~~e~~gv~PDivt~gK~l~gG~~p~~~v~~~~~i~~~~~~------~~~~~T~~gnpl~~aaa~a~L~~~~~----~~ 307 (404)
T d1z7da1 238 LLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKP------GEHGSTYGGNPLAASICVEALNVLIN----EK 307 (404)
T ss_dssp SSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCT------TCCCCTTTTCHHHHHHHHHHHHHHHH----TT
T ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCC------CCCCCCCCCCCCHHHHHHHHHHHHHC----CH
T ss_conf 345000598877788723112898875544563998714789------98576889895013555544344300----00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 89999999999999999998739992419755169999971079777711299999999982989
Q 003472 752 IIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 752 l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~G~~ 816 (817)
+.++..+.++.+.+.+.+.+++++.|.+|||.|+|++|+|.++. .....+..+++++|++
T Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~-----~~~~~~~~~l~~~Gl~ 367 (404)
T d1z7da1 308 LCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL-----VNVLDICLKLKENGLI 367 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT-----CCHHHHHHHHHHTTEE
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEECCCC-----CCHHHHHHHHHHCCEE
T ss_conf 34430010157899999997569972788752719999974886-----5599999999969938
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=526.28 Aligned_cols=376 Identities=16% Similarity=0.139 Sum_probs=279.6
Q ss_pred CEEEEEEECCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC----CHHHHHHHH
Q ss_conf 7299991058603898376675445122035652235789989979999999988731555899999----967999999
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV----YEPALECAE 450 (817)
Q Consensus 375 ~p~~i~~~~G~~~~i~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~~~~~~~~----~~~~~eLae 450 (817)
.|+++++++|.+ +||+||+ +|||+++|+|++++||+ ||+|++|+.+|+++..+...+... ...+.+|++
T Consensus 35 ~p~~~~~g~G~~--l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~~a~~lae 107 (461)
T d1ohwa_ 35 FFCNYEESRGNY--LVDVDGN----RMLDLYSQISSIPIGYS-HPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRE 107 (461)
T ss_dssp CCBCTTTCBBTE--EEBTTSC----EEEESSHHHHTCSSCBT-CHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHH
T ss_pred CCEEEEEEECCE--EEECCCC----EEEECCCCHHHHHHCCC-CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 881799925378--9989979----99986559987766289-2999999999983521012542255556899999999
Q ss_pred HHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCC--------CCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 99831199986619990786789999999999985302441000248--------7764555520899981874478642
Q 003472 451 LLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG--------KDTTEKCIELKVLALKGSYHGDTLG 522 (817)
Q Consensus 451 ~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~--------~~~~~~~~r~~II~~~gsyHG~t~g 522 (817)
+|.+..+.+ +++|+|++|||||||+|||+| |.|++.++....... .......+|.+||+|+++|||+|.+
T Consensus 108 ~l~~~~~~~-~~~v~f~~sGseAve~Aik~A-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~ 185 (461)
T d1ohwa_ 108 SLLSVAPKG-MSQLITMACGSCSNENAFKTI-FMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMG 185 (461)
T ss_dssp TGGGGCCTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHH
T ss_pred HHHHHHCCC-CCEEEEECCHHHHHHHHHHHH-HHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCC
T ss_conf 987521258-543665032035669999999-997651156754210000122221014578885499805875777755
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHH
Q ss_conf 11124899887767788756876555898422247621214871111000234444456730122102691168999999
Q 003472 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602 (817)
Q Consensus 523 alslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~ 602 (817)
++++|+...++..+ .+..+.+... ....+.|... +. .+.+.....+.+
T Consensus 186 a~s~tg~~~~~~~~--------~~~~~~~~~~----~~~~~~~~~~-----------~~---------~~~~~~~~~~~~ 233 (461)
T d1ohwa_ 186 CLATTHSKAIHKID--------IPSFDWPIAP----FPRLKYPLEE-----------FV---------KENQQEEARCLE 233 (461)
T ss_dssp HHHTCCSCHHHHTT--------CCCCCCCEEC----CCCCCSSGGG-----------CH---------HHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCC--------CCCCCCCCCC----CCCCCCCCCC-----------CC---------CCCCHHHHHHHH
T ss_conf 40256884434566--------4445776665----4221245322-----------35---------554102333588
Q ss_pred HHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCCCC-
Q ss_conf 9999974199988888079999945334689731289889999999976239939985110065655631023000899-
Q 003472 603 YISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV- 681 (817)
Q Consensus 603 ~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~- 681 (817)
.+++.+.... .+++++||||+||| ||++|++++|++||++|+++|++||++||+|||||||||||++|+++++|+.
T Consensus 234 ~l~~~~~~~~--~~~~~iAavivEPi-~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~ 310 (461)
T d1ohwa_ 234 EVEDLIVKYR--KKKKTVAGIIVEPI-QSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDD 310 (461)
T ss_dssp HHHHHHHHHH--HTTCCEEEEEECSS-BCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSS
T ss_pred HHHHHHHHHH--HCCCCCCEEEECCC-CCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999987--37875304553121-23565467215678899999886376334013555334432100112345444
Q ss_pred -CCEEECCCCCCCCCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHH
Q ss_conf -9622004334788875118982257774112888653000015899878999999999999519670120899999999
Q 003472 682 -PDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILR 760 (817)
Q Consensus 682 -PDIitlgK~LggGy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~ 760 (817)
|||+|+||+|+||++|.+++ +... .++.|++||++||++|++|+++|+++++ +++.++++.++
T Consensus 311 ~PDiv~~gK~l~~g~~~~~~~------~~~~------~~~~~~~T~~g~p~~~aaa~a~l~~i~~----~~l~~~~~~~g 374 (461)
T d1ohwa_ 311 PADVMTFSKKMMTGGFFHKEE------FRPN------APYRIFNTWLGDPSKNLLLAEVINIIKR----EDLLSNAAHAG 374 (461)
T ss_dssp CCSEEEECGGGSSEEEEECGG------GSCS------STTSSCCSCSSCHHHHHHHHHHHHHHHH----TTHHHHHHHHH
T ss_pred CCHHHHHHHCCCCCCCCCCCC------CCCC------CCCCCCCCCCCCCCCCHHHCCCCHHHHH----HHHHHHHHHHH
T ss_conf 710444331013355410012------2334------5532223333333210011032023431----26999999999
Q ss_pred HHHHHHHHHHHHCCC-CCCEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 999999999987399-92419755169999971079777711299999999982989
Q 003472 761 ELWDLELIQQISSHR-TVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 761 ~~l~~~l~~~~~~~p-~I~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~G~~ 816 (817)
++|.+++.++..++| .|++|||.|+|++||+.++ +....+...++++|++
T Consensus 375 ~~l~~~l~~l~~~~~~~i~~vrG~Gl~~~ie~~~~------~~~~~i~~~~~~~Gll 425 (461)
T d1ohwa_ 375 KVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDE------SIRNKLISIARNKGVM 425 (461)
T ss_dssp HHHHHHHHHHHHHCTTTCEEEEEETTEEEEECSSH------HHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCCH------HHHHHHHHHHHHCCEE
T ss_conf 99999999997468883677662108999982887------9999999999979959
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.9e-37 Score=249.22 Aligned_cols=315 Identities=13% Similarity=0.081 Sum_probs=225.6
Q ss_pred EEEEEECCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC----CCCHHHHHHHHHH
Q ss_conf 999910586038983766754451220356522357899899799999999887315558999----9996799999999
Q 003472 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPE----NVYEPALECAELL 452 (817)
Q Consensus 377 ~~i~~~~G~~~~i~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~~~~~~----~~~~~~~eLae~L 452 (817)
.++++++|.+ +||.||+ +||||+| |++||++.||+|++|+++++++++.....+ ...+...+|+++|
T Consensus 29 ~~i~~~~g~~--v~~~dG~----~~l~f~s---~dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~l 99 (401)
T d1fc4a_ 29 RIITSAQQAD--ITVADGS----HVINFCA---NNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKL 99 (401)
T ss_dssp CCBCSCSSSE--EEBTTSC----EEEECCC---SCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHH
T ss_pred EECCCCCCCE--EEECCCC----EEEEEEC---CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHH
T ss_conf 3304788884--8934998----8999876---54025468999999999999981988654213125708899999988
Q ss_pred HHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 83119998661999078678999999999998530244100024877645555208999818744786421112489988
Q 003472 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (817)
Q Consensus 453 ~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~ 532 (817)
+++++ .+.+++++||++||.++++.. .++.++|..+...|.++..++..+.....
T Consensus 100 A~~~g---~e~al~~~SG~~An~~~i~~l----------------------~~~~d~i~~d~~~h~s~~~G~~~~~a~~~ 154 (401)
T d1fc4a_ 100 AAFLG---MEDAILYSSCFDANGGLFETL----------------------LGAEDAIISDALNHASIIDGVRLCKAKRY 154 (401)
T ss_dssp HHHHT---CSEEEEESCHHHHHHTTHHHH----------------------CCTTCEEEEETTCCHHHHHHHHTSCSEEE
T ss_pred HHHHC---CCCEEEECCHHHHHHHHHHHH----------------------CCCCCEEEECCCCHHHHHCCCCCCCCEEE
T ss_conf 87616---774477344456667899974----------------------57886899677643888705122575079
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 77677887568765558984222476212148711110002344444567301221026911689999999999974199
Q 003472 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (817)
Q Consensus 533 r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~ 612 (817)
+ ..|+|.+ . .+.+.+.+..
T Consensus 155 ~--------------------------------------------~~~~d~~----------~-----le~~~~~~~~-- 173 (401)
T d1fc4a_ 155 R--------------------------------------------YANNDMQ----------E-----LEARLKEARE-- 173 (401)
T ss_dssp E--------------------------------------------ECTTCHH----------H-----HHHHHHHHHH--
T ss_pred E--------------------------------------------ECCCCHH----------H-----HHHHHHHHHH--
T ss_conf 9--------------------------------------------7578847----------8-----9999998551--
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC--CCHHHHCCCC--CCEE--E
Q ss_conf 98888807999994533468973128988999999997623993998511006565563--1023000899--9622--0
Q 003472 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCV--PDIA--C 686 (817)
Q Consensus 613 ~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~--~~a~e~~gv~--PDIi--t 686 (817)
.+...+.|++|+| +++.|...| +++++++|++||++||+||+|+ +|+.|. .+..+++++. +||+ |
T Consensus 174 ---~~~~~~liv~egv-~s~~G~~~~----L~~l~~L~~~~~a~LivDeah~-~g~~g~~G~G~~~~~~~~~~~dii~~t 244 (401)
T d1fc4a_ 174 ---AGARHVLIATDGV-FSMDGVIAN----LKGVCDLADKYDALVMVDDSHA-VGFVGENGRGSHEYCDVMGRVDIITGT 244 (401)
T ss_dssp ---TTCSSEEEEEESE-ETTTTEECC----HHHHHHHHHHTTEEEEEECTTT-TTTSSTTSCCHHHHTTCTTCCSEEEEE
T ss_pred ---CCCCCEEEEECCC-CCCCCCHHH----HHHHHHHHHHCCCEEEEHHHHC-CCCCCCCCCCCCHHCCCCCCCEEEEEE
T ss_conf ---4567159997577-789895565----0578988754281898002101-451457998501012688887299965
Q ss_pred CCCCCCCCCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCC-CCCHHCHHHHHHHHHHHHHH
Q ss_conf 04334788875118982257774112888653000015899878999999999999519-67012089999999999999
Q 003472 687 YGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIPERRILRELWDL 765 (817)
Q Consensus 687 lgK~LggGy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~-~~~~~~l~~~~~~l~~~l~~ 765 (817)
++|+++ | .+-+++++++++++.+....+ .+.++.+.+|..+++++++++.+.+ +++.+++.++.+++.+.
T Consensus 245 l~Ka~g-g-~~Gg~v~g~~~~~~~l~~~~~----~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~--- 315 (401)
T d1fc4a_ 245 LGKALG-G-ASGGYTAARKEVVEWLRQRSR----PYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQ--- 315 (401)
T ss_dssp SSSTTC-S-SSCEEEEECHHHHHHHHHHCH----HHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---
T ss_pred CCCCCC-C-CCCCCCCCCHHHHHHHHCCCH----HHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH---
T ss_conf 143015-6-776111378789999871792----6650678887889988754312346899999999878999864---
Q ss_pred HHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 999998739992419755169999971079777711299999999982989
Q 003472 766 ELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 766 ~l~~~~~~~p~I~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~G~~ 816 (817)
+... ..+... ..+-+..+.+.+. ..+..+.+.++++|++
T Consensus 316 -l~~~--g~~~~~---~~~pIv~v~~~~~------~~a~~~~~~L~~~Gi~ 354 (401)
T d1fc4a_ 316 -MSAA--GFTLAG---ADHAIIPVMLGDA------VVAQKFARELQKEGIY 354 (401)
T ss_dssp -HHHT--TCCBCC---SSSSEEEEEEECH------HHHHHHHHHHHHTTEE
T ss_pred -HCCC--CCCCCC---CCCCEEEEEECCH------HHHHHHHHHHHHCCCE
T ss_conf -0135--876379---9998799997999------9999999999978905
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.7e-32 Score=217.58 Aligned_cols=312 Identities=13% Similarity=0.048 Sum_probs=223.0
Q ss_pred EEEEECCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC----CCCCCCHHHHHHHHHHH
Q ss_conf 99910586038983766754451220356522357899899799999999887315558----99999967999999998
Q 003472 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLL 453 (817)
Q Consensus 378 ~i~~~~G~~~~i~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~ 453 (817)
+++++.|.+ +. .||+ +|+||+| |++||.+.||++++|+.+++++++... ...+.++.+.+|+++|+
T Consensus 24 ~~~~~~g~~--i~-~~g~----~~l~f~s---~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA 93 (383)
T d1bs0a_ 24 PVAQGAGRW--LV-ADDR----QYLNFSS---NDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELA 93 (383)
T ss_dssp CCSBCSSSE--EE-ETTE----EEEECSC---CCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHH
T ss_pred CCCCCCCCE--EE-ECCE----EEEEEEC---CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 457888876--99-8996----8999876---530266789899999999999838988765534674068999999998
Q ss_pred HHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31199986619990786789999999999985302441000248776455552089998187447864211124899887
Q 003472 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (817)
Q Consensus 454 ~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r 533 (817)
++++. +.+++++||+.||.+++... ..+..+|..+...|.+...+...++...
T Consensus 94 ~~~g~---e~al~~~SG~~an~~~i~al----------------------~~~~d~v~~d~~~h~si~~g~~~~~~~~-- 146 (383)
T d1bs0a_ 94 EWLGY---SRALLFISGFAANQAVIAAM----------------------MAKEDRIAADRLSHASLLEAASLSPSQL-- 146 (383)
T ss_dssp HHHTC---SEEEEESCHHHHHHHHHHHH----------------------CCTTCEEEEETTCCHHHHHHHHTSSSEE--
T ss_pred HHCCC---CCEEEECCCCHHHHHHHHHH----------------------CCCCCEEEEECCCCHHHHHCCCCCCCCC--
T ss_conf 75199---83588604422467778760----------------------6998668850455287763423578752--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 76778875687655589842224762121487111100023444445673012210269116899999999999741999
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~ 613 (817)
+.+ .|||+ +.+++.+..
T Consensus 147 ----------------------------~~~--------------~hnd~------------------~~le~~l~~--- 163 (383)
T d1bs0a_ 147 ----------------------------RRF--------------AHNDV------------------THLARLLAS--- 163 (383)
T ss_dssp ----------------------------EEE--------------CTTCH------------------HHHHHHHHS---
T ss_pred ----------------------------EEE--------------CCHHH------------------HHHHHHHCC---
T ss_conf ----------------------------573--------------40578------------------899998414---
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC--CCHHHHCCCCCCEE--ECCC
Q ss_conf 8888807999994533468973128988999999997623993998511006565563--10230008999622--0043
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVPDIA--CYGK 689 (817)
Q Consensus 614 ~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~--~~a~e~~gv~PDIi--tlgK 689 (817)
...+...|++|++ .++.|.+.| ++++.++|++||+++|+||+|+ +|-.|+ .+..+++++.+|++ ++||
T Consensus 164 --~~~~~~~vv~e~v-~s~~G~i~p----l~~l~~l~~~~~~~livDeah~-~gv~G~~g~G~~~~~~~~~~~~~~t~~k 235 (383)
T d1bs0a_ 164 --PCPGQQMVVTEGV-FSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHG-TGVIGEQGRGSCWLQKVKPELLVVTFGK 235 (383)
T ss_dssp --CCSSCEEEEEESB-CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSSGGGCCHHHHTTCCCSEEEEESSS
T ss_pred --CCCCCEEEEECCC-CCCCCCCCC----HHHHHHHHHHCCCEEEEECCEE-EEECCCCCCCHHHHCCCCCCCCCCCCCC
T ss_conf --5777449996578-787772331----5679999886491998303123-2103776645587717742112452122
Q ss_pred CCCCCCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHH
Q ss_conf 34788875118982257774112888653000015899878999999999999519670120899999999999999999
Q 003472 690 LLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQ 769 (817)
Q Consensus 690 ~LggGy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~ 769 (817)
+++. +.+.++++.++.+.+...++ .+.+|.+.+|..+++++++++++++.+... ...+-.....++. +
T Consensus 236 a~g~---~Gg~v~~~~~~~~~l~~~~~----~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~-~~~~l~~~~~~~~----~ 303 (383)
T d1bs0a_ 236 GFGV---SGAAVLCSSTVADYLLQFAR----HLIYSTSMPPAQAQALRASLAVIRSDEGDA-RREKLAALITRFR----A 303 (383)
T ss_dssp TTSS---CCEEEEECHHHHHHHHHHCH----HHHSSBCCCHHHHHHHHHHHHHHHSHHHHH-HHHHHHHHHHHHH----H
T ss_pred CCCC---CCCCCCCCHHHHHHHHHHCH----HHHHCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----H
T ss_conf 3346---55420032167789986044----666424432068999999999998502578-8888888899998----7
Q ss_pred HHHCCCCCCEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 98739992419755169999971079777711299999999982989
Q 003472 770 QISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 770 ~~~~~p~I~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~G~~ 816 (817)
.+++.+.. -+.+..-+..|.+.++ +.+..+.+.++++|++
T Consensus 304 ~l~~~g~~-~~~~~s~Ii~v~~g~~------~~a~~~~~~L~~~Gi~ 343 (383)
T d1bs0a_ 304 GVQDLPFT-LADSCSAIQPLIVGDN------SRALQLAEKLRQQGCW 343 (383)
T ss_dssp HHTTSSCE-ECSCCSSBCCEEEESH------HHHHHHHHHHHHTTEE
T ss_pred HHHHCCCC-CCCCCCCEEEEEECCH------HHHHHHHHHHHHCCCE
T ss_conf 88755986-5799988799997999------9999999999978914
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.96 E-value=5.7e-28 Score=192.25 Aligned_cols=314 Identities=12% Similarity=0.006 Sum_probs=217.5
Q ss_pred EEEEECCCEEE----EEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC----CCCCCCHHHHHHH
Q ss_conf 99910586038----983766754451220356522357899899799999999887315558----9999996799999
Q 003472 378 VIDSRCGENFS----VYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECA 449 (817)
Q Consensus 378 ~i~~~~G~~~~----i~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~~~----~~~~~~~~~~eLa 449 (817)
.+++..|.+.. ..+..++ ++++|+| |++||.+.||+|++|+.+++++++... ..++.++.+.+|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~----~~~~FsS---ndYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE 96 (396)
T d2bwna1 24 DIEREKGAFPKAQWNRPDGGKQ----DITVWCG---NDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLE 96 (396)
T ss_dssp EEEECTTSTTEEEEECTTSCEE----EEEECSC---SCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHH
T ss_pred CCCCCCCCCCCCEEEECCCCCE----EEEEEEC---CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 0122467887404740279982----8999885---21027689999999999999995898645524458744999999
Q ss_pred HHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99983119998661999078678999999999998530244100024877645555208999818744786421112489
Q 003472 450 ELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP 529 (817)
Q Consensus 450 e~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~ 529 (817)
++|+++++. +.+.+++||+.||.+++.... . .++..+|..+...|.+...++.+++.
T Consensus 97 ~~lA~~~g~---e~all~~sG~~An~~~i~~l~-~-------------------~~~~d~i~~D~~~Hasi~~g~~ls~a 153 (396)
T d2bwna1 97 AEIAGLHQK---EAALVFSSAYNANDATLSTLR-V-------------------LFPGLIIYSDSLNHASMIEGIKRNAG 153 (396)
T ss_dssp HHHHHHTTC---SEEEEESCHHHHHHHHHHHHH-H-------------------HSTTCEEEEETTCCHHHHHHHHHSCC
T ss_pred HHHHHHHCC---CCEEEEECCHHHHHHHHHHHH-C-------------------CCCCCCEEEHHHHHHCCCHHHHCCCC
T ss_conf 999997499---851554011377888999876-0-------------------36798431053422300014304666
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 98877677887568765558984222476212148711110002344444567301221026911689999999999974
Q 003472 530 SPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLL 609 (817)
Q Consensus 530 ~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~ 609 (817)
...+. .|||+ +.+++.++
T Consensus 154 ~~~~f--------------------------------------------~Hnd~------------------~~l~~l~~ 171 (396)
T d2bwna1 154 PKRIF--------------------------------------------RHNDV------------------AHLRELIA 171 (396)
T ss_dssp CEEEE--------------------------------------------CTTCH------------------HHHHHHHH
T ss_pred CCEEE--------------------------------------------ECCHH------------------HHHHHHHH
T ss_conf 73376--------------------------------------------32368------------------77666776
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC--CCHHHHCCCC--CCEE
Q ss_conf 19998888807999994533468973128988999999997623993998511006565563--1023000899--9622
Q 003472 610 QNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCV--PDIA 685 (817)
Q Consensus 610 ~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~--~~a~e~~gv~--PDIi 685 (817)
. ..+..-..|++|.| .++.|.+.| ++++.++|++||+.|++||+| |||-.|+ .+..+++|+. .||+
T Consensus 172 ~----~~~~~~~~iv~egv-ySmdGd~ap----l~~l~~L~~~y~~~L~vDeAH-s~Gv~G~~G~G~~~~~~~~~~~di~ 241 (396)
T d2bwna1 172 A----DDPAAPKLIAFESV-YSMDGDFGP----IKEICDIAEEFGALTYIDEVH-AVGMYGPRGAGVAERDGLMHRIDIF 241 (396)
T ss_dssp H----SCTTSCEEEEEESB-CTTTCCBCC----HHHHHHHHHHHTCEEEEECTT-TTTTSSTTSCCHHHHHTCGGGCSEE
T ss_pred H----HCCCCCEEEEEEEE-CCCCCCCCC----CHHHHHHHHHHCCEEEECCCE-EEEEECCCCCCCHHHCCCCEEEEEE
T ss_conf 4----05667616999752-367644466----176899865424066501210-1102216666622331873121245
Q ss_pred --ECCCCCCC-CCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCC---CHHCHHHHHHHH
Q ss_conf --00433478-887511898225777411288865300001589987899999999999951967---012089999999
Q 003472 686 --CYGKLLTG-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ---TNHNIIPERRIL 759 (817)
Q Consensus 686 --tlgK~Lgg-Gy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~---~~~~l~~~~~~l 759 (817)
+|||++|+ | |.+++++++.+.+...++ .+.+|.+..|..+++++++++++..++ ....+..+.+.+
T Consensus 242 ~gTlsKa~g~~G----g~v~~~~~~i~~l~~~~~----~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~ 313 (396)
T d2bwna1 242 NGTLAKAYGVFG----GYIAASARMVDAVRSYAP----GFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVL 313 (396)
T ss_dssp EEESSSTTCSCC----EEEEECHHHHHHHHHHCH----HHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCCC----CCCCHHHHHHHHHHHHCC----HHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 312465553355----435326899999875121----345313675777889999999763120789999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHH-HCCCC
Q ss_conf 9999999999987399924197551699999710797777112999999999-82989
Q 003472 760 RELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 760 ~~~l~~~l~~~~~~~p~I~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~G~~ 816 (817)
.. .+.+. .++.... ..-+..|.+.++ +.+..+...+| ++|++
T Consensus 314 ~~----~l~~~--g~~~~~~---~spIvpv~ig~~------~~~~~~a~~lL~e~Gi~ 356 (396)
T d2bwna1 314 KM----RLKAL--GMPIIDH---GSHIVPVVIGDP------VHTKAVSDMLLSDYGVY 356 (396)
T ss_dssp HH----HHHHH--TCCBCCC---SSSCEEEECCCH------HHHHHHHHHHHHHHCEE
T ss_pred HH----HHHHC--CCCCCCC---CCCEEEEEECCH------HHHHHHHHHHHHHCCEE
T ss_conf 98----89866--9986899---999799996999------99999999999968989
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.93 E-value=7.3e-26 Score=178.89 Aligned_cols=331 Identities=11% Similarity=-0.026 Sum_probs=187.7
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHH
Q ss_conf 66754451220356522357899899799999999887315558999999679999999983119998661999078678
Q 003472 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGST 472 (817)
Q Consensus 393 dG~~~~~~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGse 472 (817)
.++ .+||+.+.+++..+++. +. ++ +.. +...+ ..++...+|+++++++++ .++++|++||++
T Consensus 40 ~~~----~~id~~sd~~t~~~~~~-~~---a~----~~~-gd~~y--~~~~~~~~le~~~a~l~g---~~~~~~~~sGt~ 101 (465)
T d1ax4a_ 40 SSA----VYIDLLTDSGTNAMSDH-QW---AA----MIT-GDEAY--AGSRNYYDLKDKAKELFN---YDYIIPAHQGRG 101 (465)
T ss_dssp GGG----CSEECSCSSSCCCEEHH-HH---HH----HHT-CCCCS--SSCHHHHHHHHHHHHHHC---CCEEEEESSHHH
T ss_pred CCC----EEEECCCCCCHHHHHHH-HH---HH----HHH-HHHHH--CCCHHHHHHHHHHHHHHC---CCEEEECCCCHH
T ss_conf 667----54532256660543488-99---98----754-66564--568279999999999979---987998999689
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999853024410002487764555520899981874478642111248998877677887568765558984
Q 003472 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (817)
Q Consensus 473 AvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~ 552 (817)
||++|+|++ +.+..+.+. . +..+| ...+|+.+..+............ ..... .
T Consensus 102 A~~~a~~~~-~~~g~~~~~------------~-~~~~i--~~~~h~~t~~~~~~~~g~~~~~~-----~~~~~--~---- 154 (465)
T d1ax4a_ 102 AENILFPVL-LKYKQKEGK------------A-KNPVF--ISNFHFDTTAAHVELNGCKAINI-----VTEKA--F---- 154 (465)
T ss_dssp HHHHHHHHH-HHHHHHTTC------------C-SSCEE--EESSCCHHHHHHHHHTTCEEEEC-----BCGGG--G----
T ss_pred HHHHHHHHH-HHHHHHCCC------------C-CCEEE--ECCCHHHHHHHHHHHCCCEEECC-----CCCCC--C----
T ss_conf 999999999-988986399------------9-87089--44530341589998769815215-----55556--7----
Q ss_pred CCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 22247621214871111000234444456730122102691168999999999997419998888807999994533468
Q 003472 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (817)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~ 632 (817)
....+..... ..| .+.+++.+++ ..++.++++++|++ +++
T Consensus 155 --------~~~~~~~~~~---------~~d------------------~~~l~~~i~~----~~~~~~~~~~~~~~-~~~ 194 (465)
T d1ax4a_ 155 --------DSETYDDWKG---------DFD------------------IKKLKENIAQ----HGADNIVAIVSTVT-CNS 194 (465)
T ss_dssp --------CTTSCCTTTT---------CBC------------------HHHHHHHHHH----HCGGGEEEEEEESS-BTT
T ss_pred --------CCCCCCCCCC---------CCC------------------HHHHHHHHHH----HCCCCCCCEEECCC-CCC
T ss_conf --------8877797667---------659------------------9999999875----20444321121134-444
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEE------CCCCCCCCCHHHHCCCCC------CEEECCCCCCCCCCCCEE
Q ss_conf 97312898899999999762399399851100------656556310230008999------622004334788875118
Q 003472 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFT------GFWRLGVETTADLLGCVP------DIACYGKLLTGGVIPLAA 700 (817)
Q Consensus 633 gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~T------GfGRtG~~~a~e~~gv~P------DIitlgK~LggGy~Plsa 700 (817)
+|..+++.+++++++++|++||++||+||+++ +++|++.+++.+..++.| |+++++|..+++ .|.++
T Consensus 195 ~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~-~~~~g 273 (465)
T d1ax4a_ 195 AGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPL-LNIGG 273 (465)
T ss_dssp TTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTC-CSSCE
T ss_pred CCEECCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEECCCCCC-CCCCE
T ss_conf 75315899999999999998599899978363421000224665434565302113102454504761356766-56521
Q ss_pred EEECHHHHHHHCCC-CCCCEEECCCCCCCCHHHHHHHHHHH-HHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 98225777411288-86530000158998789999999999-99519670120899999999999999999987399924
Q 003472 701 TLATNAVFDSFVGD-SKLKALLHGHSYSAHALGCAAAAKSI-KWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ 778 (817)
Q Consensus 701 vl~~~~i~e~~~~~-~~~~~~~h~~T~~gnPla~Aaala~L-~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~ 778 (817)
++...+..+.+... .......+..++++....+.++.+.. .....++..++..+++ .+|.+.|.+. ..+.+.
T Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~----~~l~~~L~~~--g~~~v~ 347 (465)
T d1ax4a_ 274 LVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQV----KYLGDRLREA--GIPIQY 347 (465)
T ss_dssp EEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HHHHHHHHHT--TCCBCS
T ss_pred EEEECCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH--CCCCCC
T ss_conf 5751505778876303355544578761066787877765568751399999999999----9999999860--576114
Q ss_pred EEEEEEEEEEEEEECCCCCCC-CCHHHHHHHHHHHCCC
Q ss_conf 197551699999710797777-1129999999998298
Q 003472 779 RVVALGTLCAIELQAAGCNAG-YCLIELFLYNFLTTGM 815 (817)
Q Consensus 779 ~VrG~Glm~gIel~~~~~~~~-~~~~~~~~~~~l~~G~ 815 (817)
++++.+.+..++......... +.........+.+.|+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI 385 (465)
T d1ax4a_ 348 PTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGV 385 (465)
T ss_dssp SCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCE
T ss_pred CCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 78763365211330578764221067899999986495
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=9e-24 Score=165.61 Aligned_cols=206 Identities=23% Similarity=0.293 Sum_probs=162.7
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCC------CCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 893799808999818999999999951399978998534883002599999------81799997577874345898631
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHD------SDSRFLFTKLPSLSLRRNFPSSL 110 (817)
Q Consensus 37 ~~~~~i~~t~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~------~d~~~~~~~~~~~~~~~~~~~~~ 110 (817)
.|.|||+||+||||||++|++|+++|. ++|+||.++||+.+|.... .+...+.... +.
T Consensus 1 ~~~~~i~gt~~GVGKTtvs~~La~aLa-----~~G~rVl~id~d~~g~~~~~~~~~~~~~~~~~~~~-~~---------- 64 (224)
T d1byia_ 1 SKRYFVTGTDTEVGKTVASCALLQAAK-----AAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNS-SL---------- 64 (224)
T ss_dssp CEEEEEEESSTTSCHHHHHHHHHHHHH-----HTTCCEEEECSEEESCBCCTTSCBCHHHHHHHHTC-SS----------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-----HCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH-CC----------
T ss_conf 951999989999429999999999999-----77993999886204997788886415899998863-26----------
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCC
Q ss_conf 01110001137886420247999988756672100100000123567777754433000006424665968898472499
Q 003472 111 ILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGG 190 (817)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~ 190 (817)
+. ......+..+.....+......+ ..
T Consensus 65 ---------------------~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~-~~ 91 (224)
T d1byia_ 65 ---------------------QL-------------------------------DYATVNPYTFAEPTSPHIISAQE-GR 91 (224)
T ss_dssp ---------------------CC-------------------------------CHHHHCSEEESSCSCHHHHHHHH-TC
T ss_pred ---------------------CC-------------------------------CCCCCCCCCCCCCHHHHHHHHHH-HH
T ss_conf ---------------------74-------------------------------20001321124301344455665-44
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 99958999999999851576531101257777899958998778789997034675317999999975998829999999
Q 003472 191 VVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISA 270 (817)
Q Consensus 191 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~~iiEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~ 270 (817)
......+.+.+...... +|++++|+..++..+......+.++++....++++|++...+...++..+
T Consensus 92 ~~~~~~~~~~~~~~~~~-------------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~~~~~~~~~~~~~~ 158 (224)
T d1byia_ 92 PIESLVMSAGLRALEQQ-------------ADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLT 158 (224)
T ss_dssp CCCHHHHHHHHHHHHTT-------------CSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC-------------CCEEEECCCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEECCCHHHHHHHH
T ss_conf 30389999998632310-------------34675125543223433420000022343430269985303123899999
Q ss_pred HHHHHHCCCCEEEEEECCCCCC--C----HHHHHHHHCCCCCEEE-CCCCCCCCCC-HHHHHHC
Q ss_conf 9999957992899999158999--9----7989985308996986-5999999951-0123210
Q 003472 271 YESLKLRGYDVVAVVFEDHGLV--N----EVPLMSYLRNRVPVLV-LPPLPQDSSN-DLMEWFD 326 (817)
Q Consensus 271 ~~~l~~~~~~v~gvi~N~~~~~--~----~~~l~~~~~~~~pvlg-ip~~~~~~~~-~~~~~l~ 326 (817)
.+.++..+..+.|+|+|++... . .+.+++.+ ++|+|| ||++++.... +..++++
T Consensus 159 ~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~~~l~~~~--gi~vlG~IP~~~~~~e~~~~~~~l~ 220 (224)
T d1byia_ 159 AQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMI--PAPLLGEIPWLAENPENAATGKYIN 220 (224)
T ss_dssp HHHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHHS--SSCEEEEECCCTTCTTCCCCGGGCC
T ss_pred HHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH--CCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf 8877504885179999676887058999999999972--9988998789987866645366569
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=3.3e-22 Score=155.71 Aligned_cols=303 Identities=12% Similarity=0.029 Sum_probs=178.1
Q ss_pred CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHH
Q ss_conf 12203565223578998997999999998873155589999996799999999831199986619990786789999999
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALK 479 (817)
.+||+.+.+++....++ +...+. .+...+ ..++...+|+++++++++ .+.++|++||++||+.|++
T Consensus 42 ~~idl~sd~~t~~~~~~--------~~a~~~-~gd~~Y--~~~~~~~~le~~~a~l~G---~~~~~~~~sGt~A~~~a~~ 107 (467)
T d2v1pa1 42 VFIDLLTDSGTGAVTQS--------MQAAMM-RGDEAF--SGSRSYYALAESVKNIFG---YQYTIPTHQGRGAEQIYIP 107 (467)
T ss_dssp CSEECSCCTTCSCCCHH--------HHHHTT-SCCCCS--SSCHHHHHHHHHHHHHTC---CSEEEEECSSTTTHHHHHH
T ss_pred EEEECCCCCCCHHHHHH--------HHHHCC-CCCHHH--CCCCHHHHHHHHHHHHHC---CCEEEECCCCHHHHHHHHH
T ss_conf 03541033350666899--------996325-653231--479429999999999979---9879989998899999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998530244100024877645555208999818744786421112489988776778875687655589842224762
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~ 559 (817)
++. .+...... ..+..++...+.||+.|.++...++.....-. ...+. .++
T Consensus 108 ~~~-~~g~~~~~------------~~~~~~i~~~~~~~~~~~~~~~~~G~~~~~~~------~~~~~--~~~-------- 158 (467)
T d2v1pa1 108 VLI-KKREQEKG------------LDRSKMVAFSNYFFDTTQGHSQINGCTVRNVY------IKEAF--DTG-------- 158 (467)
T ss_dssp HHH-HHHHHHHC------------CCTTTCEEEESSCCHHHHHHHHHTTCEEEECB------CTTTT--CTT--------
T ss_pred HHH-HCCCEEEC------------CCCCCEEEEECCCCCCCHHHHHHCCCEEEECC------CCCCC--CCC--------
T ss_conf 986-40225966------------78883899716666541899997399513236------54555--665--------
Q ss_pred EEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 12148711110002344444567301221026911689999999999974199988888079999945334689731289
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~ 639 (817)
.+..+ ....| .+.+++.+.. .++..++++++|++ ++++|..+++
T Consensus 159 ----~~~~~---------~~~~d------------------~~~l~~~i~~----~~~~~~~~i~~e~~-~~~~gg~~~~ 202 (467)
T d2v1pa1 159 ----VRYDF---------KGNFD------------------LEGLERGIEE----VGPNNVPYIVATIT-SNSAGGQPVS 202 (467)
T ss_dssp ----SCCTT---------TTCBC------------------HHHHHHHHHH----HCGGGCCCEEEESS-BCGGGCBCCC
T ss_pred ----CCCCC---------CCCCC------------------HHHHHHHHHH----CCCCCCCEEEECCE-EECCCCCCCC
T ss_conf ----54544---------56779------------------9999999765----48632120243031-4036443589
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEEEC---CCCCCCCCHHHHCC---------CCCCEEECCCCCCCCCCCCEEEEECHH-
Q ss_conf 88999999997623993998511006---56556310230008---------999622004334788875118982257-
Q 003472 640 PLFQRILVKECQNRKIPVIFDEVFTG---FWRLGVETTADLLG---------CVPDIACYGKLLTGGVIPLAATLATNA- 706 (817)
Q Consensus 640 ~~fl~~Lr~lc~~~gilLI~DEV~TG---fGRtG~~~a~e~~g---------v~PDIitlgK~LggGy~Plsavl~~~~- 706 (817)
.+++++++++|++||++||+||+++. .++.+..+.+...+ -..|++++++.-+.+ .|.++++++.+
T Consensus 203 ~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~-~~~gg~i~~~~~ 281 (467)
T d2v1pa1 203 LANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAM-VPMGGLLCMKDD 281 (467)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTC-CSSCEEEEECSG
T ss_pred HHHHHHHHHHHHHCCCEEEEECHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCCC-CCCCEEEEECCH
T ss_conf 9999999999998198899855004313021455554426776032301013558879955777777-887526773615
Q ss_pred -HHHHHCCCC-CCCEEECCCCCCCCHHHHHHHHHH-HHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf -774112888-653000015899878999999999-99951967012089999999999999999998739992419755
Q 003472 707 -VFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKS-IKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL 783 (817)
Q Consensus 707 -i~e~~~~~~-~~~~~~h~~T~~gnPla~Aaala~-L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~ 783 (817)
++....... ......+..++++.+.+++++.+. +.....++..++..++++++.+ +|.+ ....+..+++.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~----~L~~---~~~~v~~~~~~ 354 (467)
T d2v1pa1 282 SFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVD----GLEE---IGVVCQQAGGH 354 (467)
T ss_dssp GGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----HHHH---TTCCEEEECSS
T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---CCCCCCCCCCC
T ss_conf 6656777631046455557301246788999999984875517899999999999999----9985---28734577765
Q ss_pred EEEEEE
Q ss_conf 169999
Q 003472 784 GTLCAI 789 (817)
Q Consensus 784 Glm~gI 789 (817)
+.....
T Consensus 355 ~~~~~~ 360 (467)
T d2v1pa1 355 AAFVDA 360 (467)
T ss_dssp CEEEEH
T ss_pred CEEECC
T ss_conf 401111
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.77 E-value=4.9e-17 Score=122.86 Aligned_cols=305 Identities=8% Similarity=-0.031 Sum_probs=165.8
Q ss_pred CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHH
Q ss_conf 12203565223578998997999999998873155589999996799999999831199986619990786789999999
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALK 479 (817)
.++||.| .|.++. ||+|++|+.++... +.. .-...+...++.++++++++.+ ..++|++||++||+.|++
T Consensus 3 ~~~~f~s----~n~~g~-~P~v~~A~~~a~~~--~~~-~~~~~~~~~~l~~~la~~~g~~--~~v~f~~sGt~An~~a~~ 72 (345)
T d1v72a1 3 PALGFSS----DNIAGA-SPEVAQALVKHSSG--QAG-PYGTDELTAQVKRKFCEIFERD--VEVFLVPTGTAANALCLS 72 (345)
T ss_dssp CCCBCSC----GGGCCC-CHHHHHHHHHTTSS--CCC-STTCSHHHHHHHHHHHHHHTSC--CEEEEESCHHHHHHHHHH
T ss_pred CCCCCCC----CCCCCC-CHHHHHHHHHHHCC--CCC-CCCCCHHHHHHHHHHHHHHCCC--CEEEECCCHHHHHHHHHH
T ss_conf 8757677----888788-99999999998632--766-6587999999999999977999--579988965999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998530244100024877645555208999818744786421112489988776778875687655589842224762
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~ 559 (817)
.+ +...+ +..++.....+|.........++.. +
T Consensus 73 ~~-~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------------------- 105 (345)
T d1v72a1 73 AM-TPPWG------------------NIYCHPASHINNDECGAPEFFSNGA-K--------------------------- 105 (345)
T ss_dssp TS-CCTTE------------------EEEECTTSHHHHSSTTHHHHHTTSC-E---------------------------
T ss_pred HH-HHCCC------------------CCCCCCCCCEEEECHHHHHHHCCCC-C---------------------------
T ss_conf 99-86377------------------5334555311330013577743852-1---------------------------
Q ss_pred EEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 12148711110002344444567301221026911689999999999974199988888079999945334689731289
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~ 639 (817)
..+...... ..+ .+.+++.+.... .......+++++++ +...+....+
T Consensus 106 ~~~~~~~~~-----------~~~------------------~~~l~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~ 153 (345)
T d1v72a1 106 LMTVDGPAA-----------KLD------------------IVRLRERTREKV--GDVHTTQPACVSIT-QATEVGSIYT 153 (345)
T ss_dssp EEECCCGGG-----------CCC------------------HHHHHHHTTSST--TCTTSCEEEEEEEE-SSCTTSCCCC
T ss_pred CCCCCCCCC-----------CCC------------------HHHHHHHHCCCC--CCCCCCCCEEEEEE-CCCCCCCCCC
T ss_conf 023456565-----------556------------------777542210012--12355542255420-1112222222
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCCC--CCCEEECCCCCCCCCCCCEEEEECHHHHHHHCCCCCC
Q ss_conf 88999999997623993998511006565563102300089--9962200433478887511898225777411288865
Q 003472 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC--VPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKL 717 (817)
Q Consensus 640 ~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv--~PDIitlgK~LggGy~Plsavl~~~~i~e~~~~~~~~ 717 (817)
...++++.++|++||+++++||+|+++++++..+....... .++.++++|..+++ ...+...............
T Consensus 154 ~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--- 229 (345)
T d1v72a1 154 LDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGV-LAAEAIVLFNTSLATEMSY--- 229 (345)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTC-SSCEEEEESSGGGHHHHHH---
T ss_pred CHHHHHHHHHHHHCCCEEEECCCCCCEECCCCCCCHHHHHCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHCCC---
T ss_conf 001246788988618625621222110104556687885234554310467554564-2345543211333321001---
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-EEEEEEEECCCC
Q ss_conf 3000015899878999999999999519670120899999999999999999987399924197551-699999710797
Q 003472 718 KALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG-TLCAIELQAAGC 796 (817)
Q Consensus 718 ~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~G-lm~gIel~~~~~ 796 (817)
.........+...+++.+.+..+.+.. ....... ...+...+.+.+.+.+.+.-....+ -+..+.+.
T Consensus 230 ---~~~~~~~~~~~~~~aa~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~~---- 297 (345)
T d1v72a1 230 ---RRKRAGHLSSKMRFLSAQIDAYLTDDL-WLRNARK----ANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD---- 297 (345)
T ss_dssp ---HHHHTTCCCSSTHHHHHHHHHHTSTTH-HHHHHHH----HHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC----
T ss_pred ---CCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHCCC----HHHHHHHHHHHHHHCCCCEECCCCCCCEEEEECC----
T ss_conf ---134555654204677666677888765-4320100----2358999999998669947315897528999739----
Q ss_pred CCCCCHHHHHHHHHHHCCCC
Q ss_conf 77711299999999982989
Q 003472 797 NAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 797 ~~~~~~~~~~~~~~l~~G~~ 816 (817)
......++++|+.
T Consensus 298 -------~~~~~~L~~~gi~ 310 (345)
T d1v72a1 298 -------SAMIDALLKAGFG 310 (345)
T ss_dssp -------HHHHHHHHHTTCB
T ss_pred -------HHHHHHHHHCCCC
T ss_conf -------9999999976998
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.74 E-value=2.9e-16 Score=118.00 Aligned_cols=304 Identities=12% Similarity=-0.002 Sum_probs=168.1
Q ss_pred EECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 20356522357899899799999999887315558999999679999999983119998661999078678999999999
Q 003472 402 FDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 481 (817)
Q Consensus 402 lD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA 481 (817)
+||.+-..+.. +|++.+|+.++.. +.... +..+...+|+++|+++++. ++++|++||++||+.||+.+
T Consensus 2 ~~~~~~~~t~p-----~p~v~~A~~~a~~--g~~~y--g~~p~~~~le~~lA~~~G~---~~~~~~~sGt~A~~~al~a~ 69 (343)
T d1m6sa_ 2 IDLRSDTVTKP-----TEEMRKAMAQAEV--GDDVY--GEDPTINELERLAAETFGK---EAALFVPSGTMGNQVSIMAH 69 (343)
T ss_dssp EECSCGGGCCC-----CHHHHHHHHTCCC--CCGGG--TCCHHHHHHHHHHHHHTTC---SEEEEESCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCC-----CHHHHHHHHHHHC--CCCCC--CCCHHHHHHHHHHHHHHCC---CEEEEECCHHHHHHHHHHHH
T ss_conf 14664509999-----9999999985153--78523--8987999999999998789---82999678899999999998
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 9985302441000248776455552089998187447864211124-899887767788756876555898422247621
Q 003472 482 FRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ-APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKW 560 (817)
Q Consensus 482 ~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt-~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~ 560 (817)
. . .| ..++.....++..+....... ....+ .
T Consensus 70 ~-~----~g----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~ 101 (343)
T d1m6sa_ 70 T-Q----RG----------------DEVILEADSHIFWYEVGAMAVLSGVMP---------------------------H 101 (343)
T ss_dssp C-C----TT----------------CEEEEETTCHHHHSSTTHHHHHTCCEE---------------------------E
T ss_pred H-C----CC----------------CCEECCCCCCCEEEECCCCCCCCCCEE---------------------------E
T ss_conf 6-0----69----------------842205654303431000001255245---------------------------2
Q ss_pred EECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCH
Q ss_conf 21487111100023444445673012210269116899999999999741999888880799999453346897312898
Q 003472 561 ILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDP 640 (817)
Q Consensus 561 ~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~ 640 (817)
.++.+.. ..+ .+.++..+.... .....+..+++++. ....|...++.
T Consensus 102 ~~~~~~~------------~~~------------------~~~~~~~i~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~ 148 (343)
T d1m6sa_ 102 PVPGKNG------------AMD------------------PDDVRKAIRPRN--IHFPRTSLIAIENT-HNRSGGRVVPL 148 (343)
T ss_dssp EECEETT------------EEC------------------HHHHHHHSCCSC--TTSCCEEEEEEESS-BTTTTSBCCCH
T ss_pred CCCCCCC------------CCC------------------HHHHHHHHHHHH--CCCCCCCCCCCCCC-CCCCCCEECCH
T ss_conf 4553347------------558------------------788777653220--12565443101221-01478401478
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCEEEEECHHHHHHHCCCCCCCEE
Q ss_conf 89999999976239939985110065655631023000899962200433478887511898225777411288865300
Q 003472 641 LFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKAL 720 (817)
Q Consensus 641 ~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDIitlgK~LggGy~Plsavl~~~~i~e~~~~~~~~~~~ 720 (817)
+.+++++++|+++|++++.||+++++...+..+.........+..+++|..+.|....+.++...+......... .
T Consensus 149 ~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~ 224 (343)
T d1m6sa_ 149 ENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKAR----K 224 (343)
T ss_dssp HHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC----C
T ss_conf 999999998886292998425533321344332212312332111112223466431012213098986667507----6
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCCC
Q ss_conf 00158998789999999999995196701208999999999999999999873999241975516999997107977771
Q 003472 721 LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY 800 (817)
Q Consensus 721 ~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~Glm~gIel~~~~~~~~~ 800 (817)
..+.+.......+++.. ..............++...+.+ .+..+ ........+. .-+.-+++...+
T Consensus 225 ~~~~~~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~--~~~v~~~~~~~~----- 290 (343)
T d1m6sa_ 225 MLGGGMRQAGVLAAAGI--IALTKMVDRLKEDHENARFLAL----KLKEI-GYSVNPEDVK--TNMVILRTDNLK----- 290 (343)
T ss_dssp HHTCCCSSTHHHHHHHH--HHHHHSSTTHHHHHHHHHHHHH----HHHHH-TCBCCGGGCC--SSEEEEECTTSS-----
T ss_pred CCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH----HHHHH-CCCCCCCCCC--CEEEEEEECCCC-----
T ss_conf 54346511688887650--0255667789999988777666----79873-5676678987--548999807875-----
Q ss_pred CHHHHHHHHHHHCCCC
Q ss_conf 1299999999982989
Q 003472 801 CLIELFLYNFLTTGMH 816 (817)
Q Consensus 801 ~~~~~~~~~~l~~G~~ 816 (817)
.....+...++++||+
T Consensus 291 ~~a~~l~~~L~~~Gi~ 306 (343)
T d1m6sa_ 291 VNAHGFIEALRNSGVL 306 (343)
T ss_dssp SCHHHHHHHHHHHTEE
T ss_pred CCHHHHHHHHHHCCCE
T ss_conf 4399999999978988
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.52 E-value=2e-12 Score=93.58 Aligned_cols=205 Identities=11% Similarity=0.073 Sum_probs=123.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCC-----CCC-C-HHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 9989979999999988731555899-----999-9-67999999998311999866199907867899999999999853
Q 003472 414 DATLQIELARDMGYTAARFGHVMFP-----ENV-Y-EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486 (817)
Q Consensus 414 Gh~~~p~I~~Ai~~q~~~~~~~~~~-----~~~-~-~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t 486 (817)
|.- .|+..+|+.+..+.+....+. ... + +.+..+.++++++++ .+.+.++++|++|+..|+...
T Consensus 12 ~~l-~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g---~e~~~~t~g~t~a~~~~~~al----- 82 (364)
T d2e7ja1 12 GKL-TEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLG---CDVARVTNGAREAKFAVMHSL----- 82 (364)
T ss_dssp CCC-CHHHHHHHHHC--------------------CCHHHHHHTHHHHHTT---SSEEEEESSHHHHHHHHHHHH-----
T ss_pred CCC-CHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHHHH-----
T ss_conf 968-99999999998447751003466641113570899999999999869---597999796999999999998-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 02441000248776455552089998187447864211124899887767788756876555898422247621214871
Q 003472 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566 (817)
Q Consensus 487 ~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~ 566 (817)
...| ..||.-+.+|+. ...++...+... ..+|..+
T Consensus 83 ~~~g----------------d~Vi~~~~~h~s-~~~~~~~~g~~v----------------------------~~v~~~~ 117 (364)
T d2e7ja1 83 AKKD----------------AWVVMDENCHYS-SYVAAERAGLNI----------------------------ALVPKTD 117 (364)
T ss_dssp CCTT----------------CEEEEETTCCHH-HHHHHHHTTCEE----------------------------EEECCCC
T ss_pred HCCC----------------CEEEEECCCCCC-CCHHHHHCCCEE----------------------------EEEEECC
T ss_conf 6799----------------679740464311-106888512117----------------------------9863035
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf 11100023444445673012210269116899999999999741999888880799999453346897312898899999
Q 003472 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646 (817)
Q Consensus 567 ~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~L 646 (817)
. ++ + .-+ .+.+++.+++. .....+..|+++-+ .+..|.+.+ ++++
T Consensus 118 ~-------------~~----~--~i~--------~~~l~~~i~~~---~k~~~~~lv~i~~~-~n~tG~~~~----l~~I 162 (364)
T d2e7ja1 118 Y-------------PD----Y--AIT--------PENFAQTIEET---KKRGEVVLALITYP-DGNYGNLPD----VKKI 162 (364)
T ss_dssp T-------------TT----C--CCC--------HHHHHHHHHHH---TTTSCEEEEEEESS-CTTTCCCCC----HHHH
T ss_pred C-------------CC----C--CCC--------HHHHHHHHHHH---CCCCCCEEEEEECC-CCCCCEEEC----CHHH
T ss_conf 6-------------43----3--257--------99997665541---04677169996057-799845523----1100
Q ss_pred HHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCEEECC--CCCCCCCCCCEEEEECHHHHHHHCC
Q ss_conf 999762399399851100656556310230008999622004--3347888751189822577741128
Q 003472 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVG 713 (817)
Q Consensus 647 r~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDIitlg--K~LggGy~Plsavl~~~~i~e~~~~ 713 (817)
.++|++||+++|+||+| ++|..+. ....+ ..|+++++ |.+++. -.+|.+.+++++.+.+..
T Consensus 163 ~~ia~~~~i~livD~a~-~~g~~~~--~~~~~--g~D~~~~S~~K~~~~~-g~~g~l~~~~~~~~~~~~ 225 (364)
T d2e7ja1 163 AKVCSEYDVPLLVNGAY-AIGRMPV--SLKEI--GADFIVGSGHKSMAAS-GPIGVMGMKEEWAEIVLR 225 (364)
T ss_dssp HHHHHTTTCCEEEECTT-TBTTBCC--CHHHH--TCSEEEEEHHHHSSCC-SSCEEEEECTTTTTTTTC
T ss_pred EECCCCCCCHHHCCCCC-HHHHHHH--CCCCC--CCCEEEECCCCCCCCC-CCEEEEEECHHHHHHHHH
T ss_conf 00002332111114432-3444320--13333--2213530331012788-888999988799999985
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.40 E-value=1.8e-11 Score=87.57 Aligned_cols=269 Identities=12% Similarity=-0.005 Sum_probs=133.0
Q ss_pred CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHH
Q ss_conf 12203565223578998997999999998873155589999996799999999831199986619990786789999999
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALK 479 (817)
.+||+.|-.++. . ..+++..++.. +.-.+ .-.+...+|+++++++++. +.+.|++||+.||..|++
T Consensus 43 v~iDl~sDs~t~----a----m~~~~~aa~~~-GDd~Y--~~dpt~~~lE~~~a~l~G~---e~al~~~SGt~An~~a~~ 108 (456)
T d1c7ga_ 43 IYIDLLTDSGTN----A----MSDKQWAGMMI-GDEAY--AGSENFYHLEKTVKELFGF---KHIVPTHQGRGAENLLSQ 108 (456)
T ss_dssp CSEECSCSSSCC----C----EEHHHHHHTTS-CCCCS--SSCHHHHHHHHHHHHHHCC---SEEEEESSHHHHHHHHHH
T ss_pred EEEECCCCCCCC----C----CHHHHHHHHHC-CCHHC--CCCCHHHHHHHHHHHHHCC---CEEEECCCHHHHHHHHHH
T ss_conf 046753478965----2----64999998754-65011--6892699999999999699---849988987999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998530244100024877645555208999818744786421112489988776778875687655589842224762
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~ 559 (817)
.. .+.| +.|.....|+... +.....+.....- ....+ .+
T Consensus 109 ~l-----~~~G-----------------d~Vi~~~~f~~~~-~~i~~~g~~~~~~------~~~~~--~~---------- 147 (456)
T d1c7ga_ 109 LA-----IKPG-----------------QYVAGNMYFTTTR-FHQEKNGATFVDI------VRDEA--HD---------- 147 (456)
T ss_dssp HH-----CCTT-----------------EEEEESSCCHHHH-HHHHHTTEEEEEC------BCGGG--GC----------
T ss_pred HH-----CCCC-----------------CEEECCCCHHHHH-HHHHHCCCEEEEC------CCCCC--CC----------
T ss_conf 83-----2789-----------------7671576628879-9999739543432------34434--52----------
Q ss_pred EEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 12148711110002344444567301221026911689999999999974199988888079999945334689731289
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~ 639 (817)
...+..++ .++ | .+.+++.+++ ...+.++.+++|.. ...+|-.+.+
T Consensus 148 --~~~~~~~~-----------~~~--------d--------~~~le~~I~~----~~~~~~~~i~~e~~-~n~~gG~~~~ 193 (456)
T d1c7ga_ 148 --ASLNLPFK-----------GDI--------D--------LNKLATLIKE----KGAENIAYICLAVT-VNLAGGQPVS 193 (456)
T ss_dssp --TTCCCSCT-----------TCB--------C--------HHHHHHHHHH----HCGGGEEEEEEESS-BTTTTSBCCC
T ss_pred --CCCCCCCC-----------CCC--------C--------HHHHHHHHHH----CCCCCCEEEEEEEC-CCCCCCCEEC
T ss_conf --00357755-----------668--------9--------9999998543----17764215874000-3445422002
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC-HHHHCC-----------CCCCEEEC--CCCCCCCCCCCEEEEE-C
Q ss_conf 8899999999762399399851100656556310-230008-----------99962200--4334788875118982-2
Q 003472 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLG-----------CVPDIACY--GKLLTGGVIPLAATLA-T 704 (817)
Q Consensus 640 ~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~-a~e~~g-----------v~PDIitl--gK~LggGy~Plsavl~-~ 704 (817)
..++++++++|++||++++.|+++..-....... ...+.+ -..|++++ +|.++ .|.+.+++ +
T Consensus 194 ~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~---~~~GG~i~~~ 270 (456)
T d1c7ga_ 194 MANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCL---VNIGGFLCMN 270 (456)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC---CSSCEEEEES
T ss_pred HHHHHHHHHHHHHCCCEEEEECCHHHCCHHHHCCCCCCCCCCCHHHHCCCCCCCCCCEEEECCCCCC---CCCEEEEECC
T ss_conf 9889999999998699799975324325445303555658987666224433566607972544455---6610599807
Q ss_pred -HHHHHHHCCCCCCCEEECCCCCCCCHHH-HHHHHHHHHHHCCCCCHHCHHHHHHHHHHH
Q ss_conf -5777411288865300001589987899-999999999951967012089999999999
Q 003472 705 -NAVFDSFVGDSKLKALLHGHSYSAHALG-CAAAAKSIKWFKDPQTNHNIIPERRILREL 762 (817)
Q Consensus 705 -~~i~e~~~~~~~~~~~~h~~T~~gnPla-~Aaala~L~ile~~~~~~~l~~~~~~l~~~ 762 (817)
+++++...... ..+....|+++.... +++....+....+++..+...++++++.+.
T Consensus 271 ~~~l~~~~r~~~--~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l~~r~~~~~~L~e~ 328 (456)
T d1c7ga_ 271 DEEMFSAAKELV--VVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDK 328 (456)
T ss_dssp CHHHHHHHHHHH--HHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHC--CCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 889999999750--1467873321566889999998777730889999999999999999
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.37 E-value=3.7e-10 Score=79.28 Aligned_cols=307 Identities=12% Similarity=0.056 Sum_probs=161.5
Q ss_pred CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHCCCCC-CCEEEEECCHHHHHHHH
Q ss_conf 12203565223578998997999999998873155-58999999679999999983119998-66199907867899999
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKGW-ASRAYFSDNGSTAIEIA 477 (817)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~~~~~-~~~v~f~~SGseAvE~A 477 (817)
..||+..|. -.+...|+|.+|+.+.++...+ +..+.+..+....+++.+....+... .+.+++++++++|...+
T Consensus 32 ~vi~l~~g~----p~~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~ 107 (382)
T d1b5pa_ 32 DLVALTAGE----PDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNL 107 (382)
T ss_dssp CCEECCCSS----CSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHH
T ss_pred CEEECCCCC----CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHH
T ss_conf 828999998----9999889999999999865886899987889999999764443034112655340567789999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999985302441000248776455552089998187447864211124899887767788756876555898422247
Q 003472 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (817)
Q Consensus 478 LKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~ 557 (817)
++.. . ..| ..|+...-+|.+-. .+....+..
T Consensus 108 ~~~l----~-~~g----------------d~vl~~~P~y~~~~-~~~~~~g~~--------------------------- 138 (382)
T d1b5pa_ 108 FQAI----L-DPG----------------DEVIVLSPYWVSYP-EMVRFAGGV--------------------------- 138 (382)
T ss_dssp HHHH----C-CTT----------------CEEEEEESCCTHHH-HHHHHTTCE---------------------------
T ss_pred HHHH----C-CCC----------------CEEEECCCCCHHHH-HHHHHHCCE---------------------------
T ss_conf 9996----7-997----------------98998799847799-999984584---------------------------
Q ss_pred CCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 62121487111100023444445673012210269116899999999999741999888880799999453346897312
Q 003472 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (817)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~ 637 (817)
...++.... ++ + ..| .+.+++.+. ....+.++.-| +.=.|.+
T Consensus 139 -~~~v~~~~~-------------~~----~--~~d--------~~~l~~~~~-------~~~~~i~~~~P--~NPTG~~- 180 (382)
T d1b5pa_ 139 -VVEVETLPE-------------EG----F--VPD--------PERVRRAIT-------PRTKALVVNSP--NNPTGAV- 180 (382)
T ss_dssp -EEEEECCGG-------------GT----T--CCC--------HHHHHTTCC-------TTEEEEEEESS--CTTTCCC-
T ss_pred -EEEEECCCC-------------CC----C--CCC--------HHHHHHHCC-------CCCEEEEECCC--CCCCCHH-
T ss_conf -799855410-------------14----5--899--------999997378-------89769998999--7976600-
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCCCCCC--E--EECCCCCC-CCCCCCEEEEECHHHHHHHC
Q ss_conf 8988999999997623993998511006565563102300089996--2--20043347-88875118982257774112
Q 003472 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD--I--ACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (817)
Q Consensus 638 ~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD--I--itlgK~Lg-gGy~Plsavl~~~~i~e~~~ 712 (817)
.+..-+++|.++|++|++.+|.||++..+.--|+...... ..+| | .++||.++ .| +-+|.+++.+++.+.+.
T Consensus 181 ~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~--~~~~~~i~~~s~SK~~~~~G-lR~G~~~~~~~~i~~~~ 257 (382)
T d1b5pa_ 181 YPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGR--VAPEHTLTVNGAAKAFAMTG-WRIGYACGPKEVIKAMA 257 (382)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGG--TCTTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCEEEEEECCCCCEECCCCCCCHHH--CCCCCEEEEECCHHHCCCCH-HHEEEEEECHHHHHHHH
T ss_conf 7999999999999985908999766412321789888878--18997799946346451807-56699998999999999
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHH-HCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE-EEEEEEEE
Q ss_conf 888653000015899878999999999999-5196701208999999999999999999873999241975-51699999
Q 003472 713 GDSKLKALLHGHSYSAHALGCAAAAKSIKW-FKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-LGTLCAIE 790 (817)
Q Consensus 713 ~~~~~~~~~h~~T~~gnPla~Aaala~L~i-le~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG-~Glm~gIe 790 (817)
.- ....+...+...-.++.+.+.. ...........+.-+...+. +.+.+...+. .-+.. -|.++-++
T Consensus 258 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~g~-~~~~p~gg~~~~~~ 326 (382)
T d1b5pa_ 258 SV------SRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDL----LLEGLTALGL-KAVRPSGAFYVLMD 326 (382)
T ss_dssp HH------HHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHTC-CBCCCSBTTEEEEE
T ss_pred HH------HHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHCCC-EEECCCCEEEEEEE
T ss_conf 99------8750357653222222222233121157899999999862267----8988764497-67568941799685
Q ss_pred EECCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 71079777711299999999982989
Q 003472 791 LQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 791 l~~~~~~~~~~~~~~~~~~~l~~G~~ 816 (817)
+.... .....+...++++||.
T Consensus 327 ~~~~~-----~~~~~~~~~l~e~gV~ 347 (382)
T d1b5pa_ 327 TSPIA-----PDEVRAAERLLEAGVA 347 (382)
T ss_dssp CTTTC-----SSHHHHHHHHHHTTEE
T ss_pred CCCCC-----CCHHHHHHHHHHCCEE
T ss_conf 78999-----9999999999978979
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.36 E-value=6e-11 Score=84.25 Aligned_cols=298 Identities=11% Similarity=0.047 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHCC-----CCCCCCCCCHHHHHHHHHHHHHCCCCC-CCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999887315-----558999999679999999983119998-661999078678999999999998530244100
Q 003472 420 ELARDMGYTAARFG-----HVMFPENVYEPALECAELLLQGVGKGW-ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLV 493 (817)
Q Consensus 420 ~I~~Ai~~q~~~~~-----~~~~~~~~~~~~~eLae~L~~~~~~~~-~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~ 493 (817)
.+.+++.+.++... +.. ..+..+....+++.+.+..+... .+.+++++++++|...+++... ..
T Consensus 48 ~~~~~~~~~~~~~~~~~~~Y~~-~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~-----~~---- 117 (403)
T d1wsta1 48 TIKKIAVEVLEEHADKALQYGT-TKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFL-----NP---- 117 (403)
T ss_dssp HHHHHHHHHHHHSHHHHHSCCC-SSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHC-----CT----
T ss_pred HHHHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCHHHEEECCCCHHHHHHHHHHHH-----HC----
T ss_conf 9999999999747600148899-8677999999999999984899876773642221178899999986-----26----
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCC
Q ss_conf 02487764555520899981874478642111248998877677887568765558984222476212148711110002
Q 003472 494 DFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (817)
Q Consensus 494 ~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~ 573 (817)
...|+..+-+|.+...... ..+.. ...++....
T Consensus 118 ------------gd~v~~~~P~y~~~~~~~~-~~g~~----------------------------~~~v~~~~~------ 150 (403)
T d1wsta1 118 ------------GDPIVVEAPTYLAAIQAFK-YYDPE----------------------------FISIPLDDK------ 150 (403)
T ss_dssp ------------TCEEEEEESCCHHHHHHHH-TTCCE----------------------------EEEEEEETT------
T ss_pred ------------CCCCCCCCCCCHHHHHHHH-HCCCC----------------------------CEEEEECCC------
T ss_conf ------------8755567886303567776-40454----------------------------026752366------
Q ss_pred CCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 34444456730122102691168999999999997419998888807999994533468973128988999999997623
Q 003472 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (817)
Q Consensus 574 ~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~ 653 (817)
..+ .... ....+..... .......+++-.. +.-.|... +.+.+++|.++|++|
T Consensus 151 ------~~~----------~~~~----~~~~~~~~~~-----~~~~~~~~~~~~p-~NPtG~~~-s~~~l~~i~~~a~~~ 203 (403)
T d1wsta1 151 ------GMR----------VDLL----EEKLEELRKQ-----GKRVKIVYTVSTF-QNPAGVTM-SVDRRKKLLELANEY 203 (403)
T ss_dssp ------EEC----------HHHH----HHHHHHHHHT-----TCCCCEEEECCSS-CTTTCCCC-CHHHHHHHHHHHHHT
T ss_pred ------CCC----------CCCC----CCCCHHHHHC-----CCCCCCCCCCCCC-CCCCCCCC-CHHHHHHHHHHHHHC
T ss_conf ------774----------3112----1220001110-----1343212322466-89878639-999999999888744
Q ss_pred CCCEEEEEEEECCCCCCCCCHH----HHCCCCCCEEECCCCCCCCCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCC
Q ss_conf 9939985110065655631023----000899962200433478887511898225777411288865300001589987
Q 003472 654 KIPVIFDEVFTGFWRLGVETTA----DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAH 729 (817)
Q Consensus 654 gilLI~DEV~TGfGRtG~~~a~----e~~gv~PDIitlgK~LggGy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gn 729 (817)
++++|.||++..|...|..... +.++...-+-+++|.++.| +.+|.+++++++++.+... ....+...+
T Consensus 204 ~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G-~RiG~~i~~~~~i~~~~~~------~~~~~~~~~ 276 (403)
T d1wsta1 204 DFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILAPG-FRIGWVAAHPHLIRKMEIA------KQSIDLCTN 276 (403)
T ss_dssp TCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTCGG-GCCEEEEECHHHHHHHHHH------HHHHHSSCC
T ss_pred CCEECCCCCHHHEECCCCCCCCCCCCCCCCCEEEECCCCCEECCC-CCCCCCCCCHHHHHHHHHH------HHHHCCCCC
T ss_conf 926534502121234788787434567777079984555133685-6634444565788999998------764023455
Q ss_pred HHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEE-EEEEEEEEEEEECCCCCCCCCHHHHHHH
Q ss_conf 899999999999951967012089999999999999999998739992419-7551699999710797777112999999
Q 003472 730 ALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-VALGTLCAIELQAAGCNAGYCLIELFLY 808 (817)
Q Consensus 730 Pla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~V-rG~Glm~gIel~~~~~~~~~~~~~~~~~ 808 (817)
+....+..+.++....+.....+.+......+.+.+.+.+... ..+... -.-|+++-+++.+. .....+..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~--~~~~~~~p~gg~~~~~~~~~~------~~~~~~~~ 348 (403)
T d1wsta1 277 TFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMP--EGVEWTKPEGGMFVRVTLPEG------IDTKLMME 348 (403)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--TTCEECCCSBSSEEEEECCTT------CCTTTTHH
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC--CCEEEECCCCEEEEEEECCCC------CCHHHHHH
T ss_conf 3014567765411443046788999988899999999986466--873780788146999989999------99999999
Q ss_pred HHHHCCCC
Q ss_conf 99982989
Q 003472 809 NFLTTGMH 816 (817)
Q Consensus 809 ~~l~~G~~ 816 (817)
.++++||+
T Consensus 349 ~l~~~gV~ 356 (403)
T d1wsta1 349 RAVAKGVA 356 (403)
T ss_dssp HHHHTTEE
T ss_pred HHHHCCEE
T ss_conf 99978979
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.35 E-value=1.3e-10 Score=82.22 Aligned_cols=308 Identities=9% Similarity=0.018 Sum_probs=167.1
Q ss_pred CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-----CCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHH
Q ss_conf 1220356522357899899799999999887315558999-----99967999999998311999866199907867899
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPE-----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (817)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~~~~~~-----~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAv 474 (817)
-|+|.. ..|.. ...|.+|+.+....+....... ...+...++-+.|+++++.. -+++.|+++|++|+
T Consensus 9 ~yld~~------~~~~~-p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~i~~~~g~t~a~ 80 (381)
T d1elua_ 9 TYFNFG------GQGIL-PTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVD-PNTITITDNVTTGC 80 (381)
T ss_dssp EECCTT------TCCCC-CHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSC-GGGEEEESSHHHHH
T ss_pred EEEECC------CCCCC-CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEECCHHHHH
T ss_conf 895697------63689-99999999999998652787653156799999999999999983979-45199978858986
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999985302441000248776455552089998187447864211124899887767788756876555898422
Q 003472 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (817)
Q Consensus 475 E~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~ 554 (817)
..++... + ..+ ...|+.....|++.......+... . |.
T Consensus 81 ~~~~~~l-~---~~~----------------g~~i~~~~~~~~s~~~~~~~~~~~----~----------g~-------- 118 (381)
T d1elua_ 81 DIVLWGL-D---WHQ----------------GDEILLTDCEHPGIIAIVQAIAAR----F----------GI-------- 118 (381)
T ss_dssp HHHHHHS-C---CCT----------------TCEEEEETTCCHHHHHHHHHHHHH----H----------CC--------
T ss_pred HHCCHHH-H---HCC----------------CCEEEEECCCCCEEEECCCCCCCC----C----------CC--------
T ss_conf 2100023-3---247----------------853899546541132011122334----5----------42--------
Q ss_pred CCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 24762121487111100023444445673012210269116899999999999741999888880799999453346897
Q 003472 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (817)
Q Consensus 555 ~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG 634 (817)
....++.+... .. +..++.+++ ....++.++++..+ +...|
T Consensus 119 ---~~~~v~~~~~~-------------~~------------------~~~~~~l~~----~i~~~t~~v~i~~~-~n~tG 159 (381)
T d1elua_ 119 ---TYRFFPVAATL-------------NQ------------------GDAAAVLAN----HLGPKTRLVILSHL-LWNTG 159 (381)
T ss_dssp ---EEEEECCGGGS-------------SS------------------SCHHHHHHT----TCCTTEEEEEEESB-CTTTC
T ss_pred ---CCCCCCCCCCC-------------CC------------------CHHHHHHHH----HHCCCCCCCCCCCC-CCCCC
T ss_conf ---22232223333-------------32------------------058999986----40233222123333-45653
Q ss_pred CCCCCHHHHHHHHHHHHH----CCCCEEEEEEEECCCCCCCCCHHHHCCCCCCEEECC--CCCCCCCCCCEEEEECHHHH
Q ss_conf 312898899999999762----399399851100656556310230008999622004--33478887511898225777
Q 003472 635 MHMVDPLFQRILVKECQN----RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVF 708 (817)
Q Consensus 635 ~~~~~~~fl~~Lr~lc~~----~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDIitlg--K~LggGy~Plsavl~~~~i~ 708 (817)
...+ ++++.++|++ +++++++|.+|+ +|.. . .+.....+|+++++ |.+++. ..++.+.++++..
T Consensus 160 ~~~~----~~~I~~l~~~~~~~~~~~~~vD~~~~-~g~~--~--~~~~~~~~D~~~~s~~K~~~~p-~G~g~l~~~~~~~ 229 (381)
T d1elua_ 160 QVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSL--P--LDFSRLEVDYYAFTGHKWFAGP-AGVGGLYIHGDCL 229 (381)
T ss_dssp CBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTB--C--CCTTTSCCSEEEEESSSTTCCC-TTCEEEEECTTTG
T ss_pred CCCH----HHHHHHHHHHCCCCCCCCCCCCCCCC-CCCC--C--CCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHH
T ss_conf 1100----35788987520345321022344334-5544--4--2212222333333454422122-3056777418889
Q ss_pred HHHCCCCC-CC---------EEE------CCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 41128886-53---------000------015899878999999999999519670120899999999999999999987
Q 003472 709 DSFVGDSK-LK---------ALL------HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 709 e~~~~~~~-~~---------~~~------h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~ 772 (817)
+.+..... .. ... .....+.+-....+..++++.+.+.+..+...++...+.+++.+++ +
T Consensus 230 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L----~ 305 (381)
T d1elua_ 230 GEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGL----N 305 (381)
T ss_dssp GGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH----H
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH----H
T ss_conf 863961002445443333344334443222233322320455543300158874442110145666789999887----5
Q ss_pred CCCC---CCEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 3999---2419755169999971079777711299999999982989
Q 003472 773 SHRT---VQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 773 ~~p~---I~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~G~~ 816 (817)
+.+. +++-.-.+.++.+.+... .....+...+.++||.
T Consensus 306 ~~~~~~~~~~~~~~~~~vsf~~~~~------~~~~~i~~~L~~~gi~ 346 (381)
T d1elua_ 306 QLPHVHCLATSAPQAGLVSFTVDSP------LGHRAIVQKLEEQRIY 346 (381)
T ss_dssp HSTTEEESCSSCCSSSEEEEEECSS------SCHHHHHHHHHHTTEE
T ss_pred CCCCEEECCCCCCCCCEEEEECCCC------CCHHHHHHHHHHCCCE
T ss_conf 0897696478876531899983898------8999999999968968
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.30 E-value=1.2e-09 Score=76.02 Aligned_cols=292 Identities=14% Similarity=0.109 Sum_probs=155.8
Q ss_pred CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHH
Q ss_conf 12203565223578998997999999998873155589999996799999999831199986619990786789999999
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALK 479 (817)
.+||+++| .+.+|. .|.+.+|+.+++..+... +.... .+|-+.+++..+.. .+.++.+++..++....+.
T Consensus 23 ~~idls~~--~np~~~--p~~~~~a~~~~~~~~~~Y--p~~~~---~~Lr~aia~~~~v~-~~~I~~~~g~~~~~~~~~~ 92 (355)
T d1lc5a_ 23 QLLDFSAN--INPLGM--PVSVKRALIDNLDCIERY--PDADY---FHLHQALARHHQVP-ASWILAGNGETESIFTVAS 92 (355)
T ss_dssp GSEECSSC--CCTTCC--CHHHHHHHHHTGGGGGSC--CCTTC---HHHHHHHHHHHTSC-GGGEEEESSHHHHHHHHHH
T ss_pred HEEECCCC--CCCCCC--CHHHHHHHHHHHHHHCCC--CCCCH---HHHHHHHHHHHCCC-HHHEEECCCHHHHHHHHHH
T ss_conf 26886698--989898--999999999877773069--99975---99999999986978-7989965538999999875
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998530244100024877645555208999818744786421112489988776778875687655589842224762
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~ 559 (817)
.. .+ ..++...-+|..-........ . ..
T Consensus 93 ~~----~~-------------------~~~~v~~p~~~~~~~~~~~~~-~----------------------------~~ 120 (355)
T d1lc5a_ 93 GL----KP-------------------RRAMIVTPGFAEYGRALAQSG-C----------------------------EI 120 (355)
T ss_dssp HH----CC-------------------SEEEEEESCCTHHHHHHHHTT-C----------------------------EE
T ss_pred HH----CC-------------------CCCCCCCCCCCEECCCCCCCC-C----------------------------CC
T ss_conf 40----22-------------------322345774110001222343-4----------------------------32
Q ss_pred EEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 12148711110002344444567301221026911689999999999974199988888079999945334689731289
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~ 639 (817)
..++.+.... |.. + +.+++... ++.-+.++.-| +.-.|... +
T Consensus 121 ~~v~~~~~~~----------~~~---------~---------~~~~~~~~-------~~~~~v~l~nP--~NPtG~~~-~ 162 (355)
T d1lc5a_ 121 RRWSLREADG----------WQL---------T---------DAILEALT-------PDLDCLFLCTP--NNPTGLLP-E 162 (355)
T ss_dssp EEEECCGGGT----------TCC---------C---------TTHHHHCC-------TTCCEEEEESS--CTTTCCCC-C
T ss_pred EEEEEECCCC----------CCC---------E---------EEEEECCC-------CCCCEEEEECC--CCCCCCCC-H
T ss_conf 0354221477----------530---------0---------00000246-------66524554214--67553321-0
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCE---EECCCCCC-CCCCCCEEEEECHHHH-HHHCCC
Q ss_conf 889999999976239939985110065655631023000899962---20043347-8887511898225777-411288
Q 003472 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDI---ACYGKLLT-GGVIPLAATLATNAVF-DSFVGD 714 (817)
Q Consensus 640 ~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDI---itlgK~Lg-gGy~Plsavl~~~~i~-e~~~~~ 714 (817)
.+.++++.++|++|++++|.||++..|...+....... .-.+.+ -++||.++ .| +-+|-++++++.. +.+.
T Consensus 163 ~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~l~G-lR~G~~i~~~~~~~~~~~-- 238 (355)
T d1lc5a_ 163 RPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPAL-KDNPHIWVLRSLTKFYAIPG-LRLGYLVNSDDAAMARMR-- 238 (355)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGC-TTCTTEEEEEESTTTTTCTT-TCCEEEECCCHHHHHHHH--
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC-CCCCCCEEECCCCCCCCCCC-CCCCCEECCCHHHHHHHH--
T ss_conf 44300145421232333344333134332012222231-12443101025543331011-233423314234667877--
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECC
Q ss_conf 86530000158998789999999999995196701208999999999999999999873999241975516999997107
Q 003472 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (817)
Q Consensus 715 ~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~Glm~gIel~~~ 794 (817)
.+..++..+.++..++.++|+ +. +.+.+..+.+.+... .+.+.+.+.+.+.-....|.++-+.+..+
T Consensus 239 ------~~~~~~~~~~~~~~~a~~~l~---~~---~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~p~~~~f~~~~~~~~ 305 (355)
T d1lc5a_ 239 ------RQQMPWSVNALAALAGEVALQ---DS---AWQQATWHWLREEGA-RFYQALCQLPLLTVYPGRANYLLLRCERE 305 (355)
T ss_dssp ------HHSCTTCSCHHHHHHHHHGGG---CH---HHHHHHHHHHHHHHH-HHHHHHHTSTTEEECCCSSSEEEEEESCT
T ss_pred ------HHCCCCCCCCCCCCCCCCCCC---CC---CHHHHHHHHHHHHHH-HHHHHHHHCCCCEECCCCCEEEEEECCCC
T ss_conf ------522873212233332333322---22---205789999999999-99877764298188899877999978999
Q ss_pred CCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 9777711299999999982989
Q 003472 795 GCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 795 ~~~~~~~~~~~~~~~~l~~G~~ 816 (817)
. ..+...+.++||+
T Consensus 306 ~--------~~~~~~L~~~gv~ 319 (355)
T d1lc5a_ 306 D--------IDLQRRLLTQRIL 319 (355)
T ss_dssp T--------CCHHHHHHTTTEE
T ss_pred H--------HHHHHHHHHCCCE
T ss_conf 9--------9999999978919
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.27 E-value=2.7e-09 Score=73.75 Aligned_cols=307 Identities=10% Similarity=0.021 Sum_probs=165.2
Q ss_pred CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHCCCCC-CCEEEEECCHHHHHHHH
Q ss_conf 12203565223578998997999999998873155-58999999679999999983119998-66199907867899999
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKGW-ASRAYFSDNGSTAIEIA 477 (817)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~~~~~-~~~v~f~~SGseAvE~A 477 (817)
..||+..|. -.+..++.|.+|+++.++...+ +..+.+.-+....+++.+.+..+... -+.+.+++++++|...+
T Consensus 31 ~vi~l~~G~----p~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~ 106 (388)
T d1j32a_ 31 DVCSFSAGE----PDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNL 106 (388)
T ss_dssp CCEECCCSS----CSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHH
T ss_pred CEEECCCCC----CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHH
T ss_conf 868999978----9999989999999999855887789998899999999999887316577885599868789999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999985302441000248776455552089998187447864211124899887767788756876555898422247
Q 003472 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (817)
Q Consensus 478 LKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~ 557 (817)
++.. . ..| ..|+..+-+|.+-.. .....+.
T Consensus 107 ~~~~----~-~~g----------------d~Vlv~~P~y~~~~~-~~~~~~~---------------------------- 136 (388)
T d1j32a_ 107 MLAM----I-EPG----------------DEVIIPAPFWVSYPE-MVKLAEG---------------------------- 136 (388)
T ss_dssp HHHH----C-CTT----------------CEEEEESSCCTHHHH-HHHHTTC----------------------------
T ss_pred HHHH----H-CCC----------------CEEEECCCCCHHHHH-HHHHHCC----------------------------
T ss_conf 9998----1-998----------------989992898187999-9998568----------------------------
Q ss_pred CCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 62121487111100023444445673012210269116899999999999741999888880799999453346897312
Q 003472 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (817)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~ 637 (817)
..+.+|... +.-+ .-| .+.+++.+. +...+.++.-| +.=.|.+
T Consensus 137 --~~v~~~~~~---------------~~~~--~~d--------~~~l~~~~~-------~~~~~~~~~~P--~NPTG~~- 179 (388)
T d1j32a_ 137 --TPVILPTTV---------------ETQF--KVS--------PEQIRQAIT-------PKTKLLVFNTP--SNPTGMV- 179 (388)
T ss_dssp --EEEEECCCG---------------GGTT--CCC--------HHHHHHHCC-------TTEEEEEEESS--CTTTCCC-
T ss_pred --EEEEEECCC---------------CCCC--CCC--------HHHHHHHCC-------CCCEEEEECCC--CCCCCCC-
T ss_conf --599983153---------------3366--789--------999997277-------78749998899--9987740-
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCCCCC-----CE--EECCCCCC-CCCCCCEEEEECHHHHH
Q ss_conf 898899999999762399399851100656556310230008999-----62--20043347-88875118982257774
Q 003472 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP-----DI--ACYGKLLT-GGVIPLAATLATNAVFD 709 (817)
Q Consensus 638 ~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~P-----DI--itlgK~Lg-gGy~Plsavl~~~~i~e 709 (817)
.+...+++|.++|+++|+.+|.||++..+...+..+..- ....| .+ -.+||.++ .| +-+|-+++.+++.+
T Consensus 180 ~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~-~~~~~~~~~~~i~~~S~SK~~~~~G-lRvG~~~~~~~~~~ 257 (388)
T d1j32a_ 180 YTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSI-GAASPEAYERSVVCSGFAKTYAMTG-WRVGFLAGPVPLVK 257 (388)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCG-GGSCHHHHHTEEEEEESTTTTTCTT-TCCEEEECCHHHHH
T ss_pred CCHHHHHHHHCCCCCCCEEEECHHHHHCCCCCCCCCCCH-HHHCCCCCCCEEEECCCHHHHHCCH-HHEEEEEECHHHHH
T ss_conf 353555443201123786797205653103467788788-8948522156057037705413606-57599998899999
Q ss_pred HHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-EEEEE
Q ss_conf 11288865300001589987899999999999951967012089999999999999999998739992419755-16999
Q 003472 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCA 788 (817)
Q Consensus 710 ~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~-Glm~g 788 (817)
.+... ....+...++.+-.++...++. .+ +.+.+..+.+.+... .+.+.+++++.+.-.... |.++-
T Consensus 258 ~~~~~------~~~~~~~~~~~~q~a~~~~~~~--~~---~~~~~~~~~~~~~~~-~~~~~l~~~~g~~~~~p~gg~~l~ 325 (388)
T d1j32a_ 258 AATKI------QGHSTSNVCTFAQYGAIAAYEN--SQ---DCVQEMLAAFAERRR-YMLDALNAMPGLECPKPDGAFYMF 325 (388)
T ss_dssp HHHHH------HHTTTCSCCHHHHHHHHHHHHS--CS---HHHHHHHHHHHHHHH-HHHHHHHTCTTCBCCCCCBTTEEC
T ss_pred HHHHH------HHHCCCCCCHHHHHHHHHCCCC--HH---HHHHHHHHHHHHHHH-HHHHHHHHCCCCEECCCCCEEEEE
T ss_conf 99876------6521245668999887632445--09---999999999999999-999999847997866899368999
Q ss_pred EEEECCCCCCCCCHHHHHHHHHH-HCCCC
Q ss_conf 99710797777112999999999-82989
Q 003472 789 IELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 789 Iel~~~~~~~~~~~~~~~~~~~l-~~G~~ 816 (817)
+++.... .....+..+++ ++||.
T Consensus 326 ~~l~~~~-----~~~~~~~~~ll~~~gV~ 349 (388)
T d1j32a_ 326 PSIAKTG-----RSSLDFCSELLDQHQVA 349 (388)
T ss_dssp CBCGGGT-----CCHHHHHHHHHHHHCEE
T ss_pred EECCCCC-----CCHHHHHHHHHHHCCEE
T ss_conf 9888879-----99999999999869999
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.24 E-value=6.6e-11 Score=84.00 Aligned_cols=246 Identities=10% Similarity=-0.035 Sum_probs=134.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 97999999998873155589999996799999999831199986619990786789999999999985302441000248
Q 003472 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (817)
Q Consensus 418 ~p~I~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~ 497 (817)
++.+.++..+.++.+.... ....++.+...+.++....+.++.+++|++|+.+++...
T Consensus 31 ~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al---------------- 88 (366)
T d2aeua1 31 GFLIDEKDKALLNTYIGSS------YFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL---------------- 88 (366)
T ss_dssp CCCCCHHHHHHHTSTTHHH------HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH----------------
T ss_pred CCCCCHHHHHHHHHHCCCH------HHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHH----------------
T ss_conf 8886488999999843824------568999999998706898447999688999999999983----------------
Q ss_pred CCCCCCCCCEEEEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCC
Q ss_conf 776455552089998-1874478642111248998877677887568765558984222476212148711110002344
Q 003472 498 KDTTEKCIELKVLAL-KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (817)
Q Consensus 498 ~~~~~~~~r~~II~~-~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~ 576 (817)
..+..+|.+ +...|.+...++.+.+.. .+
T Consensus 89 ------~~~~~vi~~~~~~~~~~~~~~~~l~g~~------------------------------~v-------------- 118 (366)
T d2aeua1 89 ------KPKKVIHYLPELPGHPSIERSCKIVNAK------------------------------YF-------------- 118 (366)
T ss_dssp ------CCSEEEEECSSSSCCTHHHHHHHHTTCE------------------------------EE--------------
T ss_pred ------CCCCEEEEECCCCCCHHHHHHHHHCCCE------------------------------EE--------------
T ss_conf ------8999799946998624199889762886------------------------------77--------------
Q ss_pred CCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 44456730122102691168999999999997419998888807999994533468973128988999999997623993
Q 003472 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (817)
Q Consensus 577 ~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gil 656 (817)
.++|+ +.+++.+. ++..+|+++......+ .+..-++++.++|++||++
T Consensus 119 --~~~d~------------------e~l~~~i~--------~~tk~i~~~~p~n~~~----~~~~~l~~i~~ia~~~~~~ 166 (366)
T d2aeua1 119 --ESDKV------------------GEILNKID--------KDTLVIITGSTMDLKV----IELENFKKVINTAKNKEAI 166 (366)
T ss_dssp --EESCH------------------HHHHTTCC--------TTEEEEEECBCTTSCB----CCHHHHHHHHHHHHHHTCC
T ss_pred --CCCCH------------------HHHHHHCC--------CCCEEEEEEECCCCCC----CCHHHHHHHHHHHCCCCEE
T ss_conf --79999------------------99997368--------7760799994588886----7879999999874008178
Q ss_pred EEEEEEEECCCCCCCCCHHHHCCCCCCEE--ECCCCCCCCCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCHHHHH
Q ss_conf 99851100656556310230008999622--0043347888751189822577741128886530000158998789999
Q 003472 657 VIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCA 734 (817)
Q Consensus 657 LI~DEV~TGfGRtG~~~a~e~~gv~PDIi--tlgK~LggGy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnPla~A 734 (817)
+|+||++. .+..+..+.........|++ +++|.++| .-+|.+++++++++.+... ....+++.+|..+.
T Consensus 167 ~i~De~y~-~~~~~~~~~~~~~~~~~di~~~S~sK~~~g--~~~G~i~~~~~~i~~~~~~------~~~~g~~~~~~~~~ 237 (366)
T d2aeua1 167 VFVDDASG-ARVRLLFNQPPALKLGADLVVTSTDKLMEG--PRGGLLAGKKELVDKIYIE------GTKFGLEAQPPLLA 237 (366)
T ss_dssp EEEECTTH-HHHHHHTTCCCHHHHTCSEEEEETTSSSSS--CSCEEEEEEHHHHHHHHHH------HHTTTCBCCHHHHH
T ss_pred EEEECCCC-CCCCCCCCCCCHHHCCCEEEEECCCCCCCC--CCEEEEEECHHHHHHHHHH------HHCCCCCCCHHHHH
T ss_conf 99956721-432364468987662861787136444545--5215897067789999999------72235568779899
Q ss_pred HHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999951967012089999999999999999998739992
Q 003472 735 AAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (817)
Q Consensus 735 aala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I 777 (817)
++.++|+.+.- ...++..++.+.+...+.+.+.......+..
T Consensus 238 a~~~aL~tl~~-~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 279 (366)
T d2aeua1 238 GIYRALKNFNL-ERIRKAFERAKNFDLSKIEKLNKELKAIDDN 279 (366)
T ss_dssp HHHHHHHHCCH-HHHHHHHHHHHHCCCHHHHHHHHHHTTTCTT
T ss_pred HHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 88889986049-9999999999999999886041111335666
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.23 E-value=1.2e-09 Score=76.06 Aligned_cols=275 Identities=11% Similarity=-0.007 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 99999999831199986619990786789999999999985302441000248776455552089998187447864211
Q 003472 445 ALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524 (817)
Q Consensus 445 ~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~gal 524 (817)
..++.+.++++++.+......++++|+++...++.+++|.+. +.+ +.|.....-|.+..-++
T Consensus 96 e~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~-----------------~~~-~~vi~~~~~H~s~~~a~ 157 (445)
T d3bc8a1 96 TNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKR-----------------PKA-KYIIWPRIDQKSCFKSM 157 (445)
T ss_dssp HHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHC-----------------TTC-CEEEEECCCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-----------------CCC-CEEEECCCCCHHHHHHH
T ss_conf 999999999985999666751356554999999999999837-----------------899-98998185548899999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHH
Q ss_conf 12489988776778875687655589842224762121487111100023444445673012210269116899999999
Q 003472 525 EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYI 604 (817)
Q Consensus 525 slt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~l 604 (817)
...+.... +++ .++..+.+ .-| .+.+
T Consensus 158 ~~~g~~~~--------------~v~-----------~~~~~~~~---------------------~id--------~~~l 183 (445)
T d3bc8a1 158 VTAGFEPV--------------VIE-----------NVLEGDEL---------------------RTD--------LKAV 183 (445)
T ss_dssp HHTTCEEE--------------EEC-----------CEEETTEE---------------------ECC--------HHHH
T ss_pred HHCCCEEE--------------EEE-----------EECCCCCC---------------------CCC--------HHHH
T ss_conf 98199347--------------998-----------62258323---------------------569--------9999
Q ss_pred HHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC----CCHHHHCCC
Q ss_conf 9997419998888807999994533468973128988999999997623993998511006565563----102300089
Q 003472 605 SQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTADLLGC 680 (817)
Q Consensus 605 e~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~----~~a~e~~gv 680 (817)
++.+++ ...+.+++|++... ....|...+ ++++.++|++||+++++|+++.++ -.+. .++....
T Consensus 184 ~~~i~~----~~~~~~~~v~~~~~-~~~~G~~~~----~~~i~~~~~~~~~~l~vD~a~~~~-~~~~~~~~~~~~~~~-- 251 (445)
T d3bc8a1 184 EAKIQE----LGPEHILCLHSTTA-CFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQ-SSKCMHLIQQGARVG-- 251 (445)
T ss_dssp HHHHHH----HCGGGEEEEEEESS-CCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTT-CHHHHHHHHHHHHHS--
T ss_pred HHHHHH----CCCCCEEEEEEECC-CCCCEEEHH----HHHHHHHHHHHCCCEEEECCCHHH-HHHCCCCCHHCCCCC--
T ss_conf 999975----35557389999689-878746530----999999999719928997463355-342154231026767--
Q ss_pred CCCEEEC--CCCCCCCCCCCEEEEECH-HHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHH
Q ss_conf 9962200--433478887511898225-7774112888653000015899878999999999999519670120899999
Q 003472 681 VPDIACY--GKLLTGGVIPLAATLATN-AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERR 757 (817)
Q Consensus 681 ~PDIitl--gK~LggGy~Plsavl~~~-~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~ 757 (817)
..|++++ .|.++++ ...++++.++ .+.+.+.. ...+.+.........+.+..+...+. ....+...
T Consensus 252 ~vd~~~~s~hK~~~~p-~g~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~ 320 (445)
T d3bc8a1 252 RIDAFVQSLDKNFMVP-VGGAIIAGFNEPFIQDISK---------MYPGRASASPSLDVLITLLSLGCSGY-RKLLKERK 320 (445)
T ss_dssp CCCEEEEEHHHHHSCC-SSCEEEEESCHHHHHHHHH---------HSCSCBCSHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred CCCEEEECCCCCCCCC-CCCCEEEECCHHHHHHHHH---------HHHHCCCCCCHHHHHHHHHHHHHHCC-HHHHHHHH
T ss_conf 7426994176455568-9986301077678999998---------87531657614888887898743011-00589999
Q ss_pred HHHHHHHHHHHHHHHCCC-CCCEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 999999999999987399-9241975516999997107977771129999999998298
Q 003472 758 ILRELWDLELIQQISSHR-TVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGM 815 (817)
Q Consensus 758 ~l~~~l~~~l~~~~~~~p-~I~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~G~ 815 (817)
.+..++.+.+.+....+. .+...........+.+.... .........+...+.+.||
T Consensus 321 ~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~-~~~~~~~~~l~~~L~~~gI 378 (445)
T d3bc8a1 321 EMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTID-GHHDKAVTQLGSMLFTRQV 378 (445)
T ss_dssp HHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTS-SSSSCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEEECC-CCCCCCHHHHHHHHHHCCC
T ss_conf 999999999998775448466357888731278863036-6687789999999997297
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.23 E-value=6.1e-10 Score=77.90 Aligned_cols=153 Identities=12% Similarity=0.046 Sum_probs=85.1
Q ss_pred HHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCCCC
Q ss_conf 99999974199988888079999945334689731289889999999976239939985110065655631023000899
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (817)
Q Consensus 602 ~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (817)
+.+++.+++. ...+.+++|++... ...+|...+ ++++.++|++||+++++|+++.++......+........
T Consensus 197 ~~l~~~i~~~---~~~~~~~~v~~~~~-~~~~g~~~~----l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~ 268 (434)
T d2z67a1 197 EDIENAIKKE---IELGNRPCVLSTLT-FFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYR 268 (434)
T ss_dssp HHHHHHHHHH---HHTTCCEEEEEESS-CCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHH---HHCCCCEEEEECCC-CCCCCCCCC----HHHHHHHHHHHCCEEEEECCCHHHHHHCCCCCCCCCCCC
T ss_conf 9999999854---51188128996157-678863259----999999999809908981400466552344454444478
Q ss_pred CCEEECC--CCCCCCCCCCEEEEECH-HHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHH
Q ss_conf 9622004--33478887511898225-77741128886530000158998789999999999995196701208999999
Q 003472 682 PDIACYG--KLLTGGVIPLAATLATN-AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRI 758 (817)
Q Consensus 682 PDIitlg--K~LggGy~Plsavl~~~-~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~ 758 (817)
.|+++++ |.++++ ...+++..++ .+.+.+... ..+.+.......+.+++..+..... ..+.++...
T Consensus 269 ~D~~~~s~hK~l~~~-~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~l~~~~~~g~----~~~~~~~~~ 337 (434)
T d2z67a1 269 VDAVVSSSDKNLLTP-IGGGLVYSTDAEFIKEISLS------YPGRASATPVVNTLVSLLSMGSKNY----LELVKNQKN 337 (434)
T ss_dssp CSEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHTT------SCSCBCSHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred CCEEEECCCCCCCCC-CCCCCCCCCCHHHHHHHHHH------CCCCCCCCHHHHHHHHHHHHHHHCC----HHHHHHHHH
T ss_conf 656997372333567-88640003867899999763------2244654359999999999987302----368999999
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999999873
Q 003472 759 LRELWDLELIQQISS 773 (817)
Q Consensus 759 l~~~l~~~l~~~~~~ 773 (817)
+..++.+.+.++...
T Consensus 338 ~a~~l~~~L~~l~~~ 352 (434)
T d2z67a1 338 SKKLLDELLNDLSKK 352 (434)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999976523
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.21 E-value=1.2e-09 Score=76.08 Aligned_cols=261 Identities=11% Similarity=0.002 Sum_probs=129.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 35789989979999999988731555899999967999999998311999866199907867899999999999853024
Q 003472 410 TQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH 489 (817)
Q Consensus 410 ~~~lGh~~~p~I~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~ 489 (817)
|.|..=. ||+|++|+.++.....+. ....+...++.++++++++.+ .+.++|+++|+|||..|++.+. .
T Consensus 6 nd~~~g~-~P~v~eAl~~~~~~~~~~---y~~~~~~~~lr~~ia~~~g~~-~~~v~~tsggtean~~a~~~~~-~----- 74 (340)
T d1svva_ 6 NDYSVGM-HPKILDLMARDNMTQHAG---YGQDSHCAKAARLIGELLERP-DADVHFISGGTQTNLIACSLAL-R----- 74 (340)
T ss_dssp CSCSSCC-CHHHHHHHHHHTTCCCCS---TTCSHHHHHHHHHHHHHHTCT-TSEEEEESCHHHHHHHHHHHHC-C-----
T ss_pred CCCCCCC-CHHHHHHHHHHHHCCCCC---CCCCHHHHHHHHHHHHHHCCC-CCEEEECCCHHHHHHHHHHHHH-H-----
T ss_conf 6889888-999999999986037778---788989999999999986899-6449980888999999999876-5-----
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHH
Q ss_conf 41000248776455552089998187447864211124899887767788756876555898422247621214871111
Q 003472 490 EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569 (817)
Q Consensus 490 G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~ 569 (817)
...+++.....++................ ......
T Consensus 75 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~--- 109 (340)
T d1svva_ 75 ---------------PWEAVIATQLGHISTHETGAIEATGHKVV---------------------------TAPCPD--- 109 (340)
T ss_dssp ---------------TTEEEEEETTSHHHHSSTTHHHHTTCCEE---------------------------EECCTT---
T ss_pred ---------------HCCCCCCCCCCCEEEEECCCCCCCCEEEE---------------------------ECCCCC---
T ss_conf ---------------30122323343225541223211220122---------------------------013333---
Q ss_pred HCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 00023444445673012210269116899999999999741999888880799999453346897312898899999999
Q 003472 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE 649 (817)
Q Consensus 570 ~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~l 649 (817)
.. .+ . ....+ ...... ........+++... .+++|... +...+..+...
T Consensus 110 -----------~~--------~~--~--~~~~~-~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~ 158 (340)
T d1svva_ 110 -----------GK--------LR--V--ADIES-ALHENR-----SEHMVIPKLVYISN-TTEVGTQY-TKQELEDISAS 158 (340)
T ss_dssp -----------SC--------CC--H--HHHHH-HHHHSC-----STTSCEEEEEEEES-SCTTSCCC-CHHHHHHHHHH
T ss_pred -----------CC--------CC--C--HHHHH-HHHHHH-----CCCCCCCEEEEECC-CCCCCCCC-CHHHHHHHHCC
T ss_conf -----------22--------23--2--56899-764111-----03677621443102-22554456-67875310000
Q ss_pred HHHCCCCEEEEEEEECCCCCCC--CCHHHHCCCCCCEEECCCCCCCCCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCC
Q ss_conf 7623993998511006565563--10230008999622004334788875118982257774112888653000015899
Q 003472 650 CQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYS 727 (817)
Q Consensus 650 c~~~gilLI~DEV~TGfGRtG~--~~a~e~~gv~PDIitlgK~LggGy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~ 727 (817)
|+++|+++++|+++.+...... .+.........++...++..+.+ .+................. ....+.+
T Consensus 159 ~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~ 231 (340)
T d1svva_ 159 CKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGG-MFGEALIILNDALKPNARH------LIKQRGA 231 (340)
T ss_dssp HHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTC-SSCEEEEECSGGGCTTHHH------HHHHTTC
T ss_pred CCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCC-CCCCCCCCCCHHHHHHHHH------HCCCCCC
T ss_conf 00010003430111000102564334322344443056337766655-5322322342244555553------0134667
Q ss_pred CCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHH
Q ss_conf 87899999999999951967012089999999999999
Q 003472 728 AHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDL 765 (817)
Q Consensus 728 gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~ 765 (817)
.++...+++.+.+..++. .......+.......++..
T Consensus 232 ~~~~~~~~~aa~~~~~~~-~~~~~~~~~~~~~~~~~~~ 268 (340)
T d1svva_ 232 LMAKGWLLGIQFEVLMKD-NLFFELGAHSNKMAAILKA 268 (340)
T ss_dssp CCTTTHHHHHHHHHHTST-THHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_conf 652156778999987413-6888889999887765577
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.21 E-value=7e-09 Score=71.17 Aligned_cols=308 Identities=14% Similarity=0.067 Sum_probs=159.4
Q ss_pred CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHCCC--CCCCEEEEECCHHHHHHH
Q ss_conf 1220356522357899899799999999887315-5589999996799999999831199--986619990786789999
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGK--GWASRAYFSDNGSTAIEI 476 (817)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~--~~~~~v~f~~SGseAvE~ 476 (817)
..||+..|. -++..++.|.+++++.+++.. .+....+..+....+++.+....+. ...+.+.++++++++...
T Consensus 26 dvi~l~~g~----p~~~~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~ 101 (388)
T d1gdea_ 26 DVISLGIGE----PDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM 101 (388)
T ss_dssp TCEECCCCS----CCSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred CEEECCCCC----CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHEEEECCCCCHHHHH
T ss_conf 819999988----9998789999999999855764789985779999999999875133567870204313675358899
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999998530244100024877645555208999818744786421112489988776778875687655589842224
Q 003472 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (817)
Q Consensus 477 ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~ 556 (817)
++... ...| ..|+...-+|.+-...+...+ ..
T Consensus 102 ~~~~l-----~~~g----------------d~vlv~~P~y~~~~~~~~~~g-~~-------------------------- 133 (388)
T d1gdea_ 102 GLSAF-----LKDG----------------EEVLIPTPAFVSYAPAVILAG-GK-------------------------- 133 (388)
T ss_dssp HHTTT-----CCTT----------------CEEEEEESCCTTHHHHHHHHT-CE--------------------------
T ss_pred HHHHH-----CCCC----------------CEEEECCCCCHHHHHHHHHCC-CE--------------------------
T ss_conf 99986-----5897----------------989988998488999999859-98--------------------------
Q ss_pred CCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 76212148711110002344444567301221026911689999999999974199988888079999945334689731
Q 003472 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (817)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~ 636 (817)
.+.+|-.. ++.| +-| .+.+++.+. ....+.++.-| +.=.|..
T Consensus 134 ----~~~~~~~~---------------~~~~--~~d--------~~~l~~~~~-------~~~~~i~~~~P--~NPtG~~ 175 (388)
T d1gdea_ 134 ----PVEVPTYE---------------EDEF--RLN--------VDELKKYVT-------DKTRALIINSP--CNPTGAV 175 (388)
T ss_dssp ----EEEEECCG---------------GGTT--CCC--------HHHHHHHCC-------TTEEEEEEESS--CTTTCCC
T ss_pred ----EEEEECCC---------------CCCC--CCC--------HHHHHHHCC-------CCCEEEEECCC--CCCCCCC
T ss_conf ----99951455---------------6687--879--------999997375-------68759998999--6988886
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC-HHHHCCCCCC--EE--ECCCCCC-CCCCCCEEEEECHHHHHH
Q ss_conf 2898899999999762399399851100656556310-2300089996--22--0043347-888751189822577741
Q 003472 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD--IA--CYGKLLT-GGVIPLAATLATNAVFDS 710 (817)
Q Consensus 637 ~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PD--Ii--tlgK~Lg-gGy~Plsavl~~~~i~e~ 710 (817)
. +.+.+++|.++|++|++++|.||++..|.-.+..+ ......-.+| |+ ++||.++ .| +-+|.+++.+++.+.
T Consensus 176 ~-s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lR~G~ii~~~~~~~~ 253 (388)
T d1gdea_ 176 L-TKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTG-WRLGFVAAPSWIIER 253 (388)
T ss_dssp C-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGG-GCCEEEECCHHHHHH
T ss_pred C-CHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCCHHHCCCCCCEEEEEECCHHHCCCCC-CCEEEEEEECCCHHH
T ss_conf 8-99999999999998699999970886553336777776560577880899957724333763-617899730210234
Q ss_pred HCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE-EEEEEEE
Q ss_conf 128886530000158998789999999999995196701208999999999999999999873999241975-5169999
Q 003472 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-LGTLCAI 789 (817)
Q Consensus 711 ~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG-~Glm~gI 789 (817)
+... ....+...+...-.++.+++ +++.....+....+.+..... .+.+.+...... .+.. -|.++-+
T Consensus 254 ~~~~------~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~-~~~p~gg~fl~~ 322 (388)
T d1gdea_ 254 MVKF------QMYNATCPVTFIQYAAAKAL---KDERSWKAVEEMRKEYDRRRK-LVWKRLNEMGLP-TVKPKGAFYIFP 322 (388)
T ss_dssp HHHH------HHTTTCSCCHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTCC-CCCCCBTTEECC
T ss_pred HHHC------CCCCCCCCCCCCHHHHHHHH---HHCCCHHHHHHHHHHHHHHHH-HHHHHHHHCCCC-CCCCCCEEEEEE
T ss_conf 3211------23222333322004578998---603203689999999987533-456665321256-658983379999
Q ss_pred EEECCCCCCCCCHHHHHHHHHH-HCCC
Q ss_conf 9710797777112999999999-8298
Q 003472 790 ELQAAGCNAGYCLIELFLYNFL-TTGM 815 (817)
Q Consensus 790 el~~~~~~~~~~~~~~~~~~~l-~~G~ 815 (817)
++.+.+ .....+..+++ +.||
T Consensus 323 ~l~~~~-----~~~~~~~~~ll~e~gV 344 (388)
T d1gdea_ 323 RIRDTG-----LTSKKFSELMLKEARV 344 (388)
T ss_dssp BCGGGT-----CCHHHHHHHHHHHTCE
T ss_pred ECCCCC-----CCHHHHHHHHHHHCCE
T ss_conf 888879-----9999999999985999
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=2.3e-08 Score=67.95 Aligned_cols=300 Identities=10% Similarity=-0.017 Sum_probs=145.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9899799999999887315558999999679999999983119998-661999078678999999999998530244100
Q 003472 415 ATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGW-ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLV 493 (817)
Q Consensus 415 h~~~p~I~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~-~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~ 493 (817)
+...|.|.+|+.+.+....+.-.+....+....+++++.+..+... .+.++.++++++|...++... . ..|
T Consensus 11 f~~p~~i~eal~~~~~~~~~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l----~-~~g--- 82 (361)
T d1d2fa_ 11 FATAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQW----S-ETG--- 82 (361)
T ss_dssp SCCCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHS----S-CTT---
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHC----C-CCC---
T ss_conf 99989999999999857888998998989999999999998389998025999088899999876531----1-123---
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCC
Q ss_conf 02487764555520899981874478642111248998877677887568765558984222476212148711110002
Q 003472 494 DFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (817)
Q Consensus 494 ~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~ 573 (817)
.+|+..+-+|.+.. ......+... ..++.....
T Consensus 83 -------------d~Vlv~~P~y~~~~-~~~~~~g~~~----------------------------~~v~~~~~~----- 115 (361)
T d1d2fa_ 83 -------------EGVVIHTPAYDAFY-KAIEGNQRTV----------------------------MPVALEKQA----- 115 (361)
T ss_dssp -------------CEEEEEESCCHHHH-HHHHHTTCEE----------------------------EEEECEECS-----
T ss_pred -------------CCCCCCCCCCCCHH-HHHHHHCCEE----------------------------EEECCCCCC-----
T ss_conf -------------22323333452036-8998503437----------------------------861133332-----
Q ss_pred CCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 34444456730122102691168999999999997419998888807999994533468973128988999999997623
Q 003472 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (817)
Q Consensus 574 ~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~ 653 (817)
+--+.| .+.+++.+. ..++.++++-.- +.-.|... +.+.++++.++|+++
T Consensus 116 ---~~~~~d------------------~~~~~~~~~-------~~~~~~i~l~~p-~NPTG~~~-s~~~~~~i~~~~~~~ 165 (361)
T d1d2fa_ 116 ---DGWFCD------------------MGKLEAVLA-------KPECKIMLLCSP-QNPTGKVW-TCDELEIMADLCERH 165 (361)
T ss_dssp ---SSEECC------------------HHHHHHHHT-------STTEEEEEEESS-CTTTCCCC-CTTHHHHHHHHHHHT
T ss_pred ---CCCCCC------------------CCCCHHHCC-------CCCCEEEEECCC-CCCCCCCC-CHHHHHHHHHHHHHH
T ss_conf ---223322------------------211021003-------677416873044-43223332-023434320011332
Q ss_pred CCCEEEEEEEECCCCCCCCCHHHHCCCCC-CEE---ECCCCCCC-CCCCCEEEEECH-HHHHHHCCCCCCCEEECCC-CC
Q ss_conf 99399851100656556310230008999-622---00433478-887511898225-7774112888653000015-89
Q 003472 654 KIPVIFDEVFTGFWRLGVETTADLLGCVP-DIA---CYGKLLTG-GVIPLAATLATN-AVFDSFVGDSKLKALLHGH-SY 726 (817)
Q Consensus 654 gilLI~DEV~TGfGRtG~~~a~e~~gv~P-DIi---tlgK~Lgg-Gy~Plsavl~~~-~i~e~~~~~~~~~~~~h~~-T~ 726 (817)
|+++|.||++..|-..+..... .....+ +.+ .++|.++- | +-++.+.... ...+..... ..... ..
T Consensus 166 ~~~lI~De~y~~~~~~~~~~~~-~~~~~~~~~v~~~s~SK~~~~~g-~R~g~~~~~~~~~~~~~~~~-----~~~~~~~~ 238 (361)
T d1d2fa_ 166 GVRVISDEIHMDMVWGEQPHIP-WSNVARGDWALLTSGSKSFNIPA-LTGAYGIIENSSSRDAYLSA-----LKGRDGLS 238 (361)
T ss_dssp TCEEEEECTTTTCBCSSSCCCC-GGGTCCSSEEEEECSHHHHTCGG-GCCEEEEECSHHHHHHHHHH-----HHTTSCCC
T ss_pred HEEEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC-CCCEEEECCHHHHHHHHHHH-----CCCCCCCC
T ss_conf 2000102343323233334565-32222233333334454444445-42003413226788887651-----02234665
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE-EEEEEEEEEECCCCCCCCCHHHH
Q ss_conf 98789999999999995196701208999999999999999999873999241975-51699999710797777112999
Q 003472 727 SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYCLIEL 805 (817)
Q Consensus 727 ~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG-~Glm~gIel~~~~~~~~~~~~~~ 805 (817)
+.+..+.++++..++.. .+..+.+....+.....+.+.+. +..+.+.-... -|.+.-+++...+ .....
T Consensus 239 ~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~r~~~~~~~~~---~~~~~~~~~~p~gg~~~~~~l~~~~-----~~~~~ 308 (361)
T d1d2fa_ 239 SPSVLALTAHIAAYQQG--APWLDALRIYLKDNLTYIADKMN---AAFPELNWQIPQSTYLAWLDLRPLN-----IDDNA 308 (361)
T ss_dssp SCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHH---HHCSSCCCCCCSBCSEEEEECGGGC-----CCHHH
T ss_pred CCHHHHHHHHHHHHHCC--CHHHHCCCCCCHHHHHHHHHHHH---HHCCCCCCCCCCCEEEEEEECCCCC-----CCHHH
T ss_conf 10012478899875034--11210133322036778888765---3102233555674159999835899-----99999
Q ss_pred HHHHHHHC-CCC
Q ss_conf 99999982-989
Q 003472 806 FLYNFLTT-GMH 816 (817)
Q Consensus 806 ~~~~~l~~-G~~ 816 (817)
|...++++ ||+
T Consensus 309 ~~~~Ll~~~gv~ 320 (361)
T d1d2fa_ 309 LQKALIEQEKVA 320 (361)
T ss_dssp HHHHHHHTTCEE
T ss_pred HHHHHHHHCCEE
T ss_conf 999999869999
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.19 E-value=1e-08 Score=70.17 Aligned_cols=272 Identities=15% Similarity=0.091 Sum_probs=150.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 97999999998873155589999996799999999831199986619990786789999999999985302441000248
Q 003472 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (817)
Q Consensus 418 ~p~I~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~ 497 (817)
+|.+.+|+++.+++...+..+.+ ..+|-+.++++.+.. .+.+++++++++|+..+++... ..
T Consensus 40 p~~i~~al~~~l~~~~~Y~~~~G----~~elr~aiA~~~~~~-~~~Iiit~G~~~al~~~~~~l~-----~~-------- 101 (368)
T d1v2da_ 40 PPFLLEAVRRALGRQDQYAPPAG----LPALREALAEEFAVE-PESVVVTSGATEALYVLLQSLV-----GP-------- 101 (368)
T ss_dssp CHHHHHHHHHHTTTSCSCCCTTC----CHHHHHHHHHHHTSC-GGGEEEESSHHHHHHHHHHHHC-----CT--------
T ss_pred CHHHHHHHHHHHHCCCCCCCCCC----CHHHHHHHHHHCCCC-CCCEEECCCHHHHHHHHHHCCC-----CC--------
T ss_conf 99999999998602568899867----899999997525557-7412651530788877765044-----44--------
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCC
Q ss_conf 77645555208999818744786421112489988776778875687655589842224762121487111100023444
Q 003472 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (817)
Q Consensus 498 ~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~ 577 (817)
...|+...-+|+............ ...++.+...
T Consensus 102 --------~d~v~~~~p~~~~~~~~~~~~g~~-----------------------------~~~~~~~~~~--------- 135 (368)
T d1v2da_ 102 --------GDEVVVLEPFFDVYLPDAFLAGAK-----------------------------ARLVRLDLTP--------- 135 (368)
T ss_dssp --------TCEEEEEESCCTTHHHHHHHTTCE-----------------------------EEEEECEEET---------
T ss_pred --------CCCCCCCCCCCHHHHHHHHHCCCC-----------------------------CCEECCCCCC---------
T ss_conf --------565323588501345678751773-----------------------------2000135434---------
Q ss_pred CCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 44567301221026911689999999999974199988888079999945334689731289889999999976239939
Q 003472 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (817)
Q Consensus 578 ~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilL 657 (817)
+. ..-| .+.+++.+. +.....++.-| +.-.|... +.+.+++|.++|++||+.+
T Consensus 136 ---~~------~~~d--------~~~l~~~~~-------~~~~~i~~~~p--~NPtG~~~-~~~~l~~l~~~a~~~~i~i 188 (368)
T d1v2da_ 136 ---EG------FRLD--------LSALEKALT-------PRTRALLLNTP--MNPTGLVF-GERELEAIARLARAHDLFL 188 (368)
T ss_dssp ---TE------EECC--------HHHHHTTCC-------TTEEEEEEESS--CTTTCCCC-CHHHHHHHHHHHHHTTCEE
T ss_pred ---CC------CCCC--------HHHHHHHHC-------CCCEEEEECCC--CCCCCCCC-CHHHHHHHHHHHHHCCCEE
T ss_conf ---54------4478--------899997533-------57659997699--88666669-9999999999999849826
Q ss_pred EEEEEEECCCCCCCCCHHHHCCCCCC--EEECCCCCCC-CCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCHHHHH
Q ss_conf 98511006565563102300089996--2200433478-88751189822577741128886530000158998789999
Q 003472 658 IFDEVFTGFWRLGVETTADLLGCVPD--IACYGKLLTG-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCA 734 (817)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv~PD--IitlgK~Lgg-Gy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnPla~A 734 (817)
|.||++..+.............-... +.++||..+. | +.++.++..+++.+.+... ....+.+.++....
T Consensus 189 i~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G-~R~g~~~~~~~~~~~~~~~------~~~~~~~~~~~~q~ 261 (368)
T d1v2da_ 189 ISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATG-YRVGWIVGPKEFMPRLAGM------RQWTSFSAPTPLQA 261 (368)
T ss_dssp EEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGG-GCCEEEECCTTTHHHHHHH------HHHHTSSCCHHHHH
T ss_pred EECHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCCCCHHHHH------HHCCCCCCCCCCCC
T ss_conf 5223333220333333222223344503641455323454-3222111442233200222------10123322333332
Q ss_pred HHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-EEEEEEEEE
Q ss_conf 9999999951967012089999999999999999998739992419755-169999971
Q 003472 735 AAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIELQ 792 (817)
Q Consensus 735 aala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~-Glm~gIel~ 792 (817)
++.+++......+..+.+.+..+...+. +.+.+++++. .-.... |.++-+++.
T Consensus 262 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~----l~~~l~~~g~-~~~~p~g~~~~~~~l~ 315 (368)
T d1v2da_ 262 GVAEALKLARREGFYEALREGYRRRRDL----LAGGLRAMGL-RVYVPEGTYFLMAELP 315 (368)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHH----HHHHHHHTTC-CEECCSBSSEEEEECT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHH----HHHHHHHCCC-EEECCCCEEEEEEECC
T ss_conf 2222233322102578899999986532----2456876694-7866883069999689
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.08 E-value=4.1e-07 Score=59.93 Aligned_cols=300 Identities=13% Similarity=0.034 Sum_probs=156.2
Q ss_pred CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CCEEEEECCHHHHHHHHH
Q ss_conf 1220356522357899899799999999887315558999999679999999983119998-661999078678999999
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGW-ASRAYFSDNGSTAIEIAL 478 (817)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~-~~~v~f~~SGseAvE~AL 478 (817)
.+||+..|.- .+.-++.+.+|+.+.......+..+.+..+....+++.+.+..+... -+.++.+++++++...++
T Consensus 29 ~vi~l~~G~p----~~~~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~ 104 (389)
T d2gb3a1 29 RIHHLNIGQP----DLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSF 104 (389)
T ss_dssp EEEECSSCCC----CSCCCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHH
T ss_pred CEEECCCCCC----CCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 8888989989----999889999999850777778899868999999999998886398765526996255432212221
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999853024410002487764555520899981874478642111248998877677887568765558984222476
Q 003472 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (817)
Q Consensus 479 KlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~ 558 (817)
+... .. ...|+...-+|........ ..+..
T Consensus 105 ~~l~-----~~----------------gd~V~i~~P~y~~~~~~~~-~~g~~---------------------------- 134 (389)
T d2gb3a1 105 AVIA-----NP----------------GDEILVLEPFYANYNAFAK-IAGVK---------------------------- 134 (389)
T ss_dssp HHHC-----CT----------------TCEEEEEESCCTHHHHHHH-HHTCE----------------------------
T ss_pred CCCC-----CC----------------CCEEEEECCCCCCCCCCCC-CCCCC----------------------------
T ss_conf 1223-----57----------------9868870798743343211-36863----------------------------
Q ss_pred CEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEE-EEECCCCCCCCCCCC
Q ss_conf 2121487111100023444445673012210269116899999999999741999888880799-999453346897312
Q 003472 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA-LIIEPVVHAAGGMHM 637 (817)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAA-iIvEPV~qg~gG~~~ 637 (817)
...++..... +.+. + +. +.. ...+++.+ ++.-| +.-.|...
T Consensus 135 ~~~~~~~~~~-----------~~~~--------~---------~~----~~~----~~~~~~~~~~l~nP--~NPtG~~~ 176 (389)
T d2gb3a1 135 LIPVTRRMEE-----------GFAI--------P---------QN----LES----FINERTKGIVLSNP--CNPTGVVY 176 (389)
T ss_dssp EEEEECCGGG-----------TSCC--------C---------TT----GGG----GCCTTEEEEEEESS--CTTTCCCC
T ss_pred CCCCCCCCCC-----------CCCH--------H---------HH----HHH----HCCCCCCEEEECCC--CCCCCCCC
T ss_conf 2123222235-----------5420--------2---------45----554----21567407984798--76644321
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCEE--ECCCCCCC-CCCCCEEEEECHHH-HHHHCC
Q ss_conf 898899999999762399399851100656556310230008999622--00433478-88751189822577-741128
Q 003472 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GVIPLAATLATNAV-FDSFVG 713 (817)
Q Consensus 638 ~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDIi--tlgK~Lgg-Gy~Plsavl~~~~i-~e~~~~ 713 (817)
+.+.+++|.++|++|++++|.||++..+..-+.........-...++ .++|.++. | +-+|.+++..+. ......
T Consensus 177 -s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~G-lRiG~~~~~~~~i~~~~~~ 254 (389)
T d2gb3a1 177 -GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACG-ARVGCLITRNEELISHAMK 254 (389)
T ss_dssp -CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGG-GCCEEEECSCHHHHHHHHH
T ss_pred -HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEEECCCHHHHHHHHH
T ss_conf -08999999842344999999941310023233222222222234433455653345765-6313251100268998766
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE-EEEEEEEEEEE
Q ss_conf 88653000015899878999999999999519670120899999999999999999987399924197-55169999971
Q 003472 714 DSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV-ALGTLCAIELQ 792 (817)
Q Consensus 714 ~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~Vr-G~Glm~gIel~ 792 (817)
.....++.+++...++.+.+.. .+...+.+.+.-+...+ .+.+.+++++.+..+. .-|.++-+++.
T Consensus 255 -------~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~----~~~~~L~~~~~~~~~~p~~g~~~~~~lp 321 (389)
T d2gb3a1 255 -------LAQGRLAPPLLEQIGSVGLLNL--DDSFFDFVRETYRERVE----TVLKKLEEHGLKRFTKPSGAFYITAELP 321 (389)
T ss_dssp -------HHHHSCCCCHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHH----HHHHHHHHTTCCCBCCCSBSSEEEEECS
T ss_pred -------HHHCCCCCCCCCCCCCCCCCCC--CCHHCCCCCCCCCCCCH----HHHHHHHHHCCCCCCCCCCEEEEEEECC
T ss_conf -------4201222232222222223223--20002232333321002----3444454304632369995589999589
Q ss_pred CCCCCCCCCHHHHHHHHHHHC
Q ss_conf 079777711299999999982
Q 003472 793 AAGCNAGYCLIELFLYNFLTT 813 (817)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~l~~ 813 (817)
.. ....|..++++.
T Consensus 322 ~~-------~~~~~~~~ll~e 335 (389)
T d2gb3a1 322 VE-------DAEEFARWMLTD 335 (389)
T ss_dssp SS-------CHHHHHHHHHHS
T ss_pred CC-------CHHHHHHHHHHH
T ss_conf 99-------999999999986
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.03 E-value=9.5e-09 Score=70.32 Aligned_cols=227 Identities=13% Similarity=-0.008 Sum_probs=112.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 99679999999983119998661999078678999999999998530244100024877645555208999818744786
Q 003472 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (817)
Q Consensus 441 ~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t 520 (817)
...+..|+.++++++++ .++++|+.+|++++-.|+-.+. .++.+.|......|.+.
T Consensus 64 ~~~~i~eae~~~A~~~g---a~~a~f~~~Gtt~~n~a~i~a~---------------------~~~gd~Vi~~~~~H~Sv 119 (462)
T d1c4ka2 64 HEGPAVAAEKHAARVYN---ADKTYFVLGGSSNANNTVTSAL---------------------VSNGDLVLFDRNNHKSV 119 (462)
T ss_dssp TBTHHHHHHHHHHHHTT---CSEEEEESSHHHHHHHHHHHHH---------------------CCTTCEEEEETTCCHHH
T ss_pred CCHHHHHHHHHHHHHHC---CCEEEEECCCHHHHHHHHHHHH---------------------CCCCCEEEECCCCHHHH
T ss_conf 87799999999999839---9838997882399999999996---------------------18998588641006879
Q ss_pred CC-CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHH
Q ss_conf 42-111248-9988776778875687655589842224762121487111100023444445673012210269116899
Q 003472 521 LG-AMEAQA-PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (817)
Q Consensus 521 ~g-alslt~-~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (817)
+. +..+.+ ...|..+ ..++ .+......+. ....
T Consensus 120 ~~~~~~l~~~~~~~~~~-----------~~~~------~g~~~~~~~~----------------------------~~~~ 154 (462)
T d1c4ka2 120 YNSALAMAGGRPVYLQT-----------NRNP------YGFIGGIYDS----------------------------DFDE 154 (462)
T ss_dssp HHHHTTTTCCEEEEECE-----------EECT------TCCEEEECGG----------------------------GSCH
T ss_pred HHHHHHHHCCCCEEEEC-----------CCCC------CCCCCCCCHH----------------------------HHHH
T ss_conf 99999980578555326-----------6056------6654788758----------------------------7619
Q ss_pred HHHHHHHHHHHCCCCC-CCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHH
Q ss_conf 9999999997419998-888807999994533468973128988999999997623993998511006565563102300
Q 003472 599 IYSSYISQNLLQNPGL-KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677 (817)
Q Consensus 599 ~~~~~le~~L~~~~~~-~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~ 677 (817)
+.++..+...... ....+...+++..+ .+..|...+ ++++.++|++||+++++||+|..-......+....
T Consensus 155 ---~~~~~~~~~~~~~~~~~~~~~~v~v~~~-~~~~G~~~d----l~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~ 226 (462)
T d1c4ka2 155 ---KKIRELAAKVDPERAKWKRPFRLAVIQL-GTYDGTIYN----AHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSS 226 (462)
T ss_dssp ---HHHHHHTTTSSHHHHTCSCCBSEEEEES-BCTTSEEEC----HHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGC
T ss_pred ---HHHHHHHHHHCHHHHHCCCCCEEEEEEE-EEECCCHHH----HHHHHHHHHHCCCEEEEECHHHCCCCCCCCCCCCH
T ss_conf ---9987465121687662358850699973-000101322----99999999873998999532220422367677425
Q ss_pred --CC----C--CCCEE--ECCCCCCCCCCCCEEEEECHHHHHHHCCC-C--C-CCEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf --08----9--99622--00433478887511898225777411288-8--6-530000158998789999999999995
Q 003472 678 --LG----C--VPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGD-S--K-LKALLHGHSYSAHALGCAAAAKSIKWF 743 (817)
Q Consensus 678 --~g----v--~PDIi--tlgK~LggGy~Plsavl~~~~i~e~~~~~-~--~-~~~~~h~~T~~gnPla~Aaala~L~il 743 (817)
.| . ..|++ ++.|.+++. ..-+.+..++......... . . ........|.+.+...++..-++..++
T Consensus 227 ~~~g~~~~~~~~~D~~~~S~HK~lg~~-~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl~~a~~~~ 305 (462)
T d1c4ka2 227 PLLIDDLGPEDPGIIVVQSVHKQQAGF-SQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQ 305 (462)
T ss_dssp TTSCCCCCTTSCEEEEEECHHHHSSCC-TTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCEEEEECCCCCCCC-CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 430433466678647998367555566-6537998546301542102467888876530266783577899999999988
Q ss_pred CC
Q ss_conf 19
Q 003472 744 KD 745 (817)
Q Consensus 744 e~ 745 (817)
..
T Consensus 306 ~~ 307 (462)
T d1c4ka2 306 EG 307 (462)
T ss_dssp SH
T ss_pred HH
T ss_conf 76
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.02 E-value=8.1e-09 Score=70.77 Aligned_cols=195 Identities=13% Similarity=0.139 Sum_probs=112.3
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCH
Q ss_conf 89379980899981899999999995139997899853488300259999981799997577874345898631011100
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (817)
Q Consensus 37 ~~~~~i~~t~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (817)
||.|-|++.--|+|||++++.|+.+|. ++|++|..+=- . +..++...+.... +. + .
T Consensus 1 ~kvIav~s~KGGvGKTtia~nlA~~la-----~~g~~VlliD~---D-~~~~~~~~~~g~~-~~------~--------~ 56 (232)
T d1hyqa_ 1 VRTITVASGKGGTGKTTITANLGVALA-----QLGHDVTIVDA---D-ITMANLELILGME-GL------P--------V 56 (232)
T ss_dssp CEEEEEEESSSCSCHHHHHHHHHHHHH-----HTTCCEEEEEC---C-CSSSSHHHHTTCC-CC------C--------C
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH-----HCCCCEEEEEC---C-CCCCCHHHHHCCC-CC------C--------C
T ss_conf 979999799999809999999999999-----68998999959---8-9999878981987-67------5--------2
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCCCHHH
Q ss_conf 01137886420247999988756672100100000123567777754433000006424665968898472499999589
Q 003472 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSK 196 (817)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~ 196 (817)
. ..+.. ......++ ... ....+......+..+ ..... ...+.
T Consensus 57 ~-~~~~~------~~~~~~~~-------------------~~~------~~~~~~~~l~~~~~~--~~~~~----~~~~~ 98 (232)
T d1hyqa_ 57 T-LQNVL------AGEARIDE-------------------AIY------VGPGGVKVVPAGVSL--EGLRK----ANPEK 98 (232)
T ss_dssp C-HHHHH------TTSSCGGG-------------------GCE------ECGGGCEEEECCSCH--HHHHH----HCHHH
T ss_pred H-HHHHH------CCCCCCCC-------------------CCC------CCCCCCEEEEEECCC--CCCCC----CCHHH
T ss_conf 1-34342------25421121-------------------123------578620167640221--23312----21356
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999851576531101257777899958998778789997034675317999999975998829999999999995
Q 003472 197 VIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL 276 (817)
Q Consensus 197 i~~~~~~~~~~~~~~~~~~~~~~~~d~~iiEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~ 276 (817)
+.+.+..+... +|++||+...++.. ........ --.+++|+......+.++.-....++.
T Consensus 99 l~~~l~~l~~~-------------~D~viiD~~~~~~~------~~~~~l~~-ad~v~~v~~~~~~~~~~~~~~~~~~~~ 158 (232)
T d1hyqa_ 99 LEDVLTQIMES-------------TDILLLDAPAGLER------SAVIAIAA-AQELLLVVNPEISSITDGLKTKIVAER 158 (232)
T ss_dssp HHHHHHHHHHT-------------CSEEEEECCSSSSH------HHHHHHHH-SSEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-------------CCEEEECCCCCCCC------HHHHHHHH-HHEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 77888877523-------------64353033222220------25777654-230322022221102456666665431
Q ss_pred CCCCEEEEEECCCCCCCH----HHHHHHHCCCCCEEE-CCCCCC
Q ss_conf 799289999915899997----989985308996986-599999
Q 003472 277 RGYDVVAVVFEDHGLVNE----VPLMSYLRNRVPVLV-LPPLPQ 315 (817)
Q Consensus 277 ~~~~v~gvi~N~~~~~~~----~~l~~~~~~~~pvlg-ip~~~~ 315 (817)
.+.++.|+|+|+...... +.+++.+ +.|+++ ||+.+.
T Consensus 159 ~~~~~~~iv~N~~~~~~~~~~~~~i~~~~--~~~~~~~IP~d~~ 200 (232)
T d1hyqa_ 159 LGTKVLGVVVNRITTLGIEMAKNEIEAIL--EAKVIGLIPEDPE 200 (232)
T ss_dssp HTCEEEEEEEEEECTTTHHHHHHHHHHHT--TSCEEEEEECCHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHC--CCEEEEECCCCHH
T ss_conf 01112222233344344320135677645--9748978889989
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.01 E-value=1.5e-08 Score=68.97 Aligned_cols=304 Identities=14% Similarity=0.075 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHCCC----CCCCCCCCHHHHHHHHHHHHHCCCC--CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7999999998873155----5899999967999999998311999--866199907867899999999999853024410
Q 003472 419 IELARDMGYTAARFGH----VMFPENVYEPALECAELLLQGVGKG--WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVL 492 (817)
Q Consensus 419 p~I~~Ai~~q~~~~~~----~~~~~~~~~~~~eLae~L~~~~~~~--~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~ 492 (817)
+.+.+++++.++.... +....+.-+....+++.+.+..+.. ..+.+++++++++|...++... . ..
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~----~-~~--- 127 (420)
T d1vp4a_ 56 KELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLF----L-DD--- 127 (420)
T ss_dssp HHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHH----C-CT---
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHEEECCCHHHHHHHHHHHH----H-CC---
T ss_conf 999999999984277545678998678999999999999984999898789584442046677888753----0-24---
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCC
Q ss_conf 00248776455552089998187447864211124899887767788756876555898422247621214871111000
Q 003472 493 VDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (817)
Q Consensus 493 ~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~ 572 (817)
...|+..+-+|..-... ....+.. ...++....
T Consensus 128 -------------Gd~Vlv~~P~y~~~~~~-~~~~g~~----------------------------~~~~~~~~~----- 160 (420)
T d1vp4a_ 128 -------------ESYCVLDDPAYLGAINA-FRQYLAN----------------------------FVVVPLEDD----- 160 (420)
T ss_dssp -------------TCEEEEEESCCHHHHHH-HHTTTCE----------------------------EEEEEEETT-----
T ss_pred -------------CCCCCCCCCCCCCHHHH-HHHHHHH----------------------------CCCCCCCCC-----
T ss_conf -------------44233444334203578-9887531----------------------------123334544-----
Q ss_pred CCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 23444445673012210269116899999999999741999888880799999453346897312898899999999762
Q 003472 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN 652 (817)
Q Consensus 573 ~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~ 652 (817)
+.+.+... ..+....... ........+++-+- +.-.|.. .+...++++.++|++
T Consensus 161 -----------------~~~~~~l~----~~~~~~~~~~---~~~~~~~~~~~~~p-~NPtG~~-~s~~~~~~i~~~a~~ 214 (420)
T d1vp4a_ 161 -----------------GMDLNVLE----RKLSEFDKNG---KIKQVKFIYVVSNF-HNPAGVT-TSLEKRKALVEIAEK 214 (420)
T ss_dssp -----------------EECHHHHH----HHHHHHHHTT---CGGGEEEEEEECSS-CTTTCCC-CCHHHHHHHHHHHHH
T ss_pred -----------------CCCCCHHH----HHHHHHHHHH---HCCCCCEEEEECCC-CCCCCHH-HHHHHHHHHHHHHHC
T ss_conf -----------------66631122----3344567876---32566245671588-8765212-335455334443220
Q ss_pred CCCCEEEEEEEECCCCCCCCCHHHHCCCCCCEE----ECCCCCCCCCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCC
Q ss_conf 399399851100656556310230008999622----0043347888751189822577741128886530000158998
Q 003472 653 RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA----CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSA 728 (817)
Q Consensus 653 ~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDIi----tlgK~LggGy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~g 728 (817)
|++++|.||+...|.-.|...........|+.+ .++|....| +-+|.+++.+++++.+... ....+.+.
T Consensus 215 ~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~~G-~RiG~~~~~~~~i~~l~~~------~~~~~~~~ 287 (420)
T d1vp4a_ 215 YDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPG-LRIGMVAGSKEFIRKIVQA------KQSADLCS 287 (420)
T ss_dssp TTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGG-GCEEEEECCHHHHHHHHHH------HHHHHSSC
T ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC-CCCCCCCCCCHHHHHHHHH------HHHCCCCC
T ss_conf 3334443321330024576432222234665315873024222354-3323124553022233433------22002467
Q ss_pred CHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-EEEEEEEEECCCCCCCCCHHHHHH
Q ss_conf 7899999999999951967012089999999999999999998739992419755-169999971079777711299999
Q 003472 729 HALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYCLIELFL 807 (817)
Q Consensus 729 nPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~-Glm~gIel~~~~~~~~~~~~~~~~ 807 (817)
+...-+++...++--...+...+..+..+.....+.+.+.+.+...+.+.-+... |+++-+++.+. ..+ ..+.
T Consensus 288 ~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg~f~~~~~~~~--~d~----~~~~ 361 (420)
T d1vp4a_ 288 PAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEG--FDT----WEMF 361 (420)
T ss_dssp CHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTT--CCT----TTTH
T ss_pred CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEECCCCEEEEEEECCCC--CCH----HHHH
T ss_conf 5466555442123454321103678886430112114666652358872781699237999988999--999----9999
Q ss_pred HHHHHCCCC
Q ss_conf 999982989
Q 003472 808 YNFLTTGMH 816 (817)
Q Consensus 808 ~~~l~~G~~ 816 (817)
..+.++||.
T Consensus 362 ~~l~~~gV~ 370 (420)
T d1vp4a_ 362 EYAKRKKVF 370 (420)
T ss_dssp HHHHHHTEE
T ss_pred HHHHHCCEE
T ss_conf 999979969
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=2.2e-07 Score=61.66 Aligned_cols=213 Identities=13% Similarity=0.032 Sum_probs=124.0
Q ss_pred CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCCCCCHH-------HHHHHHHHHHHCCCCCCCEEEEECCHH
Q ss_conf 12203565223578998997999999998873155-5899999967-------999999998311999866199907867
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEP-------ALECAELLLQGVGKGWASRAYFSDNGS 471 (817)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~-~~~~~~~~~~-------~~eLae~L~~~~~~~~~~~v~f~~SGs 471 (817)
-|+|..+ -|-- +|.|.+|+.+.+.+... ....+..+.. ..++-++++++++.. .+.+.|+++++
T Consensus 4 iYlD~aa------~~p~-~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~-~~~I~~~~~~t 75 (391)
T d1p3wa_ 4 IYLDYSA------TTPV-DPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGAD-PREIVFTSGAT 75 (391)
T ss_dssp EECBTTT------CCCC-CHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESSHH
T ss_pred EEEECCC------CCCC-CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEEEECCHH
T ss_conf 9853742------2679-99999999999986466578731665999999999999999999973999-78199979889
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999999999985302441000248776455552089998187447864211124899887767788756876555898
Q 003472 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (817)
Q Consensus 472 eAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p 551 (817)
++...++... .......| ..||+.+..|++.. ......... |.
T Consensus 76 ~~l~~~~~~~-~~~~~~~g----------------d~Vv~~~~~~~s~~-~~~~~~~~~--------------G~----- 118 (391)
T d1p3wa_ 76 ESDNLAIKGA-ANFYQKKG----------------KHIITSKTEHKAVL-DTCRQLERE--------------GF----- 118 (391)
T ss_dssp HHHHHHHHHH-HHHHGGGC----------------CEEEEETTSCHHHH-HHHHHHHHT--------------TC-----
T ss_pred HHHHHHHHHH-HHHHCCCC----------------CEEEEECCCCCHHH-HHHHHHHHC--------------CC-----
T ss_conf 9999999642-35305799----------------88999246541389-999999975--------------98-----
Q ss_pred CCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 42224762121487111100023444445673012210269116899999999999741999888880799999453346
Q 003472 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (817)
Q Consensus 552 ~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg 631 (817)
.+..++..... .-| .+.+++.+. +++.+|++.-+ +.
T Consensus 119 ------~v~~v~~~~~~-----------~~d------------------~~~~~~~i~--------~~T~lv~is~~-~n 154 (391)
T d1p3wa_ 119 ------EVTYLAPQRNG-----------IID------------------LKELEAAMR--------DDTILVSIMHV-NN 154 (391)
T ss_dssp ------EEEEECCCTTS-----------CCC------------------HHHHHHHCC--------TTEEEEECCSB-CT
T ss_pred ------EEEEECCCCCC-----------EEC------------------HHHHHHHCC--------CCCEEEEEECC-CC
T ss_conf ------89996788787-----------276------------------899997579--------99489999789-78
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCEEEC--CCCCCCCCCCCEEEEECHHHHH
Q ss_conf 89731289889999999976239939985110065655631023000899962200--4334788875118982257774
Q 003472 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFD 709 (817)
Q Consensus 632 ~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDIitl--gK~LggGy~Plsavl~~~~i~e 709 (817)
..|.+.+ +++|.++|+++|+++++|.+|+ +|-.- . +.....+|++++ -|.+| + .-++.+.++++...
T Consensus 155 ~tG~~~~----~~~I~~~~~~~~~~~ivD~~~~-~g~~~--~--d~~~~~~D~~~~s~~k~~g-~-~g~g~~~~~~~~~~ 223 (391)
T d1p3wa_ 155 EIGVVQD----IAAIGEMCRARGIIYHVDATQS-VGKLP--I--DLSQLKVDLMSFSGHKIYG-P-KGIGALYVRRKPRV 223 (391)
T ss_dssp TTCCBCC----HHHHHHHHHHHTCEEEEECTTT-BTTBC--C--CTTTSCCSEEEEESTTTTS-C-SSCEEEEECBTTBC
T ss_pred CCEEECC----HHHHHHHHCCCCCEEEEEECCC-CCCCC--C--CCHHCCCCCCCCCCCCCCC-C-CCEEEEEEECCHHC
T ss_conf 8810777----8999998555895799730122-57756--4--2021046532122310057-8-85599998550211
Q ss_pred HHC
Q ss_conf 112
Q 003472 710 SFV 712 (817)
Q Consensus 710 ~~~ 712 (817)
...
T Consensus 224 ~~~ 226 (391)
T d1p3wa_ 224 RIE 226 (391)
T ss_dssp CCC
T ss_pred CCC
T ss_conf 568
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.00 E-value=1.9e-08 Score=68.35 Aligned_cols=197 Identities=16% Similarity=0.164 Sum_probs=110.2
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCH
Q ss_conf 89379980899981899999999995139997899853488300259999981799997577874345898631011100
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (817)
Q Consensus 37 ~~~~~i~~t~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (817)
.|.|-|++...|+|||++++.|+.+|. ++|++|..+-. ... .++.. ..+ +.. +.+
T Consensus 2 ~~vIav~~~kGGvGKTtia~nLA~~la-----~~g~~VlliD~---D~~-~~~l~---~~l-~~~---~~~--------- 56 (237)
T d1g3qa_ 2 GRIISIVSGKGGTGKTTVTANLSVALG-----DRGRKVLAVDG---DLT-MANLS---LVL-GVD---DPD--------- 56 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHH-----HTTCCEEEEEC---CTT-SCCHH---HHT-TCC---CCS---------
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHH-----HCCCCEEEEEC---CCC-CCCHH---HHH-CCC---CCC---------
T ss_conf 829999899998819999999999999-----68998999949---899-99746---774-888---865---------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCCCHHH
Q ss_conf 01137886420247999988756672100100000123567777754433000006424665968898472499999589
Q 003472 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSK 196 (817)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~ 196 (817)
..+.+....+........ .....+.+....+. ....... .....
T Consensus 57 -------------------------~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~----~~~~~ 100 (237)
T d1g3qa_ 57 -------------------------VTLHDVLAGEANVEDAIY-----MTQFDNVYVLPGAV--DWEHVLK----ADPRK 100 (237)
T ss_dssp -------------------------SCHHHHHTTSSCGGGGCE-----ECSSTTEEEECCCC--SHHHHHH----CCGGG
T ss_pred -------------------------CCHHHHCCCCCCHHHHHH-----CCCCCCCCCCCCCC--CHHHHHH----HHHHH
T ss_conf -------------------------412333168876778510-----01223433565322--2145554----22378
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999851576531101257777899958998778789997034675317999999975998829999999999995
Q 003472 197 VIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL 276 (817)
Q Consensus 197 i~~~~~~~~~~~~~~~~~~~~~~~~d~~iiEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~ 276 (817)
+.+.+..+.+ .+|++||++.+++... ....... ---+++|+.....++.++....+.+++
T Consensus 101 ~~~~~~~l~~-------------~~d~IiiD~~~~~~~~------~~~~l~~-aD~viiv~~~~~~s~~~~~~~~~~~~~ 160 (237)
T d1g3qa_ 101 LPEVIKSLKD-------------KFDFILIDCPAGLQLD------AMSAMLS-GEEALLVTNPEISCLTDTMKVGIVLKK 160 (237)
T ss_dssp HHHHHHTTGG-------------GCSEEEEECCSSSSHH------HHHHHTT-CSEEEEEECSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------------CCCEEEECCCCCCCCC------CHHHHHH-HHCCCCCCCCCCEECCHHHHHHHHHHH
T ss_conf 9999999874-------------2898998043321111------0012222-210343432100001103677777753
Q ss_pred CCCCEEEEEECCCCC----CCHHHHHHHHCCCCCEEE-CCCCCCC
Q ss_conf 799289999915899----997989985308996986-5999999
Q 003472 277 RGYDVVAVVFEDHGL----VNEVPLMSYLRNRVPVLV-LPPLPQD 316 (817)
Q Consensus 277 ~~~~v~gvi~N~~~~----~~~~~l~~~~~~~~pvlg-ip~~~~~ 316 (817)
.++++.|+|+|++.. ......++++ ++|+++ ||+.+.+
T Consensus 161 ~~~~~~giv~N~~~~~~~~~~~~~~~~~~--~~~~~~~IP~d~~v 203 (237)
T d1g3qa_ 161 AGLAILGFVLNRYGRSDRDIPPEAAEDVM--EVPLLAVIPEDPAI 203 (237)
T ss_dssp TTCEEEEEEEEEETSCTTCCCHHHHHHHH--CSCEEEEEECCHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHC--CCEEEEEECCCHHH
T ss_conf 10234432101356532002068888633--85279994897899
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=98.95 E-value=1.4e-06 Score=56.63 Aligned_cols=308 Identities=13% Similarity=0.034 Sum_probs=158.5
Q ss_pred CHHHHHHHHHHHHHCC--C--CCCCCCCCHHHHHHHHHHHHHCCCCC--CCEEEEECCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9799999999887315--5--58999999679999999983119998--6619990786789999999999985302441
Q 003472 418 QIELARDMGYTAARFG--H--VMFPENVYEPALECAELLLQGVGKGW--ASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (817)
Q Consensus 418 ~p~I~~Ai~~q~~~~~--~--~~~~~~~~~~~~eLae~L~~~~~~~~--~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~ 491 (817)
.+.+.+|+.+.+.... . +....+..+....+|+++.+..+... .+.++.++++++|...++.... ..
T Consensus 41 p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~-----~~-- 113 (418)
T d2r5ea1 41 PKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHV-----DE-- 113 (418)
T ss_dssp CHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC-----CT--
T ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCC-----CC--
T ss_conf 99999999999838996676789987889999999999999859999964158991797332110022201-----33--
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHC
Q ss_conf 00024877645555208999818744786421112489988776778875687655589842224762121487111100
Q 003472 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (817)
Q Consensus 492 ~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~ 571 (817)
...|++.+-+|.+............ ..++......
T Consensus 114 --------------gd~vlv~~P~y~~~~~~~~~~g~~~-----------------------------~~v~~~~~~~-- 148 (418)
T d2r5ea1 114 --------------GDEVIIIEPFFDCYEPMVKAAGGIP-----------------------------RFIPLKPNKT-- 148 (418)
T ss_dssp --------------TCEEEEEESCCTTHHHHHHHTTCEE-----------------------------EEEECEESCC--
T ss_pred --------------CCCEECCCCCCCHHHHHHHHCCCEE-----------------------------EEEEECCCCC--
T ss_conf --------------3320012234500467898749869-----------------------------9997214556--
Q ss_pred CCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 02344444567301221026911689999999999974199988888079999945334689731289889999999976
Q 003472 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (817)
Q Consensus 572 ~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~ 651 (817)
. ....+..+ ..+ .+.++... .....++++-+- +.-.|.+. +++.+++|.++|+
T Consensus 149 -----~--~~~~~~~~--~~~--------~~~~~~~~--------~~~~~~~~i~~p-~NPtG~~~-s~e~~~~l~~~a~ 201 (418)
T d2r5ea1 149 -----G--GTISSADW--VLD--------NNELEALF--------NEKTKMIIINTP-HNPLGKVM-DRAELEVVANLCK 201 (418)
T ss_dssp -----S--SCEEGGGE--ECC--------HHHHHHHC--------CTTEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHH
T ss_pred -----C--CCHHHHHH--HHH--------HHHHHHHH--------HCCCCCEECCCC-CCCCCCCC-CHHHHHHHHHHHH
T ss_conf -----6--63055666--665--------88776654--------114441241786-86544333-1888777753442
Q ss_pred HCCCCEEEEEEEECCCCCCCC--CHHHHCCCCCC---EEECCCCCC-CCCCCCEEEEECHHHHHHHCCCCCCCEEECCCC
Q ss_conf 239939985110065655631--02300089996---220043347-888751189822577741128886530000158
Q 003472 652 NRKIPVIFDEVFTGFWRLGVE--TTADLLGCVPD---IACYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHS 725 (817)
Q Consensus 652 ~~gilLI~DEV~TGfGRtG~~--~a~e~~gv~PD---IitlgK~Lg-gGy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T 725 (817)
+|++++|.||++..|..-+.. ......+..+- +..+||.++ .| +-+|.+++.+++.+.+... ....+
T Consensus 202 ~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pG-lRiG~~~~~~~~i~~~~~~------~~~~~ 274 (418)
T d2r5ea1 202 KWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTG-WKIGWAYGPEALLKNLQMV------HQNCV 274 (418)
T ss_dssp HHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGG-GCCEEEESCHHHHHHHHHH------HTTTT
T ss_pred CCCEEEECCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC-CCCCCCCCCCHHHHHHHHC------CCCCC
T ss_conf 1781221021021201578765310036555431456655775426887-6445323431133444211------22233
Q ss_pred CCCCHHHHHHHHHHHHHH-CC----CCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCC-
Q ss_conf 998789999999999995-19----670120899999999999999999987399924197551699999710797777-
Q 003472 726 YSAHALGCAAAAKSIKWF-KD----PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG- 799 (817)
Q Consensus 726 ~~gnPla~Aaala~L~il-e~----~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~Glm~gIel~~~~~~~~- 799 (817)
++.+.....++.+.+.-- .. ++....+.+.-+..++. +.+.+++.......-.-|.++-+++..-.....
T Consensus 275 ~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~----l~~~L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~ 350 (418)
T d2r5ea1 275 YTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDY----MASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDL 350 (418)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHH----HHHHHHHTTCEEEECSBSSEEEEECGGGSTTCCG
T ss_pred CCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH----HHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCC
T ss_conf 334562021012223322233445325678888898876466----7766764287013798124997872235651110
Q ss_pred -----CCHHHHHHHHHHH-CCC
Q ss_conf -----1129999999998-298
Q 003472 800 -----YCLIELFLYNFLT-TGM 815 (817)
Q Consensus 800 -----~~~~~~~~~~~l~-~G~ 815 (817)
......|...+++ +||
T Consensus 351 ~~~~~~~~~~~~~~~ll~~~gV 372 (418)
T d2r5ea1 351 TQETDARKDYRFTKWMTKSVGL 372 (418)
T ss_dssp GGCCCSSHHHHHHHHHHHHHSE
T ss_pred HHCCCCCCHHHHHHHHHHHCCE
T ss_conf 1203446789999999987899
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=98.93 E-value=1.5e-06 Score=56.37 Aligned_cols=282 Identities=11% Similarity=0.081 Sum_probs=134.6
Q ss_pred CCCHHHHHHHHHHHHHCCCC---CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 99967999999998311999---866199907867899999999999853024410002487764555520899981874
Q 003472 440 NVYEPALECAELLLQGVGKG---WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSY 516 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~---~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsy 516 (817)
+..+....+|+.+.+..+.. .-+.+++++++++|++.+++.. ...| ..|+...-+|
T Consensus 84 G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l-----~~~G----------------d~Vlv~~P~y 142 (428)
T d1iaya_ 84 GLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCL-----ADPG----------------DAFLVPSPYY 142 (428)
T ss_dssp CCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHH-----CCTT----------------CEEEEESSCC
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHEEECCCHHHHHHHHHHHH-----CCCC----------------CEEEECCCCC
T ss_conf 529999999999999859999987650998688999999999984-----7997----------------9899866871
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHH
Q ss_conf 47864211124899887767788756876555898422247621214871111000234444456730122102691168
Q 003472 517 HGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDL 596 (817)
Q Consensus 517 HG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~ 596 (817)
.+.... +.... +...++++-.. . .-| .-+.+..
T Consensus 143 ~~~~~~-~~~~~-----------------------------g~~~v~v~~~~------------~---~~~--~~d~~~~ 175 (428)
T d1iaya_ 143 PAFNRD-LRWRT-----------------------------GVQLIPIHCES------------S---NNF--KITSKAV 175 (428)
T ss_dssp TTHHHH-TTTTT-----------------------------CCEEEEECCCT------------T---TTT--CCCHHHH
T ss_pred HHHHHH-HHHHC-----------------------------CCEEEEEECCC------------C---CCC--CCCCCCC
T ss_conf 378999-99855-----------------------------98578861233------------3---232--3454211
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCH--
Q ss_conf 999999999997419998888807999994533468973128988999999997623993998511006565563102--
Q 003472 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-- 674 (817)
Q Consensus 597 ~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a-- 674 (817)
...++.... .++...+.++.-| +.-.|... +...++++.++|++||+++|.||++..+---|.-+.
T Consensus 176 ----~~~~~~~~~-----~~~~~~~~~l~nP--~NPtG~~~-s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~ 243 (428)
T d1iaya_ 176 ----KEAYENAQK-----SNIKVKGLILTNP--SNPLGTTL-DKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSI 243 (428)
T ss_dssp ----HHHHHHHHH-----TTCCEEEEEEESS--CTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCH
T ss_pred ----CCHHHHHHC-----CCCCCEEEEECCC--CCCCCCCC-CCCCCCHHHEEECCCCEEEEECCCCCCCCCCCCCCCCC
T ss_conf ----100223321-----6877408997067--77642233-22310011012025757999536644434576555200
Q ss_pred HHHC------CCCCC----EEECCCCCC-CCCCCCEEEEE-CHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 3000------89996----220043347-88875118982-257774112888653000015899878999999999999
Q 003472 675 ADLL------GCVPD----IACYGKLLT-GGVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKW 742 (817)
Q Consensus 675 ~e~~------gv~PD----IitlgK~Lg-gGy~Plsavl~-~~~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~i 742 (817)
.+.. ...+| +-.+||.++ .| +-+|.+.+ .+.+.+.+.. ..++...+.....+.++ .
T Consensus 244 ~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G-lRiG~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~a--~ 311 (428)
T d1iaya_ 244 AEILDEQEMTYCNKDLVHIVYSLSKDMGLPG-FRVGIIYSFNDDVVNCARK---------MSSFGLVSTQTQYFLAA--M 311 (428)
T ss_dssp HHHHTSGGGTTSCTTSEEEEEESTTTSSCGG-GCEEEEEESCHHHHHHHHH---------HHTTSCCCHHHHHHHHH--H
T ss_pred CCCCCHHHCCCCCCCEEEEEECCCCCCCCCC-CCCCCCCCCCCCHHHHHHH---------HHCCCCCCCCCCCCHHH--H
T ss_conf 2365301101234660899935887554777-5554433213200111233---------31222333322210345--5
Q ss_pred HCCCCCHHC-HHHHHHHHHHHHHHHHHHHHHCCCC-CCEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHH-CCC
Q ss_conf 519670120-8999999999999999999873999-241975516999997107977771129999999998-298
Q 003472 743 FKDPQTNHN-IIPERRILRELWDLELIQQISSHRT-VQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLT-TGM 815 (817)
Q Consensus 743 le~~~~~~~-l~~~~~~l~~~l~~~l~~~~~~~p~-I~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~-~G~ 815 (817)
+..++..++ +.++.+.+.+. .+.+.+.++...+ +.. ..-|+++-+++...-.....+....+...+++ .||
T Consensus 312 l~~~~~~~~~~~~~~~~l~~r-~~~~~~~L~~~gi~~~~-p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV 385 (428)
T d1iaya_ 312 LSDEKFVDNFLRESAMRLGKR-HKHFTNGLEVVGIKCLK-NNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKL 385 (428)
T ss_dssp TTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTTCCBCC-CSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCE
T ss_pred HHHHCCCCCCCCCCCCCCCHH-HHHHHHHHHHCCCEEEC-CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCE
T ss_conf 554123322223333221014-89999998757978716-895359989884100557777899999999985999
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=98.93 E-value=6.2e-07 Score=58.80 Aligned_cols=221 Identities=14% Similarity=0.056 Sum_probs=125.9
Q ss_pred CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHCCCCC-CCEEEEECCHHHHHHHH
Q ss_conf 12203565223578998997999999998873155-58999999679999999983119998-66199907867899999
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKGW-ASRAYFSDNGSTAIEIA 477 (817)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~~~~~-~~~v~f~~SGseAvE~A 477 (817)
..||+..|.- ++..++.+.+++.+.+....+ +....+..+....+++.+....+... .+.+++++++++|...+
T Consensus 29 ~vI~l~~G~p----~~~~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~ 104 (375)
T d1o4sa_ 29 DVINLTAGEP----DFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNA 104 (375)
T ss_dssp CCEECCCSSC----SSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHH
T ss_pred CEEECCCCCC----CCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 8589989588----997889999999999855876889986789999999864332156554333233467289999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999985302441000248776455552089998187447864211124899887767788756876555898422247
Q 003472 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (817)
Q Consensus 478 LKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~ 557 (817)
++... ..| ..|+..+-+|....... ...+..
T Consensus 105 ~~~l~-----~~g----------------d~vlv~~P~y~~~~~~~-~~~~~~--------------------------- 135 (375)
T d1o4sa_ 105 FMALL-----DPG----------------DEVIVFSPVWVSYIPQI-ILAGGT--------------------------- 135 (375)
T ss_dssp HHHHC-----CTT----------------CEEEEEESCCTTHHHHH-HHTTCE---------------------------
T ss_pred HHHHH-----CCC----------------CEEEECCCCCCCCHHHH-HCCCCC---------------------------
T ss_conf 99981-----899----------------98998258654310232-112222---------------------------
Q ss_pred CCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 62121487111100023444445673012210269116899999999999741999888880799999453346897312
Q 003472 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (817)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~ 637 (817)
...++..... +. ..+ .+.++.. ........++.-| +.=.|...
T Consensus 136 -~~~~~~~~~~------------~~-------~~~--------~~~~~~~-------~~~~~~~~~l~nP--~NPTG~~~ 178 (375)
T d1o4sa_ 136 -VNVVETFMSK------------NF-------QPS--------LEEVEGL-------LVGKTKAVLINSP--NNPTGVVY 178 (375)
T ss_dssp -EEEEECCGGG------------TT-------CCC--------HHHHHHT-------CCTTEEEEEEESS--CTTTCCCC
T ss_pred -CCCCCCCCCC------------CC-------CCH--------HHHHHHH-------HCCCCCEEEEECC--CCCCCCCC
T ss_conf -2233344332------------35-------613--------6777775-------2357637998189--98855779
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHH-HHCCC---CCCEEECCCCCC-CCCCCCEEEEECHHHHHHHC
Q ss_conf 89889999999976239939985110065655631023-00089---996220043347-88875118982257774112
Q 003472 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGC---VPDIACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (817)
Q Consensus 638 ~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~-e~~gv---~PDIitlgK~Lg-gGy~Plsavl~~~~i~e~~~ 712 (817)
+...+++|.++|++|++.+|.||++.-+.-.+..... ...+. .--+-++||.++ .| +-+|.+++.+++.+.+.
T Consensus 179 -s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G-~R~G~~~~~~~~~~~~~ 256 (375)
T d1o4sa_ 179 -RREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTG-WRVGYLISSEKVATAVS 256 (375)
T ss_dssp -CHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHCCCCEEHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCCCCC-CCCCCCCCCCCCHHHHH
T ss_conf -9999999998688709812467400300133333211235577897899940514205886-64454323333101223
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=4e-08 Score=66.34 Aligned_cols=275 Identities=12% Similarity=0.018 Sum_probs=141.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 97999999998873155589999996799999999831199986619990786789999999999985302441000248
Q 003472 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (817)
Q Consensus 418 ~p~I~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~ 497 (817)
+|+|.+|+..+. ..| ...-..+...+..+.|.++++-+....++|+.||++|+++++....
T Consensus 31 ~~~Vl~am~~~~--i~H--Rs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~--------------- 91 (388)
T d1h0ca_ 31 PPRIMAAGGLQM--IGS--MSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVL--------------- 91 (388)
T ss_dssp CHHHHHHHTCCC--CCT--TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC---------------
T ss_pred CHHHHHHHCCCC--CCC--CCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHH---------------
T ss_conf 999999757688--887--8989999999999999999689998389986948999999999861---------------
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCC
Q ss_conf 77645555208999818744786421112489988776778875687655589842224762121487111100023444
Q 003472 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (817)
Q Consensus 498 ~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~ 577 (817)
....+++....++++............. ...+..+...
T Consensus 92 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~--------- 129 (388)
T d1h0ca_ 92 ------EPGDSFLVGANGIWGQRAVDIGERIGAR---------------------------VHPMTKDPGG--------- 129 (388)
T ss_dssp ------CSSCCEEECBSSHHHHHHHHHHHHHC-----------------------------CBCCBCCTTC---------
T ss_pred ------CCCCCEEEECCCCEEEEECCCCCCCCCC---------------------------CCCCCCCCCC---------
T ss_conf ------2687402311343010000122111111---------------------------3333358765---------
Q ss_pred CCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 44567301221026911689999999999974199988888079999945334689731289889999999976239939
Q 003472 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (817)
Q Consensus 578 ~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilL 657 (817)
..+ ...++..+.. .+...+.+--+ ....|.+.| ++++.++|+++|+++
T Consensus 130 ------------~~~--------~~~~~~~~~~-------~~~~~v~~~~~-~n~tG~i~p----i~~i~~~~~~~g~~~ 177 (388)
T d1h0ca_ 130 ------------HYT--------LQEVEEGLAQ-------HKPVLLFLTHG-ESSTGVLQP----LDGFGELCHRYKCLL 177 (388)
T ss_dssp ------------CCC--------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHTTTCEE
T ss_pred ------------CCC--------HHHHHHHHCC-------CCCCEEEEEEE-EECCCCCCC----HHHHHHHHHCCCCCC
T ss_conf ------------521--------6899987616-------97113787420-001444567----999988764025441
Q ss_pred EEEEEEECCCCCCCCCHHHHCCCCCCEEECC--CCCCCCCCCCEEEEECHHHHHHHCCCCC-CCE---------------
Q ss_conf 9851100656556310230008999622004--3347888751189822577741128886-530---------------
Q 003472 658 IFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSK-LKA--------------- 719 (817)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv~PDIitlg--K~LggGy~Plsavl~~~~i~e~~~~~~~-~~~--------------- 719 (817)
++|.+|+ +|.. . .+......|+++++ |.+++- .-++.+..++...+....... ...
T Consensus 178 ~vD~~qs-~g~~--~--~d~~~~~~D~~~~s~~K~~~gp-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (388)
T d1h0ca_ 178 LVDSVAS-LGGT--P--LYMDRQGIDILYSGSQKALNAP-PGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCD 251 (388)
T ss_dssp EEECTTT-TTTS--C--CCTTTTTCSEEEEESSSTTCCC-TTCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCS
T ss_pred EECCCCC-CCCC--C--CCCCCCCCCEECCCCCCCCCCC-CCEEEEEECHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 0011123-4433--2--1123456512203333214689-7267775007888754430466643221200023443210
Q ss_pred -EECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCE--EEEEEEEEEEEEECC
Q ss_conf -000158998789999999999995196701208999999999999999999873999241--975516999997107
Q 003472 720 -LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR--VVALGTLCAIELQAA 794 (817)
Q Consensus 720 -~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~--VrG~Glm~gIel~~~ 794 (817)
....++...+.....+..++++.+.+.+. ++...+...+..++.+.+... .-...+.+ .| ...+..+.+.+.
T Consensus 252 ~~~~~~~~t~~~~~~~~~~~al~~~~~~g~-~~~~~~~~~l~~~l~~~~~~~-g~~~~~~~~~~r-s~~i~~~~~p~~ 326 (388)
T d1h0ca_ 252 DQPRMYHHTIPVISLYSLRESLALIAEQGL-ENSWRQHREAAAYLHGRLQAL-GLQLFVKDPALR-LPTVTTVAVPAG 326 (388)
T ss_dssp SSCCCCCSCCCHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGB-CTTEEEEECCTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHC-CCCCCCCCHHHC-CCEEEEEECCCC
T ss_conf 233443556657999988878999997166-531000121047778777633-753126887773-880899988999
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=98.92 E-value=2.2e-07 Score=61.63 Aligned_cols=249 Identities=14% Similarity=0.086 Sum_probs=149.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 99967999999998311999866199907867899999999999853024410002487764555520899981874478
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++....|+++|+++-+ .+.++.++||--|+-+++-... +.| ..||+.+..|+|.
T Consensus 56 ~~nPT~~~LE~~la~LEg---~~~a~~~~SGmaAi~~~l~~l~-----~~G----------------d~vl~~~~~Yg~t 111 (392)
T d1gc0a_ 56 ISNPTLNLLEARMASLEG---GEAGLALASGMGAITSTLWTLL-----RPG----------------DEVLLGNTLYGCT 111 (392)
T ss_dssp -CCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHC-----CTT----------------CEEEEESSCCSHH
T ss_pred CCCHHHHHHHHHHHHHHC---CCCEEEHHHHHHHHHHHHHHHC-----CCC----------------CEEECCCCCCHHH
T ss_conf 988689999999999839---9511101447899999987523-----699----------------8000121111014
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHH
Q ss_conf 64211124899887767788756876555898422247621214871111000234444456730122102691168999
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (817)
....-..- +..|. . +.|.|. .|
T Consensus 112 ~~l~~~~~--------------~~~Gi--------------~----------------~~~~d~-------~d------- 133 (392)
T d1gc0a_ 112 FAFLHHGI--------------GEFGV--------------K----------------LRHVDM-------AD------- 133 (392)
T ss_dssp HHHHHHTG--------------GGGTC--------------E----------------EEEECT-------TC-------
T ss_pred HHHHHHHH--------------CCCCC--------------C----------------CCCCCC-------CC-------
T ss_conf 55643210--------------24774--------------2----------------245786-------67-------
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCC
Q ss_conf 99999999741999888880799999453346897312898899999999762399399851100656556310230008
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.++ .+...|++|.. ..-..-++. ++.+.++|+++|+++++|-+.+ ....+.-+.
T Consensus 134 -~~~~~~ai~--------~~t~lv~~Esp-~NP~l~v~D----i~~i~~ia~~~g~~~vvDnT~a------tP~~~~Pl~ 193 (392)
T d1gc0a_ 134 -LQALEAAMT--------PATRVIYFESP-ANPNMHMAD----IAGVAKIARKHGATVVVDNTYC------TPYLQRPLE 193 (392)
T ss_dssp -HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHGGGTCEEEEECTTT------HHHHCCGGG
T ss_pred -HHHHHHHCC--------CCCEEEEECCC-CCCEEEECC----HHHHHHHHHHCCCEEEEECCCC------CCCCCCHHH
T ss_conf -999998478--------78759996466-632135424----3999999984598799836725------745058678
Q ss_pred CCCCEE--ECCCCCCC-CCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHH
Q ss_conf 999622--00433478-887511898225777411288865300001589987899999999999951967012089999
Q 003472 680 CVPDIA--CYGKLLTG-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (817)
Q Consensus 680 v~PDIi--tlgK~Lgg-Gy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~ 756 (817)
.-.||+ ...|-++| |-+-.++++++++.++...-.. .+. ..|. ..+|..|.-.+..|+-+.- ..++..+++
T Consensus 194 ~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~-~~~-~~G~--~~~p~da~ll~rgl~TL~l--Rm~~~~~nA 267 (392)
T d1gc0a_ 194 LGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQG-LKD-MTGA--VLSPHDAALLMRGIKTLNL--RMDRHCANA 267 (392)
T ss_dssp GTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTH-HHH-HTCC--CCCHHHHHHHHHHHTTHHH--HHHHHHHHH
T ss_pred HCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHH-HHH-CCCC--CCCHHHHHHHHHCCCCHHH--HHHHHHHHH
T ss_conf 489889986652035985544310243067898988999-997-0388--6880457999822060899--999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEE------------------EEEEEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 999999999999998739992419755------------------16999997107977771129999999
Q 003472 757 RILRELWDLELIQQISSHRTVQRVVAL------------------GTLCAIELQAAGCNAGYCLIELFLYN 809 (817)
Q Consensus 757 ~~l~~~l~~~l~~~~~~~p~I~~VrG~------------------Glm~gIel~~~~~~~~~~~~~~~~~~ 809 (817)
..+ -+.+++||.|..|.-- |.|+.+++... .+....|+..
T Consensus 268 ~~l--------A~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~~-----~~~~~~f~~~ 325 (392)
T d1gc0a_ 268 QVL--------AEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG-----IGAGRRFMNA 325 (392)
T ss_dssp HHH--------HHHHHTCTTEEEEEEC----------------CCTTEEEEEETTH-----HHHHHHHHHH
T ss_pred HHH--------HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECC-----HHHHHHHHHH
T ss_conf 999--------999973998657865244588653321334567783799999599-----9999999985
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=98.91 E-value=1e-06 Score=57.50 Aligned_cols=284 Identities=12% Similarity=0.055 Sum_probs=137.1
Q ss_pred CCHHHHHHHHHHHHHCCCCC---CCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 99679999999983119998---661999078678999999999998530244100024877645555208999818744
Q 003472 441 VYEPALECAELLLQGVGKGW---ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYH 517 (817)
Q Consensus 441 ~~~~~~eLae~L~~~~~~~~---~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyH 517 (817)
..+....+|+.+.+..+... -+.++.++++++|.+.+++.. ...| ..|+...-+|.
T Consensus 86 ~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l-----~~pG----------------d~Vlv~~P~y~ 144 (431)
T d1m7ya_ 86 LPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCL-----ADPG----------------EAVLIPTPYYP 144 (431)
T ss_dssp CHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHH-----CCTT----------------CEEEEEESCCT
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHH-----CCCC----------------CEEEEECCCCH
T ss_conf 29999999999999858999988233998788899999999996-----5899----------------98999079860
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHH
Q ss_conf 78642111248998877677887568765558984222476212148711110002344444567301221026911689
Q 003472 518 GDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLA 597 (817)
Q Consensus 518 G~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~ 597 (817)
+.........+ ...+++|-. .+.-|. -+.+.
T Consensus 145 ~~~~~~~~~~g------------------------------~~~v~v~~~---------------~~~~~~--l~~~~-- 175 (431)
T d1m7ya_ 145 GFDRDLKWRTG------------------------------VEIVPIHCT---------------SSNGFQ--ITETA-- 175 (431)
T ss_dssp THHHHTTTTTC------------------------------CEEEEEECC---------------GGGTSC--CCHHH--
T ss_pred HHHHHHHHHCC------------------------------CEECCCCCC---------------CHHCCC--CCHHH--
T ss_conf 27777787268------------------------------420135553---------------000223--34777--
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHH--
Q ss_conf 999999999974199988888079999945334689731289889999999976239939985110065655631023--
Q 003472 598 SIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-- 675 (817)
Q Consensus 598 ~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~-- 675 (817)
..+.+.+... .+....+.++.-| +.-.|... +.+-++++.++|++||+++|.||++..+---+..+..
T Consensus 176 --~~~~~~~~~~-----~~~~~~~i~~~nP--~NPtG~~~-s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~ 245 (431)
T d1m7ya_ 176 --LEEAYQEAEK-----RNLRVKGVLVTNP--SNPLGTTM-TRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVM 245 (431)
T ss_dssp --HHHHHHHHHH-----TTCCEEEEEEESS--CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHH
T ss_pred --HHHHHHHHHH-----CCCCCEEEEECCC--CCCCCCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHH
T ss_conf --6555555542-----2676228996574--34543322-222233222222236730110002444224788877889
Q ss_pred HH---CCC--C---CC--E--EECCCCCC-CCCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 00---089--9---96--2--20043347-88875118982257774112888653000015899878999999999999
Q 003472 676 DL---LGC--V---PD--I--ACYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKW 742 (817)
Q Consensus 676 e~---~gv--~---PD--I--itlgK~Lg-gGy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~i 742 (817)
+. ... . +| + -++||.++ .| +-+|.+++.+++....... .......++...++..+.+..
T Consensus 246 ~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G-~RiG~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~a~l~~ 317 (431)
T d1m7ya_ 246 EVLKDRNCDENSEVWQRVHVVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK-------MSSFGLVSSQTQHLLSAMLSD 317 (431)
T ss_dssp HHTTTTTCSSSSSGGGGEEEEEESSSSSCCGG-GCEEEEEESCHHHHHHHHH-------HGGGSCCCHHHHHHHHHHHHC
T ss_pred HHHHHCCCCCCCCCCCEEEEEECCCCCCCCCC-CCCCEECCCHHHHHHHHHH-------HHCCCCCCCCCCCHHHHHHCC
T ss_conf 97422154211356763999916765566888-7634124632566889999-------731133333221002333202
Q ss_pred HCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-EEEEEEEEECCCCCCCCCHHHHHHHHHHH-CCCC
Q ss_conf 51967012089999999999999999998739992419755-16999997107977771129999999998-2989
Q 003472 743 FKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYCLIELFLYNFLT-TGMH 816 (817)
Q Consensus 743 le~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~-Glm~gIel~~~~~~~~~~~~~~~~~~~l~-~G~~ 816 (817)
... ..+.+.++...+.+.. +.+.+.+++..+ .-+... |+++-+++...-.....+....+..++++ .||+
T Consensus 318 ~~~--~~~~~~~~~~~~~~~~-~~l~~~L~~~gi-~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~ 389 (431)
T d1m7ya_ 318 KKL--TKNYIAENHKRLKQRQ-KKLVSGLQKSGI-SCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLN 389 (431)
T ss_dssp HHH--HHHHHHHHHHHHHHHH-HHHHHHHHTTTC-EECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEE
T ss_pred CHH--HHHHHHHHHHHHHHHH-HHHHHHHHCCCC-EEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEE
T ss_conf 202--4543210012456665-656655104896-77369940499798834346676427999999999978999
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.91 E-value=8.7e-07 Score=57.88 Aligned_cols=318 Identities=11% Similarity=0.006 Sum_probs=157.6
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHCCCCC-CCEEEEECCH
Q ss_conf 667544512203565223578998997999999998873155-58999999679999999983119998-6619990786
Q 003472 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKGW-ASRAYFSDNG 470 (817)
Q Consensus 393 dG~~~~~~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~~~~~-~~~v~f~~SG 470 (817)
+|+ ..|++..|.=+ ...+.-.+.+.+|+.+.++...+ +....+..+....+++.+....+... .+.+..++++
T Consensus 28 ~G~----~vi~l~~G~P~-~~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~ 102 (395)
T d1xi9a_ 28 KGI----KVIRLNIGDPV-KFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAV 102 (395)
T ss_dssp TTC----CCEECCCCCGG-GTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHH
T ss_pred CCC----CEEECCCCCCC-CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 799----70899899999-7899997999999999996388988999789999999998643204523121223232222
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78999999999998530244100024877645555208999818744786421112489988776778875687655589
Q 003472 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (817)
Q Consensus 471 seAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~ 550 (817)
.++...+++.. ...| ..|+..+-+|+.....+ ...+.
T Consensus 103 ~~~~~~~~~~~-----~~~G----------------d~vlv~~P~y~~~~~~~-~~~g~--------------------- 139 (395)
T d1xi9a_ 103 TEALQLIFGAL-----LDPG----------------DEILVPGPSYPPYTGLV-KFYGG--------------------- 139 (395)
T ss_dssp HHHHHHHHHHH-----CCTT----------------CEEEEEESCCHHHHHHH-HHTTC---------------------
T ss_pred CHHHHHHHHHH-----CCCC----------------CEEEECCCCCCCCHHHH-HHCCC---------------------
T ss_conf 01321001210-----4799----------------98998388333310003-20597---------------------
Q ss_pred CCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC
Q ss_conf 84222476212148711110002344444567301221026911689999999999974199988888079999945334
Q 003472 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (817)
Q Consensus 551 p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~q 630 (817)
..+++|.... ++ | .-| .+.+++.+. ......++.-| +
T Consensus 140 ---------~~v~v~~~~~-----------~~----~--~~d--------~~~~~~~~~-------~~~~~v~l~~P--~ 176 (395)
T d1xi9a_ 140 ---------KPVEYRTIEE-----------ED----W--QPD--------IDDIRKKIT-------DRTKAIAVINP--N 176 (395)
T ss_dssp ---------EEEEEEEEGG-----------GT----S--EEC--------HHHHHHHCC-------TTEEEEEEESS--C
T ss_pred ---------EEEEEECCCC-----------CC----C--CCH--------HHHHHHHHC-------CCCCEEEECCC--C
T ss_conf ---------7999843322-----------35----4--312--------788997640-------26508996699--8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCEE---ECCCCCCC-CCCCCEEEEECH-
Q ss_conf 6897312898899999999762399399851100656556310230008999622---00433478-887511898225-
Q 003472 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLTG-GVIPLAATLATN- 705 (817)
Q Consensus 631 g~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDIi---tlgK~Lgg-Gy~Plsavl~~~- 705 (817)
.=.|... +.+.+++|.++|++|++++|.||+...+.--++........-...++ ++||.++. | +-+|.++...
T Consensus 177 NPTG~~~-s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G-lRvG~~~~~~~ 254 (395)
T d1xi9a_ 177 NPTGALY-DKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATG-WRLGYMYFVDP 254 (395)
T ss_dssp TTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGG-GCCEEEEEECT
T ss_pred CCCCCHH-HHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCHHCCCCH-HHCEEEEECCH
T ss_conf 9754101-179999998555425855774121000132222345032078888899958622142540-10076685187
Q ss_pred -HHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-
Q ss_conf -777411288865300001589987899999999999951967012089999999999999999998739992419755-
Q 003472 706 -AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL- 783 (817)
Q Consensus 706 -~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~- 783 (817)
.....+... .......+...+..+-.++.+.++- .++..+.+.+..+...+ .+.+.+++.+.+.-....
T Consensus 255 ~~~~~~~~~~---~~~~~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~~~----~l~~~L~~~~~~~~~~p~g 325 (395)
T d1xi9a_ 255 ENKLSEVREA---IDRLARIRLCPNTPAQFAAIAGLTG--PMDYLKEYMKKLKERRD----YIYKRLNEIPGISTTKPQG 325 (395)
T ss_dssp TCTTHHHHHH---HHHHHHHTCCSCSHHHHHHHHHHHS--CCHHHHHHHHHHHHHHH----HHHHHHHTSTTEECCCCCB
T ss_pred HHHHHHHHHH---HHHHHCCCCCCCHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHH----HHHHHHHHCCCCEECCCCE
T ss_conf 9999999999---8886437878479999999998608--79999999999999999----9999998679941158985
Q ss_pred EEEEEEEEECCCCCCCCCHHHHHHHHHH-HCCCC
Q ss_conf 1699999710797777112999999999-82989
Q 003472 784 GTLCAIELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 784 Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~G~~ 816 (817)
|.++-+++.... ......+...++ +.||.
T Consensus 326 g~~~~~~l~~~~----~~~~~~~~~~ll~~~gV~ 355 (395)
T d1xi9a_ 326 AFYIFPKIEVGP----WKNDKEFVLDVLHNAHVL 355 (395)
T ss_dssp SSEECCEECSCS----CSSHHHHHHHHHHHHCEE
T ss_pred EEEEEEECCCCC----CCCHHHHHHHHHHHCCEE
T ss_conf 589817888889----999999999999969999
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=1.9e-06 Score=55.78 Aligned_cols=300 Identities=13% Similarity=0.055 Sum_probs=154.2
Q ss_pred CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCC---CCCCCCCCCHHHHHHHHHHHHHCCCCCC--CEEEEECCHHHHH
Q ss_conf 1220356522357899899799999999887315---5589999996799999999831199986--6199907867899
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG---HVMFPENVYEPALECAELLLQGVGKGWA--SRAYFSDNGSTAI 474 (817)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~---~~~~~~~~~~~~~eLae~L~~~~~~~~~--~~v~f~~SGseAv 474 (817)
.+||+..|. -.+...+.+.+|+++++.... .+....+..+....+++.+.+..+.... +.+++++++++|.
T Consensus 26 dvI~l~~G~----p~~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al 101 (418)
T d1w7la_ 26 DVVNLGQGF----PDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL 101 (418)
T ss_dssp CCEECCCCS----CSSCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred CCEECCCCC----CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHH
T ss_conf 978888988----9998899999999999857974468899867899999999999998589988101156425857999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999985302441000248776455552089998187447864211124899887767788756876555898422
Q 003472 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (817)
Q Consensus 475 E~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~ 554 (817)
..++.... .. ...|+..+.+|+.-...+......... .
T Consensus 102 ~~~~~~l~-----~~----------------g~~vlv~~p~~~~y~~~~~~~g~~~v~-~-------------------- 139 (418)
T d1w7la_ 102 FTAFQALV-----DE----------------GDEVIIIEPFFDCYEPMTMMAGGRPVF-V-------------------- 139 (418)
T ss_dssp HHHHHHHC-----CT----------------TCEEEEEESCCTTHHHHHHHTTCEEEE-E--------------------
T ss_pred HHHHHHHC-----CC----------------CCEEECCCCCCCHHHHHHHHCCCEEEC-C--------------------
T ss_conf 99998622-----67----------------761530455660068999974987401-4--------------------
Q ss_pred CCCCCEEECCCCHHHHCCCCCCCCCCCC-CCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 2476212148711110002344444567-301221026911689999999999974199988888079999945334689
Q 003472 555 MYNSKWILSLPEWLYSKIVEHKDITFCS-RDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (817)
Q Consensus 555 ~~~~~~~v~~P~~~~~~~~~~~~~~~~d-~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~g 633 (817)
...|..... ... .+.-+ ..+ ...+.. . ..+...+.++.-| +.-.
T Consensus 140 -------~~~~~~~~~---------~~~~~~~~~--~~d--------~~~~~~--~-----~~~~~~~i~~~~p--~NPt 184 (418)
T d1w7la_ 140 -------SLKPGPIQN---------GELGSSSNW--QLD--------PMELAG--K-----FTSRTKALVLNTP--NNPL 184 (418)
T ss_dssp -------ECEECC------------CCSEEGGGE--ECC--------HHHHHH--H-----CCTTEEEEEEESS--CTTT
T ss_pred -------CCCCCCCCC---------CCCCCCCCC--CCC--------HHHHHC--C-----CCCCCCCEECCCC--CCCC
T ss_conf -------566542223---------443224575--300--------554302--2-----3566531112676--7765
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC--HHHHCCCCC---CEEECCCCCCC-CCCCCEEEEECHHH
Q ss_conf 7312898899999999762399399851100656556310--230008999---62200433478-88751189822577
Q 003472 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET--TADLLGCVP---DIACYGKLLTG-GVIPLAATLATNAV 707 (817)
Q Consensus 634 G~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~--a~e~~gv~P---DIitlgK~Lgg-Gy~Plsavl~~~~i 707 (817)
|... +.+.+++|.++|++|++.+|.||++..|...+... ..+..+..+ -+..+||.++. | +.+|.+++.+++
T Consensus 185 G~~~-s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG-~RvG~~v~~~~~ 262 (418)
T d1w7la_ 185 GKVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATG-WKVGWVLGPDHI 262 (418)
T ss_dssp CCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGG-GCCEEEECCHHH
T ss_pred CCCC-CHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCEECCCCCCCCCCC-CCCCCCCCCHHH
T ss_conf 6433-38899999999986298711556667751589899897771654455520015676426887-743432232025
Q ss_pred HHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHH---CC--CCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 741128886530000158998789999999999995---19--6701208999999999999999999873999241975
Q 003472 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWF---KD--PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA 782 (817)
Q Consensus 708 ~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~il---e~--~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG 782 (817)
++.+... ....+++.+.++..++.+.|.-- .+ .+....+.+.-+..++ .+.+.+++.++-...-.
T Consensus 263 ~~~l~~~------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~----~l~~~L~~~g~~~~~P~ 332 (418)
T d1w7la_ 263 MKHLRTV------HQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRD----HMIRSLQSVGLKPLIPQ 332 (418)
T ss_dssp HHHHHHH------HHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHH----HHHHHHHTTTCEEEECS
T ss_pred HHHHCCC------CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH----HHHHHHHHCCCCCCCCC
T ss_conf 5553023------3223222320256778877652223333443322231023332000----12345664388123798
Q ss_pred EEEEEEEEEE
Q ss_conf 5169999971
Q 003472 783 LGTLCAIELQ 792 (817)
Q Consensus 783 ~Glm~gIel~ 792 (817)
-|.++-+++.
T Consensus 333 gg~f~~~~~~ 342 (418)
T d1w7la_ 333 GSYFLITDIS 342 (418)
T ss_dssp BSSEEEEECH
T ss_pred CEEEEEEECC
T ss_conf 2049988771
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=98.89 E-value=3.5e-08 Score=66.72 Aligned_cols=182 Identities=11% Similarity=-0.008 Sum_probs=103.3
Q ss_pred CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCEEECC--CCCCCCC
Q ss_conf 80799999453346897312898899999999762399399851100656556310230008999622004--3347888
Q 003472 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGV 695 (817)
Q Consensus 618 ~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDIitlg--K~LggGy 695 (817)
.++..+.+--+ ....|...+ ++++.++|+++|+++++|-+|+ +|.. . .+......|+++++ |.+++-
T Consensus 126 ~~~~~v~~~~~-~~~tG~~~~----i~~i~~~~~~~g~~~~vDa~qs-~G~~--~--~d~~~~~~D~~~~s~~K~l~gp- 194 (361)
T d1m32a_ 126 PTISHIAMVHS-ETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGI--P--MDIAALHIDYLISSANKCIQGV- 194 (361)
T ss_dssp TTCCEEEEESE-ETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTS--C--CCTTTTTCSEEEEESSSTTCCC-
T ss_pred CCCCCEEEEEE-ECCCCCCHH----HHHHHHHHCCCCEEEEEECCCC-CCCC--C--CCCCCCCCCEEEEEECCCCCCC-
T ss_conf 47662699843-002342011----2344422114521467520025-6745--5--3223344526876303453379-
Q ss_pred CCCEEEEECHHHHHHHCCCCCCC------------EEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHH
Q ss_conf 75118982257774112888653------------000015899878999999999999519670120899999999999
Q 003472 696 IPLAATLATNAVFDSFVGDSKLK------------ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELW 763 (817)
Q Consensus 696 ~Plsavl~~~~i~e~~~~~~~~~------------~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l 763 (817)
.=++.+.++++..+......... .......++.+..++.+...+++.+.+++..+....+.......+
T Consensus 195 ~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 274 (361)
T d1m32a_ 195 PGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSL 274 (361)
T ss_dssp SSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 98667896255541000245664322001110112345666787771044689999999998500356678889988777
Q ss_pred HHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 9999999873999241975516999997107977771129999999998298
Q 003472 764 DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGM 815 (817)
Q Consensus 764 ~~~l~~~~~~~p~I~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~G~ 815 (817)
.+.+.............|..+ +.+|.+.+.. ......+...+.++|+
T Consensus 275 ~~~~~~~g~~~~~~~~~rs~~-v~~~~~p~~~----~~~~~~~~~~l~~~gi 321 (361)
T d1m32a_ 275 VAGMRALGFNTLLDDELHSPI-ITAFYSPEDP----QYRFSEFYRRLKEQGF 321 (361)
T ss_dssp HHHHHHTTCCBSSCGGGBCSS-EEEEECCCCT----TCCHHHHHHHHHHTTE
T ss_pred HHHHHHCCCCCCCCHHHCCCC-EEEEECCCCC----CCCHHHHHHHHHHCCC
T ss_conf 777762287546785664996-7999899988----7799999999998892
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.88 E-value=5.5e-07 Score=59.13 Aligned_cols=249 Identities=12% Similarity=0.088 Sum_probs=145.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 99967999999998311999866199907867899999999999853024410002487764555520899981874478
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++....|+++|+++-+ .+.++.++||-.|+-+++.... +. ...||+.+..|+|.
T Consensus 64 ~~nPt~~~LE~~la~LEg---g~~a~~~sSGMaAi~~~l~~l~-----~~----------------Gd~iv~~~~~Yg~t 119 (398)
T d1qgna_ 64 YGNPTTVVLEEKISALEG---AESTLLMASGMCASTVMLLALV-----PA----------------GGHIVTTTDCYRKT 119 (398)
T ss_dssp GCCHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHHHHS-----CS----------------SCEEEEETTSCHHH
T ss_pred CCCHHHHHHHHHHHHHHC---CCEEEEECCCCHHHHHHHHHCC-----CC----------------CCCCCCCCCCCCHH
T ss_conf 988689999999999829---9348896486468888876303-----45----------------54323222210113
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHH
Q ss_conf 64211124899887767788756876555898422247621214871111000234444456730122102691168999
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (817)
.......- ...|. .+ .|-|. .+ .
T Consensus 120 ~~l~~~~~--------------~~~gi--------------~~----------------~~~~~-------~~--~---- 142 (398)
T d1qgna_ 120 RIFIETIL--------------PKMGI--------------TA----------------TVIDP-------AD--V---- 142 (398)
T ss_dssp HHHHHHTG--------------GGGTC--------------EE----------------EEECS-------SC--H----
T ss_pred HHHHCCCC--------------CCCCC--------------CC----------------CCCCC-------CC--H----
T ss_conf 33210343--------------45664--------------32----------------22442-------21--0----
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCC
Q ss_conf 99999999741999888880799999453346897312898899999999762399399851100656556310230008
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+..+..+ ..++..|++|.. ..-. +.+++ ++++.++|+++|+++|+|-... ....+.-+.
T Consensus 143 -~~~~~~~~--------~~~t~~v~~Esp-sNP~-l~v~D---i~~ia~ia~~~g~~~vVDnT~a------tP~~~~Pl~ 202 (398)
T d1qgna_ 143 -GALELALN--------QKKVNLFFTESP-TNPF-LRCVD---IELVSKLCHEKGALVCIDGTFA------TPLNQKALA 202 (398)
T ss_dssp -HHHHHHHH--------HSCEEEEEEESS-CTTT-CCCCC---HHHHHHHHHHTTCEEEEECTTT------CTTTCCTTT
T ss_pred -HHHHHHHC--------CCCCEEEECCCC-CCCC-CCCCH---HHHHHHHHHHCCCEEEECCEEE------CCCCCCCHH
T ss_conf -23343210--------356317970574-3000-24321---7999998864498799615021------445577223
Q ss_pred CCCCEE--ECCCCCCC-CCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHH
Q ss_conf 999622--00433478-887511898225777411288865300001589987899999999999951967012089999
Q 003472 680 CVPDIA--CYGKLLTG-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (817)
Q Consensus 680 v~PDIi--tlgK~Lgg-Gy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~ 756 (817)
.-.||+ ...|-++| +-+-.+++..+++.++..... ....--..+|..|...+..|+-+.- ..++..+++
T Consensus 203 ~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~------~~~~G~~l~p~~a~ll~rgl~TL~l--Rm~~~~~nA 274 (398)
T d1qgna_ 203 LGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL------HHILGGALNPNAAYLIIRGMKTLHL--RVQQQNSTA 274 (398)
T ss_dssp TTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH------HHHHCCCCCHHHHHHHHHHGGGHHH--HHHHHHHHH
T ss_pred HCCCEEEEECHHHCCCCCCEEEHHHCCHHHHHHHHHHH------CCCCCCCCCHHHHHHHHHCCHHHHH--HHHHHHHHH
T ss_conf 17989998100015765311100100013343221111------0367774897999999833347788--999988999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEE------------------EEEEEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 99999999999999873999241975------------------5169999971079777711299999999
Q 003472 757 RILRELWDLELIQQISSHRTVQRVVA------------------LGTLCAIELQAAGCNAGYCLIELFLYNF 810 (817)
Q Consensus 757 ~~l~~~l~~~l~~~~~~~p~I~~VrG------------------~Glm~gIel~~~~~~~~~~~~~~~~~~~ 810 (817)
..+ -+.+++||.|..|.- -|.|+.+++... .+....|+.++
T Consensus 275 ~~l--------A~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~-----~~~a~~f~~~L 333 (398)
T d1qgna_ 275 LRM--------AEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD-----LLTTAKFVDAL 333 (398)
T ss_dssp HHH--------HHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC-----HHHHHHHHHHC
T ss_pred HHH--------HHHHHHCCCEEECCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCC-----HHHHHHHHHCC
T ss_conf 999--------999973988200578888899336555432589872046664399-----99999999728
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=98.87 E-value=2.6e-06 Score=54.89 Aligned_cols=309 Identities=10% Similarity=-0.031 Sum_probs=147.9
Q ss_pred CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CCEEEEECCHHHHHHHHH
Q ss_conf 1220356522357899899799999999887315558999999679999999983119998-661999078678999999
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGW-ASRAYFSDNGSTAIEIAL 478 (817)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~-~~~v~f~~SGseAvE~AL 478 (817)
..|++..|. ..+...|.|.+|+.+.++...+ ..+....+....+++.+.+..+... -+.++.++++++|...++
T Consensus 32 ~vi~l~~g~----pdf~~p~~v~~al~~~~~~~~~-~Y~~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~ 106 (394)
T d1c7na_ 32 EVVPLSVAD----MEFKNPPELIEGLKKYLDETVL-GYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAV 106 (394)
T ss_dssp TCCCCCSSS----CSSCCCHHHHHHHHHHHHHCCC-SSBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHH
T ss_pred CEEECCCCC----CCCCCCHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHH
T ss_conf 768832799----7999889999999999857886-89998799999999999985599888750476334212343321
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999853024410002487764555520899981874478642111248998877677887568765558984222476
Q 003472 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (817)
Q Consensus 479 KlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~ 558 (817)
+.. ...| ..|+.....|.+..........
T Consensus 107 ~~~-----~~pg----------------d~vi~~~p~~~~~~~~~~~~g~------------------------------ 135 (394)
T d1c7na_ 107 REF-----TKPG----------------DGVIIITPVYYPFFMAIKNQER------------------------------ 135 (394)
T ss_dssp HHH-----CCTT----------------CEEEECSSCCTHHHHHHHTTTC------------------------------
T ss_pred CCC-----CCCC----------------CCCCCCCCCCCCHHHHHHHHHH------------------------------
T ss_conf 034-----4443----------------3233346766204667765430------------------------------
Q ss_pred CEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 21214871111000234444456730122102691168999999999997419998888807999994533468973128
Q 003472 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (817)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~ 638 (817)
..++.|... .+. .+ .-| .+.++..+. .+..-+.++.-| +.=.|.+.
T Consensus 136 -~~v~~~~~~-----------~~~---~~--~~d--------~~~~~~~~~------~~~~~~i~l~~P--~NPTG~v~- 181 (394)
T d1c7na_ 136 -KIIECELLE-----------KDG---YY--TID--------FQKLEKLSK------DKNNKALLFCSP--HNPVGRVW- 181 (394)
T ss_dssp -EEEECCCEE-----------ETT---EE--ECC--------HHHHHHHHT------CTTEEEEEEESS--BTTTTBCC-
T ss_pred -CCCCCCCCC-----------CCC---CC--CCH--------HHHHHHHHC------CCCCEEEEECCC--CCCCCEEC-
T ss_conf -022222224-----------565---55--402--------556665530------456329994552--35654125-
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCH---HHHCC---CCCCEEECCCCCC-CCCCCCEEEEECH-HHHHH
Q ss_conf 988999999997623993998511006565563102---30008---9996220043347-8887511898225-77741
Q 003472 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT---ADLLG---CVPDIACYGKLLT-GGVIPLAATLATN-AVFDS 710 (817)
Q Consensus 639 ~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a---~e~~g---v~PDIitlgK~Lg-gGy~Plsavl~~~-~i~e~ 710 (817)
+.+.+++|.++|+++++++|.||++..|---+.... ....+ ..--+..+||.++ .| +-++.+++.+ .+.+.
T Consensus 182 s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G-~R~g~~~~~~~~i~~~ 260 (394)
T d1c7na_ 182 KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAG-MGMSNIIIKNPDIRER 260 (394)
T ss_dssp CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGG-GCCEEEECCCHHHHHH
T ss_pred CHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCCHHHHHH
T ss_conf 699953432034543205861455321245886664101110023111032345420012222-2322223567033445
Q ss_pred HCCCCCCCEEECCCCCCC-CHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEEE-EEEE
Q ss_conf 128886530000158998-789999999999995196701208999999999999999999873-9992419755-1699
Q 003472 711 FVGDSKLKALLHGHSYSA-HALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS-HRTVQRVVAL-GTLC 787 (817)
Q Consensus 711 ~~~~~~~~~~~h~~T~~g-nPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~-~p~I~~VrG~-Glm~ 787 (817)
+... ....+... .....+++...... .+...+.+.+..++..+. +.+.++. .+.+...... |.++
T Consensus 261 ~~~~------~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~p~g~~~~ 328 (394)
T d1c7na_ 261 FTKS------RDATSGMPFTTLGYKACEICYKE--CGKWLDGCIKVIDKNQRI----VKDFFEVNHPEIKAPLIEGTYLQ 328 (394)
T ss_dssp HHHH------HHHTTCCCCCHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHH----HHHHHHHHCTTSBCCCCSBSSEE
T ss_pred HHHH------HHHCCCCCCCCCCCHHHHHHHCC--HHHHHCCCCCCCCHHHHH----HHHHHHCCCCCEEECCCCCEEEE
T ss_conf 5555------43003443222221024554200--144301311121012321----00012125653042278950489
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHC-CCC
Q ss_conf 99971079777711299999999982-989
Q 003472 788 AIELQAAGCNAGYCLIELFLYNFLTT-GMH 816 (817)
Q Consensus 788 gIel~~~~~~~~~~~~~~~~~~~l~~-G~~ 816 (817)
-+++...+ .....+...++++ ||.
T Consensus 329 ~~~~~~~~-----~~~~~~~~~Ll~~~gV~ 353 (394)
T d1c7na_ 329 WIDFRALK-----MDHKAMEEFMIHKAQIF 353 (394)
T ss_dssp EEECGGGC-----CCHHHHHHHHHHTTCCC
T ss_pred EEECCCCC-----CCHHHHHHHHHHHCCEE
T ss_conf 89788889-----99999999999869999
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=3.2e-06 Score=54.30 Aligned_cols=287 Identities=9% Similarity=-0.009 Sum_probs=162.9
Q ss_pred CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCH-------HHHHHHHHHHHHCCCCCCCEEEEECCHHH
Q ss_conf 12203565223578998997999999998873155589999996-------79999999983119998661999078678
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYE-------PALECAELLLQGVGKGWASRAYFSDNGST 472 (817)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~~~~~~~~~~-------~~~eLae~L~~~~~~~~~~~v~f~~SGse 472 (817)
-|+|..+ .|-- .+.+.+++.+.+.... .+.....+. ...+.-+.++++++...-+.+.|+.+.++
T Consensus 24 iYld~a~------~~~~-p~~v~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~ 95 (405)
T d1jf9a_ 24 AYLDSAA------SAQK-PSQVIDAEAEFYRHGY-AAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTE 95 (405)
T ss_dssp EECCTTT------CCCC-CHHHHHHHHHHHHHTC-CCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHH
T ss_pred EEEECCC------CCCC-CHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 9973820------0689-9999999999998666-987630409999999999999999999839987554302376888
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999853024410002487764555520899981874478642111248998877677887568765558984
Q 003472 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (817)
Q Consensus 473 AvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~ 552 (817)
++..+++.. ....... ...||.....||........+.... |.
T Consensus 96 ~~~~~~~~~-~~~~~~~----------------g~~il~~~~e~~s~~~~~~~~a~~~--------------g~------ 138 (405)
T d1jf9a_ 96 GINLVANSW-GNSNVRA----------------GDNIIISQMEHHANIVPWQMLCARV--------------GA------ 138 (405)
T ss_dssp HHHHHHHHH-HHHHCCT----------------TCEEEEETTCCGGGTHHHHHHHHHH--------------TC------
T ss_pred HHHHHHHCC-CCCCCCC----------------CCEEEEEECCCCCHHHHHHHHHHHC--------------CC------
T ss_conf 977888423-3102678----------------9989998375331699999999973--------------96------
Q ss_pred CCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 22247621214871111000234444456730122102691168999999999997419998888807999994533468
Q 003472 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (817)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~ 632 (817)
.+..+|....- .-| .+.++..+ .+++..|.+.-+ ...
T Consensus 139 -----~v~~~~~~~~g-----------~~~------------------~~~~~~~i--------~~~t~lv~~~~v-~~~ 175 (405)
T d1jf9a_ 139 -----ELRVIPLNPDG-----------TLQ------------------LETLPTLF--------DEKTRLLAITHV-SNV 175 (405)
T ss_dssp -----EEEEECBCTTS-----------CBC------------------GGGHHHHC--------CTTEEEEEEESB-CTT
T ss_pred -----EEEEECCCCCC-----------CCC------------------HHHHHHHC--------CCCCEEEEEECC-CCC
T ss_conf -----89998779988-----------387------------------99999753--------699579999667-776
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCEEEC--CCCCCCCCCCCEEEEECHHHHHH
Q ss_conf 9731289889999999976239939985110065655631023000899962200--43347888751189822577741
Q 003472 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDS 710 (817)
Q Consensus 633 gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDIitl--gK~LggGy~Plsavl~~~~i~e~ 710 (817)
.|.+.| ++++.++|+++|+++++|=+|+ .|.. ..-.+. ..+|++++ -|-+| . -=+|++.++++..+.
T Consensus 176 tG~~~p----i~~i~~~~~~~g~~~~vD~~q~-~g~~--~id~~~--~~~D~~~~s~hK~~G-p-~G~g~l~v~~~~~~~ 244 (405)
T d1jf9a_ 176 LGTENP----LAEMITLAHQHGAKVLVDGAQA-VMHH--PVDVQA--LDCDFYVFSGHKLYG-P-TGIGILYVKEALLQE 244 (405)
T ss_dssp TCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS--CCCHHH--HTCSEEEEEGGGTTS-C-SSCEEEEECHHHHTT
T ss_pred CCCCCC----HHHHHHHHHHCCCEEECCCCEE-CCCC--CCCHHH--CCCCEEECCCCCCCC-C-CCCEEEEECHHHHCC
T ss_conf 554384----6776667887397564155400-0015--653333--078646613230156-8-875102422655403
Q ss_pred HCCCCC-------------------CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 128886-------------------5300001589987899999999999951967012089999999999999999998
Q 003472 711 FVGDSK-------------------LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQI 771 (817)
Q Consensus 711 ~~~~~~-------------------~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~ 771 (817)
...... ...+ ..+ +.+..++++..++++++++.+. +++.+....+.. .+.+.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-e~G--T~~~~~~~~l~~al~~~~~~g~-~~i~~~~~~L~~----~~~~~l 316 (405)
T d1jf9a_ 245 MPPWEGGGSMIATVSLSEGTTWTKAPWRF-EAG--TPNTGGIIGLGAALEYVSALGL-NNIAEYEQNLMH----YALSQL 316 (405)
T ss_dssp CCCSSCSSSSEEECCTTTCCEECCTTGGG-CCS--SCCHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHH----HHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHH-CCC--CCCHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHH----HHHHHH
T ss_conf 68632235656753445556555532243-077--8767789999999999998184-999999999998----877665
Q ss_pred HCCCCC--CEEEEEEEEEEEEEEC
Q ss_conf 739992--4197551699999710
Q 003472 772 SSHRTV--QRVVALGTLCAIELQA 793 (817)
Q Consensus 772 ~~~p~I--~~VrG~Glm~gIel~~ 793 (817)
+..+.+ .....++..+.+.+..
T Consensus 317 ~~~~~~~~~~~~~r~~ivsf~~~~ 340 (405)
T d1jf9a_ 317 ESVPDLTLYGPQNRLGVIAFNLGK 340 (405)
T ss_dssp TTSTTEEEESCTTCCSEEEEEETT
T ss_pred HCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 138865556876767479997389
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=98.84 E-value=4.2e-07 Score=59.87 Aligned_cols=219 Identities=14% Similarity=0.053 Sum_probs=124.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 97999999998873155589999996799999999831199986619990786789999999999985302441000248
Q 003472 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (817)
Q Consensus 418 ~p~I~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~ 497 (817)
.++-.+++.+.++...++. -+...+|+++|++.++. +.+.+++||+.|+..|++.. . -..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~-----G~~v~~~E~~la~~~g~---~~ai~~~sgt~Al~~al~al-~---~~~-------- 70 (376)
T d1mdoa_ 11 GAEELAAVKTVLDSGWITT-----GPKNQELEAAFCRLTGN---QYAVAVSSATAGMHIALMAL-G---IGE-------- 70 (376)
T ss_dssp CHHHHHHHHHHHHHTCCSS-----SHHHHHHHHHHHHHHCC---SEEEEESCHHHHHHHHHHHT-T---CCT--------
T ss_pred CHHHHHHHHHHHHCCCCCC-----CHHHHHHHHHHHHHHCC---CEEEEECCHHHHHHHHHHHH-C---CCC--------
T ss_conf 9999999999996699768-----97799999999999881---95999688899999999980-8---999--------
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCC
Q ss_conf 77645555208999818744786421112489-98877677887568765558984222476212148711110002344
Q 003472 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-SPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (817)
Q Consensus 498 ~~~~~~~~r~~II~~~gsyHG~t~galslt~~-~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~ 576 (817)
...||.-.-+|+... .++...+. +. +.|. .|+.+
T Consensus 71 --------gdeVi~~~~~~~~~~-~ai~~~g~~pv---------------~~d~-------------~~~~~-------- 105 (376)
T d1mdoa_ 71 --------GDEVITPSMTWVSTL-NMIVLLGANPV---------------MVDV-------------DRDTL-------- 105 (376)
T ss_dssp --------TCEEEEESSSCHHHH-HHHHHTTCEEE---------------EECB-------------CTTTC--------
T ss_pred --------CCEEEEECCCCCCCC-CCHHCCCCCEE---------------EECC-------------CCCCC--------
T ss_conf --------898987234342110-00110343124---------------4114-------------43334--------
Q ss_pred CCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 44456730122102691168999999999997419998888807999994533468973128988999999997623993
Q 003472 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (817)
Q Consensus 577 ~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gil 656 (817)
..| .+.+++.+. .++.|||+--+ .|...+ +.++.++|+++|++
T Consensus 106 ---~~d------------------~~~l~~~i~--------~~tkaIi~~h~----~G~~~~----~~~i~~i~~~~~i~ 148 (376)
T d1mdoa_ 106 ---MVT------------------PEHIEAAIT--------PQTKAIIPVHY----AGAPAD----LDAIYALGERYGIP 148 (376)
T ss_dssp ---CBC------------------HHHHHHHCC--------TTEEEECCBCG----GGCCCC----HHHHHHHHHHHTCC
T ss_pred ---CCC------------------HHHHHHHCC--------CCCEEEEEECC----CCCCCC----HHHHHHHHHHCCCE
T ss_conf ---789------------------999997547--------89819998678----887153----33899988741946
Q ss_pred EEEEEEEECCCCCCCCCHHHHCCCCCCEEEC----CCCCCCCCCCCEEEEECH-HHHHHHC---CCCC------------
Q ss_conf 9985110065655631023000899962200----433478887511898225-7774112---8886------------
Q 003472 657 VIFDEVFTGFWRLGVETTADLLGCVPDIACY----GKLLTGGVIPLAATLATN-AVFDSFV---GDSK------------ 716 (817)
Q Consensus 657 LI~DEV~TGfGRtG~~~a~e~~gv~PDIitl----gK~LggGy~Plsavl~~~-~i~e~~~---~~~~------------ 716 (817)
+|.|.+|+ +|-. +.-...|- -|..++ .|.++.|- -|++++.. ++++... ..+.
T Consensus 149 vIeD~a~a-~g~~---~~~~~~g~-~g~~~~Sf~~~K~l~~g~--GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~ 221 (376)
T d1mdoa_ 149 VIEDAAHA-TGTS---YKGRHIGA-RGTAIFSFHAIKNITCAE--GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGR 221 (376)
T ss_dssp BCEECTTC-TTCE---ETTEETTS-SSEEEEECCTTSSSCSSS--CEEEEESCHHHHHHHHHHTBTTEECC---------
T ss_pred EEECCCHH-CCCE---ECCEECCC-CCCCCCCCCCCCCCCCCC--CCEEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 99646431-0674---68820466-657664278867787788--88899712567999876403687644333223332
Q ss_pred ---CCEEECCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf ---53000015899878999999999999519
Q 003472 717 ---LKALLHGHSYSAHALGCAAAAKSIKWFKD 745 (817)
Q Consensus 717 ---~~~~~h~~T~~gnPla~Aaala~L~ile~ 745 (817)
......+..+..+.+.+|.++.-|+.+++
T Consensus 222 ~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~~~ 253 (376)
T d1mdoa_ 222 APQAEVLAPGYKYNLPDLNAAIALAQLQKLDA 253 (376)
T ss_dssp --CCEESSCCCBCCCCHHHHHHHHHHHHTHHH
T ss_pred CCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 33110000123534401456665543333357
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=98.83 E-value=9.7e-07 Score=57.59 Aligned_cols=238 Identities=11% Similarity=0.042 Sum_probs=141.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 99996799999999831199986619990786789999999999985302441000248776455552089998187447
Q 003472 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (817)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG 518 (817)
...++....|+++|+++-+. +.++.++||-.|+-+++-... +.| ..||+.+..|.|
T Consensus 59 R~~nPT~~~LE~~la~LEgg---~~a~~~sSGmaAi~~~l~~ll-----~~G----------------d~vi~~~~~Yg~ 114 (397)
T d1y4ia1 59 RLGNPTTDALEKKLAVLERG---EAGLATASGISAITTTLLTLC-----QQG----------------DHIVSASAIYGC 114 (397)
T ss_dssp TTSCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CTT----------------CEEEEESSSCHH
T ss_pred CCCCHHHHHHHHHHHHHHCC---CCCEEEHHHHHHHHHHHHHCC-----CCC----------------CEEEEECCCCCC
T ss_conf 89887899999999998499---621110677888888776316-----899----------------865430101233
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHH
Q ss_conf 86421112489988776778875687655589842224762121487111100023444445673012210269116899
Q 003472 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (817)
Q Consensus 519 ~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (817)
.....-.. ....|. . ++|-|. .|
T Consensus 115 t~~~~~~~--------------l~~~Gi--------------~----------------~~~vd~-------~d------ 137 (397)
T d1y4ia1 115 THAFLSHS--------------MPKFGI--------------N----------------VRFVDA-------GK------ 137 (397)
T ss_dssp HHHHHHTH--------------HHHTTC--------------E----------------EEEECT-------TS------
T ss_pred CCHHHHCC--------------CCCCCE--------------E----------------EECCCC-------CC------
T ss_conf 10354313--------------677855--------------7----------------541489-------99------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHC
Q ss_conf 99999999974199988888079999945334689731289889999999976239939985110065655631023000
Q 003472 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (817)
Q Consensus 599 ~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (817)
.+.+++.++ .+...|.+|.. ..-..-+.. ++.+.++|+++|+++|+|-... ..+.++-.
T Consensus 138 --~~~~~~~i~--------~~Tklv~~Esp-~NP~l~v~D----i~~i~~iA~~~gi~~vvDnT~a------tP~~~~Pl 196 (397)
T d1y4ia1 138 --PEEIRAAMR--------PETKVVYIETP-ANPTLSLVD----IETVAGIAHQQGALLVVDNTFM------SPYCQQPL 196 (397)
T ss_dssp --HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT------CTTTCCGG
T ss_pred --HHHHHHHCC--------CCCCEEEECCC-CCCCEEECC----CHHHHHHHHCCCCEEEECCCCC------CCCCCCCH
T ss_conf --899998658--------77738980487-522110033----0789988604785287027522------71547632
Q ss_pred CCCCCEE--ECCCCCCC-CCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCC--CHHHHHHHHHHHHHHCCCCCHHCHH
Q ss_conf 8999622--00433478-88751189822577741128886530000158998--7899999999999951967012089
Q 003472 679 GCVPDIA--CYGKLLTG-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSA--HALGCAAAAKSIKWFKDPQTNHNII 753 (817)
Q Consensus 679 gv~PDIi--tlgK~Lgg-Gy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~g--nPla~Aaala~L~ile~~~~~~~l~ 753 (817)
..-.||+ .+.|-++| +=+-.++++++++.++...-. .+-.++++ +|..|--.+..|+-+.- ..++-.
T Consensus 197 ~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~------~~~~~~G~~l~p~~a~l~~rgl~TL~l--Rm~~~~ 268 (397)
T d1y4ia1 197 QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFV------GLKDITGGCMSPFNAWLTLRGVKTLGI--RMERHC 268 (397)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT------HHHHTTCCCCCHHHHHHHHHHHTTHHH--HHHHHH
T ss_pred HCCCCEEEEEHHHHCCCCCCEEEECCCCCHHHHHHHHHH------HHHHCCCCCCCHHHHHHHHCCCCCHHH--HHHHHH
T ss_conf 028978998513510787414652157878899999999------999674985898999999747176999--999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEE------------------EEEEEEEEEECC
Q ss_conf 99999999999999999873999241975------------------516999997107
Q 003472 754 PERRILRELWDLELIQQISSHRTVQRVVA------------------LGTLCAIELQAA 794 (817)
Q Consensus 754 ~~~~~l~~~l~~~l~~~~~~~p~I~~VrG------------------~Glm~gIel~~~ 794 (817)
+++..+ -+.++.||.|..|+- .|.|+.|++...
T Consensus 269 ~nA~~l--------A~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~ 319 (397)
T d1y4ia1 269 ENALKI--------ARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGG 319 (397)
T ss_dssp HHHHHH--------HHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTH
T ss_pred HHHHHH--------HHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
T ss_conf 999999--------999974899676748887899652222344677875999995699
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=98.79 E-value=4.6e-06 Score=53.27 Aligned_cols=290 Identities=10% Similarity=0.011 Sum_probs=157.6
Q ss_pred CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCH-------HHHHHHHHHHHHCCCCCCCEEEEECCHHH
Q ss_conf 12203565223578998997999999998873155589999996-------79999999983119998661999078678
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYE-------PALECAELLLQGVGKGWASRAYFSDNGST 472 (817)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~~~~~~~~~~-------~~~eLae~L~~~~~~~~~~~v~f~~SGse 472 (817)
-|+|..+ .|-- .+.|.+++.+.+..... ......+. ...+.-+.++++++...-+.++|+++.++
T Consensus 24 iYld~a~------~~~~-p~~v~~~~~~~~~~~~~-n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~ 95 (408)
T d1t3ia_ 24 VYLDNAA------TSQK-PRAVLEKLMHYYENDNA-NVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATE 95 (408)
T ss_dssp EECBTTT------CCCC-CHHHHHHHHHHHHHTCC-CC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHH
T ss_pred EEEECCC------CCCC-CHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHH
T ss_conf 9831851------1579-99999999999986689-87731519999999999999999999839898213775053078
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999853024410002487764555520899981874478642111248998877677887568765558984
Q 003472 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (817)
Q Consensus 473 AvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~ 552 (817)
++..++... ....-+.| ..|+.....|++............ |.
T Consensus 96 ~~n~~~~~~-~~~~~~~g----------------~~il~s~~e~~s~~~~~~~~~~~~--------------g~------ 138 (408)
T d1t3ia_ 96 AINLVAYSW-GMNNLKAG----------------DEIITTVMEHHSNLVPWQMVAAKT--------------GA------ 138 (408)
T ss_dssp HHHHHHHHT-HHHHCCTT----------------CEEEEETTCCGGGTHHHHHHHHHH--------------CC------
T ss_pred HHHHHHHHC-CCCCCCCC----------------CEEEEECCCCHHHHHHHHHHHHCC--------------CC------
T ss_conf 988887641-00226899----------------889850354411211344433026--------------82------
Q ss_pred CCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 22247621214871111000234444456730122102691168999999999997419998888807999994533468
Q 003472 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (817)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~ 632 (817)
....++.+... . .+ .+.++..+. .++..|.+--+ +..
T Consensus 139 -----~v~~~~~~~~~------------~---------~~--------~~~l~~~~~--------~~t~lv~i~~~-~~~ 175 (408)
T d1t3ia_ 139 -----VLKFVQLDEQE------------S---------FD--------LEHFKTLLS--------EKTKLVTVVHI-SNT 175 (408)
T ss_dssp -----EEEEECBCTTS------------S---------BC--------HHHHHHHCC--------TTEEEEEEESB-CTT
T ss_pred -----EEEEEECCCCC------------C---------CC--------HHHHHHCCC--------CCCEEEEEECC-CCC
T ss_conf -----57654201233------------2---------00--------777642248--------99669999655-544
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCEEECC--CCCCCCCCCCEEEEECHHHHHH
Q ss_conf 97312898899999999762399399851100656556310230008999622004--3347888751189822577741
Q 003472 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDS 710 (817)
Q Consensus 633 gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDIitlg--K~LggGy~Plsavl~~~~i~e~ 710 (817)
.|...| ++++.++|+++|+++++|=+|+ +|..- .-.+. ..+|+++++ | ..|+ --++++..+++....
T Consensus 176 tG~~~p----~~~i~~~~~~~g~~~ivDa~q~-~g~~~--id~~~--~~~D~~~~s~hK-~~gp-~G~g~l~v~~~~~~~ 244 (408)
T d1t3ia_ 176 LGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHYP--LDVQL--IDCDWLVASGHK-MCAP-TGIGFLYGKEEILEA 244 (408)
T ss_dssp TCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHHH--HTCSEEEEEGGG-TTSC-TTCEEEEECHHHHHH
T ss_pred CCCCCC----HHHHHHHHHCCCCEEEECCCEE-CCCCC--CCCCC--CCCCEEEECCCC-CCCC-CCCCCCCCCHHHHHC
T ss_conf 433580----8987656521473045313010-46432--24334--678648861432-3578-874111210334530
Q ss_pred HCCC---CCCCE-----------EECCC-CCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 1288---86530-----------00015-899878999999999999519670120899999999999999999987399
Q 003472 711 FVGD---SKLKA-----------LLHGH-SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 711 ~~~~---~~~~~-----------~~h~~-T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (817)
.... ..... ..+.. +-+.+..++++..++++++.+-+. +++.+....+.+++. +.+...+
T Consensus 245 ~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~-~~i~~~~~~l~~~l~----~~~~~~~ 319 (408)
T d1t3ia_ 245 MPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGM-ENIHNYEVELTHYLW----QGLGQIP 319 (408)
T ss_dssp SCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHH----HHHHTCT
T ss_pred CCCEECCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHH----HHHCCCC
T ss_conf 89650698543444555555577335434785789999999999999997087-999999998776776----6522576
Q ss_pred CCCEE------EEEEEEEEEEEEC
Q ss_conf 92419------7551699999710
Q 003472 776 TVQRV------VALGTLCAIELQA 793 (817)
Q Consensus 776 ~I~~V------rG~Glm~gIel~~ 793 (817)
.+.-+ .-.+.+..+.+..
T Consensus 320 ~~~~~~~~~~~~~~~~iv~f~~~~ 343 (408)
T d1t3ia_ 320 QLRLYGPNPKHGDRAALASFNVAG 343 (408)
T ss_dssp TEEEESCCGGGSCBCSEEEEEETT
T ss_pred CCCCCCCCCCCCCCCEEEEEEECC
T ss_conf 423468884446754189999589
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.79 E-value=4.7e-06 Score=53.25 Aligned_cols=304 Identities=11% Similarity=0.023 Sum_probs=149.3
Q ss_pred CHHHHHHHHHHHHHCCCCCC--CCCCCHHHHHHHHHHHHHCCC----C---CCCEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf 97999999998873155589--999996799999999831199----9---86619990786789999999999985302
Q 003472 418 QIELARDMGYTAARFGHVMF--PENVYEPALECAELLLQGVGK----G---WASRAYFSDNGSTAIEIALKMAFRKFSFD 488 (817)
Q Consensus 418 ~p~I~~Ai~~q~~~~~~~~~--~~~~~~~~~eLae~L~~~~~~----~---~~~~v~f~~SGseAvE~ALKlA~r~~t~~ 488 (817)
.+.+++++++.++....... ..+..+....+|+.+.+.... + .-+.++.++++++|...+++.. -.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l-----~~ 123 (412)
T d1bw0a_ 49 SAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAI-----CD 123 (412)
T ss_dssp CHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHH-----CC
T ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHH-----HC
T ss_conf 2999999999862877778899868899999999999975475435687888886999446222025666543-----11
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHH
Q ss_conf 44100024877645555208999818744786421112489988776778875687655589842224762121487111
Q 003472 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWL 568 (817)
Q Consensus 489 ~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~ 568 (817)
.| ..|+..+-+|.+....+ ...|.. ...++....
T Consensus 124 ~G----------------d~Vlv~~P~y~~~~~~~-~~~G~~----------------------------~~~v~~~~~- 157 (412)
T d1bw0a_ 124 AG----------------DYALVPQPGFPHYETVC-KAYGIG----------------------------MHFYNCRPE- 157 (412)
T ss_dssp TT----------------CEEEEEESCCTHHHHHH-HHTTCE----------------------------EEEEEEEGG-
T ss_pred CC----------------CCEEEEECCCHHHHHHH-HCCCCC----------------------------CCCCCCCCC-
T ss_conf 44----------------32046411330144455-405864----------------------------222332223-
Q ss_pred HHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 10002344444567301221026911689999999999974199988888079999945334689731289889999999
Q 003472 569 YSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVK 648 (817)
Q Consensus 569 ~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~ 648 (817)
++ + ..+ .+.+++... ....+.++.-|- .=.|... +.+.++++.+
T Consensus 158 ------------~~----~--~~~--------~~~l~~~~~-------~~~~~~~l~np~--NPtG~~~-~~~~~~~i~~ 201 (412)
T d1bw0a_ 158 ------------ND----W--EAD--------LDEIRRLKD-------DKTKLLIVTNPS--NPCGSNF-SRKHVEDIVR 201 (412)
T ss_dssp ------------GT----T--EEC--------HHHHHHHCC-------TTEEEEEEESSC--TTTCCCC-CHHHHHHHHH
T ss_pred ------------CC----C--CHH--------HHHHHHHHH-------CCCCCCCCCCCC--CCCCCCC-HHHHCCCCCC
T ss_conf ------------33----3--124--------678876531-------112222223343--3333220-1443023211
Q ss_pred HHHHCCCCEEEEEEEECCCCCCCCCHH--HHC-CC--CCCEE---ECCCCCCC-CCCCCEEEEECHHHHHHHCCCCCCCE
Q ss_conf 976239939985110065655631023--000-89--99622---00433478-88751189822577741128886530
Q 003472 649 ECQNRKIPVIFDEVFTGFWRLGVETTA--DLL-GC--VPDIA---CYGKLLTG-GVIPLAATLATNAVFDSFVGDSKLKA 719 (817)
Q Consensus 649 lc~~~gilLI~DEV~TGfGRtG~~~a~--e~~-gv--~PDIi---tlgK~Lgg-Gy~Plsavl~~~~i~e~~~~~~~~~~ 719 (817)
+|++|++++|.||++..|.-.|..... ... .. ....+ .+||.++. | +-+|.+++.++..+....-.. ..
T Consensus 202 ~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G-~RvG~~~~~~~~~~~~~~~~~-~~ 279 (412)
T d1bw0a_ 202 LAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPG-WRLGWLLYVDPHGNGPSFLEG-LK 279 (412)
T ss_dssp HHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGG-GCCEEEEEECTTCSCHHHHHH-HH
T ss_pred CCCCCCEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHCCHHHHHH-HC
T ss_conf 2223776665202178754478887641000012234331131155575575687-774320124043300355555-40
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-EEEEEEEEECCCCCC
Q ss_conf 0001589987899999999999951967012089999999999999999998739992419755-169999971079777
Q 003472 720 LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNA 798 (817)
Q Consensus 720 ~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~-Glm~gIel~~~~~~~ 798 (817)
-....+.+..+...+++.+.+. ... .+.+.+..+.+.+.. +.+.+.+.+.+.+.-+... |.++-+.+.... ..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~r-~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~-~~ 353 (412)
T d1bw0a_ 280 RVGMLVCGPCTVVQAALGEALL--NTP--QEHLDQIVAKIEESA-MYLYNHIGECIGLAPTMPRGAMYLMSRIDLEK-YR 353 (412)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHH--SSC--HHHHHHHHHHHHHHH-HHHHHHHTTSTTEEECCCCBTTEEEEEECGGG-BS
T ss_pred CCCCCCCCCCHHHHHHCCCCCC--CCC--CCCCCCCCCHHHHHH-HHHHHHHHHHCCCEECCCCCCEEEEEECCHHH-CC
T ss_conf 3455334775034320222233--322--233332211027899-99999998734925437897149999578234-37
Q ss_pred CCCHHHHHHHHHHH-CCCC
Q ss_conf 71129999999998-2989
Q 003472 799 GYCLIELFLYNFLT-TGMH 816 (817)
Q Consensus 799 ~~~~~~~~~~~~l~-~G~~ 816 (817)
+......|..++++ +||.
T Consensus 354 ~~~~~~~~~~~ll~~~gV~ 372 (412)
T d1bw0a_ 354 DIKTDVEFFEKLLEEENVQ 372 (412)
T ss_dssp SCCSHHHHHHHHHHHHCEE
T ss_pred CCCCHHHHHHHHHHHCCEE
T ss_conf 8889999999999869999
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=98.76 E-value=4.3e-06 Score=53.46 Aligned_cols=280 Identities=11% Similarity=0.063 Sum_probs=149.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 97999999998873155589999996799999999831199986619990786789999999999985302441000248
Q 003472 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (817)
Q Consensus 418 ~p~I~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~ 497 (817)
..+-.+++.+.++...... ..-+...+|++++++.++. ..+.+++||+.|.+.|++.+ . . +.
T Consensus 12 ~~~~~~~~~~~l~~g~~~~---~~g~~v~~fE~~~a~~~g~---~~~v~~~SGt~Al~lal~~l-~-~--~~-------- 73 (384)
T d1b9ha_ 12 DDAERNGLVRALEQGQWWR---MGGDEVNSFEREFAAHHGA---AHALAVTNGTHALELALQVM-G-V--GP-------- 73 (384)
T ss_dssp CHHHHHHHHHHHHTSCCBT---TTCSHHHHHHHHHHHHTTC---SEEEEESCHHHHHHHHHHHT-T-C--CT--------
T ss_pred CHHHHHHHHHHHHCCCEEE---CCCHHHHHHHHHHHHHHCC---CEEEEECCHHHHHHHHHHHC-C-C--CC--------
T ss_conf 9999999999997399465---6898999999999999796---93999678899999999984-9-9--98--------
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCC
Q ss_conf 77645555208999818744786421112489988776778875687655589842224762121487111100023444
Q 003472 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (817)
Q Consensus 498 ~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~ 577 (817)
...||.-.-+|... ..++...+.. + .+.|. .|..
T Consensus 74 --------gdeVi~p~~t~~a~-~~ai~~~g~~--------p------~~~d~-------------~~~~---------- 107 (384)
T d1b9ha_ 74 --------GTEVIVPAFTFISS-SQAAQRLGAV--------T------VPVDV-------------DAAT---------- 107 (384)
T ss_dssp --------TCEEEEESSSCTHH-HHHHHHTTCE--------E------EEECB-------------CTTT----------
T ss_pred --------CCEEEEECCCCCCC-CCCCCCCCCC--------C------CCCCC-------------CCCC----------
T ss_conf --------89899814322322-1222222233--------2------11233-------------4444----------
Q ss_pred CCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 44567301221026911689999999999974199988888079999945334689731289889999999976239939
Q 003472 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (817)
Q Consensus 578 ~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilL 657 (817)
++ -| .+.+++.+ ..++.+|++..+ .| .... +..++++|+++++.+
T Consensus 108 --~~---------~d--------~~~~~~~i--------~~~tk~i~~~~~-~g---~~~d----~~~i~~~~~~~~i~l 152 (384)
T d1b9ha_ 108 --YN---------LD--------PEAVAAAV--------TPRTKVIMPVHM-AG---LMAD----MDALAKISADTGVPL 152 (384)
T ss_dssp --CC---------BC--------HHHHHHHC--------CTTEEEECCBCG-GG---CCCC----HHHHHHHHHHHTCCB
T ss_pred --CC---------CC--------HHHHCCCC--------CCCCCCCCCCCC-CC---CCCC----CCCCHHHHHHHHHHH
T ss_conf --35---------66--------54410200--------233322223333-22---2334----431102223333565
Q ss_pred EEEEEEECCCCCCCCCHHHHCCCCCCEEEC----CCCCCCCCCCCEEEEEC-HHHHHHHCC---C--C---CC---CEEE
Q ss_conf 985110065655631023000899962200----43347888751189822-577741128---8--8---65---3000
Q 003472 658 IFDEVFTGFWRLGVETTADLLGCVPDIACY----GKLLTGGVIPLAATLAT-NAVFDSFVG---D--S---KL---KALL 721 (817)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv~PDIitl----gK~LggGy~Plsavl~~-~~i~e~~~~---~--~---~~---~~~~ 721 (817)
|-|-.|+ +|-. +.-...|-..|+.++ .|.++.|- =|+++++ +++++.... . . .. ..-.
T Consensus 153 ieD~a~a-~ga~---~~g~~~g~~g~~~~~Sf~~~K~i~~g~--GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 226 (384)
T d1b9ha_ 153 LQDAAHA-HGAR---WQGKRVGELDSIATFSFQNGKLMTAGE--GGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKI 226 (384)
T ss_dssp CEECTTC-TTCE---ETTEEGGGSSSCEEEECCTTSSSCSSS--CEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCS
T ss_pred HHHHCEE-CCCC---CCCEECCCCCCCCEECCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 5310403-3600---489836755200000245554344334--312432249999988999856898766664323123
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCC-------EEEEEEEEEEEEEECC
Q ss_conf 015899878999999999999519670120899999999999999999987399924-------1975516999997107
Q 003472 722 HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ-------RVVALGTLCAIELQAA 794 (817)
Q Consensus 722 h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~-------~VrG~Glm~gIel~~~ 794 (817)
.|+.+--+++.+|.+++-|+.+++ ..++-+....++.+ .++..+.+. ..+....+..+.+...
T Consensus 227 ~G~n~rms~l~Aaig~~qL~~ld~------~~~~R~~~~~~y~~----~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 296 (384)
T d1b9ha_ 227 AGSNMRLNEFSASVLRAQLARLDE------QIAVRDERWTLLSR----LLGAIDGVVPQGGDVRADRNSHYMAMFRIPGL 296 (384)
T ss_dssp CCCBCBCBHHHHHHHHHHHTTHHH------HHHHHHHHHHHHHH----HHHTSTTCEECCCCTTCCBCCCSEEEEECTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCC------CHHHHHHHHHHHHH----HHHCCCCCCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 566322353012133334321132------11234334466666----64225666443222222222333310001000
Q ss_pred CCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 9777711299999999982989
Q 003472 795 GCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 795 ~~~~~~~~~~~~~~~~l~~G~~ 816 (817)
..+....++..+.++||-
T Consensus 297 ----~~~~Rd~l~~~L~~~GI~ 314 (384)
T d1b9ha_ 297 ----TEERRNALVDRLVEAGLP 314 (384)
T ss_dssp ----CHHHHHHHHHHHHHTTCC
T ss_pred ----CCCCHHHHHHHHHHCCCC
T ss_conf ----222599999999987998
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.70 E-value=1.4e-06 Score=56.57 Aligned_cols=243 Identities=14% Similarity=0.104 Sum_probs=135.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 99967999999998311999866199907867899999999999853024410002487764555520899981874478
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++....|+++|+++-+ .+.++.++||-.|+- |+- + . -+.| ..||+.+..|.|.
T Consensus 46 ~~nPt~~~le~~la~LE~---~~~a~~fsSGMaAis-all-~---l-l~~G----------------d~vv~~~~~Yg~t 100 (380)
T d1ibja_ 46 SGNPTRDALESLLAKLDK---ADRAFCFTSGMAALS-AVT-H---L-IKNG----------------EEIVAGDDVYGGS 100 (380)
T ss_dssp TCCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHH-HHH-T---T-SCTT----------------CEEEEESSCCHHH
T ss_pred CCCHHHHHHHHHHHHHCC---CCEEEEHHHHHHHHH-HHH-H---H-HCCC----------------CEEEEEECCCCCC
T ss_conf 988689999999999719---861886031999999-999-8---6-2799----------------8799974033554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHH
Q ss_conf 64211124899887767788756876555898422247621214871111000234444456730122102691168999
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (817)
..-+... ....|.. +.|-|. . .
T Consensus 101 -~~l~~~~-------------~~~~gi~------------------------------~~~~d~-------~---~---- 122 (380)
T d1ibja_ 101 -DRLLSQV-------------VPRSGVV------------------------------VKRVNT-------T---K---- 122 (380)
T ss_dssp -HHHHHHT-------------SGGGTCE------------------------------EEEECT-------T---S----
T ss_pred -CCHHHHH-------------HCCCCCC------------------------------CCCCCC-------C---H----
T ss_conf -0122221-------------1045421------------------------------223575-------1---6----
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCC
Q ss_conf 99999999741999888880799999453346897312898899999999762399399851100656556310230008
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.+. .+..+|++|.. ..-..-++. +++++++|+++|+++|+|....+ .+.++...
T Consensus 123 -~~~~~~ai~--------~~t~li~~Etp-sNP~l~v~D----i~~i~~iA~~~g~~~vVDnT~at------P~~~~Pl~ 182 (380)
T d1ibja_ 123 -LDEVAAAIG--------PQTKLVWLESP-TNPRQQISD----IRKISEMAHAQGALVLVDNSIMS------PVLSRPLE 182 (380)
T ss_dssp -HHHHHHHCC--------SSEEEEEECSS-CTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTC------TTTCCGGG
T ss_pred -HHHHHHHHC--------CCCCEEEECCC-CCCCCCCCC----HHHHHHHHHHCCCEEEEECCCCC------CCCCCCCC
T ss_conf -788777750--------67618996142-443223445----89999999875980896243004------30025545
Q ss_pred CCCCEE--ECCCCCCC-CCCCCEEEEEC-HHHHHHHCCCCCCCEEECCCCCC--CCHHHHHHHHHHHHHHCCCCCHHCHH
Q ss_conf 999622--00433478-88751189822-57774112888653000015899--87899999999999951967012089
Q 003472 680 CVPDIA--CYGKLLTG-GVIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYS--AHALGCAAAAKSIKWFKDPQTNHNII 753 (817)
Q Consensus 680 v~PDIi--tlgK~Lgg-Gy~Plsavl~~-~~i~e~~~~~~~~~~~~h~~T~~--gnPla~Aaala~L~ile~~~~~~~l~ 753 (817)
.-.||+ ...|-++| |=+-.|+++.+ +++.+.+... -.+++ .+|..|-..+..|+-+.- ..++..
T Consensus 183 ~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~--------~~~~G~~l~p~~a~ll~rgl~Tl~l--Rm~~~~ 252 (380)
T d1ibja_ 183 LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFL--------QNSEGSGLAPFDCWLCLRGIKTMAL--RIEKQQ 252 (380)
T ss_dssp TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHH--------HHHTTCBCCHHHHHHHHHHHTTHHH--HHHHHH
T ss_pred CCCCEEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHH--------CCCCCCCCCHHHHHHHHHCCHHHHH--HHHHHH
T ss_conf 589899960652025666755443334412677778763--------0466773787779999842314455--388898
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEE------------------EEEEEEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 99999999999999999873999241975------------------516999997107977771129999999
Q 003472 754 PERRILRELWDLELIQQISSHRTVQRVVA------------------LGTLCAIELQAAGCNAGYCLIELFLYN 809 (817)
Q Consensus 754 ~~~~~l~~~l~~~l~~~~~~~p~I~~VrG------------------~Glm~gIel~~~~~~~~~~~~~~~~~~ 809 (817)
+|+..+ -+.+++||.|..|.- .|.|+.+++.+. +....|+..
T Consensus 253 ~nA~~l--------A~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~~------~~a~~f~d~ 312 (380)
T d1ibja_ 253 ENARKI--------AMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSV------ALSKHLVET 312 (380)
T ss_dssp HHHHHH--------HHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCH------HHHHHHHHH
T ss_pred HHHHHH--------HHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH------HHHHHHHHH
T ss_conf 888999--------999973898669960564568642112224565421111111279------999999983
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=3.8e-06 Score=53.83 Aligned_cols=247 Identities=12% Similarity=0.097 Sum_probs=139.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 99967999999998311999866199907867899999999999853024410002487764555520899981874478
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++....|+++|+++-+ .+.++.++||-.|+-+++-... +. ...||+.+..|.|.
T Consensus 47 ~~nPt~~~le~~la~LEg---g~~a~~~sSGMaAi~~~l~~l~-----~~----------------gd~vv~~~~~yg~t 102 (384)
T d1cs1a_ 47 RGNPTRDVVQRALAELEG---GAGAVLTNTGMSAIHLVTTVFL-----KP----------------GDLLVAPHDCYGGS 102 (384)
T ss_dssp TCCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHC-----CT----------------TCEEEEETTCCHHH
T ss_pred CCCHHHHHHHHHHHHHHC---CCCEEEECCHHHHHHHHHHHCC-----CC----------------CCEECCCCCCCCHH
T ss_conf 988789999999999829---9706884372799999986314-----45----------------55001346520024
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHH
Q ss_conf 64211124899887767788756876555898422247621214871111000234444456730122102691168999
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (817)
.......-. .+ +. .+ .|-|. .|
T Consensus 103 ~~~~~~~~~--~~------------g~--------------~~----------------~~~d~-------~d------- 124 (384)
T d1cs1a_ 103 YRLFDSLAK--RG------------CY--------------RV----------------LFVDQ-------GD------- 124 (384)
T ss_dssp HHHHHHHHT--TT------------SC--------------EE----------------EEECT-------TC-------
T ss_pred HHHHHHHHC--CC------------CC--------------CC----------------CCCCC-------CC-------
T ss_conf 666542112--23------------33--------------22----------------23567-------88-------
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCC
Q ss_conf 99999999741999888880799999453346897312898899999999762399399851100656556310230008
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.++..+. .+..+|++|.. ..-.--++. ++++.++|+++|+++|+|..... .+.+.-+.
T Consensus 125 -~~~~~~~~~--------~~t~~v~~Esp-sNP~l~v~D----i~~i~~ia~~~g~~~vVDNT~at------P~~~~Pl~ 184 (384)
T d1cs1a_ 125 -EQALRAALA--------EKPKLVLVESP-SNPLLRVVD----IAKICHLAREVGAVSVVDNTFLS------PALQNPLA 184 (384)
T ss_dssp -HHHHHHHHH--------TCCSEEEEECS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTC------TTTCCGGG
T ss_pred -HHHHHHHCC--------CCCCEEEEECC-CCCCCEECC----HHHHHHHHHHCCCEEEEECCCCC------CCCCCCCC
T ss_conf -799986216--------66627997145-665301045----78875545414867997155347------45466644
Q ss_pred CCCCEE--ECCCCCCC-CCCCCEEEEECH-HHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHH
Q ss_conf 999622--00433478-887511898225-77741128886530000158998789999999999995196701208999
Q 003472 680 CVPDIA--CYGKLLTG-GVIPLAATLATN-AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (817)
Q Consensus 680 v~PDIi--tlgK~Lgg-Gy~Plsavl~~~-~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~ 755 (817)
.-.||+ ...|-++| |=+-.|+++.+. ++.+.+.... ...|. ..+|..|-..+..|+-+.- ..++..++
T Consensus 185 ~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~----~~~G~--~~~p~~a~ll~rgL~TL~l--Rm~~~~~n 256 (384)
T d1cs1a_ 185 LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWA----NNIGV--TGGAFDSYLLLRGLRTLVP--RMELAQRN 256 (384)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHH----HHHTC--BCCHHHHHHHHHHHTTHHH--HHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH----HHHHH--CCCCCCHHHHHHCCCHHHH--HHHHHHHH
T ss_conf 6888999806300366777444334578266542001122----11220--2450038999612111478--99899999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEE------------------EEEEEEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 999999999999999873999241975------------------516999997107977771129999999
Q 003472 756 RRILRELWDLELIQQISSHRTVQRVVA------------------LGTLCAIELQAAGCNAGYCLIELFLYN 809 (817)
Q Consensus 756 ~~~l~~~l~~~l~~~~~~~p~I~~VrG------------------~Glm~gIel~~~~~~~~~~~~~~~~~~ 809 (817)
+..+ -+.++.||.|..|.- .|.|+.+++.... +....|+.+
T Consensus 257 A~~l--------A~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~-----~~a~~f~~~ 315 (384)
T d1cs1a_ 257 AQAI--------VKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDE-----QTLRRFLGG 315 (384)
T ss_dssp HHHH--------HHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCH-----HHHHHHHHT
T ss_pred HHHH--------HHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCHH-----HHHHHHHHH
T ss_conf 9999--------9964458864466412233014899987506898612687524669-----999999983
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=98.57 E-value=7.5e-07 Score=58.29 Aligned_cols=196 Identities=14% Similarity=0.031 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 97999999998873155589999996799999999831199986619990786789999999999985302441000248
Q 003472 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (817)
Q Consensus 418 ~p~I~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~ 497 (817)
+++|.+|+. .........-..+...+..+.|.++++-+....++|+.||++++++++....
T Consensus 30 ~~~Vl~am~----~~~~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~--------------- 90 (377)
T d1vjoa_ 30 HPSVLQAMN----VSPVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAV--------------- 90 (377)
T ss_dssp CHHHHHHHS----SCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC---------------
T ss_pred CHHHHHHHC----CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCC---------------
T ss_conf 999999757----6888978889999999999999998599998099984848999999998433---------------
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCC
Q ss_conf 77645555208999818744786421112489988776778875687655589842224762121487111100023444
Q 003472 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (817)
Q Consensus 498 ~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~ 577 (817)
....+++...+++++............. ...+..+
T Consensus 91 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~------------ 125 (377)
T d1vjoa_ 91 ------EPGDVVLIGVAGYFGNRLVDMAGRYGAD---------------------------VRTISKP------------ 125 (377)
T ss_dssp ------CTTCEEEEEESSHHHHHHHHHHHHTTCE---------------------------EEEEECC------------
T ss_pred ------CCCCCCCEEEECHHHHHHHHHHHHHCCC---------------------------CCCCCCC------------
T ss_conf ------4344420242001344444454320311---------------------------1001357------------
Q ss_pred CCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 44567301221026911689999999999974199988888079999945334689731289889999999976239939
Q 003472 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (817)
Q Consensus 578 ~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilL 657 (817)
+++. .+ . ...+..... .....+.+--+ ..+.|...+ ++++.++|+++|+++
T Consensus 126 --~~~~-------~~--~------~~~~~~~~~-------~~~~~v~~~~~-~~~tg~~~~----i~~i~~~~~~~g~~~ 176 (377)
T d1vjoa_ 126 --WGEV-------FS--L------EELRTALET-------HRPAILALVHA-ETSTGARQP----LEGVGELCREFGTLL 176 (377)
T ss_dssp --TTCC-------CC--H------HHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHHHTCEE
T ss_pred --CCCC-------CC--C------HHHHHHHHC-------CCCEEEEEEEE-ECCCEEEEC----HHHHHHHHHHCCCEE
T ss_conf --7874-------32--0------245666605-------76403455542-023346305----055433455226438
Q ss_pred EEEEEEECCCCCCCCCHHHHCCCCCCEEECC--CCCCCCCCCCEEEEECHHHHHHHC
Q ss_conf 9851100656556310230008999622004--334788875118982257774112
Q 003472 658 IFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFV 712 (817)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv~PDIitlg--K~LggGy~Plsavl~~~~i~e~~~ 712 (817)
++|.+|+ +|.. ..-.+ ....|+++++ |.++++ --++.+..+++..+...
T Consensus 177 ~vDa~~~-~g~~--~~~~~--~~~~d~~~~s~~K~~~gp-~g~~~~~~~~~~~~~~~ 227 (377)
T d1vjoa_ 177 LVDTVTS-LGGV--PIFLD--AWGVDLAYSCSQKGLGCS-PGASPFTMSSRAIEKLQ 227 (377)
T ss_dssp EEECTTT-TTTS--CCCTT--TTTCSEEECCSSSTTCSC-SSCEEEEECHHHHHHHH
T ss_pred EEECCHH-HHHH--HHCCC--CCCCCEEEECCCCCCCCC-CEEEEECCHHHHHHHHH
T ss_conf 9960002-3333--21012--456505640212440589-77997413266776520
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=98.57 E-value=2.1e-05 Score=49.06 Aligned_cols=255 Identities=16% Similarity=0.116 Sum_probs=133.8
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 99999998311999866199907867899999999999853024410002487764555520899981874478642111
Q 003472 446 LECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME 525 (817)
Q Consensus 446 ~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~gals 525 (817)
.+|.++|++..+-. -+.++.++++++|...+++.. .. ++...|+...-+|...... ..
T Consensus 59 ~~Lr~~ia~~~gv~-pe~I~it~Gs~eai~~~~~~~-----~~---------------pgd~~Vl~~~P~y~~~~~~-~~ 116 (354)
T d1fg7a_ 59 KAVIENYAQYAGVK-PEQVLVSRGADEGIELLIRAF-----CE---------------PGKDAILYCPPTYGMYSVS-AE 116 (354)
T ss_dssp HHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHHHHH-----CC---------------TTTCEEEECSSSCTHHHHH-HH
T ss_pred HHHHHHHHHHHCCC-HHHEEECCCCHHHHHHHHHHH-----HC---------------CCCCCCCCCCCCCCCCHHH-HH
T ss_conf 99999999984978-678553357248888888775-----31---------------2333345663223111011-21
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 24899887767788756876555898422247621214871111000234444456730122102691168999999999
Q 003472 526 AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYIS 605 (817)
Q Consensus 526 lt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le 605 (817)
..+... ..++..+.+ .-| .+.++
T Consensus 117 ~~g~~v----------------------------~~~~~~~~~---------------------~~d--------~~~l~ 139 (354)
T d1fg7a_ 117 TIGVEC----------------------------RTVPTLDNW---------------------QLD--------LQGIS 139 (354)
T ss_dssp HHTCEE----------------------------EECCCCTTS---------------------CCC--------HHHHH
T ss_pred CCCCEE----------------------------ECCCCCCCC---------------------CCC--------HHHHH
T ss_conf 268422----------------------------104533333---------------------310--------11100
Q ss_pred HHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCEE
Q ss_conf 99741999888880799999453346897312898899999999762399399851100656556310230008999622
Q 003472 606 QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA 685 (817)
Q Consensus 606 ~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDIi 685 (817)
.. ..+..++++-+- ..-.|.+. +...++.+.+.|+ ++.++|+||...-|..-.. ........+..+
T Consensus 140 ~~---------~~~~~~v~~~~p-nNPtG~~~-~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~--~~~~~~~~~~~i 205 (354)
T d1fg7a_ 140 DK---------LDGVKVVYVCSP-NNPTGQLI-NPQDFRTLLELTR-GKAIVVADEAYIEFCPQAS--LAGWLAEYPHLA 205 (354)
T ss_dssp TS---------CTTEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGC--SGGGTTTCTTEE
T ss_pred HC---------CCCCCEEECCCC-CCCCEEEE-EECCCCCCCCCCC-CCCCCCCCCCCHHHCCCCC--CCHHHCCCCCCE
T ss_conf 00---------356513303478-75331575-2000233212333-4555445653011103443--310100454663
Q ss_pred ---ECCCCCC-CCCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHH
Q ss_conf ---0043347-888751189822577741128886530000158998789999999999995196701208999999999
Q 003472 686 ---CYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRE 761 (817)
Q Consensus 686 ---tlgK~Lg-gGy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~ 761 (817)
++||.++ .| +-+|.+++.+++++.+.. ....+..+..+..++.+++..-.. .....+.+.+.+
T Consensus 206 v~~S~SK~~~laG-lRiGy~i~~~~~i~~l~~--------~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~ 272 (354)
T d1fg7a_ 206 ILRTLSKAFALAG-LRCGFTLANEEVINLLMK--------VIAPYPLSTPVADIAAQALSPQGI----VAMRERVAQIIA 272 (354)
T ss_dssp EEEESSSTTCCGG-GCCEEEEECHHHHHHHHH--------HSCSSCSCHHHHHHHHHHTSHHHH----HHHHHHHHHHHH
T ss_pred EEECCCCCCCCCC-CCCCCCCCCCHHHHHHHH--------HCCCCCHHHHHHHHHHHHHHHHCC----CCCCCCCHHHHH
T ss_conf 8867763467775-541124356303456553--------157531036778888998751010----001111013566
Q ss_pred HHHHHHHHHHHCCCCCCEEEE-EEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 999999999873999241975-5169999971079777711299999999982989
Q 003472 762 LWDLELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 762 ~l~~~l~~~~~~~p~I~~VrG-~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~G~~ 816 (817)
. ++.+.+.+.+.+.+..+.. .|.++-+++.+ ...+...++++||+
T Consensus 273 ~-r~~l~~~l~~~~~~~~~~p~~~~f~~~~~~~---------~~~~~~~L~~~gIl 318 (354)
T d1fg7a_ 273 E-REYLIAALKEIPCVEQVFDSETNYILARFKA---------SSAVFKSLWDQGII 318 (354)
T ss_dssp H-HHHHHHHHHHSTTEEEECCCSSSEEEEEETT---------HHHHHHHHHHTTEE
T ss_pred H-HHHHHHHHHHCCCCCEECCCCCEEEEEECCC---------HHHHHHHHHHCCCE
T ss_conf 7-7899999986799643479975399996799---------99999999978939
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=98.45 E-value=2.1e-06 Score=55.41 Aligned_cols=91 Identities=11% Similarity=0.141 Sum_probs=53.0
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH----HCCCCEEEEEECCCCCCC-
Q ss_conf 777789995899877878999703467531799999997599882999999999999----579928999991589999-
Q 003472 219 KMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK----LRGYDVVAVVFEDHGLVN- 293 (817)
Q Consensus 219 ~~~d~~iiEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~----~~~~~v~gvi~N~~~~~~- 293 (817)
..+|+++|...+++.. ......++...---+++|+....-++.........+. ..+.++.|+|+|+.....
T Consensus 114 ~~~D~viiD~p~~~~~----~~~~~~~~~~~ad~vliv~~~~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~ 189 (269)
T d1cp2a_ 114 DDLDYVFYDVLGDVVC----GGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANE 189 (269)
T ss_dssp TTCSEEEEEEECSSCS----TTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCC
T ss_pred CCCCEEEECCCCCCCH----HHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCEEEEEECCCCC
T ss_conf 5688898646775225----489999986215733321340466777899999999864034520013348766627775
Q ss_pred HHH---HHHHHCCCCCEEE-CCCCCC
Q ss_conf 798---9985308996986-599999
Q 003472 294 EVP---LMSYLRNRVPVLV-LPPLPQ 315 (817)
Q Consensus 294 ~~~---l~~~~~~~~pvlg-ip~~~~ 315 (817)
.+. +.+.+ +.|+++ ||+.+.
T Consensus 190 ~~~~~~~~~~~--~~~~~~~IP~d~~ 213 (269)
T d1cp2a_ 190 YELLDAFAKEL--GSQLIHFVPRSPM 213 (269)
T ss_dssp HHHHHHHHHHH--TCCEEEEECCCHH
T ss_pred CCHHHHHHHHC--CCEEEEEEECCHH
T ss_conf 10113567662--9727999916878
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=98.43 E-value=2e-05 Score=49.26 Aligned_cols=277 Identities=12% Similarity=0.103 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 79999999988731555899999967999999998311999866199907867899999999999853024410002487
Q 003472 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (817)
Q Consensus 419 p~I~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~ 498 (817)
.+-.+++.+.++..-++ .-+...+|+++|++.++. ..+.+++||+.|+..|++.. ... .
T Consensus 12 ~~~~~~v~~~l~~~~~~-----~G~~v~~fE~~~~~~~g~---k~ai~~~Sgt~Al~~al~al-~~~---~--------- 70 (371)
T d2fnua1 12 KEDKKAVLEVLNSKQLT-----QGKRSLLFEEALCEFLGV---KHALVFNSATSALLTLYRNF-SEF---S--------- 70 (371)
T ss_dssp HHHHHHHHHHHTSSCCS-----SSHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHS-SCC---C---------
T ss_pred HHHHHHHHHHHCCCCCC-----CCHHHHHHHHHHHHHHCC---CEEEEEECHHHHHHHHHHHH-CCC---C---------
T ss_conf 99999999998189866-----897799999999999782---93999826899999999995-445---7---------
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCC
Q ss_conf 76455552089998187447864211124899887767788756876555898422247621214871111000234444
Q 003472 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578 (817)
Q Consensus 499 ~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~ 578 (817)
..+..||.-.-+|-... .++..+|.. -.+.|.. ++
T Consensus 71 -----~~~~eVi~p~~t~~a~~-~ai~~~G~~--------------pv~vDi~-------------~~------------ 105 (371)
T d2fnua1 71 -----ADRNEIITTPISFVATA-NMLLESGYT--------------PVFAGIK-------------ND------------ 105 (371)
T ss_dssp -----TTSCEEEECSSSCTHHH-HHHHHTTCE--------------EEECCBC-------------TT------------
T ss_pred -----CCCCEEECCCCCCCCCC-EEEECCCCC--------------CCCCCCC-------------CC------------
T ss_conf -----99770520134433220-002205863--------------2123332-------------22------------
Q ss_pred CCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 45673012210269116899999999999741999888880799999453346897312898899999999762399399
Q 003472 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658 (817)
Q Consensus 579 ~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI 658 (817)
.+++. ..+++. -..++.||++=-+ .| .... +.+++++|+++|+.+|
T Consensus 106 ~~~~~------------------~~~~~~--------~~~~t~avi~vh~-~G---~~~~----~~~i~~~~~~~~i~lI 151 (371)
T d2fnua1 106 GNIDE------------------LALEKL--------INERTKAIVSVDY-AG---KSVE----VESVQKLCKKHSLSFL 151 (371)
T ss_dssp SSBCG------------------GGSGGG--------CCTTEEEEEEECG-GG---CCCC----HHHHHHHHHHHTCEEE
T ss_pred CCCCC------------------HHHHHH--------CCCHHHCCCCCCC-CC---CCCC----CCCCCCCCCCCCHHHC
T ss_conf 32210------------------123330--------4620000112344-56---5333----4532121102220011
Q ss_pred EEEEEECCCCCCCCCHHHHCCCCCCEEEC----CCCCCCCCCCCEEEEEC-HHHHHHHCC---CCCC-------CEEECC
Q ss_conf 85110065655631023000899962200----43347888751189822-577741128---8865-------300001
Q 003472 659 FDEVFTGFWRLGVETTADLLGCVPDIACY----GKLLTGGVIPLAATLAT-NAVFDSFVG---DSKL-------KALLHG 723 (817)
Q Consensus 659 ~DEV~TGfGRtG~~~a~e~~gv~PDIitl----gK~LggGy~Plsavl~~-~~i~e~~~~---~~~~-------~~~~h~ 723 (817)
-|-.|+ + |..+.....|-..|+.++ .|.++.|- =|+++++ +++++.+.. .+.. .....|
T Consensus 152 EDaaqa-~---Ga~~~~~~~G~~g~~~~~Sf~~~K~l~~g~--GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G 225 (371)
T d2fnua1 152 SDSSHA-L---GSEYQNKKVGGFALASVFSFHAIKPITTAE--GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIG 225 (371)
T ss_dssp EECTTC-T---TCEETTEETTSSSSEEEEECCTTSSSCCSS--CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCC
T ss_pred CCHHHC-C---CCEECCCCCCCCCCCCCCCCCCCCCCCCCC--CEEEEEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 314441-5---860103047864322233556653432015--4578762122200000012101122322222311256
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCC------EEEEEEEEEEEEEECCCCC
Q ss_conf 5899878999999999999519670120899999999999999999987399924------1975516999997107977
Q 003472 724 HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ------RVVALGTLCAIELQAAGCN 797 (817)
Q Consensus 724 ~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~------~VrG~Glm~gIel~~~~~~ 797 (817)
+.+--+.+.+|.+++.|+.+++ ..++-+....++. +.++..+.+. ..........+-+....
T Consensus 226 ~n~r~sel~Aaigl~qL~~l~~------~~~~R~~~~~~y~----~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 293 (371)
T d2fnua1 226 HNFRLNEIQSALGLSQLKKAPF------LMQKREEAALTYD----RIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKF-- 293 (371)
T ss_dssp CBCCCCHHHHHHHHHHHTTHHH------HHHHHHHHHHHHH----HHHTTCSSEEESGGGCSSCCCCSCEEEEECGGG--
T ss_pred CCCCCCCHHHHHHHHHHHHCCC------HHHHHHHHHHHHC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--
T ss_conf 5100331455555444321121------0334443310001----212223333332233333333333322222221--
Q ss_pred CCCCHHHHHHHHHHHCCC
Q ss_conf 771129999999998298
Q 003472 798 AGYCLIELFLYNFLTTGM 815 (817)
Q Consensus 798 ~~~~~~~~~~~~~l~~G~ 815 (817)
......++..+.++||
T Consensus 294 --~~~r~~~~~~L~~~gI 309 (371)
T d2fnua1 294 --FTCKKLILESLHKRGI 309 (371)
T ss_dssp --GGGHHHHHHHHHHTTE
T ss_pred --HHHHHHHHHHHHHCCC
T ss_conf --0679999999998799
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=98.42 E-value=2.2e-05 Score=48.99 Aligned_cols=232 Identities=12% Similarity=0.081 Sum_probs=132.0
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 99999983119998661999078678999999999998530244100024877645555208999818744786421112
Q 003472 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA 526 (817)
Q Consensus 447 eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galsl 526 (817)
.|+++++++-+ .+.++.++||-.|+-+|+.... +.| ..||+.+..|+|.....-..
T Consensus 2 aLE~~la~Leg---~~~a~~~sSGMaAi~~~l~~ll-----~~G----------------d~iv~~~~~Yg~t~~~~~~~ 57 (331)
T d1pffa_ 2 ALEGKIAKLEH---AEACAATASGMGAIAASVWTFL-----KAG----------------DHLISDDCLYGCTHALFEHQ 57 (331)
T ss_dssp HHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHC-----CTT----------------CEEEEESCCCHHHHHHHHTH
T ss_pred HHHHHHHHHHC---CCEEEEECCHHHHHHHHHHHHH-----CCC----------------CEEEEECCCCHHHHHHHHHH
T ss_conf 78999999859---9859997778999999999972-----999----------------99999289751799999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 48998877677887568765558984222476212148711110002344444567301221026911689999999999
Q 003472 527 QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ 606 (817)
Q Consensus 527 t~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~ 606 (817)
- +..|. . ++|-|.. | .+.+++
T Consensus 58 l--------------~~~gi--------------~----------------~~~~d~~-------d--------~~~~~~ 78 (331)
T d1pffa_ 58 L--------------RKFGV--------------E----------------VDFIDMA-------V--------PGNIEK 78 (331)
T ss_dssp H--------------HHTTC--------------E----------------EEEECTT-------S--------TTHHHH
T ss_pred H--------------HHCCE--------------E----------------EEEECCC-------C--------HHHHHH
T ss_conf 9--------------86595--------------8----------------9996454-------2--------366765
Q ss_pred HHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHH-HHHCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCEE
Q ss_conf 9741999888880799999453346897312898899999999-762399399851100656556310230008999622
Q 003472 607 NLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA 685 (817)
Q Consensus 607 ~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~l-c~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDIi 685 (817)
.++ +....|++|.. ..-...++. ++.+.++ ++++|+++|+|...++ .+.++....-.||+
T Consensus 79 ~i~--------~~t~~i~~Es~-~np~~~v~d----~~~~~~~~a~~~~~~~vVDnT~at------p~~~~pl~~GaDiV 139 (331)
T d1pffa_ 79 HLK--------PNTRIVYFETP-ANPTLKVID----IEDAVKQARKQKDILVIVDNTFAS------PILTNPLDLGVDIV 139 (331)
T ss_dssp TCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTH------HHHCCGGGGTCSEE
T ss_pred HCC--------CCCCEEEEECC-CCCCCCCCC----CHHHHHHHHCCCCCEEEEECCCCC------CCCCCCCCCCCCEE
T ss_conf 302--------43211332012-443112212----024555422036826986155235------30312555689889
Q ss_pred --ECCCCCCC-CCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHH
Q ss_conf --00433478-887511898225777411288865300001589987899999999999951967012089999999999
Q 003472 686 --CYGKLLTG-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILREL 762 (817)
Q Consensus 686 --tlgK~Lgg-Gy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~ 762 (817)
...|-++| |=.-.++++.+++.+....... .....|. ..+|..|...+..|+-+.- ..++..+|+..+.
T Consensus 140 v~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~--~~~~~G~--~l~p~~a~ll~rgl~Tl~~--Rm~~~~~nA~~lA-- 211 (331)
T d1pffa_ 140 VHSATKYINGHTDVVAGLVCSRADIIAKVKSQG--IKDITGA--IISPHDAWLITRGTLTLDM--RVKRAAENAQKVA-- 211 (331)
T ss_dssp EEETTTTTSSSSSCCCEEEEECHHHHHHHHHTC--CCCCCCC--CCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--
T ss_pred EECCHHHCCCCCCCCCCCCCCCCCCHHHHHHHH--HHHCCCC--CCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--
T ss_conf 960001007887643411134532013566654--6650488--7998999999988788899--9999879999999--
Q ss_pred HHHHHHHHHHCCCCCCEEE------------------EEEEEEEEEEECC
Q ss_conf 9999999987399924197------------------5516999997107
Q 003472 763 WDLELIQQISSHRTVQRVV------------------ALGTLCAIELQAA 794 (817)
Q Consensus 763 l~~~l~~~~~~~p~I~~Vr------------------G~Glm~gIel~~~ 794 (817)
+.+++||.|..|. |-|.|+.+++...
T Consensus 212 ------~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~~ 255 (331)
T d1pffa_ 212 ------EFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGL 255 (331)
T ss_dssp ------HHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSH
T ss_pred ------HHHHHCCCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCEEECCH
T ss_conf ------74531784775234555676178887410135676542133457
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=98.39 E-value=5.9e-05 Score=46.24 Aligned_cols=307 Identities=14% Similarity=0.054 Sum_probs=159.0
Q ss_pred CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCCC----CCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHH
Q ss_conf 1220356522357899899799999999887315-5589----9999967999999998311999866199907867899
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (817)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~-~~~~----~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAv 474 (817)
.|+|.. ..|.- ...+.+|+.+.+.... .... .....+...+.-++++++++.. -+.+.|+.++|++.
T Consensus 29 iYLd~a------s~g~~-p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~-~~ei~~~~~~T~~~ 100 (404)
T d1qz9a_ 29 IYLDGN------SLGAR-PVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGAR-DGEVVVTDTTSINL 100 (404)
T ss_dssp EECCTT------TSCCC-BTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCC-TTSEEECSCHHHHH
T ss_pred EECCCC------CCCCC-CHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCEEEECCCHHHH
T ss_conf 986785------10337-89999999999998750467565552328999999999999996899-87579956706777
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999985302441000248776455552089998187447864211124899887767788756876555898422
Q 003472 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (817)
Q Consensus 475 E~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~ 554 (817)
..++..+....-.. .....+|..+..++........... . . .. .+
T Consensus 101 ~~~~~~~~~~~~~~---------------~~~~~vi~~~~~~~~~~~~~~~~~~-~---~------------~~-~~--- 145 (404)
T d1qz9a_ 101 FKVLSAALRVQATR---------------SPERRVIVTETSNFPTDLYIAEGLA-D---M------------LQ-QG--- 145 (404)
T ss_dssp HHHHHHHHHHHHHH---------------STTCCEEEEETTSCHHHHHHHHHHH-H---H------------HC-SS---
T ss_pred HHHHHHHHHHHCCC---------------CCCCEEEEECCCCCHHHHHHHHHHH-E---E------------EE-EC---
T ss_conf 77765555542035---------------7885799962543347788775422-1---3------------21-00---
Q ss_pred CCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 24762121487111100023444445673012210269116899999999999741999888880799999453346897
Q 003472 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (817)
Q Consensus 555 ~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG 634 (817)
+..+ . ..+. +.+++.+. .++..|.+--+ ....|
T Consensus 146 -------~~~~-~------------~~~~------------------~~~~~~i~--------~~T~lV~i~~v-~~~tG 178 (404)
T d1qz9a_ 146 -------YTLR-L------------VDSP------------------EELPQAID--------QDTAVVMLTHV-NYKTG 178 (404)
T ss_dssp -------CEEE-E------------ESSG------------------GGHHHHCS--------TTEEEEEEESB-CTTTC
T ss_pred -------EECC-C------------CCCC------------------HHHHHHCC--------CCCEEEEEECC-CCCCC
T ss_conf -------0103-5------------4542------------------66898669--------88459998424-55556
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCEEECC--CCCCCCCCCCEEEEECHHHHHHHC
Q ss_conf 312898899999999762399399851100656556310230008999622004--334788875118982257774112
Q 003472 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFV 712 (817)
Q Consensus 635 ~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDIitlg--K~LggGy~Plsavl~~~~i~e~~~ 712 (817)
.+.| ++++.++|+++|+++++|=+|+ +|..-- ......+|+++++ |-+.+|---.+.+..++...+...
T Consensus 179 ~~~p----v~~i~~~~~~~~~~~~vD~~q~-~g~~~~----~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~ 249 (404)
T d1qz9a_ 179 YMHD----MQALTALSHECGALAIWDLAHS-AGAVPV----DLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVP 249 (404)
T ss_dssp BBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSCC----CHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSC
T ss_pred CEEC----HHHHHCCCCCCCCCEEEEEECC-CCCCCC----CCCCCCCEEEEEECHHHCCCCCCEEEEEEECHHHHHHCC
T ss_conf 1623----8997310324443326885123-321233----444454509998050214668856999874365563078
Q ss_pred CCCC-------C----------CEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8886-------5----------3000015899878999999999999519670120899999999999999999987399
Q 003472 713 GDSK-------L----------KALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 713 ~~~~-------~----------~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (817)
.... . ...........+..+.....+.++.+.+.+ .+.+.+....+...+........ ..+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~~~~-~~~ 327 (404)
T d1qz9a_ 250 QPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTD-MASLRRKSLALTDLFIELVEQRC-AAH 327 (404)
T ss_dssp CSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHH-TTS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHC-CCC
T ss_conf 6322357755552223454433560455432001046788877788887766-89999999876789999887543-589
Q ss_pred C---CC--EEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 9---24--19755169999971079777711299999999982989
Q 003472 776 T---VQ--RVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 776 ~---I~--~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~G~~ 816 (817)
. ++ +-.-.|.++++.+.+ ...+...+-++||.
T Consensus 328 ~~~i~~p~~~~~r~~~vsf~~~~---------~~~v~~~L~~~gi~ 364 (404)
T d1qz9a_ 328 ELTLVTPREHAKRGSHVSFEHPE---------GYAVIQALIDRGVI 364 (404)
T ss_dssp CCEECSCSSGGGBCSEEEEECTT---------HHHHHHHHHTTTEE
T ss_pred CEEEECCCCCCCEEEEEEEECCC---------HHHHHHHHHHCCCE
T ss_conf 87997888831201399991699---------99999999888989
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=98.39 E-value=6e-05 Score=46.23 Aligned_cols=238 Identities=9% Similarity=0.047 Sum_probs=131.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 99996799999999831199986619990786789999999999985302441000248776455552089998187447
Q 003472 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (817)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG 518 (817)
...++....|+++|+++-+ .+.++.++||-.|+-+++-.. -+.| ..|++-+..|.|
T Consensus 55 R~~nPT~~~le~~la~LEg---~~~a~~~sSGmaAi~~~~l~l-----~~~g----------------d~vv~~~~~yg~ 110 (394)
T d1e5ea_ 55 RLGNPTVSNLEGKIAFLEK---TEACVATSSGMGAIAATVLTI-----LKAG----------------DHLISDECLYGC 110 (394)
T ss_dssp TTCCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHH-----CCTT----------------CEEEEESCCCHH
T ss_pred CCCCHHHHHHHHHHHHHHC---CCCEEEECCCHHHHHHHHHHH-----CCCC----------------CCCCCCCCEEEH
T ss_conf 9888789999999999829---850223436228889998740-----2334----------------433445413200
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHH
Q ss_conf 86421112489988776778875687655589842224762121487111100023444445673012210269116899
Q 003472 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (817)
Q Consensus 519 ~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (817)
.. .-+.-. ....|. . ++|-|. .|
T Consensus 111 t~-~~~~~~-------------~~~~gi--------------~----------------~~~~d~-------~d------ 133 (394)
T d1e5ea_ 111 TH-ALFEHA-------------LTKFGI--------------Q----------------VDFINT-------AI------ 133 (394)
T ss_dssp HH-HHHHTH-------------HHHTTC--------------E----------------EEEECT-------TS------
T ss_pred HH-HHHHHH-------------HHCCCE--------------E----------------EECCCC-------CC------
T ss_conf 36-767777-------------630543--------------5----------------421478-------99------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH-HHCCCCEEEEEEEECCCCCCCCCHHHH
Q ss_conf 9999999997419998888807999994533468973128988999999997-623993998511006565563102300
Q 003472 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC-QNRKIPVIFDEVFTGFWRLGVETTADL 677 (817)
Q Consensus 599 ~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc-~~~gilLI~DEV~TGfGRtG~~~a~e~ 677 (817)
.+.+++.++ +...+|++|.. ..-...++. ++.+.+.+ +++|+++|+|...+. ...++-
T Consensus 134 --~~~~~~~i~--------~~t~lv~~Etp-~NP~l~v~D----i~~~~~~~~~~~g~~vvvDnT~at------P~~~~P 192 (394)
T d1e5ea_ 134 --PGEVKKHMK--------PNTKIVYFETP-ANPTLKIID----MERVCKDAHSQEGVLVIADNTFCS------PMITNP 192 (394)
T ss_dssp --TTHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTC------TTTCCG
T ss_pred --HHHHHHHHC--------CCCCEEEEECC-CCCCEEEEH----HHHHHHCCCCCCCEEEEECCCCCC------CCCCCC
T ss_conf --999997516--------45658999425-776312212----444420132456708873376547------645784
Q ss_pred CCCCCCEE--ECCCCCCC-CCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCC--CHHHHHHHHHHHHHHCCCCCHHCH
Q ss_conf 08999622--00433478-88751189822577741128886530000158998--789999999999995196701208
Q 003472 678 LGCVPDIA--CYGKLLTG-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSA--HALGCAAAAKSIKWFKDPQTNHNI 752 (817)
Q Consensus 678 ~gv~PDIi--tlgK~Lgg-Gy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~g--nPla~Aaala~L~ile~~~~~~~l 752 (817)
+..-.||+ ...|-++| +=+-.++++++++........ .+-.++++ +|..|.-.+..|+-+.- ..++.
T Consensus 193 l~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~------~~~~~~G~~lsp~~a~ll~rgl~TL~l--Rm~r~ 264 (394)
T d1e5ea_ 193 VDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMV------GIKDITGSVISPHDAWLITRGLSTLNI--RMKAE 264 (394)
T ss_dssp GGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT------CCCCCCCCCCCHHHHHHHHHHHTTHHH--HHHHH
T ss_pred HHCCCCEEEECHHHHCCCCCCCCCCCCCCHHHHHHHHHHH------HHHHHHCCCCCHHHHHHHHHHCHHHHH--HHHHH
T ss_conf 0117988996123420787432333344314689999999------999732777886779999960106889--99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEE------------------EEEEEEEEEECC
Q ss_conf 999999999999999999873999241975------------------516999997107
Q 003472 753 IPERRILRELWDLELIQQISSHRTVQRVVA------------------LGTLCAIELQAA 794 (817)
Q Consensus 753 ~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG------------------~Glm~gIel~~~ 794 (817)
.+++.. +-+.+++||.|..|.- -|.|+.+++...
T Consensus 265 ~~nA~~--------lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~ 316 (394)
T d1e5ea_ 265 SENAMK--------VAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSG 316 (394)
T ss_dssp HHHHHH--------HHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTH
T ss_pred HHHHHH--------HHHHHHHCCCCCEEECCCCCCCCCHHHHHCCCCCCCCEEEEECCCC
T ss_conf 888999--------9999765288457757775663215553034466787245402698
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=98.38 E-value=6.2e-05 Score=46.11 Aligned_cols=237 Identities=14% Similarity=0.096 Sum_probs=126.9
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999988731555899999967999999998311999866199907867899999999999853024410002487764
Q 003472 422 ARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTT 501 (817)
Q Consensus 422 ~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~ 501 (817)
++++.+.+++.-.+. .-+...+|++.+++.++. ..+.+++||+.|...|++.+ . . .
T Consensus 4 ~~~~~~~l~~~~~~~----~G~~~~~fE~~~~~~~~~---~~~~~~~SgT~Al~lal~~l-~-~--~------------- 59 (374)
T d1o69a_ 4 LKYIEEVFKSNYIAP----LGEFVNRFEQSVKDYSKS---ENALALNSATAALHLALRVA-G-V--K------------- 59 (374)
T ss_dssp HHHHHHHHHHTTTSC----TTHHHHHHHHHHHHHHCC---SEEEEESCHHHHHHHHHHHT-T-C--C-------------
T ss_pred HHHHHHHHHCCCCCC----CCHHHHHHHHHHHHHHCC---CEEEEECCHHHHHHHHHHHC-C-C--C-------------
T ss_conf 999999996398078----998999999999999782---95999678799999999986-9-8--8-------------
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCC
Q ss_conf 55552089998187447864211124899887767788756876555898422247621214871111000234444456
Q 003472 502 EKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFC 581 (817)
Q Consensus 502 ~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~ 581 (817)
....||.-.-+|-... .++...+.. -. |.
T Consensus 60 ---~gdeVi~p~~t~~a~~-~~~~~~g~~--------------pv---------------------------------~~ 88 (374)
T d1o69a_ 60 ---QDDIVLASSFTFIASV-APICYLKAK--------------PV---------------------------------FI 88 (374)
T ss_dssp ---TTCEEEEESSSCGGGT-HHHHHTTCE--------------EE---------------------------------EE
T ss_pred ---CCCEEEECCCCHHHHH-HHHHHCCCE--------------EE---------------------------------EC
T ss_conf ---8399994996617437-998434450--------------57---------------------------------34
Q ss_pred CCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 73012210269116899999999999741999888880799999453346897312898899999999762399399851
Q 003472 582 SRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDE 661 (817)
Q Consensus 582 d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DE 661 (817)
|.+.... .. . ...+..... ...++.|+++--+ .| .... +.+++++|+++|+++|-|-
T Consensus 89 Di~~~~~--~~--~------~~~~~~~~~-----~~~~~~aii~~~~-~G---~~~d----~~~i~~~~~~~~i~vIED~ 145 (374)
T d1o69a_ 89 DCDETYN--ID--V------DLLKLAIKE-----CEKKPKALILTHL-YG---NAAK----MDEIVEICKENDIVLIEDA 145 (374)
T ss_dssp CBCTTSS--BC--H------HHHHHHHHH-----CSSCCCEEEEECG-GG---CCCC----HHHHHHHHHHTTCEEEEEC
T ss_pred CCCCCCC--CC--C------CCCCCCCHH-----CCCCCCCCCCCCC-CC---CHHH----HHHHHHHHHCCCCCHHHHH
T ss_conf 6653210--12--1------233421000-----0123320111113-33---1033----6888987651694410222
Q ss_pred EEECCCCCCCCCHHHHCCCCCCEEECC----CCCCCCCCCCEEEEECHHHHHHHC---CCCC-----CCEEECCCCCCCC
Q ss_conf 100656556310230008999622004----334788875118982257774112---8886-----5300001589987
Q 003472 662 VFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLATNAVFDSFV---GDSK-----LKALLHGHSYSAH 729 (817)
Q Consensus 662 V~TGfGRtG~~~a~e~~gv~PDIitlg----K~LggGy~Plsavl~~~~i~e~~~---~~~~-----~~~~~h~~T~~gn 729 (817)
.|+ ||- .+.-...|--.|+.|+| |.++.|- --+++..++++++... .... ......|+.+-.+
T Consensus 146 a~a-~g~---~~~~~~~G~~gd~~~fSf~~~K~l~tge-GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ 220 (374)
T d1o69a_ 146 AEA-LGS---FYKNKALGTFGEFGVYSYNGNKIITTSG-GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLS 220 (374)
T ss_dssp TTC-TTC---EETTEETTSSSSEEEEECCTTSSSCCSS-CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCC
T ss_pred HHH-HCC---EECCEECCCCCCEEEEECCCCCCCCCCC-CEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 342-145---6788406887755789425764653466-52221336899985302222333333333334588642446
Q ss_pred HHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHH
Q ss_conf 89999999999995196701208999999999999999
Q 003472 730 ALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (817)
Q Consensus 730 Pla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l 767 (817)
.+.+|.+++-|+.+++ ..++-+...+++.+.+
T Consensus 221 ei~Aaig~~qL~~l~~------~i~~r~~i~~~y~~~L 252 (374)
T d1o69a_ 221 NVLGAIGVAQMEVLEQ------RVLKKREIYEWYKEFL 252 (374)
T ss_dssp HHHHHHHHHHHTTHHH------HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH------HCCHHHHHHHHHHHHC
T ss_conf 2456666777766543------1004678999988640
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.36 E-value=9.7e-06 Score=51.24 Aligned_cols=215 Identities=14% Similarity=0.086 Sum_probs=115.4
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 61999078678999999999998530244100024877645555208999818744786421112489988776778875
Q 003472 462 SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWY 541 (817)
Q Consensus 462 ~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~ 541 (817)
+.++|+.||++|++++++-..+. ... ..++++...+.++....-..........
T Consensus 58 ~~i~~t~sgT~a~~~~~~~l~~~--~~~----------------gd~vlv~~~~~~~~~~~~~~~~~~~~~~-------- 111 (382)
T d2bkwa1 58 QPFVLAGSGTLGWDIFASNFILS--KAP----------------NKNVLVVSTGTFSDRFADCLRSYGAQVD-------- 111 (382)
T ss_dssp EEEEEESCTTHHHHHHHHHHSCT--TCS----------------CCEEEEECSSHHHHHHHHHHHHTTCEEE--------
T ss_pred EEEEEECCHHHHHHHHHHHHHHH--CCC----------------CCCEEEEEECHHHHHHHHHCCCCCCCCC--------
T ss_conf 19999386899999999998876--079----------------9824899731233443431110013333--------
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 68765558984222476212148711110002344444567301221026911689999999999974199988888079
Q 003472 542 SGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG 621 (817)
Q Consensus 542 ~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iA 621 (817)
.....+... ..+ .+.+++.+.. .++.
T Consensus 112 ------------------~~~~~~~~~---------------------~~~--------~~~~~~~~~~-------~~~~ 137 (382)
T d2bkwa1 112 ------------------VVRPLKIGE---------------------SVP--------LELITEKLSQ-------NSYG 137 (382)
T ss_dssp ------------------EECCSSTTS---------------------CCC--------HHHHHHHHHH-------SCCS
T ss_pred ------------------CCCCCCCCC---------------------CCC--------HHHHHHHHHH-------CCCH
T ss_conf ------------------322367777---------------------564--------1579998630-------1101
Q ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCCCCHHHHCCCCCCEEEC--CCCCCCCCCC
Q ss_conf 999945334689731289889999999976239--939985110065655631023000899962200--4334788875
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK--IPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIP 697 (817)
Q Consensus 622 AiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~g--ilLI~DEV~TGfGRtG~~~a~e~~gv~PDIitl--gK~LggGy~P 697 (817)
.+.+--+ ....|...+ +..+.++|++++ +++++|=+|+ +|-. ..-.+. ...|++++ -|.++|- -=
T Consensus 138 ~v~~~~~-~~~tg~~~~----~~~~~~~~~~~~~~~~~~vDa~qs-~g~~--pid~~~--~giD~~~~s~~K~l~gP-~G 206 (382)
T d2bkwa1 138 AVTVTHV-DTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE--EFEFDE--WGVDFALTASQKAIGAP-AG 206 (382)
T ss_dssp EEEEESE-ETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS--CCCTTT--TTCSEEEEESSSTTCCC-SC
T ss_pred HEEEEEC-CCCCCCCCC----CHHHHHHCCCCCCCEEEEEECCCC-CCCC--CCCCCC--CCEEEEEECCCCCCCCC-CC
T ss_conf 0023211-224630244----123333201334310256302455-3221--232335--57569950566667689-75
Q ss_pred CEEEEECHHHHHHHCCCCC---CCEE----------------ECCCC-CCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHH
Q ss_conf 1189822577741128886---5300----------------00158-99878999999999999519670120899999
Q 003472 698 LAATLATNAVFDSFVGDSK---LKAL----------------LHGHS-YSAHALGCAAAAKSIKWFKDPQTNHNIIPERR 757 (817)
Q Consensus 698 lsavl~~~~i~e~~~~~~~---~~~~----------------~h~~T-~~gnPla~Aaala~L~ile~~~~~~~l~~~~~ 757 (817)
++.+..+++..+....... ...+ .-+.| ++-+.....+..++|+.+.+++. ++..++.+
T Consensus 207 ~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~-~~~~~~~~ 285 (382)
T d2bkwa1 207 LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGL-HKRWDLHR 285 (382)
T ss_dssp EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_conf 02554059998643310358886630111221002331134555653567757778999999999987632-45579999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q 003472 758 ILRELWDLELI 768 (817)
Q Consensus 758 ~l~~~l~~~l~ 768 (817)
.+..++.+.+.
T Consensus 286 ~l~~~l~~~l~ 296 (382)
T d2bkwa1 286 EMSDWFKDSLV 296 (382)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999764
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=98.36 E-value=2e-05 Score=49.27 Aligned_cols=238 Identities=12% Similarity=0.134 Sum_probs=134.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 99996799999999831199986619990786789999999999985302441000248776455552089998187447
Q 003472 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (817)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG 518 (817)
...++....|+++|+++-+ .+.++.++||-.|+-+++.... +.| ..||+....|-|
T Consensus 54 R~~nPt~~~le~~la~LEg---~~~a~~~~SGMaAi~~~l~~l~-----~~G----------------d~iv~~~~~Yg~ 109 (391)
T d1cl1a_ 54 RRGTLTHFSLQQAMCELEG---GAGCVLFPCGAAAVANSILAFI-----EQG----------------DHVLMTNTAYEP 109 (391)
T ss_dssp TTCCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHC-----CTT----------------CEEEEETTSCHH
T ss_pred CCCCHHHHHHHHHHHHHHC---CCCEEEECCCCCEEEEHHHCCC-----CCC----------------CEEEEECCCCCC
T ss_conf 8998659999999999819---9527985150001110222046-----778----------------769983355520
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHH
Q ss_conf 86421112489988776778875687655589842224762121487111100023444445673012210269116899
Q 003472 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (817)
Q Consensus 519 ~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (817)
.. .-+.-. ....|. .+ .|-|. .|.
T Consensus 110 T~-~l~~~~-------------l~~~Gi--------------~~----------------~~~d~-------~d~----- 133 (391)
T d1cl1a_ 110 SQ-DFCSKI-------------LSKLGV--------------TT----------------SWFDP-------LIG----- 133 (391)
T ss_dssp HH-HHHHHT-------------GGGGTC--------------EE----------------EEECT-------TCG-----
T ss_pred HH-HHHHHC-------------CCCCCC--------------CC----------------CCCCC-------CCC-----
T ss_conf 13-332201-------------123333--------------32----------------00267-------311-----
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEEECCCCCCCCCHHH
Q ss_conf 999999999741999888880799999453346897312898899999999762--399399851100656556310230
Q 003472 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGVETTAD 676 (817)
Q Consensus 599 ~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~--~gilLI~DEV~TGfGRtG~~~a~e 676 (817)
+.+++.+ ..+..+|.+|.. ..- .+.+++ ++.+.++|++ +|+++|+|..... ...++
T Consensus 134 ---~~~~~~i--------~~~t~~i~~Etp-sNP-~l~v~D---i~~i~~~a~~~~~g~~~vVDnT~at------P~~~~ 191 (391)
T d1cl1a_ 134 ---ADIVKHL--------QPNTKIVFLESP-GSI-TMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAA------GVLFK 191 (391)
T ss_dssp ---GGGGGTC--------CTTEEEEEEESS-CTT-TCCCCC---HHHHHHHHHHHCTTCEEEEECTTTT------TTSSC
T ss_pred ---CCCCCCC--------CCCCCEEEECCC-CCC-CCCCCC---CHHHHHHHHHCCCCCEEEEECCCCC------HHHHC
T ss_conf ---1222333--------455533553035-765-321123---2789998874157827998534332------32211
Q ss_pred HCCCCCCEE--ECCCCCCC-CCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHH
Q ss_conf 008999622--00433478-887511898225777411288865300001589987899999999999951967012089
Q 003472 677 LLGCVPDIA--CYGKLLTG-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (817)
Q Consensus 677 ~~gv~PDIi--tlgK~Lgg-Gy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~ 753 (817)
-+..-.||+ ...|-++| |=+-.|+++.+++..+.+.... ...+.+ -.|..|...+..|+-+.- ..++..
T Consensus 192 Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~----~~~G~~--~~p~~a~ll~rgl~TL~l--R~~~~~ 263 (391)
T d1cl1a_ 192 ALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA----YLMGQM--VDADTAYITSRGLRTLGV--RLRQHH 263 (391)
T ss_dssp GGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH----HHTTCC--CCHHHHHHHHHHHTTHHH--HHHHHH
T ss_pred CCCCCCCEEEEECCHHCCCCCCCCCCCEECCCCCCCCCHHHH----HCCCCC--CCCHHHHHHHCCCHHHHH--HHHHHH
T ss_conf 135334067762310003665333442000354321000111----100135--785120244435316788--999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEE------------------EEEEEEEEEEECC
Q ss_conf 9999999999999999987399924197------------------5516999997107
Q 003472 754 PERRILRELWDLELIQQISSHRTVQRVV------------------ALGTLCAIELQAA 794 (817)
Q Consensus 754 ~~~~~l~~~l~~~l~~~~~~~p~I~~Vr------------------G~Glm~gIel~~~ 794 (817)
+++..+ .+.+++||.|..|. |.|.++.|++...
T Consensus 264 ~nA~~v--------A~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~ 314 (391)
T d1cl1a_ 264 ESSLKV--------AEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKK 314 (391)
T ss_dssp HHHHHH--------HHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC
T ss_pred HHHHHH--------HHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 999999--------988874465433333222204568988630589876402453388
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.32 E-value=8.3e-05 Score=45.32 Aligned_cols=195 Identities=13% Similarity=-0.028 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHCCCCC--------CCEEEEECCHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 679999999983119998--------661999078678999999999998530244-10002487764555520899981
Q 003472 443 EPALECAELLLQGVGKGW--------ASRAYFSDNGSTAIEIALKMAFRKFSFDHE-VLVDFLGKDTTEKCIELKVLALK 513 (817)
Q Consensus 443 ~~~~eLae~L~~~~~~~~--------~~~v~f~~SGseAvE~ALKlA~r~~t~~~G-~~~~~~~~~~~~~~~r~~II~~~ 513 (817)
....++.++|+++++.+. -..-.++++||+||..||..||.++..+.. ...+ ... ....++.++...
T Consensus 113 ~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g-~~~---~~~~~~~vv~~s 188 (476)
T d1js3a_ 113 ELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPG-LTQ---GAVLEKLVAYAS 188 (476)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTT-CCH---HHHHHHEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCC-CCC---CCCCCCEEEEEC
T ss_conf 9999999999998578720015787777755888279999999999999998761435567-544---556675289842
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCC
Q ss_conf 87447864211124899887767788756876555898422247621214871111000234444456730122102691
Q 003472 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (817)
Q Consensus 514 gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~ 593 (817)
..-|-+..-++.+-|-. ...++....+ .-|
T Consensus 189 ~~~H~Si~ka~~~lGl~----------------------------~~~v~~d~~~---------------------~md- 218 (476)
T d1js3a_ 189 DQAHSSVERAGLIGGVK----------------------------LKAIPSDGKF---------------------AMR- 218 (476)
T ss_dssp TTCCHHHHHHHHHHTCE----------------------------EEEECCCTTS---------------------CCC-
T ss_pred CCCCHHHHHHHHHCCCE----------------------------EEEECCCCCC---------------------CCC-
T ss_conf 00309999999866953----------------------------7884348777---------------------848-
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC
Q ss_conf 16899999999999741999888880799999453346897312898899999999762399399851100656556310
Q 003472 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (817)
Q Consensus 594 ~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~ 673 (817)
.+.|++.+++.. +.+..+.+|+.--- ....|.+.| ++++.++|++|++.+-+|=.+.|+...-.-.
T Consensus 219 -------~~~L~~~i~~~~--~~g~~p~~VvataG-tt~~G~iDp----l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~ 284 (476)
T d1js3a_ 219 -------ASALQEALERDK--AAGLIPFFVVATLG-TTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEF 284 (476)
T ss_dssp -------HHHHHHHHHHHH--HTTCEEEEEEEEBS-CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTT
T ss_pred -------HHHHHHHHHHHH--HCCCCCEEEEECCC-CCCCEEECC----HHHHHHHHHHCCCEEEEECCCCHHHHHHCCH
T ss_conf -------999999999887--65998689860478-866212125----9999899975593799945532235430004
Q ss_pred HHHHCCC-CCCEEEC--CCCCCCCCCCCEEEEECHH
Q ss_conf 2300089-9962200--4334788875118982257
Q 003472 674 TADLLGC-VPDIACY--GKLLTGGVIPLAATLATNA 706 (817)
Q Consensus 674 a~e~~gv-~PDIitl--gK~LggGy~Plsavl~~~~ 706 (817)
-.-..|+ ..|-+++ -|.+..- ++.|++++++.
T Consensus 285 ~~~~~gi~~aDSit~d~HK~l~~P-~~~g~~l~r~~ 319 (476)
T d1js3a_ 285 RHLLNGVEFADSFNFNPHKWLLVN-FDCSAMWVKRR 319 (476)
T ss_dssp GGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESCH
T ss_pred HHHHCCCCCCCEEEECCCCCCCCC-CCCEEECCCCH
T ss_conf 665158864424656576565647-76300001456
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=98.30 E-value=4.3e-05 Score=47.11 Aligned_cols=229 Identities=13% Similarity=0.060 Sum_probs=114.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 97999999998873155589999996799999999831199986619990786789999999999985302441000248
Q 003472 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (817)
Q Consensus 418 ~p~I~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~ 497 (817)
+|+|.+|+... .......-..+...+.-+.|.++++-+....++|+.||++|+|+++.-+. .
T Consensus 29 ~~~V~~Am~~~----~~~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~-----~--------- 90 (388)
T d2ch1a1 29 SKRVLTAMTNT----VLSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL-----E--------- 90 (388)
T ss_dssp CHHHHHHTTSC----CCCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC-----C---------
T ss_pred CHHHHHHHCCC----CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHC-----C---------
T ss_conf 99999974767----78878899999999999999999689997199976848999999999742-----1---------
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCC
Q ss_conf 77645555208999818744786421112489988776778875687655589842224762121487111100023444
Q 003472 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (817)
Q Consensus 498 ~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~ 577 (817)
...+++....+..|........... . ....+..+...
T Consensus 91 -------~~~~vl~~~~g~~~~~~~~~~~~~~----~-----------------------~~~~~~~~~~~--------- 127 (388)
T d2ch1a1 91 -------EGDRVLIAVNGIWAERAVEMSERYG----A-----------------------DVRTIEGPPDR--------- 127 (388)
T ss_dssp -------TTCEEEEEESSHHHHHHHHHHHHTT----C-----------------------EEEEEECCTTS---------
T ss_pred -------CCCCCCCCCCCCCCCCCHHHHHHHC----C-----------------------CCCCCCCCCCC---------
T ss_conf -------1133333222310000033443311----3-----------------------32123565445---------
Q ss_pred CCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 44567301221026911689999999999974199988888079999945334689731289889999999976239939
Q 003472 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (817)
Q Consensus 578 ~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilL 657 (817)
..+ . ..++..+.. .... .+.+--+ -...|...+ .+.+.++|+++|+++
T Consensus 128 ------------~~~---~-----~~~~~~~~~----~~~~---~v~~~~~-~t~tG~~~~----~~~i~~~~~~~~~~~ 175 (388)
T d2ch1a1 128 ------------PFS---L-----ETLARAIEL----HQPK---CLFLTHG-DSSSGLLQP----LEGVGQICHQHDCLL 175 (388)
T ss_dssp ------------CCC---H-----HHHHHHHHH----HCCS---EEEEESE-ETTTTEECC----CTTHHHHHHHTTCEE
T ss_pred ------------CCC---H-----HHHHHHHCC----CCCC---EEEEEEC-CCCCCCCCC----HHHHCCHHCCCCCEE
T ss_conf ------------521---0-----123444304----7863---3565302-222322211----122000001465403
Q ss_pred EEEEEEECCCCCCCCCHHHHCCCCCCEEECCC--CCCCCCCCCEEEEECHHHHHHHCCCC-CCCE---------------
Q ss_conf 98511006565563102300089996220043--34788875118982257774112888-6530---------------
Q 003472 658 IFDEVFTGFWRLGVETTADLLGCVPDIACYGK--LLTGGVIPLAATLATNAVFDSFVGDS-KLKA--------------- 719 (817)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv~PDIitlgK--~LggGy~Plsavl~~~~i~e~~~~~~-~~~~--------------- 719 (817)
++|-+|+ +| +...-.+ ....|++++|+ ++++- --++.+..+++..+...... ....
T Consensus 176 ~vD~~ss-~g--~~pid~~--~~~~d~~~~s~~K~~~gp-~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (388)
T d2ch1a1 176 IVDAVAS-LC--GVPFYMD--KWEIDAVYTGAQKVLGAP-PGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCY 249 (388)
T ss_dssp EEECTTT-BT--TBCCCTT--TTTCCEEECCCC-CCCCC-SSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCS
T ss_pred EEEEEEC-CC--CCCCCHH--CCCCEEEEECCCCCCCCC-CEEEEEECCHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 6653210-23--4662123--057639998265545788-7289972427788754202575531025603555430233
Q ss_pred -EECCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf -00015899878999999999999519
Q 003472 720 -LLHGHSYSAHALGCAAAAKSIKWFKD 745 (817)
Q Consensus 720 -~~h~~T~~gnPla~Aaala~L~ile~ 745 (817)
......+......+.+..+.++.+..
T Consensus 250 ~~~~~~~~t~~~~~i~~~~~~l~~~~~ 276 (388)
T d2ch1a1 250 DEPKRYHHTVASNLIFALREALAQIAE 276 (388)
T ss_dssp SSCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 200255765327789999999999987
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=98.28 E-value=0.00011 Score=44.66 Aligned_cols=165 Identities=10% Similarity=0.038 Sum_probs=90.1
Q ss_pred CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCEE--ECCCCCC-CCC
Q ss_conf 0799999453346897312898899999999762399399851100656556310230008999622--0043347-888
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLT-GGV 695 (817)
Q Consensus 619 ~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDIi--tlgK~Lg-gGy 695 (817)
.-..++.-|- .=.|... +.. .+.+ +.++++++|.||+...+.-......... -..-|+ ++||.++ .|
T Consensus 139 ~~~l~l~nP~--NPtG~~~-s~~---~l~~-~~~~~~~ii~Dd~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~~~~G- 208 (334)
T d2f8ja1 139 GDVVFIPNPN--NPTGHVF-ERE---EIER-ILKTGAFVALDEAYYEFHGESYVDFLKK--YENLAVIRTFSKAFSLAA- 208 (334)
T ss_dssp TEEEEEESSC--TTTCCCC-CHH---HHHH-HHTTTCEEEEECTTGGGTCCCCGGGGGT--CSSEEEEEESTTTSSCTT-
T ss_pred CEEEEECCCC--CCCCEEE-CHH---HHHC-CCCCEEEEEECCCCHHHCCCCCCCCCCC--CCEEEEEECCCCCCCHHH-
T ss_conf 3488741556--6542130-478---8411-3453169950344300012323222356--754999954753100223-
Q ss_pred CCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 75118982257774112888653000015899878999999999999519670120899999999999999999987399
Q 003472 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 696 ~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (817)
+-+|.+++.+++.+.+... -.++..+..+..++.+.++. .+..+...+....-++. +.+.+++++
T Consensus 209 ~R~G~~~~~~~~i~~l~~~--------~~~~~~s~~~~~~a~~~l~~---~~~~~~~~~~~~~~r~~----l~~~L~~~g 273 (334)
T d2f8ja1 209 QRVGYVVASEKFIDAYNRV--------RLPFNVSYVSQMFAKVALDH---REIFEERTKFIVEERER----MKSALREMG 273 (334)
T ss_dssp TCEEEEEECHHHHHHHHHH--------SCTTCSCHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHH----HHHHHHHHT
T ss_pred HHHHHCCCCHHHHHHHHHH--------HCCCCCCHHHHHHCCCCCCC---CCCHHHHHHHHHHHHHH----HHHHHHHCC
T ss_conf 3100013455889988875--------15533312344210123222---22114589999998999----999999879
Q ss_pred CCCEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 92419755169999971079777711299999999982989
Q 003472 776 TVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 776 ~I~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~G~~ 816 (817)
. .-+...|.++-+.+... ....+...++++||+
T Consensus 274 ~-~~~~~~g~f~~~~~~~~-------~~~~~~~~L~~~GI~ 306 (334)
T d2f8ja1 274 Y-RITDSRGNFVFVFMEKE-------EKERLLEHLRTKNVA 306 (334)
T ss_dssp C-EECCCCSSEEEEECCHH-------HHHHHHHHHHHTTEE
T ss_pred C-EECCCCCEEEEEECCCC-------CHHHHHHHHHHCCCE
T ss_conf 8-68789863999989998-------899999999978888
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=0.00012 Score=44.21 Aligned_cols=307 Identities=13% Similarity=0.035 Sum_probs=161.2
Q ss_pred CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHCCCCC-CC-EEEEECCHHHHHHH
Q ss_conf 12203565223578998997999999998873155-58999999679999999983119998-66-19990786789999
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKGW-AS-RAYFSDNGSTAIEI 476 (817)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~~~~~-~~-~v~f~~SGseAvE~ 476 (817)
..||+..|.= .+.-++.+.+|+++.+....+ +....+..+....+++.+.+..+... -+ .++.++.+++|...
T Consensus 27 ~~i~l~~G~P----d~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~ 102 (382)
T d1u08a_ 27 QAINLSQGFP----DFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA 102 (382)
T ss_dssp TCEECCCSSC----SSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred CCEECCCCCC----CCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHH
T ss_conf 9788549889----997789999999999855998898986779999999999999849998877237864635888999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999998530244100024877645555208999818744786421112489988776778875687655589842224
Q 003472 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (817)
Q Consensus 477 ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~ 556 (817)
++... ...| ..|+..+-+|...... +...+..
T Consensus 103 ~~~~l-----~~~g----------------d~vl~~~p~y~~~~~~-~~~~g~~-------------------------- 134 (382)
T d1u08a_ 103 AITAL-----VRNG----------------DEVICFDPSYDSYAPA-IALSGGI-------------------------- 134 (382)
T ss_dssp HHHHH-----CCTT----------------CEEEEEESCCTTHHHH-HHHTTCE--------------------------
T ss_pred HHHHC-----CCCC----------------CEEEEECCCCCCHHHH-HHHCCCC--------------------------
T ss_conf 87510-----3564----------------0599731443213455-4431332--------------------------
Q ss_pred CCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 76212148711110002344444567301221026911689999999999974199988888079999945334689731
Q 003472 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (817)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~ 636 (817)
...++.+... . ..| .+.++..+. ....+.++.-| ..-.|.+
T Consensus 135 --~~~~~~~~~~------------~--------~~d--------~~~l~~~~~-------~~~~~i~l~~P--~NPtG~v 175 (382)
T d1u08a_ 135 --VKRMALQPPH------------F--------RVD--------WQEFAALLS-------ERTRLVILNTP--HNPSATV 175 (382)
T ss_dssp --EEEEECCTTT------------C--------CCC--------HHHHHHHCC-------TTEEEEEEESS--CTTTCCC
T ss_pred --CEECCCCCCC------------C--------CCC--------HHHHHHHHC-------CCCCEEEECCC--CCCCCCC
T ss_conf --0001221433------------5--------689--------999731213-------57408998798--7654545
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHH-HCCCCCC----EEECCCCCC-CCCCCCEEEEECHHHHHH
Q ss_conf 2898899999999762399399851100656556310230-0089996----220043347-888751189822577741
Q 003472 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD-LLGCVPD----IACYGKLLT-GGVIPLAATLATNAVFDS 710 (817)
Q Consensus 637 ~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e-~~gv~PD----IitlgK~Lg-gGy~Plsavl~~~~i~e~ 710 (817)
. +...++++.++|+++++.++.||+..-+-..+...... .....+| +..++|.++ .| +-+|.+++.+++.+.
T Consensus 176 ~-~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG-~RiG~~v~~~~~~~~ 253 (382)
T d1u08a_ 176 W-QQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTG-WKVGYCVAPAPISAE 253 (382)
T ss_dssp C-CHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGG-GCCEEEECCHHHHHH
T ss_pred C-CCCCCHHHHHHHCCCCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC-CCCHHHHCCCHHHHH
T ss_conf 6-53320123322102432024303202103433455420001234685799850355214786-651101021013788
Q ss_pred HCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-EEEEEE
Q ss_conf 1288865300001589987899999999999951967012089999999999999999998739992419755-169999
Q 003472 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAI 789 (817)
Q Consensus 711 ~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~-Glm~gI 789 (817)
+... ....+++.+...-.++.+.++.- ++....+.+.-+...+ .+.+.+.... +.-+... |+++-+
T Consensus 254 ~~~~------~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~----~l~~~~~~~g-~~~~~p~gg~~~~~ 320 (382)
T d1u08a_ 254 IRKV------HQYLTFSVNTPAQLALADMLRAE--PEHYLALPDFYRQKRD----ILVNALNESR-LEILPCEGTYFLLV 320 (382)
T ss_dssp HHHH------HHHHTSSCCHHHHHHHHHHHHHC--THHHHTHHHHHHHHHH----HHHHHTTSSS-CEECCCCBSSEEEE
T ss_pred HHHH------HCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHHHHH----HHHHHHCCCC-CEEECCCCEEEEEE
T ss_conf 8752------02232345643332233322220--6777789999876300----0022320378-57956894679989
Q ss_pred EEECCCCCCCCCHHHHHHHHHH-HCCCC
Q ss_conf 9710797777112999999999-82989
Q 003472 790 ELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 790 el~~~~~~~~~~~~~~~~~~~l-~~G~~ 816 (817)
.+...+ ......|..+++ ++||.
T Consensus 321 ~~~~~~----~~d~~e~~~~ll~e~gV~ 344 (382)
T d1u08a_ 321 DYSAVS----TLDDVEFCQWLTQEHGVA 344 (382)
T ss_dssp ECTTTC----CSCHHHHHHHHHHHSCEE
T ss_pred ECCCCC----CCCHHHHHHHHHHHCCEE
T ss_conf 568889----999999999999979999
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.23 E-value=0.00014 Score=43.95 Aligned_cols=245 Identities=11% Similarity=0.099 Sum_probs=132.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 99967999999998311999866199907867899999999999853024410002487764555520899981874478
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++....|+++|+++-+ .+.++.++||-.|+-+++.+. .. ...||+....|.|.
T Consensus 52 ~gnPT~~~lE~~la~LE~---~~~a~~~sSGmaAi~~~l~~l------~~----------------gd~iv~~~~~yg~t 106 (393)
T d1n8pa_ 52 SQNPNRENLERAVAALEN---AQYGLAFSSGSATTATILQSL------PQ----------------GSHAVSIGDVYGGT 106 (393)
T ss_dssp TCCHHHHHHHHHHHHHTT---CSEEEEESCHHHHHHHHHHTS------CS----------------SCEEEEESSCCHHH
T ss_pred CCCHHHHHHHHHHHHHHC---CCEEEEECCCHHHHHHHHHCC------CC----------------CCEEEEEEEECCCC
T ss_conf 998689999999999719---954888347016777665303------57----------------98344322001340
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHH
Q ss_conf 64211124899887767788756876555898422247621214871111000234444456730122102691168999
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (817)
.......- +..|. . +.|-+. .
T Consensus 107 ~~~~~~~l--------------~~~gi--------------~----------------~~~~~~-----------~---- 127 (393)
T d1n8pa_ 107 HRYFTKVA--------------NAHGV--------------E----------------TSFTND-----------L---- 127 (393)
T ss_dssp HHHHHHTS--------------TTTCS--------------C----------------CEEESS-----------H----
T ss_pred HHHHHHHH--------------HCCCC--------------E----------------EEEEEC-----------C----
T ss_conf 34445454--------------12552--------------2----------------588513-----------5----
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEEECCCCCCCCCHH
Q ss_conf 9999999974199988888079999945334689731289889999999976----239939985110065655631023
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ----NRKIPVIFDEVFTGFWRLGVETTA 675 (817)
Q Consensus 600 ~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~----~~gilLI~DEV~TGfGRtG~~~a~ 675 (817)
.+.+++.+. .+..+|++|.. +.--..+++ ++.+.++|+ ++|+++|+|.... ....+
T Consensus 128 -~~~~~~~i~--------~~t~lv~~Esp--sNP~l~v~D---i~~ia~~a~~~~~~~g~~lvVDnT~a------tP~~~ 187 (393)
T d1n8pa_ 128 -LNDLPQLIK--------ENTKLVWIETP--TNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFL------SPYIS 187 (393)
T ss_dssp -HHHHHHHSC--------SSEEEEEECSS--CTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTT------HHHHC
T ss_pred -HHHHHHHHH--------HHCCEEEECCC--CHHHHHCCC---HHHHHHHHHHHCCCCCCEEEEECCCC------CCCCC
T ss_conf -689999851--------20134672376--323432020---35555444420146784599856744------70447
Q ss_pred HHCCCCCCEE--ECCCCCCC-CCCCCEEEEEC-HHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHC
Q ss_conf 0008999622--00433478-88751189822-57774112888653000015899878999999999999519670120
Q 003472 676 DLLGCVPDIA--CYGKLLTG-GVIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN 751 (817)
Q Consensus 676 e~~gv~PDIi--tlgK~Lgg-Gy~Plsavl~~-~~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~ 751 (817)
+-+..-.||+ ...|-++| |=+-.|+++.+ +++++.+.... ...|. ..+|..|...+..|+-+.- ..++
T Consensus 188 ~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~----~~~G~--~~~p~~a~ll~rgl~Tl~l--R~~~ 259 (393)
T d1n8pa_ 188 NPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQ----NAIGA--IPSPFDAWLTHRGLKTLHL--RVRQ 259 (393)
T ss_dssp CGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHH----HHHCC--CCCHHHHHHHHHHHTTHHH--HHHH
T ss_pred CCHHHCCCEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHH----HHCCC--CCCHHHHHHHHHCCCCHHH--HHHH
T ss_conf 70541898999816644579886026301102166999999998----64388--8986889999827750346--7999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC-CCCCEEE--------------------EEEEEEEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 89999999999999999998739-9924197--------------------5516999997107977771129999999
Q 003472 752 IIPERRILRELWDLELIQQISSH-RTVQRVV--------------------ALGTLCAIELQAAGCNAGYCLIELFLYN 809 (817)
Q Consensus 752 l~~~~~~l~~~l~~~l~~~~~~~-p~I~~Vr--------------------G~Glm~gIel~~~~~~~~~~~~~~~~~~ 809 (817)
..+++..+.+.| +.+ +.|..|. |-|.|+.|++.... +....|+.+
T Consensus 260 ~~~nA~~lA~~L--------~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~~-----~~~~~f~~~ 325 (393)
T d1n8pa_ 260 AALSANKIAEFL--------AADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGA-----EAASKFASS 325 (393)
T ss_dssp HHHHHHHHHHHH--------TSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHH--------HHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEEEEECCH-----HHHHHHHHH
T ss_conf 999888899999--------733672799730233454320022210345787714899995999-----999999971
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=98.22 E-value=6.1e-06 Score=52.50 Aligned_cols=91 Identities=9% Similarity=0.048 Sum_probs=51.4
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH---H-HCCCCEEEEEECCCCCCCH
Q ss_conf 77778999589987787899970346753179999999759988299999999999---9-5799289999915899997
Q 003472 219 KMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL---K-LRGYDVVAVVFEDHGLVNE 294 (817)
Q Consensus 219 ~~~d~~iiEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l---~-~~~~~v~gvi~N~~~~~~~ 294 (817)
..+|+++|....++... ..+.-++...-..+++|+....-++..+....+.+ . ..+.++.|+|+|+......
T Consensus 117 ~~~D~iiiD~pp~~~~~----~~~~~~~~~~a~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~~ 192 (289)
T d2afhe1 117 DDLDFVFYDVLGDVVCG----GFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDRE 192 (289)
T ss_dssp TTCSEEEEEEECSSCCT----TTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTH
T ss_pred CCCCEEEECCCCCCCHH----HHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHCCHHH
T ss_conf 45886861558865788----99999874024403203640577888889999877765202443214401000100036
Q ss_pred HH----HHHHHCCCCCEEE-CCCCCC
Q ss_conf 98----9985308996986-599999
Q 003472 295 VP----LMSYLRNRVPVLV-LPPLPQ 315 (817)
Q Consensus 295 ~~----l~~~~~~~~pvlg-ip~~~~ 315 (817)
.. +.+.+ +.++++ ||+...
T Consensus 193 ~~~~~~~~~~~--g~~vl~~IP~~~~ 216 (289)
T d2afhe1 193 DELIIALANKL--GTQMIHFVPRDNV 216 (289)
T ss_dssp HHHHHHHHHHH--TSCEEEEECCCHH
T ss_pred HHHHHHHHHHC--CCEEEEEEECCHH
T ss_conf 78999999974--9827999945678
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=98.21 E-value=8.2e-05 Score=45.35 Aligned_cols=117 Identities=15% Similarity=0.013 Sum_probs=67.1
Q ss_pred CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCH---HH---HCCCCCCEEECCCCC
Q ss_conf 807999994533468973128988999999997623993998511006565563102---30---008999622004334
Q 003472 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT---AD---LLGCVPDIACYGKLL 691 (817)
Q Consensus 618 ~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a---~e---~~gv~PDIitlgK~L 691 (817)
.+...+++-.- +.=.|... +.+.+++|.++|++|++++|.||++.+|.-.+.... .. ......-+..++|.+
T Consensus 171 ~~~~~i~~~~P-~NPTG~~~-s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~ 248 (396)
T d2q7wa1 171 AGDVVLFHGCC-HNPTGIDP-TLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNF 248 (396)
T ss_dssp TTCEEEEECSS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTT
T ss_pred CCCEEEEECCC-CCCCCEEC-CHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 58389995688-49949336-88998778887704881999861535434698667428665456234421133564434
Q ss_pred CC-CCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHH
Q ss_conf 78-88751189822577741128886530000158998789999999
Q 003472 692 TG-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAA 737 (817)
Q Consensus 692 gg-Gy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaal 737 (817)
+. | .-+|.+++.....+..............+++...|...+.+.
T Consensus 249 ~~~G-~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 294 (396)
T d2q7wa1 249 GLYN-ERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVV 294 (396)
T ss_dssp TCGG-GCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred CCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 4457-774424466068999998655566655044457878999999
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=98.17 E-value=0.00018 Score=43.22 Aligned_cols=91 Identities=15% Similarity=0.111 Sum_probs=61.7
Q ss_pred CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC----CHHHHCCCCCCE---EECCCC
Q ss_conf 8079999945334689731289889999999976239939985110065655631----023000899962---200433
Q 003472 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE----TTADLLGCVPDI---ACYGKL 690 (817)
Q Consensus 618 ~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~----~a~e~~gv~PDI---itlgK~ 690 (817)
.+..++++-.- +.=.|.+. +.+.+++|.++|++|++++|.||++.++.-.+.. .........+.. ..++|.
T Consensus 174 ~~~~~iii~~p-~NPTG~~~-s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~ 251 (401)
T d7aata_ 174 EKSIILLHACA-HNPTGVDP-RQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKN 251 (401)
T ss_dssp TTCEEEEESSS-CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTT
T ss_pred CCEEEEEECCC-CCCCCCCC-CHHHHHHHHHHHHCCEEEEEEECCCHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 76189996478-89855458-99999999998735637999863614431488655335666653220113406751330
Q ss_pred CCC-CCCCCEEEEECHHHHHHH
Q ss_conf 478-887511898225777411
Q 003472 691 LTG-GVIPLAATLATNAVFDSF 711 (817)
Q Consensus 691 Lgg-Gy~Plsavl~~~~i~e~~ 711 (817)
.+- | .-+|.+++..++.+..
T Consensus 252 ~~~~G-~RiG~~~~~~~~~~~~ 272 (401)
T d7aata_ 252 MGLYG-ERAGAFTVICRDAEEA 272 (401)
T ss_dssp SCCGG-GCEEEEEEECSSHHHH
T ss_pred CEEEC-CCCCEEECCHHHHHHH
T ss_conf 00551-5531021261888889
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=98.16 E-value=4.3e-05 Score=47.15 Aligned_cols=89 Identities=11% Similarity=0.076 Sum_probs=55.7
Q ss_pred CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC--HH-HHCCCCCCE---EECCCCCC
Q ss_conf 0799999453346897312898899999999762399399851100656556310--23-000899962---20043347
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET--TA-DLLGCVPDI---ACYGKLLT 692 (817)
Q Consensus 619 ~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~--a~-e~~gv~PDI---itlgK~Lg 692 (817)
+...+++-.- +.=.|... +.+.+++|.++|++|++++|.||+..++--.+... .. ...+..... ..+||.++
T Consensus 173 ~~~~~~~~~p-~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~ 250 (397)
T d3tata_ 173 RSIVLLHPCC-HNPTGADL-TNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFS 250 (397)
T ss_dssp SCCCEECSSS-CSSSCCCC-CHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHT
T ss_pred CCEEEEECCC-CCCCCEEC-CHHHHHHHHHHHHHCCEEEEEEHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 5289982689-99978417-889999999998536946994155310016975331145544422773599844766533
Q ss_pred C-CCCCCEEEEECHHHHHH
Q ss_conf 8-88751189822577741
Q 003472 693 G-GVIPLAATLATNAVFDS 710 (817)
Q Consensus 693 g-Gy~Plsavl~~~~i~e~ 710 (817)
- | +-+|.+++.....+.
T Consensus 251 ~~G-~RiG~~~~~~~~~~~ 268 (397)
T d3tata_ 251 LYG-ERVGGLSVMCEDAEA 268 (397)
T ss_dssp BTT-TCCBCCEEECSSTTH
T ss_pred CCC-CCCCCCCCCHHHHHH
T ss_conf 357-651211001167899
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=98.14 E-value=0.00021 Score=42.76 Aligned_cols=229 Identities=14% Similarity=0.026 Sum_probs=117.2
Q ss_pred EEEEECCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-C-CCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99910586038983766754451220356522357899899799999999887315-5-589999996799999999831
Q 003472 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG-H-VMFPENVYEPALECAELLLQG 455 (817)
Q Consensus 378 ~i~~~~G~~~~i~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~-~-~~~~~~~~~~~~eLae~L~~~ 455 (817)
.|.-+-|.| +|.+|+ . .- .|.|.+|+++.++... + +....+.-+....+++.+...
T Consensus 28 ~InL~iG~~---~d~~g~----~--------------~~-~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~ 85 (394)
T d2ay1a_ 28 KIDLGVGVY---KDATGH----T--------------PI-MRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGD 85 (394)
T ss_dssp CEECCCCSC---CCTTSC----C--------------CC-CHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGG
T ss_pred CEECCCCCC---CCCCCC----C--------------CC-CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 788517876---588899----8--------------98-8899999999850887898899777899999999997365
Q ss_pred CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 19998661999078678999999999998530244100024877645555208999818744786421112489988776
Q 003472 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (817)
Q Consensus 456 ~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~ 535 (817)
-..........+.+|+.+...++.+. ... + .| ..|+.-+-+|-... ......+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~-~-~g----------------d~V~~p~p~~~~y~-~~~~~~g~------ 139 (394)
T d2ay1a_ 86 GLKSETTATLATVGGTGALRQALELA-RMA-N-PD----------------LRVFVSDPTWPNHV-SIMNFMGL------ 139 (394)
T ss_dssp GCCGGGEEEEEEEHHHHHHHHHHHHH-HHH-C-TT----------------CCEEEEESCCHHHH-HHHHHHTC------
T ss_pred CCCCCCCCCEECCCCHHHHHHHHHHH-HHC-C-CC----------------EEEEEECCCCCCHH-HHHHHCCC------
T ss_conf 65434642000357268888998876-542-8-84----------------49998323210118-99998599------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 77887568765558984222476212148711110002344444567301221026911689999999999974199988
Q 003472 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (817)
Q Consensus 536 ~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~ 615 (817)
..+++|... .+. + ... ...+++.+..
T Consensus 140 ------------------------~~v~~~~~~------------~~~---~-----~~~-----~~~~~~~~~~----- 165 (394)
T d2ay1a_ 140 ------------------------PVQTYRYFD------------AET---R-----GVD-----FEGMKADLAA----- 165 (394)
T ss_dssp ------------------------CEEEEECEE------------TTT---T-----EEC-----HHHHHHHHHT-----
T ss_pred ------------------------EEEEECCCC------------HHC---C-----CCC-----CHHHHHHHHH-----
T ss_conf ------------------------799941430------------101---4-----422-----0268888764-----
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHH--H-HCCCCCC---EEECCC
Q ss_conf 888079999945334689731289889999999976239939985110065655631023--0-0089996---220043
Q 003472 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA--D-LLGCVPD---IACYGK 689 (817)
Q Consensus 616 ~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~--e-~~gv~PD---IitlgK 689 (817)
.......+++-.- +.=.|... +.+.+++|.++|++|++++|.||+..+|.-.+..... . ...-... +..++|
T Consensus 166 ~~~~~~i~~~~~p-~NPTG~~~-s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk 243 (394)
T d2ay1a_ 166 AKKGDMVLLHGCC-HNPTGANL-TLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSK 243 (394)
T ss_dssp CCTTCEEEEESSS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTT
T ss_pred CCCCCEEEEECCC-CCCCCCCC-CHHHHHHHHHHHHCCEEEEEEECCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 1368689994799-99899989-999999999875304289987525122211666664045544443245443345556
Q ss_pred CCCC-CCCCCEEEEECHHHHHHH
Q ss_conf 3478-887511898225777411
Q 003472 690 LLTG-GVIPLAATLATNAVFDSF 711 (817)
Q Consensus 690 ~Lgg-Gy~Plsavl~~~~i~e~~ 711 (817)
..+. | +-++.+.+.....+..
T Consensus 244 ~~~~~G-~R~G~~~~~~~~~~~~ 265 (394)
T d2ay1a_ 244 NFGIYR-ERTGCLLALCADAATR 265 (394)
T ss_dssp TTTCGG-GCEEEEEEECSSHHHH
T ss_pred CCCCCC-CCCCCHHHCHHHHHHH
T ss_conf 666776-5420103042689999
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=98.14 E-value=0.00021 Score=42.73 Aligned_cols=246 Identities=13% Similarity=0.056 Sum_probs=134.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 99996799999999831199986619990786789999999999985302441000248776455552089998187447
Q 003472 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (817)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG 518 (817)
...++....|+++|+++-+ .+.++.++||-.|+-+++.... +.| ..||+.+..|+|
T Consensus 54 R~~nPT~~~LE~~la~LE~---~~~a~~~~SGmaAi~~~~~~l~-----~~g----------------d~il~~~~~Yg~ 109 (421)
T d2ctza1 54 RIMNPTVDVLEKRLAALEG---GKAALATASGHAAQFLALTTLA-----QAG----------------DNIVSTPNLYGG 109 (421)
T ss_dssp TTBCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHC-----CTT----------------CEEEECSCCCHH
T ss_pred CCCCHHHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHHHHC-----CCC----------------CCEEECCCCCCC
T ss_conf 9988789999999999839---9728876186899999987505-----466----------------631222776774
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHH
Q ss_conf 86421112489988776778875687655589842224762121487111100023444445673012210269116899
Q 003472 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (817)
Q Consensus 519 ~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (817)
.....-..- ...|. . +.|-|. .+.
T Consensus 110 t~~l~~~~~--------------~~~gi--------------~----------------~~~~d~-------~~~----- 133 (421)
T d2ctza1 110 TFNQFKVTL--------------KRLGI--------------E----------------VRFTSR-------EER----- 133 (421)
T ss_dssp HHHHHHTHH--------------HHTTC--------------E----------------EEECCT-------TCC-----
T ss_pred HHHHHHHHH--------------HHCCC--------------C----------------CEECCC-------CCC-----
T ss_conf 267899987--------------43230--------------2----------------100366-------557-----
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHC
Q ss_conf 99999999974199988888079999945334689731289889999999976239939985110065655631023000
Q 003472 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (817)
Q Consensus 599 ~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (817)
.+.++..+ ..+..+|++|.. ..-..-++. ++.+.++|+++|+++|+|-.... ..+.++-+
T Consensus 134 --~~~~~~~~--------~~~t~li~~Etp-sNP~l~v~D----i~~i~~iA~~~g~~~vvDnT~a~-----tP~~~~Pl 193 (421)
T d2ctza1 134 --PEEFLALT--------DEKTRAWWVESI-GNPALNIPD----LEALAQAAREKGVALIVDNTFGM-----GGYLLRPL 193 (421)
T ss_dssp --HHHHHHHC--------CTTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGG-----GGTSCCGG
T ss_pred --CCHHCCCC--------CCCCEEEEECCC-CCCEEEECC----HHHHHHHHHHCCCCEEECCCCCC-----CCEECCCC
T ss_conf --40000225--------777269997179-865267535----58899988744973674353233-----52550122
Q ss_pred CCCCCEE--ECCCCCCC-CCCCCEEEEECHHHHH-HHCCC--CCCCEEECC-----------------------CCCCCC
Q ss_conf 8999622--00433478-8875118982257774-11288--865300001-----------------------589987
Q 003472 679 GCVPDIA--CYGKLLTG-GVIPLAATLATNAVFD-SFVGD--SKLKALLHG-----------------------HSYSAH 729 (817)
Q Consensus 679 gv~PDIi--tlgK~Lgg-Gy~Plsavl~~~~i~e-~~~~~--~~~~~~~h~-----------------------~T~~gn 729 (817)
..-.||+ ...|-++| |=+-.|+++.+++... ..... ....+..|+ .--..+
T Consensus 194 ~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~s 273 (421)
T d2ctza1 194 AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALG 273 (421)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCC
T ss_pred CCCCCEEEEECHHHCCCCCCEEEEEEECCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 35886799861333368887578999727731455245511257723431337998843078999999999885358799
Q ss_pred HHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE-------------------EEEEEEEEE
Q ss_conf 8999999999999519670120899999999999999999987399924197-------------------551699999
Q 003472 730 ALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV-------------------ALGTLCAIE 790 (817)
Q Consensus 730 Pla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~Vr-------------------G~Glm~gIe 790 (817)
|..|--.+..|+-+.- ..++..+++.. +.+.+++||.|..|. |.|.|+.|+
T Consensus 274 P~~a~l~~rgl~TL~l--Rm~~~~~nA~~--------vA~~L~~hp~V~~V~yPgL~s~p~~~~a~~~~~g~~G~~~sf~ 343 (421)
T d2ctza1 274 PFEAWVVLLGMETLSL--RAERHVENTLH--------LAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFG 343 (421)
T ss_dssp HHHHHHHHHHHTTHHH--HHHHHHHHHHH--------HHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEE
T ss_pred HHHHHHHHCCCCCHHH--HHHHHHHHHHH--------HHHHHCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCEEEEEE
T ss_conf 7999988567740056--79999998999--------8764414897469966874788239999873479975289998
Q ss_pred EECC
Q ss_conf 7107
Q 003472 791 LQAA 794 (817)
Q Consensus 791 l~~~ 794 (817)
+...
T Consensus 344 l~~~ 347 (421)
T d2ctza1 344 LKGG 347 (421)
T ss_dssp ETTH
T ss_pred ECCC
T ss_conf 4499
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=98.05 E-value=0.00019 Score=43.06 Aligned_cols=90 Identities=13% Similarity=0.073 Sum_probs=58.2
Q ss_pred CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC---CHH-HHCCC-CCCEE--ECCCC
Q ss_conf 8079999945334689731289889999999976239939985110065655631---023-00089-99622--00433
Q 003472 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE---TTA-DLLGC-VPDIA--CYGKL 690 (817)
Q Consensus 618 ~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~---~a~-e~~gv-~PDIi--tlgK~ 690 (817)
.....+++-+- +.=.|.+. +.+.+++|.++|++|++++|.||++..+..-+.. +.. ..... ...++ .++|.
T Consensus 182 ~~~~~il~~~P-~NPTG~v~-s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~ 259 (412)
T d1ajsa_ 182 EFSIFVLHACA-HNPTGTDP-TPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKN 259 (412)
T ss_dssp TTCEEEEESSS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTT
T ss_pred CCCEEEEECCC-CCCCCCCC-CHHHHHHHHHHHHHCCEEEEECHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 77389995589-99868789-99999999999863897898307656540598656515666544412432123466322
Q ss_pred CCC-CCCCCEEEEECHHHHHH
Q ss_conf 478-88751189822577741
Q 003472 691 LTG-GVIPLAATLATNAVFDS 710 (817)
Q Consensus 691 Lgg-Gy~Plsavl~~~~i~e~ 710 (817)
.+. | .-++.+++.....+.
T Consensus 260 ~~~~G-~R~G~~~~~~~~~~~ 279 (412)
T d1ajsa_ 260 FGLYN-ERVGNLTVVAKEPDS 279 (412)
T ss_dssp SCCGG-GCEEEEEEECSSHHH
T ss_pred CCCCC-CCCCCCCCCHHHHHH
T ss_conf 35777-773454456167889
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=97.83 E-value=0.00078 Score=39.16 Aligned_cols=310 Identities=10% Similarity=-0.027 Sum_probs=144.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCCC--CCCCCCHHHHHHHHHHHHHCCCCC--CC--EEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf 9899799999999887315558--999999679999999983119998--66--19990786789999999999985302
Q 003472 415 ATLQIELARDMGYTAARFGHVM--FPENVYEPALECAELLLQGVGKGW--AS--RAYFSDNGSTAIEIALKMAFRKFSFD 488 (817)
Q Consensus 415 h~~~p~I~~Ai~~q~~~~~~~~--~~~~~~~~~~eLae~L~~~~~~~~--~~--~v~f~~SGseAvE~ALKlA~r~~t~~ 488 (817)
+- +|++.+.+.+.+++-.... +| ..++...++..+|+++++.+. .. --.++.+|||||..|+..|++.|..+
T Consensus 65 ~~-~~~~~~l~~~~~~~N~~~~~~~P-~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~ 142 (450)
T d1pmma_ 65 WD-DENVHKLMDLSINKNWIDKEEYP-QSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKR 142 (450)
T ss_dssp CC-CHHHHHHHHHTTTCBTTCTTTSH-HHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf 89-88999999999734778854483-08999999999999982899654678767415756799999999999999988
Q ss_pred C-CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC-CC
Q ss_conf 4-410002487764555520899981874478642111248998877677887568765558984222476212148-71
Q 003472 489 H-EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PE 566 (817)
Q Consensus 489 ~-G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~-P~ 566 (817)
. +. + ......+++. ...|-+..-+...-+-. ...++. +.
T Consensus 143 ~~~~-----g-----~~~~~~~~~~-~~~H~s~~Kaa~~~gi~----------------------------~~~v~~~~~ 183 (450)
T d1pmma_ 143 MEAA-----G-----KPTDKPNLVC-GPVQICWHKFARYWDVE----------------------------LREIPMRPG 183 (450)
T ss_dssp HHHH-----T-----CCCSCCEEEE-SSCCHHHHHHHHHTTCE----------------------------EEECCCBTT
T ss_pred HHHC-----C-----CCCCCCEEEE-CCCHHHHHHHHHHCCCC----------------------------CEEEEECCC
T ss_conf 6640-----7-----8877715885-55279999999982997----------------------------617634188
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf 11100023444445673012210269116899999999999741999888880799999453346897312898899999
Q 003472 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646 (817)
Q Consensus 567 ~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~L 646 (817)
.++ - | .+.+++.++ +..++|++--. ....|.+.| ..-+..+
T Consensus 184 ~~~-----------~----------d--------~~~L~~~i~--------~~t~~Vv~t~g-tt~tG~~dp-v~~i~~i 224 (450)
T d1pmma_ 184 QLF-----------M----------D--------PKRMIEACD--------ENTIGVVPTFG-VTYTGNYEF-PQPLHDA 224 (450)
T ss_dssp BCS-----------C----------C--------HHHHHHHCC--------TTEEEEECBBS-CTTTCBBCC-HHHHHHH
T ss_pred CCC-----------C----------C--------HHHHHHHHH--------HCCEEEEEEEE-ECCCCCCCC-CCHHHHH
T ss_conf 875-----------8----------4--------999998752--------18627996004-516787265-1156678
Q ss_pred ---HHHHHHCCCCEEEEEEEECCCCCCCCCHHHH----CCC-CCCEEEC-CCCCCCCCCCCEEEEECHHHHHH--HCCCC
Q ss_conf ---9997623993998511006565563102300----089-9962200-43347888751189822577741--12888
Q 003472 647 ---VKECQNRKIPVIFDEVFTGFWRLGVETTADL----LGC-VPDIACY-GKLLTGGVIPLAATLATNAVFDS--FVGDS 715 (817)
Q Consensus 647 ---r~lc~~~gilLI~DEV~TGfGRtG~~~a~e~----~gv-~PDIitl-gK~LggGy~Plsavl~~~~i~e~--~~~~~ 715 (817)
.++|+++|+.+-+|=++.|+-- .|...+ +++ ..|.+++ +-..+.+...+|+++.+++-... +....
T Consensus 225 ~~~~~~a~~~~i~lHVDAA~gG~~~---p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~~~~~~~ 301 (450)
T d1pmma_ 225 LDKFQADTGIDIDMHIDAASGGFLA---PFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNV 301 (450)
T ss_dssp HHHHHHHHCCCCCEEEECTTGGGTH---HHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEE
T ss_pred HHHHHHHHCCCCEEEEEHHHCCCEE---EEECHHHHHHHCCCCEEEEECCHHHCCCCCCCEEEEEECCHHHHHHHCCCCC
T ss_conf 9999887416937995301016341---1212024433024663575247433058887726898557666333213145
Q ss_pred C---CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE-----EEE-E
Q ss_conf 6---530000158998789999999999995196701208999999999999999999873999241975-----516-9
Q 003472 716 K---LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-----LGT-L 786 (817)
Q Consensus 716 ~---~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG-----~Gl-m 786 (817)
. .........++.+.....+.-+++..+-.+++ +...++...+..+|.+ .+++.+.+. +.. .++ .
T Consensus 302 ~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~-~~~~~~~~~la~~l~~----~L~~~~~~e-l~~~~~p~~~l~~ 375 (450)
T d1pmma_ 302 DYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGY-TKVQNASYQVAAYLAD----EIAKLGPYE-FICTGRPDEGIPA 375 (450)
T ss_dssp EETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----HHHTTSCEE-EEEECCTTTBSSE
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----HHHHCCCEE-EEECCCCCCCEEE
T ss_conf 767887577762575411788888888864317888-8888888877899999----997379859-9967988871279
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99997107977771129999999998298
Q 003472 787 CAIELQAAGCNAGYCLIELFLYNFLTTGM 815 (817)
Q Consensus 787 ~gIel~~~~~~~~~~~~~~~~~~~l~~G~ 815 (817)
..+.+.+.. ...+. ...+...+.++|.
T Consensus 376 V~Fr~~~~~-~~~~~-~~~l~~~L~~~Gw 402 (450)
T d1pmma_ 376 VCFKLKDGE-DPGYT-LYDLSERLRLRGW 402 (450)
T ss_dssp EEEEECTTC-CCSSC-HHHHHHHHHTTTC
T ss_pred EEEECCCCC-CCCCC-HHHHHHHHHHCCC
T ss_conf 999657866-68978-9999999997598
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.70 E-value=0.001 Score=38.37 Aligned_cols=85 Identities=19% Similarity=0.120 Sum_probs=45.9
Q ss_pred CCCEEEEECCCCCCCCCCCCCCHHH---HHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CCH
Q ss_conf 7778999589987787899970346---753179-99999975998829999999999995799289999915899-997
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCD---LYRPFR-LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL-VNE 294 (817)
Q Consensus 220 ~~d~~iiEGagg~~~p~~~~~~~~~---la~~l~-~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~-~~~ 294 (817)
.+|+++|..+| ..+.+ ....-+ +.+..+ -.++||.+...|- ..+...+.... .+.+.|+|+.+.+. ...
T Consensus 92 ~~d~vlIDTaG--r~~~d-~~~~~el~~~~~~~~~~~~llv~~a~~~~--~~~~~~~~f~~-~~~~~~~I~TKlDe~~~~ 165 (207)
T d1ls1a2 92 ARDLILVDTAG--RLQID-EPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSVARAFDE-KVGVTGLVLTKLDGDARG 165 (207)
T ss_dssp TCCEEEEECCC--CSSCC-HHHHHHHHHHHHHHCCSEEEEEEEGGGTH--HHHHHHHHHHH-HTCCCEEEEECGGGCSSC
T ss_pred CCCCEEECCCC--CCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCCH--HHHHHHHHHHH-HCCCCEEEEEECCCCCCC
T ss_conf 67640334544--20000-36688999998631873699984345561--68999999986-479970588603765653
Q ss_pred HHHHHHHCC-CCCEEEC
Q ss_conf 989985308-9969865
Q 003472 295 VPLMSYLRN-RVPVLVL 310 (817)
Q Consensus 295 ~~l~~~~~~-~~pvlgi 310 (817)
..+.+.... ++|+..+
T Consensus 166 G~~l~~~~~~~~Pi~~i 182 (207)
T d1ls1a2 166 GAALSARHVTGKPIYFA 182 (207)
T ss_dssp HHHHHHHHHHCCCEEEE
T ss_pred HHHHHHHHHHCCCEEEE
T ss_conf 18999999979898999
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.52 E-value=0.0022 Score=36.28 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=32.6
Q ss_pred CCCCCCCCCE-EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEC
Q ss_conf 8986888893-799808999818999999999951399978998534883
Q 003472 30 PLDLPLSHPT-FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 30 ~~~~~~~~~~-~~i~~t~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
.+.+++..|. +++.|. ||+|||+..+-|+..+. .+|++|+..-
T Consensus 3 ~l~~~~~~p~vi~lvGp-tGvGKTTTiAKLAa~~~-----~~~~kV~lit 46 (213)
T d1vmaa2 3 KLNVPPEPPFVIMVVGV-NGTGKTTSCGKLAKMFV-----DEGKSVVLAA 46 (213)
T ss_dssp CCCCCSSSCEEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCCCCCCCCEEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCCEEEEE
T ss_conf 67679999989999899-99988999999999999-----7799069996
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=97.49 E-value=0.0025 Score=35.97 Aligned_cols=298 Identities=13% Similarity=0.051 Sum_probs=148.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCC---CCCCCHHHHHHHHHHHHHCCCCCCCEEEE-ECCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98997999999998873155589---99999679999999983119998661999-078678999999999998530244
Q 003472 415 ATLQIELARDMGYTAARFGHVMF---PENVYEPALECAELLLQGVGKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHE 490 (817)
Q Consensus 415 h~~~p~I~~Ai~~q~~~~~~~~~---~~~~~~~~~eLae~L~~~~~~~~~~~v~f-~~SGseAvE~ALKlA~r~~t~~~G 490 (817)
|- +|.+.+.+..-...|+.++. ..+.-+...|+-..++++++ ++-+-. ...|+.|.-.|+.|| +.++++++
T Consensus 76 hy-~P~v~~~~~~~~TaYTPYQPaEiSQG~LQalfEfQtmi~eLTG---MdvaNaS~yDGatA~aeA~~ma-~r~~~~~~ 150 (471)
T d1wyub1 76 KY-NPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTG---MDAITLEPAAGAHGELTGILII-RAYHEDRG 150 (471)
T ss_dssp CC-CCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHT---CSEEECCCSSHHHHHHHHHHHH-HHHHHHTT
T ss_pred CC-CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCHHHHHHHHHHHHH-HHHHHHCC
T ss_conf 46-8102104788875528999878889999999999999999958---7763556621778999999888-87765306
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHH
Q ss_conf 10002487764555520899981874478642111248998877677887568765558984222476212148711110
Q 003472 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (817)
Q Consensus 491 ~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~ 570 (817)
. ..+..++.....+|..........+.. ...++.....
T Consensus 151 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~-- 188 (471)
T d1wyub1 151 E------------GRTRRVVLVPDSAHGSNPATASMAGYQ----------------------------VREIPSGPEG-- 188 (471)
T ss_dssp C------------TTTCCEEEEETTSCTHHHHHHHHTTCE----------------------------EEEECBCTTS--
T ss_pred C------------CCCCCCCCCCCCCCCCEEEEEECCCCE----------------------------EECCCCCCCC--
T ss_conf 6------------555544567754454101122013421----------------------------2112342211--
Q ss_pred CCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 00234444456730122102691168999999999997419998888807999994533468973128988999999997
Q 003472 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (817)
Q Consensus 571 ~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc 650 (817)
-.+ .+.++.. ..+.++++++.-. ...|.... ..+.+.+++
T Consensus 189 ---------~~~------------------~~~~~~~--------~~~~~a~v~v~~p-~~~g~~e~----~~~~~~~~~ 228 (471)
T d1wyub1 189 ---------EVD------------------LEALKRE--------LGPHVAALMLTNP-NTLGLFER----RILEISRLC 228 (471)
T ss_dssp ---------SBC------------------HHHHHHH--------CSTTEEEEEECSS-CTTSCCCT----THHHHHHHH
T ss_pred ---------CCC------------------CHHHHHH--------HHCCCCCEEECCC-CCCCCCCC----HHHHHHHHH
T ss_conf ---------211------------------0245554--------3024443000037-87555430----013567787
Q ss_pred HHCCCCEEEEEEEE----CCCCCCCCCHHHHCCCCCCEEECC--C----CCCCCCCCCEEEEECHHHHHHHCCCC-----
Q ss_conf 62399399851100----656556310230008999622004--3----34788875118982257774112888-----
Q 003472 651 QNRKIPVIFDEVFT----GFWRLGVETTADLLGCVPDIACYG--K----LLTGGVIPLAATLATNAVFDSFVGDS----- 715 (817)
Q Consensus 651 ~~~gilLI~DEV~T----GfGRtG~~~a~e~~gv~PDIitlg--K----~LggGy~Plsavl~~~~i~e~~~~~~----- 715 (817)
++.|.++++|=+.- |+-+-|.. --|++++| + ++++|---++.+.+++++...+.+.-
T Consensus 229 h~~g~~~~~~~~~~~~~~~l~~p~~~--------g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~ 300 (471)
T d1wyub1 229 KEAGVQLYYDGANLNAIMGWARPGDM--------GFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGE 300 (471)
T ss_dssp HHHTCEEEEEGGGGGGTTTTCCHHHH--------TCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECS
T ss_pred HHCCCCCCCCCCCHHHHHHCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHCCCCCCEECCCC
T ss_conf 75066520223313555301256764--------5663135534333566556656564011113442037876303787
Q ss_pred --------CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE
Q ss_conf --------653000015899878999999999999519670120899999999999999999987399924197551699
Q 003472 716 --------KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLC 787 (817)
Q Consensus 716 --------~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~Glm~ 787 (817)
+.....-..+.+++.+.+.+|...+.++=.+++ ..+.+.+-....++.++|.. ..+..+. ..-.+.
T Consensus 301 ~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL-~elA~~~~~~A~Yla~~L~~--~G~~~~~---~~~ff~ 374 (471)
T d1wyub1 301 EGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGL-KKAAALAVLNARYLKELLKE--KGYRVPY---DGPSMH 374 (471)
T ss_dssp SCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--TTCBCSS---CSSCCS
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHH--CCCEECC---CCCEEE
T ss_conf 33344688754455200114419999999999997181567-78799999999999998754--5932056---765026
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 999710797777112999999999829899
Q 003472 788 AIELQAAGCNAGYCLIELFLYNFLTTGMHP 817 (817)
Q Consensus 788 gIel~~~~~~~~~~~~~~~~~~~l~~G~~~ 817 (817)
-+.+..+. + -....+.+++++.|+|+
T Consensus 375 EFvv~~~~---~-~~~~~i~k~L~~~G~~~ 400 (471)
T d1wyub1 375 EFVAQPPE---G-FRALDLAKGLLELGFHP 400 (471)
T ss_dssp CEEEBCST---T-CCHHHHHHHHHHTTCCC
T ss_pred EEEECCCC---C-CCHHHHHHHHHHCCCCC
T ss_conf 77432788---9-98999999998749888
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=97.44 E-value=0.0028 Score=35.63 Aligned_cols=283 Identities=14% Similarity=0.029 Sum_probs=137.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 97999999998873155589999996799999999831199986619990786789999999999985302441000248
Q 003472 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (817)
Q Consensus 418 ~p~I~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~ 497 (817)
+|+|.+|+.++. ..| ......+...+..+.|.++++.. .+-++|+.||++|+|+++.-.. +.
T Consensus 12 ~~~V~~am~~~~--~~h--r~~~f~~i~~~~~~~l~~ll~~~-~~~i~~~gsgT~a~e~~~~nl~-----~~-------- 73 (348)
T d1iuga_ 12 HPKALEALARPQ--LHH--RTEAAREVFLKARGLLREAFRTE-GEVLILTGSGTLAMEALVKNLF-----AP-------- 73 (348)
T ss_dssp CHHHHHHHHSCC--CCT--TSHHHHHHHHHHHHHHHHHHTCS-SEEEEEESCHHHHHHHHHHHHC-----CT--------
T ss_pred CHHHHHHHCCCC--CCC--CCHHHHHHHHHHHHHHHHHHCCC-CCEEEEECCHHHHHHHHHHHCC-----CC--------
T ss_conf 899999865788--898--88999999999999999996899-9789995854999999998441-----44--------
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCC
Q ss_conf 77645555208999818744786421112489988776778875687655589842224762121487111100023444
Q 003472 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (817)
Q Consensus 498 ~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~ 577 (817)
..+++.+..++.|.-.....-.... .+..+..|...
T Consensus 74 --------g~~vlv~~~G~f~~~~~~~a~~~~~---------------------------~~~~~~~~~g~--------- 109 (348)
T d1iuga_ 74 --------GERVLVPVYGKFSERFYEIALEAGL---------------------------VVERLDYPYGD--------- 109 (348)
T ss_dssp --------TCEEEEEECSHHHHHHHHHHHHTTC---------------------------EEEEEECCTTC---------
T ss_pred --------CCCCEEECCHHHHHHHHHHHHHCCC---------------------------CCCCCCCCCCC---------
T ss_conf --------6650011242777799998874176---------------------------53322124788---------
Q ss_pred CCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC--C
Q ss_conf 44567301221026911689999999999974199988888079999945334689731289889999999976239--9
Q 003472 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK--I 655 (817)
Q Consensus 578 ~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~g--i 655 (817)
..+. ..+.. ...+.++.+..|.. .|+..+ .+.+.++|++++ +
T Consensus 110 --~~~~----------------------~~~~~----~~~~~v~~~h~eTs----tG~~~~----i~~i~~~~~~~~~~~ 153 (348)
T d1iuga_ 110 --TPRP----------------------EDVAK----EGYAGLLLVHSETS----TGALAD----LPALARAFKEKNPEG 153 (348)
T ss_dssp --CCCT----------------------TTSCC----SSCSEEEEESEETT----TTEECC----HHHHHHHHHHHCTTC
T ss_pred --CCCC----------------------CCCCC----CCCCEEEEEECCHH----HHHHCC----HHHHHHHHHHHHCCC
T ss_conf --6420----------------------12235----67770579721404----443210----889999877641243
Q ss_pred CEEEEEEEECCCCCCCCCHHHHCCCCCCEEEC--CCCCCCCCCCCEEEEECHHHHHHHCCCCCCC-------EEECCCCC
Q ss_conf 39985110065655631023000899962200--4334788875118982257774112888653-------00001589
Q 003472 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDSKLK-------ALLHGHSY 726 (817)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~gv~PDIitl--gK~LggGy~Plsavl~~~~i~e~~~~~~~~~-------~~~h~~T~ 726 (817)
++++|=|++ +|-. ..-.+.+ ..|+++. -|+|+|= -=++.+..+++..+.....+... ....+.|+
T Consensus 154 l~~vDavss-~g~~--~i~~d~~--~iD~~~~~sqK~l~gp-pG~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~~~ 227 (348)
T d1iuga_ 154 LVGADMVTS-LLVG--EVALEAM--GVDAAASGSQKGLMCP-PGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESA 227 (348)
T ss_dssp EEEEECTTT-BTTB--CCCSGGG--TCSEEEEESSSTTCCC-SCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCS
T ss_pred EEECHHHHC-CCCC--CCCCCCC--CCCEEEECCCCCEECC-CCEEEEEECHHHHHHHCCCCCCCCHHHHHHHHCCCCCC
T ss_conf 144003323-5455--4345666--5777886166630028-96145650607776540654456466665310258634
Q ss_pred -CCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCCCCHHHH
Q ss_conf -9878999999999999519670120899999999999999999987399924197551699999710797777112999
Q 003472 727 -SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIEL 805 (817)
Q Consensus 727 -~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~Glm~gIel~~~~~~~~~~~~~~ 805 (817)
+-+...+.+..++|+.+.++ ..++. .+.+.....+.. +.+.. ......+-+. ..+.+|.+.+. -....
T Consensus 228 ~Tp~v~~i~~l~~aL~~~~~~-~~~~~-~~~~~~~~~~~~-~~~~~-gl~~~~~~~s-~~v~~~~~P~g------~~~~~ 296 (348)
T d1iuga_ 228 WTPAINLVLAVAAVLEEVLPR-LEEHL-ALKAWQNALLYG-VGEEG-GLRPVPKRFS-PAVAAFYLPEG------VPYAR 296 (348)
T ss_dssp SCCCHHHHHHHHHHHHHHGGG-HHHHH-HHHHHHHHHHHH-HHHHT-TCEESCSSBC-TTCEEEECCTT------CCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHH-HHHHH-HHCCCHHHCC-CEEEEEECCCC------CCHHH
T ss_conf 434304777899999999998-76899-999999998765-54554-4215736519-94899979999------99999
Q ss_pred HHHHHHHCCC
Q ss_conf 9999998298
Q 003472 806 FLYNFLTTGM 815 (817)
Q Consensus 806 ~~~~~l~~G~ 815 (817)
+...+.++|+
T Consensus 297 ~~~~l~~~gi 306 (348)
T d1iuga_ 297 VKEAFAQRGA 306 (348)
T ss_dssp HHHHHHTTTE
T ss_pred HHHHHHHCCE
T ss_conf 9999997790
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.42 E-value=0.003 Score=35.42 Aligned_cols=86 Identities=13% Similarity=0.040 Sum_probs=47.6
Q ss_pred CCCEEEEECCCCCCCCCCCCCC-HHHHHH---HC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC-CCC
Q ss_conf 7778999589987787899970-346753---17-99999997599882999999999999579928999991589-999
Q 003472 220 MEILCIVETAGGVASPGPSGSL-QCDLYR---PF-RLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG-LVN 293 (817)
Q Consensus 220 ~~d~~iiEGagg~~~p~~~~~~-~~~la~---~l-~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~-~~~ 293 (817)
.+|+++|..+| .+|...... ..++.+ .. ...++||.+...|. +........... .++-++|+.+++ ...
T Consensus 94 ~~d~IlIDTaG--r~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~-~~~~~~~~~~~~--~~~~~lI~TKlDet~~ 168 (211)
T d1j8yf2 94 KMEIIIVDTAG--RHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ-KAYDLASKFNQA--SKIGTIIITKMDGTAK 168 (211)
T ss_dssp TCSEEEEECCC--SCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG-GHHHHHHHHHHH--CTTEEEEEECTTSCSC
T ss_pred CCCEEEEECCC--CCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC-CHHHHHHHHHCC--CCCCEEEEECCCCCCC
T ss_conf 77369985377--676313667899999998625976689998435684-067787665303--6755378860368886
Q ss_pred HHHHHHHHCC-CCCEEEC
Q ss_conf 7989985308-9969865
Q 003472 294 EVPLMSYLRN-RVPVLVL 310 (817)
Q Consensus 294 ~~~l~~~~~~-~~pvlgi 310 (817)
...+.+.... ++|+..+
T Consensus 169 ~G~~l~~~~~~~lPi~~i 186 (211)
T d1j8yf2 169 GGGALSAVAATGATIKFI 186 (211)
T ss_dssp HHHHHHHHHTTTCCEEEE
T ss_pred CCHHHHHHHHHCCCEEEE
T ss_conf 149988999989497999
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=97.41 E-value=0.0005 Score=40.37 Aligned_cols=134 Identities=10% Similarity=0.052 Sum_probs=72.1
Q ss_pred HHHHHHHHHHCCCCEEEEEEEE-CCCCCCCCCHHHHCCCCCCEE--ECCCCCCCCCCCCEEEEEC---HHHHHHHCCCCC
Q ss_conf 9999999762399399851100-656556310230008999622--0043347888751189822---577741128886
Q 003472 643 QRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLAT---NAVFDSFVGDSK 716 (817)
Q Consensus 643 l~~Lr~lc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDIi--tlgK~LggGy~Plsavl~~---~~i~e~~~~~~~ 716 (817)
+++++++|++.|+++++|-.|. |+ -.|..+ -+-+. ..|++ +.-|.|.|- .-+.++++ +++++.+...
T Consensus 182 ~~~~reiad~vga~l~~D~aH~~GL-Ia~g~~-~sP~~-~aDvvt~tThKtlrGP--rggiI~~~~~~~~~~~~i~~a-- 254 (416)
T d1dfoa_ 182 WAKMREIADSIGAYLFVDMAHVAGL-VAAGVY-PNPVP-HAHVVTTTTHKTLAGP--RGGLILAKGGSEELYKKLNSA-- 254 (416)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTHHH-HHHTSS-CCCTT-TSSEEEEESSSTTCCC--SCEEEEESSCCHHHHHHHHHH--
T ss_pred HHHHHHHHHHCCCEEECCHHHHHCC-EECCCC-CCCCC-CCCEEEEEHHHCCCCC--CCEEEEECCCHHHHHHHHHHH--
T ss_conf 7999999875171587221200000-324434-78600-0004652100104687--863898423117689998766--
Q ss_pred CCEEECCCCCCCC-HHHHHHHHHHHHHHCC---CCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEE
Q ss_conf 5300001589987-8999999999999519---67012089999999999999999998739992419755169999971
Q 003472 717 LKALLHGHSYSAH-ALGCAAAAKSIKWFKD---PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQ 792 (817)
Q Consensus 717 ~~~~~h~~T~~gn-Pla~Aaala~L~ile~---~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~Glm~gIel~ 792 (817)
.+.+..+++ .-..|+-..++....+ .+...++.+|++.+.+.|.+. .+.++..-. -.-++-+++.
T Consensus 255 ----vfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~------G~~iv~ggT-dnHlvlvdl~ 323 (416)
T d1dfoa_ 255 ----VFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLER------GYKVVSGGT-DNHLFLVDLV 323 (416)
T ss_dssp ----HTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT------TCEEGGGSC-SSSEEEEECG
T ss_pred ----HCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCCCC-CCCEEEEEEC
T ss_conf ----08653468517789898877998709788999999999999999999838------944336998-8753688730
Q ss_pred CC
Q ss_conf 07
Q 003472 793 AA 794 (817)
Q Consensus 793 ~~ 794 (817)
+.
T Consensus 324 ~~ 325 (416)
T d1dfoa_ 324 DK 325 (416)
T ss_dssp GG
T ss_pred CC
T ss_conf 45
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=4.1e-06 Score=53.64 Aligned_cols=39 Identities=13% Similarity=0.018 Sum_probs=34.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 999999759988299999999999957992899999158
Q 003472 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (817)
Q Consensus 251 ~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~ 289 (817)
..+++|.....-++..+.-.++.++..++++.|+|+|++
T Consensus 199 t~~~lVt~pe~~~~~~~~r~~~~l~~~gi~~~~vVvN~v 237 (296)
T d1ihua1 199 TRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGV 237 (296)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 502674474231799999999999965998408998587
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.32 E-value=0.0039 Score=34.72 Aligned_cols=85 Identities=14% Similarity=0.087 Sum_probs=45.4
Q ss_pred CCCEEEEECCCCCCCCCCCCCCHH------HHHHHC----CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 777899958998778789997034------675317----9999999759988299999999999957992899999158
Q 003472 220 MEILCIVETAGGVASPGPSGSLQC------DLYRPF----RLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (817)
Q Consensus 220 ~~d~~iiEGagg~~~p~~~~~~~~------~la~~l----~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~ 289 (817)
.+|++||..+|- .+.+. ...- .+.+.+ ...++||.+...|- +.......... .+.+-|+|+.+.
T Consensus 91 ~~d~ilIDTaGr--~~~d~-~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~-~~~~~~~~~~~--~~~~~~lIlTKl 164 (211)
T d2qy9a2 91 NIDVLIADTAGR--LQNKS-HLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ-NAVSQAKLFHE--AVGLTGITLTKL 164 (211)
T ss_dssp TCSEEEECCCCC--GGGHH-HHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTH-HHHHHHHHHHH--HSCCCEEEEECC
T ss_pred CCCEEEECCCCC--CCCCH-HHHHHHHHHHHHHHHHCCCCCCEEEEEHHCCCCC-CHHHHHHHHHH--CCCCCEEEEEEC
T ss_conf 998899656887--63207-7899999999998530466860012200123576-33778764421--017864899612
Q ss_pred CC-CCHHHHHHHHC-CCCCEEEC
Q ss_conf 99-99798998530-89969865
Q 003472 290 GL-VNEVPLMSYLR-NRVPVLVL 310 (817)
Q Consensus 290 ~~-~~~~~l~~~~~-~~~pvlgi 310 (817)
++ .....+.+... .++|+..+
T Consensus 165 De~~~~G~~l~~~~~~~~Pi~~i 187 (211)
T d2qy9a2 165 DGTAKGGVIFSVADQFGIPIRYI 187 (211)
T ss_dssp TTCTTTTHHHHHHHHHCCCEEEE
T ss_pred CCCCCCCHHHHHHHHHCCCEEEE
T ss_conf 78887209999999989797999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.27 E-value=0.0044 Score=34.37 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=30.4
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEC
Q ss_conf 8893799808999818999999999951399978998534883
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+-+.+++.|. ||+|||+..+-|+.+++ ++|++|+..-
T Consensus 5 ~~~vi~lvGp-tGvGKTTTiaKLA~~~~-----~~g~kV~lit 41 (207)
T d1okkd2 5 KGRVVLVVGV-NGVGKTTTIAKLGRYYQ-----NLGKKVMFCA 41 (207)
T ss_dssp SSSEEEEECS-TTSSHHHHHHHHHHHHH-----TTTCCEEEEC
T ss_pred CCEEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCCEEEEE
T ss_conf 9779999899-99988999999999999-----7799079998
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=97.25 E-value=0.0017 Score=37.01 Aligned_cols=191 Identities=8% Similarity=-0.094 Sum_probs=96.2
Q ss_pred CHHHHHHHHHHHHHCCCCCC----CCCC----CHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 97999999998873155589----9999----967999999998311999866199907867899999999999853024
Q 003472 418 QIELARDMGYTAARFGHVMF----PENV----YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH 489 (817)
Q Consensus 418 ~p~I~~Ai~~q~~~~~~~~~----~~~~----~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~ 489 (817)
+++|.+|+.+++-.+..... .+.- .+...+..+.|.++++-+....++|++++++++..|..... .
T Consensus 15 p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~~--~---- 88 (360)
T d1w23a_ 15 PKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNL--L---- 88 (360)
T ss_dssp CHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH--C----
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHH--C----
T ss_conf 9999999999987530468654345767889999999999999999689998789994784899999987641--1----
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHH
Q ss_conf 41000248776455552089998187447864211124899887767788756876555898422247621214871111
Q 003472 490 EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569 (817)
Q Consensus 490 G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~ 569 (817)
....+++....+.++....-...-.. . .......+..
T Consensus 89 --------------~~~~~v~~~~~g~~~~~~~~~~~~~~----------------~-----------~~~~~~~~~~-- 125 (360)
T d1w23a_ 89 --------------TKGTIGNYVLTGSWSEKALKEAKLLG----------------E-----------THIAASTKAN-- 125 (360)
T ss_dssp --------------CTTCEEEEEECSHHHHHHHHHHHTTS----------------E-----------EEEEEECGGG--
T ss_pred --------------CCCCCCCEEECCCHHHHHHHHHHHHH----------------H-----------CCEEECCCCC--
T ss_conf --------------46765415532412333478877764----------------0-----------2012024444--
Q ss_pred HCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 00023444445673012210269116899999999999741999888880799999453346897312898899999999
Q 003472 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE 649 (817)
Q Consensus 570 ~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~l 649 (817)
.+... +. +.. .........++.+ .| ...+ +..+.++
T Consensus 126 ---------~~~~~------------------~~----~~~-----~~~~~~~~~~~~~-tg---~~~~----~~~i~~~ 161 (360)
T d1w23a_ 126 ---------SYQSI------------------PD----FSE-----FQLNENDAYLHIT-SN---NTIY----GTQYQNF 161 (360)
T ss_dssp ---------TSCSC------------------CC----GGG-----CCCCTTEEEEEEE-SE---ETTT----TEECSSC
T ss_pred ---------CCCCH------------------HH----HHH-----CCCCCCCCEEEEC-CC---CCCC----CEEEEEC
T ss_conf ---------53201------------------11----220-----0335553213754-88---1665----1044322
Q ss_pred HHHCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCEEEEECHHH
Q ss_conf 7623993998511006565563102300089996220043347888751189822577
Q 003472 650 CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAV 707 (817)
Q Consensus 650 c~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDIitlgK~LggGy~Plsavl~~~~i 707 (817)
|+++|+++|+|=||+ +|- ...-++.+ .-|+.+++|.++.+ -+.+.+..++..
T Consensus 162 ~~~~g~l~ivDavqs-~g~--~~id~~~~--~vd~~~~~~~k~~~-~~~~~~~~~~~~ 213 (360)
T d1w23a_ 162 PEINHAPLIADMSSD-ILS--RPLKVNQF--GMIYAGAQKNLGPS-GVTVVIVKKDLL 213 (360)
T ss_dssp CCCCSSCEEEECTTT-TTS--SCCCGGGC--SEEEEETTTTTSCT-TCEEEEEEHHHH
T ss_pred CCCCEEEEEEECCCC-CCC--CCCCCCCC--CCEEEEECCCCCCC-CCCEEEEECHHH
T ss_conf 146303698611345-343--22435655--42488504434457-765046703434
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=97.17 E-value=0.00068 Score=39.52 Aligned_cols=158 Identities=11% Similarity=-0.018 Sum_probs=70.1
Q ss_pred HHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCEEEEECHHHHHHHCCCCCCC-----
Q ss_conf 999999762399399851100656556310230008999622004334788875118982257774112888653-----
Q 003472 644 RILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLK----- 718 (817)
Q Consensus 644 ~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDIitlgK~LggGy~Plsavl~~~~i~e~~~~~~~~~----- 718 (817)
+.+.++|+++|+++++|-|++ +|- ...-.+ .+..|+.+..|.++.. |.++++...+..+.........
T Consensus 156 ~~i~~~~~~~~al~~vDavss-~g~--~~id~~--~~di~~~s~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (361)
T d2c0ra1 156 AQFKAFPDTGSVPLIGDMSSD-ILS--RPFDLN--QFGLVYAGAQKNLGPS--GVTVVIVREDLVAESPKHLPTMLRYDT 228 (361)
T ss_dssp EECSSCCCCTTSCEEEECTTT-TTS--SCCCGG--GCSEEEEETTTTTCCS--SCEEEEEEGGGSSSCCTTSCGGGCHHH
T ss_pred CEEEEEECCCCCEEEEEEECC-CCC--CCCCCC--CCEEEEEECCCCCCCC--CCCEEEEEHHHHHHCCCCCCCCCCCCC
T ss_conf 157773046884189986033-332--023433--4325897413345245--673799876876627443223324120
Q ss_pred -EEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCC--CCCEEEEEEEEEEEEEECCC
Q ss_conf -000015899878999999999999519670120899999999999999999987399--92419755169999971079
Q 003472 719 -ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR--TVQRVVALGTLCAIELQAAG 795 (817)
Q Consensus 719 -~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p--~I~~VrG~Glm~gIel~~~~ 795 (817)
...........+.........+......+.......+.+.....+...........+ ...+.|.. ....+.+.+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~-~~~~~~~~~~- 306 (361)
T d2c0ra1 229 YVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSD-MNITFRLASE- 306 (361)
T ss_dssp HHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCS-SEEEEECSCH-
T ss_pred CCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCC-EEEEEECCCC-
T ss_conf 00333101466420230115677766502424777789999998756665404654345777431454-3999978985-
Q ss_pred CCCCCCHHHHHHHHHHHCCC
Q ss_conf 77771129999999998298
Q 003472 796 CNAGYCLIELFLYNFLTTGM 815 (817)
Q Consensus 796 ~~~~~~~~~~~~~~~l~~G~ 815 (817)
.....+...+-++|+
T Consensus 307 -----~~~~~~~~~L~~~GI 321 (361)
T d2c0ra1 307 -----ELEKEFVKASEQEGF 321 (361)
T ss_dssp -----HHHHHHHHHHHHTTE
T ss_pred -----CCHHHHHHHHHHCCC
T ss_conf -----469999999997888
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=97.15 E-value=0.006 Score=33.55 Aligned_cols=206 Identities=14% Similarity=0.049 Sum_probs=115.4
Q ss_pred CCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHH-------HHHHHHHHHHCCCCCCCEEEEECCHH
Q ss_conf 51220356522357899899799999999887315558999999679-------99999998311999866199907867
Q 003472 399 GQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPA-------LECAELLLQGVGKGWASRAYFSDNGS 471 (817)
Q Consensus 399 ~~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~~~~~~~~~~~~-------~eLae~L~~~~~~~~~~~v~f~~SGs 471 (817)
+-|+|..+ .+.- .+.|.+|+.+.+..... . +...+... .+.-++++++++.. -+.+.|++++|
T Consensus 2 ~iyld~a~------~~~~-p~~v~ea~~~~~~~~~~-n-p~~~~~~~~~~~~~~~~aR~~ia~l~~~~-~~~i~~~~~~T 71 (376)
T d1eg5a_ 2 RVYFDNNA------TTRV-DDRVLEEMIVFYREKYG-N-PNSAHGMGIEANLHMEKAREKVAKVLGVS-PSEIFFTSCAT 71 (376)
T ss_dssp CEECBTTT------CCCC-CHHHHHHHHHHHHTCCC-C-TTCSSHHHHHHHHHHHHHHHHHHHHHTSC-GGGEEEESCHH
T ss_pred EEEEECCC------CCCC-CHHHHHHHHHHHHHCCC-C-CCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CCCEEEECCHH
T ss_conf 79887863------1669-99999999999987489-8-76546999999999999999999980989-78099979878
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999999999985302441000248776455552089998187447864211124899887767788756876555898
Q 003472 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (817)
Q Consensus 472 eAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p 551 (817)
++.-.++........ .+..++.....+|+........-... |.
T Consensus 72 ~~l~~~~~~~~~~~~------------------~~g~~v~~~~~~~~~~~~~~~~~~~~--------------g~----- 114 (376)
T d1eg5a_ 72 ESINWILKTVAETFE------------------KRKRTIITTPIEHKAVLETMKYLSMK--------------GF----- 114 (376)
T ss_dssp HHHHHHHHHHHHHTT------------------TTCCEEEECTTSCHHHHHHHHHHHHT--------------TC-----
T ss_pred HHHHHHHHCCCCCCC------------------CCCCCCCCCCCCCHHHHHHHHHHHHC--------------CC-----
T ss_conf 997766621443322------------------35763223432220128999999866--------------98-----
Q ss_pred CCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 42224762121487111100023444445673012210269116899999999999741999888880799999453346
Q 003472 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (817)
Q Consensus 552 ~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg 631 (817)
....+|..... . -| .+.+++.+. +++..|++--+ ..
T Consensus 115 ------~v~~vp~~~~~-------------~--------id--------~~~l~~~i~--------~~t~lv~is~v-~~ 150 (376)
T d1eg5a_ 115 ------KVKYVPVDSRG-------------V--------VK--------LEELEKLVD--------EDTFLVSIMAA-NN 150 (376)
T ss_dssp ------EEEECCBCTTS-------------C--------BC--------HHHHHHHCC--------TTEEEEEEESB-CT
T ss_pred ------EEEEECCCCCC-------------E--------EC--------HHHHHHHCC--------CCCEEEEEECC-CC
T ss_conf ------89997689887-------------2--------77--------899998648--------99608999777-66
Q ss_pred CCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCCCCHHHHCCCCCCEE--ECCCCCCCCCCCCEEEEECHH
Q ss_conf 8973128988999999997623--99399851100656556310230008999622--004334788875118982257
Q 003472 632 AGGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNA 706 (817)
Q Consensus 632 ~gG~~~~~~~fl~~Lr~lc~~~--gilLI~DEV~TGfGRtG~~~a~e~~gv~PDIi--tlgK~LggGy~Plsavl~~~~ 706 (817)
..|...+ .+.+.++|+.+ ++++++|.+|. +|..-. +.....+|++ +.-|-+|. .-.+++..+++
T Consensus 151 ~tG~~~~----~~~i~~~~~~~~~~~~~~vD~~q~-~g~~~~----d~~~~~~D~~~~s~~K~~gp--~G~~~l~~~~~ 218 (376)
T d1eg5a_ 151 EVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKIPF----SLEKLEVDYASFSAHKFHGP--KGVGITYIRKG 218 (376)
T ss_dssp TTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSCC----CCTTTCCSEEEEEGGGGTSC--TTCEEEEECTT
T ss_pred CCCEEEE----EHHHHHHHHHCCCCCEEEEEEEEC-CCCCCC----CCCCCCCCCEECCCCEEECC--CCCEEEEECCC
T ss_conf 5412554----124445543114675047875312-465455----20004865000125434357--88626885257
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.05 E-value=0.0024 Score=36.07 Aligned_cols=135 Identities=10% Similarity=0.029 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEE-CCCCCCCCCHHHHCCCCCCEE--ECCCCCCCCCCCCEEEEECHHHHHHHCCCCCCC
Q ss_conf 99999999762399399851100-656556310230008999622--004334788875118982257774112888653
Q 003472 642 FQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLK 718 (817)
Q Consensus 642 fl~~Lr~lc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDIi--tlgK~LggGy~Plsavl~~~~i~e~~~~~~~~~ 718 (817)
-+++++++|++.|+.|++|=.|. |+ -.|..+ .+-+. ..|++ +.-|.|.|- .-+.+++++++.+.+...
T Consensus 179 d~~~~reIad~vga~l~~D~aH~~GL-Ia~g~~-~~P~~-~aDvvt~tThKtlrGP--rgg~I~~~~~~~~~i~~a---- 249 (405)
T d1kl1a_ 179 DFAKFREIADEVGAYLMVDMAHIAGL-VAAGLH-PNPVP-YAHFVTTTTHKTLRGP--RGGMILCQEQFAKQIDKA---- 249 (405)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTTHHH-HHTTSS-CCSTT-TCSEEEEESSSTTCCC--SCEEEEECHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHCCEEECCHHHHHHH-HHHHHC-CCHHH-HHHHEECCCCCCCCCC--CCCEEEECCHHHHHHHHH----
T ss_conf 86999998764198786035667665-443126-98465-2110323355334677--773587500357777765----
Q ss_pred EEECCCCCCCCHHHHHHHHH-HHHH-HCC--CCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECC
Q ss_conf 00001589987899999999-9999-519--6701208999999999999999999873999241975516999997107
Q 003472 719 ALLHGHSYSAHALGCAAAAK-SIKW-FKD--PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (817)
Q Consensus 719 ~~~h~~T~~gnPla~Aaala-~L~i-le~--~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~Glm~gIel~~~ 794 (817)
.+.+..+++-...-||+| ++.. ++. .+...++.+|++.+.+.|.+. .+.++..-. ---++-+++.+.
T Consensus 250 --vfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~------G~~vv~ggT-d~H~vlvdl~~~ 320 (405)
T d1kl1a_ 250 --IFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE------GFTLVSGGT-DNHLLLVDLRPQ 320 (405)
T ss_dssp --HTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT------TCEEGGGSC-SSSEEEEECGGG
T ss_pred --HCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC------CCEEECCCC-CCCEEECCCCCC
T ss_conf --08653468415678899999998738388999999999888999998648------943435887-664563243446
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=96.98 E-value=0.0085 Score=32.58 Aligned_cols=90 Identities=12% Similarity=0.104 Sum_probs=61.8
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC-H------HHHCCCCCCEE---E
Q ss_conf 880799999453346897312898899999999762399399851100656556310-2------30008999622---0
Q 003472 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-T------ADLLGCVPDIA---C 686 (817)
Q Consensus 617 ~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~-a------~e~~gv~PDIi---t 686 (817)
.....++++-+- +.=.|... +.+.++++.++|+++++++|.||+..+|.--+... . .+..+..+..+ .
T Consensus 174 ~~~~~~i~i~~P-~NPTG~~~-s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 251 (412)
T d1yaaa_ 174 PEGSIFVLHSCA-HNPTGLDP-TSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQS 251 (412)
T ss_dssp CTTCEEEEECSS-CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEE
T ss_pred CCCEEEEEECCC-CCCCCCCC-CHHHHHHHHHHHCCCCEEEEECCEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 875179994489-99854458-9999999986611488797452001000058865652443222321246887599982
Q ss_pred CCCCCCC-CCCCCEEEEECHHHHH
Q ss_conf 0433478-8875118982257774
Q 003472 687 YGKLLTG-GVIPLAATLATNAVFD 709 (817)
Q Consensus 687 lgK~Lgg-Gy~Plsavl~~~~i~e 709 (817)
+||.++- | +-+|.+++..++.+
T Consensus 252 ~SK~~~~~G-~RiG~~~~~~~~~~ 274 (412)
T d1yaaa_ 252 FAKNAGMYG-ERVGCFHLALTKQA 274 (412)
T ss_dssp CTTTSCCGG-GCEEEEEEECCSCT
T ss_pred CCCCCCCCC-CCEEEEEECHHHHH
T ss_conf 577645676-76079997505666
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.29 E-value=0.016 Score=30.87 Aligned_cols=137 Identities=12% Similarity=0.027 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEEE-CCCCCCCCCHHHHCCCCCCEE--ECCCCCCCCCCCC-EEEEECHH--------
Q ss_conf 98899999999762399399851100-656556310230008999622--0043347888751-18982257--------
Q 003472 639 DPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPL-AATLATNA-------- 706 (817)
Q Consensus 639 ~~~fl~~Lr~lc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDIi--tlgK~LggGy~Pl-savl~~~~-------- 706 (817)
-+--+++++++|++.|+.|++|=.|. |+ -.|..+ .+-+. ..|++ +.-|.|.| |= +.++++++
T Consensus 193 r~~d~~~~reIad~vga~l~~D~aH~aGL-IA~g~~-~sPl~-~aDvvt~tTHKtlrG---PrgGiI~~~~~~~~~~~~~ 266 (470)
T d1rv3a_ 193 RNLDYGRLRKIADENGAYLMADMAHISGL-VVAGVV-PSPFE-HCHVVTTTTHKTLRG---CRAGMIFYRRGVRSVDPKT 266 (470)
T ss_dssp SCCCHHHHHHHHHHTTCEEEEECTTTHHH-HHHTSS-CCGGG-TCSEEEEESSGGGCC---CSCEEEEEECSBCC-----
T ss_pred CCCCHHHHHHHHHCCCCEEEECCHHHHHH-CCCCCC-CCHHH-EEEEEEEEHHHHCCC---CCCEEEEECCCCCCCCCCC
T ss_conf 66778999877750697698022102231-004556-98234-023566441022068---8633899714423355311
Q ss_pred -------HHHHHCCCCCCCEEECCCCCCCCHHHHHHHHH-HHHHHCCC---CCHHCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf -------77411288865300001589987899999999-99995196---70120899999999999999999987399
Q 003472 707 -------VFDSFVGDSKLKALLHGHSYSAHALGCAAAAK-SIKWFKDP---QTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 707 -------i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala-~L~ile~~---~~~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (817)
+.+.+... .+-++.+++-...-||+| ++..+.++ +...++.+|++.+.+.|.+. .++
T Consensus 267 ~~~~~~~~~~~i~~a------vFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~------G~~ 334 (470)
T d1rv3a_ 267 GKEILYNLESLINSA------VFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL------GYK 334 (470)
T ss_dssp --CCBCCHHHHHHHH------HTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT------TCE
T ss_pred CCHHHHHHHHHHHHH------CCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC------CCE
T ss_conf 422579999997534------38664333005677899999998628688999999999999999999967------966
Q ss_pred CCCEEEEEEEEEEEEEECC
Q ss_conf 9241975516999997107
Q 003472 776 TVQRVVALGTLCAIELQAA 794 (817)
Q Consensus 776 ~I~~VrG~Glm~gIel~~~ 794 (817)
++..-. ..-+.-+++.+.
T Consensus 335 v~~ggT-dnHlvlvdl~~~ 352 (470)
T d1rv3a_ 335 IVTGGS-DNHLILVDLRSK 352 (470)
T ss_dssp EGGGSC-SSSEEEEEGGGG
T ss_pred ECCCCC-CCCEEEEEECCC
T ss_conf 415988-775488862234
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=96.05 E-value=0.033 Score=28.83 Aligned_cols=265 Identities=13% Similarity=0.051 Sum_probs=142.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCCEEEE-ECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 9679999999983119998661999-078678999999999998530244100024877645555208999818744786
Q 003472 442 YEPALECAELLLQGVGKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (817)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~~~~v~f-~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t 520 (817)
.+...+|.+.|+++++ ++.+.+ ...|+.|.-.|+.++ +.++++ ++++. ..+-|..+
T Consensus 107 Lq~l~e~q~~l~eltG---md~~n~s~~~ga~a~~~~~~~~-~~~~~~------------------~~~~v-~~~~~p~~ 163 (437)
T d1wyua1 107 LQATFEYQTMIAELAG---LEIANASMYDGATALAEGVLLA-LRETGR------------------MGVLV-SQGVHPEY 163 (437)
T ss_dssp HHHHHHHHHHHHHHHT---SSEECSCBSSHHHHHHHHHHHH-HHHHTC------------------CEEEE-ETTSCHHH
T ss_pred HHHHHHHHHHHHHHHC---CCCCCCCCHHHHHHHHHHHHHH-HHHHCC------------------CCCCC-CCCCCHHH
T ss_conf 9999999999998609---7743657307889999999998-764033------------------21000-36568577
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHH
Q ss_conf 42111248998877677887568765558984222476212148711110002344444567301221026911689999
Q 003472 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (817)
Q Consensus 521 ~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (817)
.+++..+... .|. .+..++. ++. +.+
T Consensus 164 ~~v~~t~a~~-------------~g~-----------~vv~v~~----------------~~~------~~~-------- 189 (437)
T d1wyua1 164 RAVLRAYLEA-------------VGA-----------KLLTLPL----------------EGG------RTP-------- 189 (437)
T ss_dssp HHHHHHHHHH-------------TTC-----------EEEEECC----------------BTT------BCC--------
T ss_pred HHHHHHHCCC-------------CEE-----------EEEEEEC----------------CCC------CCH--------
T ss_conf 6655542023-------------202-----------5776300----------------146------540--------
Q ss_pred HHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCCC
Q ss_conf 99999997419998888807999994533468973128988999999997623993998511006565563102300089
Q 003472 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (817)
Q Consensus 601 ~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (817)
.. +-.+++|||++.-- +.-|.+.. ++.+.+++++.|.++|.|=-...++-.-.. ..+
T Consensus 190 -------~~-----~~~~~~Aavmi~~P--nt~G~~ed----~~~i~~~~h~~G~l~~~~ad~~al~~l~~P---g~~-- 246 (437)
T d1wyua1 190 -------LP-----EVGEEVGAVVVQNP--NFLGALED----LGPFAEAAHGAGALFVAVADPLSLGVLKPP---GAY-- 246 (437)
T ss_dssp -------CC-----CCCTTEEEEEEESS--CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTGGGTBCCH---HHH--
T ss_pred -------HH-----HHCCCEEEEEECCC--CCCCCCCC----HHHHHHHHHHCCCEEEEEECHHHHHCCCCC---CCC--
T ss_conf -------55-----53135069997354--45440032----279999863056248864144655142266---546--
Q ss_pred CCCEE-----ECCCCCCCCCCCCEEEEECHHHHHHHCCCC--------CCCEE---------------ECCCCCCCCHHH
Q ss_conf 99622-----004334788875118982257774112888--------65300---------------001589987899
Q 003472 681 VPDIA-----CYGKLLTGGVIPLAATLATNAVFDSFVGDS--------KLKAL---------------LHGHSYSAHALG 732 (817)
Q Consensus 681 ~PDIi-----tlgK~LggGy~Plsavl~~~~i~e~~~~~~--------~~~~~---------------~h~~T~~gnPla 732 (817)
-.||+ +||=.++.|--..|.+.+++++...+.+.- ....+ ..++.+.++.+.
T Consensus 247 GaDi~~g~~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~ 326 (437)
T d1wyua1 247 GADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLT 326 (437)
T ss_dssp TCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHH
T ss_pred CCCEEEECCCEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 66547632524504557786765541223043134555434554334786441110254444454444421024677899
Q ss_pred HHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999995196701208999999999999999999873999241975516999997107977771129999999998
Q 003472 733 CAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLT 812 (817)
Q Consensus 733 ~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~ 812 (817)
+..+...+..+-.+++. ++.+++.....++.++ +.+.+.+..+.-.-.+-.+.+.-+ .....+.+++++
T Consensus 327 a~~a~~Y~~~lG~~GL~-~ia~~a~~~A~yl~~~----L~~~~g~~~~~~~~~f~ef~v~~~------~~~~~i~k~L~d 395 (437)
T d1wyua1 327 ALMGAMYLAALGPEGLR-EVALKSVEMAHKLHAL----LLEVPGVRPFTPKPFFNEFALALP------KDPEAVRRALAE 395 (437)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----HTTSTTCEECSCSSBCSEEEEECS------SCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHH----HHHCCCEECCCCCCEEEEEEEECC------CCHHHHHHHHHH
T ss_conf 99999886523753399-9999999999999998----654589040489970048999789------999999999996
Q ss_pred CCCCC
Q ss_conf 29899
Q 003472 813 TGMHP 817 (817)
Q Consensus 813 ~G~~~ 817 (817)
+|+|+
T Consensus 396 ~G~~~ 400 (437)
T d1wyua1 396 RGFHG 400 (437)
T ss_dssp TTCCC
T ss_pred CCCCC
T ss_conf 79988
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.43 E-value=0.01 Score=32.11 Aligned_cols=37 Identities=14% Similarity=0.084 Sum_probs=33.8
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECC
Q ss_conf 8937998089998189999999999513999789985348830
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (817)
Q Consensus 37 ~~~~~i~~t~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (817)
|+.+-|+|. +|+||||+...|++.|. ++|++|+..|=
T Consensus 1 Mkii~I~G~-~gSGKTTli~~l~~~L~-----~~g~~v~vik~ 37 (165)
T d1xjca_ 1 MNVWQVVGY-KHSGKTTLMEKWVAAAV-----REGWRVGTVKH 37 (165)
T ss_dssp CCEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEEEC
T ss_pred CCEEEEEEC-CCCCHHHHHHHHHHHHH-----HCCCEEEEEEE
T ss_conf 909999809-99989999999999998-----67983799983
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.41 E-value=0.059 Score=27.24 Aligned_cols=49 Identities=8% Similarity=0.099 Sum_probs=37.2
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEC
Q ss_conf 99999871135679988986888893799808999818999999999951399978998534883
Q 003472 14 RRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+.+|..++.|+ .....+=|+|. +|+|||++.-.|++++. .+|++|+..-
T Consensus 41 ~~ll~~~~~~~----------~~~~~IgitG~-pGaGKSTLi~~l~~~~~-----~~g~~vavla 89 (327)
T d2p67a1 41 TQLLDAIMPYC----------GNTLRLGVTGT-PGAGKSTFLEAFGMLLI-----REGLKVAVIA 89 (327)
T ss_dssp HHHHHHHGGGC----------SCSEEEEEEEC-TTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred HHHHHHHHHCC----------CCCEEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCCEEEEC
T ss_conf 99999865316----------98328974389-99989999999999997-----5698332203
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=95.39 E-value=0.06 Score=27.21 Aligned_cols=153 Identities=12% Similarity=-0.009 Sum_probs=72.0
Q ss_pred HHHHCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCEEEEECHHHHHHHCCCCCCC-----EEECC
Q ss_conf 9762399399851100656556310230008999622004334788875118982257774112888653-----00001
Q 003472 649 ECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLK-----ALLHG 723 (817)
Q Consensus 649 lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDIitlgK~LggGy~Plsavl~~~~i~e~~~~~~~~~-----~~~h~ 723 (817)
.|+.+++++++|=++ |++-. . .+..++.-|+...+|.++.+ .+.+.++.++...+......... .....
T Consensus 161 ~~~~~~~~v~vDa~~-~~~~~--~--vd~~~~dv~~~ss~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (360)
T d1bjna_ 161 PDFGADVVVAADFSS-TILSR--P--IDVSRYGVIYAGAQKNIGPA-GLTIVIVREDLLGKANIACPSILDYSILNDNGS 234 (360)
T ss_dssp CCCCTTCCEEEECTT-TTTSS--C--CCGGGCSEEEEETTTTTSST-TCEEEEEEGGGCSCCCTTSCGGGCHHHHHHTTT
T ss_pred ECCCCCCEEEEEEEC-CCCCE--E--EEECCCEEEEEECCCCCCCC-CCCEEEEEEHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 012445225656623-52424--4--36513305999726665447-776267641012211446774112678876532
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHC--CCCCCEEEEEEEEEEEEEECCCCCCCCC
Q ss_conf 58998789999999999995196701208999999999999999999873--9992419755169999971079777711
Q 003472 724 HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS--HRTVQRVVALGTLCAIELQAAGCNAGYC 801 (817)
Q Consensus 724 ~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~--~p~I~~VrG~Glm~gIel~~~~~~~~~~ 801 (817)
.+....+.....+.........+...+...++.......... ....... .......|..+ ..++.+.+. .
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~rs~~-v~~f~~~~~------~ 306 (360)
T d1bjna_ 235 MFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYG-VIDNSDFYRNDVAKRNRSRM-NVPFQLADS------A 306 (360)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HHHHCSSEECCBCGGGBCSS-EEEEEESSG------G
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCCE-EEEEECCCC------C
T ss_conf 024444302788899999886410689999999999999887-55335430125774344523-999875885------2
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 29999999998298
Q 003472 802 LIELFLYNFLTTGM 815 (817)
Q Consensus 802 ~~~~~~~~~l~~G~ 815 (817)
....+...+.++|+
T Consensus 307 ~~~~~~~~l~~~Gi 320 (360)
T d1bjna_ 307 LDKLFLEESFAAGL 320 (360)
T ss_dssp GHHHHHHHHHHTTE
T ss_pred CHHHHHHHHHHCCC
T ss_conf 49999999997898
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.60 E-value=0.025 Score=29.58 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=33.8
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCC
Q ss_conf 89379980899981899999999995139997899853488300
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (817)
Q Consensus 37 ~~~~~i~~t~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi 80 (817)
.|.+.|+|. +|+||||+...|++.|. ++|+++++.|.-
T Consensus 2 ~Pvi~itG~-~GSGKTTL~~~L~~~l~-----~~g~~v~v~~~d 39 (170)
T d1np6a_ 2 IPLLAFAAW-SGTGKTTLLKKLIPALC-----ARGIRPGLIKHT 39 (170)
T ss_dssp CCEEEEECC-TTSCHHHHHHHHHHHHH-----HTTCCEEEEEEC
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCEEEEECCC
T ss_conf 788999918-99989999999999999-----779768774146
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=94.24 E-value=0.03 Score=29.09 Aligned_cols=38 Identities=11% Similarity=0.035 Sum_probs=32.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 99999759988299999999999957992899999158
Q 003472 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (817)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~ 289 (817)
.+++|+....-++..+.-..+.+...+.++.|+|+|+.
T Consensus 185 ~~vlV~~p~~~~~~~~~r~~~~l~~~~~~~~~iV~N~~ 222 (279)
T d1ihua2 185 KVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNS 222 (279)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEE
T ss_pred CCEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 11685460074799999999999845998647998688
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.99 E-value=0.13 Score=25.00 Aligned_cols=38 Identities=18% Similarity=0.292 Sum_probs=30.1
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEC
Q ss_conf 88893799808999818999999999951399978998534883
Q 003472 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 35 ~~~~~~~i~~t~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
.++|.+-|+|. +++|||+++-.|...|. +.+.++..+-
T Consensus 2 ~k~pIIgIaG~-SGSGKTTva~~l~~i~~-----~~~v~~~iI~ 39 (288)
T d1a7ja_ 2 KKHPIISVTGS-SGAGTSTVKHTFDQIFR-----REGVKAVSIE 39 (288)
T ss_dssp TTSCEEEEESC-C---CCTHHHHHHHHHH-----HHTCCEEEEE
T ss_pred CCCCEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCCEEEEE
T ss_conf 98889999899-97809999999999971-----5699769994
|
| >d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: CTP synthase PyrG, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.28 E-value=0.18 Score=24.24 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=32.7
Q ss_pred CCEEEEEC-CCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEC
Q ss_conf 89379980-8999818999999999951399978998534883
Q 003472 37 HPTFQIWS-ANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~~-t~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+|-+||+| -=++.||-.+++.|...|+ ++|++|...|
T Consensus 2 ~kyifvtGGV~S~lGKGi~~asig~ll~-----~~g~~v~~~K 39 (272)
T d1vcoa2 2 RKYVFITGGVVSSLGKGILTSSLGALLR-----ARGYRVTAIK 39 (272)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHH-----HCCCCEEEEE
T ss_conf 2699980882035530899999999999-----6798604774
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=92.87 E-value=0.075 Score=26.58 Aligned_cols=37 Identities=11% Similarity=-0.019 Sum_probs=31.4
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECC
Q ss_conf 8937998089998189999999999513999789985348830
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (817)
Q Consensus 37 ~~~~~i~~t~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (817)
||.+.|.|+ .|+||||++..|++.|. .+|.++..+.+
T Consensus 1 mkiivi~G~-~GsGKTT~~~~La~~L~-----~~~~~~~~~~~ 37 (194)
T d1nksa_ 1 MKIGIVTGI-PGVGKSTVLAKVKEILD-----NQGINNKIINY 37 (194)
T ss_dssp CEEEEEEEC-TTSCHHHHHHHHHHHHH-----TTTCCEEEEEH
T ss_pred CEEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCCEEEEEC
T ss_conf 919999898-99898999999999998-----76998899978
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=92.52 E-value=0.038 Score=28.45 Aligned_cols=116 Identities=13% Similarity=0.065 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEEE-CCCCCCCCCHHHHCCCCCCEE--ECCCCCCCCCCCC-EEEEECH---------
Q ss_conf 98899999999762399399851100-656556310230008999622--0043347888751-1898225---------
Q 003472 639 DPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPL-AATLATN--------- 705 (817)
Q Consensus 639 ~~~fl~~Lr~lc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDIi--tlgK~LggGy~Pl-savl~~~--------- 705 (817)
-+--++++|++|++.|++|++|=.|. |+ -.|..+ .+-+. ..|++ +.-|.|.| |= +.+++++
T Consensus 189 r~~d~~~~reIad~vga~l~~D~aH~aGL-IA~g~~-~sP~~-~aDvvt~tTHKTlrG---PrgGiIl~~~~~~~~~~~~ 262 (463)
T d2a7va1 189 RLIDYARMREVCDEVKAHLLADMAHISGL-VAAKVI-PSPFK-HADIVTTTTHKTLRG---ARSGLIFYRKGVKAVDPKT 262 (463)
T ss_dssp SCCCHHHHHHHHHHTTCEEEEECGGGHHH-HHTTSS-CCGGG-TCSEEEEESSGGGCS---CSCEEEEEECSEEEEETTT
T ss_pred CCCCHHHHHHHHHCCCCEEEECHHHHHHH-HHHHHH-CCHHH-HHHHHHCHHHHHHCC---CCCEEEEECCCCCCCCCCC
T ss_conf 54679999987602466388201345677-666662-58665-542311104354268---8743899725422345555
Q ss_pred ------HHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHH-HHHHCCC---CCHHCHHHHHHHHHHHHHHH
Q ss_conf ------7774112888653000015899878999999999-9995196---70120899999999999999
Q 003472 706 ------AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS-IKWFKDP---QTNHNIIPERRILRELWDLE 766 (817)
Q Consensus 706 ------~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~-L~ile~~---~~~~~l~~~~~~l~~~l~~~ 766 (817)
++.+.+... .+-...+++-...-||+|+ +....++ +...++.+|++.|.+.|.+.
T Consensus 263 ~~~~~~~~~~~i~~a------vFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~ 327 (463)
T d2a7va1 263 GREIPYTFEDRINFA------VFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER 327 (463)
T ss_dssp EEEEECCCHHHHHHH------HTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHH------CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 753115788776410------27652122223368999999987358348999999999999999999868
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=91.90 E-value=0.26 Score=23.10 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=30.5
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEC
Q ss_conf 893799808999818999999999951399978998534883
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~~t~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
...+=|+|. .|+|||++...|++.+. .+|++|+..-
T Consensus 51 ~~~igitG~-pGaGKSTli~~l~~~~~-----~~g~~vaVia 86 (323)
T d2qm8a1 51 AIRVGITGV-PGVGKSTTIDALGSLLT-----AAGHKVAVLA 86 (323)
T ss_dssp SEEEEEECC-TTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CEEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCCEEEEE
T ss_conf 159861179-98889999999999876-----3687513443
|
| >d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: CTP synthase PyrG, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.11 E-value=0.32 Score=22.58 Aligned_cols=37 Identities=11% Similarity=0.204 Sum_probs=33.1
Q ss_pred CCEEEEEC-CCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEC
Q ss_conf 89379980-8999818999999999951399978998534883
Q 003472 37 HPTFQIWS-ANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~~-t~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
||-+||+| .=++.||-++++.|...|+ ++|++|...|
T Consensus 1 mKyifVtGGV~S~lGKGi~~aSig~ll~-----~~g~~V~~~K 38 (273)
T d2vo1a1 1 MKYILVTGGVISGIGKGIIASSVGTILK-----SCGLHVTSIK 38 (273)
T ss_dssp CEEEEEEECSSSSSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHH-----HCCCEEEEEE
T ss_conf 9199991871035521899999999999-----6796157874
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.95 E-value=0.14 Score=24.76 Aligned_cols=36 Identities=14% Similarity=0.016 Sum_probs=29.6
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEC
Q ss_conf 893799808999818999999999951399978998534883
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~~t~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
.|.++|+|. .|+|||++...+++.|. ..|.++.++-
T Consensus 1 ~k~v~ItG~-~GtGKTtl~~~i~~~l~-----~~~~~v~~~~ 36 (189)
T d2i3ba1 1 ARHVFLTGP-PGVGKTTLIHKASEVLK-----SSGVPVDGFY 36 (189)
T ss_dssp CCCEEEESC-CSSCHHHHHHHHHHHHH-----HTTCCCEEEE
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCEEEEEE
T ss_conf 969999889-99719999999999999-----7799799998
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=90.19 E-value=0.13 Score=25.03 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=22.8
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 89379980899981899999999995
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (817)
Q Consensus 37 ~~~~~i~~t~t~~GKT~vs~~L~~~l 62 (817)
.|.|+++|+ +|+|||+++-.|++.|
T Consensus 2 ~k~I~l~G~-~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 2 KRNIFLVGP-MGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCCEEEECC-TTSCHHHHHHHHHHHT
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHH
T ss_conf 974999899-9999999999999996
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=90.01 E-value=0.17 Score=24.25 Aligned_cols=24 Identities=17% Similarity=0.183 Sum_probs=21.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 3799808999818999999999951
Q 003472 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (817)
Q Consensus 39 ~~~i~~t~t~~GKT~vs~~L~~~l~ 63 (817)
.++++|. +|+||||++-.|.+.|.
T Consensus 8 ~I~l~G~-~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 8 TIFLTGY-MNSGKDAIARALQVTLN 31 (183)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH
T ss_conf 9998899-99999999999999986
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.73 E-value=0.29 Score=22.89 Aligned_cols=35 Identities=9% Similarity=0.080 Sum_probs=28.6
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEC
Q ss_conf 93799808999818999999999951399978998534883
Q 003472 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 38 ~~~~i~~t~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
|.+.|.|+ +|+|||+++..|.+.|. .++.++..+.
T Consensus 2 kiI~i~G~-~GsGKsT~~~~L~~~l~-----~~~~~~~~~~ 36 (190)
T d1khta_ 2 KVVVVTGV-PGVGSTTSSQLAMDNLR-----KEGVNYKMVS 36 (190)
T ss_dssp CEEEEECC-TTSCHHHHHHHHHHHHH-----TTTCCCEEEE
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCCEEEEE
T ss_conf 88999899-99898999999999998-----7699869995
|
| >d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: CTP synthase PyrG, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.41 E-value=0.44 Score=21.68 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=33.2
Q ss_pred CCCEEEEEC-CCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEC
Q ss_conf 889379980-8999818999999999951399978998534883
Q 003472 36 SHPTFQIWS-ANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~~-t~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
.+|-+||+| -=++.||-.+++.|.+.|+ ++|++|...|
T Consensus 2 ~tkyifvtGGV~S~lGKGi~~aSig~llk-----~~g~~V~~~K 40 (266)
T d1s1ma2 2 TTNYIFVTGGVVSSLGKGIAAASLAAILE-----ARGLNVTIMK 40 (266)
T ss_dssp CCEEEEEEECSSSCSCHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHH-----HCCCEEEEEE
T ss_conf 83299993872025531899999999999-----6796157884
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=88.73 E-value=0.49 Score=21.38 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=29.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECC
Q ss_conf 37998089998189999999999513999789985348830
Q 003472 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (817)
Q Consensus 39 ~~~i~~t~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (817)
.+.|.+..+|+|||++++-++..+. . ..|.+|.||-.
T Consensus 36 ~l~vi~G~~G~GKT~~~~~la~~~a---~-~~g~~v~~~s~ 72 (277)
T d1cr2a_ 36 EVIMVTSGSGMGKSTFVRQQALQWG---T-AMGKKVGLAML 72 (277)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH---H-TSCCCEEEEES
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHH---H-HCCCCEEEEEE
T ss_conf 0899994799979999999997265---5-33663457640
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=88.50 E-value=0.22 Score=23.61 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.9
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 89379980899981899999999995
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (817)
Q Consensus 37 ~~~~~i~~t~t~~GKT~vs~~L~~~l 62 (817)
++.|+|+|. +|+|||+++..|++.+
T Consensus 4 ~~~I~i~G~-pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 4 LPNILLTGT-PGVGKTTLGKELASKS 28 (173)
T ss_dssp CCCEEEECS-TTSSHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHH
T ss_conf 897989899-9999899999999997
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=86.58 E-value=0.25 Score=23.23 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 89379980899981899999999995
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (817)
Q Consensus 37 ~~~~~i~~t~t~~GKT~vs~~L~~~l 62 (817)
.|.|.|.|+ +|+||||++-.|+..+
T Consensus 7 ~K~I~i~G~-~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 7 AKTVAILGG-ESSGKSVLVNKLAAVF 31 (192)
T ss_dssp CEEEEEECC-TTSHHHHHHHHHHHHT
T ss_pred CEEEEEECC-CCCCHHHHHHHHHHHH
T ss_conf 328999899-9998999999999984
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| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=86.30 E-value=0.38 Score=22.11 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 889379980899981899999999995
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSF 62 (817)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~vs~~L~~~l 62 (817)
+.+.++|+|. +|+|||+++-.|++.|
T Consensus 2 ~~kiI~l~G~-~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 2 TTRMIILNGG-SSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCCEEEEECC-TTSSHHHHHHHHHHHS
T ss_pred CCEEEEEECC-CCCCHHHHHHHHHHHC
T ss_conf 9859999899-9999899999999972
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| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.22 E-value=0.41 Score=21.89 Aligned_cols=30 Identities=13% Similarity=0.116 Sum_probs=25.5
Q ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 8688889379980899981899999999995
Q 003472 32 DLPLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (817)
Q Consensus 32 ~~~~~~~~~~i~~t~t~~GKT~vs~~L~~~l 62 (817)
-.|...+.|+|.|. +|+|||+++..|++.+
T Consensus 3 ~~~~~~~iI~i~Gp-pGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 3 FSPDQVSVIFVLGG-PGAGKGTQCEKLVKDY 32 (196)
T ss_dssp SCTTTCEEEEEECS-TTSSHHHHHHHHHHHS
T ss_pred CCCCCCCEEEEECC-CCCCHHHHHHHHHHHH
T ss_conf 89999728999899-9999899999999985
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| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=84.92 E-value=0.68 Score=20.50 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=30.0
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEC
Q ss_conf 893799808999818999999999951399978998534883
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~~t~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
...++|+|. +|+|||.+..+++..+. ++++.+.|+.
T Consensus 36 ~n~l~l~G~-~G~GKTHLl~A~~~~~~-----~~~~~~~~~~ 71 (213)
T d1l8qa2 36 YNPIFIYGS-VGTGKTHLLQAAGNEAK-----KRGYRVIYSS 71 (213)
T ss_dssp CSSEEEECS-SSSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCCEEEECC-CCCCHHHHHHHHHHHHC-----CCCCCEEEEC
T ss_conf 885799888-99839999999998744-----6765048844
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| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.53 E-value=0.66 Score=20.61 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=27.7
Q ss_pred EEEEE--CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEC
Q ss_conf 37998--08999818999999999951399978998534883
Q 003472 39 TFQIW--SANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 39 ~~~i~--~t~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+.||+ |. -|+||||.+..|.+.|. .+|++|..++
T Consensus 3 G~lI~ieG~-dGsGKsT~~~~L~~~L~-----~~g~~v~~~~ 38 (209)
T d1nn5a_ 3 GALIVLEGV-DRAGKSTQSRKLVEALC-----AAGHRAELLR 38 (209)
T ss_dssp CCEEEEEES-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCCEEEEE
T ss_conf 059999899-88899999999999998-----7799689996
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| >d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: MurD-like peptide ligases, catalytic domain family: Folylpolyglutamate synthetase domain: Folylpolyglutamate synthetase species: Lactobacillus casei [TaxId: 1582]
Probab=82.80 E-value=0.89 Score=19.77 Aligned_cols=36 Identities=8% Similarity=0.080 Sum_probs=31.4
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEC
Q ss_conf 88893799808999818999999999951399978998534883
Q 003472 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 35 ~~~~~~~i~~t~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
.+++.|-|+||+ |||+++.-|.+.|. ..|++|+-|-
T Consensus 37 ~~lkvI~VTGTN---GKtST~~~i~~IL~-----~~G~kvG~~t 72 (296)
T d2gc6a2 37 QQGRYIHVTGTN---GKGSAANAIAHVLE-----ASGLTVGLYT 72 (296)
T ss_dssp GSSCEEEEECSS---SHHHHHHHHHHHHH-----HTTCCEEEEC
T ss_pred HHCCEEEEECCC---CHHHHHHHHHHHHH-----HCCCCEEEEE
T ss_conf 539879995657---68999999999998-----6597603551
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| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=81.81 E-value=0.86 Score=19.84 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 89379980899981899999999995
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (817)
Q Consensus 37 ~~~~~i~~t~t~~GKT~vs~~L~~~l 62 (817)
.+.|++.|. +|+|||+++-.|++.|
T Consensus 2 ~~~Iil~G~-~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 2 TEPIFMVGA-RGCGMTTVGRELARAL 26 (170)
T ss_dssp CCCEEEESC-TTSSHHHHHHHHHHHH
T ss_pred CCCEEEECC-CCCCHHHHHHHHHHHH
T ss_conf 998899889-9998899999999994
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| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=81.48 E-value=1.1 Score=19.20 Aligned_cols=26 Identities=19% Similarity=0.242 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 889379980899981899999999995
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSF 62 (817)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~vs~~L~~~l 62 (817)
.-+.+++.|. ||||||.++-.|++.+
T Consensus 48 ~ksNILliGP-TGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 48 TPKNILMIGP-TGVGKTEIARRLAKLA 73 (443)
T ss_dssp CCCCEEEECC-TTSSHHHHHHHHHHHT
T ss_pred CCCCEEEECC-CCCCHHHHHHHHHHHH
T ss_conf 6564799899-9988999999999873
|