Citrus Sinensis ID: 003496

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-----
Protein Sequence
MFLDIACFLKGEDKDYVTKIQDDPNFAHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGREIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEIPSSVEELDASMLESIYEHSSGIMDGILFFDFTNCLKLNEKEAHKKILADSQQRIQHMASASLRLCYEMVHYTPYGLCNCFPGSEIPDWFSNQCSGSSLTIQLPRRSCGRNLVGFALCAVIQFEEDIDASGKYCNVKCNYNFETKTRLEANNNVDDYYNLSLNGSMDSDHVLLGFEPCWNTEVPDDGNNQTTISFEFSVECKNEKCHQVKCCGVCPVYANPNDNKPNTLKLILGSEEECTKIRILHDKVGMSGSYDDEDEMEPSPKRICRDQINTHQQ
Secondary Structure (PSIPRED)
cEEEEEEEcccccHHHHHHHHcccccccccHHHHcccccEEEccccEEEccHHHHHHHHHHHHHccccccccccccccHHHHHHHHccccccccEEEEEEEcccccEEEEcHHHHcccccccEEEEEcccccccccccccEEcccccccccccccEEEEcccccccccccccccccEEEEccccccccccccccccccccEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccccccccEEEcccccccccccEEEEEcccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEEccccccccccccccccccHHHHcccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccEEEcccccccEEccccccccccccccccccEEccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEcccccccccccccccccEEEEEcccccccccccEEEEEEEEEEcccccccccEEEEEEEEEEcccccccccccccccccccccccccccEEEEEEEccccccccccccccEEEEEEEEEEEcccccEEEEEEEEEEEEcccccccccccccccccccccccEEEEEEccccccccccccccccccHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHcEEEEEcccccEEHHHHHHHHHHHHHHHcccccccccEEcccHHHHHHHHHccccccEEEEEEEEccccccccccHHHHHHccccEEEEEEccccccccccccEEEcccccccccHHcEEEEccccccccccccccHHHEEEEcccccHHHHHccccccHHcccEEEccccccccccccccccccHHEEEcccccccccccccHHHHHHccEEEccccccHccccccccHHHHHHEcccccccHHcccHHcccccEEEcccccHEccccHHHHcccccEEEcccccccccccccHcccccccEEEccccccHHcccHHHccHHHHHEEEccccccccccccHHHHHHccEEEccccccHccccccccccccccEEEccccccccccccHHcHHcccEEEccccccccccccccccccccEEEccccccEcccccHcccccccEEEccccccccccccHHHHHHccEEcccccccHcccccccccccEEEccccccHcccccccHHHHHHHHccccccccccccccccccEEEccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEcccccccHHHcccccccEEEEEccccccccccccEEEEEEEEcccccccccccEEEEEEEEEcccccccccccccccccccccccccccEEEEEEccccccccHHccccccEEEEEEEEEccccccEEEEEcEEEEEEEcccccccccccccccccccccccEEEEccccccccccccccccccccHHHHHHHccccc
Coil and Loop (DISEMBL)
MFLDIACflkgedkdyvtkiqddpnfaHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGREIVrqesvkepgkrsrlwhYEDVYHVLKKNKGTDAIEGILLNLsktrdihldgnVFVNMSNLRFlkfympeykgvpimsskvhldqglrylpeELRYLHWHQYSlktlplnfdpenlielnlpysnveQIWEGKKQAFKLKFIDLHHSqyltkipdlvetpnlerinllnctnlpyisssiqnfnnlsVLSLAgcrslvsfprniyfrspiavdfsdcvnltefplvsgnIIELRLWNtrieevpssiecltnletldlSFCKRLKRVSTSIcklkslcwlelggcsnleTFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLrkldlgdcselasLPEKLENLKSLKYLNAEFsaigqlpssisdlnqlkklkfsgcrglvlppllsglssltelhltdcniteipadigsLSSIVWLALsgnhferlptsvkQLSQLRYLHLSNcnmlqslpelpIYLVYLEAknckrlqtlpeipssVEELDASMLESIYEhssgimdgilffDFTNCLKLNEKEAHKKILADSQQRIQHMASASLRLCYEMvhytpyglcncfpgseipdwfsnqcsgssltiqlprrscgrnlVGFALCAVIQFEedidasgkycnvkcNYNFETKtrleannnvddyynlslngsmdsdhvllgfepcwntevpddgnnqttiSFEFSVEcknekchqvkccgvcpvyanpndnkpntLKLILGSEEECTKIRILhdkvgmsgsyddedemepspkricRDQINTHQQ
Flexible Loop (DISEMBL)
MFLDIACFLKGEDKDYVTKIQDDPNFAHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGreivrqesvkepgkrsrlwhYEDVYHVlkknkgtdaIEGILLNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVStsicklkslcwlelggcSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEIPSSVEELDASMLESIYEHSSGIMDGILFFDFTNCLKLNEKEAHKKILADSQQRIQHMASASLRLCYEMVHYTPYGLCNCFPGSEIPDWFSNQCSGSSLTIQLPRRSCGRNLVGFALCAVIQFEEDIDASGKYCNVKCNYNFEtktrleannNVDDYYNLSLNGSMDSDHVLLGFEPCWNTEVPDDGNNQTTISFEFSVECKNEKCHQVKCCGVCPvyanpndnkPNTLKLILGSEEECTKIRIlhdkvgmsgsyddedemepspkricrdqinthqq
Low Complexity Region (SEG)
MFLDIACFLKGEDKDYVTKIQDDPNFAHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGREIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRglvlppllsglssltelhltDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEIPSSVEELDASMLESIYEHSSGIMDGILFFDFTNCLKLNEKEAHKKILADSQQRIQHMASASLRLCYEMVHYTPYGLCNCFPGSEIPDWFSNQCSGSSLTIQLPRRSCGRNLVGFALCAVIQFEEDIDASGKYCNVKCNYNFETKTRLEANNNVDDYYNLSLNGSMDSDHVLLGFEPCWNTEVPDDGNNQTTISFEFSVECKNEKCHQVKCCGVCPVYANPNDNKPNTLKLILGSEEECTKIRILHDKVGMSGSYDDEDEMEPSPKRICRDQINTHQQ
Disordered region (IsUnstruct)
*FLDIACFLKGEDKDYVTKIQDDPNFAHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGREIV***********SRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEIP**VEELDASMLESIYEHSSGIMDGILFFDFTNCLKLNEKEAHKKILADSQQRIQHMASASLRLCYEMVHYTPYGLCNCFPGSEIPDWFSNQCSGSSLTIQLPRRSCGRNLVGFALCAVIQFEEDIDASGKYCNVKCNYNFETKTRLEANNNVDDYYNLSLNGSMDSDHVLLGFEPCWNTEVPDDGNNQTTISFEFSVECKNEKCHQVKCCGVCPVYANPNDNKPNTLKLILGSEEECTKIRILHDK******************************
Disordered Region (DISOPRED)
MFLDIACFLKGEDKDYVTKIQDDPNFAHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGREIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEIPSSVEELDASMLESIYEHSSGIMDGILFFDFTNCLKLNEKEAHKKILADSQQRIQHMASASLRLCYEMVHYTPYGLCNCFPGSEIPDWFSNQCSGSSLTIQLPRRSCGRNLVGFALCAVIQFEEDIDASGKYCNVKCNYNFETKTRLEANNNVDDYYNLSLNGSMDSDHVLLGFEPCWNTEVPDDGNNQTTISFEFSVECKNEKCHQVKCCGVCPVYA***********************************************************
Disordered Region (DISEMBL)
MFLDIACFLKGEDKDYVTKIQDDPNFAHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGREIVR*********RSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEIPSSVEELDASMLESIYEHSSGIMDGILFFDFTNCLKLNEKEAHKKILADSQQRIQHMASASLRLCYEMVHYTPYGLCNCFPGSEIPDWFSNQCSGSSLTIQLPRRSCGRNLVGFALCAVIQFEEDIDASGKYCNVKCNYNFETKTRLEANNNVDDYYNLSLNGSMDSDHVLLGFEPCWNTEVPDDGNNQTTISFEFSVECKNEKCHQVKCCGVCPVYANPNDNKPNTLKLILGSEEECTKIRILHDKVGMSG***********PKRICRDQINTHQQ
Disordered Region (DISPRO)
MFLDIACFLKGEDKDYVTKIQDDPNFAHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGREIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEIPSSVEELDASMLESIYEHSSGIMDGILFFDFTNCLKLNEKEAHKKILADSQQRIQHMASASLRLCYEMVHYTPYGLCNCFPGSEIPDWFSNQCSGSSLTIQLPRRSCGRNLVGFALCAVIQFEEDIDASGKYCNVKCNYNFETKTRLEANNNVDDYYNLSLNGSMDSDHVLLGFEPCWNTEVPDDGNNQTTISFEFSVECKNEKCHQVKCCGVCPVYANP*********************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFLDIACFLKGEDKDYVTKIQDDPNFAHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGREIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEIPSSVEELDASMLESIYEHSSGIMDGILFFDFTNCLKLNEKEAHKKILADSQQRIQHMASASLRLCYEMVHYTPYGLCNCFPGSEIPDWFSNQCSGSSLTIQLPRRSCGRNLVGFALCAVIQFEEDIDASGKYCNVKCNYNFETKTRLEANNNVDDYYNLSLNGSMDSDHVLLGFEPCWNTEVPDDGNNQTTISFEFSVECKNEKCHQVKCCGVCPVYANPNDNKPNTLKLILGSEEECTKIRILHDKVGMSGSYDDEDEMEPSPKRICRDQINTHQQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	815	2.2.26 [Sep-21-2011]
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.468	0.201	0.452	3e-76
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.626	0.392	0.318	2e-62
Q40392	1144	TMV resistance protein N	N/A	no	0.592	0.422	0.348	4e-61
O82500	1095	Putative disease resistan	no	no	0.467	0.347	0.329	1e-52
Q9FH83	1288	Probable WRKY transcripti	no	no	0.503	0.318	0.351	9e-52
Q9FL92	1372	Probable WRKY transcripti	no	no	0.477	0.283	0.345	5e-50
Q9FKN7	1613	Protein DA1-related 4 OS=	no	no	0.467	0.236	0.298	8e-35
Q9RBS2	1024	Protein PopC OS=Ralstonia	yes	no	0.375	0.298	0.290	3e-19
P0CB16	1201	Putative disease resistan	no	no	0.338	0.229	0.292	2e-17
Q9BTT6	524	Leucine-rich repeat-conta	yes	no	0.273	0.425	0.330	4e-16

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score =  287 bits (734), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 179/396 (45%), Positives = 228/396 (57%), Gaps = 14/396 (3%)

Query: 1    MFLDIACFLKGEDKDYVTKIQDDPNF-AHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGR 59
            +FLDIACF    DKD V  + D   F AH     LVDKSL+TIS +N V M   +Q  GR
Sbjct: 1058 IFLDIACFFNRIDKDNVAMLLDGCGFSAHVGFRGLVDKSLLTISQHNLVDMLSFIQATGR 1117

Query: 60   EIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMS 119
            EIVRQES   PG RSRLW+ + + HV   + GT AIEGI L++   +    + NVF  M 
Sbjct: 1118 EIVRQESADRPGDRSRLWNADYIRHVFINDTGTSAIEGIFLDMLNLK-FDANPNVFEKMC 1176

Query: 120  NLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIEL 179
            NLR LK Y  + +        V   QGL YLP +LR LHW  Y L +LP +F+PENL+EL
Sbjct: 1177 NLRLLKLYCSKAE----EKHGVSFPQGLEYLPSKLRLLHWEYYPLSSLPKSFNPENLVEL 1232

Query: 180  NLPYSNVEQIWEGKKQAF--------KLKFIDLHHSQYLTKIPDLVETPNLERINLLNCT 231
            NLP S  +++W+GKK  F        KLK + L +S  LTKIP L    NLE I+L  C 
Sbjct: 1233 NLPSSCAKKLWKGKKARFCTTNSSLEKLKKMRLSYSDQLTKIPRLSSATNLEHIDLEGCN 1292

Query: 232  NLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNII 291
            +L  +S SI     L  L+L GC  L + P  +   S   ++ S C  L  FP +S N+ 
Sbjct: 1293 SLLSLSQSISYLKKLVFLNLKGCSKLENIPSMVDLESLEVLNLSGCSKLGNFPEISPNVK 1352

Query: 292  ELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETF 351
            EL +  T I+E+PSSI+ L  LE LDL   + LK + TSI KLK L  L L GC +LE F
Sbjct: 1353 ELYMGGTMIQEIPSSIKNLVLLEKLDLENSRHLKNLPTSIYKLKHLETLNLSGCISLERF 1412

Query: 352  PEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKL 387
            P+   +M+ L  +DL  T I+ LPSSI YL  L +L
Sbjct: 1413 PDSSRRMKCLRFLDLSRTDIKELPSSISYLTALDEL 1448

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.
Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  241 bits (614), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 188/591 (31%), Positives = 287/591 (48%), Gaps = 80/591 (13%)

Query: 1   MFLDIACFLKGEDKDYVTKIQDDPNFAHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGRE 60
           MFL IAC   G +  YV  +  D    +   ++L +KSL+ I+ +  ++MH+LL+K+GRE
Sbjct: 429 MFLYIACLFNGFEVSYVKDLLKD----NVGFTMLTEKSLIRITPDGYIEMHNLLEKLGRE 484

Query: 61  IVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSK---TRDIHLDGNVFVN 117
           I R +S   PGKR  L ++ED++ V+ +  GT+ + GI L   +   TR + +D   F  
Sbjct: 485 IDRAKSKGNPGKRRFLTNFEDIHEVVTEKTGTETLLGIRLPFEEYFSTRPLLIDKESFKG 544

Query: 118 MSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLI 177
           M NL++L+     Y G         L Q L YLP +LR L W    LK+LP  F  E L+
Sbjct: 545 MRNLQYLEI---GYYG--------DLPQSLVYLPLKLRLLDWDDCPLKSLPSTFKAEYLV 593

Query: 178 ELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYIS 237
            L + YS +E++WEG      LK ++L +S  L +IPDL    NLE ++L+ C +L  + 
Sbjct: 594 NLIMKYSKLEKLWEGTLPLGSLKEMNLRYSNNLKEIPDLSLAINLEELDLVGCKSLVTLP 653

Query: 238 SSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGN-------- 289
           SSIQN   L  L ++ C+ L SFP ++   S   ++ + C NL  FP +           
Sbjct: 654 SSIQNATKLIYLDMSDCKKLESFPTDLNLESLEYLNLTGCPNLRNFPAIKMGCSDVDFPE 713

Query: 290 -----IIELRLWNTRI---------------------------------EEVPSSIECLT 311
                ++E   WN  +                                 E++   I+ L 
Sbjct: 714 GRNEIVVEDCFWNKNLPAGLDYLDCLTRCMPCEFRPEQLAFLNVRGYKHEKLWEGIQSLG 773

Query: 312 NLETLDLSFCKRLKRVS--TSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRE- 368
           +LE +DLS  + L  +   +   KL+SL    L  C +L T P  +  +  L+ ++++E 
Sbjct: 774 SLEGMDLSESENLTEIPDLSKATKLESLI---LNNCKSLVTLPSTIGNLHRLVRLEMKEC 830

Query: 369 TAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDL 428
           T +  LP+ +  L  L  LDL  CS L S P    N   + +L  E +AI ++PS+I +L
Sbjct: 831 TGLEVLPTDVN-LSSLETLDLSGCSSLRSFPLISTN---IVWLYLENTAIEEIPSTIGNL 886

Query: 429 NQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFE 488
           ++L +L+   C GL + P    LSSL  L L+ C+       I    SI WL L     E
Sbjct: 887 HRLVRLEMKKCTGLEVLPTDVNLSSLETLDLSGCSSLRSFPLIS--ESIKWLYLENTAIE 944

Query: 489 RLPTSVKQLSQLRYLHLSNCNMLQSLPELP---IYLVYLEAKNCKRLQTLP 536
            +P  + + + L+ L L+NC  L +LP        LV  E K C  L+ LP
Sbjct: 945 EIP-DLSKATNLKNLKLNNCKSLVTLPTTIGNLQKLVSFEMKECTGLEVLP 994

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  236 bits (603), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 179/514 (34%), Positives = 265/514 (51%), Gaps = 31/514 (6%)

Query: 1   MFLDIACFLKGEDKDYVTKIQDDPNF-AHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGR 59
           MFLDIACFL+GE+KDY+ +I +  +  A Y L +L+DKSLV IS  N+VQMHDL+Q MG+
Sbjct: 437 MFLDIACFLRGEEKDYILQILESCHIGAEYGLRILIDKSLVFISEYNQVQMHDLIQDMGK 496

Query: 60  EIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMS 119
            IV  +  K+PG+RSRLW  ++V  V+  N GT A+E I ++ S +  +        NM 
Sbjct: 497 YIVNFQ--KDPGERSRLWLAKEVEEVMSNNTGTMAMEAIWVS-SYSSTLRFSNQAVKNMK 553

Query: 120 NLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIEL 179
            LR             +  S  H    + YLP  LR      Y  ++ P  F+ + L+ L
Sbjct: 554 RLRVFN----------MGRSSTHY--AIDYLPNNLRCFVCTNYPWESFPSTFELKMLVHL 601

Query: 180 NLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSS 239
            L ++++  +W   K    L+ IDL  S+ LT+ PD    PNLE +NL  C+NL  +  S
Sbjct: 602 QLRHNSLRHLWTETKHLPSLRRIDLSWSKRLTRTPDFTGMPNLEYVNLYQCSNLEEVHHS 661

Query: 240 IQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNI---IELRLW 296
           +   + +  L L  C+SL  FP  +   S   +    C +L + P + G +   I++ + 
Sbjct: 662 LGCCSKVIGLYLNDCKSLKRFP-CVNVESLEYLGLRSCDSLEKLPEIYGRMKPEIQIHMQ 720

Query: 297 NTRIEEVPSSI-ECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEIL 355
            + I E+PSSI +  T++  L L   K L  + +SIC+LKSL  L + GCS LE+ PE +
Sbjct: 721 GSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLESLPEEI 780

Query: 356 EKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELA--SLPEKLENLKSLKYLNA 413
             +++L   D  +T I   PSSI  L  L  L      +      P   E L SL+YLN 
Sbjct: 781 GDLDNLRVFDASDTLILRPPSSIIRLNKLIILMFRGFKDGVHFEFPPVAEGLHSLEYLNL 840

Query: 414 EFSAI--GQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDC----NITEI 467
            +  +  G LP  I  L+ LKKL  S      LP  ++ L +L  L L DC     + E+
Sbjct: 841 SYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQLPEL 900

Query: 468 PADIGSLSSIVWLALSGNHFERLPTSVKQLSQLR 501
           P ++  L     +AL   H+  L T  K+L +++
Sbjct: 901 PPELNELHVDCHMALKFIHY--LVTKRKKLHRVK 932

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  209 bits (531), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 139/422 (32%), Positives = 229/422 (54%), Gaps = 41/422 (9%)

Query: 1   MFLDIACFLKGEDKDYVTK--IQDDPNFAHYCLSVLVDKSLVTISCNNKVQMHDLLQKMG 58
           +FL IAC   G+ ++Y+ +  I ++  +  + L VL DKSL+    N +++MH LL+++G
Sbjct: 433 LFLHIACIFSGQHENYLKQMIIANNDTYVSFGLQVLADKSLIQKFENGRIEMHSLLRQLG 492

Query: 59  REIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRD-IHLDGNVFVN 117
           +E+VR++S+ EPGKR  L + ++   VL  N GT  + GI L++ + ++ +++    F  
Sbjct: 493 KEVVRKQSIYEPGKRQFLMNAKETCGVLSNNTGTGTVLGISLDMCEIKEELYISEKTFEE 552

Query: 118 MSNLRFLKFYMPEYKGVPI---MSSKVHL-DQGLRYLPEELRYLHWHQYSLKTLPLNFDP 173
           M NL +LKFYM      PI   M  K+ L ++GL YLP+ LR LHW  Y L+  P +F P
Sbjct: 553 MRNLVYLKFYMSS----PIDDKMKVKLQLPEEGLSYLPQ-LRLLHWDAYPLEFFPSSFRP 607

Query: 174 ENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNL 233
           E L+ELN+ +S ++++W G +    L+ ++L+ S+ L  +P+L+E   L R++L  C +L
Sbjct: 608 ECLVELNMSHSKLKKLWSGVQPLRNLRTMNLNSSRNLEILPNLMEATKLNRLDLGWCESL 667

Query: 234 PYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIEL 293
             + SSI+N  +L +L ++ C+ L   P NI   S   + F  C  L  FP +S NI  L
Sbjct: 668 VELPSSIKNLQHLILLEMSCCKKLEIIPTNINLPSLEVLHFRYCTRLQTFPEISTNIRLL 727

Query: 294 RLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPE 353
            L  T I EVP S++  + ++                IC       +E      L   P 
Sbjct: 728 NLIGTAITEVPPSVKYWSKID---------------EIC-------MERAKVKRLVHVPY 765

Query: 354 ILEKMEHLLEIDLRETA-IRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLN 412
           +LEK+       LRE   +  +P  ++YL  L+ +D+  C  + SLP+   ++ +L  +N
Sbjct: 766 VLEKL------CLRENKELETIPRYLKYLPRLQMIDISYCINIISLPKLPGSVSALTAVN 819

Query: 413 AE 414
            E
Sbjct: 820 CE 821

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score =  206 bits (523), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 170/483 (35%), Positives = 247/483 (51%), Gaps = 73/483 (15%)

Query: 1   MFLDIACFLKGEDKDYVTKIQDDPNF-AHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGR 59
           +FLDIACF +GE+ +YV ++ +   F  H  + VLVDK LVTIS  N+V +H L Q +GR
Sbjct: 393 IFLDIACFFQGENVNYVIQLLEGCGFFPHVEIDVLVDKCLVTIS-ENRVWLHKLTQDIGR 451

Query: 60  EIVRQESVKEPGKRSRLWHYEDVYHVL---------------KKNKGTDAIEGILLNLSK 104
           EI+  E+V +  +R RLW    + ++L               K+ +G++ IEG+ L+ S 
Sbjct: 452 EIINGETV-QIERRRRLWEPWSIKYLLEYNEHKANGEPKTTFKRAQGSEEIEGLFLDTSN 510

Query: 105 TRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSL 164
            R   L  + F NM NLR LK Y    +  P+++        L  LP ELR LHW  Y L
Sbjct: 511 LR-FDLQPSAFKNMLNLRLLKIYCSNPEVHPVINFPTG---SLHSLPNELRLLHWENYPL 566

Query: 165 KTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLER 224
           K+LP NFDP +L+E+N+PYS ++++W G K    L+ I L HS +L  I DL++  NLE 
Sbjct: 567 KSLPQNFDPRHLVEINMPYSQLQKLWGGTKNLEMLRTIRLCHSHHLVDIDDLLKAENLEV 626

Query: 225 INLLNCTNLPYISSSIQNFNNLSVLSLAGC---RSLVSFPRNI---------YFRSPIAV 272
           I+L  CT L    ++      L V++L+GC   +S++  P NI             P++ 
Sbjct: 627 IDLQGCTRLQNFPAA-GRLLRLRVVNLSGCIKIKSVLEIPPNIEKLHLQGTGILALPVST 685

Query: 273 ---DFSDCVN-LTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVS 328
              +  + VN LTE P +S  +  L    T + E  SS + L  L  L+L  C  L+ + 
Sbjct: 686 VKPNHRELVNFLTEIPGLSEELERL----TSLLESNSSCQDLGKLICLELKDCSCLQSLP 741

Query: 329 TSICKLKSLCWLELGGCSNL---ETFPEILEKMEHLLEIDLRETAIR---NLPSSIEY-- 380
            ++  L  L  L+L GCS+L   + FP  L+++       L  TAIR    LP S+E   
Sbjct: 742 -NMANL-DLNVLDLSGCSSLNSIQGFPRFLKQLY------LGGTAIREVPQLPQSLEILN 793

Query: 381 --------------LEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSIS 426
                         LE L+ LDL  CSEL ++     NLK L +       + QLP S+ 
Sbjct: 794 AHGSCLRSLPNMANLEFLKVLDLSGCSELETIQGFPRNLKELYFAGTTLREVPQLPLSLE 853

Query: 427 DLN 429
            LN
Sbjct: 854 VLN 856

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score =  200 bits (508), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 155/449 (34%), Positives = 220/449 (48%), Gaps = 60/449 (13%)

Query: 1   MFLDIACFLKGEDKDYVTKIQDDPNF-AHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGR 59
           +FLDIACF +GE+ DYV ++ +   F  H  + VLV+KSLVTIS  N+V+MH+L+Q +GR
Sbjct: 386 IFLDIACFFQGENVDYVMQLLEGCGFFPHVGIDVLVEKSLVTIS-ENRVRMHNLIQDVGR 444

Query: 60  EIVRQESVKEPGKRSRLWH---------------YEDVYHVLKKNKGTDAIEGILLNLSK 104
           +I+ +E+ ++  +RSRLW                 E+     ++ +  + IEG+ L+ S 
Sbjct: 445 QIINRET-RQTKRRSRLWEPCSIKYLLEDKEQNENEEQKTTFERAQVPEEIEGMFLDTSN 503

Query: 105 TRDIHLDGNVFVNMSNLRFLKFYM--PEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQY 162
                +    F NM NLR  K Y   PE   V        L   L  LP  LR LHW  Y
Sbjct: 504 L-SFDIKHVAFDNMLNLRLFKIYSSNPEVHHV-----NNFLKGSLSSLPNVLRLLHWENY 557

Query: 163 SLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNL 222
            L+ LP NFDP +L+E+N+PYS ++++W G K    LK I L HSQ L  I DL++  NL
Sbjct: 558 PLQFLPQNFDPIHLVEINMPYSQLKKLWGGTKDLEMLKTIRLCHSQQLVDIDDLLKAQNL 617

Query: 223 ERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTE 282
           E ++L  CT L    ++ Q  + L V++L+GC  + SFP        I         + E
Sbjct: 618 EVVDLQGCTRLQSFPATGQLLH-LRVVNLSGCTEIKSFPE---IPPNIETLNLQGTGIIE 673

Query: 283 FPL--VSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWL 340
            PL  V  N  EL      + E+P  +  ++NLE  DL     L ++STS      L  L
Sbjct: 674 LPLSIVKPNYRELL---NLLAEIPG-LSGVSNLEQSDLKPLTSLMKISTSYQNPGKLSCL 729

Query: 341 ELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPE 400
           EL  CS L + P ++                         LE L+ LDL  CSEL ++  
Sbjct: 730 ELNDCSRLRSLPNMVN------------------------LELLKALDLSGCSELETIQG 765

Query: 401 KLENLKSLKYLNAEFSAIGQLPSSISDLN 429
              NLK L  +      + QLP S+   N
Sbjct: 766 FPRNLKELYLVGTAVRQVPQLPQSLEFFN 794

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2

 Score =  149 bits (376), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 141/473 (29%), Positives = 212/473 (44%), Gaps = 92/473 (19%)

Query: 1   MFLDIACFLKGEDKDYVTKIQDDPN-FAHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGR 59
           + LDIA F KGE  +YV ++ ++ + F    + VLVDK ++TIS  N VQM++L+Q   +
Sbjct: 414 IVLDIAFFFKGETVNYVMQLLEESHYFPRLAIDVLVDKCVLTIS-ENTVQMNNLIQDTCQ 472

Query: 60  EIVRQE-----SVKEPGKRSRLWHYEDV------YHVLKKNKGTDAIEGILLNLSKTR-D 107
           EI   E      + EP +   L  Y+++        + K     + IE I L+ S  + D
Sbjct: 473 EIFNGEIETCTRMWEPSRIRYLLEYDELEGSGETKAMPKSGLVAEHIESIFLDTSNVKFD 532

Query: 108 IHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTL 167
           +  D   F NM NL+FLK Y    K +    S ++  +GL  LP ELR LHW  Y L++L
Sbjct: 533 VKHDA--FKNMFNLKFLKIYNSCSKYI----SGLNFPKGLDSLPYELRLLHWENYPLQSL 586

Query: 168 PLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINL 227
           P +FD  +L++L++PYS + ++    K    LK + L HS  L +   L+   N+E I+L
Sbjct: 587 PQDFDFGHLVKLSMPYSQLHKLGTRVKDLVMLKRLILSHSLQLVECDILIYAQNIELIDL 646

Query: 228 LNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVS 287
             CT L     + Q   NL V++L+GC  +  F                         V 
Sbjct: 647 QGCTGLQRFPDTSQ-LQNLRVVNLSGCTEIKCFSG-----------------------VP 682

Query: 288 GNIIELRLWNTRIEEVP------------------SSIECLTNLETLDLSFCKRLKRVST 329
            NI EL L  TRI E+P                  + +E  +++E +DL     L  V++
Sbjct: 683 PNIEELHLQGTRIREIPIFNATHPPKVKLDRKKLWNLLENFSDVEHIDLECVTNLATVTS 742

Query: 330 SICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDL 389
           +   +  L  L +  CSNL   P+++                         LE L+ L L
Sbjct: 743 NNHVMGKLVCLNMKYCSNLRGLPDMVS------------------------LESLKVLYL 778

Query: 390 GDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGL 442
             CSEL  +     NLK L         + QLP+S+  LN        GC+ L
Sbjct: 779 SGCSELEKIMGFPRNLKKLYVGGTAIRELPQLPNSLEFLNA------HGCKHL 825

Arabidopsis thaliana (taxid: 3702)

>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 162/341 (47%), Gaps = 35/341 (10%)

Query: 212 KIPDLV-ETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPI 270
           ++PD+  E  +L+ +  ++C +L  + ++++N   L  LSL G ++  + P  ++ R P 
Sbjct: 215 ELPDVTFEIAHLKNLETVDC-DLHALPATLENLFLLETLSLKGAKNFKALPDAVW-RLPA 272

Query: 271 AVDFS-DCVNLTEFPLVSGN--IIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRV 327
             +       L   P V G   +  L + ++ +E++P+    L  L +L LS  K L+++
Sbjct: 273 LQELKLSETGLKSLPPVGGGSALQRLTIEDSPLEQLPAGFADLDQLASLSLSNTK-LEKL 331

Query: 328 STSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKL 387
           S+ I +L +L  L L     LE  P+ L ++E L  I  R   I  LPS+   +  L+KL
Sbjct: 332 SSGIGQLPALKSLSLQDNPKLERLPKSLGQVEELTLIGGR---IHALPSA-SGMSSLQKL 387

Query: 388 ------------DLGDCSELA----------SLPEKLENLKSLKYLNAEFSA-IGQLPSS 424
                       D G    LA           LP  + NL +LK L+ + +  +G LP+S
Sbjct: 388 TVDNSSLAKLPADFGALGNLAHVSLSNTKLRDLPASIGNLFTLKTLSLQDNPKLGSLPAS 447

Query: 425 ISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSG 484
              L+ L++L  +G R   LP +  G SSL  L + D  +  +PAD G+L ++  L+LS 
Sbjct: 448 FGQLSGLQELTLNGNRIHELPSM-GGASSLQTLTVDDTALAGLPADFGALRNLAHLSLSN 506

Query: 485 NHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLE 525
                LP +   L  L+ L L     L +LP    YL  LE
Sbjct: 507 TQLRELPANTGNLHALKTLSLQGNQQLATLPSSLGYLSGLE 547

Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|P0CB16|DRL25_ARATH Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=2

 Score = 91.7 bits (226), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 144/291 (49%), Gaps = 15/291 (5%)

Query: 215 DLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDF 274
           D    P L R+ L NCT L  +   ++   NL +L   G   LV     +       +  
Sbjct: 626 DFSTMPILTRLLLRNCTRLKRLPQ-LRPLTNLQILDACGATDLVEM-LEVCLEEKKELRI 683

Query: 275 SDCVNLTEFPLVSGNIIELRLWN-------TRIEEVPSSIECLTNLETLDLSFCKRLKRV 327
            D ++ T  P ++  I ++   N       + IEE+PS IE LT+LE  D+S C +LK +
Sbjct: 684 LD-MSKTSLPELADTIADVVNLNKLLLRNCSLIEELPS-IEKLTHLEVFDVSGCIKLKNI 741

Query: 328 STSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRE-TAIRNLPSSIEYLEGLRK 386
           + S  ++  L  + L   +NL   P+ + ++ +L E+ +R+ + ++ LP+ +E L  L  
Sbjct: 742 NGSFGEMSYLHEVNLSE-TNLSELPDKISELSNLKELIIRKCSKLKTLPN-LEKLTNLEI 799

Query: 387 LDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPP 446
            D+  C+EL ++    ENL  L  +N   + +G+LP+ IS+L+ LK+L    C  L   P
Sbjct: 800 FDVSGCTELETIEGSFENLSCLHKVNLSETNLGELPNKISELSNLKELILRNCSKLKALP 859

Query: 447 LLSGLSSLTELHLTDC-NITEIPADIGSLSSIVWLALSGNHFERLPTSVKQ 496
            L  L+ L    ++ C N+ +I     S+S +  + LSG + +  P   KQ
Sbjct: 860 NLEKLTHLVIFDVSGCTNLDKIEESFESMSYLCEVNLSGTNLKTFPELPKQ 910

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9BTT6|LRRC1_HUMAN Leucine-rich repeat-containing protein 1 OS=Homo sapiens GN=LRRC1 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 4/227 (1%)

Query: 290 IIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLE 349
           ++EL +    I E+P SI     L+  D S    L R+  S  +L++L  L +   S L+
Sbjct: 84  LVELDVSRNEIPEIPESISFCKALQVADFS-GNPLTRLPESFPELQNLTCLSVNDIS-LQ 141

Query: 350 TFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLK 409
           + PE +  + +L  ++LRE  +  LP S+  L  L +LDLG+ +E+ +LPE +  L  LK
Sbjct: 142 SLPENIGNLYNLASLELRENLLTYLPDSLTQLRRLEELDLGN-NEIYNLPESIGALLHLK 200

Query: 410 YLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPA 469
            L  + + + +LP  I +L  L  L  S  R   LP  +SGL+SLT+L ++   +  IP 
Sbjct: 201 DLWLDGNQLSELPQEIGNLKNLLCLDVSENRLERLPEEISGLTSLTDLVISQNLLETIPD 260

Query: 470 DIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPE 516
            IG L  +  L +  N   +LP +V +   L  L L+  N L +LP+
Sbjct: 261 GIGKLKKLSILKVDQNRLTQLPEAVGECESLTELVLTE-NQLLTLPK 306

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	815
359486071	1261	PREDICTED: TMV resistance protein N-like	0.880	0.569	0.381	1e-121
359486073	1296	PREDICTED: TMV resistance protein N-like	0.872	0.548	0.381	1e-121
359486075	1291	PREDICTED: TMV resistance protein N-like	0.907	0.573	0.367	1e-120
147770134	1414	hypothetical protein VITISV_040107 [Viti	0.907	0.523	0.364	1e-118
359487015	1610	PREDICTED: TMV resistance protein N-like	0.923	0.467	0.367	1e-117
224145016	1254	tir-nbs-lrr resistance protein [Populus	0.844	0.548	0.362	1e-115
255537139	1137	leucine-rich repeat-containing protein,	0.782	0.561	0.376	1e-114
451798990	1335	TMV resistance protein N-like protein 7	0.793	0.484	0.393	1e-114
451798988	1219	TMV resistance protein N-like protein 6	0.787	0.526	0.393	1e-113
255563202	1158	leucine-rich repeat containing protein,	0.705	0.496	0.393	1e-111

>gi|359486071|ref|XP_002272667.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 311/815 (38%), Positives = 428/815 (52%), Gaps = 97/815 (11%)

Query: 1    MFLDIACFLKGEDKDYVTKIQDDPNF-AHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGR 59
            +FLDIACF KG+DKDYV K+    +F     +  L+DKSLVTIS  NK+ MHDL+Q+MG 
Sbjct: 440  IFLDIACFFKGQDKDYVIKLLKSCDFFPEIEIRNLIDKSLVTIS-YNKLCMHDLIQEMGW 498

Query: 60   EIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMS 119
            EIVRQES+K+PGKRSRLW  +DV  +L  N GT+A+EG++LNLS  +++H   NVF  M+
Sbjct: 499  EIVRQESIKDPGKRSRLWVNDDVIDMLTTNTGTEAVEGMVLNLSTLKELHFSVNVFTKMN 558

Query: 120  NLRFLKFYMPEYKGV------------PIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTL 167
             LR L+FY  +  G             P    K HL    ++L   LR LHW  Y LK+L
Sbjct: 559  KLRVLRFYDAQIWGSSWIGRHNDRYKSPYTECKFHLSGDFKFLSNHLRSLHWDGYPLKSL 618

Query: 168  PLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINL 227
            P NF PE L+EL + +S +EQ+WEG K   KLKFI+L HSQ+L K PD    P L RI L
Sbjct: 619  PSNFHPEKLLELKMCFSQLEQLWEGNKSFQKLKFIELSHSQHLIKTPDFSGAPKLRRIIL 678

Query: 228  LNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVS 287
              CT+L  +  SI     L  L+L GC++L SF  +I+  S   +  S C  L +FP V 
Sbjct: 679  EGCTSLVKVHPSIGALKKLIFLNLEGCKNLKSFSSSIHLESLQTITLSGCSKLKKFPEVQ 738

Query: 288  G---NIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGG 344
            G   N+ EL L  T I+ +P SIE L  L  L+L  CK L+ +   I KLKSL  L L  
Sbjct: 739  GAMDNLPELSLKGTAIKGLPLSIEYLNGLSLLNLEECKSLESLPGCIFKLKSLKTLILSN 798

Query: 345  CSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEG--------------------- 383
            CS L+  PEI E ME L ++ L +T +R LPSSIE+L G                     
Sbjct: 799  CSRLKKLPEIQENMESLKKLFLDDTGLRELPSSIEHLNGLVLLKLKNCKKLASLPESICK 858

Query: 384  ---LRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCR 440
               L+ L L  CSEL  LP+ + +L+ L  L A  + I ++P+SI+ L +L+ L  +GC+
Sbjct: 859  LTSLQTLTLSGCSELKKLPDDMGSLQCLVKLKANGTGIQEVPTSITLLTKLEVLSLAGCK 918

Query: 441  G-------LVL-----------PPLLSGLSSLTELHLTDCNITE--IPADIGSLSSIVWL 480
            G       L L           P  L  L SL +L+L+ CN+ E  +P+D+ SLS +  L
Sbjct: 919  GGESKSRNLALCLRSSPTKGLRPSFLPVLYSLRKLNLSGCNLLEGALPSDLSSLSWLECL 978

Query: 481  ALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEIPS 540
             LS N F  +P ++ +L +L+ L L +C  L+SLPELP  +  L A +C  L+T    PS
Sbjct: 979  DLSRNSFITVP-NLSRLPRLKRLILEHCKSLRSLPELPSNIEKLLANDCTSLETFSN-PS 1036

Query: 541  SVEELDASMLESIYEHSSGIMDGILFFDFTNCLKLNEKEAHKKILADSQQRIQHMASASL 600
            S      S       H        L F F NC +L E E    + A   + I+ +AS S 
Sbjct: 1037 SAYAWRNS------RH--------LNFQFYNCFRLVENEQSDNVEA-ILRGIRLVASIS- 1080

Query: 601  RLCYEMVHYTPYGLCNCFPGSEIPDWFSNQCSGSSLTIQLPRRSCGRNLVGFALCAVIQF 660
               +   HY         PGS IP+WF++Q  G S+T++LP   C   L+G A+C V  F
Sbjct: 1081 --NFVAPHYELKWYDAVVPGSSIPEWFTDQSLGCSVTVELPPHWCTTRLMGLAVCFV--F 1136

Query: 661  EEDIDASGKYCNVKCNYNFETKTRLEANNNVDDYYNLSLNGSMDSDHVLLGFEPCWNTEV 720
              +I   GK+   +  ++         +N    +++        +DH+  G+ P +  EV
Sbjct: 1137 HPNI-GMGKFGRSE-YFSMNESGGFSLHNTASTHFS-------KADHIWFGYRPLYG-EV 1186

Query: 721  PDDGNNQTTISFEFSVECKNEKCHQVKCCGVCPVY 755
                 +   +SF  S    N     VK CG   V+
Sbjct: 1187 FSPSIDHLKVSFAGS----NRAGEVVKKCGARLVF 1217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486073|ref|XP_002272820.2| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera]

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 315/826 (38%), Positives = 430/826 (52%), Gaps = 115/826 (13%)

Query: 1    MFLDIACFLKGEDKDYVTKIQDDPNF-AHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGR 59
            +FLDIACF KG+DKDYV K+    +F     +  L+DKSLVTIS  NK+ MHDL+QKMG 
Sbjct: 445  IFLDIACFFKGQDKDYVIKLLKSCDFFPEIGIRNLIDKSLVTIS-YNKLCMHDLIQKMGW 503

Query: 60   EIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMS 119
            EIVRQES+K+PGKRSRLW  +DV  +L  N GT+A+EG++LNLS  +++H   NVF  M+
Sbjct: 504  EIVRQESIKDPGKRSRLWVNDDVIDMLTTNTGTEAVEGMVLNLSTLKELHFSVNVFTKMN 563

Query: 120  NLRFLKFYMPEYKGV------------PIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTL 167
             LR L+FY  +  G             P    K HL    ++L   LR L+W  Y LK+L
Sbjct: 564  KLRVLRFYDAQIWGSSWIWRRNDRYKSPYTECKFHLSGDFKFLSNHLRSLYWDGYPLKSL 623

Query: 168  PLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINL 227
            P NF PE L+EL + +S +EQ+WEG K   KLKFI+L HSQ+L K PD    P L RI L
Sbjct: 624  PSNFHPEKLLELKMCFSQLEQLWEGNKSFQKLKFIELSHSQHLIKTPDFSGAPKLRRIIL 683

Query: 228  LNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVS 287
              CT+L  +  SI     L  L+L GC++L SF  +I+  S   +  S C  L +FP V 
Sbjct: 684  EGCTSLVKVHPSIGALKKLIFLNLEGCKNLKSFLSSIHLESLQILTLSGCSKLKKFPEVQ 743

Query: 288  G---NIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGG 344
            G   N  EL L  T I+ +P SIE L  L  L+L  CK L+ + + I KLKSL  L L  
Sbjct: 744  GPMDNFSELSLKGTAIKGLPLSIEYLNGLALLNLEECKSLESLPSCIFKLKSLKTLILSN 803

Query: 345  CSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLEN 404
            CS L+  PEI E ME L E+ L +T +R LPSSIE+L GL  L L +C  LASLPE    
Sbjct: 804  CSRLKKLPEIGENMESLKELFLDDTGLRELPSSIEHLNGLVLLKLKNCKRLASLPESFCK 863

Query: 405  LKSLKYLN------------------------AEFSAIGQLPSSISDLNQLKKLKFSGCR 440
            L SL+ L                         A  S I ++P+SI+ L +L+ L  +GC+
Sbjct: 864  LTSLQTLTLSGCSELKKLPDDMGSLQCLLKLKANGSGIQEVPTSITLLTKLQVLSLAGCK 923

Query: 441  G-----------LVLPPL-------LSGLSSLTELHLTDCNITE--IPADIGSLSSIVWL 480
            G           L   P        L+ L SL +L+L+DCN+ E  +P+D+ SLS +  L
Sbjct: 924  GGGSKSKNLALSLRASPTDGLRLSSLTVLHSLKKLNLSDCNLLEGALPSDLSSLSWLECL 983

Query: 481  ALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEIPS 540
             LS N F  +P S+ +L +L  L L +C  L+SLPELP  +  L A +C  L+T+   PS
Sbjct: 984  DLSRNSFITVP-SLSRLPRLERLILEHCKSLRSLPELPSSVEELLANDCTSLETISN-PS 1041

Query: 541  SVEELDASMLESIYEHSSGIMDGILFFDFTNCLKLNEKEAHKKILADSQQRIQHMAS--- 597
            S      S              G L+ +F NC +L E E    + A   + I+ +AS   
Sbjct: 1042 SAYAWRNS--------------GHLYSEFCNCFRLVENEQSDNVEA-ILRGIRLVASIPN 1086

Query: 598  --------ASLRLCYEMVHYTPYGLCNCFPGSEIPDWFSNQCSGSSLTIQLPRRSCGRNL 649
                      L + Y+ V           PGS IP+WF++Q    S+T++LP   C   L
Sbjct: 1087 SVAPSDIQRDLSIVYDAV----------VPGSSIPEWFTHQSERCSVTVELPPHWCNTRL 1136

Query: 650  VGFALCAVIQFEEDIDASGKYCNVKCNYNFETKTRLEANNNVDDYYNLSLNGSMDSDHVL 709
            +G A+C V  F  +I   GK+      ++         +N V  +++        +DH+ 
Sbjct: 1137 MGLAVCVV--FHANI-GMGKFGR-SAYFSMNESGGFSLHNTVSMHFS-------KADHIW 1185

Query: 710  LGFEPCWNTEVPDDGNNQTTISFEFSVECKNEKCHQVKCCGVCPVY 755
             G+ P +  +V     +   +SF  S    N     VK CGV  V+
Sbjct: 1186 FGYRPLFG-DVFSSSIDHLKVSFAGS----NRAGEVVKKCGVRLVF 1226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486075|ref|XP_002273047.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 311/846 (36%), Positives = 427/846 (50%), Gaps = 106/846 (12%)

Query: 1    MFLDIACFLKGEDKDYVTKIQDDPNF-AHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGR 59
            +F DIACF KG+DKDYV K+    +F     +  L+DKSLVTIS  NK+ MHDL+Q+MG 
Sbjct: 440  IFFDIACFFKGQDKDYVIKLLKSCDFFPEIGIRNLIDKSLVTIS-YNKLCMHDLIQEMGW 498

Query: 60   EIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMS 119
            EIVRQES+K+PGKRSRLW  +DV  +L  N GT+A+EG++LNLS  +++H   NVF  M+
Sbjct: 499  EIVRQESMKDPGKRSRLWVNDDVIDMLTTNTGTEAVEGMVLNLSTLKELHFSVNVFTKMN 558

Query: 120  NLRFLKFYMPEYKGV------------PIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTL 167
             LR L+FY  +  G             P    K HL    ++L   LR L+W  Y LK+L
Sbjct: 559  KLRVLRFYDAQIWGSSWIWRRNDRYKSPYTECKFHLSGDFKFLSNHLRSLYWDGYPLKSL 618

Query: 168  PLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINL 227
            P NF PE L+EL + +S +EQ+WEG K   KLKFI+L HSQ+L K PD    P L RI L
Sbjct: 619  PSNFHPEKLLELKMCFSQLEQLWEGNKSFQKLKFIELSHSQHLIKAPDFSGAPKLRRIIL 678

Query: 228  LNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVS 287
              CT+L  +  SI     L  L+L GC++L SF  +I+  S   +  S C  L + P V 
Sbjct: 679  EGCTSLVKVHPSIGALKKLIFLNLEGCKNLKSFLSSIHLESLQILTLSGCSKLKKLPEVQ 738

Query: 288  G---NIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGG 344
            G   N+ EL L  T I+ +P SIE L  L   +L  CK L+ +   I KLKSL  L L  
Sbjct: 739  GAMDNLSELSLKGTAIKGLPLSIEYLNGLALFNLEECKSLESLPGCIFKLKSLKTLILSN 798

Query: 345  CSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLEN 404
            C  L+  PEI E ME L E+ L +T +R LPSSIE+L GL  L L +C  LASLPE +  
Sbjct: 799  CLRLKKLPEIQENMESLKELFLDDTGLRELPSSIEHLNGLVLLKLKNCKRLASLPESICK 858

Query: 405  LKSLKYLN------------------------AEFSAIGQLPSSISDLNQLKKLKFSGCR 440
            L SL+ L                         A  S I ++PSSI+ L +L+ L  +GC+
Sbjct: 859  LTSLQTLTLSGCSELKKLPDDMGSLQCLLKLKANGSGIQEVPSSITLLTRLQVLSLAGCK 918

Query: 441  G-----------LVLPPL-------LSGLSSLTELHLTDCNITE--IPADIGSLSSIVWL 480
            G           L   P        L+ L SL +L+L+D N+ E  +P+D+ SLS +  L
Sbjct: 919  GGGSKSRNLALSLRASPTDGLRLSSLTVLHSLKKLNLSDRNLLEGALPSDLSSLSWLECL 978

Query: 481  ALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEIPS 540
             LS N+F  +PTS+ +L  LR L + +C  LQSLPELP  +  L A +C  L+T    PS
Sbjct: 979  DLSRNNFITVPTSLSRLPHLRRLIVEHCKNLQSLPELPSSIKELLANDCTSLETF-SYPS 1037

Query: 541  SVEELDASMLESIYEHSSGIMDGILFFDFTNCLKLNEKEAHKKILADSQQ-RIQHMASAS 599
            S   L                 G   F+F+NC +L   E    + A  Q+ R+      S
Sbjct: 1038 SAYPLRKF--------------GDFNFEFSNCFRLVGNEQSDTVEAILQEIRLVASIQKS 1083

Query: 600  LRLCYEMVHYTPYGLCNCFPGSEIPDWFSNQCSGSSLTIQLPRRSCGRNLVGFALCAVIQ 659
            +        Y         PGS IP+WF++Q  G S+T++LP      N +G A CAV  
Sbjct: 1084 MAPSEHSARYGESRYDAVVPGSRIPEWFTHQSEGDSITVELPPGCYNTNSIGLAACAVFH 1143

Query: 660  FEEDIDASGKYCNVKCN----YNFETKTRLEANNNVDDYYNLSLNGSMD-SDHVLLGFEP 714
             +  +   G+      N    ++ +  T +  +     ++   L   +D  DH+ + F  
Sbjct: 1144 PKFSMGKIGRSAYFSVNESGGFSLDNTTSMHFSKADHIWFGYRLISGVDLRDHLKVAFA- 1202

Query: 715  CWNTEVPDDGNNQTTISFEFSVECKNEKCHQVKCCGVCPVYANPNDNKPNTLKLILGSEE 774
               ++VP +                      VK CGV  VY        + L    G E+
Sbjct: 1203 --TSKVPGE---------------------VVKKCGVRLVYEQDEMGNASFLSAPCGREK 1239

Query: 775  ECTKIR 780
            E  +I+
Sbjct: 1240 EMNQIQ 1245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770134|emb|CAN76615.1| hypothetical protein VITISV_040107 [Vitis vinifera]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 308/846 (36%), Positives = 423/846 (50%), Gaps = 106/846 (12%)

Query: 1    MFLDIACFLKGEDKDYVTKIQDDPNF-AHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGR 59
            +F DIACF KG+DKDYV K+    +F     +  L+DKSLVTIS  NK+ MHDL+Q+MG 
Sbjct: 413  IFXDIACFFKGQDKDYVIKLLKSCDFFPEIGIRNLIDKSLVTIS-YNKLCMHDLIQEMGW 471

Query: 60   EIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMS 119
            EIVRQES K+PGK SRLW  +DV  +L  N GT+A+EG++LNLS  +++H   NVF  M+
Sbjct: 472  EIVRQESXKDPGKXSRLWVNDDVIDMLTTNTGTEAVEGMVLNLSTLKELHFSVNVFTKMN 531

Query: 120  NLRFLKFYMPEYKGV------------PIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTL 167
             LR  +FY  +  G             P    K HL    ++L   LR L+W  Y LK+L
Sbjct: 532  KLRVXRFYDAQIWGSSWIWRRNDRYKSPYTECKFHLSGDFKFLSNHLRSLYWDGYPLKSL 591

Query: 168  PLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINL 227
            P NF PE L+EL + +S +EQ+WEG K   KLKFI+L HSQ+L K PD    P L RI L
Sbjct: 592  PSNFHPEKLLELKMCFSQLEQLWEGNKSFQKLKFIELSHSQHLIKXPDFSGAPKLRRIIL 651

Query: 228  LNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVS 287
              CT+L  +  SI     L  L+L GC++L SF  +I+  S   +  S C  L + P V 
Sbjct: 652  EGCTSLVKVHPSIGALKKLIFLNLEGCKNLKSFLSSIHLESLQILTLSGCSKLKKXPEVQ 711

Query: 288  G---NIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGG 344
            G   N+ EL L  T I+ +P SIE L  L   +L  CK L+ +     KLKSL  L L  
Sbjct: 712  GAMDNLSELSLKGTAIKGLPLSIEYLNGLALFNLEECKSLESLPGCXFKLKSLKTLILSN 771

Query: 345  CSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLEN 404
            C  L+  PEI E ME L E+ L +T +R LPSSIE+L GL  L L +C  LASLPE +  
Sbjct: 772  CLRLKKLPEIQENMESLKELFLDDTGLRELPSSIEHLNGLVLLKLKNCKRLASLPESICK 831

Query: 405  LKSLKYLN------------------------AEFSAIGQLPSSISDLNQLKKLKFSGCR 440
            L SL+ L                         A  S I ++PSSI+ L +L+ L  +GC+
Sbjct: 832  LTSLQTLTLSGCSELKKLPDDMGSLQCLLKLKANGSGIQEVPSSITLLTRLQVLSLAGCK 891

Query: 441  G-----------LVLPPL-------LSGLSSLTELHLTDCNITE--IPADIGSLSSIVWL 480
            G           L   P        L+ L SL +L+L+D N+ E  +P+D+ SLS +  L
Sbjct: 892  GGGSKSRNLALSLRASPTDGLRLSSLTVLHSLKKLNLSDRNLLEGALPSDLSSLSWLECL 951

Query: 481  ALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEIPS 540
             LS N+F  +PTS+ +L  LR L + +C  LQSLPELP  +  L A +C  L+T    PS
Sbjct: 952  DLSRNNFITVPTSLSRLPHLRRLIVEHCKNLQSLPELPSSIKELLANDCTSLETF-SYPS 1010

Query: 541  SVEELDASMLESIYEHSSGIMDGILFFDFTNCLKLNEKEAHKKILADSQQ-RIQHMASAS 599
            S   L                 G   F+F+NC +L   E    + A  Q+ R+      S
Sbjct: 1011 SAYPLRKF--------------GDFNFEFSNCFRLVGNEQSDTVEAILQEIRLVASIQKS 1056

Query: 600  LRLCYEMVHYTPYGLCNCFPGSEIPDWFSNQCSGSSLTIQLPRRSCGRNLVGFALCAVIQ 659
            +        Y         PGS IP+WF++Q  G S+T++LP      N +G A CAV  
Sbjct: 1057 MAPSEHSARYGESRYDAVVPGSRIPEWFTHQSEGDSITVELPPGCYNTNSIGLAACAVFH 1116

Query: 660  FEEDIDASGKYCNVKCN----YNFETKTRLEANNNVDDYYNLSLNGSMD-SDHVLLGFEP 714
             +  +   G+      N    ++ +  T +  +     ++   L   +D  DH+ + F  
Sbjct: 1117 PKFSMGKIGRSAYFSVNESGGFSLDNTTSMHFSKADHIWFGYRLISGVDLRDHLKVAFA- 1175

Query: 715  CWNTEVPDDGNNQTTISFEFSVECKNEKCHQVKCCGVCPVYANPNDNKPNTLKLILGSEE 774
               ++VP +                      VK CGV  VY        + L    G E+
Sbjct: 1176 --TSKVPGE---------------------VVKKCGVRLVYEQDEMGNASFLSAPCGREK 1212

Query: 775  ECTKIR 780
            E  +I+
Sbjct: 1213 EMNQIQ 1218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487015|ref|XP_003633506.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 316/859 (36%), Positives = 451/859 (52%), Gaps = 106/859 (12%)

Query: 1    MFLDIACFLKGEDKDYVTKIQDDPNF-AHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGR 59
            +FLD+ACF  GEDKD+VT+I D  NF A   + VL DK  +TI  +NK+ MHDLLQ+MGR
Sbjct: 647  IFLDVACFFNGEDKDFVTRILDACNFYAKSGIGVLGDKCFITI-LDNKIWMHDLLQQMGR 705

Query: 60   EIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMS 119
            +IVRQE  K+PGK SRL + E V  VL +  GT+AIEGILLNLS+   IH+    FV M 
Sbjct: 706  DIVRQECPKDPGKWSRLCYPEVVNRVLTRKMGTEAIEGILLNLSRLTRIHITTEAFVMMK 765

Query: 120  NLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIEL 179
            NLR LK Y           +KV L +   +   ELRYLHWH Y L++LPL F  E+L+EL
Sbjct: 766  NLRLLKIYWDLESAFMREDNKVKLSKDFEFPSYELRYLHWHGYPLESLPLGFYAEDLVEL 825

Query: 180  NLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPD-LVETPNLERINLLNCTNLPYISS 238
            ++ YS+++++WEG     KL  I +  SQ+L +IPD +V  PNLE++ L  C++L  +  
Sbjct: 826  DMCYSSLKRLWEGDLLLEKLNTIRVSCSQHLIEIPDIIVSAPNLEKLILDGCSSLLEVHP 885

Query: 239  SIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSG---NIIELRL 295
            SI   N L +L+L  C+ L+ FP  I  ++   ++FS C  L +FP + G   N++EL L
Sbjct: 886  SIGKLNKLILLNLKNCKKLICFPSIIDMKALEILNFSSCSGLKKFPNIQGNMENLLELYL 945

Query: 296  WNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEIL 355
             +T IEE+PSSI  LT L  LDL +CK LK + TSICKLKSL  L L GCS LE+FPE+ 
Sbjct: 946  ASTAIEELPSSIGHLTGLVLLDLKWCKNLKSLPTSICKLKSLENLSLSGCSKLESFPEVT 1005

Query: 356  EKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDL------------------------GD 391
            E M++L E+ L  T I  LP SIE L+GL  L+L                          
Sbjct: 1006 ENMDNLKELLLDGTPIEVLPLSIERLKGLILLNLRKCKNLVSLSNGMCNLTSLETLIVSG 1065

Query: 392  CSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCR----------- 440
            CS+L +LP  L +L+ L  L+A+ +AI Q P SI  L  L+ L + GC+           
Sbjct: 1066 CSQLNNLPRNLGSLQRLAQLHADGTAIAQPPDSIVLLRNLQVLIYPGCKILAPNSLGSLF 1125

Query: 441  -------------GLVLPPLLSGLSSLTELHLTDCNITE--IPADIGSLSSIVWLALSGN 485
                         GL LP   S   SL+ L ++DC + E  IP  I SL S+  L LS N
Sbjct: 1126 SFWLLHGNSSNGIGLRLPSSFSSFRSLSNLDISDCKLIEGAIPNGICSLISLKKLDLSRN 1185

Query: 486  HFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEIPSSVEEL 545
            +F  +P  + +L+ L+ L L  C  L  +PELP  +  ++A NC  L     +P S    
Sbjct: 1186 NFLSIPAGISELTNLKDLRLGQCQSLTGIPELPPSVRDIDAHNCTAL-----LPGS---- 1236

Query: 546  DASMLESIYEHSSGIMDGILFFDFTNCLKLNEKEAHKKILAD---------SQQRIQHMA 596
                       S   + G+ F  F NC K  E ++      +         S    +   
Sbjct: 1237 ----------SSVSTLQGLQFL-FYNCSKPVEDQSSDDKRTELQIFPHIYVSSTASESSV 1285

Query: 597  SASLRLCYEMVHYTPYGLCNCFPGSEIPDWFSNQCSGSSLTIQLPRRSCGRNLVGFALCA 656
            + S  +  +++    + +   FPG+ IPDW  +Q  GSS+ IQLP      + +GFALC+
Sbjct: 1286 TTSPVMMQKLLENIAFSI--VFPGTGIPDWIWHQNVGSSIKIQLPTDWYSDDFLGFALCS 1343

Query: 657  VIQFEEDIDASGKYCNVKCNYNFETKTRLEANNNVDDYYNLSLNGSM-DSDHVLLGFEPC 715
            V++   +         + C+ N +     +  +  D  ++    G++  S+HV LG++PC
Sbjct: 1344 VLEHLPE--------RIICHLNSDV---FDYGDLKDFGHDFHWTGNIVGSEHVWLGYQPC 1392

Query: 716  WNTEV--PDDGN--NQTTISFEFSVECKNEKCHQVKCCGVCPVYANPNDN-KPNTLKLIL 770
                +   +D N  N   ISFE +    +   + VK CGVC +YA   +  +P   K + 
Sbjct: 1393 SQLRLFQFNDPNEWNHIEISFEAAHRFNSSASNVVKKCGVCLIYAEDLEGIRPQNRKQLK 1452

Query: 771  GSEEECTKIRILHDKVGMS 789
             S   C  +    D+ G++
Sbjct: 1453 SS--GCNVVERSSDRAGLN 1469

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145016|ref|XP_002325496.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862371|gb|EEE99877.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  424 bits (1090), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 285/787 (36%), Positives = 410/787 (52%), Gaps = 99/787 (12%)

Query: 1    MFLDIACFLKGEDKDYVTKIQDDPNF-AHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGR 59
            +FLD+ACF +G   D+V +I D   F      SVL+D+ L+ IS ++KV+MHDLLQ+M  
Sbjct: 433  IFLDVACFFRGHRVDFVKRILDGCGFKTDTGFSVLIDRCLIKIS-DDKVEMHDLLQEMAH 491

Query: 60   EIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMS 119
            E+VR+ESV E G++SRLW  +DVY VL  N GT  +EGI L++SKTR+I L       M 
Sbjct: 492  EVVRKESVDELGRQSRLWSPKDVYQVLTNNLGTGKVEGIFLDVSKTREIELSSTALERMY 551

Query: 120  NLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIEL 179
             LR LK Y  E  GV     +VHL  GL  L EELRYLHW  Y L +LP NF P+NL+EL
Sbjct: 552  KLRLLKIYNSE-AGV---KCRVHLPHGLESLSEELRYLHWDGYPLTSLPCNFRPQNLVEL 607

Query: 180  NLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSS 239
            NL  SNV+Q+W G +    LK ++L + +++T +PDL +  NLER+NL  CT+L    SS
Sbjct: 608  NLSSSNVKQLWRGDQNLVNLKDVNLSNCEHITLLPDLSKARNLERLNLQFCTSLVKFPSS 667

Query: 240  IQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTR 299
            +Q+ + L  L L GC+ L++ P          ++ S C N+ + P  +  +  L L  T 
Sbjct: 668  VQHLDKLVDLDLRGCKRLINLPSRFNSSFLETLNLSGCSNIKKCPETARKLTYLNLNETA 727

Query: 300  IEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKME 359
            +EE+P SI  L  L  L+L  CK L  +  ++  LKSL   ++ GCS++  FP+    + 
Sbjct: 728  VEELPQSIGELGGLVALNLKNCKLLVNLPENMYLLKSLLIADISGCSSISRFPDFSRNIR 787

Query: 360  HLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLK------------- 406
            +L    L  TAI  LPSSI  L  L  LDL  CS +   P+   N++             
Sbjct: 788  YLY---LNGTAIEELPSSIGDLRELIYLDLSGCSSITEFPKVSRNIRELYLDGTAIREIP 844

Query: 407  --------------------SLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCR------ 440
                                +L++  A  + I +LPS + +L  L  L+   C+      
Sbjct: 845  SSIQLNVCVNFMNCTCETANNLRFFQAASTGITKLPSPVGNLKGLACLEVGNCKYLKGIE 904

Query: 441  ---GLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQL 497
                L LP     L  L +L+L  C I+++P  +G LSS+  L LSGN+FE +P ++ +L
Sbjct: 905  CLVDLHLPERDMDLKYLRKLNLDGCCISKVPDSLGCLSSLEVLDLSGNNFETMPMNIYKL 964

Query: 498  SQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEIPSSVEELDASMLESIYEHS 557
             +L+YL L +C  L+S+P LP  L  L+A +C+ L                    I   S
Sbjct: 965  VELQYLGLRSCRKLKSIPRLPRRLSKLDAHDCQSL--------------------IKVSS 1004

Query: 558  SGIMDGILF-FDFTNCLKLNEKEAHKKILADSQQRIQHMASASLRLCYEMVHYTPYGLCN 616
            S +++G +F F FTNCL+L       +IL  S  + Q        L  E +H  P G  +
Sbjct: 1005 SYVVEGNIFEFIFTNCLRL---PVINQILLYSLLKFQ--------LYTERLHQVPAGTSS 1053

Query: 617  -CFPGSEIPDWFSNQCSGSSLTIQLPRRSCGRNLVGFALCAVIQFEEDIDASGKYCNVKC 675
             C PG   P+WFS+Q  GS++T  L         +GF+L AVI F     + G    VKC
Sbjct: 1054 FCLPGDVTPEWFSHQSWGSTVTFHLSSHWANSEFLGFSLGAVIAFR----SFGHSLQVKC 1109

Query: 676  NYNFETKTRLEANNNVDDYYNLSLNG-----SMDSDHVLLGFEPCWNTEVPDDGNNQTTI 730
             Y+F  K     + +  D Y   L+G      MDS+H+ +GF+PC   +  D  +  + +
Sbjct: 1110 TYHFRNK-----HGDSHDLY-CYLHGWYDERRMDSEHIFIGFDPCLIAKEHDMFSEYSEV 1163

Query: 731  SFEFSVE 737
            S EF +E
Sbjct: 1164 SVEFQLE 1170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537139|ref|XP_002509636.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223549535|gb|EEF51023.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 291/773 (37%), Positives = 408/773 (52%), Gaps = 135/773 (17%)

Query: 1    MFLDIACFLKGEDKDYVTKIQDDPNFA-HYCLSVLVDKSLVTISCNNKVQMHDLLQKMGR 59
            +FLDIACF +GE  + VTKI D   F+    L +LVDKSL+TI  N+KV+MHDLLQ+MG+
Sbjct: 432  IFLDIACFFRGESVEMVTKILDGCGFSTKIGLCLLVDKSLITI-LNDKVEMHDLLQEMGK 490

Query: 60   EIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMS 119
            EIV QES K+P +R+RLW++ED+ HV  +N GT+ IEG+ LN S    I L+ N F  M 
Sbjct: 491  EIVLQES-KQPSQRTRLWNHEDILHVFSRNLGTETIEGMCLNTSMINKIELNSNAFGRMY 549

Query: 120  NLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIEL 179
            NLRFLKFY     G     +K+ L QGL  L  ELRYLHWH Y LK+LP      NL+ L
Sbjct: 550  NLRFLKFYQSYIHGGFKECTKIRLPQGLDSLSNELRYLHWHGYPLKSLPARIHLMNLVVL 609

Query: 180  NLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSS 239
             LPYS V+++W+G K   KLK IDL +SQ L +I +L                       
Sbjct: 610  VLPYSKVKRLWKGCKDLKKLKVIDLSYSQALIRITELTTA-------------------- 649

Query: 240  IQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTR 299
                +NLS + L+GC++L S P    ++S                               
Sbjct: 650  ----SNLSYMKLSGCKNLRSMPSTTRWKS------------------------------- 674

Query: 300  IEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKME 359
                         L TL++++C +L+ + +SICKLKSL  L L GCSNL++FPEILE M+
Sbjct: 675  -------------LSTLEMNYCTKLESLPSSICKLKSLESLSLCGCSNLQSFPEILESMD 721

Query: 360  HLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIG 419
             L  + L  TAI+ LPSSIE L+GL  + L +C  LA LPE   NLK+L +L   F    
Sbjct: 722  RLKVLVLNGTAIKELPSSIERLKGLSSIYLENCRNLAHLPESFCNLKALYWLFLTFCP-- 779

Query: 420  QLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVW 479
                      +L+KL          P  LS L++L +L +  CN+ ++P+ +  LS I  
Sbjct: 780  ----------KLEKL----------PEKLSNLTTLEDLSVGVCNLLKLPSHMNHLSCISK 819

Query: 480  LALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEIP 539
            L LSGN+F++LP S K L  LR L +S+C  L+SLPE+P  L  ++A +C+ L+T+  + 
Sbjct: 820  LDLSGNYFDQLP-SFKYLLNLRCLDISSCRRLRSLPEVPHSLTDIDAHDCRSLETISGLK 878

Query: 540  SSVEELDASMLESIYEHSSGIMDGILFFD----FTNCLKLNEKEAHKKILADSQQRIQHM 595
                     + +  Y H+        F+D    FT+C K++E  A    LAD+Q  IQ +
Sbjct: 879  Q--------IFQLKYTHT--------FYDKKIIFTSCFKMDE-SAWSDFLADAQFWIQKV 921

Query: 596  ASASLRLCYEMVHYTPYGLCNCFPGSEIPDWFSNQCSGSSLTIQLPRRSCGRNLVGFALC 655
            A         M           +PGS+IP WF  Q  GSS+ IQL  RS   NL+GF LC
Sbjct: 922  A---------MRAKDEESFSIWYPGSKIPKWFGYQSEGSSIVIQLHPRSHKHNLLGFTLC 972

Query: 656  AVIQFEEDIDASGKYCNVKCNYNFETKTRLEANNNVDDYYNLS----LNGSMDSDHVLLG 711
             V+ FE++ +    + +V C Y  +   R E  +  + Y + +     N  + SDHV+L 
Sbjct: 973  VVLAFEDEFEYHNSFFDVLCVYQLKN-YRGEYTDCKEVYSSRTHVSGKNKYVGSDHVILF 1031

Query: 712  FEPCW-NTEVPDDGNNQTTISFEFSVECKNEKCHQ---VKCCGVCPVYANPND 760
            ++P + +TE  +   N+   SFEF  +     C Q   VK C   P+Y+   +
Sbjct: 1032 YDPNFSSTEANELSYNEA--SFEFYWQNNESCCMQSSMVKKCAAIPLYSREEE 1082

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798990|gb|AGF69193.1| TMV resistance protein N-like protein 7 [Vitis labrusca]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 291/740 (39%), Positives = 394/740 (53%), Gaps = 93/740 (12%)

Query: 1    MFLDIACFLKGEDKDYVTKIQDDPNFAHYCLSV--LVDKSLVTISCNNKVQMHDLLQKMG 58
            +FLDIA F KG DKD+V  I D   F  + + +  L DKSL+TIS  NK+ MHDLLQ+MG
Sbjct: 437  IFLDIAFFYKGHDKDFVGDILDSCGF-FFGIGIRNLEDKSLITIS-ENKLCMHDLLQEMG 494

Query: 59   REIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNM 118
             EIVRQ+S + PG+RSRL  +ED+ HVL  N GT+A+EGI L+LS +++++   + F  M
Sbjct: 495  WEIVRQKS-EVPGERSRLRVHEDINHVLTTNTGTEAVEGIFLDLSASKELNFSIDAFTKM 553

Query: 119  SNLRFLKF----------YMPEYKGVPIM------------SSKVHLDQGLRYLPEELRY 156
              LR LK           Y+ + + +                +K+HL +  ++L   LR 
Sbjct: 554  KRLRLLKICNVQIDRSLGYLSKKELIAYTHDVWIERNYLYTQNKLHLYEDSKFLSNNLRD 613

Query: 157  LHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDL 216
            L+WH Y LK+ P NF PE L+ELN+ +S ++Q WEGKK   KLK I L HSQ+LTKIPD 
Sbjct: 614  LYWHGYPLKSFPSNFHPEKLVELNMCFSRLKQPWEGKKGFEKLKSIKLSHSQHLTKIPDF 673

Query: 217  VETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSD 276
               PNL R+ L  CT+L  +  SI     L  L+L GC+ L SF  +I+  S   +  S 
Sbjct: 674  SGVPNLRRLILKGCTSLVEVHPSIGALKKLIFLNLEGCKKLKSFSSSIHMESLQILTLSG 733

Query: 277  CVNLTEFPLVSGN---IIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICK 333
            C  L +FP V GN   +  L L  T I+ +P SIE LT L  L+L  CK L+ +  SI K
Sbjct: 734  CSKLKKFPEVQGNMEHLPNLSLEGTAIKGLPLSIENLTGLALLNLKECKSLESLPRSIFK 793

Query: 334  LKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEG---------- 383
            LKSL  L L  C+ L+  PEI E ME L+E+ L  + I  LPSSI  L G          
Sbjct: 794  LKSLKTLILSNCTRLKKLPEIQENMESLMELFLDGSGIIELPSSIGCLNGLVFLNLKNCK 853

Query: 384  --------------LRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLN 429
                          LR L L  CSEL  LP+ L +L+ L  LNA+ S + ++P SI+ L 
Sbjct: 854  KLASLPQSFCELTSLRTLTLCGCSELKDLPDNLGSLQCLTELNADGSGVQEVPPSITLLT 913

Query: 430  QLKKLKFSGCRG-------------------LVLPPLLSGLSSLTELHLTDCNITE--IP 468
             L+ L  +GC+G                   L LP   SGL SL  L L  CN++E  +P
Sbjct: 914  NLQILSLAGCKGGESKSRNMIFSFHSSPTEELRLPS-FSGLYSLRVLILQRCNLSEGALP 972

Query: 469  ADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKN 528
            +D+GS+ S+  L LS N F  +P S+  LS+LR L L  C  LQSLPELP  +  L A +
Sbjct: 973  SDLGSIPSLERLDLSRNSFITIPASLSGLSRLRSLTLEYCKSLQSLPELPSSVESLNAHS 1032

Query: 529  CKRLQTLPEIPSSVEELDASMLESIYEHSSGIMDGILFFDFTNCLKLNEKEAHKKILADS 588
            C  L+T             +   S Y        G L F+FTNC +L E +    I+   
Sbjct: 1033 CTSLETF------------TCSSSAYTSKKF---GDLRFNFTNCFRLGENQG-SDIVGAI 1076

Query: 589  QQRIQHMASASLRLCYEMVHYTPYGLCNCF-PGSEIPDWFSNQCSGSSLTIQLPRRSCGR 647
             + IQ M+S    L  +    TP+   N   PG+ IP+WF +Q  G S+ I+LP+     
Sbjct: 1077 LEGIQLMSSIPKFLVPDRGIPTPHNEYNALVPGNRIPEWFRHQSVGCSVNIELPQHWYNT 1136

Query: 648  NLVGFALCAVIQFEEDIDAS 667
             L+G A CA + F+  +D +
Sbjct: 1137 KLMGLAFCAALNFKGAMDGN 1156

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798988|gb|AGF69192.1| TMV resistance protein N-like protein 6 [Vitis labrusca]

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 292/742 (39%), Positives = 397/742 (53%), Gaps = 100/742 (13%)

Query: 1    MFLDIACFLKGEDKDYVTKIQDDPNFAHYCLSV--LVDKSLVTISCNNKVQMHDLLQKMG 58
            +FLDIA F KG DKD+V  I D   F  + + +  L DKSL+TIS  NK+ MHDLLQ+MG
Sbjct: 429  IFLDIAFFYKGHDKDFVGDILDSCGF-FFGIGIRNLEDKSLITIS-ENKLCMHDLLQEMG 486

Query: 59   REIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNM 118
             EIVRQ+S + PG+RSRL  +ED+ HVL  N GT+A+EGI L+LS++++++   + F  M
Sbjct: 487  WEIVRQKS-EVPGERSRLRVHEDINHVLTTNTGTEAVEGIFLDLSESKELNFSIDAFTKM 545

Query: 119  SNLRFLKF----------YMPEYKGVPIM------------SSKVHLDQGLRYLPEELRY 156
              LR LK           Y+ + + +                +K+HL +  ++L   LR 
Sbjct: 546  KRLRLLKICNVQIDRSLGYLSKKELIAYTHDVWTERNYLYTQNKLHLYEDSKFLSNNLRD 605

Query: 157  LHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDL 216
            L+WH Y LK+ P NF PE L+ELN+ +S ++Q+WEGKK   KLK I L HSQ+LTK PD 
Sbjct: 606  LYWHGYPLKSFPSNFHPEKLVELNMCFSRLKQLWEGKKGFEKLKSIKLSHSQHLTKTPDF 665

Query: 217  VETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSD 276
               PNL R+ L  CT+L  +  SI     L  L+L GC+ L SF  +I+  S   +  S 
Sbjct: 666  SGVPNLRRLILKGCTSLVEVHPSIGALKKLIFLNLEGCKKLKSFSSSIHMESLQILTLSG 725

Query: 277  CVNLTEFPLVSGN---IIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICK 333
            C  L +FP V GN   +  L L  T I+ +P SIE LT L  L+L  CK L+ +  SI K
Sbjct: 726  CSKLKKFPEVQGNMEHLPNLSLEGTAIKGLPLSIENLTGLALLNLKECKSLESLPRSIFK 785

Query: 334  LKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCS 393
            LKSL  L L  C+ L+  PEI E ME L+E+ L  + I  LPSSI  L GL  L+L +C 
Sbjct: 786  LKSLKTLILSNCTRLKKLPEIQENMESLMELFLDGSGIIELPSSIGCLNGLVFLNLKNCK 845

Query: 394  ELASLPEK------------------------LENLKSLKYLNAEFSAIGQLPSSISDLN 429
            +LASLP+                         L +L+ L  LNA+ S I ++P SI+ L 
Sbjct: 846  KLASLPQSFCELTSLGTLTLCGCSELKELPDDLGSLQCLAELNADGSGIQEVPPSITLLT 905

Query: 430  QLKKLKFSGCRG-------LVLP-----------PLLSGLSSLTELHLTDCNITE--IPA 469
             L+KL  +GC+G       +V             P  SGL SL  L L  CN++E  +P+
Sbjct: 906  NLQKLSLAGCKGGDSKSRNMVFSFHSSPTEELRLPSFSGLYSLRVLILQRCNLSEGALPS 965

Query: 470  DIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNC 529
            D+GS+ S+  L LS N F  +P S+  LS+LR L L  C  LQSLPELP  +  L A +C
Sbjct: 966  DLGSIPSLERLDLSRNSFITIPASLSGLSRLRSLTLEYCKSLQSLPELPSSVESLNAHSC 1025

Query: 530  KRLQTLPEIPSSVEELDASMLESIYEHSSGIMD----GILFFDFTNCLKLNEKEAHKKIL 585
              L+T                   +  SSG       G L F+FTNC +L E +    I+
Sbjct: 1026 TSLET-------------------FSCSSGAYTSKKFGDLRFNFTNCFRLGENQG-SDIV 1065

Query: 586  ADSQQRIQHMASASLRLCYEMVHYTPYGLCNCF-PGSEIPDWFSNQCSGSSLTIQLPRRS 644
                + IQ M+S    L    +  TP+   N   PGS IP+WF +Q  G S+ I+LP   
Sbjct: 1066 GAILEGIQLMSSIPKFLVPWGIP-TPHNEYNALVPGSRIPEWFRHQSVGCSVNIELPPHW 1124

Query: 645  CGRNLVGFALCAVIQFEEDIDA 666
                L+G A CA + F+  +D 
Sbjct: 1125 YNTKLMGLAFCAALNFKGAMDG 1146

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563202|ref|XP_002522604.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223538080|gb|EEF39691.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 269/683 (39%), Positives = 364/683 (53%), Gaps = 108/683 (15%)

Query: 1    MFLDIACFLKGEDKDYVTKIQDDPNF-AHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGR 59
            +FL IAC  + ED+D VT+  D   F A   +S LVDKSL+TIS  NK++MHDLLQ+MGR
Sbjct: 476  IFLHIACLFESEDRDRVTQALDGCGFSADIGISTLVDKSLLTIS-KNKLKMHDLLQEMGR 534

Query: 60   EIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMS 119
            EIVRQES K P +RSRLW+ +D+Y VL++N GT+AI GILL +S+ R + L+ N F  +S
Sbjct: 535  EIVRQES-KRPSERSRLWNPDDIYKVLEENTGTEAIVGILLGMSEARKLELNRNAFTRIS 593

Query: 120  NLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIEL 179
            NL+FL   M    G      KV   +GL  LP++LRYL+WH Y LK LP NF P NLIEL
Sbjct: 594  NLKFLILRMSNNCGGFEEECKVQFPEGLESLPQQLRYLYWHGYPLKFLPANFHPTNLIEL 653

Query: 180  NLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSS 239
            N PYS +E +WEG K                                         + SS
Sbjct: 654  NFPYSRLEGLWEGDK-----------------------------------------VPSS 672

Query: 240  IQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTR 299
            I     L+ +SL   +++ SFP  I  +S   +D S C NL  FP VS NI  L L  T 
Sbjct: 673  IGQLTKLTFMSLRCSKNIRSFPTTIDLQSLETLDLSGCSNLKIFPEVSRNIRYLYLNETA 732

Query: 300  IEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKME 359
            I+EVP SIE L+ L  L++  C  L+ + ++I KLKSL  L L GC  LE+FPEILE   
Sbjct: 733  IQEVPLSIEHLSKLVVLNMKNCNELECIPSTIFKLKSLGVLILSGCKKLESFPEILETTN 792

Query: 360  HLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIG 419
            HL  + L ETA+ NLP +   L+ L  L+  DCS+L  LP+ ++NLKSL  L A      
Sbjct: 793  HLQHLSLDETAMVNLPDTFCNLKALNMLNFSDCSKLGKLPKNMKNLKSLAELRA------ 846

Query: 420  QLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVW 479
                              GC    LP  L  LSS+ EL+L+  N   +PA I        
Sbjct: 847  -----------------GGCNLSTLPADLKYLSSIVELNLSGSNFDTMPAGIN------- 882

Query: 480  LALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEIP 539
                            QLS+LR+++++ C  LQSLPELP  + YL A++C+ L ++    
Sbjct: 883  ----------------QLSKLRWINVTGCKRLQSLPELPPRIRYLNARDCRSLVSI---- 922

Query: 540  SSVEELDASMLESIYEHS-SGIMDGILFFDFTNCLKLNEKEAHKKILADSQQRIQHMASA 598
                    S L+ ++E   S  +D   F  FTNC KL++ +    ILA +Q +IQH A  
Sbjct: 923  --------SGLKQLFELGCSNSLDDETFV-FTNCFKLDQ-DNWADILASAQLKIQHFAMG 972

Query: 599  SLRLCYEMVHYTPYGLCNCFPGSEIPDWFSNQCSGSSLTIQ-LPRRSCGRNLVGFALCAV 657
              R  Y+   Y    +C  +PG+EIP+WF+++  GSS+TIQ LP        +GF++C V
Sbjct: 973  --RKHYDRELYDETFICFTYPGTEIPEWFADKSIGSSVTIQHLPPDWLNHRFLGFSVCLV 1030

Query: 658  IQFEEDIDASGKYCNVKCNYNFE 680
            + F++          V C  NF+
Sbjct: 1031 VAFDDRFLCEYPRGVVACKCNFQ 1053

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	815
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.655	0.412	0.361	1.6e-93
TAIR|locus:2118116	1895	WRKY19 [Arabidopsis thaliana (	0.468	0.201	0.452	2.1e-74
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.533	0.356	0.382	4.7e-71
TAIR|locus:2155189	980	AT5G49140 [Arabidopsis thalian	0.493	0.410	0.364	2.1e-64
TAIR|locus:2146243	900	AT5G18360 [Arabidopsis thalian	0.483	0.437	0.371	2.3e-64
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.534	0.345	0.355	2.7e-64
TAIR|locus:2153072	1229	AT5G51630 [Arabidopsis thalian	0.652	0.432	0.324	7.5e-62
TAIR|locus:2827629	1355	AT2G17050 [Arabidopsis thalian	0.515	0.309	0.344	6.5e-61
TAIR|locus:2122965	1210	AT4G19510 [Arabidopsis thalian	0.482	0.324	0.367	1.1e-60
TAIR|locus:2170333	1197	CSA1 "constitutive shade-avoid	0.512	0.349	0.360	1.3e-60

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 810 (290.2 bits), Expect = 1.6e-93, Sum P(2) = 1.6e-93
 Identities = 201/556 (36%), Positives = 303/556 (54%)

Query:     1 MFLDIACFLKGEDKDYVTKIQDDPNFA-HYCLSVLVDKSLVTISCNNKVQMHDLLQKMGR 59
             +FL I+CF   +  DYV K+ D   +A    +++L +KSL+ +  N  V++HDLL++MGR
Sbjct:   433 IFLYISCFYNMKQVDYVRKLLDLCGYAAEIGITILTEKSLI-VESNGCVKIHDLLEQMGR 491

Query:    60 EIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMS 119
             E+VRQ++V  P +R  LW  ED+ H+L +N GT  +EGI LNLS+  ++      F  +S
Sbjct:   492 ELVRQQAVNNPAQRLLLWDPEDICHLLSENSGTQLVEGISLNLSEISEVFASDRAFEGLS 551

Query:   120 NLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIEL 179
             NL+ L FY   + G     ++VHL  GL YLP +LRYL W  Y LKT+P  F PE L+EL
Sbjct:   552 NLKLLNFYDLSFDG----ETRVHLPNGLSYLPRKLRYLRWDGYPLKTMPSRFFPEFLVEL 607

Query:   180 NLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSS 239
              +  SN+E++W+G +    LK +DL   +YL ++PDL +  NLE +NL  C +L  ++ S
Sbjct:   608 CMSNSNLEKLWDGIQPLRNLKKMDLSRCKYLVEVPDLSKATNLEELNLSYCQSLVEVTPS 667

Query:   240 IQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTR 299
             I+N   LS   L  C  L   P  I  +S   V  S C +L  FP +S N   L L +T+
Sbjct:   668 IKNLKGLSCFYLTNCIQLKDIPIGIILKSLETVGMSGCSSLKHFPEISWNTRRLYLSSTK 727

Query:   300 IEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKME 359
             IEE+PSSI  L+ L  LD+S C+RL+ + + +  L SL  L L GC  LE  P+ L+ + 
Sbjct:   728 IEELPSSISRLSCLVKLDMSDCQRLRTLPSYLGHLVSLKSLNLDGCRRLENLPDTLQNLT 787

Query:   360 HLLEIDLRETA-IRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLN-AEFSA 417
              L  +++     +   P     +E LR   + + S +  +P ++ NL  L+ L+ +E   
Sbjct:   788 SLETLEVSGCLNVNEFPRVSTSIEVLR---ISETS-IEEIPARICNLSQLRSLDISENKR 843

Query:   418 IGQLPSSISDLNQLKKLKFSGCRXXXXXXXXXXXXXXXXX-XXXD-CNITEIPADIGSLS 475
             +  LP SIS+L  L+KLK SGC                      D  +I E+P +IG+L 
Sbjct:   844 LASLPVSISELRSLEKLKLSGCSVLESFPLEICQTMSCLRWFDLDRTSIKELPENIGNLV 903

Query:   476 SIVWLALSGNHFERLPTSVKQLSQLRYLHLSNC-----NMLQSL-PELPIYLVYLEAKNC 529
             ++  L  S     R P S+ +L++L+ L + N       +L SL P L  +   L A + 
Sbjct:   904 ALEVLQASRTVIRRAPWSIARLTRLQVLAIGNSFFTPEGLLHSLCPPLSRF-DDLRALSL 962

Query:   530 KRLQTLPEIPSSVEEL 545
               +  + EIP+S+  L
Sbjct:   963 SNMN-MTEIPNSIGNL 977

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118116 WRKY19 [Arabidopsis thaliana (taxid:3702)]

 Score = 759 (272.2 bits), Expect = 2.1e-74, Sum P(2) = 2.1e-74
 Identities = 179/396 (45%), Positives = 228/396 (57%)

Query:     1 MFLDIACFLKGEDKDYVTKIQDDPNF-AHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGR 59
             +FLDIACF    DKD V  + D   F AH     LVDKSL+TIS +N V M   +Q  GR
Sbjct:  1058 IFLDIACFFNRIDKDNVAMLLDGCGFSAHVGFRGLVDKSLLTISQHNLVDMLSFIQATGR 1117

Query:    60 EIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMS 119
             EIVRQES   PG RSRLW+ + + HV   + GT AIEGI L++   +    + NVF  M 
Sbjct:  1118 EIVRQESADRPGDRSRLWNADYIRHVFINDTGTSAIEGIFLDMLNLK-FDANPNVFEKMC 1176

Query:   120 NLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIEL 179
             NLR LK Y  + +        V   QGL YLP +LR LHW  Y L +LP +F+PENL+EL
Sbjct:  1177 NLRLLKLYCSKAEE----KHGVSFPQGLEYLPSKLRLLHWEYYPLSSLPKSFNPENLVEL 1232

Query:   180 NLPYSNVEQIWEGKKQAF--------KLKFIDLHHSQYLTKIPDLVETPNLERINLLNCT 231
             NLP S  +++W+GKK  F        KLK + L +S  LTKIP L    NLE I+L  C 
Sbjct:  1233 NLPSSCAKKLWKGKKARFCTTNSSLEKLKKMRLSYSDQLTKIPRLSSATNLEHIDLEGCN 1292

Query:   232 NLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNII 291
             +L  +S SI     L  L+L GC  L + P  +   S   ++ S C  L  FP +S N+ 
Sbjct:  1293 SLLSLSQSISYLKKLVFLNLKGCSKLENIPSMVDLESLEVLNLSGCSKLGNFPEISPNVK 1352

Query:   292 ELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETF 351
             EL +  T I+E+PSSI+ L  LE LDL   + LK + TSI KLK L  L L GC +LE F
Sbjct:  1353 ELYMGGTMIQEIPSSIKNLVLLEKLDLENSRHLKNLPTSIYKLKHLETLNLSGCISLERF 1412

Query:   352 PEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKL 387
             P+   +M+ L  +DL  T I+ LPSSI YL  L +L
Sbjct:  1413 PDSSRRMKCLRFLDLSRTDIKELPSSISYLTALDEL 1448

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006952 "defense response" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 4.7e-71, P = 4.7e-71
 Identities = 175/457 (38%), Positives = 257/457 (56%)

Query:     1 MFLDIACFLKGEDKDYVTKIQDDPNF-AHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGR 59
             +FLDIACF + E+ DYVT + +         +  LVDK L+T+S +N+++MHD+LQ M +
Sbjct:   434 VFLDIACFFRSENVDYVTSLLNSHGVDVSGVVKDLVDKCLITLS-DNRIEMHDMLQTMAK 492

Query:    60 EI-VRQESV--------KEPGKRS----RLWHYEDVYHVLKKNKGTDAIEGILLNLSKTR 106
             EI ++ E++           G +     RLW  ED+  +L +  GTD I GI L+ SK R
Sbjct:   493 EISLKVETIGIRDCRWLSRHGNQCQWHIRLWDSEDICDLLTEGLGTDKIRGIFLDTSKLR 552

Query:   107 DIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKT 166
              + L    F  M NL++LK Y            K+HL +GL +LP EL YLHWH Y L++
Sbjct:   553 AMRLSAKAFQGMYNLKYLKIYDSHCSRGCEAEFKLHLRRGLSFLPNELTYLHWHGYPLQS 612

Query:   167 LPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERIN 226
             +PL+FDP+NL++L LP+S +E+IW+ +K    LK++DL HS  L +   L    NLER+N
Sbjct:   613 IPLDFDPKNLVDLKLPHSQLEEIWDDEKDVGMLKWVDLSHSINLRQCLGLANAHNLERLN 672

Query:   227 LLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLV 286
             L  CT+L  + S+I     L  L+L  C SL S P+ I  +S   +  S C +L +FPL+
Sbjct:   673 LEGCTSLKKLPSTINCLEKLIYLNLRDCTSLRSLPKGIKTQSLQTLILSGCSSLKKFPLI 732

Query:   287 SGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCS 346
             S N+  L L  T I+ +P SI+    L  L+L  CK+LK +S+ + KLK L  L L GCS
Sbjct:   733 SENVEVLLLDGTVIKSLPESIQTFRRLALLNLKNCKKLKHLSSDLYKLKCLQELILSGCS 792

Query:   347 NLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDL-GDCSELAS----LPEK 401
              LE FPEI E ME L  + + +T+I  +P  + +L  ++   L G  S ++     +P  
Sbjct:   793 QLEVFPEIKEDMESLEILLMDDTSITEMPKMM-HLSNIKTFSLCGTSSHVSVSMFFMPPT 851

Query:   402 LENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSG 438
             L     L  L     ++ +LP +I  L+ L+ L  SG
Sbjct:   852 L-GCSRLTDLYLSRCSLYKLPDNIGGLSSLQSLCLSG 887

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2155189 AT5G49140 [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 2.1e-64, Sum P(2) = 2.1e-64
 Identities = 152/417 (36%), Positives = 235/417 (56%)

Query:     1 MFLDIACFLKGEDKDYVTKIQDDPNF-AHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGR 59
             +FL IAC   GE+ D V ++  + +      L +L+DKSL+ I+ + ++ MH LL KMG+
Sbjct:   437 LFLHIACMFNGENIDLVKQMLVNSDLDVSLGLQLLLDKSLIQINDDREIVMHSLLLKMGK 496

Query:    60 EIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTR-DIHLDGNVFVNM 118
             E+V Q S  EPGKR  L++ ++  ++L  N G++A+ GI L+ S+ + D+ +   VF +M
Sbjct:   497 EVVCQHS-SEPGKRQFLFNTKETCNILSNNTGSEAVLGISLDTSEIQNDVFMSERVFEDM 555

Query:   119 SNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIE 178
              NL+FL+FY  +    P  S K+HL +GL YLP  +R LHW  Y +K +P  F PE L+E
Sbjct:   556 RNLKFLRFYNKKIDENP--SLKLHLPRGLNYLPA-VRLLHWDSYPMKYIPSQFRPECLVE 612

Query:   179 LNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISS 238
             L + +S V ++WEG +    LK IDL  S  L ++PDL +  +LE + L  C +L  + S
Sbjct:   613 LRMMHSKVVKLWEGTQTLAYLKTIDLSFSNNLVEVPDLSKAISLETLCLEGCQSLAELPS 672

Query:   239 SIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNT 298
             S+ N + L  L L  C  L   P +I   S   +D   C+ L  FP +S NI  + + NT
Sbjct:   673 SVLNLHRLKWLRLTMCEKLEVIPLHINLASLEVLDMEGCLKLKSFPDISKNIERIFMKNT 732

Query:   299 RIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKM 358
              IEE+P SI   + LE+LD+S C  LK + + + K  S+ ++ L   S +E  P+ ++ +
Sbjct:   733 GIEEIPPSISQWSRLESLDISGCLNLK-IFSHVPK--SVVYIYLTD-SGIERLPDCIKDL 788

Query:   359 E--HLLEID-LRE-TAIRNLPSSIEYLEGLRKLDLGDCSELASLPE-KLENLKSLKY 410
                H L +D  R+  ++  LPSSI+ L  +    L   S     P  K+E  KS+ +
Sbjct:   789 TWLHYLYVDNCRKLVSLPELPSSIKILSAINCESLERISSSFDCPNAKVEFSKSMNF 845

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2146243 AT5G18360 [Arabidopsis thaliana (taxid:3702)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 151/406 (37%), Positives = 229/406 (56%)

Query:     1 MFLDIACFLKGEDKDYVTKIQDDPNF-AHYCLSVLVDKSLVTIS-CNNKVQMHDLLQKMG 58
             +FL IAC   GE+ DYV +I         + L VL  +SL+ IS CN  + MH+LL+++G
Sbjct:   435 IFLHIACLFNGENVDYVKQILASSGLDVTFGLQVLTSRSLIHISRCNRTITMHNLLEQLG 494

Query:    59 REIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNM 118
             REIV ++S+ EPGKR  L    ++Y VL  N GT A+ GI L++SK  ++ L+   F  M
Sbjct:   495 REIVCEQSIAEPGKRQFLMDASEIYDVLADNTGTGAVLGISLDISKINELFLNERAFGGM 554

Query:   119 SNLRFLKFYMPEY-KGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLI 177
              NL FL+FY     K  P    ++HL +GL YLP +LR LHW  + + ++PL+F P+ L+
Sbjct:   555 HNLLFLRFYKSSSSKDQP----ELHLPRGLDYLPRKLRLLHWDAFPMTSMPLSFCPQFLV 610

Query:   178 ELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYIS 237
              +N+  S +E++WEG +    LK +DL  S+ L +IPDL +  N+E + L  C +L  + 
Sbjct:   611 VINIRESQLEKLWEGTQPLRSLKQMDLSKSENLKEIPDLSKAVNIEELCLSYCGSLVMLP 670

Query:   238 SSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWN 297
             SSI+N N L VL +  C  L   P N+   S   ++   C  L  FP +S  I  L L  
Sbjct:   671 SSIKNLNKLVVLDMKYCSKLEIIPCNMDLESLSILNLDGCSRLESFPEISSKIGFLSLSE 730

Query:   298 TRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEK 357
             T IEE+P+++     L  LD+S CK LK   T  C  K++ WL+L   + +E  P  ++K
Sbjct:   731 TAIEEIPTTVASWPCLAALDMSGCKNLK---TFPCLPKTIEWLDLSR-TEIEEVPLWIDK 786

Query:   358 MEHLLEIDLRETA-IRNLPSSIEYLEGLRKLDLGDCSELASLPEKL 402
             +  L ++ +     +R++ S I  LE ++ LD   C  + S P ++
Sbjct:   787 LSKLNKLLMNSCMKLRSISSGISTLEHIKTLDFLGCKNIVSFPVEI 832

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 665 (239.2 bits), Expect = 2.7e-64, P = 2.7e-64
 Identities = 158/445 (35%), Positives = 244/445 (54%)

Query:     1 MFLDIACFLKGEDKDYVTKIQDDPNFAHYC-LSVLVDKSLVTISCNNKVQMHDLLQKMGR 59
             +FLDIA F + E++ YV ++      A    ++ L DK L+ IS  ++V+M+DLL     
Sbjct:   465 VFLDIAYFFRFENESYVRRLLGSSAHADASEITDLADKFLIDIS-GDRVEMNDLLYTFAI 523

Query:    60 EIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMS 119
              +  Q S +      RL  + ++  VL        + G+ L++ + +++ LD + F  M 
Sbjct:   524 GLNSQASSENTTSERRLSKHSEIVDVLMNKAEATKVRGVYLDMFEVKEMGLDSDTFNKMD 583

Query:   120 NLRFLKFYMPE-YKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIE 178
             +LR+LKFY    ++      SK++  +GL +LP+ELRYL+W +Y  K LP+NFDP+NLI+
Sbjct:   584 DLRYLKFYNSHCHRECEAEDSKLNFPEGLEFLPQELRYLNWLKYPEKNLPINFDPKNLID 643

Query:   179 LNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISS 238
             L LPYS +EQIWE +K    L+++DL+HS  L  +  L     L+ INL  CT L  +  
Sbjct:   644 LKLPYSQIEQIWEEEKDTSNLQWLDLNHSSKLHSLSGLSRAQKLQSINLEGCTGLKTLPQ 703

Query:   239 SIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNT 298
              +QN  +L  L+L GC SL S P +I       +  S+C    EF L++ N+ EL L  T
Sbjct:   704 VLQNMESLMFLNLRGCTSLESLP-DITLVGLRTLILSNCSRFKEFKLIAKNLEELYLDGT 762

Query:   299 RIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKM 358
              I+E+PS+I  L  L +L L  CK L  +  SI  LK++  + L GCS+LE+FPE+ + +
Sbjct:   763 AIKELPSTIGDLQKLISLKLKDCKNLLSLPDSIGNLKAIQEIILSGCSSLESFPEVNQNL 822

Query:   359 EHLLEIDLRETAIRNLPSSIEYL---EGLRKLDLGDCSELASLPEKLENLKSLKYLNAEF 415
             +HL  + L  TAI+ +P  + +L   +GL      +C  L   P  +  L S++ L+   
Sbjct:   823 KHLKTLLLDGTAIKKIPDILHHLSPDQGLTSSQ-SNC-HLCEWPRGIYGLSSVRRLSLSS 880

Query:   416 SAIGQLPSSISDLNQLKKLKFSGCR 440
             +    LP SI  L  L  L    C+
Sbjct:   881 NEFRILPRSIGYLYHLNWLDLKHCK 905

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153072 AT5G51630 [Arabidopsis thaliana (taxid:3702)]

 Score = 630 (226.8 bits), Expect = 7.5e-62, Sum P(2) = 7.5e-62
 Identities = 182/561 (32%), Positives = 281/561 (50%)

Query:     1 MFLDIACFLKGEDKDYVTKIQDDPNFAHYCLSVLVDKSLVTISCNNK-VQMHDLLQKMGR 59
             +FL IAC L     +Y+  +  D N A   L +L +KSL+ IS  +K V+MH LLQK+GR
Sbjct:   430 IFLYIACLLNCCGVEYIISMLGD-N-AIIGLKILAEKSLIHISPLDKTVEMHSLLQKLGR 487

Query:    60 EIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLN-LSKTRDIHLDGNVFVNM 118
             +IVR ES   PGKR  L   ED+  V   N GT+ + GI LN L     + +D   F  M
Sbjct:   488 KIVRDESFGNPGKRRFLLDAEDICDVFTDNTGTETVLGISLNTLEINGTLSVDDKSFQGM 547

Query:   119 SNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIE 178
              NL+FLK +    +G       + L QGL  LP +LR LHW+++ L+ +P NF  E L+ 
Sbjct:   548 HNLQFLKVFENWRRGSG--EGILSLPQGLNSLPRKLRLLHWYKFPLRCMPSNFKAEYLVN 605

Query:   179 LNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISS 238
             L + YS +E++WEG +Q   LK +DL  S+ L +IPDL    NLE ++L +C +L  + S
Sbjct:   606 LEMAYSQLERLWEGTQQLGSLKKMDLSKSENLKEIPDLSYAVNLEEMDLCSCKSLVTLPS 665

Query:   239 SIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNT 298
             S++N + L VL ++ C ++   P ++   S   ++  DC  L  FP +S NI  L L  T
Sbjct:   666 SVRNLDKLRVLRMSSCSNVEVLPTDLNLESLDLLNLEDCSQLRSFPQISRNISILNLSGT 725

Query:   299 RIEEVPSS-IECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEK 357
              I+E  S  IE ++ L  L   FC  LK + ++  + + L  L +   S LE   E  + 
Sbjct:   726 AIDEESSLWIENMSRLTHLRWDFCP-LKSLPSNF-RQEHLVSLHMTH-SKLEKLWEGAQP 782

Query:   358 MEHLLEIDLR-ETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAE-F 415
               +L+ IDL     ++  P+ +  +  L  LDL  C  L ++P  +++L  L  LN    
Sbjct:   783 FGNLVNIDLSLSEKLKEFPN-LSKVTNLDTLDLYGCKSLVTVPSSIQSLSKLTELNMRRC 841

Query:   416 SAIGQLPSSISDLNQLKKLKFSGCRXXXXXXXXXXXXXXXXXXXXDCNITEIPADIGSLS 475
             + +  LP+ ++ L  L  L  SGC                     D  I E+P+ I    
Sbjct:   842 TGLEALPTDVN-LESLHTLDLSGC--SKLTTFPKISRNIERLLLDDTAIEEVPSWIDDFF 898

Query:   476 SIVWLALSG-NHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKR-LQ 533
              +  L++ G      + TS+ +L  +   + S+C  L    +         A   +R L+
Sbjct:   899 ELTTLSMKGCKRLRNISTSICELKCIEVANFSDCERLTEFDD---------ASMVRRILR 949

Query:   534 TLPEIPSSVEELDASMLESIY 554
             T+ ++ +  EE  AS L +I+
Sbjct:   950 TIDDLIALYEE--ASFLHAIF 968

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827629 AT2G17050 [Arabidopsis thaliana (taxid:3702)]

 Score = 554 (200.1 bits), Expect = 6.5e-61, Sum P(2) = 6.5e-61
 Identities = 158/459 (34%), Positives = 243/459 (52%)

Query:     1 MFLDIACFLKGEDKDYVTKIQDDPNF-AHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGR 59
             MFLDIACF +GE  DYV ++ +   F  H  + VLVDK LVTI    K++MH+L+Q +G+
Sbjct:   260 MFLDIACFFRGEKADYVMQLFEGCGFFPHVGIYVLVDKCLVTI-VKRKMEMHNLIQIVGK 318

Query:    60 EIVRQESVKEPGKRSRLWH-------YEDVYHVLK-KNKGT-DAIEGILLNLSKTRDIHL 110
              I  + +V E  +  RLW         ED    LK ++KGT + IE I L++S  +   +
Sbjct:   319 AISNEGTV-ELDRHVRLWDTSIIQPLLEDEETKLKGESKGTTEDIEVIFLDMSNLK-FFV 376

Query:   111 DGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLN 170
               + F +M NLRFLK Y       P    ++   + L+ LP ELR LHW  Y L++LP +
Sbjct:   377 KPDAFKSMHNLRFLKIYSSN----PGKHQRIRFREALQSLPNELRLLHWEDYPLQSLPQH 432

Query:   171 FDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNC 230
             FDP +L+ELN+PYS ++++W G K    LK + L HSQ L +I +L+++ N+E I+L  C
Sbjct:   433 FDPTHLVELNMPYSKLQKLWGGTKNLEMLKMVRLSHSQDLVEIEELIKSKNIEVIDLQGC 492

Query:   231 TNLPYISSSIQNFNNLSVLSLAGCRSLVS--------FPRNIYFRSPIAVDFSDCVNLTE 282
             T +    ++ ++  +L V++L+GC  + S        FPRN+     + +  +    +T 
Sbjct:   493 TKIQSFPAT-RHLQHLRVINLSGCVEIKSTQLEEFQGFPRNL---KELYLSGTGIREVTS 548

Query:   283 -FPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLE 341
                L S  +++L     R++ +P     L +L  L LS C +L+ +      LK L    
Sbjct:   549 SIHLSSLEVLDLSNCK-RLQNLPMGKGNLASLIKLMLSGCSKLQNIQDLPTNLKELY--- 604

Query:   342 LGGCSNLETFPEILEKMEHLLEIDLRETA-IRNLPSSIEYLEGLRKLDLGDCSELASLPE 400
             L G S  E  P  +  +  L+  D      +++LP  +  L  L  L L  CSEL S+P+
Sbjct:   605 LAGTSIREV-PSSICHLTQLVVFDAENCKKLQDLPMGMGNLISLTMLILSGCSELRSIPD 663

Query:   401 KLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGC 439
                NL+   +LN   + I +LPSS  DL +L  L  + C
Sbjct:   664 LPRNLR---HLNLAETPIKKLPSSFEDLTKLVSLDLNHC 699

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122965 AT4G19510 [Arabidopsis thaliana (taxid:3702)]

 Score = 614 (221.2 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 151/411 (36%), Positives = 231/411 (56%)

Query:    37 KSL-VTISCNNKVQMHDLLQKMGREIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAI 95
             KS+ + I+C  +++MHDLL  MG+EI +++S+++ G+R RLW+++D+  +L+ N GT+ +
Sbjct:   473 KSVFLDIACFFRIEMHDLLHAMGKEIGKEKSIRKAGERRRLWNHKDIRDILEHNTGTECV 532

Query:    96 EGILLNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLR---YLPE 152
              GI LN+S+ R I L    F  +S L+FLKF+              H+ Q  +   + P+
Sbjct:   533 RGIFLNMSEVRRIKLFPAAFTMLSKLKFLKFHSSHCSQ---WCDNDHIFQCSKVPDHFPD 589

Query:   153 ELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTK 212
             EL YLHW  Y    LP +FDP+ L++L+L YS+++Q+WE +K    L+++DL  S+ L  
Sbjct:   590 ELVYLHWQGYPYDCLPSDFDPKELVDLSLRYSHIKQLWEDEKNTESLRWVDLGQSKDLLN 649

Query:   213 IPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAV 272
             +  L    NLER++L  CT+L  + S ++  N L  L+L  C SL S P+    +S   +
Sbjct:   650 LSGLSRAKNLERLDLEGCTSLDLLGS-VKQMNELIYLNLRDCTSLESLPKGFKIKSLKTL 708

Query:   273 DFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSIC 332
               S C+ L +F ++S +I  L L  T IE V   IE L +L  L+L  C++LK +   + 
Sbjct:   709 ILSGCLKLKDFHIISESIESLHLEGTAIERVVEHIESLHSLILLNLKNCEKLKYLPNDLY 768

Query:   333 KLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRE-TAIRNLP-----SSIEYLEGLRK 386
             KLKSL  L L GCS LE+ P I EKME  LEI L + T+I+  P     S+++     R 
Sbjct:   769 KLKSLQELVLSGCSALESLPPIKEKME-CLEILLMDGTSIKQTPEMSCLSNLKICSFCRP 827

Query:   387 LDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFS 437
             + + D + L  LP    +  S  YL      I +LP   S L  L+ L  S
Sbjct:   828 V-IDDSTGLVVLPFSGNSFLSDLYLTN--CNIDKLPDKFSSLRSLRCLCLS 875

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2170333 CSA1 "constitutive shade-avoidance1" [Arabidopsis thaliana (taxid:3702)]

 Score = 630 (226.8 bits), Expect = 1.3e-60, P = 1.3e-60
 Identities = 156/433 (36%), Positives = 238/433 (54%)

Query:     3 LDIACFLKGEDKDYVTKIQDDPNFAHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGREIV 62
             LDIACF + +D++YV  + D    ++  L  LV+K ++ I    KV MHD L  + +E+ 
Sbjct:   468 LDIACF-RSQDENYVASLLDSDGPSNI-LEDLVNKFMINIYAG-KVDMHDTLYMLSKELG 524

Query:    63 RQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSK-TRDIHLDGNVFVNMSNL 121
             R+ +  +   R RLWH+  +  VL KNKG   I  I L+LS  TR      + F  M +L
Sbjct:   525 REATATDRKGRHRLWHHHTIIAVLDKNKGGSNIRSIFLDLSDITRKWCFYRHAFAMMRDL 584

Query:   122 RFLKFYMPEYKGVPIMSSKVHLDQGLRYLP-EELRYLHWHQYSLKTLPLNFDPENLIELN 180
             R+LK Y            K++  +GL  LP  E+RYLHW ++ LK +P +F+P NL++L 
Sbjct:   585 RYLKIYSTHCPQECESDIKLNFPEGL-LLPLNEVRYLHWLKFPLKEVPQDFNPGNLVDLK 643

Query:   181 LPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSSI 240
             LPYS +E++WE  K A KLK+++L+HS+ L  +  L +  NL+ +NL  CT L  +   +
Sbjct:   644 LPYSEIERVWEDNKDAPKLKWVNLNHSKKLNTLAGLGKAQNLQELNLEGCTALKEMHVDM 703

Query:   241 QNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRI 300
             +N   L  L+L GC SL S P  I   S   +  S C     F ++S  +  L L  T I
Sbjct:   704 ENMKFLVFLNLRGCTSLKSLPE-IQLISLKTLILSGCSKFKTFQVISDKLEALYLDGTAI 762

Query:   301 EEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEH 360
             +E+P  I  L  L  L++  CK+LKR+  S+ +LK+L  L L GCS L  FPE    M  
Sbjct:   763 KELPCDIGRLQRLVMLNMKGCKKLKRLPDSLGQLKALEELILSGCSKLNEFPETWGNMSR 822

Query:   361 LLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEF----S 416
             L  + L ETAI+++P  +     +R+L L    +++ LP+ L     L++L+ ++    +
Sbjct:   823 LEILLLDETAIKDMPKILS----VRRLCLNKNEKISRLPDLLNKFSQLQWLHLKYCKNLT 878

Query:   417 AIGQLPSSISDLN 429
              + QLP ++  LN
Sbjct:   879 HVPQLPPNLQYLN 891

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IMP

GO:0010114 "response to red light" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	815
PLN03210	1153	PLN03210, PLN03210, Resistant to P	6e-74
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-13
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-07
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	2e-07
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	3e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
pfam07725	20	pfam07725, LRR_3, Leucine Rich Repeat	0.002

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  262 bits (670), Expect = 6e-74
 Identities = 202/685 (29%), Positives = 310/685 (45%), Gaps = 112/685 (16%)

Query: 1    MFLDIACFLKGEDKDYVTKIQDDPNF-AHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGR 59
            +F  IAC   GE  + +  +  + +   +  L  LVDKSL+ +   + V+MH LLQ+MG+
Sbjct: 441  IFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGK 499

Query: 60   EIVRQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMS 119
            EIVR +S  EPG+R  L   +D+  VL+ N GT  + GI L++ +  ++H+  N F  M 
Sbjct: 500  EIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMR 558

Query: 120  NLRFLKFYMPEYKGVPIMSSKV--HLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLI 177
            NL FLKFY  ++        +V  HL +G  YLP +LR L W +Y L+ +P NF PENL+
Sbjct: 559  NLLFLKFYTKKWD----QKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLV 614

Query: 178  ELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYIS 237
            +L +  S +E++W+G      L+ IDL  S+ L +IPDL    NLE + L +C++L  + 
Sbjct: 615  KLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELP 674

Query: 238  SSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWN 297
            SSIQ  N L  L ++ C +L   P  I  +S   ++ S C  L  FP +S NI  L L  
Sbjct: 675  SSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDE 734

Query: 298  TRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEK 357
            T IEE PS++  L NL+ L              +C++KS           L    + L  
Sbjct: 735  TAIEEFPSNLR-LENLDEL-------------ILCEMKS---------EKLWERVQPLTP 771

Query: 358  MEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSA 417
            +  +L   L    + ++PS +E                                      
Sbjct: 772  LMTMLSPSLTRLFLSDIPSLVE-------------------------------------- 793

Query: 418  IGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSI 477
               LPSSI +L++L+ L+   C  L   P    L SL  L L+ C+      DI +  +I
Sbjct: 794  ---LPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIST--NI 848

Query: 478  VWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEA---KNCKRLQT 534
              L LS    E +P  +++ S L +L ++ CN LQ +      L +LE     +C  L  
Sbjct: 849  SDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908

Query: 535  LPEIPSSVEELDASMLESIYEHSSGIMDGILFFDFTNCLKLNEKEAHKKILADSQQRIQH 594
                 S  E   A+  ++I+      +   +  +F NC  L+     + +L       Q 
Sbjct: 909  ASWNGSPSEVAMAT--DNIHSK----LPSTVCINFINCFNLD----QEALL------QQQ 952

Query: 595  MASASLRLCYEMVHYTPYGLCNCFPGSEIPDWFSNQCSGSSLT-IQLPRRSCGRNLVGFA 653
                 L L                 G E+P +F+++ +G+SLT I L   S  +    F 
Sbjct: 953  SIFKQLIL----------------SGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFR 996

Query: 654  LCAVIQFEE-DIDASGKYCNVKCNY 677
             CAV+  E   I +      V C +
Sbjct: 997  ACAVVDSESFFIISVSFDIQVCCRF 1021

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 73.1 bits (179), Expect = 2e-13
 Identities = 66/212 (31%), Positives = 105/212 (49%), Gaps = 12/212 (5%)

Query: 346 SNLETFPEILEKMEHLL---EIDLRETAIRNLPSSIEYLEGLRKLDLGD--CSELASLPE 400
            +  +  +  E + +LL    +DL    +R+  S +  L  L  LDL +   +++  L  
Sbjct: 77  PSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIG 136

Query: 401 KLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLT 460
            L++  +LK L+   + I  LPS + +L  LK L  S      LP LLS LS+L  L L+
Sbjct: 137 LLKS--NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194

Query: 461 DCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIY 520
              I+++P +I  LS++  L LS N    L +S+  L  L  L LSN N L+ LPE    
Sbjct: 195 GNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPESIGN 253

Query: 521 LVYLEA--KNCKRLQTLPEIPS--SVEELDAS 548
           L  LE    +  ++ ++  + S  ++ ELD S
Sbjct: 254 LSNLETLDLSNNQISSISSLGSLTNLRELDLS 285

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 67.7 bits (165), Expect = 7e-12
 Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 5/225 (2%)

Query: 292 ELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKS-LCWLELGGCSNLET 350
            L L   R+    S +  LTNL +LDL     +  +   I  LKS L  L+L   + +E+
Sbjct: 97  SLDLNLNRLRSNISELLELTNLTSLDLD-NNNITDIPPLIGLLKSNLKELDLSD-NKIES 154

Query: 351 FPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKY 410
            P  L  + +L  +DL    + +LP  +  L  L  LDL   ++++ LP ++E L +L+ 
Sbjct: 155 LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEE 213

Query: 411 LNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPAD 470
           L+   ++I +L SS+S+L  L  L+ S  +   LP  +  LS+L  L L++  I+ I + 
Sbjct: 214 LDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS- 272

Query: 471 IGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLP 515
           +GSL+++  L LSGN        +  L  L  L L+    L++L 
Sbjct: 273 LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALE 317

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.9 bits (145), Expect = 5e-09
 Identities = 55/159 (34%), Positives = 84/159 (52%), Gaps = 10/159 (6%)

Query: 374 LPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLN-AEFSAIGQLPSSISDLNQLK 432
           +P+ I     L+ LDLG    +  +P  L NL SL++L  A    +GQ+P    +L Q+K
Sbjct: 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR---ELGQMK 212

Query: 433 KLK--FSGCRGLV--LPPLLSGLSSLTELHLTDCNIT-EIPADIGSLSSIVWLALSGNHF 487
            LK  + G   L   +P  + GL+SL  L L   N+T  IP+ +G+L ++ +L L  N  
Sbjct: 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272

Query: 488 E-RLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLE 525
              +P S+  L +L  L LS+ ++   +PEL I L  LE
Sbjct: 273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.6 bits (134), Expect = 1e-07
 Identities = 78/333 (23%), Positives = 146/333 (43%), Gaps = 11/333 (3%)

Query: 196 AFKLKFIDLHHSQYLTKIP-DLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGC 254
              L+ +DL ++    +IP D+    +L+ ++L     +  I +S+ N  +L  L+LA  
Sbjct: 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198

Query: 255 RSLVSFPRNIYFRSPIAVDFSDCVNLT-EFPLVSGNIIELR----LWNTRIEEVPSSIEC 309
           + +   PR +     +   +    NL+ E P   G +  L     ++N     +PSS+  
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258

Query: 310 LTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRET 369
           L NL+ L L   K    +  SI  L+ L  L+L   S     PE++ ++++L  + L   
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318

Query: 370 AIR-NLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLN-AEFSAIGQLPSSISD 427
                +P ++  L  L+ L L        +P+ L    +L  L+ +  +  G++P  +  
Sbjct: 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378

Query: 428 LNQLKKL-KFSGCRGLVLPPLLSGLSSLTELHLTDCNIT-EIPADIGSLSSIVWLALSGN 485
              L KL  FS      +P  L    SL  + L D + + E+P++   L  + +L +S N
Sbjct: 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438

Query: 486 HFE-RLPTSVKQLSQLRYLHLSNCNMLQSLPEL 517
           + + R+ +    +  L+ L L+       LP+ 
Sbjct: 439 NLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS 471

Length = 968

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 54.4 bits (130), Expect = 2e-07
 Identities = 66/209 (31%), Positives = 94/209 (44%), Gaps = 31/209 (14%)

Query: 344 GCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLE 403
           G S L T P+ L    H+  + + +  + +LP+       LR L++   ++L SLP    
Sbjct: 209 GESGLTTLPDCLPA--HITTLVIPDNNLTSLPA---LPPELRTLEVSG-NQLTSLPVLPP 262

Query: 404 NLKSLKYLNAEFSAIGQLPSSISDL----NQLKKLKFSGCRGLVLPPLLSGLSSLTELHL 459
            L  L   +   + +  LPS +  L    NQL  L        VLPP       L EL +
Sbjct: 263 GLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLP-------VLPP------GLQELSV 309

Query: 460 TDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPI 519
           +D  +  +PA    L  + W     N    LPT     S L+ L +S+ N L SLP LP 
Sbjct: 310 SDNQLASLPALPSELCKL-WA--YNNQLTSLPTLP---SGLQELSVSD-NQLASLPTLPS 362

Query: 520 YLVYLEAKNCKRLQTLPEIPSSVEELDAS 548
            L  L A N  RL +LP +PS ++EL  S
Sbjct: 363 ELYKLWAYN-NRLTSLPALPSGLKELIVS 390

Length = 788

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 50.5 bits (120), Expect = 3e-06
 Identities = 62/236 (26%), Positives = 105/236 (44%), Gaps = 37/236 (15%)

Query: 280 LTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCW 339
           LT  P++   ++EL +++  +  +P+    L  L      F  +L  +      L+ L  
Sbjct: 254 LTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWI----FGNQLTSLPVLPPGLQELSV 309

Query: 340 LELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLP 399
            +    + L + P +  ++  L   + + T++  LPS      GL++L + D ++LASLP
Sbjct: 310 SD----NQLASLPALPSELCKLWAYNNQLTSLPTLPS------GLQELSVSD-NQLASLP 358

Query: 400 EKLENLKSLKYLNAEFSAIGQLPSSISDL--------------NQLKKLKFSGCRGLVLP 445
                L  L   N   +++  LPS + +L              ++LK+L  SG R   LP
Sbjct: 359 TLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLP 418

Query: 446 PLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLR 501
            L SGL SL+   +    +T +P  +  LSS   + L GN     P S + L  LR
Sbjct: 419 MLPSGLLSLS---VYRNQLTRLPESLIHLSSETTVNLEGN-----PLSERTLQALR 466

Length = 788

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.9 bits (111), Expect = 3e-05
 Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 27/244 (11%)

Query: 169 LNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLL 228
           +     NL EL+L  + +E +    +    LK +DL  +        L    NL  ++L 
Sbjct: 135 IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194

Query: 229 NCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSG 288
               +  +   I+  + L  L L+          N       ++      NL        
Sbjct: 195 GN-KISDLPPEIELLSALEELDLS---------NNSIIELLSSLS-----NLK------- 232

Query: 289 NIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNL 348
           N+  L L N ++E++P SI  L+NLETLDLS   ++  +S S+  L +L  L+L    N 
Sbjct: 233 NLSGLELSNNKLEDLPESIGNLSNLETLDLS-NNQISSIS-SLGSLTNLRELDL--SGNS 288

Query: 349 ETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSL 408
            +    L  +  LL   L    +      ++    L   ++   +   S PE L  L+SL
Sbjct: 289 LSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNI-LSNGETSSPEALSILESL 347

Query: 409 KYLN 412
             L 
Sbjct: 348 NNLW 351

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 453 SLTELHLTDCNITEIPADI-GSLSSIVWLALSGNHFERL-PTSVKQLSQLRYLHLSNCN 509
           +L  L L++  +T IP      L ++  L LSGN+   + P +   L  LR L LS  N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.8 bits (111), Expect = 5e-05
 Identities = 80/315 (25%), Positives = 136/315 (43%), Gaps = 41/315 (13%)

Query: 198 KLKFIDLHHSQYLTKIPDLV-ETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRS 256
           KL  +DL  +    +IP+LV +  NLE ++L +      I  ++ +   L VL L   + 
Sbjct: 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344

Query: 257 LVSFPRNIYFRSPIAVDFSDCVNLT-EFP---LVSGNIIELRLWNTRIE-EVPSSIECLT 311
               P+N+   + + V      NLT E P     SGN+ +L L++  +E E+P S     
Sbjct: 345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS----- 399

Query: 312 NLETLDLSFCKRLKRV-----------STSICKLKSLCWLELGGCSNLETFPEILEKMEH 360
                 L  C+ L+RV            +   KL  + +L++   +           M  
Sbjct: 400 ------LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453

Query: 361 LLEIDL-RETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAI- 418
           L  + L R      LP S    + L  LDL       ++P KL +L  L  L    + + 
Sbjct: 454 LQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS 512

Query: 419 GQLPSSISDLNQLKKL-----KFSGCRGLVLPPLLSGLSSLTELHLTDCNIT-EIPADIG 472
           G++P  +S   +L  L     + SG     +P   S +  L++L L+   ++ EIP ++G
Sbjct: 513 GEIPDELSSCKKLVSLDLSHNQLSG----QIPASFSEMPVLSQLDLSQNQLSGEIPKNLG 568

Query: 473 SLSSIVWLALSGNHF 487
           ++ S+V + +S NH 
Sbjct: 569 NVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 430 QLKKLKFSGCRGLVLPP-LLSGLSSLTELHLTDCNITEIPAD-IGSLSSIVWLALSGNHF 487
            LK L  S  R  V+P     GL +L  L L+  N+T I  +    L S+  L LSGN+ 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 6e-04
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 4/76 (5%)

Query: 438 GCRGLVLPPLLSGLSSLTELHLTDCNIT-EIPADIGSLSSIVWLALSGNHFE-RLPTSVK 495
           G RG  +P  +S L  L  ++L+  +I   IP  +GS++S+  L LS N F   +P S+ 
Sbjct: 429 GLRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG 487

Query: 496 QLSQLRYLHLSNCNML 511
           QL+ LR L+L N N L
Sbjct: 488 QLTSLRILNL-NGNSL 502

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.5 bits (100), Expect = 0.001
 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 351 FPEILEKMEHLLEIDLRETAIR-NLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLK 409
            P  + K+ HL  I+L   +IR N+P S+  +  L  LDL   S   S+PE L  L SL+
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 410 YLNAEFSAI-GQLPSSI 425
            LN   +++ G++P+++
Sbjct: 494 ILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|191828 pfam07725, LRR_3, Leucine Rich Repeat

 Score = 36.2 bits (85), Expect = 0.002
 Identities = 13/20 (65%), Positives = 17/20 (85%)

Query: 175 NLIELNLPYSNVEQIWEGKK 194
           NL+ELNL YS +E++WEG K
Sbjct: 1   NLVELNLRYSKLEKLWEGTK 20

This Pfam entry includes some LRRs that fail to be detected by the pfam00560 model. Length = 20

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	815
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.95
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.94
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.94
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.94
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.92
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.77
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.75
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.66
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.65
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.51
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.47
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.47
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.45
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.38
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.23
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.97
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.94
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.91
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.89
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.89
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.84
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.8
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.71
PRK15386	426	type III secretion protein GogB; Provisional	98.67
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.62
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.62
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.57
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.54
PLN03150	623	hypothetical protein; Provisional	98.32
PLN03150	623	hypothetical protein; Provisional	98.26
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.21
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.21
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.19
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.17
PRK15386	426	type III secretion protein GogB; Provisional	98.08
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.07
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.02
KOG4341	483	consensus F-box protein containing LRR [General fu	97.96
KOG4341	483	consensus F-box protein containing LRR [General fu	97.95
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.83
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.82
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.78
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.74
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.68
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.56
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.54
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.52
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.48
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.3
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.0
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.0
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.99
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.82
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.54
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.23
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.91
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.67
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.44
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.24
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.66
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.97
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.79
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.48
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.29
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	90.61
PF07725	20	LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Le	89.59
KOG4308	478	consensus LRR-containing protein [Function unknown	87.85
smart00370	26	LRR Leucine-rich repeats, outliers.	85.82
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.82
smart00370	26	LRR Leucine-rich repeats, outliers.	81.8
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	81.8
KOG0473	326	consensus Leucine-rich repeat protein [Function un	81.74

>PLN03210 Resistant to P

Probab=100.00  E-value=3.2e-71  Score=681.32  Aligned_cols=644  Identities=31%  Similarity=0.493  Sum_probs=483.2

Q ss_pred             CEeEEeeecCCCChhHHHHhhcCCCc-hhhcHHhhhcCccEEEccCCeEEecHHHHHHHHHHHHhcccCCCCCcccccch
Q 003496            1 MFLDIACFLKGEDKDYVTKIQDDPNF-AHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGREIVRQESVKEPGKRSRLWHY   79 (815)
Q Consensus         1 iFl~~a~F~~~~~~~~l~~lw~a~gf-~~~~i~~L~~rsli~~~~~~~~~MHDLl~d~a~~i~~~e~~~~~~~~~~l~~~   79 (815)
                      +|+||||||+|++++++..++.++|+ ++.|++.|++||||++. +++++||||+||||++|+++++ .+|++|+|+|++
T Consensus       441 ~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~  518 (1153)
T PLN03210        441 IFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDA  518 (1153)
T ss_pred             hhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCH
Confidence            69999999999999999999999999 99999999999999998 7899999999999999999998 799999999999


Q ss_pred             hHHHHHHhhCccccceeEEEecCCCCcceeeccccccccCCceEEEEeCCCCCCccccCcccccCCCCCCCCcCcceEEe
Q 003496           80 EDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHW  159 (815)
Q Consensus        80 ~di~~vl~~~~~~~~v~~i~l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l  159 (815)
                      +||++|+.+++|++++++|+++.+...+..+...+|.+|++|++|+++.+.+..  .......+|.++..+|.+||+|+|
T Consensus       519 ~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~--~~~~~~~lp~~~~~lp~~Lr~L~~  596 (1153)
T PLN03210        519 KDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQ--KKEVRWHLPEGFDYLPPKLRLLRW  596 (1153)
T ss_pred             HHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccc--cccceeecCcchhhcCcccEEEEe
Confidence            999999999999999999999999999999999999999999999998765421  122446789999999999999999


Q ss_pred             CCCCCCCCCCCCCCccceeeecCCCCcccccccccCCCCccEEecCCCCCCCcCCCCCCCCCCcEEecCCCCCCCCcccc
Q 003496          160 HQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSS  239 (815)
Q Consensus       160 ~~~~l~~lp~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~  239 (815)
                      .+|+++.+|..|.+.+|++|+|+++.++.+|.++..+++|+.|+|+++..+..+|+++.+++|+.|++++|..+..+|.+
T Consensus       597 ~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~s  676 (1153)
T PLN03210        597 DKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSS  676 (1153)
T ss_pred             cCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchh
Confidence            99999999999999999999999999999999999999999999999998899999999999999999999999999999


Q ss_pred             cCCCCcccEEecCCCCCCcccCCcccCCCCcEEEecCCCCCCccCCCcccceEEEecCccccccchhhhccCCCCEEecc
Q 003496          240 IQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLS  319 (815)
Q Consensus       240 l~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~  319 (815)
                      ++++++|+.|++++|..++.+|..+.+++|+.|++++|..+..+|....+++.|++.++.+..+|..+ .+++|+.|.+.
T Consensus       677 i~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~  755 (1153)
T PLN03210        677 IQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILC  755 (1153)
T ss_pred             hhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-ccccccccccc
Confidence            99999999999999999999999888999999999999999999998899999999999999998776 57888888887


Q ss_pred             CCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCC-CccccCchhccCCCCcEEecCCCCCCCcc
Q 003496          320 FCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRET-AIRNLPSSIEYLEGLRKLDLGDCSELASL  398 (815)
Q Consensus       320 ~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~-~l~~lp~~l~~l~~L~~L~L~~~~~~~~l  398 (815)
                      ++.... +...+..+                .+......++|+.|++++| .+.++|.+++++++|+.|++++|..++.+
T Consensus       756 ~~~~~~-l~~~~~~l----------------~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L  818 (1153)
T PLN03210        756 EMKSEK-LWERVQPL----------------TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL  818 (1153)
T ss_pred             ccchhh-cccccccc----------------chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence            654211 11111100                0111222356666666666 34467777777777888888777766655


Q ss_pred             chhhhccccccccccccccCCCCCchhhhhcccceEEecCCCCccCCcccCCCCCCCEEEecCCCC-cccCcccCCCCCC
Q 003496          399 PEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNI-TEIPADIGSLSSI  477 (815)
Q Consensus       399 ~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~~~l-~~lp~~l~~l~~L  477 (815)
                      |..+ ++                                              ++|+.|++++|.. ..+|..   .++|
T Consensus       819 P~~~-~L----------------------------------------------~sL~~L~Ls~c~~L~~~p~~---~~nL  848 (1153)
T PLN03210        819 PTGI-NL----------------------------------------------ESLESLDLSGCSRLRTFPDI---STNI  848 (1153)
T ss_pred             CCCC-Cc----------------------------------------------cccCEEECCCCCcccccccc---cccc
Confidence            5422 22                                              3344444444421 112221   2456


Q ss_pred             CeeeccCCcCccCchhhhccCCcceecccccccccCCCCcc---cccceeccccccccCCCCC--CCCchhhhhhhhhhh
Q 003496          478 VWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELP---IYLVYLEAKNCKRLQTLPE--IPSSVEELDASMLES  552 (815)
Q Consensus       478 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~~L~~lp~l~---~sL~~L~i~~C~~L~~l~~--~p~~l~~L~~~~~~~  552 (815)
                      +.|+|++|.++.+|.++..+++|+.|++++|+.++.+|..+   .+|+.|++.+|++|+.++.  .|.....+  .    
T Consensus       849 ~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~--~----  922 (1153)
T PLN03210        849 SDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMA--T----  922 (1153)
T ss_pred             CEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhh--c----
Confidence            66666666666666666667777777777777777666533   3455566677777765542  22211111  0    


Q ss_pred             hhccCCCcccccceeccccccccchhhhhhhhhhhhHHHHHHhhcccccccccceeccCCceeEecCCCCCCCccccCCC
Q 003496          553 IYEHSSGIMDGILFFDFTNCLKLNEKEAHKKILADSQQRIQHMASASLRLCYEMVHYTPYGLCNCFPGSEIPDWFSNQCS  632 (815)
Q Consensus       553 l~~~~~~~~~~~~~l~~~nC~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pg~~iP~Wf~~~~~  632 (815)
                        .......+....+.|.||++|++...              ++..   ..         ...+++||.++|+||.||+.
T Consensus       923 --~n~~~~~p~~~~l~f~nC~~L~~~a~--------------l~~~---~~---------~~~~~l~g~evp~~f~hr~~  974 (1153)
T PLN03210        923 --DNIHSKLPSTVCINFINCFNLDQEAL--------------LQQQ---SI---------FKQLILSGEEVPSYFTHRTT  974 (1153)
T ss_pred             --ccccccCCchhccccccccCCCchhh--------------hccc---cc---------ceEEECCCccCchhccCCcc
Confidence              00001122235578999999976211              0000   00         12357999999999999999


Q ss_pred             CcEEE-EEcCCCCCCCceeeEEEEEEEeecCccccCCCeeeeEEEEEecCcccc-cC--CccccccccccCCCCCCCCcE
Q 003496          633 GSSLT-IQLPRRSCGRNLVGFALCAVIQFEEDIDASGKYCNVKCNYNFETKTRL-EA--NNNVDDYYNLSLNGSMDSDHV  708 (815)
Q Consensus       633 g~s~~-i~lp~~~~~~~~~gf~~c~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~sdH~  708 (815)
                      |++++ |.+|+.|+...+.||++|+|+++...... ...+.++|.|+|++..+. ..  ...+.|.+      ....+|+
T Consensus       975 g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~-~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~------~~~~~~l 1047 (1153)
T PLN03210        975 GASLTNIPLLHISPCQPFFRFRACAVVDSESFFII-SVSFDIQVCCRFIDRLGNHFDSPYQPHVFSV------TKKGSHL 1047 (1153)
T ss_pred             cceeeeeccCCcccCCCccceEEEEEEecCccccC-CCceeEEEEEEEECCCCCccccCCCceeEee------eccccce
Confidence            99999 99999999888999999999998765332 236788999999874321 00  00011111      1234555


Q ss_pred             EEecccCCCCCCC---CCCCCceeeEEEEEEecCCCCccEEEeccCeeeecCCC
Q 003496          709 LLGFEPCWNTEVP---DDGNNQTTISFEFSVECKNEKCHQVKCCGVCPVYANPN  759 (815)
Q Consensus       709 ~~~~~~~~~~~~~---~~~~~~~~~~~~f~~~~~~~~~~~Vk~CGv~lvy~~~~  759 (815)
                      ++.-..+ .....   ....+++.++|+|.|...... ++||+|||+++|+.+.
T Consensus      1048 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~cg~~~~~~~~~ 1099 (1153)
T PLN03210       1048 VIFDCCF-PLNEDNAPLAELNYDHVDIQFRLTNKNSQ-LKLKGCGIRLSEDDSS 1099 (1153)
T ss_pred             EEecccc-cccccccchhccCCceeeEEEEEecCCCC-eEEEeeeEEEeccCCC
Confidence            5211111 10010   112356778899998775544 4999999999997754

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1e-38  Score=394.04  Aligned_cols=462  Identities=20%  Similarity=0.213  Sum_probs=347.1

Q ss_pred             HHHHHHHHhcccCCCCCcccccchh-HHHH---HHhhCccccceeEEEecCCCCcceeeccccccccCCceEEEEeCCCC
Q 003496           56 KMGREIVRQESVKEPGKRSRLWHYE-DVYH---VLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEY  131 (815)
Q Consensus        56 d~a~~i~~~e~~~~~~~~~~l~~~~-di~~---vl~~~~~~~~v~~i~l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l  131 (815)
                      |.+.-.+-++.+.+|+++.+.|+.. +.|.   |.+.+  ..+|+.+.+....+..  ..+.+|.++++|++|++++|.+
T Consensus        30 ~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~--~~~v~~L~L~~~~i~~--~~~~~~~~l~~L~~L~Ls~n~~  105 (968)
T PLN00113         30 ELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN--SSRVVSIDLSGKNISG--KISSAIFRLPYIQTINLSNNQL  105 (968)
T ss_pred             HHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC--CCcEEEEEecCCCccc--cCChHHhCCCCCCEEECCCCcc
Confidence            3333344445556788888899754 4442   33433  3468877777665532  2356899999999999999987


Q ss_pred             CCccccCcccccCCCCC-CCCcCcceEEeCCCCCCCCCCCCCCccceeeecCCCCccc-ccccccCCCCccEEecCCCCC
Q 003496          132 KGVPIMSSKVHLDQGLR-YLPEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQ-IWEGKKQAFKLKFIDLHHSQY  209 (815)
Q Consensus       132 ~~~~~~~~~~~l~~~l~-~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~-lp~~~~~l~~L~~L~L~~~~~  209 (815)
                      .|        .+|..+. .+ .+||+|++++|.+........+++|++|+|++|.+.. +|..++.+++|++|+|++|.+
T Consensus       106 ~~--------~ip~~~~~~l-~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l  176 (968)
T PLN00113        106 SG--------PIPDDIFTTS-SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL  176 (968)
T ss_pred             CC--------cCChHHhccC-CCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc
Confidence            53        6787766 45 4999999999988743333468899999999999874 788899999999999999988


Q ss_pred             CCcCC-CCCCCCCCcEEecCCCCCCCCcccccCCCCcccEEecCCCCCCcccCCccc-CCCCcEEEecCCCCCCccCCCc
Q 003496          210 LTKIP-DLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIY-FRSPIAVDFSDCVNLTEFPLVS  287 (815)
Q Consensus       210 ~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~-l~~L~~L~l~~~~~l~~l~~~~  287 (815)
                      ...+| .++++++|++|++++|.....+|..++++++|++|++++|.....+|..+. +++|+.|++++|.....+|..+
T Consensus       177 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  256 (968)
T PLN00113        177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL  256 (968)
T ss_pred             cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH
Confidence            77777 588899999999999888888899999999999999999888778887776 8999999999988777777654


Q ss_pred             ---ccceEEEecCcccc-ccchhhhccCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCE
Q 003496          288 ---GNIIELRLWNTRIE-EVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLE  363 (815)
Q Consensus       288 ---~~L~~L~l~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~  363 (815)
                         .+|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..+.++++|+.|++++|...+.+|..+..+++|+.
T Consensus       257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  336 (968)
T PLN00113        257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV  336 (968)
T ss_pred             hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCE
Confidence               45688889888886 67888888999999999998888888888888899999999988888888888888889999


Q ss_pred             EeccCCCcc-ccCchhccCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCC-CchhhhhcccceEEecCCCC
Q 003496          364 IDLRETAIR-NLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQL-PSSISDLNQLKKLKFSGCRG  441 (815)
Q Consensus       364 L~L~~~~l~-~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~  441 (815)
                      |++++|.+. .+|..++.+++|+.|++++|...+.+|..+..+++|+.|++++|.+.+. |..+..+++|+.|.+++|..
T Consensus       337 L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l  416 (968)
T PLN00113        337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF  416 (968)
T ss_pred             EECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEe
Confidence            999888887 6788888888888888888888777788777778888888887777644 77777777788887777764


Q ss_pred             c-cCCcccCCCCCCCEEEecCCCCcc-cCcccCCCCCCCeeeccCCcCc-cCchhhhccCCcceecccccccccCCCCc-
Q 003496          442 L-VLPPLLSGLSSLTELHLTDCNITE-IPADIGSLSSIVWLALSGNHFE-RLPTSVKQLSQLRYLHLSNCNMLQSLPEL-  517 (815)
Q Consensus       442 ~-~lp~~l~~l~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~l~~c~~L~~lp~l-  517 (815)
                      . .+|..+..+++|+.|++++|.++. +|..+..+++|+.|++++|.+. .+|.. ...++|+.|++++|+....+|.. 
T Consensus       417 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~l~~~~~~~~  495 (968)
T PLN00113        417 SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKL  495 (968)
T ss_pred             eeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc-cccccceEEECcCCccCCccChhh
Confidence            3 456666677777777777777665 4555556666666666666554 34432 23455566666665555555432 


Q ss_pred             --ccccceeccccccc
Q 003496          518 --PIYLVYLEAKNCKR  531 (815)
Q Consensus       518 --~~sL~~L~i~~C~~  531 (815)
                        .++|+.|++.+|.-
T Consensus       496 ~~l~~L~~L~Ls~N~l  511 (968)
T PLN00113        496 GSLSELMQLKLSENKL  511 (968)
T ss_pred             hhhhccCEEECcCCcc
Confidence              23455555555533

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.1e-37  Score=384.98  Aligned_cols=441  Identities=23%  Similarity=0.304  Sum_probs=230.4

Q ss_pred             ceeEEEecCCCCcceeeccccccccCCceEEEEeCCCCCCcccc--------------CcccccCCCCCCCCcCcceEEe
Q 003496           94 AIEGILLNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIM--------------SSKVHLDQGLRYLPEELRYLHW  159 (815)
Q Consensus        94 ~v~~i~l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~--------------~~~~~l~~~l~~l~~~Lr~L~l  159 (815)
                      .++.+.+..+.+ ...+....|.++++||+|++++|.+.+....              .....+|..+..++ +||+|++
T Consensus        94 ~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~-~L~~L~L  171 (968)
T PLN00113         94 YIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFS-SLKVLDL  171 (968)
T ss_pred             CCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCC-CCCEEEC
Confidence            444444443333 1234444555666666666666655421000              00113444444444 5555555


Q ss_pred             CCCCCC-CCCCCC-CCccceeeecCCCCccc-ccccccCCCCccEEecCCCCCCCcCC-CCCCCCCCcEEecCCCCCCCC
Q 003496          160 HQYSLK-TLPLNF-DPENLIELNLPYSNVEQ-IWEGKKQAFKLKFIDLHHSQYLTKIP-DLVETPNLERINLLNCTNLPY  235 (815)
Q Consensus       160 ~~~~l~-~lp~~~-~l~~L~~L~L~~~~i~~-lp~~~~~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~~~~~  235 (815)
                      ++|.+. .+|..+ ++++|++|+|++|.+.. +|..+.++++|++|+|++|.+...+| .++.+++|++|++++|...+.
T Consensus       172 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  251 (968)
T PLN00113        172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP  251 (968)
T ss_pred             ccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc
Confidence            555543 445544 55555555555555543 45555555555555555555554444 355555555555555555555


Q ss_pred             cccccCCCCcccEEecCCCCCCcccCCccc-CCCCcEEEecCCCCCCccCCCc---ccceEEEecCcccc-ccchhhhcc
Q 003496          236 ISSSIQNFNNLSVLSLAGCRSLVSFPRNIY-FRSPIAVDFSDCVNLTEFPLVS---GNIIELRLWNTRIE-EVPSSIECL  310 (815)
Q Consensus       236 ~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~-l~~L~~L~l~~~~~l~~l~~~~---~~L~~L~l~~~~i~-~lp~~l~~l  310 (815)
                      +|..++++++|++|++++|.....+|..+. +++|+.|++++|.....+|..+   .+++.|++++|.+. .+|..+..+
T Consensus       252 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l  331 (968)
T PLN00113        252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL  331 (968)
T ss_pred             cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC
Confidence            555555555555555555554444554444 5555556655555444444322   34455555555554 445555555


Q ss_pred             CCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCcc-ccCchhccCCCCcEEec
Q 003496          311 TNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIR-NLPSSIEYLEGLRKLDL  389 (815)
Q Consensus       311 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~L  389 (815)
                      ++|+.|++++|.+.+.+|..++.+++|+.|++++|...+.+|..+..+++|+.|++.+|.+. .+|..+..+++|+.|++
T Consensus       332 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L  411 (968)
T PLN00113        332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRL  411 (968)
T ss_pred             CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEEC
Confidence            55555555555555555555555555555555555555555555555555555555555444 44555555666666666


Q ss_pred             CCCCCCCccchhhhccccccccccccccCCCC-CchhhhhcccceEEecCCCCc------------------------cC
Q 003496          390 GDCSELASLPEKLENLKSLKYLNAEFSAIGQL-PSSISDLNQLKKLKFSGCRGL------------------------VL  444 (815)
Q Consensus       390 ~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~------------------------~l  444 (815)
                      ++|...+.+|..+..+++|+.|++++|.+.+. |..+..+++|+.|++++|...                        ..
T Consensus       412 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~  491 (968)
T PLN00113        412 QDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAV  491 (968)
T ss_pred             cCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCcc
Confidence            66665555666666666666666666655544 344444555555555544432                        23


Q ss_pred             CcccCCCCCCCEEEecCCCCcc-cCcccCCCCCCCeeeccCCcCc-cCchhhhccCCcceecccccccccCCCCc---cc
Q 003496          445 PPLLSGLSSLTELHLTDCNITE-IPADIGSLSSIVWLALSGNHFE-RLPTSVKQLSQLRYLHLSNCNMLQSLPEL---PI  519 (815)
Q Consensus       445 p~~l~~l~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~l~~c~~L~~lp~l---~~  519 (815)
                      |..+..+++|+.|+|++|.+.. +|..+..+++|++|+|++|.++ .+|..+..+++|+.|++++|+....+|..   ..
T Consensus       492 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  571 (968)
T PLN00113        492 PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE  571 (968)
T ss_pred             ChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCc
Confidence            3344445555555555555543 4445555555555555555554 44555555555555555555555555532   23


Q ss_pred             ccceeccccccccCCCC
Q 003496          520 YLVYLEAKNCKRLQTLP  536 (815)
Q Consensus       520 sL~~L~i~~C~~L~~l~  536 (815)
                      +|+.|++++|+-...+|
T Consensus       572 ~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        572 SLVQVNISHNHLHGSLP  588 (968)
T ss_pred             ccCEEeccCCcceeeCC
Confidence            34555555554443333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1.3e-31  Score=281.74  Aligned_cols=368  Identities=20%  Similarity=0.322  Sum_probs=303.0

Q ss_pred             cCCceEEEEeCCCCCCccccCcccccCCCCCCCCcCcceEEeCCCCCCCCCCCC-CCccceeeecCCCCcccccccccCC
Q 003496          118 MSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNF-DPENLIELNLPYSNVEQIWEGKKQA  196 (815)
Q Consensus       118 ~~~Lr~L~l~~~~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~lp~~~~~l  196 (815)
                      ++-.|-.++++|.++|       ..+|.++..+. .+++|.+....+..+|... .+.+|++|.+++|++..+-..+..|
T Consensus         6 LpFVrGvDfsgNDFsg-------~~FP~~v~qMt-~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~L   77 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSG-------DRFPHDVEQMT-QMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDL   77 (1255)
T ss_pred             cceeecccccCCcCCC-------CcCchhHHHhh-heeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccc
Confidence            3445666777787764       57888888876 8888888888888888888 8888888999999888888888888


Q ss_pred             CCccEEecCCCCCCCc-CC-CCCCCCCCcEEecCCCCCCCCcccccCCCCcccEEecCCCCCCcccCCcccCCCCcEEEe
Q 003496          197 FKLKFIDLHHSQYLTK-IP-DLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDF  274 (815)
Q Consensus       197 ~~L~~L~L~~~~~~~~-~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l  274 (815)
                      +.||.+++..|.+... +| ++.++..|..|+|++|. +.++|..+.+.+++-.|+|++|+ +..+|..+.         
T Consensus        78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lf---------  146 (1255)
T KOG0444|consen   78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLF---------  146 (1255)
T ss_pred             hhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHH---------
Confidence            8899888888876533 45 78888888888888865 67788888888888888888754 455554432         


Q ss_pred             cCCCCCCccCCCcccceEEEecCccccccchhhhccCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcC-CCCccH
Q 003496          275 SDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSN-LETFPE  353 (815)
Q Consensus       275 ~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~-~~~~p~  353 (815)
                                .....|-.|+|++|++..+|..+..+.+|++|+|++|.+...--..+..+++|++|.+++.+. +..+|.
T Consensus       147 ----------inLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt  216 (1255)
T KOG0444|consen  147 ----------INLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT  216 (1255)
T ss_pred             ----------HhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC
Confidence                      011233456677788888999999999999999999986544333444678888999988655 467899


Q ss_pred             HHhccccCCEEeccCCCccccCchhccCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCCCchhhhhcccce
Q 003496          354 ILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKK  433 (815)
Q Consensus       354 ~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~  433 (815)
                      .+..+.+|..++++.|.+..+|..+..+++|+.|+|++|... .+........+|+.|+++.|.++.+|+.+-.++.|+.
T Consensus       217 sld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~k  295 (1255)
T KOG0444|consen  217 SLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTK  295 (1255)
T ss_pred             chhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHH
Confidence            999999999999999999999999999999999999998754 4444566778899999999999999999999999999


Q ss_pred             EEecCCCC--ccCCcccCCCCCCCEEEecCCCCcccCcccCCCCCCCeeeccCCcCccCchhhhccCCcceecccccccc
Q 003496          434 LKFSGCRG--LVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNML  511 (815)
Q Consensus       434 L~l~~~~~--~~lp~~l~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~~L  511 (815)
                      |...+|..  .-+|+.++.+..|+.+..++|.+.-+|+++..+..|+.|.|+.|.+.++|+.|+-++-|+.||+..|+.|
T Consensus       296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  296 LYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             HHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCc
Confidence            99988873  4689999999999999999999988999999999999999999999999999999999999999999998


Q ss_pred             cCCC
Q 003496          512 QSLP  515 (815)
Q Consensus       512 ~~lp  515 (815)
                      .--|
T Consensus       376 VMPP  379 (1255)
T KOG0444|consen  376 VMPP  379 (1255)
T ss_pred             cCCC
Confidence            7544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1.6e-31  Score=281.20  Aligned_cols=361  Identities=27%  Similarity=0.349  Sum_probs=316.6

Q ss_pred             CcceEEeCCCCCC--CCCCCC-CCccceeeecCCCCcccccccccCCCCccEEecCCCCCCCcCCCCCCCCCCcEEecCC
Q 003496          153 ELRYLHWHQYSLK--TLPLNF-DPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLN  229 (815)
Q Consensus       153 ~Lr~L~l~~~~l~--~lp~~~-~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~  229 (815)
                      -.|-.++++|.++  .+|.+. .+++++.|.|..+++..+|+.++.+.+|++|.+++|++.+....++.++.||.+.+..
T Consensus         8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~   87 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRD   87 (1255)
T ss_pred             eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhc
Confidence            7788899999887  899999 9999999999999999999999999999999999999877777899999999999988


Q ss_pred             CCCC-CCcccccCCCCcccEEecCCCCCCcccCCcccCCCCcEEEecCCCCCCccCCCcccceEEEecCccccccchh-h
Q 003496          230 CTNL-PYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSS-I  307 (815)
Q Consensus       230 ~~~~-~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~-l  307 (815)
                      |..- .-+|..|..+..|..|+|+.|+ ++..|.++.                    .-.++..|.|++|.|..+|.. +
T Consensus        88 N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE--------------------~AKn~iVLNLS~N~IetIPn~lf  146 (1255)
T KOG0444|consen   88 NNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLE--------------------YAKNSIVLNLSYNNIETIPNSLF  146 (1255)
T ss_pred             cccccCCCCchhcccccceeeecchhh-hhhcchhhh--------------------hhcCcEEEEcccCccccCCchHH
Confidence            7543 5688899999999999999865 455554432                    223557788888899999987 4


Q ss_pred             hccCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCcc--ccCchhccCCCCc
Q 003496          308 ECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIR--NLPSSIEYLEGLR  385 (815)
Q Consensus       308 ~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~--~lp~~l~~l~~L~  385 (815)
                      .+++.|-.|||++|. +..+|+.+..|.+|++|.|++|+....--..+..|++|++|.+++++-+  .+|.++..+.+|.
T Consensus       147 inLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~  225 (1255)
T KOG0444|consen  147 INLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLR  225 (1255)
T ss_pred             HhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhh
Confidence            789999999999876 5788999999999999999999875433344556889999999998655  8999999999999


Q ss_pred             EEecCCCCCCCccchhhhccccccccccccccCCCCCchhhhhcccceEEecCCCCccCCcccCCCCCCCEEEecCCCCc
Q 003496          386 KLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNIT  465 (815)
Q Consensus       386 ~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~~~l~  465 (815)
                      .++++.| .+..+|+.+.++++|+.|++++|.++++....+...+|+.|+++.|+...+|..+..++.|+.|.+.+|+++
T Consensus       226 dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~  304 (1255)
T KOG0444|consen  226 DVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLT  304 (1255)
T ss_pred             hcccccc-CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccc
Confidence            9999876 467889999999999999999999999988888899999999999999999999999999999999999887


Q ss_pred             c--cCcccCCCCCCCeeeccCCcCccCchhhhccCCcceecccccccccCCCC---cccccceeccccccccCCCCC
Q 003496          466 E--IPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPE---LPIYLVYLEAKNCKRLQTLPE  537 (815)
Q Consensus       466 ~--lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~~L~~lp~---l~~sL~~L~i~~C~~L~~l~~  537 (815)
                      -  +|+.++.+..|+.+..++|.+.-+|+++..+.+|+.|.+++|+ |..+|+   +.+-|+.|++.+.|+|..-|.
T Consensus       305 FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  305 FEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             ccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCccCCCC
Confidence            4  9999999999999999999999999999999999999999876 667887   457788999999999877664

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.95  E-value=2.4e-31  Score=267.40  Aligned_cols=383  Identities=19%  Similarity=0.275  Sum_probs=268.7

Q ss_pred             ccccccCCceEEEEeCCCCCCccccCcccccCCCCCCCCcCcceEEeCCCCCCCCCCCC-CCccceeeecCCCCcccccc
Q 003496          113 NVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNF-DPENLIELNLPYSNVEQIWE  191 (815)
Q Consensus       113 ~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~lp~  191 (815)
                      .+.+++..++.|+.+.|++         ..+|..+..++ .|+.|+.+.+.++.+|+++ .+..|..|+..+|++..+|+
T Consensus        85 ~aig~l~~l~~l~vs~n~l---------s~lp~~i~s~~-~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~  154 (565)
T KOG0472|consen   85 AAIGELEALKSLNVSHNKL---------SELPEQIGSLI-SLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPE  154 (565)
T ss_pred             HHHHHHHHHHHhhcccchH---------hhccHHHhhhh-hhhhhhccccceeecCchHHHHhhhhhhhccccccccCch
Confidence            3556666666677766654         37888888887 8999999999999998888 88899999999999999999


Q ss_pred             cccCCCCccEEecCCCCCCCcCCCCCCCCCCcEEecCCCCCCCCcccccCCCCcccEEecCCCCCCcccCCcccCCCCcE
Q 003496          192 GKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIA  271 (815)
Q Consensus       192 ~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~  271 (815)
                      ++..+.+|..+++.+|......|+.-.++.|++|+...| .++.+|+.++.+.+|..|++..|. +..+|+.-++..|.+
T Consensus       155 ~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPef~gcs~L~E  232 (565)
T KOG0472|consen  155 DMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNK-IRFLPEFPGCSLLKE  232 (565)
T ss_pred             HHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcc-cccCCCCCccHHHHH
Confidence            999999999999999987777777666889999998774 468899999999999999998865 667786556888888


Q ss_pred             EEecCCCCCCccCC----CcccceEEEecCccccccchhhhccCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcC
Q 003496          272 VDFSDCVNLTEFPL----VSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSN  347 (815)
Q Consensus       272 L~l~~~~~l~~l~~----~~~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~  347 (815)
                      ++++.+. ++.+|.    ....+..|++.+|.++++|..+.-+.+|.+||+++|.+ ..+|.+++++ +|+.|-+.||+.
T Consensus       233 lh~g~N~-i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  233 LHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI-SSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             HHhcccH-HHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc-ccCCcccccc-eeeehhhcCCch
Confidence            8887765 333433    34567899999999999999999999999999998764 4678889988 899998887643


Q ss_pred             CC-------------------------------------Ccc----HHHhccccCCEEeccCCCccccCchhccCCC---
Q 003496          348 LE-------------------------------------TFP----EILEKMEHLLEIDLRETAIRNLPSSIEYLEG---  383 (815)
Q Consensus       348 ~~-------------------------------------~~p----~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~---  383 (815)
                      -+                                     ..|    .....+.+.+.|++++-.++.+|.....-..   
T Consensus       310 rTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~  389 (565)
T KOG0472|consen  310 RTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEI  389 (565)
T ss_pred             HHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcc
Confidence            10                                     000    0122344556666666666655544322221   


Q ss_pred             CcEEecCCC-----------------------CCCCccchhhhccccccccccccccCCCCCchhhhhcccceEEecCCC
Q 003496          384 LRKLDLGDC-----------------------SELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCR  440 (815)
Q Consensus       384 L~~L~L~~~-----------------------~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~  440 (815)
                      ....+++.|                       +...-.|..++.+++|..|++++|.+..+|..++.+..|+.|+++.|+
T Consensus       390 Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr  469 (565)
T KOG0472|consen  390 VTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNR  469 (565)
T ss_pred             eEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccc
Confidence            444455444                       333444445555555666666666555555555555556666666555


Q ss_pred             CccCCcccCCCCCCCEEEecCCCCcccCcc-cCCCCCCCeeeccCCcCccCchhhhccCCcceeccccccc
Q 003496          441 GLVLPPLLSGLSSLTELHLTDCNITEIPAD-IGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNM  510 (815)
Q Consensus       441 ~~~lp~~l~~l~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~~  510 (815)
                      ...+|..+-.+..|+.+-.+++++..+++. +.++..|..|||.+|.+..+|..++++++|++|++++|+.
T Consensus       470 Fr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  470 FRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             cccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence            555555555555555555555566555443 6667777777777777777777777777777777777664

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.94  E-value=2.5e-27  Score=248.60  Aligned_cols=335  Identities=20%  Similarity=0.200  Sum_probs=159.6

Q ss_pred             eEEEEeCCCCCCccccCcccccCCCCCCCCcCcceEEeCCCCCCCCCCCC-CCccceeeecCCCCccccc-ccccCCCCc
Q 003496          122 RFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNF-DPENLIELNLPYSNVEQIW-EGKKQAFKL  199 (815)
Q Consensus       122 r~L~l~~~~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~lp-~~~~~l~~L  199 (815)
                      ++|++++|.+..        .-+..+.++| +|+.+.+..|.++.+|... ...+|+.|+|.+|.|..+- +.++.++.|
T Consensus        81 ~~LdlsnNkl~~--------id~~~f~nl~-nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~al  151 (873)
T KOG4194|consen   81 QTLDLSNNKLSH--------IDFEFFYNLP-NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPAL  151 (873)
T ss_pred             eeeecccccccc--------CcHHHHhcCC-cceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhh
Confidence            346666665531        1123344554 6666666666666666655 4444666666666666653 345666666


Q ss_pred             cEEecCCCCCCCc-CCCCCCCCCCcEEecCCCCCCCCcccccCCCCcccEEecCCCCCCcccCCc-cc-CCCCcEEEecC
Q 003496          200 KFIDLHHSQYLTK-IPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRN-IY-FRSPIAVDFSD  276 (815)
Q Consensus       200 ~~L~L~~~~~~~~-~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~-~~-l~~L~~L~l~~  276 (815)
                      |.|||+.|.+... .|.|..-.++++|+|++|.++..--..+..+.+|..|.|+.|.. ..+|.. +. +++|+.|+|..
T Consensus       152 rslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri-ttLp~r~Fk~L~~L~~LdLnr  230 (873)
T KOG4194|consen  152 RSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI-TTLPQRSFKRLPKLESLDLNR  230 (873)
T ss_pred             hhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc-cccCHHHhhhcchhhhhhccc
Confidence            6666666654322 12455556666666666655544445555666666666666543 333332 22 55555555555


Q ss_pred             CCCCCc---cCCCcccceEEEecCccccccchh-hhccCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCcc
Q 003496          277 CVNLTE---FPLVSGNIIELRLWNTRIEEVPSS-IECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFP  352 (815)
Q Consensus       277 ~~~l~~---l~~~~~~L~~L~l~~~~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p  352 (815)
                      |..-..   -.....+|+.|.+..|.|..+..+ +-.+.++++|+|..|+....--.++.+|+.|+.|+++.|.....-+
T Consensus       231 N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~  310 (873)
T KOG4194|consen  231 NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI  310 (873)
T ss_pred             cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence            432111   011223344444444444444332 2334444444444444443333344444444444444444444444


Q ss_pred             HHHhccccCCEEeccCCCccccC-chhccCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCC----Cchhhh
Q 003496          353 EILEKMEHLLEIDLRETAIRNLP-SSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQL----PSSISD  427 (815)
Q Consensus       353 ~~l~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~----p~~l~~  427 (815)
                      +...-.++|+.|+|+.|.+++++ .++..+..|++|+|+.|.....--..|..+++|+.|+++.|.+...    ...+..
T Consensus       311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g  390 (873)
T KOG4194|consen  311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG  390 (873)
T ss_pred             chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc
Confidence            44444444444444444444443 2334444444444444443333333344444444444444443221    122333


Q ss_pred             hcccceEEecCCCCccCCc-ccCCCCCCCEEEecCCCCcc
Q 003496          428 LNQLKKLKFSGCRGLVLPP-LLSGLSSLTELHLTDCNITE  466 (815)
Q Consensus       428 l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~Ls~~~l~~  466 (815)
                      +++|+.|.+.+|+...+|. .+.+++.|++|+|.+|.+..
T Consensus       391 l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS  430 (873)
T KOG4194|consen  391 LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS  430 (873)
T ss_pred             chhhhheeecCceeeecchhhhccCcccceecCCCCccee
Confidence            4444444444444333332 23344444444444444433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.94  E-value=8e-30  Score=256.43  Aligned_cols=370  Identities=24%  Similarity=0.317  Sum_probs=214.9

Q ss_pred             cccccCCceEEEEeCCCCCCccccCcccccCCCCCCCCcCcceEEeCCCCCCCCCCCC-CCccceeeecCCCCccccccc
Q 003496          114 VFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNF-DPENLIELNLPYSNVEQIWEG  192 (815)
Q Consensus       114 ~f~~~~~Lr~L~l~~~~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~lp~~  192 (815)
                      ...++..|.+|.+++|.+         ..+|..+..+. .+..|+.+.+.+..+|..+ .+.+|+.|+.++|.+..+|++
T Consensus        63 dl~nL~~l~vl~~~~n~l---------~~lp~aig~l~-~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~  132 (565)
T KOG0472|consen   63 DLKNLACLTVLNVHDNKL---------SQLPAAIGELE-ALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDS  132 (565)
T ss_pred             hhhcccceeEEEeccchh---------hhCCHHHHHHH-HHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCch
Confidence            445555556666655544         25555555554 5555666666666666555 556666666666666666666


Q ss_pred             ccCCCCccEEecCCCCCCCcCCCCCCCCCCcEEecCCCCCCCCcccccCCCCcccEEecCCCCCCcccCCccc-CCCCcE
Q 003496          193 KKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIY-FRSPIA  271 (815)
Q Consensus       193 ~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~-l~~L~~  271 (815)
                      ++.+..|..++..+|++.+..++++.+.+|..|++.++.. .+.|+..-+++.|++|+... ..++.+|+.++ +.+|+.
T Consensus       133 i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~  210 (565)
T KOG0472|consen  133 IGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLEL  210 (565)
T ss_pred             HHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccch-hhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHH
Confidence            6666666666666666555555566666666666665443 33333333466666666544 23566666666 667777


Q ss_pred             EEecCCCCCCccCCCcc--cceEEEecCccccccchhhh-ccCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCC
Q 003496          272 VDFSDCVNLTEFPLVSG--NIIELRLWNTRIEEVPSSIE-CLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNL  348 (815)
Q Consensus       272 L~l~~~~~l~~l~~~~~--~L~~L~l~~~~i~~lp~~l~-~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~  348 (815)
                      |++..+. +..+|++.+  .++++++..|.++.+|+... ++++|..||+++|+ ++..|..++.+++|++|++++|.. 
T Consensus       211 LyL~~Nk-i~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~i-  287 (565)
T KOG0472|consen  211 LYLRRNK-IRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNNDI-  287 (565)
T ss_pred             HHhhhcc-cccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCcc-
Confidence            7766654 334444333  34677777777777777654 67777777777765 456677777777777777776543 


Q ss_pred             CCccHHHhccccCCEEeccCCCccccCchh------------------------------------------ccCCCCcE
Q 003496          349 ETFPEILEKMEHLLEIDLRETAIRNLPSSI------------------------------------------EYLEGLRK  386 (815)
Q Consensus       349 ~~~p~~l~~l~~L~~L~L~~~~l~~lp~~l------------------------------------------~~l~~L~~  386 (815)
                      ..+|..++++ .|+.|.+.||.+..+-..+                                          ....+.+.
T Consensus       288 s~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tki  366 (565)
T KOG0472|consen  288 SSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKI  366 (565)
T ss_pred             ccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhh
Confidence            4466667777 7777777776654221111                                          01112333


Q ss_pred             EecCCCCCCCccchhhhcccc---ccccccccccCCCCCchhhhhcccc-eEEecCCCCccCCcccCCCCCCCEEEecCC
Q 003496          387 LDLGDCSELASLPEKLENLKS---LKYLNAEFSAIGQLPSSISDLNQLK-KLKFSGCRGLVLPPLLSGLSSLTELHLTDC  462 (815)
Q Consensus       387 L~L~~~~~~~~l~~~l~~l~~---L~~L~l~~~~~~~~p~~l~~l~~L~-~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~~  462 (815)
                      |.+++-+ ...+|...+.-..   ....+++.|.+.++|..+..+..+. .+.++++...-+|..+..+++|+.|++++|
T Consensus       367 L~~s~~q-lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN  445 (565)
T KOG0472|consen  367 LDVSDKQ-LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN  445 (565)
T ss_pred             hcccccc-cccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc
Confidence            3333321 2233333222221   3445555566666665555554433 344455555555666777777777777777


Q ss_pred             CCcccCcccCCCCCCCeeeccCCcCccCchhhhccCCc
Q 003496          463 NITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQL  500 (815)
Q Consensus       463 ~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L  500 (815)
                      -+.++|..++.+..|+.|+++.|.|..+|..+..+..|
T Consensus       446 ~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~l  483 (565)
T KOG0472|consen  446 LLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTL  483 (565)
T ss_pred             hhhhcchhhhhhhhhheecccccccccchHHHhhHHHH
Confidence            77777777777777777777777776666544333333

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.94  E-value=2e-27  Score=249.39  Aligned_cols=380  Identities=22%  Similarity=0.246  Sum_probs=306.1

Q ss_pred             CceEEEEeCCCCCCccccCcccccCCCCCCCCcCcceEEeCCCCCCCCCCCC--CCccceeeecCCCCcccccccccCCC
Q 003496          120 NLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNF--DPENLIELNLPYSNVEQIWEGKKQAF  197 (815)
Q Consensus       120 ~Lr~L~l~~~~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~lp~~~~~l~  197 (815)
                      +-+.|+.+++.+...    +...++   ..+|..-+.|++++|.+..+...+  ++++|+.++|.+|.++.+|.......
T Consensus        53 ~~~lldcs~~~lea~----~~~~l~---g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sg  125 (873)
T KOG4194|consen   53 NTRLLDCSDRELEAI----DKSRLK---GFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESG  125 (873)
T ss_pred             CceeeecCccccccc----cccccC---CcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhccccccccc
Confidence            345667766655321    111222   234557889999999999776553  99999999999999999999999999


Q ss_pred             CccEEecCCCCCCCcCC-CCCCCCCCcEEecCCCCCCCCcccccCCCCcccEEecCCCCCCcccCCccc-CCCCcEEEec
Q 003496          198 KLKFIDLHHSQYLTKIP-DLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIY-FRSPIAVDFS  275 (815)
Q Consensus       198 ~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~-l~~L~~L~l~  275 (815)
                      +|+.|+|.+|.+.+.-. .+.-++.||.|+|+.|.....--.++..-.++++|+|++|....--...+. +.+|.+|.|+
T Consensus       126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs  205 (873)
T KOG4194|consen  126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS  205 (873)
T ss_pred             ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence            99999999998665544 578899999999999765443335666678999999999875443223333 7899999999


Q ss_pred             CCCCCCccCCC---cccceEEEecCcccccc-chhhhccCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCc
Q 003496          276 DCVNLTEFPLV---SGNIIELRLWNTRIEEV-PSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETF  351 (815)
Q Consensus       276 ~~~~l~~l~~~---~~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~  351 (815)
                      .|....--+..   .+.|+.|+|..|.|..+ -..+..++.|+.|.|..|.+..--...|..+.++++|+|..|+....-
T Consensus       206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn  285 (873)
T KOG4194|consen  206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN  285 (873)
T ss_pred             cCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh
Confidence            98755433333   34668899999999876 456889999999999999887776777889999999999999887777


Q ss_pred             cHHHhccccCCEEeccCCCccccC-chhccCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCC-Cchhhhhc
Q 003496          352 PEILEKMEHLLEIDLRETAIRNLP-SSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQL-PSSISDLN  429 (815)
Q Consensus       352 p~~l~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~-p~~l~~l~  429 (815)
                      ..++.+++.|+.|+++.|.|..+. .+....++|+.|+|+.|....--+..+..|..|+.|+++.|++..+ ...+..++
T Consensus       286 ~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls  365 (873)
T KOG4194|consen  286 EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS  365 (873)
T ss_pred             cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh
Confidence            778899999999999999999774 5677889999999999998888888899999999999999999998 57788999


Q ss_pred             ccceEEecCCCCcc----CCcccCCCCCCCEEEecCCCCcccC-cccCCCCCCCeeeccCCcCccC-chhhhccCCccee
Q 003496          430 QLKKLKFSGCRGLV----LPPLLSGLSSLTELHLTDCNITEIP-ADIGSLSSIVWLALSGNHFERL-PTSVKQLSQLRYL  503 (815)
Q Consensus       430 ~L~~L~l~~~~~~~----lp~~l~~l~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L  503 (815)
                      +|+.|++++|....    -...+.++++|++|.+.+|++..+| ..+..++.|+.|+|.+|.+.++ |..+..+ .|++|
T Consensus       366 sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~L  444 (873)
T KOG4194|consen  366 SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKEL  444 (873)
T ss_pred             hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhh
Confidence            99999999988432    2234778999999999999999988 5689999999999999999866 4455555 88888


Q ss_pred             cccc
Q 003496          504 HLSN  507 (815)
Q Consensus       504 ~l~~  507 (815)
                      .+..
T Consensus       445 v~nS  448 (873)
T KOG4194|consen  445 VMNS  448 (873)
T ss_pred             hhcc
Confidence            7654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.92  E-value=8.3e-28  Score=265.51  Aligned_cols=380  Identities=21%  Similarity=0.229  Sum_probs=241.2

Q ss_pred             cccccCCceEEEEeCCCCCCccccCcccccCCCCCCCCcCcceEEeCCCCCCCCCCCC-CCccceeeecCCCCccccccc
Q 003496          114 VFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNF-DPENLIELNLPYSNVEQIWEG  192 (815)
Q Consensus       114 ~f~~~~~Lr~L~l~~~~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~lp~~  192 (815)
                      +..+.-+|+.|++++|.+.         .+|..+..++ +|+.|.++.|.+.++|.+. ++.+|++|+|.+|.+..+|.+
T Consensus        40 ~~~~~v~L~~l~lsnn~~~---------~fp~~it~l~-~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~  109 (1081)
T KOG0618|consen   40 FVEKRVKLKSLDLSNNQIS---------SFPIQITLLS-HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPAS  109 (1081)
T ss_pred             HhhheeeeEEeeccccccc---------cCCchhhhHH-HHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchh
Confidence            3344555999999988764         7888888887 9999999999999999877 899999999999999999999


Q ss_pred             ccCCCCccEEecCCCCCCCcCCCCCCCCCCcEEecCC-------------------CCCCCCcccccCCCCcccEEecCC
Q 003496          193 KKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLN-------------------CTNLPYISSSIQNFNNLSVLSLAG  253 (815)
Q Consensus       193 ~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~-------------------~~~~~~~~~~l~~l~~L~~L~l~~  253 (815)
                      +..+++|++|++++|.+....+-+..+..++.+..++                   +.....++..+.+++.  .|++++
T Consensus       110 ~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~  187 (1081)
T KOG0618|consen  110 ISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRY  187 (1081)
T ss_pred             HHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeeccc
Confidence            9999999999999998765544444444444444444                   4444445555555555  466666


Q ss_pred             CCCC----------cccCC--------cccCCCCcEEEecCCCCCCccCC-CcccceEEEecCccccccchhhhccCCCC
Q 003496          254 CRSL----------VSFPR--------NIYFRSPIAVDFSDCVNLTEFPL-VSGNIIELRLWNTRIEEVPSSIECLTNLE  314 (815)
Q Consensus       254 ~~~l----------~~lp~--------~~~l~~L~~L~l~~~~~l~~l~~-~~~~L~~L~l~~~~i~~lp~~l~~l~~L~  314 (815)
                      |...          +.+-.        .+..++|+.|+...|......+. ...++++++++.+.+..+|++++.+.+|+
T Consensus       188 N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle  267 (1081)
T KOG0618|consen  188 NEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLE  267 (1081)
T ss_pred             chhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccce
Confidence            5543          11110        01145666677777766644433 34577999999999999999999999999


Q ss_pred             EEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCccccCchhccC-C-CCcEEecCCC
Q 003496          315 TLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYL-E-GLRKLDLGDC  392 (815)
Q Consensus       315 ~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~~lp~~l~~l-~-~L~~L~L~~~  392 (815)
                      .|+..+|.+ ..+|..+....+|+.|.+..| .++.+|...++++.|++|+|..|.+..+|..+..- . +|..|+.+.+
T Consensus       268 ~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n  345 (1081)
T KOG0618|consen  268 ALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSN  345 (1081)
T ss_pred             EecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhc
Confidence            999998877 677878888888888888875 45667777888889999999999888887643211 1 1333333322


Q ss_pred             CCCCccc-hhhhccccccccccccccCCCC-CchhhhhcccceEEecCCCCccCCc-ccCCCCCCCEEEecCCCCcccCc
Q 003496          393 SELASLP-EKLENLKSLKYLNAEFSAIGQL-PSSISDLNQLKKLKFSGCRGLVLPP-LLSGLSSLTELHLTDCNITEIPA  469 (815)
Q Consensus       393 ~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~Ls~~~l~~lp~  469 (815)
                      +. ..+| ..-...+.|+.|.+.+|.++.- -..+.++.+|+.|++++|+...+|. .+.++..|++|+||+|+++.+|.
T Consensus       346 ~l-~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~  424 (1081)
T KOG0618|consen  346 KL-STLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPD  424 (1081)
T ss_pred             cc-cccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhH
Confidence            21 1111 1112233444444444444433 2334444445555555554444443 23444455555555555555554


Q ss_pred             ccCCCCCCCeeeccCCcCccCchhhhccCCcceecccccc
Q 003496          470 DIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCN  509 (815)
Q Consensus       470 ~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~  509 (815)
                      .+..++.|++|...+|++..+| .+..++.|+.+|++.|.
T Consensus       425 tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~  463 (1081)
T KOG0618|consen  425 TVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNN  463 (1081)
T ss_pred             HHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccch
Confidence            4555555555555555555555 44445555555555443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.92  E-value=2.3e-25  Score=261.02  Aligned_cols=399  Identities=24%  Similarity=0.241  Sum_probs=229.5

Q ss_pred             EeEEeeecCCC--ChhHHHHhhcCCCc--h-----------hhcHHhhhcCccEEEccC----CeEEecHHHHHHHHHHH
Q 003496            2 FLDIACFLKGE--DKDYVTKIQDDPNF--A-----------HYCLSVLVDKSLVTISCN----NKVQMHDLLQKMGREIV   62 (815)
Q Consensus         2 Fl~~a~F~~~~--~~~~l~~lw~a~gf--~-----------~~~i~~L~~rsli~~~~~----~~~~MHDLl~d~a~~i~   62 (815)
                      |||||.||+||  +++.++.+|+|+||  +           ..++.+|++++|++..++    .+|+|||++||||.+++
T Consensus       416 FLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ia  495 (889)
T KOG4658|consen  416 FLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIA  495 (889)
T ss_pred             HHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHh
Confidence            99999999999  89999999999998  3           234899999999998742    57999999999999999


Q ss_pred             HhcccCCCCCcccccchhHHHHHHhhCccccceeEEEecCCCCcceeeccccccccCCceEEEEeCCCCCCccccCcccc
Q 003496           63 RQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVH  142 (815)
Q Consensus        63 ~~e~~~~~~~~~~l~~~~di~~vl~~~~~~~~v~~i~l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~~  142 (815)
                      ++......                       +  .+.-+....                                   ..
T Consensus       496 s~~~~~~e-----------------------~--~iv~~~~~~-----------------------------------~~  515 (889)
T KOG4658|consen  496 SDFGKQEE-----------------------N--QIVSDGVGL-----------------------------------SE  515 (889)
T ss_pred             cccccccc-----------------------c--eEEECCcCc-----------------------------------cc
Confidence            85432110                       0  000000000                                   01


Q ss_pred             cCCCCCCCCcCcceEEeCCCCCCCCCCCCCCccceeeecCCCC--cccccc-cccCCCCccEEecCCCCCCCcCC-CCCC
Q 003496          143 LDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSN--VEQIWE-GKKQAFKLKFIDLHHSQYLTKIP-DLVE  218 (815)
Q Consensus       143 l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~--i~~lp~-~~~~l~~L~~L~L~~~~~~~~~p-~l~~  218 (815)
                      .|+.. +. ...|...+.++.+..++.....++|+.|=+..|.  +..++. .+..++.|++|||++|.....+| .++.
T Consensus       516 ~~~~~-~~-~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~  593 (889)
T KOG4658|consen  516 IPQVK-SW-NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE  593 (889)
T ss_pred             ccccc-ch-hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence            12111 11 2666777777777777777766678888887775  555544 36778888888888777777777 4677


Q ss_pred             CCCCcEEecCCCCCCCCcccccCCCCcccEEecCCCCCCcccCCcccCCCCcEEEecCCCCCCccCCCcccceEEEecCc
Q 003496          219 TPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNT  298 (815)
Q Consensus       219 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~  298 (815)
                      +.+||+|+++++. ...+|.++++|++|.+|++..+..+..+                                      
T Consensus       594 Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~--------------------------------------  634 (889)
T KOG4658|consen  594 LVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESI--------------------------------------  634 (889)
T ss_pred             hhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccc--------------------------------------
Confidence            7777777777643 4567777777777777777664433222                                      


Q ss_pred             cccccchhhhccCCCCEEeccCCc--CccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCC----EEeccCCCcc
Q 003496          299 RIEEVPSSIECLTNLETLDLSFCK--RLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLL----EIDLRETAIR  372 (815)
Q Consensus       299 ~i~~lp~~l~~l~~L~~L~L~~~~--~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~----~L~L~~~~l~  372 (815)
                           |.....+++|++|.+..-.  .....-..+.++.+|+.+.+.....  .+-..+..+..|.    .+.+.++...
T Consensus       635 -----~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~  707 (889)
T KOG4658|consen  635 -----PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR  707 (889)
T ss_pred             -----cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc
Confidence                 1223446777777775533  1122223344455555555543222  1111122222222    2222223333


Q ss_pred             ccCchhccCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCCCchhh-hhcccceEEecCCCCccCCcccCCC
Q 003496          373 NLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSIS-DLNQLKKLKFSGCRGLVLPPLLSGL  451 (815)
Q Consensus       373 ~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~-~l~~L~~L~l~~~~~~~lp~~l~~l  451 (815)
                      ..+..+..+.+|+.|.+.+|............                  .... .++++..+.+.+|.....+.+....
T Consensus       708 ~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~------------------~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~  769 (889)
T KOG4658|consen  708 TLISSLGSLGNLEELSILDCGISEIVIEWEES------------------LIVLLCFPNLSKVSILNCHMLRDLTWLLFA  769 (889)
T ss_pred             eeecccccccCcceEEEEcCCCchhhcccccc------------------cchhhhHHHHHHHHhhccccccccchhhcc
Confidence            44444555555555555555443221111000                  0011 2556666677777777777777788


Q ss_pred             CCCCEEEecCCCCcc-cCcccCCCCCCCeeeccCCcCccCc--hhhhccCCcceecccccccccCCCCcccccceecccc
Q 003496          452 SSLTELHLTDCNITE-IPADIGSLSSIVWLALSGNHFERLP--TSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKN  528 (815)
Q Consensus       452 ~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~l~~c~~L~~lp~l~~sL~~L~i~~  528 (815)
                      ++|+.|.+..|...+ +.+....+..+..+.+..+.+..++  .+.+.++++..           +|-....++.+.+..
T Consensus       770 ~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~-----------~~l~~~~l~~~~ve~  838 (889)
T KOG4658|consen  770 PHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYW-----------LPLSFLKLEELIVEE  838 (889)
T ss_pred             CcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEe-----------cccCccchhheehhc
Confidence            899999999988766 3333444444444444443333221  11222222222           222222367777777


Q ss_pred             ccccCCCCC
Q 003496          529 CKRLQTLPE  537 (815)
Q Consensus       529 C~~L~~l~~  537 (815)
                      ||++..+|.
T Consensus       839 ~p~l~~~P~  847 (889)
T KOG4658|consen  839 CPKLGKLPL  847 (889)
T ss_pred             CcccccCcc
Confidence            887777774

>PLN03210 Resistant to P

Probab=99.90  E-value=3.1e-22  Score=247.62  Aligned_cols=285  Identities=29%  Similarity=0.463  Sum_probs=214.4

Q ss_pred             cccccc-CCceEEEEeCCCCCCccccCcccccCCCCCCCCcCcceEEeCCCCCCCCCCCC-CCccceeeecCCCC-cccc
Q 003496          113 NVFVNM-SNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNF-DPENLIELNLPYSN-VEQI  189 (815)
Q Consensus       113 ~~f~~~-~~Lr~L~l~~~~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~-i~~l  189 (815)
                      ..|..+ .+||.|.+.++.+.         .+|..+.  +.+|+.|++.++.++.+|..+ .+++|++|+|+++. +..+
T Consensus       582 ~~~~~lp~~Lr~L~~~~~~l~---------~lP~~f~--~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~i  650 (1153)
T PLN03210        582 EGFDYLPPKLRLLRWDKYPLR---------CMPSNFR--PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEI  650 (1153)
T ss_pred             cchhhcCcccEEEEecCCCCC---------CCCCcCC--ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcC
Confidence            345555 46999999887653         6777663  358999999999999988877 89999999998764 6667


Q ss_pred             cccccCCCCccEEecCCCCCCCcCC-CCCCCCCCcEEecCCCCCCCCcccccCCCCcccEEecCCCCCCcccCCcccCCC
Q 003496          190 WEGKKQAFKLKFIDLHHSQYLTKIP-DLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRS  268 (815)
Q Consensus       190 p~~~~~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~l~~  268 (815)
                      | .+..+++|++|+|++|..+..+| .+..+++|+.|++++|..+..+|..+ ++++|+.|++++|..+..+|..  ..+
T Consensus       651 p-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~n  726 (1153)
T PLN03210        651 P-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STN  726 (1153)
T ss_pred             C-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCC
Confidence            6 47788999999999988888888 67889999999999998888888776 7889999999998877776643  356


Q ss_pred             CcEEEecCCCCCCccCCC---------------------------------cccceEEEecCcc-ccccchhhhccCCCC
Q 003496          269 PIAVDFSDCVNLTEFPLV---------------------------------SGNIIELRLWNTR-IEEVPSSIECLTNLE  314 (815)
Q Consensus       269 L~~L~l~~~~~l~~l~~~---------------------------------~~~L~~L~l~~~~-i~~lp~~l~~l~~L~  314 (815)
                      |+.|+++++. +..+|..                                 ..+|+.|++++|. +..+|.+++++++|+
T Consensus       727 L~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~  805 (1153)
T PLN03210        727 ISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLE  805 (1153)
T ss_pred             cCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCC
Confidence            6777776665 3333321                                 1355666666653 446777777777788


Q ss_pred             EEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCccccCchhccCCCCcEEecCCCCC
Q 003496          315 TLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSE  394 (815)
Q Consensus       315 ~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~  394 (815)
                      .|++++|..++.+|..+ .+++|+.|++++|..+..+|..   ..+|+.|++++|.++.+|.++..+++|+.|++.+|+.
T Consensus       806 ~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~  881 (1153)
T PLN03210        806 HLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNN  881 (1153)
T ss_pred             EEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCC
Confidence            88887777777777665 6777778888777777766653   3567777788887777777777788888888888777


Q ss_pred             CCccchhhhcccccccccccccc
Q 003496          395 LASLPEKLENLKSLKYLNAEFSA  417 (815)
Q Consensus       395 ~~~l~~~l~~l~~L~~L~l~~~~  417 (815)
                      +..+|..+..+++|+.+++++|.
T Consensus       882 L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        882 LQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cCccCcccccccCCCeeecCCCc
Confidence            77777777777777777777664

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.89  E-value=5.5e-25  Score=243.39  Aligned_cols=385  Identities=22%  Similarity=0.283  Sum_probs=268.3

Q ss_pred             CcceEEeCCCCCCCCCCCC-CCccceeeecCCCCcccccccccCCCCccEEecCCCCCCCcCCCCCCCCCCcEEecCCCC
Q 003496          153 ELRYLHWHQYSLKTLPLNF-DPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCT  231 (815)
Q Consensus       153 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~  231 (815)
                      +|+.|++++|.+...|..+ .+.+|+.|+++.|.|..+|..+.++.+|++|.|.+|........+..+.+|+.|++++|.
T Consensus        46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~  125 (1081)
T KOG0618|consen   46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH  125 (1081)
T ss_pred             eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc
Confidence            6999999999999999988 899999999999999999999999999999999998854433379999999999999975


Q ss_pred             CCCCcccccCCCCcccEEecCCCCCCcccCCcccCCCCcEEEecCCCCCCccCCCcccceE-EEecCccccccchhhhcc
Q 003496          232 NLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIE-LRLWNTRIEEVPSSIECL  310 (815)
Q Consensus       232 ~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~-L~l~~~~i~~lp~~l~~l  310 (815)
                       ...+|..+..+..+..+..++|..+..++...    .+.+++..+.....++....+++. |++..|.+.  ...+..+
T Consensus       126 -f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~----ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~--~~dls~~  198 (1081)
T KOG0618|consen  126 -FGPIPLVIEVLTAEEELAASNNEKIQRLGQTS----IKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME--VLDLSNL  198 (1081)
T ss_pred             -cCCCchhHHhhhHHHHHhhhcchhhhhhcccc----chhhhhhhhhcccchhcchhhhheeeecccchhh--hhhhhhc
Confidence             56678888888888888888874444444322    677777777777777777777766 888888777  2334445


Q ss_pred             CCCCEEeccCCc--------------------CccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCC
Q 003496          311 TNLETLDLSFCK--------------------RLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETA  370 (815)
Q Consensus       311 ~~L~~L~L~~~~--------------------~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~  370 (815)
                      .+|+.|....+.                    +....+  -..-.+|+.++++.+. ...+|++++.+.+|+.+....|.
T Consensus       199 ~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~  275 (1081)
T KOG0618|consen  199 ANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNN-LSNLPEWIGACANLEALNANHNR  275 (1081)
T ss_pred             cchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhh-hhcchHHHHhcccceEecccchh
Confidence            555555444433                    321111  0112345555555533 23345666666666666666666


Q ss_pred             ccccCchhccCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCCCchhhh-----------------------
Q 003496          371 IRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISD-----------------------  427 (815)
Q Consensus       371 l~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~-----------------------  427 (815)
                      +.++|..+....+|+.|.+..|. +..+|.....+++|+.|++..|.+..+|..+-.                       
T Consensus       276 l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~  354 (1081)
T KOG0618|consen  276 LVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYE  354 (1081)
T ss_pred             HHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccccc
Confidence            66666666666666666665553 344555566677777777777777666542211                       


Q ss_pred             ---hcccceEEecCCCCc-cCCcccCCCCCCCEEEecCCCCcccCcc-cCCCCCCCeeeccCCcCccCchhhhccCCcce
Q 003496          428 ---LNQLKKLKFSGCRGL-VLPPLLSGLSSLTELHLTDCNITEIPAD-IGSLSSIVWLALSGNHFERLPTSVKQLSQLRY  502 (815)
Q Consensus       428 ---l~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~  502 (815)
                         ++.|+.|.+.+|... ..-+.+.++.+|+.|+|++|++..+|+. +.++..|++|+||||.++.+|..+..+..|++
T Consensus       355 e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~t  434 (1081)
T KOG0618|consen  355 ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHT  434 (1081)
T ss_pred             chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHH
Confidence               112334444444321 1223467889999999999999999865 78999999999999999999999999999999


Q ss_pred             ecccccccccCCCCc--ccccceeccccccccCCCC---CCC-Cchhhhhhhhh
Q 003496          503 LHLSNCNMLQSLPEL--PIYLVYLEAKNCKRLQTLP---EIP-SSVEELDASML  550 (815)
Q Consensus       503 L~l~~c~~L~~lp~l--~~sL~~L~i~~C~~L~~l~---~~p-~~l~~L~~~~~  550 (815)
                      |...+|. +.++|++  .+.|+.++++ |..|..+-   ..| +.|+.|+.++.
T Consensus       435 L~ahsN~-l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN  486 (1081)
T KOG0618|consen  435 LRAHSNQ-LLSFPELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGN  486 (1081)
T ss_pred             HhhcCCc-eeechhhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCC
Confidence            9887775 5667864  3567888875 55554332   255 66776665543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.77  E-value=4.7e-18  Score=195.43  Aligned_cols=71  Identities=20%  Similarity=0.290  Sum_probs=39.9

Q ss_pred             CcceEEeCCCCCCCCCCCCCCccceeeecCCCCcccccccccCCCCccEEecCCCCCCCcCCCCCCCCCCcEEecCCC
Q 003496          153 ELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNC  230 (815)
Q Consensus       153 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~  230 (815)
                      .-..|+++++.++++|..+. .+|+.|++.+|+++.+|..   .++|++|+|++|.+. .+|.+  .++|+.|++++|
T Consensus       202 ~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N  272 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSN  272 (788)
T ss_pred             CCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCc--ccccceeeccCC
Confidence            44556666666666666552 3566666666666666642   355666666666533 33321  245555555554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.75  E-value=2.1e-17  Score=190.02  Aligned_cols=260  Identities=22%  Similarity=0.276  Sum_probs=148.1

Q ss_pred             cceeeecCCCCcccccccccCCCCccEEecCCCCCCCcCCCCCCCCCCcEEecCCCCCCCCcccccCCCCcccEEecCCC
Q 003496          175 NLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGC  254 (815)
Q Consensus       175 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~  254 (815)
                      .-..|+++.+.++.+|..+.  .+|+.|++.+|.+. .+|.+  .++|++|++++|. +..+|..   .++|+.|++.+|
T Consensus       202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~l--p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~N  272 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPAL--PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFSN  272 (788)
T ss_pred             CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCC-CCCCC--CCCCcEEEecCCc-cCcccCc---ccccceeeccCC
Confidence            35567777777777777664  36777777777643 34432  3566666666653 2234431   234445555443


Q ss_pred             CCCcccCCcccCCCCcEEEecCCCCCCccCCCcccceEEEecCccccccchhhhccCCCCEEeccCCcCccccccccCCC
Q 003496          255 RSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKL  334 (815)
Q Consensus       255 ~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l  334 (815)
                      .                        +..+|....+|+.|++++|.++.+|..   +++|+.|++++|.+.+ +|..   .
T Consensus       273 ~------------------------L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p  321 (788)
T PRK15387        273 P------------------------LTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPAL---P  321 (788)
T ss_pred             c------------------------hhhhhhchhhcCEEECcCCcccccccc---ccccceeECCCCcccc-CCCC---c
Confidence            2                        233344445566667777777766653   3567777777765443 3331   2


Q ss_pred             CCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCccccCchhccCCCCcEEecCCCCCCCccchhhhccccccccccc
Q 003496          335 KSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAE  414 (815)
Q Consensus       335 ~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~  414 (815)
                      .+|+.|++++|... .+|..   ..+|+.|++++|.+..+|..   .++|+.|++++|                      
T Consensus       322 ~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N----------------------  372 (788)
T PRK15387        322 SELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNN----------------------  372 (788)
T ss_pred             ccccccccccCccc-ccccc---ccccceEecCCCccCCCCCC---Ccccceehhhcc----------------------
Confidence            34555666665433 23321   13566666666666655542   234444555544                      


Q ss_pred             cccCCCCCchhhhhcccceEEecCCCCccCCcccCCCCCCCEEEecCCCCcccCcccCCCCCCCeeeccCCcCccCchhh
Q 003496          415 FSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSV  494 (815)
Q Consensus       415 ~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l  494 (815)
                        .+..+|...   .+|+.|++++|....+|..   .++|+.|++++|+++.+|..   +.+|+.|++++|+++.+|..+
T Consensus       373 --~L~~LP~l~---~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl  441 (788)
T PRK15387        373 --RLTSLPALP---SGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESL  441 (788)
T ss_pred             --ccccCcccc---cccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHH
Confidence              444433221   2345555555554444432   24677777777777777653   245677777777777777777


Q ss_pred             hccCCcceecccccccccCC
Q 003496          495 KQLSQLRYLHLSNCNMLQSL  514 (815)
Q Consensus       495 ~~l~~L~~L~l~~c~~L~~l  514 (815)
                      ..+++|+.|+|++|+.-...
T Consensus       442 ~~L~~L~~LdLs~N~Ls~~~  461 (788)
T PRK15387        442 IHLSSETTVNLEGNPLSERT  461 (788)
T ss_pred             hhccCCCeEECCCCCCCchH
Confidence            77777777777777754443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.66  E-value=6.6e-16  Score=179.12  Aligned_cols=76  Identities=22%  Similarity=0.354  Sum_probs=34.3

Q ss_pred             cCCEEeccCCCccccCchhccCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCCCchhhhh----cccceEE
Q 003496          360 HLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDL----NQLKKLK  435 (815)
Q Consensus       360 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l----~~L~~L~  435 (815)
                      +|+.|++++|.+..+|..+  .++|+.|++++|... .+|..+.  .+|+.|++++|.+..+|..+..+    +.+..+.
T Consensus       347 sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~  421 (754)
T PRK15370        347 ELQVLDVSKNQITVLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRII  421 (754)
T ss_pred             cccEEECCCCCCCcCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEE
Confidence            4444444444444444333  234555555554322 3343332  24555555555555554433332    3445555


Q ss_pred             ecCCC
Q 003496          436 FSGCR  440 (815)
Q Consensus       436 l~~~~  440 (815)
                      +.+|.
T Consensus       422 L~~Np  426 (754)
T PRK15370        422 VEYNP  426 (754)
T ss_pred             eeCCC
Confidence            55554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.65  E-value=7e-18  Score=170.73  Aligned_cols=267  Identities=20%  Similarity=0.175  Sum_probs=160.8

Q ss_pred             CCCcCcceEEeCCCCCCCCCCCC--CCccceeeecCCCCcccc-cccccCCCCccEEecCCCCCCCcCC--CCCCCCCCc
Q 003496          149 YLPEELRYLHWHQYSLKTLPLNF--DPENLIELNLPYSNVEQI-WEGKKQAFKLKFIDLHHSQYLTKIP--DLVETPNLE  223 (815)
Q Consensus       149 ~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~~p--~l~~l~~L~  223 (815)
                      .+|..-..+++..|.++.||+..  .+++||.|||++|.|+.| |..++.+..|..|-+.++..++.+|  .|.++..|+
T Consensus        64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq  143 (498)
T KOG4237|consen   64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ  143 (498)
T ss_pred             cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence            34567888899999999998654  899999999999999986 6788888888888887755566777  588888898


Q ss_pred             EEecCCCCCCCCcccccCCCCcccEEecCCCCCCcccCCcc-c-CCCCcEEEecCCCCCC------------ccCCCccc
Q 003496          224 RINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNI-Y-FRSPIAVDFSDCVNLT------------EFPLVSGN  289 (815)
Q Consensus       224 ~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~-~-l~~L~~L~l~~~~~l~------------~l~~~~~~  289 (815)
                      .|.+.-|...-.....+..+++|..|.+.++. ...++... . +..++.+.+..++.+.            ..|...+.
T Consensus       144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg  222 (498)
T KOG4237|consen  144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG  222 (498)
T ss_pred             HHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence            88888776555555677888888888888754 44444422 2 6777777777666321            11111111


Q ss_pred             c---eEEEecCccccccchh--hhccCCCCEEeccCCcCccccc-cccCCCCCCCEEeeCCCcCCCCccHHHhccccCCE
Q 003496          290 I---IELRLWNTRIEEVPSS--IECLTNLETLDLSFCKRLKRVS-TSICKLKSLCWLELGGCSNLETFPEILEKMEHLLE  363 (815)
Q Consensus       290 L---~~L~l~~~~i~~lp~~--l~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~  363 (815)
                      .   ....+...++..+++.  ...+..+..=-.+.|......| ..|.+|++|++|++++|...+.-+.+|.+...+++
T Consensus       223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e  302 (498)
T KOG4237|consen  223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE  302 (498)
T ss_pred             ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence            1   1111112222221111  0011111111111222222222 22556666666666666666555566666666666


Q ss_pred             EeccCCCccccCc-hhccCCCCcEEecCCCCCCCccchhhhccccccccccccc
Q 003496          364 IDLRETAIRNLPS-SIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFS  416 (815)
Q Consensus       364 L~L~~~~l~~lp~-~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~  416 (815)
                      |.|..|++..+.. .+..+.+|+.|+|.+|+.....|..|..+.+|..|++-.|
T Consensus       303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N  356 (498)
T KOG4237|consen  303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN  356 (498)
T ss_pred             hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence            6666666665542 3455666666666666666666666666666666665443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.65  E-value=4.9e-16  Score=180.18  Aligned_cols=243  Identities=25%  Similarity=0.338  Sum_probs=118.8

Q ss_pred             CCcEEecCCCCCCCCcccccCCCCcccEEecCCCCCCcccCCcccCCCCcEEEecCCCCCCccCCC-cccceEEEecCcc
Q 003496          221 NLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLV-SGNIIELRLWNTR  299 (815)
Q Consensus       221 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~-~~~L~~L~l~~~~  299 (815)
                      +...|+++++. +..+|..+.  +.|+.|++++|. +..+|..+ ..+|+.|++++|. +..+|.. ..+++.|++++|.
T Consensus       179 ~~~~L~L~~~~-LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~~l-~~nL~~L~Ls~N~-LtsLP~~l~~~L~~L~Ls~N~  252 (754)
T PRK15370        179 NKTELRLKILG-LTTIPACIP--EQITTLILDNNE-LKSLPENL-QGNIKTLYANSNQ-LTSIPATLPDTIQEMELSINR  252 (754)
T ss_pred             CceEEEeCCCC-cCcCCcccc--cCCcEEEecCCC-CCcCChhh-ccCCCEEECCCCc-cccCChhhhccccEEECcCCc
Confidence            45667777653 445665443  467777777764 44555543 2456666666553 3344432 2244555555555


Q ss_pred             ccccchhhhccCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCccccCchhc
Q 003496          300 IEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIE  379 (815)
Q Consensus       300 i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~~lp~~l~  379 (815)
                      +..+|..+.  ++|+.|++++|.+. .+|..+.  ++|+.|++++|... .+|..+.  ++|+.|++++|.+..+|..+ 
T Consensus       253 L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l-  323 (754)
T PRK15370        253 ITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTALPETL-  323 (754)
T ss_pred             cCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccCCccc-
Confidence            555554432  34555555544332 3343322  24444444444222 2222211  23344444444444333222 


Q ss_pred             cCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCCCchhhhhcccceEEecCCCCccCCcccCCCCCCCEEEe
Q 003496          380 YLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHL  459 (815)
Q Consensus       380 ~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L  459 (815)
                                               .++|+.|++++|.+..+|..+.  ++|+.|++++|....+|..+  .++|+.|+|
T Consensus       324 -------------------------~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdL  374 (754)
T PRK15370        324 -------------------------PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDV  374 (754)
T ss_pred             -------------------------cccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEEC
Confidence                                     1344444444444444443332  34555555555544444433  245666666


Q ss_pred             cCCCCcccCcccCCCCCCCeeeccCCcCccCchhhhc----cCCcceecccccc
Q 003496          460 TDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQ----LSQLRYLHLSNCN  509 (815)
Q Consensus       460 s~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~----l~~L~~L~l~~c~  509 (815)
                      ++|+++.+|..+.  .+|+.|++++|++..+|..+..    ++++..|++.+|+
T Consensus       375 s~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        375 SRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             CCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence            6666666665443  3566666666666665554433    3556666666665

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.51  E-value=8.1e-16  Score=138.37  Aligned_cols=155  Identities=26%  Similarity=0.462  Sum_probs=103.5

Q ss_pred             CCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCccccCchhccCCCCcEEecCCCCCCCccchhhhcccccccc
Q 003496          332 CKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYL  411 (815)
Q Consensus       332 ~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L  411 (815)
                      ..+.+...|.+++|. +..+|..+..+.+|+.|++.+|+++++|.+++.++.|+.|++.-| .+..+|..|+.++.|+.|
T Consensus        30 f~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levl  107 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVL  107 (264)
T ss_pred             cchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhh
Confidence            345556666666643 344566677777788888888888888888888888887777654 355677777777777777


Q ss_pred             ccccccCCCCCchhhhhcccceEEecCCCCccCCcccCCCCCCCEEEecCCCCcccCcccCCCCCCCeeeccCCcCccCc
Q 003496          412 NAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLP  491 (815)
Q Consensus       412 ~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp  491 (815)
                      ++..|.+.+-                     .+|..+..+..|+.|.+++|.+.-+|.+++.+++|+.|.+..|.+.++|
T Consensus       108 dltynnl~e~---------------------~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lp  166 (264)
T KOG0617|consen  108 DLTYNNLNEN---------------------SLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLP  166 (264)
T ss_pred             hccccccccc---------------------cCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCc
Confidence            7777766543                     2333344444555555555555556666666777777777777777777


Q ss_pred             hhhhccCCcceecccccc
Q 003496          492 TSVKQLSQLRYLHLSNCN  509 (815)
Q Consensus       492 ~~l~~l~~L~~L~l~~c~  509 (815)
                      ..++.++.|+.|.|.+|+
T Consensus       167 keig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  167 KEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             HHHHHHHHHHHHhcccce
Confidence            777777777777777765

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.47  E-value=4.9e-15  Score=159.55  Aligned_cols=59  Identities=27%  Similarity=0.344  Sum_probs=40.2

Q ss_pred             CCCCCEEEecCCCCcc-----cCcccCCCCCCCeeeccCCcCcc-----Cchhhhcc-CCcceecccccc
Q 003496          451 LSSLTELHLTDCNITE-----IPADIGSLSSIVWLALSGNHFER-----LPTSVKQL-SQLRYLHLSNCN  509 (815)
Q Consensus       451 l~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l-~~L~~L~l~~c~  509 (815)
                      .+.|++|++++|.+++     +...+..+++|+.+++++|.+..     +...+... +.|+.|++.+++
T Consensus       249 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         249 NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             CCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            3567777777777752     33445566788888888888763     33344555 788888888765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.47  E-value=1e-14  Score=157.07  Aligned_cols=190  Identities=21%  Similarity=0.182  Sum_probs=102.2

Q ss_pred             chhhhccCCCCEEeccCCcCccccccccCCCCC---CCEEeeCCCcCCC----CccHHHhcc-ccCCEEeccCCCcc---
Q 003496          304 PSSIECLTNLETLDLSFCKRLKRVSTSICKLKS---LCWLELGGCSNLE----TFPEILEKM-EHLLEIDLRETAIR---  372 (815)
Q Consensus       304 p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~---L~~L~Ls~~~~~~----~~p~~l~~l-~~L~~L~L~~~~l~---  372 (815)
                      +..+..+++|+.|++++|.+....+..+..+.+   |+.|++++|....    .+...+..+ ++|+.|++++|.++   
T Consensus        74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  153 (319)
T cd00116          74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS  153 (319)
T ss_pred             HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence            334445556666666665554444333333333   6666666655432    122233344 55555665555554   


Q ss_pred             --ccCchhccCCCCcEEecCCCCCCCc----cchhhhccccccccccccccCCCCCchhhhhcccceEEecCCCCccCCc
Q 003496          373 --NLPSSIEYLEGLRKLDLGDCSELAS----LPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPP  446 (815)
Q Consensus       373 --~lp~~l~~l~~L~~L~L~~~~~~~~----l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~  446 (815)
                        .++..+..+++|+.|++++|.....    ++..+..+++|+.|++++|.+....  .                ..++.
T Consensus       154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~--~----------------~~l~~  215 (319)
T cd00116         154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG--A----------------SALAE  215 (319)
T ss_pred             HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH--H----------------HHHHH
Confidence              2233344445555555555544321    1222233334444444444433210  0                11223


Q ss_pred             ccCCCCCCCEEEecCCCCcc--c---Cccc-CCCCCCCeeeccCCcCc-----cCchhhhccCCcceecccccccc
Q 003496          447 LLSGLSSLTELHLTDCNITE--I---PADI-GSLSSIVWLALSGNHFE-----RLPTSVKQLSQLRYLHLSNCNML  511 (815)
Q Consensus       447 ~l~~l~~L~~L~Ls~~~l~~--l---p~~l-~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~l~~c~~L  511 (815)
                      .+..+++|+.|++++|.+++  +   ...+ ...+.|++|++++|.++     .+...+..+++|+++++++|+.-
T Consensus       216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            45567888899998888775  1   1111 13578999999999885     34556667789999999998754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.45  E-value=2.2e-15  Score=135.62  Aligned_cols=163  Identities=31%  Similarity=0.454  Sum_probs=130.5

Q ss_pred             cCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCCCchhhhhcccceEEecCCCCccCCcccCCCCCCCEEEe
Q 003496          380 YLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHL  459 (815)
Q Consensus       380 ~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L  459 (815)
                      .+.+.+.|.+++|+ +..+|..+..+.+|+.|++++|.+.++|.+++.+++|+.|++.-|+...+|..++.+|.|+.|++
T Consensus        31 ~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   31 NMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL  109 (264)
T ss_pred             chhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence            44556666666654 34456667778888888888888888888888888888888888888889999999999999999


Q ss_pred             cCCCCcc--cCcccCCCCCCCeeeccCCcCccCchhhhccCCcceecccccccccCCCCc---ccccceeccccccccCC
Q 003496          460 TDCNITE--IPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPEL---PIYLVYLEAKNCKRLQT  534 (815)
Q Consensus       460 s~~~l~~--lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~~L~~lp~l---~~sL~~L~i~~C~~L~~  534 (815)
                      ..|++.+  +|..|..++.|+-|.|++|.|+-+|..++.+++|+.|.+.+|..+ ++|.-   ...|++|+|.+.    +
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn----r  184 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN----R  184 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc----e
Confidence            9999998  899999999999999999999999999999999999999998744 57753   356777888763    2


Q ss_pred             CCCCCCchhhhhhh
Q 003496          535 LPEIPSSVEELDAS  548 (815)
Q Consensus       535 l~~~p~~l~~L~~~  548 (815)
                      +.-+|+.+..|+..
T Consensus       185 l~vlppel~~l~l~  198 (264)
T KOG0617|consen  185 LTVLPPELANLDLV  198 (264)
T ss_pred             eeecChhhhhhhhh
Confidence            33345555555543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.38  E-value=5.6e-14  Score=142.76  Aligned_cols=298  Identities=19%  Similarity=0.220  Sum_probs=173.6

Q ss_pred             EeCCCCCCCCCCCCCCccceeeecCCCCcccccc-cccCCCCccEEecCCCCCCCcCC-CCCCCCCCcEEecCCCCCCCC
Q 003496          158 HWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWE-GKKQAFKLKFIDLHHSQYLTKIP-DLVETPNLERINLLNCTNLPY  235 (815)
Q Consensus       158 ~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~~~~~  235 (815)
                      +-++-.++++|... +..-+.++|..|.|+.||+ .++.+++||.|||++|.+...-| .|.++..|-+|.+.++..+..
T Consensus        52 dCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~  130 (498)
T KOG4237|consen   52 DCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD  130 (498)
T ss_pred             EccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence            34455567777665 4466889999999999987 58999999999999999877767 588888888888888555666


Q ss_pred             ccc-ccCCCCcccEEecCCCCCCcccCCcccCCCCcEEEecCCCCCCccCCCcccceEEEecCccccccch-hhhccCCC
Q 003496          236 ISS-SIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPS-SIECLTNL  313 (815)
Q Consensus       236 ~~~-~l~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~-~l~~l~~L  313 (815)
                      +|+ .++.|..|+.|.+.-|..- .++...                   -....++..|.+.+|.+..++. .+..+..+
T Consensus       131 l~k~~F~gL~slqrLllNan~i~-Cir~~a-------------------l~dL~~l~lLslyDn~~q~i~~~tf~~l~~i  190 (498)
T KOG4237|consen  131 LPKGAFGGLSSLQRLLLNANHIN-CIRQDA-------------------LRDLPSLSLLSLYDNKIQSICKGTFQGLAAI  190 (498)
T ss_pred             hhhhHhhhHHHHHHHhcChhhhc-chhHHH-------------------HHHhhhcchhcccchhhhhhccccccchhcc
Confidence            664 4677777777776654321 111100                   0111223334444455555544 44555555


Q ss_pred             CEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCccccCch--hccCCCCcEEecCC
Q 003496          314 ETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSS--IEYLEGLRKLDLGD  391 (815)
Q Consensus       314 ~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~~lp~~--l~~l~~L~~L~L~~  391 (815)
                      +.+.+..+.+..     .++++.|...       ....|..++......-..+....+..+...  ...+.++..=-...
T Consensus       191 ~tlhlA~np~ic-----dCnL~wla~~-------~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~  258 (498)
T KOG4237|consen  191 KTLHLAQNPFIC-----DCNLPWLADD-------LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSE  258 (498)
T ss_pred             chHhhhcCcccc-----ccccchhhhH-------HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccc
Confidence            555555443221     1112211111       111122222222222222222222222211  11111221112233


Q ss_pred             CCCCCccch-hhhccccccccccccccCCCC-CchhhhhcccceEEecCCCCccCC-cccCCCCCCCEEEecCCCCcc-c
Q 003496          392 CSELASLPE-KLENLKSLKYLNAEFSAIGQL-PSSISDLNQLKKLKFSGCRGLVLP-PLLSGLSSLTELHLTDCNITE-I  467 (815)
Q Consensus       392 ~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~Ls~~~l~~-l  467 (815)
                      |......|. .|..+++|+.|++++|.++.+ +.+|..+..+++|.+..|+...+. ..+.++..|+.|+|.+|+|+. -
T Consensus       259 d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~  338 (498)
T KOG4237|consen  259 DFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA  338 (498)
T ss_pred             cCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe
Confidence            333344442 366777788888888877777 667777777777777777654443 346778888888888888887 5


Q ss_pred             CcccCCCCCCCeeeccCCcCc
Q 003496          468 PADIGSLSSIVWLALSGNHFE  488 (815)
Q Consensus       468 p~~l~~l~~L~~L~Ls~n~l~  488 (815)
                      |-.|..+.+|.+|+|-.|.+.
T Consensus       339 ~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  339 PGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             cccccccceeeeeehccCccc
Confidence            667888888888888777553

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.23  E-value=1.4e-11  Score=145.66  Aligned_cols=323  Identities=22%  Similarity=0.306  Sum_probs=193.1

Q ss_pred             cCCceEEEEeCCCCCCccccCcccccCCCCCCCCcCcceEEeCCCC--CCCCCCCC--CCccceeeecCCC-Cccccccc
Q 003496          118 MSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYS--LKTLPLNF--DPENLIELNLPYS-NVEQIWEG  192 (815)
Q Consensus       118 ~~~Lr~L~l~~~~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~--l~~lp~~~--~l~~L~~L~L~~~-~i~~lp~~  192 (815)
                      ....|...+.++.+.         .++....+.  +|++|-+.++.  +..++..|  .++.|++|||++| .+.+||+.
T Consensus       522 ~~~~rr~s~~~~~~~---------~~~~~~~~~--~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~  590 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIE---------HIAGSSENP--KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS  590 (889)
T ss_pred             hhheeEEEEeccchh---------hccCCCCCC--ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence            377888888877653         455544433  79999999996  77777754  8999999999964 57889999


Q ss_pred             ccCCCCccEEecCCCCCCCcCC-CCCCCCCCcEEecCCCCCCCCcccccCCCCcccEEecCCCCCCcccCCcccCCCCcE
Q 003496          193 KKQAFKLKFIDLHHSQYLTKIP-DLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIA  271 (815)
Q Consensus       193 ~~~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~  271 (815)
                      ++.|.+||+|+|++..+. .+| .+.++..|.+|++..+..+..+|..+..+.+|++|.+........            
T Consensus       591 I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~------------  657 (889)
T KOG4658|consen  591 IGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSND------------  657 (889)
T ss_pred             HhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccc------------
Confidence            999999999999999865 555 899999999999999887777777777799999999876320000            


Q ss_pred             EEecCCCCCCccCCCcccceEEEecCccccccchhhhccCCCCEEeccCCcCccccccccCCCCCCC----EEeeCCCcC
Q 003496          272 VDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLC----WLELGGCSN  347 (815)
Q Consensus       272 L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~----~L~Ls~~~~  347 (815)
                                                   ...-..+.++.+|+.+.+.....  .+-..+..+..|.    .+.+.+ ..
T Consensus       658 -----------------------------~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~-~~  705 (889)
T KOG4658|consen  658 -----------------------------KLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEG-CS  705 (889)
T ss_pred             -----------------------------hhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcc-cc
Confidence                                         00111223445555555543322  1111122233333    333333 23


Q ss_pred             CCCccHHHhccccCCEEeccCCCccccCc-hhc-----c-CCCCcEEecCCCCCCCccchhhhccccccccccccccCCC
Q 003496          348 LETFPEILEKMEHLLEIDLRETAIRNLPS-SIE-----Y-LEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQ  420 (815)
Q Consensus       348 ~~~~p~~l~~l~~L~~L~L~~~~l~~lp~-~l~-----~-l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~  420 (815)
                      ....+..+..+.+|+.|.+.++.+.+... +..     . ++++..+.+.+|..                        ..
T Consensus       706 ~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~------------------------~r  761 (889)
T KOG4658|consen  706 KRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHM------------------------LR  761 (889)
T ss_pred             cceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccc------------------------cc
Confidence            34455667889999999999988864322 111     1 22333333333332                        22


Q ss_pred             CCchhhhhcccceEEecCCCCccCC-cccCCCCCCCEEEecCCCCcccC--cccCCCCCCCeeeccCCcCccCchhhhcc
Q 003496          421 LPSSISDLNQLKKLKFSGCRGLVLP-PLLSGLSSLTELHLTDCNITEIP--ADIGSLSSIVWLALSGNHFERLPTSVKQL  497 (815)
Q Consensus       421 ~p~~l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~Ls~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l  497 (815)
                      .+.+....++|+.|.+..|.....| +....+..+..+.+..+.+..++  .+.+.++++..+.+.             +
T Consensus       762 ~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~-------------~  828 (889)
T KOG4658|consen  762 DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS-------------F  828 (889)
T ss_pred             ccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC-------------c
Confidence            2333334455555555555533322 22333333443333333333221  122333333332222             2


Q ss_pred             CCcceecccccccccCCCCcccccceeccccc-cccCCCCC
Q 003496          498 SQLRYLHLSNCNMLQSLPELPIYLVYLEAKNC-KRLQTLPE  537 (815)
Q Consensus       498 ~~L~~L~l~~c~~L~~lp~l~~sL~~L~i~~C-~~L~~l~~  537 (815)
                      +.|+.+.+..|++++++|.    +..+.+.+| +.+...|+
T Consensus       829 ~~l~~~~ve~~p~l~~~P~----~~~~~i~~~~~~~~~~~~  865 (889)
T KOG4658|consen  829 LKLEELIVEECPKLGKLPL----LSTLTIVGCEEKLKEYPD  865 (889)
T ss_pred             cchhheehhcCcccccCcc----ccccceeccccceeecCC
Confidence            2388888888999988885    345667776 66666664

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.97  E-value=1e-10  Score=124.59  Aligned_cols=191  Identities=27%  Similarity=0.407  Sum_probs=129.5

Q ss_pred             eEEEecCccccccchhhhccCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCC
Q 003496          291 IELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETA  370 (815)
Q Consensus       291 ~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~  370 (815)
                      ...+++.|++.++|..+..+..|+.+.+..|.                         ...+|..+.++..|..|+++.|.
T Consensus        78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-------------------------~r~ip~~i~~L~~lt~l~ls~Nq  132 (722)
T KOG0532|consen   78 VFADLSRNRFSELPEEACAFVSLESLILYHNC-------------------------IRTIPEAICNLEALTFLDLSSNQ  132 (722)
T ss_pred             hhhhccccccccCchHHHHHHHHHHHHHHhcc-------------------------ceecchhhhhhhHHHHhhhccch
Confidence            34445555566666655555555555544432                         23455566666666666666676


Q ss_pred             ccccCchhccCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCCCchhhhhcccceEEecCCCCccCCcccCC
Q 003496          371 IRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSG  450 (815)
Q Consensus       371 l~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~  450 (815)
                      +..+|..++.++ |+.|-+++| +++.+|+.++.++.|..|+.+.|.+..+|..++.+.+|+.|++..|....+|..+..
T Consensus       133 lS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~  210 (722)
T KOG0532|consen  133 LSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS  210 (722)
T ss_pred             hhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC
Confidence            666666666555 566666554 355667777777777777777777777777777777777777777777777776663


Q ss_pred             CCCCCEEEecCCCCcccCcccCCCCCCCeeeccCCcCccCchhhhc---cCCcceecccccc
Q 003496          451 LSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQ---LSQLRYLHLSNCN  509 (815)
Q Consensus       451 l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~---l~~L~~L~l~~c~  509 (815)
                      + .|..||++.|++..+|..|..|+.|++|-|.+|.+.+=|..+.-   ..--++|++.-|+
T Consensus       211 L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  211 L-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             C-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence            3 47888888888888888888888888888888888877765532   3334677777774

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.94  E-value=1.2e-09  Score=121.29  Aligned_cols=180  Identities=32%  Similarity=0.494  Sum_probs=124.7

Q ss_pred             CCCCCCEEeeCCCcCCCCccHHHhccc-cCCEEeccCCCccccCchhccCCCCcEEecCCCCCCCccchhhhcccccccc
Q 003496          333 KLKSLCWLELGGCSNLETFPEILEKME-HLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYL  411 (815)
Q Consensus       333 ~l~~L~~L~Ls~~~~~~~~p~~l~~l~-~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L  411 (815)
                      .++.++.|.+.++.. ..++.....+. +|+.|++++|.+..+|..+..+++|+.|++++|+. ..+|.....++.|+.|
T Consensus       114 ~~~~l~~L~l~~n~i-~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~~~L~~L  191 (394)
T COG4886         114 ELTNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNL  191 (394)
T ss_pred             cccceeEEecCCccc-ccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh-hhhhhhhhhhhhhhhe
Confidence            345555555555433 33344444443 67777777777777766667777777777776653 3334444466777777


Q ss_pred             ccccccCCCCCchhhhhcccceEEecCCCCccCCcccCCCCCCCEEEecCCCCcccCcccCCCCCCCeeeccCCcCccCc
Q 003496          412 NAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLP  491 (815)
Q Consensus       412 ~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp  491 (815)
                      ++++|.+..+|..+.....|+.+.++++.....+..+..+..+..|.+.++++..++..++.+++|++|++++|.++.++
T Consensus       192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~  271 (394)
T COG4886         192 DLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS  271 (394)
T ss_pred             eccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccccc
Confidence            77777777777766666667777777776666677777778888888888887777777888888888888888888777


Q ss_pred             hhhhccCCcceecccccccccCCC
Q 003496          492 TSVKQLSQLRYLHLSNCNMLQSLP  515 (815)
Q Consensus       492 ~~l~~l~~L~~L~l~~c~~L~~lp  515 (815)
                      . +..+.+|+.|+++++.....+|
T Consensus       272 ~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         272 S-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             c-ccccCccCEEeccCccccccch
Confidence            5 7778888888888877665544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.91  E-value=7e-11  Score=125.84  Aligned_cols=186  Identities=29%  Similarity=0.425  Sum_probs=162.0

Q ss_pred             EEeeCCCcCCCCccHHHhccccCCEEeccCCCccccCchhccCCCCcEEecCCCCCCCccchhhhccccccccccccccC
Q 003496          339 WLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAI  418 (815)
Q Consensus       339 ~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~  418 (815)
                      ..+++.|. ...+|..+..+..|+.+.+..|.+..+|..+.++..|+.|+|+.|+ +..+|..++.|+ |+.|.+++|++
T Consensus        79 ~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNkl  155 (722)
T KOG0532|consen   79 FADLSRNR-FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNKL  155 (722)
T ss_pred             hhhccccc-cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecCcc
Confidence            44555533 4567888889999999999999999999999999999999999876 456787788776 89999999999


Q ss_pred             CCCCchhhhhcccceEEecCCCCccCCcccCCCCCCCEEEecCCCCcccCcccCCCCCCCeeeccCCcCccCchhhhccC
Q 003496          419 GQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLS  498 (815)
Q Consensus       419 ~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~  498 (815)
                      +.+|..++.+..|..|+.+.|....+|+.++++.+|+.|.+..|++..+|+.+. .-.|..||++.|++..||..+..++
T Consensus       156 ~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~  234 (722)
T KOG0532|consen  156 TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFRKMR  234 (722)
T ss_pred             ccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecchhhhhhh
Confidence            999999999999999999999999999999999999999999999999999988 4468899999999999999999999


Q ss_pred             CcceecccccccccCCCCc------ccccceeccccc
Q 003496          499 QLRYLHLSNCNMLQSLPEL------PIYLVYLEAKNC  529 (815)
Q Consensus       499 ~L~~L~l~~c~~L~~lp~l------~~sL~~L~i~~C  529 (815)
                      .|++|.|.+|+ |++=|.-      ..-.++|++.-|
T Consensus       235 ~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  235 HLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             hheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence            99999999988 6665531      122578888888

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=6.8e-10  Score=115.10  Aligned_cols=180  Identities=21%  Similarity=0.230  Sum_probs=109.8

Q ss_pred             CCCCCCCEEeeCCCcCCC--CccHHHhccccCCEEeccCCCccccCch--hccCCCCcEEecCCCCCCCc-cchhhhccc
Q 003496          332 CKLKSLCWLELGGCSNLE--TFPEILEKMEHLLEIDLRETAIRNLPSS--IEYLEGLRKLDLGDCSELAS-LPEKLENLK  406 (815)
Q Consensus       332 ~~l~~L~~L~Ls~~~~~~--~~p~~l~~l~~L~~L~L~~~~l~~lp~~--l~~l~~L~~L~L~~~~~~~~-l~~~l~~l~  406 (815)
                      ..+++++.|+|++|-...  .+-.....+++|+.|+++.|.+.....+  -..++.|+.|.|+.|..... +...+..+|
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP  222 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP  222 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence            345555555555543221  2223344556666666666655533222  12466777777777765422 233345567


Q ss_pred             ccccccccccc-CCCCCchhhhhcccceEEecCCCCccCC--cccCCCCCCCEEEecCCCCcc--cCcc-----cCCCCC
Q 003496          407 SLKYLNAEFSA-IGQLPSSISDLNQLKKLKFSGCRGLVLP--PLLSGLSSLTELHLTDCNITE--IPAD-----IGSLSS  476 (815)
Q Consensus       407 ~L~~L~l~~~~-~~~~p~~l~~l~~L~~L~l~~~~~~~lp--~~l~~l~~L~~L~Ls~~~l~~--lp~~-----l~~l~~  476 (815)
                      +|+.|++..|. +........-+..|+.|+|++|....++  ...+.++.|+.|+++.|++.+  +|+.     ...+++
T Consensus       223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k  302 (505)
T KOG3207|consen  223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK  302 (505)
T ss_pred             cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccc
Confidence            77777777774 2222344455666777777777766665  457788888888888888877  4443     466788


Q ss_pred             CCeeeccCCcCccCc--hhhhccCCcceecccccccc
Q 003496          477 IVWLALSGNHFERLP--TSVKQLSQLRYLHLSNCNML  511 (815)
Q Consensus       477 L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~l~~c~~L  511 (815)
                      |++|++..|++...+  ..+..+++|+.|.+..++.-
T Consensus       303 L~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  303 LEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            888888888886554  24556777777777666533

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.89  E-value=2.9e-09  Score=118.12  Aligned_cols=185  Identities=32%  Similarity=0.419  Sum_probs=123.2

Q ss_pred             ccCCCCEEeccCCcCccccccccCCCC-CCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCccccCchhccCCCCcEE
Q 003496          309 CLTNLETLDLSFCKRLKRVSTSICKLK-SLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKL  387 (815)
Q Consensus       309 ~l~~L~~L~L~~~~~~~~lp~~l~~l~-~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L  387 (815)
                      .++.++.|++.++... .++.....+. +|+.|+++++.. ..+|..++.+++|+.|++++|.+.++|...+.+++|+.|
T Consensus       114 ~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L  191 (394)
T COG4886         114 ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL  191 (394)
T ss_pred             cccceeEEecCCcccc-cCccccccchhhcccccccccch-hhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence            3344444444443322 2333333332 555555555332 233345566666666666666666666666666667777


Q ss_pred             ecCCCCCCCccchhhhccccccccccccccCCCCCchhhhhcccceEEecCCCCccCCcccCCCCCCCEEEecCCCCccc
Q 003496          388 DLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEI  467 (815)
Q Consensus       388 ~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~~~l~~l  467 (815)
                      +++++.. ..+|.....+..|+.|.+++|.+...+..+..+.++..+.+.++....++..++.+++|+.|++++|.++++
T Consensus       192 ~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i  270 (394)
T COG4886         192 DLSGNKI-SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSI  270 (394)
T ss_pred             eccCCcc-ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccc
Confidence            7766543 344444445555777777777666667777777788888877777777788889999999999999999998


Q ss_pred             CcccCCCCCCCeeeccCCcCccCchhhhcc
Q 003496          468 PADIGSLSSIVWLALSGNHFERLPTSVKQL  497 (815)
Q Consensus       468 p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l  497 (815)
                      +. ++.+.+|+.|++++|.+..++......
T Consensus       271 ~~-~~~~~~l~~L~~s~n~~~~~~~~~~~~  299 (394)
T COG4886         271 SS-LGSLTNLRELDLSGNSLSNALPLIALL  299 (394)
T ss_pred             cc-ccccCccCEEeccCccccccchhhhcc
Confidence            87 899999999999999988666444433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=7.5e-10  Score=114.76  Aligned_cols=199  Identities=19%  Similarity=0.181  Sum_probs=126.6

Q ss_pred             ceEEEecCccccccc--hhhhccCCCCEEeccCCcCccc--cccccCCCCCCCEEeeCCCcCCCCccH-HHhccccCCEE
Q 003496          290 IIELRLWNTRIEEVP--SSIECLTNLETLDLSFCKRLKR--VSTSICKLKSLCWLELGGCSNLETFPE-ILEKMEHLLEI  364 (815)
Q Consensus       290 L~~L~l~~~~i~~lp--~~l~~l~~L~~L~L~~~~~~~~--lp~~l~~l~~L~~L~Ls~~~~~~~~p~-~l~~l~~L~~L  364 (815)
                      |+.+.|.++.+...+  .....+++++.|||+.|-+...  +-.-...|++|+.|+|+.|...-.... .-..++.|+.|
T Consensus       123 L~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L  202 (505)
T KOG3207|consen  123 LREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQL  202 (505)
T ss_pred             hhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheE
Confidence            344445555555444  2456677777777777644332  222244677777777776654322111 11245667777


Q ss_pred             eccCCCcc--ccCchhccCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCCC--chhhhhcccceEEecCCC
Q 003496          365 DLRETAIR--NLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLP--SSISDLNQLKKLKFSGCR  440 (815)
Q Consensus       365 ~L~~~~l~--~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p--~~l~~l~~L~~L~l~~~~  440 (815)
                      .+++|++.  ++...+..+|+|+.|++..|.....-......+..|+.|+|++|.+...+  ...+.++.|..|+++.+.
T Consensus       203 ~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg  282 (505)
T KOG3207|consen  203 VLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG  282 (505)
T ss_pred             EeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC
Confidence            77777776  34444566777777777777533333334455677778888888777765  556777778888777776


Q ss_pred             Ccc--CCcc-----cCCCCCCCEEEecCCCCcccC--cccCCCCCCCeeeccCCcCc
Q 003496          441 GLV--LPPL-----LSGLSSLTELHLTDCNITEIP--ADIGSLSSIVWLALSGNHFE  488 (815)
Q Consensus       441 ~~~--lp~~-----l~~l~~L~~L~Ls~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~  488 (815)
                      ...  .|+.     ...+++|++|++..|++.+++  ..+..+++|+.|.+..|.+.
T Consensus       283 i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  283 IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            433  3443     467899999999999998765  34666778888887777664

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.80  E-value=1.8e-09  Score=106.35  Aligned_cols=178  Identities=22%  Similarity=0.196  Sum_probs=106.8

Q ss_pred             ccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCccccCchhccCCCCcEEecCC-CCCCCccchhhhccc
Q 003496          328 STSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGD-CSELASLPEKLENLK  406 (815)
Q Consensus       328 p~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~-~~~~~~l~~~l~~l~  406 (815)
                      |-.+.-+++|+.+.++.|..-. +-.....-|.|+++.+.++.+...|..+. ...+....... ....+..-..+...+
T Consensus       207 ~f~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~~~~l~p-e~~~~D~~~~E~~t~~G~~~~~~dTWq  284 (490)
T KOG1259|consen  207 SFNLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQDVPSLLP-ETILADPSGSEPSTSNGSALVSADTWQ  284 (490)
T ss_pred             ccchHHhhhhheeeeeccchhh-eeceeecCchhheeeeecccccccccccc-hhhhcCccCCCCCccCCceEEecchHh
Confidence            3334445667777776664321 11111123566777776666553332110 01111111100 001111222333456


Q ss_pred             cccccccccccCCCCCchhhhhcccceEEecCCCCccCCcccCCCCCCCEEEecCCCCcccCcccCCCCCCCeeeccCCc
Q 003496          407 SLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNH  486 (815)
Q Consensus       407 ~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~  486 (815)
                      .|+.+++++|.+..+.+++.-.+.++.|+++.|....+.. +..+++|+.|+|++|.++++-.+-..+-+.++|.|++|.
T Consensus       285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~  363 (490)
T KOG1259|consen  285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK  363 (490)
T ss_pred             hhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence            7788888888888887788888888888888887666655 777888888888888877755554556677777888887


Q ss_pred             CccCchhhhccCCcceecccccc
Q 003496          487 FERLPTSVKQLSQLRYLHLSNCN  509 (815)
Q Consensus       487 l~~lp~~l~~l~~L~~L~l~~c~  509 (815)
                      +.++. +++.+.+|..||+++|+
T Consensus       364 iE~LS-GL~KLYSLvnLDl~~N~  385 (490)
T KOG1259|consen  364 IETLS-GLRKLYSLVNLDLSSNQ  385 (490)
T ss_pred             Hhhhh-hhHhhhhheeccccccc
Confidence            77776 67777788888888775

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.71  E-value=2.6e-09  Score=105.16  Aligned_cols=125  Identities=26%  Similarity=0.328  Sum_probs=80.3

Q ss_pred             ccCCEEeccCCCccccCchhccCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCCCchhhhhcccceEEecC
Q 003496          359 EHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSG  438 (815)
Q Consensus       359 ~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~  438 (815)
                      ..|++++|++|.|+.+..++.-+|.++.|+++.|.....-  .+..+++|+.|++++|.+..+..+-..+-+++.|.+  
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L--  359 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL--  359 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh--
Confidence            5678888888888888888888888888888887655432  266677777777777776665554444444444444  


Q ss_pred             CCCccCCcccCCCCCCCEEEecCCCCcccCcccCCCCCCCeeeccCCcCccCc--hhhhccCCcceecccccc
Q 003496          439 CRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLP--TSVKQLSQLRYLHLSNCN  509 (815)
Q Consensus       439 ~~~~~lp~~l~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~l~~c~  509 (815)
                                           +.|.+.++ +.++.+-+|..||+++|++..+.  .+++++|.|++|.+.+|+
T Consensus       360 ---------------------a~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  360 ---------------------AQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             ---------------------hhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence                                 44444332 23445556666666666665443  356667777777777666

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.67  E-value=5.4e-08  Score=103.60  Aligned_cols=57  Identities=19%  Similarity=0.414  Sum_probs=36.3

Q ss_pred             HhccccCCEEeccCCCccccCchhccCCCCcEEecCCCCCCCccchhhhccccccccccccc
Q 003496          355 LEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFS  416 (815)
Q Consensus       355 l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~  416 (815)
                      +..+.+++.|++++|.++.+|.   -.++|+.|.+++|..+..+|..+  .++|+.|.+++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            3445677777887777777772   23468888888887777666533  134444444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.62  E-value=1.3e-08  Score=96.88  Aligned_cols=125  Identities=21%  Similarity=0.175  Sum_probs=41.5

Q ss_pred             ccCCceEEEEeCCCCCCccccCcccccCCCCC-CCCcCcceEEeCCCCCCCCCCCCCCccceeeecCCCCcccccccc-c
Q 003496          117 NMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLR-YLPEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGK-K  194 (815)
Q Consensus       117 ~~~~Lr~L~l~~~~l~~~~~~~~~~~l~~~l~-~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~lp~~~-~  194 (815)
                      +...+|.|++.+|.++         .+ +++. .+ .+|+.|++++|.++.++..-.+++|++|++++|.|+.+.+++ .
T Consensus        17 n~~~~~~L~L~~n~I~---------~I-e~L~~~l-~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~   85 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS---------TI-ENLGATL-DKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDK   85 (175)
T ss_dssp             -----------------------------S--TT--TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHH
T ss_pred             cccccccccccccccc---------cc-cchhhhh-cCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHH
Confidence            4446677777777664         22 2343 23 377788888888777765447778888888888888776554 3


Q ss_pred             CCCCccEEecCCCCCCCc--CCCCCCCCCCcEEecCCCCCCCCc---ccccCCCCcccEEecC
Q 003496          195 QAFKLKFIDLHHSQYLTK--IPDLVETPNLERINLLNCTNLPYI---SSSIQNFNNLSVLSLA  252 (815)
Q Consensus       195 ~l~~L~~L~L~~~~~~~~--~p~l~~l~~L~~L~L~~~~~~~~~---~~~l~~l~~L~~L~l~  252 (815)
                      .+++|+.|+|++|++...  +-.+..+++|+.|++.+|.....-   ...+..+++|+.||-.
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            577888888887775332  224556677777777776544221   1123455666666543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.62  E-value=7.4e-09  Score=104.78  Aligned_cols=176  Identities=20%  Similarity=0.176  Sum_probs=95.1

Q ss_pred             CCCCCEEeeCCCcCCCCccHH----HhccccCCEEeccCCCccccC--------------chhccCCCCcEEecCCCCCC
Q 003496          334 LKSLCWLELGGCSNLETFPEI----LEKMEHLLEIDLRETAIRNLP--------------SSIEYLEGLRKLDLGDCSEL  395 (815)
Q Consensus       334 l~~L~~L~Ls~~~~~~~~p~~----l~~l~~L~~L~L~~~~l~~lp--------------~~l~~l~~L~~L~L~~~~~~  395 (815)
                      .++|++|+||.|......+..    +..+..|++|.|.+|.+....              .-...-+.|+++....|..-
T Consensus        91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen   91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence            345555555555443333222    233445555555555544111              11233445555555554322


Q ss_pred             C----ccchhhhccccccccccccccCCCC-----CchhhhhcccceEEecCCCCc-----cCCcccCCCCCCCEEEecC
Q 003496          396 A----SLPEKLENLKSLKYLNAEFSAIGQL-----PSSISDLNQLKKLKFSGCRGL-----VLPPLLSGLSSLTELHLTD  461 (815)
Q Consensus       396 ~----~l~~~l~~l~~L~~L~l~~~~~~~~-----p~~l~~l~~L~~L~l~~~~~~-----~lp~~l~~l~~L~~L~Ls~  461 (815)
                      .    .+-..+...+.|+.+.+..|.+..-     ...+..+++|+.|++.+|...     .+...+..+++|+.|++++
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d  250 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD  250 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence            1    1222344445555555555554322     234555666666666666532     2333456677888888888


Q ss_pred             CCCcc-----cCcc-cCCCCCCCeeeccCCcCc-----cCchhhhccCCcceecccccc
Q 003496          462 CNITE-----IPAD-IGSLSSIVWLALSGNHFE-----RLPTSVKQLSQLRYLHLSNCN  509 (815)
Q Consensus       462 ~~l~~-----lp~~-l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~l~~c~  509 (815)
                      |.+..     +-.. -...|+|+.|.+.+|.++     .+-..+...+.|+.|+|++|.
T Consensus       251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            87764     1111 234688888888888776     233455667888888888886

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.57  E-value=1e-08  Score=103.79  Aligned_cols=107  Identities=23%  Similarity=0.248  Sum_probs=62.7

Q ss_pred             ccceEEEecCcccc-----ccchhhhccCCCCEEeccCCcCccc----cccccCCCCCCCEEeeCCCcCCCCccHH----
Q 003496          288 GNIIELRLWNTRIE-----EVPSSIECLTNLETLDLSFCKRLKR----VSTSICKLKSLCWLELGGCSNLETFPEI----  354 (815)
Q Consensus       288 ~~L~~L~l~~~~i~-----~lp~~l~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~Ls~~~~~~~~p~~----  354 (815)
                      +.++.+++..|.|.     .+-..+..+++|+.|||++|.+...    +...+..+++|+.|++++|.....-...    
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a  264 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA  264 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence            34455555555443     3445678889999999999887653    4445666788888888888654332221    


Q ss_pred             H-hccccCCEEeccCCCcc-----ccCchhccCCCCcEEecCCCCC
Q 003496          355 L-EKMEHLLEIDLRETAIR-----NLPSSIEYLEGLRKLDLGDCSE  394 (815)
Q Consensus       355 l-~~l~~L~~L~L~~~~l~-----~lp~~l~~l~~L~~L~L~~~~~  394 (815)
                      + ...++|+.|.+.+|.++     .+-..+...+.|..|+|++|..
T Consensus       265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  265 LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            2 22456666666666665     1222333345555555555543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.54  E-value=6.7e-08  Score=91.99  Aligned_cols=105  Identities=27%  Similarity=0.358  Sum_probs=36.8

Q ss_pred             ccccccccccccCCCCCchhh-hhcccceEEecCCCCccCCcccCCCCCCCEEEecCCCCcccCccc-CCCCCCCeeecc
Q 003496          406 KSLKYLNAEFSAIGQLPSSIS-DLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADI-GSLSSIVWLALS  483 (815)
Q Consensus       406 ~~L~~L~l~~~~~~~~p~~l~-~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~~~l~~lp~~l-~~l~~L~~L~Ls  483 (815)
                      ..++.|++.++.+..+. .++ .+.+|+.|++++|....+. .+..++.|+.|++++|.++.++..+ ..+++|++|+++
T Consensus        19 ~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~   96 (175)
T PF14580_consen   19 VKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS   96 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred             ccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence            34455555555555442 233 3555666666666655554 3667788888888888888876554 357888888888


Q ss_pred             CCcCccCc--hhhhccCCcceeccccccccc
Q 003496          484 GNHFERLP--TSVKQLSQLRYLHLSNCNMLQ  512 (815)
Q Consensus       484 ~n~l~~lp--~~l~~l~~L~~L~l~~c~~L~  512 (815)
                      +|++..+.  ..+..+++|+.|++.+|+.-.
T Consensus        97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             TS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             CCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            88887443  356778888888888887543

>PLN03150 hypothetical protein; Provisional

Probab=98.32  E-value=1.1e-06  Score=102.23  Aligned_cols=107  Identities=21%  Similarity=0.220  Sum_probs=79.5

Q ss_pred             cceeeecCCCCccc-ccccccCCCCccEEecCCCCCCCcCC-CCCCCCCCcEEecCCCCCCCCcccccCCCCcccEEecC
Q 003496          175 NLIELNLPYSNVEQ-IWEGKKQAFKLKFIDLHHSQYLTKIP-DLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLA  252 (815)
Q Consensus       175 ~L~~L~L~~~~i~~-lp~~~~~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~  252 (815)
                      .++.|+|+++.+.. +|..+..+++|+.|+|++|.+...+| .++.+++|+.|+|++|...+.+|..++++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36778888887775 67778888888888888888777777 57778888888888887777788888888888888888


Q ss_pred             CCCCCcccCCccc--CCCCcEEEecCCCCCC
Q 003496          253 GCRSLVSFPRNIY--FRSPIAVDFSDCVNLT  281 (815)
Q Consensus       253 ~~~~l~~lp~~~~--l~~L~~L~l~~~~~l~  281 (815)
                      +|.....+|..+.  ..++..+++.+|..+.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCcccc
Confidence            8777777776654  3455566666665443

>PLN03150 hypothetical protein; Provisional

Probab=98.26  E-value=2.4e-06  Score=99.48  Aligned_cols=106  Identities=25%  Similarity=0.256  Sum_probs=81.3

Q ss_pred             CCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCcc-ccCchhccCCCCcEEecC
Q 003496          312 NLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIR-NLPSSIEYLEGLRKLDLG  390 (815)
Q Consensus       312 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~L~  390 (815)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|...+.+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            3667788888777778888888888888888888777778877888888888888888776 677778888888888888


Q ss_pred             CCCCCCccchhhhcc-cccccccccccc
Q 003496          391 DCSELASLPEKLENL-KSLKYLNAEFSA  417 (815)
Q Consensus       391 ~~~~~~~l~~~l~~l-~~L~~L~l~~~~  417 (815)
                      +|...+.+|..+..+ .++..+++.+|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCc
Confidence            888777888776653 355666666664

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.21  E-value=1e-06  Score=68.67  Aligned_cols=58  Identities=38%  Similarity=0.631  Sum_probs=47.5

Q ss_pred             CCCCEEEecCCCCcccC-cccCCCCCCCeeeccCCcCccCch-hhhccCCcceecccccc
Q 003496          452 SSLTELHLTDCNITEIP-ADIGSLSSIVWLALSGNHFERLPT-SVKQLSQLRYLHLSNCN  509 (815)
Q Consensus       452 ~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~l~~c~  509 (815)
                      |+|++|++++|+++.+| ..+..+++|++|++++|.++.+|. .+..+++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            46888888888888877 457888888888888888887764 56888888888888885

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=6.7e-08  Score=95.52  Aligned_cols=62  Identities=23%  Similarity=0.278  Sum_probs=42.6

Q ss_pred             cceEEEecCcccc--ccchhhhccCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCC
Q 003496          289 NIIELRLWNTRIE--EVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLET  350 (815)
Q Consensus       289 ~L~~L~l~~~~i~--~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~  350 (815)
                      .++++++++..|+  .+..-+..+.+|+.|.|.+..+...+-..+++-.+|+.|+|++|+....
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~  249 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE  249 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch
Confidence            4566666666666  4445567777888888887777777766777777777777777765544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.19  E-value=1.6e-06  Score=67.55  Aligned_cols=56  Identities=25%  Similarity=0.394  Sum_probs=40.5

Q ss_pred             CcceEEeCCCCCCCCCCC-C-CCccceeeecCCCCcccccc-cccCCCCccEEecCCCC
Q 003496          153 ELRYLHWHQYSLKTLPLN-F-DPENLIELNLPYSNVEQIWE-GKKQAFKLKFIDLHHSQ  208 (815)
Q Consensus       153 ~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~  208 (815)
                      +|++|++++|.++.+|.. | .+++|++|++++|.++.++. .+..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            677777777777777753 3 67777777777777777654 56777777777777765

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=4e-08  Score=97.06  Aligned_cols=157  Identities=22%  Similarity=0.232  Sum_probs=97.4

Q ss_pred             cceeeecCCCCccc--ccccccCCCCccEEecCCCCCCCcCC-CCCCCCCCcEEecCCCCCCCCcc--cccCCCCcccEE
Q 003496          175 NLIELNLPYSNVEQ--IWEGKKQAFKLKFIDLHHSQYLTKIP-DLVETPNLERINLLNCTNLPYIS--SSIQNFNNLSVL  249 (815)
Q Consensus       175 ~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~--~~l~~l~~L~~L  249 (815)
                      .|++|||+.+.|+.  +-.-++.+.+|+.|.|.++++...+. .+.+-.+|+.|+++.|....+..  --+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            48888888888875  44456788888888888887665544 47777888888888876554332  224677788888


Q ss_pred             ecCCCCCCcccCC-ccc--CCCCcEEEecCCCCCCccCCCcccceEEEecCccccccchhhhccCCCCEEeccCCcCcc-
Q 003496          250 SLAGCRSLVSFPR-NIY--FRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLK-  325 (815)
Q Consensus       250 ~l~~~~~l~~lp~-~~~--l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~-  325 (815)
                      +++.|......-. .+.  -+.|+.|+++|+...-.                 ...+..-...+++|..|||++|..+. 
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~-----------------~sh~~tL~~rcp~l~~LDLSD~v~l~~  328 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ-----------------KSHLSTLVRRCPNLVHLDLSDSVMLKN  328 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh-----------------hhHHHHHHHhCCceeeeccccccccCc
Confidence            8887765433211 111  34555555555542110                 11222234567888888888775443 


Q ss_pred             ccccccCCCCCCCEEeeCCCcCC
Q 003496          326 RVSTSICKLKSLCWLELGGCSNL  348 (815)
Q Consensus       326 ~lp~~l~~l~~L~~L~Ls~~~~~  348 (815)
                      .....+.+++.|++|.++.|..+
T Consensus       329 ~~~~~~~kf~~L~~lSlsRCY~i  351 (419)
T KOG2120|consen  329 DCFQEFFKFNYLQHLSLSRCYDI  351 (419)
T ss_pred             hHHHHHHhcchheeeehhhhcCC
Confidence            33344566777777777777643

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.08  E-value=1.7e-05  Score=84.84  Aligned_cols=57  Identities=21%  Similarity=0.331  Sum_probs=35.0

Q ss_pred             hhccCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCC
Q 003496          307 IECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRET  369 (815)
Q Consensus       307 l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~  369 (815)
                      +..+.+++.|++++| .+..+|.   -..+|+.|.+++|..+..+|..+.  ++|+.|.+.+|
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence            445677888888877 4555552   234578888887777766665432  34555555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.07  E-value=5.4e-07  Score=100.21  Aligned_cols=166  Identities=20%  Similarity=0.228  Sum_probs=68.5

Q ss_pred             CcceEEeCCCCCCCCCCCC-CCccceeeecCCCCcccccccccCCCCccEEecCCCCCCCcCCCCCCCCCCcEEecCCCC
Q 003496          153 ELRYLHWHQYSLKTLPLNF-DPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCT  231 (815)
Q Consensus       153 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~  231 (815)
                      +|.+|++.+|.++.+.... .+.+|++|++++|.|+.+ .++..++.|+.|++++|. +..++.+..+++|+.+++++|.
T Consensus        96 ~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l~l~~n~  173 (414)
T KOG0531|consen   96 SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNL-ISDISGLESLKSLKLLDLSYNR  173 (414)
T ss_pred             ceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCc-chhccCCccchhhhcccCCcch
Confidence            4444444444444444422 444555555555555544 233444445555555544 2333344444445555554443


Q ss_pred             CCCCcc-cccCCCCcccEEecCCCCCCcccCCcccCCCCcEEEecCCCCCC--ccCCCcc-cceEEEecCccccccchhh
Q 003496          232 NLPYIS-SSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLT--EFPLVSG-NIIELRLWNTRIEEVPSSI  307 (815)
Q Consensus       232 ~~~~~~-~~l~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~--~l~~~~~-~L~~L~l~~~~i~~lp~~l  307 (815)
                      ....-+ . +..+.+|+.+.+.++..... ...-.+..+..+++..+....  .++.... .++.+++.++.+..++..+
T Consensus       174 i~~ie~~~-~~~~~~l~~l~l~~n~i~~i-~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~  251 (414)
T KOG0531|consen  174 IVDIENDE-LSELISLEELDLGGNSIREI-EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPEGL  251 (414)
T ss_pred             hhhhhhhh-hhhccchHHHhccCCchhcc-cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccccc
Confidence            322111 1 23444444444444322110 000001111111222221111  1111100 2455666666666655555


Q ss_pred             hccCCCCEEeccCCc
Q 003496          308 ECLTNLETLDLSFCK  322 (815)
Q Consensus       308 ~~l~~L~~L~L~~~~  322 (815)
                      ..+.++..|++.++.
T Consensus       252 ~~~~~l~~l~~~~n~  266 (414)
T KOG0531|consen  252 ENLKNLPVLDLSSNR  266 (414)
T ss_pred             cccccccccchhhcc
Confidence            666666666666554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.02  E-value=1.3e-06  Score=97.28  Aligned_cols=122  Identities=26%  Similarity=0.237  Sum_probs=53.8

Q ss_pred             ecCccccccchhhhccCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCcccc
Q 003496          295 LWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNL  374 (815)
Q Consensus       295 l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~~l  374 (815)
                      +..+.++.+-..+..+++|..|++.++.+.+... .+..+++|++|++++|.....-  .+..++.|+.|++.+|.+..+
T Consensus        79 l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~  155 (414)
T KOG0531|consen   79 LRQNLIAKILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI  155 (414)
T ss_pred             cchhhhhhhhcccccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheeccCcchhc
Confidence            3333343333334445555555555544332211 1334455555555554433221  133344455555555555544


Q ss_pred             CchhccCCCCcEEecCCCCCCCccc-hhhhccccccccccccccCCCC
Q 003496          375 PSSIEYLEGLRKLDLGDCSELASLP-EKLENLKSLKYLNAEFSAIGQL  421 (815)
Q Consensus       375 p~~l~~l~~L~~L~L~~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~  421 (815)
                      .. +..+++|+.+++++|.....-+ . ...+.+|+.+.+.+|.+..+
T Consensus       156 ~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  156 SG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI  201 (414)
T ss_pred             cC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence            32 2225555555555554333222 1 34455555555555554433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.96  E-value=3.6e-07  Score=94.76  Aligned_cols=15  Identities=27%  Similarity=0.567  Sum_probs=8.6

Q ss_pred             cCCCCcEEecCCCCC
Q 003496          380 YLEGLRKLDLGDCSE  394 (815)
Q Consensus       380 ~l~~L~~L~L~~~~~  394 (815)
                      +.++|+.|.+.+|+.
T Consensus       318 ~~~~L~~l~l~~c~~  332 (483)
T KOG4341|consen  318 HCHNLQVLELSGCQQ  332 (483)
T ss_pred             CCCceEEEeccccch
Confidence            445566666666554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.95  E-value=2.5e-07  Score=95.92  Aligned_cols=88  Identities=25%  Similarity=0.309  Sum_probs=50.2

Q ss_pred             ccCCCCEEeccCCcCcccccc-c-cCCCCCCCEEeeCCCcCCCCcc--HHHhccccCCEEeccCCCcc---ccCchhccC
Q 003496          309 CLTNLETLDLSFCKRLKRVST-S-ICKLKSLCWLELGGCSNLETFP--EILEKMEHLLEIDLRETAIR---NLPSSIEYL  381 (815)
Q Consensus       309 ~l~~L~~L~L~~~~~~~~lp~-~-l~~l~~L~~L~Ls~~~~~~~~p--~~l~~l~~L~~L~L~~~~l~---~lp~~l~~l  381 (815)
                      .+..|+.|+.++|...+..+- . ..+..+|+.|.+++|+.....-  ..-.+.+.|+.+++.++...   .+-..-.++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            466777787777776544332 1 2356777788887777543221  12234566777776666443   222333456


Q ss_pred             CCCcEEecCCCCCCC
Q 003496          382 EGLRKLDLGDCSELA  396 (815)
Q Consensus       382 ~~L~~L~L~~~~~~~  396 (815)
                      +.|+.|.++.|....
T Consensus       372 ~~lr~lslshce~it  386 (483)
T KOG4341|consen  372 PRLRVLSLSHCELIT  386 (483)
T ss_pred             chhccCChhhhhhhh
Confidence            666777666665443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=5.3e-06  Score=82.41  Aligned_cols=67  Identities=13%  Similarity=0.212  Sum_probs=52.7

Q ss_pred             CCCCCCEEEecCCCCcccC--cccCCCCCCCeeeccCCcCccCc--hhhhccCCcceecccccccccCCCC
Q 003496          450 GLSSLTELHLTDCNITEIP--ADIGSLSSIVWLALSGNHFERLP--TSVKQLSQLRYLHLSNCNMLQSLPE  516 (815)
Q Consensus       450 ~l~~L~~L~Ls~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~l~~c~~L~~lp~  516 (815)
                      -+|++..+-+..|.+....  .....++++..|+|+.+++.+..  +.+..+++|..|.+++++...++..
T Consensus       197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~  267 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG  267 (418)
T ss_pred             hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence            4677888888888777633  44667788889999999988543  4678899999999999998887764

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.82  E-value=1e-06  Score=97.16  Aligned_cols=196  Identities=23%  Similarity=0.238  Sum_probs=109.6

Q ss_pred             hccCCCCEEeccCCcCcccc-ccccCCCCCCCEEeeCCCcCCCCccHHHhcc-ccCCEEeccCCCccccCchh----cc-
Q 003496          308 ECLTNLETLDLSFCKRLKRV-STSICKLKSLCWLELGGCSNLETFPEILEKM-EHLLEIDLRETAIRNLPSSI----EY-  380 (815)
Q Consensus       308 ~~l~~L~~L~L~~~~~~~~l-p~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l-~~L~~L~L~~~~l~~lp~~l----~~-  380 (815)
                      .-+++++.|.+-.-..-+.. |-.|..+.+|++|.+.+|.....  ..+..+ ..|+.|-.. +.+..+-..+    +. 
T Consensus        81 d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~  157 (1096)
T KOG1859|consen   81 DFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDI  157 (1096)
T ss_pred             HHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhcccc
Confidence            34556666665544333322 66788889999999999876541  111111 123333221 1111111100    00 


Q ss_pred             -----CCCCcEEecCCCCCCCccchhhhccccccccccccccCCCCCchhhhhcccceEEecCCCCccCCcccCCCCCCC
Q 003496          381 -----LEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLT  455 (815)
Q Consensus       381 -----l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~  455 (815)
                           ...|...+.+. +.+..+..++.-++.|+.|+++.|.+.... .+..++.|+.|+|+.|....+|..-..-..|.
T Consensus       158 ~ns~~Wn~L~~a~fsy-N~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~  235 (1096)
T KOG1859|consen  158 SNSPVWNKLATASFSY-NRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQ  235 (1096)
T ss_pred             ccchhhhhHhhhhcch-hhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhhe
Confidence                 11233333332 334555566677777777777777777664 66777777777777777666665333333477


Q ss_pred             EEEecCCCCcccCcccCCCCCCCeeeccCCcCccCc--hhhhccCCcceecccccc
Q 003496          456 ELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLP--TSVKQLSQLRYLHLSNCN  509 (815)
Q Consensus       456 ~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~l~~c~  509 (815)
                      .|.|+||.++++ .++.++.+|+.||++.|-+....  .-+..|..|+.|.|.+|+
T Consensus       236 ~L~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  236 LLNLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             eeeecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            777777776664 23566777777777777554221  134556677777777776

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.78  E-value=2.5e-05  Score=55.76  Aligned_cols=40  Identities=30%  Similarity=0.551  Sum_probs=26.0

Q ss_pred             CCCCEEEecCCCCcccCcccCCCCCCCeeeccCCcCccCc
Q 003496          452 SSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLP  491 (815)
Q Consensus       452 ~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp  491 (815)
                      ++|++|++++|+++++|..++++++|+.|++++|.++++|
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            3567777777777777666677777777777777666554

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.74  E-value=1.5e-06  Score=95.92  Aligned_cols=181  Identities=23%  Similarity=0.246  Sum_probs=124.7

Q ss_pred             chhhhccCCCCEEeccCCcCccccccccCCC-CCCCEEeeCCCcCCCCccHHHhc----------cccCCEEeccCCCcc
Q 003496          304 PSSIECLTNLETLDLSFCKRLKRVSTSICKL-KSLCWLELGGCSNLETFPEILEK----------MEHLLEIDLRETAIR  372 (815)
Q Consensus       304 p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l-~~L~~L~Ls~~~~~~~~p~~l~~----------l~~L~~L~L~~~~l~  372 (815)
                      |-.|..+..|+.|.+.+|.+...  ..+..+ ..|++|.-.+.  +..+-..+..          --.|.+.+.+.|.+.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~S--l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNS--LDALRHVFASCGGDISNSPVWNKLATASFSYNRLV  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhcc--HHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence            56677888999999999876531  111111 13444432221  1111111110          124677788888888


Q ss_pred             ccCchhccCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCCCchhhhhcccceEEecCCCCccCCcccCCCC
Q 003496          373 NLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLS  452 (815)
Q Consensus       373 ~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~  452 (815)
                      .+-.++.-++.|+.|+|+.|+....-  .+..++.|+.||+++|.+..+|..-..-..|..|.+++|...++- .+.++.
T Consensus       178 ~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~-gie~Lk  254 (1096)
T KOG1859|consen  178 LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR-GIENLK  254 (1096)
T ss_pred             hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh-hHHhhh
Confidence            88889999999999999998876543  678889999999999999888743322223889999888754443 477889


Q ss_pred             CCCEEEecCCCCcccC--cccCCCCCCCeeeccCCcCccCc
Q 003496          453 SLTELHLTDCNITEIP--ADIGSLSSIVWLALSGNHFERLP  491 (815)
Q Consensus       453 ~L~~L~Ls~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp  491 (815)
                      +|+.||++.|-|.+..  ..+..+.+|+.|.|.||.+-.-|
T Consensus       255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            9999999999877632  33567788999999999876555

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.68  E-value=1.3e-05  Score=79.80  Aligned_cols=83  Identities=18%  Similarity=0.168  Sum_probs=48.2

Q ss_pred             CCccceeeecCCCCccc---ccccccCCCCccEEecCCCCCCCcCCCC-CCCCCCcEEecCCCCCC-CCcccccCCCCcc
Q 003496          172 DPENLIELNLPYSNVEQ---IWEGKKQAFKLKFIDLHHSQYLTKIPDL-VETPNLERINLLNCTNL-PYISSSIQNFNNL  246 (815)
Q Consensus       172 ~l~~L~~L~L~~~~i~~---lp~~~~~l~~L~~L~L~~~~~~~~~p~l-~~l~~L~~L~L~~~~~~-~~~~~~l~~l~~L  246 (815)
                      ...++++|||.+|.|+.   +-.-+.+++.|++|+|+.|.+...+..+ ....+|+.|.|.|.... ...-..+..++++
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            45566666666666664   2233466777777777777655444433 34566777777663322 2233445566666


Q ss_pred             cEEecCCC
Q 003496          247 SVLSLAGC  254 (815)
Q Consensus       247 ~~L~l~~~  254 (815)
                      +.|.++.|
T Consensus       149 telHmS~N  156 (418)
T KOG2982|consen  149 TELHMSDN  156 (418)
T ss_pred             hhhhhccc
Confidence            66666665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.56  E-value=5.5e-05  Score=53.98  Aligned_cols=35  Identities=20%  Similarity=0.263  Sum_probs=21.1

Q ss_pred             cceeeecCCCCcccccccccCCCCccEEecCCCCC
Q 003496          175 NLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQY  209 (815)
Q Consensus       175 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~  209 (815)
                      +|++|++++|+|+.+|..+.++++|++|++++|++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence            56666666666666665566666666666666653

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.54  E-value=1.6e-05  Score=92.43  Aligned_cols=128  Identities=22%  Similarity=0.205  Sum_probs=86.0

Q ss_pred             CcccEEecCCCCCC-cccCCccc--CCCCcEEEecCCCC----CCccCCCcccceEEEecCccccccchhhhccCCCCEE
Q 003496          244 NNLSVLSLAGCRSL-VSFPRNIY--FRSPIAVDFSDCVN----LTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETL  316 (815)
Q Consensus       244 ~~L~~L~l~~~~~l-~~lp~~~~--l~~L~~L~l~~~~~----l~~l~~~~~~L~~L~l~~~~i~~lp~~l~~l~~L~~L  316 (815)
                      .+|++|+++|.... ...|..++  +|+|+.|.+++-..    ...+...+++|..|++++++++.+ .+++++++|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            35555555553322 22333344  67777777766332    335667788899999999999988 889999999999


Q ss_pred             eccCCcCcc-ccccccCCCCCCCEEeeCCCcCCCCc--c----HHHhccccCCEEeccCCCcc
Q 003496          317 DLSFCKRLK-RVSTSICKLKSLCWLELGGCSNLETF--P----EILEKMEHLLEIDLRETAIR  372 (815)
Q Consensus       317 ~L~~~~~~~-~lp~~l~~l~~L~~L~Ls~~~~~~~~--p----~~l~~l~~L~~L~L~~~~l~  372 (815)
                      .+.+-.+.. ..-..+.+|++|+.|++|.-......  .    +.-..+|+|+.||.+++.+.
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            998755443 22335778999999999976554322  1    22234788888888888776

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.52  E-value=8.9e-06  Score=71.68  Aligned_cols=102  Identities=19%  Similarity=0.309  Sum_probs=69.5

Q ss_pred             ccccccccccCCCCCchh---hhhcccceEEecCCCCccCCcccC-CCCCCCEEEecCCCCcccCcccCCCCCCCeeecc
Q 003496          408 LKYLNAEFSAIGQLPSSI---SDLNQLKKLKFSGCRGLVLPPLLS-GLSSLTELHLTDCNITEIPADIGSLSSIVWLALS  483 (815)
Q Consensus       408 L~~L~l~~~~~~~~p~~l---~~l~~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls  483 (815)
                      +..++++.|.+..++...   .....|...++++|....+|..+. .++.++.|++++|.++++|..+..++.|+.|+++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~  108 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR  108 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence            444555566555453333   333345555667766666666543 4567888888888888888888888888888888


Q ss_pred             CCcCccCchhhhccCCcceecccccc
Q 003496          484 GNHFERLPTSVKQLSQLRYLHLSNCN  509 (815)
Q Consensus       484 ~n~l~~lp~~l~~l~~L~~L~l~~c~  509 (815)
                      .|.+...|.-+..|.+|-.|+..++.
T Consensus       109 ~N~l~~~p~vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen  109 FNPLNAEPRVIAPLIKLDMLDSPENA  134 (177)
T ss_pred             cCccccchHHHHHHHhHHHhcCCCCc
Confidence            88888888777777777777776654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.48  E-value=5.5e-05  Score=88.03  Aligned_cols=149  Identities=19%  Similarity=0.221  Sum_probs=86.7

Q ss_pred             ccCCEEeccCCCcc--ccCchhc-cCCCCcEEecCCCCCCC-ccchhhhccccccccccccccCCCCCchhhhhcccceE
Q 003496          359 EHLLEIDLRETAIR--NLPSSIE-YLEGLRKLDLGDCSELA-SLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKL  434 (815)
Q Consensus       359 ~~L~~L~L~~~~l~--~lp~~l~-~l~~L~~L~L~~~~~~~-~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L  434 (815)
                      .+|+.|++++...-  ..|..++ .||+|+.|.+.+-.... .+..-..++++|..||++++++..+ .+++++++|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            45666666654322  3333333 36777777776644322 2233345667777777777777766 667777777777


Q ss_pred             EecCCCCccCC--cccCCCCCCCEEEecCCCCcccC-------cccCCCCCCCeeeccCCcCc--cCchhhhccCCccee
Q 003496          435 KFSGCRGLVLP--PLLSGLSSLTELHLTDCNITEIP-------ADIGSLSSIVWLALSGNHFE--RLPTSVKQLSQLRYL  503 (815)
Q Consensus       435 ~l~~~~~~~lp--~~l~~l~~L~~L~Ls~~~l~~lp-------~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L  503 (815)
                      .+.+-......  ..+.++.+|+.||+|.......+       +.-..+|.|+.||.|+..+.  .+...+..-++|+.+
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i  280 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI  280 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence            77665543322  13556788888888876544322       22244788888888887665  223333445556555


Q ss_pred             ccccc
Q 003496          504 HLSNC  508 (815)
Q Consensus       504 ~l~~c  508 (815)
                      .+-+|
T Consensus       281 ~~~~~  285 (699)
T KOG3665|consen  281 AALDC  285 (699)
T ss_pred             hhhhh
Confidence            54443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.30  E-value=6.2e-05  Score=74.02  Aligned_cols=142  Identities=18%  Similarity=0.193  Sum_probs=76.7

Q ss_pred             ccccCCCCccEEecCCCCCCCcCC-----CCCCCCCCcEEecCCCCCCCCccccc-------------CCCCcccEEecC
Q 003496          191 EGKKQAFKLKFIDLHHSQYLTKIP-----DLVETPNLERINLLNCTNLPYISSSI-------------QNFNNLSVLSLA  252 (815)
Q Consensus       191 ~~~~~l~~L~~L~L~~~~~~~~~p-----~l~~l~~L~~L~L~~~~~~~~~~~~l-------------~~l~~L~~L~l~  252 (815)
                      ..+-++++|+..+||.|.+....|     -+++.++|.+|.+.+|..-..--..|             .+-+.|++....
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            345567777777777777665554     25667777777777765322111112             123444444443


Q ss_pred             CCCCCcccCCcccCCCCcEEEecCCCCCCccCCCcccceEEEecCccccc------cchhhhccCCCCEEeccCCcCccc
Q 003496          253 GCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEE------VPSSIECLTNLETLDLSFCKRLKR  326 (815)
Q Consensus       253 ~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~------lp~~l~~l~~L~~L~L~~~~~~~~  326 (815)
                      .|..- ..|...               +...-....+++.+.+..|.|..      +-..+.++++|+.|||.+|.++..
T Consensus       166 rNRle-ngs~~~---------------~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~  229 (388)
T COG5238         166 RNRLE-NGSKEL---------------SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE  229 (388)
T ss_pred             cchhc-cCcHHH---------------HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhh
Confidence            33210 000000               00011112356777777777761      122456788899999998876542


Q ss_pred             ----cccccCCCCCCCEEeeCCCcCC
Q 003496          327 ----VSTSICKLKSLCWLELGGCSNL  348 (815)
Q Consensus       327 ----lp~~l~~l~~L~~L~Ls~~~~~  348 (815)
                          +...++..+.|+.|.+..|-..
T Consensus       230 gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         230 GSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             hHHHHHHHhcccchhhhccccchhhc
Confidence                3334555666777777777544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.00  E-value=0.0014  Score=62.22  Aligned_cols=107  Identities=17%  Similarity=0.116  Sum_probs=66.3

Q ss_pred             CCCCCcCcceEEeCCCCCCCCCCCCCCccceeeecCCCCcccccccc-cCCCCccEEecCCCCCCCc--CCCCCCCCCCc
Q 003496          147 LRYLPEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGK-KQAFKLKFIDLHHSQYLTK--IPDLVETPNLE  223 (815)
Q Consensus       147 l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~lp~~~-~~l~~L~~L~L~~~~~~~~--~p~l~~l~~L~  223 (815)
                      ++...+..-.+|++.|.+..++..-.+.+|.+|.+.+|+|+.+-..+ ..+++|+.|.|.+|.+...  +-.+..+|.|+
T Consensus        37 lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   37 LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE  116 (233)
T ss_pred             ccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence            44444566777788887777666557778888888888888775554 4456678888877764322  33456677777


Q ss_pred             EEecCCCCCCCCcc---cccCCCCcccEEecCC
Q 003496          224 RINLLNCTNLPYIS---SSIQNFNNLSVLSLAG  253 (815)
Q Consensus       224 ~L~L~~~~~~~~~~---~~l~~l~~L~~L~l~~  253 (815)
                      +|.+-+|.....-.   -.+..+++|++|++.+
T Consensus       117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            77777765432111   1234455555555544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.00  E-value=0.0012  Score=62.66  Aligned_cols=122  Identities=16%  Similarity=0.194  Sum_probs=82.0

Q ss_pred             ceEEeCCCCCCCCCCC-CCCccceeeecCCCCcccccccccCCCCccEEecCCCCCCCcCCCCCC-CCCCcEEecCCCCC
Q 003496          155 RYLHWHQYSLKTLPLN-FDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVE-TPNLERINLLNCTN  232 (815)
Q Consensus       155 r~L~l~~~~l~~lp~~-~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~p~l~~-l~~L~~L~L~~~~~  232 (815)
                      |.+++.++.+..+-.. ..+.+...+||+.|.+..+ ..+..+++|.+|.|++|++...-|.+.. +++|..|.|.+|..
T Consensus        22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi  100 (233)
T KOG1644|consen   22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI  100 (233)
T ss_pred             cccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence            4444555443322221 1566778899999988876 4577888999999999998887787764 57899999988754


Q ss_pred             CCCcc--cccCCCCcccEEecCCCCCCcccCCc---c-cCCCCcEEEecCCC
Q 003496          233 LPYIS--SSIQNFNNLSVLSLAGCRSLVSFPRN---I-YFRSPIAVDFSDCV  278 (815)
Q Consensus       233 ~~~~~--~~l~~l~~L~~L~l~~~~~l~~lp~~---~-~l~~L~~L~l~~~~  278 (815)
                      . .+.  .-+..+++|++|.+-+|.....----   + .+++|+.||+++-.
T Consensus       101 ~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  101 Q-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             h-hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            3 221  23566788999988887643221111   1 27889999988754

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.99  E-value=0.00022  Score=70.31  Aligned_cols=87  Identities=21%  Similarity=0.251  Sum_probs=44.2

Q ss_pred             hhccCCCCEEeccCCcCccccc----cccCCCCCCCEEeeCCCcCC---CCcc-------HHHhccccCCEEeccCCCcc
Q 003496          307 IECLTNLETLDLSFCKRLKRVS----TSICKLKSLCWLELGGCSNL---ETFP-------EILEKMEHLLEIDLRETAIR  372 (815)
Q Consensus       307 l~~l~~L~~L~L~~~~~~~~lp----~~l~~l~~L~~L~Ls~~~~~---~~~p-------~~l~~l~~L~~L~L~~~~l~  372 (815)
                      +.-+..++.++|++|.+...-.    ..|.+-.+|+..+++.-...   ..++       ..+-+||.|+..+|+.|.+.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            4446667777777776655433    33444556666665542111   1122       23445566666666666554


Q ss_pred             -ccCc----hhccCCCCcEEecCCCC
Q 003496          373 -NLPS----SIEYLEGLRKLDLGDCS  393 (815)
Q Consensus       373 -~lp~----~l~~l~~L~~L~L~~~~  393 (815)
                       ..|.    .+..-+.|..|.+++|.
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnG  131 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNG  131 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCC
Confidence             2332    23344555555555554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.82  E-value=0.00014  Score=64.40  Aligned_cols=64  Identities=22%  Similarity=0.461  Sum_probs=27.6

Q ss_pred             cccCCEEeccCCCccccCchhcc-CCCCcEEecCCCCCCCccchhhhccccccccccccccCCCCC
Q 003496          358 MEHLLEIDLRETAIRNLPSSIEY-LEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLP  422 (815)
Q Consensus       358 l~~L~~L~L~~~~l~~lp~~l~~-l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p  422 (815)
                      ...|...+|++|.+..+|..+.. ++.++.|++.+|. +..+|..+..++.|+.|++++|.+...|
T Consensus        52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~l~~~p  116 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNPLNAEP  116 (177)
T ss_pred             CceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCccccch
Confidence            33444455555555555544332 2344444444432 2233333444444444444444443333

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.54  E-value=0.0021  Score=63.72  Aligned_cols=106  Identities=24%  Similarity=0.280  Sum_probs=71.2

Q ss_pred             ccceEEecCCCCccCCcccCCCCCCCEEEecCC--CCcc-cCcccCCCCCCCeeeccCCcCc---cCchhhhccCCccee
Q 003496          430 QLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDC--NITE-IPADIGSLSSIVWLALSGNHFE---RLPTSVKQLSQLRYL  503 (815)
Q Consensus       430 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~~--~l~~-lp~~l~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L  503 (815)
                      .|+.+++.++...++ ..+..+++|++|.++.|  .+.. ++.....+++|++|++++|++.   +++ .+..+.+|..|
T Consensus        44 ~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~L  121 (260)
T KOG2739|consen   44 ELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSL  121 (260)
T ss_pred             chhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhh
Confidence            344444444433222 23556788999999999  4443 5555566799999999999876   343 46778889999


Q ss_pred             cccccccccCC------CCcccccceeccccccccCCCCC
Q 003496          504 HLSNCNMLQSL------PELPIYLVYLEAKNCKRLQTLPE  537 (815)
Q Consensus       504 ~l~~c~~L~~l------p~l~~sL~~L~i~~C~~L~~l~~  537 (815)
                      ++.+|.-.+--      ..+.++|++|+-.++..-+....
T Consensus       122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~~  161 (260)
T KOG2739|consen  122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPEA  161 (260)
T ss_pred             hcccCCccccccHHHHHHHHhhhhccccccccCCcccccc
Confidence            99999866511      12567788888877776665543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.23  E-value=0.0011  Score=75.81  Aligned_cols=17  Identities=41%  Similarity=0.683  Sum_probs=9.2

Q ss_pred             cCCCCCCCEEEecCCCC
Q 003496          448 LSGLSSLTELHLTDCNI  464 (815)
Q Consensus       448 l~~l~~L~~L~Ls~~~l  464 (815)
                      ...++.|+.+.|..|..
T Consensus       358 ~~~~~~l~~~~l~~~~~  374 (482)
T KOG1947|consen  358 LRSCPKLTDLSLSYCGI  374 (482)
T ss_pred             HhcCCCcchhhhhhhhc
Confidence            34455556666655553

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.91  E-value=0.0015  Score=74.47  Aligned_cols=110  Identities=25%  Similarity=0.316  Sum_probs=58.2

Q ss_pred             ccCCCCEEeccCCcCccc--cccccCCCCCCCEEeeCCC-cCCCCcc----HHHhccccCCEEeccCCC-ccccC--chh
Q 003496          309 CLTNLETLDLSFCKRLKR--VSTSICKLKSLCWLELGGC-SNLETFP----EILEKMEHLLEIDLRETA-IRNLP--SSI  378 (815)
Q Consensus       309 ~l~~L~~L~L~~~~~~~~--lp~~l~~l~~L~~L~Ls~~-~~~~~~p----~~l~~l~~L~~L~L~~~~-l~~lp--~~l  378 (815)
                      .++.|+.|.+.+|.....  +-......++|+.|++++| ......+    .....+++|+.|+++.+. ++...  ...
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            356777777777655554  3344556677777777763 2222211    233445666777776665 43221  112


Q ss_pred             ccCCCCcEEecCCCCCCC--ccchhhhccccccccccccccC
Q 003496          379 EYLEGLRKLDLGDCSELA--SLPEKLENLKSLKYLNAEFSAI  418 (815)
Q Consensus       379 ~~l~~L~~L~L~~~~~~~--~l~~~l~~l~~L~~L~l~~~~~  418 (815)
                      ..+++|+.|.+.+|....  .+-.....++.|+.|++++|..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            236677777766666421  1222334456666666665544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.67  E-value=0.0048  Score=61.22  Aligned_cols=101  Identities=23%  Similarity=0.216  Sum_probs=47.8

Q ss_pred             CcceEEeCCCCCCCCCCCCCCccceeeecCCC--Cccc-ccccccCCCCccEEecCCCCCC--CcCCCCCCCCCCcEEec
Q 003496          153 ELRYLHWHQYSLKTLPLNFDPENLIELNLPYS--NVEQ-IWEGKKQAFKLKFIDLHHSQYL--TKIPDLVETPNLERINL  227 (815)
Q Consensus       153 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~--~i~~-lp~~~~~l~~L~~L~L~~~~~~--~~~p~l~~l~~L~~L~L  227 (815)
                      .|..|++.+..++++-..-.+++|+.|.++.|  ++.. ++.-...+++|++|++++|++.  ..++.+..+.||..|++
T Consensus        44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl  123 (260)
T KOG2739|consen   44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL  123 (260)
T ss_pred             chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhc
Confidence            33344444443333333224556666666666  3332 3333444466666666666543  22334555566666666


Q ss_pred             CCCCCCCCcc---cccCCCCcccEEecCC
Q 003496          228 LNCTNLPYIS---SSIQNFNNLSVLSLAG  253 (815)
Q Consensus       228 ~~~~~~~~~~---~~l~~l~~L~~L~l~~  253 (815)
                      .+|..+...-   ..+.-+++|++|+-..
T Consensus       124 ~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  124 FNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             ccCCccccccHHHHHHHHhhhhccccccc
Confidence            6655432110   1123345555555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.44  E-value=0.0019  Score=64.06  Aligned_cols=99  Identities=25%  Similarity=0.216  Sum_probs=69.9

Q ss_pred             cCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCccccCc--hhccCCCCcEE
Q 003496          310 LTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPS--SIEYLEGLRKL  387 (815)
Q Consensus       310 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L  387 (815)
                      +.+.++|+..+|.+...  ....+++.|++|.|+-|.....  ..+..+++|++|+|..|.|.++..  .+.++|+|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            45566666666654321  1133678888888888765543  346788999999999999987753  57889999999


Q ss_pred             ecCCCCCCCccch-----hhhccccccccc
Q 003496          388 DLGDCSELASLPE-----KLENLKSLKYLN  412 (815)
Q Consensus       388 ~L~~~~~~~~l~~-----~l~~l~~L~~L~  412 (815)
                      .|..|+-.+.-+.     .+.-||+|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            9998887776554     345677777765

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.24  E-value=0.097  Score=47.40  Aligned_cols=105  Identities=23%  Similarity=0.317  Sum_probs=52.3

Q ss_pred             eccccccccCCceEEEEeCCCCCCccccCcccccCCCCCCCCcCcceEEeCCCCCCCCCCCC--CCccceeeecCCCCcc
Q 003496          110 LDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNF--DPENLIELNLPYSNVE  187 (815)
Q Consensus       110 l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~  187 (815)
                      +...+|.++.+|+.+.+.. .+         ..++...+.-..+|+.+++..+ +..++...  ++..|+.+.+.. .+.
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~---------~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~   70 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TI---------KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK   70 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T-----------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-
T ss_pred             ECHHHHhCCCCCCEEEECC-Ce---------eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc
Confidence            5567888888888888753 22         2455544333347788887764 66666543  666777777765 555


Q ss_pred             cccc-cccCCCCccEEecCCCCCCCcCC--CCCCCCCCcEEecCC
Q 003496          188 QIWE-GKKQAFKLKFIDLHHSQYLTKIP--DLVETPNLERINLLN  229 (815)
Q Consensus       188 ~lp~-~~~~l~~L~~L~L~~~~~~~~~p--~l~~l~~L~~L~L~~  229 (815)
                      .++. .+..+++|+.+++..+  ...++  .+... +|+.+.+..
T Consensus        71 ~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   71 SIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence            5544 3455777777777653  22222  35555 677766654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.66  E-value=0.0019  Score=64.09  Aligned_cols=84  Identities=18%  Similarity=0.142  Sum_probs=59.8

Q ss_pred             cCCceEEEEeCCCCCCccccCcccccCCCCCCCCcCcceEEeCCCCCCCCCCCCCCccceeeecCCCCcccccc--cccC
Q 003496          118 MSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWE--GKKQ  195 (815)
Q Consensus       118 ~~~Lr~L~l~~~~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~lp~--~~~~  195 (815)
                      +.+.+.|++.++.++.       ..+   ...+| .|.+|.++-|.+++|...-.+++|++|.|+.|.|..+-+  -+++
T Consensus        18 l~~vkKLNcwg~~L~D-------Isi---c~kMp-~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLkn   86 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD-------ISI---CEKMP-LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKN   86 (388)
T ss_pred             HHHhhhhcccCCCccH-------HHH---HHhcc-cceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhc
Confidence            4455666776665531       111   12233 788888888888888776689999999999999998743  5788


Q ss_pred             CCCccEEecCCCCCCCc
Q 003496          196 AFKLKFIDLHHSQYLTK  212 (815)
Q Consensus       196 l~~L~~L~L~~~~~~~~  212 (815)
                      +++|+.|.|..|.-...
T Consensus        87 lpsLr~LWL~ENPCc~~  103 (388)
T KOG2123|consen   87 LPSLRTLWLDENPCCGE  103 (388)
T ss_pred             CchhhhHhhccCCcccc
Confidence            89999998888875443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.97  E-value=0.027  Score=33.35  Aligned_cols=19  Identities=26%  Similarity=0.146  Sum_probs=10.0

Q ss_pred             ceeeecCCCCccccccccc
Q 003496          176 LIELNLPYSNVEQIWEGKK  194 (815)
Q Consensus       176 L~~L~L~~~~i~~lp~~~~  194 (815)
                      |++|+|++|.++.+|.+++
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            4555555555555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.79  E-value=0.025  Score=33.46  Aligned_cols=17  Identities=41%  Similarity=0.829  Sum_probs=7.8

Q ss_pred             CCeeeccCCcCccCchh
Q 003496          477 IVWLALSGNHFERLPTS  493 (815)
Q Consensus       477 L~~L~Ls~n~l~~lp~~  493 (815)
                      |++|+|++|+++.+|.+
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            44444444444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.48  E-value=0.088  Score=28.90  Aligned_cols=15  Identities=27%  Similarity=0.523  Sum_probs=5.8

Q ss_pred             CCCEEEecCCCCccc
Q 003496          453 SLTELHLTDCNITEI  467 (815)
Q Consensus       453 ~L~~L~Ls~~~l~~l  467 (815)
                      +|+.|+|++|+++++
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            445555555554443

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.29  E-value=0.086  Score=28.95  Aligned_cols=16  Identities=38%  Similarity=0.547  Sum_probs=6.5

Q ss_pred             CCCeeeccCCcCccCc
Q 003496          476 SIVWLALSGNHFERLP  491 (815)
Q Consensus       476 ~L~~L~Ls~n~l~~lp  491 (815)
                      +|+.|+|++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555555444

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=90.61  E-value=0.86  Score=41.08  Aligned_cols=94  Identities=23%  Similarity=0.370  Sum_probs=42.6

Q ss_pred             CcceEEeCCCCCCCCCCC-C-CCccceeeecCCCCcccccc-cccCCCCccEEecCCCCCCCcCC--CCCCCCCCcEEec
Q 003496          153 ELRYLHWHQYSLKTLPLN-F-DPENLIELNLPYSNVEQIWE-GKKQAFKLKFIDLHHSQYLTKIP--DLVETPNLERINL  227 (815)
Q Consensus       153 ~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~~p--~l~~l~~L~~L~L  227 (815)
                      +|+.+.+.. .++.++.. | .+.+|+.+.+..+ +..++. .+..+.+|+.+.+..+  ...++  .+..+++|+.+.+
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~   88 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKNIDI   88 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECEEEE
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--cccccccccccccccccccc
Confidence            677777764 45556544 3 5667777777664 666654 3556656777777542  22222  3555677777777


Q ss_pred             CCCCCCCCc-ccccCCCCcccEEecCC
Q 003496          228 LNCTNLPYI-SSSIQNFNNLSVLSLAG  253 (815)
Q Consensus       228 ~~~~~~~~~-~~~l~~l~~L~~L~l~~  253 (815)
                      ..+  ...+ ...+.+. +|+.+.+.+
T Consensus        89 ~~~--~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   89 PSN--ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTT---BEEHTTTTTT--T--EEE-TT
T ss_pred             Ccc--ccEEchhhhcCC-CceEEEECC
Confidence            542  2222 2334444 666666543

>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=89.59  E-value=0.23  Score=28.38  Aligned_cols=20  Identities=65%  Similarity=1.316  Sum_probs=17.6

Q ss_pred             cceeeecCCCCccccccccc
Q 003496          175 NLIELNLPYSNVEQIWEGKK  194 (815)
Q Consensus       175 ~L~~L~L~~~~i~~lp~~~~  194 (815)
                      +|+.|+|++++++.||++.+
T Consensus         1 ~LVeL~m~~S~lekLW~G~k   20 (20)
T PF07725_consen    1 NLVELNMPYSKLEKLWEGVK   20 (20)
T ss_pred             CcEEEECCCCChHHhcCccC
Confidence            58999999999999998753

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=87.85  E-value=0.015  Score=65.13  Aligned_cols=38  Identities=26%  Similarity=0.302  Sum_probs=20.7

Q ss_pred             CCCcEEecCCCCCCCc----cchhhhccccccccccccccCC
Q 003496          382 EGLRKLDLGDCSELAS----LPEKLENLKSLKYLNAEFSAIG  419 (815)
Q Consensus       382 ~~L~~L~L~~~~~~~~----l~~~l~~l~~L~~L~l~~~~~~  419 (815)
                      ..|++|++..|.....    +...+.....++.++++.|.+.
T Consensus       144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~  185 (478)
T KOG4308|consen  144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI  185 (478)
T ss_pred             HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence            3455555555554332    3344455666666777666654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.82  E-value=0.68  Score=28.52  Aligned_cols=21  Identities=33%  Similarity=0.498  Sum_probs=14.0

Q ss_pred             CCCCCeeeccCCcCccCchhh
Q 003496          474 LSSIVWLALSGNHFERLPTSV  494 (815)
Q Consensus       474 l~~L~~L~Ls~n~l~~lp~~l  494 (815)
                      +++|+.|+|++|+++.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            356777777777777776543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.82  E-value=0.68  Score=28.52  Aligned_cols=21  Identities=33%  Similarity=0.498  Sum_probs=14.0

Q ss_pred             CCCCCeeeccCCcCccCchhh
Q 003496          474 LSSIVWLALSGNHFERLPTSV  494 (815)
Q Consensus       474 l~~L~~L~Ls~n~l~~lp~~l  494 (815)
                      +++|+.|+|++|+++.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            356777777777777776543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=81.80  E-value=0.87  Score=28.01  Aligned_cols=19  Identities=32%  Similarity=0.447  Sum_probs=11.0

Q ss_pred             ccceeeecCCCCccccccc
Q 003496          174 ENLIELNLPYSNVEQIWEG  192 (815)
Q Consensus       174 ~~L~~L~L~~~~i~~lp~~  192 (815)
                      ++|++|+|++|.|+.+|.+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4556666666666665544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=81.80  E-value=0.87  Score=28.01  Aligned_cols=19  Identities=32%  Similarity=0.447  Sum_probs=11.0

Q ss_pred             ccceeeecCCCCccccccc
Q 003496          174 ENLIELNLPYSNVEQIWEG  192 (815)
Q Consensus       174 ~~L~~L~L~~~~i~~lp~~  192 (815)
                      ++|++|+|++|.|+.+|.+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4556666666666665544

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=81.74  E-value=0.061  Score=52.40  Aligned_cols=85  Identities=15%  Similarity=0.196  Sum_probs=54.2

Q ss_pred             cccCCceEEEEeCCCCCCccccCcccccCCCCCCCCcCcceEEeCCCCCCCCCCCC-CCccceeeecCCCCccccccccc
Q 003496          116 VNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNF-DPENLIELNLPYSNVEQIWEGKK  194 (815)
Q Consensus       116 ~~~~~Lr~L~l~~~~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~lp~~~~  194 (815)
                      ...+..++|+++.|.+         +.+-..+.-+. .|..|+++.+.++.+|..+ .+..++.+++..|..+.+|.+.+
T Consensus        39 ~~~kr~tvld~~s~r~---------vn~~~n~s~~t-~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~  108 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRL---------VNLGKNFSILT-RLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQK  108 (326)
T ss_pred             hccceeeeehhhhhHH---------HhhccchHHHH-HHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccc
Confidence            3445566677666643         23333343343 5666777777777777777 67777777777777777777777


Q ss_pred             CCCCccEEecCCCCCC
Q 003496          195 QAFKLKFIDLHHSQYL  210 (815)
Q Consensus       195 ~l~~L~~L~L~~~~~~  210 (815)
                      .+++++++++.++.+.
T Consensus       109 k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  109 KEPHPKKNEQKKTEFF  124 (326)
T ss_pred             ccCCcchhhhccCcch
Confidence            7777777777666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	815
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		9e-09

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 76/184 (41%), Gaps = 11/184 (5%)
Query: 345 CSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKL-- 402
            + L   P+  ++   L  + L    +R LP+SI  L  LR+L +  C EL  LPE L  
Sbjct: 113 AAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAS 172
Query: 403 -------ENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRXXXXXXXXXXXXXXX 455
                  + L +L+ L  E++ I  LP+SI++L  LK LK                    
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232
Query: 456 XXXXXDCN-ITEIPADIGSLSSIVWLALSG-NHFERLPTSVKQLSQLRYLHLSNCNMLQS 513
                 C  +   P   G  + +  L L   ++   LP  + +L+QL  L L  C  L  
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292
Query: 514 LPEL 517
           LP L
Sbjct: 293 LPSL 296

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	815
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-58
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-43
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-38
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-35
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-37
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-36
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-33
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-30
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-30
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-30
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-30
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-20
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-20
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-15
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-16
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-15
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-15
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  199 bits (509), Expect = 6e-58
 Identities = 73/321 (22%), Positives = 120/321 (37%), Gaps = 20/321 (6%)

Query: 239 SIQNFNNLSVLSLAGCRSLVSFPRNI-YFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWN 297
              + +    L   G  +L  +   +  ++     D +   +       S N        
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN-SNNPQIETRTG 65

Query: 298 TRIEEVPSSIECLT--NLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEIL 355
             ++     +E  T      L+L     L +      +L  L  + +     L   P+ +
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAG-LMELPDTM 123

Query: 356 EKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPE---------KLENLK 406
           ++   L  + L    +R LP+SI  L  LR+L +  C EL  LPE         + + L 
Sbjct: 124 QQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 407 SLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCN-IT 465
           +L+ L  E++ I  LP+SI++L  LK LK        L P +  L  L EL L  C  + 
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR 243

Query: 466 EIPADIGSLSSIVWLALSG-NHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLV-- 522
             P   G  + +  L L   ++   LP  + +L+QL  L L  C  L  LP L   L   
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303

Query: 523 -YLEAKNCKRLQTLPEIPSSV 542
             +      + Q     P + 
Sbjct: 304 CIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  158 bits (401), Expect = 5e-43
 Identities = 66/275 (24%), Positives = 109/275 (39%), Gaps = 19/275 (6%)

Query: 154 LRYLHWHQYSLKTLPLNFDP---ENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYL 210
            +       +LK      +       + L L    + Q  +   +   L+ + +  +  L
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-L 116

Query: 211 TKIPD-LVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSP 269
            ++PD + +   LE + L     L  + +SI + N L  LS+  C  L   P  +   + 
Sbjct: 117 MELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLA-STD 174

Query: 270 IAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVST 329
            + +    VNL            LRL  T I  +P+SI  L NL++L +     L  +  
Sbjct: 175 ASGEHQGLVNLQS----------LRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGP 223

Query: 330 SICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRE-TAIRNLPSSIEYLEGLRKLD 388
           +I  L  L  L+L GC+ L  +P I      L  + L++ + +  LP  I  L  L KLD
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283

Query: 389 LGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPS 423
           L  C  L+ LP  +  L +   +        QL  
Sbjct: 284 LRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  115 bits (289), Expect = 4e-28
 Identities = 39/222 (17%), Positives = 67/222 (30%), Gaps = 37/222 (16%)

Query: 334 LKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGD-- 391
                 L   G + L  + ++L + +     D       N   S           +    
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADR------NRWHSAWRQANSNNPQIETRT 64

Query: 392 CSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGL 451
              L +  + LE+                             L+         P     L
Sbjct: 65  GRALKATADLLEDATQPG---------------------RVALELRSVPLPQFPDQAFRL 103

Query: 452 SSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNML 511
           S L  + +    + E+P  +   + +  L L+ N    LP S+  L++LR L +  C  L
Sbjct: 104 SHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPEL 163

Query: 512 QSLP-ELPIYLVYLEAKNCKRLQTL-------PEIPSSVEEL 545
             LP  L       E +    LQ+L         +P+S+  L
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.9 bits (242), Expect = 6e-22
 Identities = 52/290 (17%), Positives = 88/290 (30%), Gaps = 42/290 (14%)

Query: 107 DIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLD---QGLRYLPEE------LRYL 157
                 N  +     R LK    +         +V L+     L   P++      L+++
Sbjct: 51  RQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHM 109

Query: 158 HWHQYSLKTLPLNFDP-ENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPD- 215
                 L  LP        L  L L  + +  +        +L+ + +     LT++P+ 
Sbjct: 110 TIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEP 169

Query: 216 ---------LVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYF 266
                         NL+ + L   T +  + +SI N  NL  L +     L +    I  
Sbjct: 170 LASTDASGEHQGLVNLQSLRL-EWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAI-- 225

Query: 267 RSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKR 326
                        L E  L              +   P        L+ L L  C  L  
Sbjct: 226 --------HHLPKLEELDLRGCT---------ALRNYPPIFGGRAPLKRLILKDCSNLLT 268

Query: 327 VSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPS 376
           +   I +L  L  L+L GC NL   P ++ ++     I +       L  
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  152 bits (385), Expect = 3e-38
 Identities = 66/414 (15%), Positives = 133/414 (32%), Gaps = 59/414 (14%)

Query: 153 ELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAF----KLKFIDLHHSQ 208
           EL+ L +  +S       F  E L                KK       +L   DL    
Sbjct: 348 ELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407

Query: 209 YLTKIPDLVETPNLERINLLNCT------NLPYISSSIQNFNNLSVLSLAGCRSLVSFPR 262
            + + P++       RI+L +         + +IS +IQ    L ++  A          
Sbjct: 408 -INRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS-------- 458

Query: 263 NIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCK 322
                             T   +          +  + E    S   L +L  ++L  C 
Sbjct: 459 ----------------PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP 502

Query: 323 RLKRVSTSICKLKSLCWLELGG---------CSNLETFPEILEKMEHLLEIDLRETAIRN 373
            + ++   +  L  L  L +            ++     +  +    +    +    +  
Sbjct: 503 NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

Query: 374 LPSS--IEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSI-SDLNQ 430
            P+S  ++ +  L  LD      +  L         L  L  +++ I ++P    +  +Q
Sbjct: 563 FPASASLQKMVKLGLLDCVHNK-VRHLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQ 620

Query: 431 LKKLKFSGCRGLVLPPL--LSGLSSLTELHLTDCNITEIPADIGS------LSSIVWLAL 482
           ++ L FS  +   +P +     +  +  +  +   I     +I          +   + L
Sbjct: 621 VEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680

Query: 483 SGNHFERLPTSV-KQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTL 535
           S N  ++ PT +    S +  + LSN N++ S+PE  +       KN   L T+
Sbjct: 681 SYNEIQKFPTELFATGSPISTIILSN-NLMTSIPENSLKPKDGNYKNTYLLTTI 733

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  143 bits (363), Expect = 2e-35
 Identities = 65/550 (11%), Positives = 160/550 (29%), Gaps = 82/550 (14%)

Query: 86  LKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQ 145
           L        +   +  L++ + +    +       L   +   P+         ++H  +
Sbjct: 330 LAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK 389

Query: 146 GLRYLPEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKK---QAF----K 198
                 + L      Q ++   P     +    ++L  + +  +        +A     K
Sbjct: 390 MFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTK 449

Query: 199 LKFIDLHHSQYLTKIPDLVET---------------------PNLERINLLNCTNLPYIS 237
           L+ I   +S   T     V+                       +L  + L NC N+  + 
Sbjct: 450 LQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP 508

Query: 238 SSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIE----- 292
             + +   L  L++A  R  +S  +     + +A D      +  F +   N +E     
Sbjct: 509 DFLYDLPELQSLNIACNR-GISAAQLKADWTRLADDEDTGPKIQIFYM-GYNNLEEFPAS 566

Query: 293 -----------LRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICK-LKSLCWL 340
                      L   + ++  + +       L  L L +  +++ +    C     +  L
Sbjct: 567 ASLQKMVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGL 624

Query: 341 ELGGCSNLETFPEILE--KMEHLLEIDLRETAIRNLPSSIEYLEG------LRKLDLGDC 392
                  L+  P I     +  +  +D     I +   +I              + L   
Sbjct: 625 GFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683

Query: 393 SELASLP-EKLENLKSLKYLNA--------EFSAIGQLPSSISDLNQLKKLKFSGCRGLV 443
             +   P E       +  +            +++     +  +   L  +     +   
Sbjct: 684 E-IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

Query: 444 LPP--LLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHF-------ERLPTSV 494
           L      + L  L+ + ++    +  P    + S +    +             + PT +
Sbjct: 743 LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802

Query: 495 KQLSQLRYLHLSNCNMLQSLP-ELPIYLVYLEAKNCKRLQTLPEIPSSVEELDASMLESI 553
                L  L + + N ++ +  +L   L  L+  +     ++  + S    ++A M   +
Sbjct: 803 TTCPSLIQLQIGS-NDIRKVDEKLTPQLYILDIADNP-NISID-VTSVCPYIEAGMYVLL 859

Query: 554 YEHSSGIMDG 563
           Y+ +  I   
Sbjct: 860 YDKTQDIRGC 869

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.9 bits (184), Expect = 6e-14
 Identities = 29/210 (13%), Positives = 56/210 (26%), Gaps = 37/210 (17%)

Query: 355 LEKMEHLLEIDLRETAIRN-LPSSIEYLEGLRKLDLGD--------CSELASLPEKLENL 405
           L+    +  + L     +  +P +I  L  L+ L  G               L   +   
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 406 KSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNIT 465
           +  +               ++  + L+           +          T++      IT
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 466 EIPADIGSLSSIVWLALSGNHF--------------------ERLPTSVKQLSQLRYLHL 505
            I   I  L+ +  +  + + F                    E    S   L  L  + L
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498

Query: 506 SNCNMLQSLPELPIYLVYLEAKNCKRLQTL 535
            NC  +  LP+           +   LQ+L
Sbjct: 499 YNCPNMTQLPD--------FLYDLPELQSL 520

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  143 bits (364), Expect = 6e-37
 Identities = 88/438 (20%), Positives = 164/438 (37%), Gaps = 71/438 (16%)

Query: 117 NMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPE----ELRYLHWHQYSLKTLPLNFD 172
           N+ +         E++      +    +  +  L +    +   L  +   L +LP    
Sbjct: 32  NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE--L 89

Query: 173 PENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNC-- 230
           P +L  L    +++ ++ E  +    L   + +    L+ +P     P LE + + N   
Sbjct: 90  PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA-LSDLP-----PLLEYLGVSNNQL 143

Query: 231 TNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNI 290
             LP     +QN + L ++ +                            L + P +  ++
Sbjct: 144 EKLP----ELQNSSFLKIIDVDNNS------------------------LKKLPDLPPSL 175

Query: 291 IELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLET 350
             +   N ++EE+P  ++ L  L  +       LK++      L+S+     G    LE 
Sbjct: 176 EFIAAGNNQLEELPE-LQNLPFLTAIYADNNS-LKKLPDLPLSLESI---VAGNN-ILEE 229

Query: 351 FPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKY 410
            PE+ + +  L  I      ++ LP        L  L++ D   L  LPE  ++L  L  
Sbjct: 230 LPEL-QNLPFLTTIYADNNLLKTLPDLPP---SLEALNVRDNY-LTDLPELPQSLTFLDV 284

Query: 411 LNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPAD 470
               FS + +LP +      L  L  S      L  L     SL EL++++  + E+PA 
Sbjct: 285 SENIFSGLSELPPN------LYYLNASSNEIRSLCDLPP---SLEELNVSNNKLIELPAL 335

Query: 471 IGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCK 530
              L     L  S NH   +P        L+ LH+   N L+  P++P  +  L   +  
Sbjct: 336 PPRLER---LIASFNHLAEVPEL---PQNLKQLHVEY-NPLREFPDIPESVEDLRMNS-- 386

Query: 531 RLQTLPEIPSSVEELDAS 548
            L  +PE+P ++++L   
Sbjct: 387 HLAEVPELPQNLKQLHVE 404

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  141 bits (358), Expect = 3e-36
 Identities = 75/337 (22%), Positives = 136/337 (40%), Gaps = 41/337 (12%)

Query: 226 NLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAV-DFSDCV------ 278
            L + +NL  +    +N  + +    A      + P     +  +AV    DC+      
Sbjct: 16  PLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE 75

Query: 279 ------NLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSIC 332
                  L+  P +  ++  L      + E+P   + L +L   + +          ++ 
Sbjct: 76  LELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNL--------KALS 127

Query: 333 KL-KSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGD 391
            L   L +L +     LE  PE+ +    L  ID+   +++ LP        L  +  G+
Sbjct: 128 DLPPLLEYLGVSNN-QLEKLPEL-QNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGN 182

Query: 392 CSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGL 451
              L  LPE L+NL  L  + A+ +++ +LP        L+ +       L   P L  L
Sbjct: 183 NQ-LEELPE-LQNLPFLTAIYADNNSLKKLPDLPL---SLESIVAGNNI-LEELPELQNL 236

Query: 452 SSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNML 511
             LT ++  +  +  +P    SL +   L +  N+   LP        L +L +S  N+ 
Sbjct: 237 PFLTTIYADNNLLKTLPDLPPSLEA---LNVRDNYLTDLPEL---PQSLTFLDVSE-NIF 289

Query: 512 QSLPELPIYLVYLEAKNCKRLQTLPEIPSSVEELDAS 548
             L ELP  L YL A + + +++L ++P S+EEL+ S
Sbjct: 290 SGLSELPPNLYYLNASSNE-IRSLCDLPPSLEELNVS 325

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  124 bits (314), Expect = 2e-30
 Identities = 59/259 (22%), Positives = 104/259 (40%), Gaps = 30/259 (11%)

Query: 292 ELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETF 351
           E    ++ + E+P   E + +      ++ +  +       + + +    L  C +    
Sbjct: 15  EPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR--- 71

Query: 352 PEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYL 411
                      E++L    + +LP    +LE    L    C+ L  LPE  ++LKSL   
Sbjct: 72  --------QAHELELNNLGLSSLPELPPHLE---SLVA-SCNSLTELPELPQSLKSLLVD 119

Query: 412 NAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADI 471
           N    A+  LP        L+ L  S  +   LP  L   S L  + + + ++ ++P   
Sbjct: 120 NNNLKALSDLPPL------LEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLP 172

Query: 472 GSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKR 531
            SL     +A   N  E LP  ++ L  L  ++  N N L+ LP+LP+ L  + A N   
Sbjct: 173 PSLEF---IAAGNNQLEELP-ELQNLPFLTAIYADN-NSLKKLPDLPLSLESIVAGNNI- 226

Query: 532 LQTLPEIP--SSVEELDAS 548
           L+ LPE+     +  + A 
Sbjct: 227 LEELPELQNLPFLTTIYAD 245

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  112 bits (283), Expect = 1e-26
 Identities = 72/398 (18%), Positives = 147/398 (36%), Gaps = 62/398 (15%)

Query: 144 DQGLRYLPEE---LRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLK 200
           + GL  LPE    L  L     SL  LP    P++L  L +  +N++ + +       L+
Sbjct: 80  NLGLSSLPELPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLPP---LLE 134

Query: 201 FIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSF 260
           ++ + ++Q L K+P+L  +  L+ I++ N  +L  +     +   L  ++    + L   
Sbjct: 135 YLGVSNNQ-LEKLPELQNSSFLKIIDVDNN-SLKKLPDLPPS---LEFIAAGNNQ-LEEL 188

Query: 261 PRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSF 320
           P         A+   +  +L + P +  ++  +   N  +EE+P  ++ L  L T+    
Sbjct: 189 PELQNLPFLTAIYADNN-SLKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADN 246

Query: 321 CKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEY 380
              LK +      L++L   +      L   PE+ + +  L   +   + +  LP ++ Y
Sbjct: 247 N-LLKTLPDLPPSLEALNVRDN----YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 301

Query: 381 L--------------EGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSIS 426
           L                L +L++ +   L  LP        L+ L A F+ + ++P    
Sbjct: 302 LNASSNEIRSLCDLPPSLEELNVSNNK-LIELPA---LPPRLERLIASFNHLAEVPELPQ 357

Query: 427 DLNQLKKLKFSGCRGLVLPPLLSGL----------------SSLTELHLTDCNITEIPAD 470
               LK+L          P +   +                 +L +LH+    + E P  
Sbjct: 358 ---NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDI 414

Query: 471 IGSLSSIVWLALSGNHFERLPT-SVKQLSQLRYLHLSN 507
             S+     L ++          + +   +L      +
Sbjct: 415 PESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEH 449

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 86.6 bits (215), Expect = 6e-18
 Identities = 59/323 (18%), Positives = 117/323 (36%), Gaps = 38/323 (11%)

Query: 147 LRYLPEE---LRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFID 203
           L+ LP+    L ++      L+ LP   +   L  +    ++++++         L+ I 
Sbjct: 165 LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL---PDLPLSLESIV 221

Query: 204 LHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRN 263
             ++  L ++P+L   P L  I   +   L  +     +   L+V        L   P  
Sbjct: 222 AGNNI-LEELPELQNLPFLTTIYA-DNNLLKTLPDLPPSLEALNVRDN----YLTDLPEL 275

Query: 264 IYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKR 323
              +S   +D S+    +    +  N+  L   +  I  +        +LE L++S  K 
Sbjct: 276 P--QSLTFLDVSEN-IFSGLSELPPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNK- 328

Query: 324 LKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEG 383
           L  +     +L+ L         +L   PE+ + ++ L    +    +R  P   E +E 
Sbjct: 329 LIELPALPPRLERL---IASFN-HLAEVPELPQNLKQL---HVEYNPLREFPDIPESVED 381

Query: 384 LRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLV 443
           LR       S LA +PE  +NLK    L+ E + + + P        ++ L+ +  R + 
Sbjct: 382 LRM-----NSHLAEVPELPQNLK---QLHVETNPLREFPDIP---ESVEDLRMNSERVVD 430

Query: 444 LPPL-LSGLSSLTELHLTDCNIT 465
                      L +      +  
Sbjct: 431 PYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 85.0 bits (211), Expect = 2e-17
 Identities = 39/207 (18%), Positives = 75/207 (36%), Gaps = 33/207 (15%)

Query: 360 HLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIG 419
            L E     + +  +P   E ++   +          + P      + +        A+ 
Sbjct: 12  FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM--------AVS 63

Query: 420 QLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVW 479
           +L   +    Q  +L+ +      LP L      L  L  +  ++TE+P    SL S++ 
Sbjct: 64  RLRDCL--DRQAHELELNNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLV 118

Query: 480 LALSGNHFERLPTS----------------VKQLSQLRYLHLSNCNMLQSLPELPIYLVY 523
              +      LP                  ++  S L+ + + N N L+ LP+LP  L +
Sbjct: 119 DNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDN-NSLKKLPDLPPSLEF 177

Query: 524 LEAKNCKRLQTLPEIP--SSVEELDAS 548
           + A N + L+ LPE+     +  + A 
Sbjct: 178 IAAGNNQ-LEELPELQNLPFLTAIYAD 203

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 16/121 (13%)

Query: 442 LVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFER-LPTSVKQLS-- 498
           + + P     + L E      N+TE+P +  ++ S      + + +ER  P    +    
Sbjct: 1   MFINPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 499 -----------QLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEIPSSVEELDA 547
                      Q   L L+N   L SLPELP +L  L A +C  L  LPE+P S++ L  
Sbjct: 61  AVSRLRDCLDRQAHELELNNLG-LSSLPELPPHLESLVA-SCNSLTELPELPQSLKSLLV 118

Query: 548 S 548
            
Sbjct: 119 D 119

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  139 bits (352), Expect = 2e-34
 Identities = 43/355 (12%), Positives = 105/355 (29%), Gaps = 46/355 (12%)

Query: 198 KLKFIDLHHSQYLTKIPD-LVETPNLERINL----LNCTNLPYISSSIQNFNNLSVLSLA 252
           ++  + L       ++PD + +   LE + L           +    I    +       
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 253 GCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTN 312
                 +F                     +F  +  + I     + + + +  S      
Sbjct: 142 RMHYQKTFVDYD--------------PREDFSDLIKDCINS---DPQQKSIKKSSRITLK 184

Query: 313 LETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIR 372
              +       +  VS ++ +L  L    +G    +        + E+           +
Sbjct: 185 DTQIGQLSNN-ITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ----YK 239

Query: 373 NLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLN---------AEFSAIGQLPS 423
                 + L+ L  +++ +C  L  LP  L+ L  ++ +N          +     Q  +
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299

Query: 424 SISDLNQLKKLKFSGC--RGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLA 481
                 +++ +       +   +   L  +  L  L      +       GS   +  L 
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLN 359

Query: 482 LSGNHFERLPTSV-KQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTL 535
           L+ N    +P +      Q+  L  ++ N L+ +P +       +AK+   +  +
Sbjct: 360 LAYNQITEIPANFCGFTEQVENLSFAH-NKLKYIPNI------FDAKSVSVMSAI 407

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  137 bits (347), Expect = 7e-34
 Identities = 52/464 (11%), Positives = 137/464 (29%), Gaps = 58/464 (12%)

Query: 98  ILLNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYL 157
           +     +   +H             F           P   S     +    +  +   +
Sbjct: 133 MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS----IKKSSRITLKDTQI 188

Query: 158 HWHQYSLKTLPLNF-DPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDL 216
                ++  +         L +  +  ++       +      +  +  ++Q        
Sbjct: 189 GQLSNNITFVSKAVMRLTKLRQFYM-GNS--PF-VAENICEAWENENSEYAQQYKTEDLK 244

Query: 217 VET-PNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCR--SLVSFPRNIYFRSPIAV- 272
            +   +L  + + NC NL  + + ++    + ++++A  R  S      +    +   V 
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304

Query: 273 ------DFSDCVNLTEFPLVSG-----NIIELRLWNTRIEEVPSSIECLTNLETLDLSFC 321
                       NL  FP+ +       +  L     ++E    +      L +L+L++ 
Sbjct: 305 EKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN 363

Query: 322 KRLKRVSTSIC-KLKSLCWLELGGCSNLETFPEILE--KMEHLLEIDLR--------ETA 370
            ++  +  + C   + +  L       L+  P I +   +  +  ID             
Sbjct: 364 -QITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 371 IRNLPSSIEYLEGLRKLDLGDCSELASLP-EKLENLKSLKYLN--------AEFSAIGQL 421
              L  +      +  ++L +   ++  P E       L  +N           +++   
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480

Query: 422 PSSISDLNQLKKLKFSGCR--GLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVW 479
             +  +   L  +     +   L      + L  L  + L+  + ++ P    + S++  
Sbjct: 481 NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKG 540

Query: 480 LAL------SGNHFER-LPTSVKQLSQLRYLHLSNCNMLQSLPE 516
             +       GN   R  P  +     L  L + + N ++ + E
Sbjct: 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS-NDIRKVNE 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  136 bits (344), Expect = 2e-33
 Identities = 47/385 (12%), Positives = 123/385 (31%), Gaps = 54/385 (14%)

Query: 175 NLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVE-TPNLERINLLNCTNL 233
             + ++   + V+     ++    L    ++       I      T    +I  L+  N+
Sbjct: 139 QKMRMHYQKTFVDYD--PREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS-NNI 195

Query: 234 PYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIEL 293
            ++S ++     L    +                                 +      E 
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNS------------------------PFVAENICEAWENEN 231

Query: 294 RLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPE 353
             +  + +      + L +L  +++  C  L ++ T +  L  +  + +       +  +
Sbjct: 232 SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN-RGISGEQ 290

Query: 354 I---------LEKMEHLLEIDLRETAIRNL--PSSIEYLEGLRKLDLGDCSELASLPEKL 402
           +             E +  I +    ++     +S++ ++ L  L+      L       
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLPAF 349

Query: 403 ENLKSLKYLNAEFSAIGQLPSSI-SDLNQLKKLKFSGCRGLVLPPLLS--GLSSLTELHL 459
            +   L  LN  ++ I ++P++      Q++ L F+  +   +P +     +S ++ +  
Sbjct: 350 GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDF 409

Query: 460 TDCNIT--------EIPADIGSLSSIVWLALSGNHFERLPTSV-KQLSQLRYLHLSNCNM 510
           +   I          +        ++  + LS N   + P  +    S L  ++L   NM
Sbjct: 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG-NM 468

Query: 511 LQSLPELPIYLVYLEAKNCKRLQTL 535
           L  +P+  +       KN   L ++
Sbjct: 469 LTEIPKNSLKDENENFKNTYLLTSI 493

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  125 bits (315), Expect = 7e-30
 Identities = 61/464 (13%), Positives = 140/464 (30%), Gaps = 83/464 (17%)

Query: 86  LKKNKGTDAIEGILLNLSKTRDIHLDGNV---FVNMSNLRFLKFYMPEYKGVPIMSSKVH 142
           +  +               +            + N+ +L  ++ Y               
Sbjct: 213 MGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN-------------- 258

Query: 143 LDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFI 202
               L  LP  L+ L      ++ + +     N         +  Q         K++ I
Sbjct: 259 -CPNLTKLPTFLKALP----EMQLINVAC---NRGISGEQLKDDWQALADAPVGEKIQII 310

Query: 203 DLHHSQYLTKIP---DLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVS 259
            + ++  L   P    L +   L  +  L    L     +  +   L+ L+LA  + +  
Sbjct: 311 YIGYNN-LKTFPVETSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLAYNQ-ITE 367

Query: 260 FPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIEC--LTNLETLD 317
            P N                +            L   + +++ +P+  +   ++ +  +D
Sbjct: 368 IPANF---------CGFTEQVEN----------LSFAHNKLKYIPNIFDAKSVSVMSAID 408

Query: 318 LSF-------CKRLKRVSTSICKLKSLCWLELGGCSNLETFP-EILEKMEHLLEIDLRE- 368
            S+        K    +  +  K  ++  + L     +  FP E+      L  I+L   
Sbjct: 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGN 467

Query: 369 -------TAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLE--NLKSLKYLNAEFSAIG 419
                   ++++   + +    L  +DL     L  L +      L  L  ++  +++  
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFS 526

Query: 420 QLPSSISDLNQLKKLKFSGCRGL-------VLPPLLSGLSSLTELHLTDCNITEIPADIG 472
           + P+   + + LK       R           P  ++   SLT+L +   +I ++   I 
Sbjct: 527 KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI- 585

Query: 473 SLSSIVWLALSGNHFERLP-TSVKQLSQLRYLHLSNCNMLQSLP 515
              +I  L +  N    +  + V    +     L   +  Q + 
Sbjct: 586 -TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFY-DKTQDIR 627

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  102 bits (256), Expect = 1e-22
 Identities = 33/263 (12%), Positives = 78/263 (29%), Gaps = 44/263 (16%)

Query: 310 LTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGG----CSNLETFPEILEKMEHLLEID 365
              +  L L       RV  +I +L  L  L LG      +     P+ +       +  
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 366 L-RETAIRNLPSSIEYLE--GLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLP 422
             R    +         +   L K  +    +  S+ +          +    + I  + 
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS 199

Query: 423 SSISDLNQLKKLKFSGCR--------------------GLVLPPLLSGLSSLTELHLTDC 462
            ++  L +L++                                     L  LT++ + +C
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259

Query: 463 N-ITEIPADIGSLSSIVWLALSGNHFERLP---------TSVKQLSQLRYLHLSNCNMLQ 512
             +T++P  + +L  +  + ++ N                      +++ +++   N L+
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY-NNLK 318

Query: 513 SLPELPIYLVYLEAKNCKRLQTL 535
           + P +   L     +  K+L  L
Sbjct: 319 TFP-VETSL-----QKMKKLGML 335

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 77.0 bits (190), Expect = 9e-15
 Identities = 28/280 (10%), Positives = 71/280 (25%), Gaps = 23/280 (8%)

Query: 315 TLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIR-- 372
             +        +   S+     +  L L G       P+ + ++  L  + L     +  
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 373 ---NLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSA---IGQLPSSIS 426
                P  I       +          +  +          +    ++      +  S  
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180

Query: 427 DLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNIT-EIPADIGSLSSIVWLALSGN 485
              +  ++         +   +  L+ L + ++ +     E   +     +  +      
Sbjct: 181 ITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240

Query: 486 HFERLPTSVKQLSQLRYLHLSNCNMLQSLPE----LPIYLVYLEAKNCKRLQTLPEIPSS 541
                      L  L  + + NC  L  LP     LP  +  +      R  +  ++   
Sbjct: 241 ----EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP-EMQLINVACN-RGISGEQLKDD 294

Query: 542 VEEL----DASMLESIYEHSSGIMDGILFFDFTNCLKLNE 577
            + L        ++ IY   + +    +        KL  
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGM 334

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  132 bits (333), Expect = 3e-32
 Identities = 85/473 (17%), Positives = 159/473 (33%), Gaps = 63/473 (13%)

Query: 86  LKKNKGTDAIEGILLNLSKTRDIHLDGN--------VFVNMSNLRFLKFYMPEYKGVPIM 137
           L  N       G    L+   ++                 +  L+ L           + 
Sbjct: 87  LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP 146

Query: 138 SSKVHLDQGLRYLPEELRYLHWHQYSLKTLP------LNFDPENLIELNLPYSNVEQIWE 191
           +   +L          L ++      ++T+       L  +P+  + L++  + ++ I +
Sbjct: 147 AYFSNL--------TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198

Query: 192 GKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSL 251
              Q  KL  + L  +   + I            NL        I    ++  NL +   
Sbjct: 199 QAFQGIKLHELTLRGNFNSSNIMKTCLQ------NLAGLHVHRLILGEFKDERNLEIFEP 252

Query: 252 AGCRSLVSFPRN------IYFRSPIAVDFSDCVNLTEFPLVSGNIIE------------- 292
           +    L     +          S   V F    N++   L +G  I+             
Sbjct: 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL-AGVSIKYLEDVPKHFKWQS 311

Query: 293 LRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGC--SNLET 350
           L +   ++++ P+    L  L++L L+  K    +S     L SL +L+L     S    
Sbjct: 312 LSIIRCQLKQFPTL--DLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGC 367

Query: 351 FPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEK--LENLKSL 408
                     L  +DL       + ++   LE L+ LD    S L  + E     +L+ L
Sbjct: 368 CSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH-STLKRVTEFSAFLSLEKL 426

Query: 409 KYLNAEFSAIGQLPSSI-SDLNQLKKLKFSGCR--GLVLPPLLSGLSSLTELHLTDCNIT 465
            YL+  ++        I   L  L  LK +G       L  + +  ++LT L L+ C + 
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

Query: 466 EIPADI-GSLSSIVWLALSGNHFERLPTSV-KQLSQLRYLHLSNCNMLQSLPE 516
           +I   +  +L  +  L +S N+   L +S   QL  L  L  S  N +++   
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF-NRIETSKG 538

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  115 bits (291), Expect = 5e-27
 Identities = 87/468 (18%), Positives = 145/468 (30%), Gaps = 82/468 (17%)

Query: 100 LNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQ-GLRYLPEE----- 153
           L L+           F  +++L  L                    +  L  L        
Sbjct: 85  LILTGNPIQSFSPGSFSGLTSLENL-----------------VAVETKLASLESFPIGQL 127

Query: 154 --LRYLHWHQYSLKTLPLN--FDP-ENLIELNLPYSNVEQIWEG-----KKQAFKLKFID 203
             L+ L+     + +  L   F    NL+ ++L Y+ ++ I        ++       +D
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187

Query: 204 LHHSQYLTKIPDLV-ETPNLERINLLNCTNLPYI-SSSIQNFNNLSVLSLAGCRSLVSFP 261
           +  +  +  I D   +   L  + L    N   I  + +QN   L V  L          
Sbjct: 188 MSLNP-IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE------ 240

Query: 262 RNIYFRSPIAVDFSDCVNLTEFP------LVSGNIIELRLWNTRIEEV-PSSIECLTNLE 314
                       F D  NL  F       L    I E RL  T           CL N+ 
Sbjct: 241 ------------FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288

Query: 315 TLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNL 374
            + L+    +K +   + K      L +  C  L+ FP +   +  L  + L        
Sbjct: 289 AMSLAGVS-IKYLE-DVPKHFKWQSLSIIRC-QLKQFPTL--DLPFLKSLTLTMNKGSIS 343

Query: 375 PSSIEYLEGLRKLDLGDC--SELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLK 432
              +  L  L  LDL     S             SL++L+  F+    + ++   L +L+
Sbjct: 344 FKKVA-LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQ 402

Query: 433 KLKFSGCR--GLVLPPLLSGLSSLTELHLTDCNITEIPADI-GSLSSIVWLALSGNHFER 489
            L F       +        L  L  L ++  N       I   L+S+  L ++GN F+ 
Sbjct: 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462

Query: 490 --LPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTL 535
             L       + L +L LS    L+ +                RLQ L
Sbjct: 463 NTLSNVFANTTNLTFLDLSK-CQLEQISWGVF-------DTLHRLQLL 502

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  104 bits (261), Expect = 2e-23
 Identities = 82/458 (17%), Positives = 138/458 (30%), Gaps = 67/458 (14%)

Query: 86  LKKNKGTDAIEGILLNLSKTRDIHLDGN---------VFVNMSNLRFLKFYMPEYKGVPI 136
             + K        +  L   + +++  N          F N++NL  +           I
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS-----YNYI 165

Query: 137 MSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLN-FDPENLIELNLPYSNVEQIWEGKKQ 195
            +  V+  Q LR  P+    L      +  +    F    L EL L            K 
Sbjct: 166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL--RGNFNSSNIMKT 223

Query: 196 AFK----LKFIDLHHSQY-----LTKIPD--LVETPNLERINL-LNCTNLPYIS-SSIQN 242
             +    L    L   ++     L       +    ++      L  TN           
Sbjct: 224 CLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHC 283

Query: 243 FNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLV----------SGNII- 291
             N+S +SLAG  S+             ++    C  L +FP +          + N   
Sbjct: 284 LANVSAMSLAGV-SIKYLEDVPKHFKWQSLSIIRC-QLKQFPTLDLPFLKSLTLTMNKGS 341

Query: 292 ------------ELRLWNTRIEEVPS---SIECLTNLETLDLSFCKRLKRVSTSICKLKS 336
                        L L    +        S     +L  LDLSF      +S +   L+ 
Sbjct: 342 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEE 400

Query: 337 LCWLELGGCSNLETFPEI--LEKMEHLLEIDLRETAIRNLPSSI-EYLEGLRKLDLGDCS 393
           L  L+    S L+   E      +E LL +D+  T  +     I   L  L  L +   S
Sbjct: 401 LQHLDFQH-STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459

Query: 394 ELASLPEK-LENLKSLKYLNAEFSAIGQLP-SSISDLNQLKKLKFSGCRGLVLPP-LLSG 450
              +       N  +L +L+     + Q+       L++L+ L  S    L L     + 
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519

Query: 451 LSSLTELHLTDCNITEIPADIGS-LSSIVWLALSGNHF 487
           L SL+ L  +   I      +     S+ +  L+ N  
Sbjct: 520 LYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  104 bits (261), Expect = 2e-23
 Identities = 70/423 (16%), Positives = 128/423 (30%), Gaps = 69/423 (16%)

Query: 150 LPEELRYLHWHQYSLKTLPLN-FDP-ENLIELNLPYSNVEQIWEGKKQAF----KLKFID 203
           +P   + +      LK L    F     L  L+L    +E I +    A+     L  + 
Sbjct: 30  IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK---AWHGLHHLSNLI 86

Query: 204 LHHSQYLTKIPD--LVETPNLERINLLNC--TNLPYISSSIQNFNNLSVLSLAGCRSLVS 259
           L  +  +            +LE +  +     +L   S  I     L  L++A    + S
Sbjct: 87  LTGNP-IQSFSPGSFSGLTSLENLVAVETKLASLE--SFPIGQLITLKKLNVAHNF-IHS 142

Query: 260 FPRNIYFRSPIA---VDFSDCV-------NLTEFPLVSGNIIELRLWNTRIEEVPSSIEC 309
                YF +      VD S          +L          + L +    I+ +      
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202

Query: 310 LTNLETLDLSFCKRLKRVSTSIC------KLKSLCWLELGGCSNLETFPE-ILEKMEHLL 362
              L  L L        +  +         +  L   E     NLE F   I+E +  + 
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 363 EIDLRETAIRNL---PSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIG 419
             + R T   +          L  +  + L   S +  L + +      + L+     + 
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLED-VPKHFKWQSLSIIRCQLK 320

Query: 420 QLPSSISDLNQLKKLKFSGCRGLVLPPLLS-------------------------GLSSL 454
           Q P+   DL  LK L  +  +G +    ++                         G +SL
Sbjct: 321 QFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378

Query: 455 TELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLP--TSVKQLSQLRYLHLSNCNMLQ 512
             L L+      + A+   L  +  L    +  +R+   ++   L +L YL +S     +
Sbjct: 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY-TNTK 437

Query: 513 SLP 515
              
Sbjct: 438 IDF 440

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 99.3 bits (248), Expect = 1e-21
 Identities = 59/358 (16%), Positives = 113/358 (31%), Gaps = 57/358 (15%)

Query: 199 LKFIDLHHSQYLTKIP--DLVETPNLERINLLNCTNLPYI-SSSIQNFNNLSVLSLAGCR 255
            K IDL  +  L  +          L+ ++L  C  +  I   +    ++LS L L G  
Sbjct: 34  TKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNP 91

Query: 256 SLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPS-SIECLTNLE 314
            + SF             FS   +L            L    T++  + S  I  L  L+
Sbjct: 92  -IQSFSPGS---------FSGLTSLE----------NLVAVETKLASLESFPIGQLITLK 131

Query: 315 TLDLSFCKRLKRVS--TSICKLKSLCWLELGGCS----NLETFPEILEKMEHLLEIDLRE 368
            L+++    +           L +L  ++L         +     + E  +  L +D+  
Sbjct: 132 KLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 369 TAIRNLPSSIEYLEGLRKLDLGDCSELASLPE----KLENLKSLKYLNAEFSAIGQL--- 421
             I  +         L +L L      +++ +     L  L   + +  EF     L   
Sbjct: 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250

Query: 422 -PSSISDLNQLKKLKFSGCRGL---VLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSI 477
            PS +  L  +   +F                 L++++ + L   +I  +  D+      
Sbjct: 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKW 309

Query: 478 VWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTL 535
             L++     ++ PT    L  L+ L L+      S  ++              L  L
Sbjct: 310 QSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKV----------ALPSLSYL 355

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 90.1 bits (224), Expect = 9e-19
 Identities = 48/247 (19%), Positives = 85/247 (34%), Gaps = 25/247 (10%)

Query: 279 NLTEFPL-VSGNIIELRLWNTRIEEVP-SSIECLTNLETLDLSFCKRLKRVSTSICKLKS 336
            L++ P  +  +   + L    ++ +   S    + L+ LDLS C+       +   L  
Sbjct: 22  KLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH 81

Query: 337 LCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPS-SIEYLEGLRKLDLGDCS-E 394
           L  L L G       P     +  L  +   ET + +L S  I  L  L+KL++      
Sbjct: 82  LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141

Query: 395 LASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSL 454
              LP    NL +L +++  ++ I  +    +DL  L++                     
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITV--NDLQFLRENPQ----------------VN 183

Query: 455 TELHLTDCNITEIPADIGSLSSIVWLALSGNHF--ERLPTSVKQLSQLRYLHLSNCNMLQ 512
             L ++   I  I         +  L L GN      + T ++ L+ L    L      +
Sbjct: 184 LSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL-GEFK 242

Query: 513 SLPELPI 519
               L I
Sbjct: 243 DERNLEI 249

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.3 bits (144), Expect = 3e-09
 Identities = 31/122 (25%), Positives = 40/122 (32%), Gaps = 23/122 (18%)

Query: 420 QLPSSISDL----NQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPAD-IGSL 474
            +PSS  ++    N LK LK             S  S L  L L+ C I  I       L
Sbjct: 29  DIPSSTKNIDLSFNPLKILK---------SYSFSNFSELQWLDLSRCEIETIEDKAWHGL 79

Query: 475 SSIVWLALSGNHFERLPTSV-KQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQ 533
             +  L L+GN  +         L+ L  L       L SL   PI            L+
Sbjct: 80  HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPI-------GQLITLK 131

Query: 534 TL 535
            L
Sbjct: 132 KL 133

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  125 bits (317), Expect = 1e-31
 Identities = 77/360 (21%), Positives = 140/360 (38%), Gaps = 45/360 (12%)

Query: 176 LIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPY 235
              L    + + QI+     A +     L  +  +T +    E  ++ ++ +     +  
Sbjct: 2   AATLATLPAPINQIFPDADLA-EGIRAVLQKAS-VTDVVTQEELESITKLVV-AGEKVAS 58

Query: 236 ISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRL 295
           I   I+   NL  L+L G + +                 S+ V LT           L +
Sbjct: 59  IQG-IEYLTNLEYLNLNGNQ-ITDIS-----------PLSNLVKLTN----------LYI 95

Query: 296 WNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEIL 355
              +I ++ + ++ LTNL  L L+    +  +S  +  L  +  L LG   +  +    L
Sbjct: 96  GTNKITDISA-LQNLTNLRELYLNEDN-ISDIS-PLANLTKMYSLNLGAN-HNLSDLSPL 151

Query: 356 EKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEF 415
             M  L  + + E+ ++++   I  L  L  L L    ++  +   L +L SL Y  A  
Sbjct: 152 SNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYV 208

Query: 416 SAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLS 475
           + I  +   ++++ +L  LK    +   L PL + LS LT L +    I++I A +  L+
Sbjct: 209 NQITDITP-VANMTRLNSLKIGNNKITDLSPL-ANLSQLTWLEIGTNQISDINA-VKDLT 265

Query: 476 SIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTL 535
            +  L +  N    +   +  LSQL  L L+N N L +     I            L TL
Sbjct: 266 KLKMLNVGSNQISDIS-VLNNLSQLNSLFLNN-NQLGNEDMEVI-------GGLTNLTTL 316

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (310), Expect = 1e-30
 Identities = 72/359 (20%), Positives = 134/359 (37%), Gaps = 37/359 (10%)

Query: 152 EELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLT 211
            E       + S+  +    + E++ +L +    V  I +G +    L++++L+ +Q +T
Sbjct: 22  AEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASI-QGIEYLTNLEYLNLNGNQ-IT 79

Query: 212 KIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIA 271
            I  L     L  + +    N     S++QN  NL  L L     +              
Sbjct: 80  DISPLSNLVKLTNLYIGT--NKITDISALQNLTNLRELYLNEDN-ISDIS---------- 126

Query: 272 VDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSI 331
              ++   +            L L         S +  +T L  L ++  K +K V+  I
Sbjct: 127 -PLANLTKMYS----------LNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVT-PI 173

Query: 332 CKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGD 391
             L  L  L L     +E     L  +  L         I ++   +  +  L  L +G+
Sbjct: 174 ANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVNQITDIT-PVANMTRLNSLKIGN 230

Query: 392 CSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGL 451
             ++  L   L NL  L +L    + I  +  ++ DL +LK L     + +    +L+ L
Sbjct: 231 N-KITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQ-ISDISVLNNL 286

Query: 452 SSLTELHLTDCNITEIPAD-IGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCN 509
           S L  L L +  +     + IG L+++  L LS NH   +   +  LS++     +N  
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR-PLASLSKMDSADFANQV 344

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  127 bits (320), Expect = 1e-30
 Identities = 62/268 (23%), Positives = 94/268 (35%), Gaps = 37/268 (13%)

Query: 296 WNTRIEEVPSSIECL-TNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEI 354
              R   V     CL      L++     L  +   +     +  L +    NL + P +
Sbjct: 24  SRGRAAVVQKMRACLNNGNAVLNVG-ESGLTTLPDCL--PAHITTLVIPDN-NLTSLPAL 79

Query: 355 LEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENL--------- 405
             ++  L   ++    + +LP     L  L        + L +LP  L  L         
Sbjct: 80  PPELRTL---EVSGNQLTSLPVLPPGLLELSIFSNPL-THLPALPSGLCKLWIFGNQLTS 135

Query: 406 -----KSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLT 460
                  L+ L+   + +  LP+  S   +L KL     +   LP L    S L EL ++
Sbjct: 136 LPVLPPGLQELSVSDNQLASLPALPS---ELCKLWAYNNQLTSLPMLP---SGLQELSVS 189

Query: 461 DCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIY 520
           D  +  +P     L     L    N    LP      S L+ L +S  N L SLP LP  
Sbjct: 190 DNQLASLPTLPSELYK---LWAYNNRLTSLPAL---PSGLKELIVSG-NRLTSLPVLPSE 242

Query: 521 LVYLEAKNCKRLQTLPEIPSSVEELDAS 548
           L  L      RL +LP +PS +  L   
Sbjct: 243 LKELMVSGN-RLTSLPMLPSGLLSLSVY 269

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  122 bits (307), Expect = 5e-29
 Identities = 66/365 (18%), Positives = 121/365 (33%), Gaps = 54/365 (14%)

Query: 198 KLKFIDLHHSQYLTKIPDLVETPNLERINLLNC--TNLPYISSSIQNFNNLSVLSLAGCR 255
               +++  S  LT +PD +   ++  + + +   T+LP           L  L ++G +
Sbjct: 41  GNAVLNVGESG-LTTLPDCLPA-HITTLVIPDNNLTSLP------ALPPELRTLEVSGNQ 92

Query: 256 SLVSFPRNIYFRSPIAVDFSDCVNL-------TEFPLVSGNIIELRLWNTRIEEVPSSIE 308
            L S P                + L       T  P +   + +L ++  ++  +P    
Sbjct: 93  -LTSLPVLP----------PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLP- 140

Query: 309 CLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRE 368
               L+ L +S   +L  +     +L  L          L + P +   ++ L    + +
Sbjct: 141 --PGLQELSVSDN-QLASLPALPSELCKLWAYNN----QLTSLPMLPSGLQEL---SVSD 190

Query: 369 TAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDL 428
             + +LP+    L  L   +      L SLP     LK L       + +  LP   S  
Sbjct: 191 NQLASLPTLPSELYKLWAYNN----RLTSLPALPSGLKEL---IVSGNRLTSLPVLPS-- 241

Query: 429 NQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFE 488
            +LK+L  SG R   LP L S    L  L +    +T +P  +  LSS   + L GN   
Sbjct: 242 -ELKELMVSGNRLTSLPMLPS---GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 297

Query: 489 RLPTSV-KQLSQLRYLHLSNCNMLQSLPELP-IYLVYLEAKNCKRLQTLPEIPSSVEELD 546
                  ++++              +    P        A     +      P+  +   
Sbjct: 298 ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWH 357

Query: 547 ASMLE 551
               E
Sbjct: 358 MFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 75.3 bits (185), Expect = 3e-14
 Identities = 51/315 (16%), Positives = 99/315 (31%), Gaps = 74/315 (23%)

Query: 147 LRYLPEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHH 206
           L  LP  L  L      L +LP+   P  L EL++  +                      
Sbjct: 116 LPALPSGLCKLWIFGNQLTSLPVL--PPGLQELSVSDNQ--------------------- 152

Query: 207 SQYLTKIPDLVETPNLERINLLNC--TNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNI 264
              L  +P L     L ++   N   T+LP         + L  LS++  +         
Sbjct: 153 ---LASLPALP--SELCKLWAYNNQLTSLP------MLPSGLQELSVSDNQ--------- 192

Query: 265 YFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRL 324
                          L   P +   + +L  +N R+  +P+     + L+ L +S   RL
Sbjct: 193 ---------------LASLPTLPSELYKLWAYNNRLTSLPALP---SGLKELIVSGN-RL 233

Query: 325 KRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGL 384
             +     +LK    L + G   L + P +   +  L    +    +  LP S+ +L   
Sbjct: 234 TSLPVLPSELK---ELMVSGN-RLTSLPMLPSGLLSL---SVYRNQLTRLPESLIHLSSE 286

Query: 385 RKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVL 444
             ++L     L+      + L+ +         I +   + +   +  +         ++
Sbjct: 287 TTVNLEGNP-LSERTL--QALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLV 343

Query: 445 PPLLSGLSSLTELHL 459
           P      +     H+
Sbjct: 344 PAREGEPAPADRWHM 358

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  124 bits (314), Expect = 5e-30
 Identities = 91/477 (19%), Positives = 165/477 (34%), Gaps = 67/477 (14%)

Query: 86  LKKNKGTDAIEGILLNLSKTRDIHLDGN--------VFVNMSNLRFLKFYMPEYKGVPIM 137
           L  N       G    LS  + +                ++  L+ L       +   + 
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 138 SSKVHLDQGLRYLPEELRYLHWHQYSLKTLP------LNFDPENLIELNLPYSNVEQIWE 191
               +L          L +L      ++++       L+  P   + L+L  + +  I  
Sbjct: 143 EYFSNL--------TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 192 GKKQAFKLKFIDLHHSQYLTKIPDLV-------ETPNLERINLLNCTNLPYISSSIQNFN 244
           G  +  +L  + L ++     +           E   L      N  NL     S     
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA--LE 252

Query: 245 NLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIE------------ 292
            L  L++             Y+   I   F+   N++ F LVS  I              
Sbjct: 253 GLCNLTI----EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQH 308

Query: 293 LRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGC--SNLET 350
           L L N +  + P+    L +L+ L  +  K     + S   L SL +L+L     S    
Sbjct: 309 LELVNCKFGQFPTL--KLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGC 364

Query: 351 FPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEK--LENLKSL 408
             +       L  +DL    +  + S+   LE L  LD    + L  + E     +L++L
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNL 423

Query: 409 KYLNAEFSAIGQLPSSI-SDLNQLKKLKFSGCR--GLVLPPLLSGLSSLTELHLTDCNIT 465
            YL+   +      + I + L+ L+ LK +G       LP + + L +LT L L+ C + 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 466 EIPADI-GSLSSIVWLALSGNHFERLPTSV-KQLSQLRYLHLSN------CNMLQSL 514
           ++      SLSS+  L ++ N  + +P  +  +L+ L+ + L        C  +  L
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 99.8 bits (249), Expect = 5e-22
 Identities = 81/452 (17%), Positives = 152/452 (33%), Gaps = 80/452 (17%)

Query: 100 LNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQ-GLRYLPEE----- 153
           L+LS+     ++   + ++S+L  L                  L    ++ L        
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTL-----------------ILTGNPIQSLALGAFSGL 99

Query: 154 --LRYLHWHQYSLKTLPLN-FDP-ENLIELNLPYSNVEQIWEGK--KQAFKLKFIDLHHS 207
             L+ L   + +L +L        + L ELN+ ++ ++     +       L+ +DL  +
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 208 QYLTKIP--DLVETPNLERINL---LNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPR 262
           + +  I   DL     +  +NL   L+   + +I         L  L+L      ++  +
Sbjct: 160 K-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218

Query: 263 NIYFRSP-------IAVDFSDCVNLTEFP------LVSGNIIELRL--WNTRIEEVPSSI 307
                         +  +F +  NL +F       L +  I E RL   +  ++++    
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 308 ECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLR 367
            CLTN+ +  L     ++RV            LEL  C     FP +  K++ L  +   
Sbjct: 279 NCLTNVSSFSLVSVT-IERVK-DFSYNFGWQHLELVNCK-FGQFPTL--KLKSLKRLTFT 333

Query: 368 ETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISD 427
                N  S ++ L  L  LDL                          S  G    S   
Sbjct: 334 SNKGGNAFSEVD-LPSLEFLDLSRN---------------------GLSFKGCCSQSDFG 371

Query: 428 LNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADI--GSLSSIVWLALSGN 485
              LK L  S    + +     GL  L  L     N+ ++       SL ++++L +S  
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 486 HFERLPTSV-KQLSQLRYLHLSNCNMLQSLPE 516
           H       +   LS L  L ++  +  ++   
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 99.8 bits (249), Expect = 5e-22
 Identities = 68/427 (15%), Positives = 133/427 (31%), Gaps = 74/427 (17%)

Query: 150 LPEELRYLHWHQYSLKTLPLN-FDP-ENLIELNLPYSNVEQIWEGKKQAF----KLKFID 203
           LP   + L      L+ L    F     L  L+L    ++ I +G   A+     L  + 
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG---AYQSLSHLSTLI 82

Query: 204 LHHSQYLTKIPD--LVETPNLERINLLNC--TNLPYISSSIQNFNNLSVLSLAGCRSLVS 259
           L  +  +  +         +L+++  +     +L   +  I +   L  L++A    + S
Sbjct: 83  LTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLE--NFPIGHLKTLKELNVAHNL-IQS 138

Query: 260 FPRNIYFRSPIA---VDFSDCV-------NLTEFPLVSGNIIELRLWNTRIEEVPSSIEC 309
           F    YF +      +D S          +L     +    + L L    +  +      
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 310 LTNLETLDLSFCKRLKRVSTSIC------KLKSLCWLELGGCSNLETFPE-ILEKMEHLL 362
              L  L L        V  +        ++  L   E     NLE F +  LE + +L 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 363 EIDLRETAIRNLPSSIEY----LEGLRKLDLGDCSELASLPE--KLENLKSLKYLNAEFS 416
             + R   +      I      L  +    L   + +  + +       + L+ +N +F 
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNFGWQHLELVNCKFG 317

Query: 417 AIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLS-------------------------GL 451
               L      L  LK+L F+  +G      +                          G 
Sbjct: 318 QFPTLK-----LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 452 SSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSV--KQLSQLRYLHLSNCN 509
           +SL  L L+   +  + ++   L  +  L    ++ +++        L  L YL +S+  
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-T 431

Query: 510 MLQSLPE 516
             +    
Sbjct: 432 HTRVAFN 438

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.1 bits (203), Expect = 3e-16
 Identities = 60/258 (23%), Positives = 97/258 (37%), Gaps = 46/258 (17%)

Query: 299 RIEEVPSSIECLTNLETLDLSFCKRLKRV-STSICKLKSLCWLELGGC--SNLETFPEIL 355
              ++P ++    + + LDLSF   L+ + S S      L  L+L  C    +E      
Sbjct: 18  NFYKIPDNLP--FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIE--DGAY 72

Query: 356 EKMEHLLEIDLRETAIRNLPSSI-EYLEGLRKLDLGDCSELASLPEK-LENLKSLKYLNA 413
           + + HL  + L    I++L       L  L+KL   + + LASL    + +LK+LK LN 
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNV 131

Query: 414 EFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPA-DIG 472
                          N ++  K        LP   S L++L  L L+   I  I   D+ 
Sbjct: 132 AH-------------NLIQSFK--------LPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 473 SLSS----IVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPI--------- 519
            L       + L LS N    +     +  +L  L L N     ++ +  I         
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230

Query: 520 YLVYLEAKNCKRLQTLPE 537
            LV  E +N   L+   +
Sbjct: 231 RLVLGEFRNEGNLEKFDK 248

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 4/81 (4%)

Query: 439 CRGLVLPPLLSGL-SSLTELHLTDCNITEIPADI-GSLSSIVWLALSGNHFERLPTSV-K 495
           C  L    +   L  S   L L+   +  + +    S   +  L LS    + +     +
Sbjct: 14  CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73

Query: 496 QLSQLRYLHLSNCNMLQSLPE 516
            LS L  L L+  N +QSL  
Sbjct: 74  SLSHLSTLILTG-NPIQSLAL 93

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 455 TELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLP-TSVKQLSQLRYLHLSNCNMLQS 513
                 + N  +IP ++    S   L LS N    L   S     +L+ L LS    +Q+
Sbjct: 10  ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-CEIQT 66

Query: 514 LPE 516
           + +
Sbjct: 67  IED 69

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  123 bits (311), Expect = 2e-29
 Identities = 81/456 (17%), Positives = 149/456 (32%), Gaps = 55/456 (12%)

Query: 86  LKKNKGTDAIEGILLNLSKTRDIHLDGNV--------FVNMSNLRFLKFYMPEYKGVPIM 137
           L  N  +           K + +    N           ++     L   +    G  I 
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL---NGNDIA 192

Query: 138 SSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAF 197
             +        +               K L  +   ++L        + E I     +  
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNS-TIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 198 K---LKFIDLHHSQYLTKIPD--LVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLA 252
               ++ I+L        I          L+ ++L    +L  + S +   + L  L L+
Sbjct: 252 CEMSVESINLQKHY-FFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLS 309

Query: 253 GCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTN 312
             +          F +   +  S+  +LT   +  GN   L L           +E L N
Sbjct: 310 ANK----------FENLCQISASNFPSLTHLSI-KGNTKRLEL-------GTGCLENLEN 351

Query: 313 LETLDLSFCK--RLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETA 370
           L  LDLS          +  +  L  L  L L     L    E  ++   L  +DL  T 
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411

Query: 371 IRNL--PSSIEYLEGLRKLDLGDCSELASLPEK-LENLKSLKYLNAEF----SAIGQLPS 423
           ++     S  + L  L+ L+L     L    E+  + L +L++LN +         Q  +
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

Query: 424 SISDLNQLKKLKFSGCRGLVLPP-LLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLAL 482
           S+  L +L+ L  S C    +     + L  +  + L+   +T    +  S    ++L L
Sbjct: 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNL 530

Query: 483 SGNHFERL-PTSVKQLSQLRYLHLSN------CNML 511
           + NH   + P+ +  LSQ R ++L        C+ +
Sbjct: 531 ASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  115 bits (291), Expect = 5e-27
 Identities = 54/351 (15%), Positives = 105/351 (29%), Gaps = 44/351 (12%)

Query: 199 LKFIDLHHSQYLTKIP--DLVETPNLERINLLNC--TNLPYISSSIQNFNNLSVLSLAGC 254
            + ++   +  L  I         NL  ++L  C    +     + Q+ + L  L L   
Sbjct: 35  TECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQIYWIH--EDTFQSQHRLDTLVLTAN 91

Query: 255 RSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEV-PSSIECLTNL 313
             L+                S    L            L    T I  +    +     L
Sbjct: 92  P-LIFMAETA---------LSGPKALKH----------LFFIQTGISSIDFIPLHNQKTL 131

Query: 314 ETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHL--LEIDLRETAI 371
           E+L L                + L  L+    +      E +  ++    L ++L    I
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191

Query: 372 RNLPSSIEYLEGLRKLDLGDCSELASLPE-----KLENLKSLKYLNAEFSAIGQLPSSIS 426
             +          + L+ G    L  + +      +++L    + + +   I        
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 427 DLNQLKKLKFSGCRGLVLPP-LLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGN 485
               ++ +         +        S L EL LT  +++E+P+ +  LS++  L LS N
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN 311

Query: 486 HFERLPTSV-KQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTL 535
            FE L          L +L +        L    +       +N + L+ L
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL-------ENLENLREL 355

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  111 bits (279), Expect = 2e-25
 Identities = 69/409 (16%), Positives = 121/409 (29%), Gaps = 62/409 (15%)

Query: 163 SLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAF----KLKFIDLHHSQYLTKIPD--L 216
            L  +P    P +   L     N   +   +   F     L F+DL   Q +  I +   
Sbjct: 23  GLNEIPGTL-PNSTECLEF-SFN--VLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTF 77

Query: 217 VETPNLERINLLNC--TNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDF 274
                L+ + L       +    +++     L  L                  S   +  
Sbjct: 78  QSQHRLDTLVLTANPLIFMA--ETALSGPKALKHLFFIQTG----------ISSIDFIPL 125

Query: 275 SDCVNLTEFPLVSGNII---------------ELRLWNTRIEEV-PSSIECLTNLETLDL 318
            +   L    L   N I                L   N  I  +    +  L     L L
Sbjct: 126 HNQKTLESLYL-GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184

Query: 319 SFCK-RLKRVSTSICKLKSLCWLELGGCSNLETFPEILE--KMEHLLEIDLRETAIRNLP 375
           +     +  +            L  GG  NL    + L+   ++ L      +    ++ 
Sbjct: 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244

Query: 376 SSIE---YLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLK 432
            ++        +  ++L                  L+ L+   + + +LPS +  L+ LK
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLK 304

Query: 433 KLKFSGCR-GLVLPPLLSGLSSLTELHLTDCNI--TEIPADIGSLSSIVWLALSGNHFER 489
           KL  S  +   +     S   SLT L +             + +L ++  L LS +  E 
Sbjct: 305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364

Query: 490 LPTSV---KQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTL 535
                   + LS L+ L+LS  N   SL            K C +L+ L
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSY-NEPLSLKTEAF-------KECPQLELL 405

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  110 bits (276), Expect = 4e-25
 Identities = 77/453 (16%), Positives = 129/453 (28%), Gaps = 101/453 (22%)

Query: 100 LNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQ-GLRYLPEELRYLH 158
           L+L++ +   +  + F +   L  L                  L    L ++ E      
Sbjct: 62  LDLTRCQIYWIHEDTFQSQHRLDTL-----------------VLTANPLIFMAET----- 99

Query: 159 WHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAF----KLKFIDLHHSQYLTKIP 214
               +L           L  L         I             L+ + L  +  ++ I 
Sbjct: 100 ----ALSGPK------ALKHLFF-IQT--GISSIDFIPLHNQKTLESLYLGSNH-ISSIK 145

Query: 215 DLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDF 274
                                          L VL                       D 
Sbjct: 146 L----------------------PKGFPTEKLKVLDFQNNA----------IHYLSKEDM 173

Query: 275 SDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRV--STSIC 332
           S     T         + L L    I  +          ++L+    + L  +       
Sbjct: 174 SSLQQATN--------LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNS 225

Query: 333 KLKSLCWLELGGCSNLETFPEILEKME--HLLEIDLRETAIRNL-PSSIEYLEGLRKLDL 389
            ++SL         + +  P + E +    +  I+L++    N+  ++     GL++LDL
Sbjct: 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285

Query: 390 GDCSELASLPEKLENLKSLKYLNAEFSAIGQLPS-SISDLNQLKKLKFSGC--RGLVLPP 446
                L+ LP  L  L +LK L    +    L   S S+   L  L   G   R  +   
Sbjct: 286 TATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

Query: 447 LLSGLSSLTELHLTDCNITEIPADIGS---LSSIVWLALSGNHFERLPTSV-KQLSQLRY 502
            L  L +L EL L+  +I            LS +  L LS N    L T   K+  QL  
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404

Query: 503 LHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTL 535
           L L+    L+       +      +N   L+ L
Sbjct: 405 LDLAF-TRLKVKDAQSPF------QNLHLLKVL 430

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 13/102 (12%)

Query: 456 ELHLTDCNITEIPADIGSLSSIVWLALSGNHFERL-PTSVKQLSQLRYLHLSNCNMLQSL 514
             +  +  + EIP  +   +S   L  S N    +  T+  +L  L +L L+ C +    
Sbjct: 16  TYNCENLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 515 PELPIYLVYLE----AKNCKRLQTLPEI----PSSVEELDAS 548
            +       L+      N   L  + E     P +++ L   
Sbjct: 74  EDTFQSQHRLDTLVLTAN--PLIFMAETALSGPKALKHLFFI 113

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  123 bits (310), Expect = 3e-29
 Identities = 81/493 (16%), Positives = 149/493 (30%), Gaps = 74/493 (15%)

Query: 86  LKKNKGTDAIEGILLNLSKTRDIHLDGN--------VFVNMSNLRFLKFYMPEYKGVPIM 137
           L  N          +       + L  N          V + NL+ L           I 
Sbjct: 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS-----NNKIQ 158

Query: 138 SSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLN--FDPENLIELNLPYSNVEQIWEGKKQ 195
           + K             L+ L      +K            L  L L    +      K  
Sbjct: 159 ALKSEELDIFA--NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216

Query: 196 AF----KLKFIDLHHSQYLTKIPDLV----ETPNLERINLLNC--TNLPYISSSIQNFNN 245
                  ++ + L +SQ L+   +      +  NL  ++L       +   + S      
Sbjct: 217 LELANTSIRNLSLSNSQ-LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG--NDSFAWLPQ 273

Query: 246 LSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEV-P 304
           L    L               +   +       N+    L   +  +  +    + ++  
Sbjct: 274 LEYFFLEYNN----------IQHLFSHSLHGLFNVRYLNL-KRSFTKQSISLASLPKIDD 322

Query: 305 SSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEK------M 358
            S + L  LE L++         S     L +L +L L    +  +   +  +       
Sbjct: 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN--SFTSLRTLTNETFVSLAH 380

Query: 359 EHLLEIDLRETAIRNL-PSSIEYLEGLRKLDLGDCSELASLPEK-LENLKSLKYLNAEFS 416
             L  ++L +  I  +   +  +L  L  LDLG       L  +    L+++  +   ++
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

Query: 417 AIGQL-PSSISDLNQLKKLKFSGCR---GLVLPPLLSGLSSLTELHLTDCNITEIPAD-I 471
              QL  +S + +  L++L             P     L +LT L L++ NI  I  D +
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500

Query: 472 GSLSSIVWLALSGNHFERL---------PTSVKQLSQLRYLHLSNCNMLQSLPELPIYLV 522
             L  +  L L  N+  RL            +K LS L  L+L + N    +P       
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEVF--- 556

Query: 523 YLEAKNCKRLQTL 535
               K+   L+ +
Sbjct: 557 ----KDLFELKII 565

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  117 bits (296), Expect = 2e-27
 Identities = 92/546 (16%), Positives = 170/546 (31%), Gaps = 103/546 (18%)

Query: 100 LNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHW 159
           LNL+  +   L    F   S L  L         +          +  + LP  L+ L+ 
Sbjct: 30  LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE--------PELCQKLPM-LKVLNL 80

Query: 160 HQYSLKTLPLN--FDPENLIELNLPYSNVEQIWEGKKQAF----KLKFIDLHHSQYLTKI 213
               L  L         NL EL+L  SN   I + K   F     L  +DL H+  L+  
Sbjct: 81  QHNELSQLSDKTFAFCTNLTELHL-MSN--SIQKIKNNPFVKQKNLITLDLSHNG-LSST 136

Query: 214 PD--LVETPNLERINL---------------LNCTNLPY-----------ISSSIQNFNN 245
                V+  NL+ + L                  ++L                       
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196

Query: 246 LSVLSLAGCRSLVSFPRNIYFRSPIA----VDFSDCVNLTEFP------LVSGNIIELRL 295
           L  L L   +   S    +           +  S+   L+         L   N+  L L
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDL 255

Query: 296 WNTRIEEV-PSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETF--- 351
               +  V   S   L  LE   L +       S S+  L ++ +L L    +       
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR--SFTKQSIS 313

Query: 352 --------PEILEKMEHLLEIDLRETAIRNL-PSSIEYLEGLRKLDLGD-CSELASLPEK 401
                       + ++ L  +++ +  I  +  +    L  L+ L L +  + L +L  +
Sbjct: 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNE 373

Query: 402 L---ENLKSLKYLNAEFSAIGQL-PSSISDLNQLKKLKFSGCR--GLVLPPLLSGLSSLT 455
                    L  LN   + I ++   + S L  L+ L          +      GL ++ 
Sbjct: 374 TFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433

Query: 456 ELHLTDCNITEIPAD-IGSLSSIVWLALSGNHFERL---PTSVKQLSQLRYLHLSNCNML 511
           E++L+     ++  +    + S+  L L     + +   P+  + L  L  L LSN N +
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN-NNI 492

Query: 512 QSLPELPIYLVYLEAKNCKRLQTLPEIPSSVEELDASMLESIYEHSSGIMDGILFFDFTN 571
            ++ +  +       +  ++L+ L        +L  + L  +         G   +    
Sbjct: 493 ANINDDML-------EGLEKLEIL--------DLQHNNLARL---WKHANPGGPIYFLKG 534

Query: 572 CLKLNE 577
              L+ 
Sbjct: 535 LSHLHI 540

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  117 bits (294), Expect = 3e-27
 Identities = 87/492 (17%), Positives = 171/492 (34%), Gaps = 67/492 (13%)

Query: 100 LNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHW 159
           L LS  +        F  +  L  L  ++   +  P ++ K+ L+         +R L  
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGL--FLNNVQLGPSLTEKLCLELANT----SIRNLSL 229

Query: 160 HQYSLKTLP----LNFDPENLIELNLPYSNVEQIWEGK-KQAFKLKFIDLHHSQYLTKIP 214
               L T      L     NL  L+L Y+N+  +         +L++  L ++  +  + 
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN-IQHLF 288

Query: 215 D--LVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIY---FRSP 269
              L    N+  +NL    +    S S+ +   +   S    + L     N+        
Sbjct: 289 SHSLHGLFNVRYLNLKR--SFTKQSISLASLPKIDDFSFQWLKCLEHL--NMEDNDIPGI 344

Query: 270 IAVDFSDCVNLTEFPLVSGNIIE-------------------LRLWNTRIEEV-PSSIEC 309
            +  F+  +NL    L S +                      L L   +I ++   +   
Sbjct: 345 KSNMFTGLINLKYLSL-SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403

Query: 310 LTNLETLDLSFCKRLKRV--STSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLR 367
           L +LE LDL   + + +         L+++  + L     L+        +  L  + LR
Sbjct: 404 LGHLEVLDLGLNE-IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462

Query: 368 ETAIRNL---PSSIEYLEGLRKLDLGDCSELASLPEK-LENLKSLKYLN---------AE 414
             A++N+   PS  + L  L  LDL + + +A++ +  LE L+ L+ L+          +
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLARLWK 521

Query: 415 FSAIGQLPSSISDLNQLKKLKFSGCRGLVLPP-LLSGLSSLTELHLTDCNITEIPADI-G 472
            +  G     +  L+ L  L         +P  +   L  L  + L   N+  +PA +  
Sbjct: 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581

Query: 473 SLSSIVWLALSGNHFERLPTSV--KQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCK 530
           +  S+  L L  N    +   V       L  L +       +   +  ++ ++   +  
Sbjct: 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETH-- 639

Query: 531 RLQTLPEIPSSV 542
               +PE+ S  
Sbjct: 640 --TNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 99.7 bits (249), Expect = 1e-21
 Identities = 49/237 (20%), Positives = 87/237 (36%), Gaps = 19/237 (8%)

Query: 308 ECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETF-PEILEKMEHLLEIDL 366
           +C  + E  D S   +L +V   +    ++  L L     L         +   L  +D+
Sbjct: 1   KCTVSHEVADCSHL-KLTQVPDDL--PTNITVLNLTHN-QLRRLPAANFTRYSQLTSLDV 56

Query: 367 RETAIRNL-PSSIEYLEGLRKLDLGDCSELASLPEK-LENLKSLKYLNAEFSAIGQL-PS 423
               I  L P   + L  L+ L+L     L+ L +K      +L  L+   ++I ++  +
Sbjct: 57  GFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115

Query: 424 SISDLNQLKKLKFSGCRGLVLPP-LLSGLSSLTELHLTDCNITEIPAD---IGSLSSIVW 479
                  L  L  S              L +L EL L++  I  + ++   I + SS+  
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 480 LALSGNHFERL-PTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTL 535
           L LS N  +   P     + +L  L L+N  +  SL E     +         ++ L
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-----ANTSIRNL 227

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  120 bits (304), Expect = 1e-28
 Identities = 85/467 (18%), Positives = 145/467 (31%), Gaps = 67/467 (14%)

Query: 86  LKKNKGTDAIEGILLNLSKTRDIHLDGN--------VFVNMSNLRFLKFYMPEYKGVPIM 137
           L  N       G    LS  + +                ++  L+ L       +   + 
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 138 SSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIEL-NLPYSNVEQIWEGKKQA 196
               +L          L +L      ++++       +L  L  +P  N+          
Sbjct: 143 EYFSNLTN--------LEHLDLSSNKIQSIY----CTDLRVLHQMPLLNLS--------- 181

Query: 197 FKLKFIDLHHSQYLTKIPDLVETPNLERINLL-NCTNLPYISSSIQNFNNLSVLSLAGCR 255
                +DL  +      P   +   L ++ L  N  +L  + + IQ    L V  L    
Sbjct: 182 -----LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL---- 232

Query: 256 SLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLET 315
            L  F                  NL      +     L   +  ++++     CLTN+ +
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNL------TIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286

Query: 316 LDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLP 375
             L     ++RV            LEL  C   +     L+ ++ L     +        
Sbjct: 287 FSLVSVT-IERVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG----GNA 340

Query: 376 SSIEYLEGLRKLDLGD--CSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKK 433
            S   L  L  LDL     S      +      SLKYL+  F+ +  + S+   L QL+ 
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400

Query: 434 LKFSGCR--GLVLPPLLSGLSSLTELHLTDCNITEIPAD-IGSLSSIVWLALSGNHFER- 489
           L F       +    +   L +L  L ++  +           LSS+  L ++GN F+  
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 490 -LPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTL 535
            LP    +L  L +L LS    L+ L             +   LQ L
Sbjct: 461 FLPDIFTELRNLTFLDLSQ-CQLEQLSPTAF-------NSLSSLQVL 499

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  118 bits (298), Expect = 6e-28
 Identities = 92/498 (18%), Positives = 162/498 (32%), Gaps = 88/498 (17%)

Query: 86  LKKNKGTDAIEGILLNLSKTRDIHLDGN---------VFVNMSNLRFLKFYMPEYKGVPI 136
             +          + +L   +++++  N          F N++NL  L   +   K   I
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL--DLSSNK---I 161

Query: 137 MSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLN-FDPENLIELNLPYSNVEQIWEGKKQ 195
            S      + L  +P     L      +  +    F    L +L L  +           
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL------N 215

Query: 196 AFKLKFIDLHHSQYLT-KIPDLVETPNLERINLLNCTNLPY-----------------IS 237
             K     L   +     + +     NLE+ +      L                   I 
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

Query: 238 SSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFP-LVSGNIIELRLW 296
                  N+S  SL    ++       Y      ++  +C    +FP L   ++  L   
Sbjct: 276 DLFNCLTNVSSFSLVSV-TIERVKDFSYNFGWQHLELVNC-KFGQFPTLKLKSLKRLTFT 333

Query: 297 NTRIEEVPSSIECLTNLETLDLSFCK--RLKRVSTSICKLKSLCWLELGGCSNLETFPEI 354
           + +     S ++ L +LE LDLS          S S     SL +L+L     + T    
Sbjct: 334 SNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSN 391

Query: 355 LEKMEHLLEIDLRETAIRNL--PSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLN 412
              +E L  +D + + ++ +   S    L  L  LD+       +       L SL+ L 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 413 AEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPAD-I 471
                       ++  N  +           LP + + L +LT L L+ C + ++     
Sbjct: 452 ------------MAG-NSFQ--------ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 472 GSLSSIVWLALSGNHFERLPTSV-KQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCK 530
            SLSS+  L +S N+F  L T   K L+ L+ L  S  N + +  +              
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKK-------------- 535

Query: 531 RLQTLPEIPSSVEELDAS 548
             Q L   PSS+  L+ +
Sbjct: 536 --QELQHFPSSLAFLNLT 551

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  104 bits (262), Expect = 2e-23
 Identities = 76/419 (18%), Positives = 137/419 (32%), Gaps = 64/419 (15%)

Query: 86  LKKNKGTDAIEGILLNLSKTRDIHLDGN---------VFVNMSNLRFLKFYMPEYKGVPI 136
           L  N       G    +     + L  N             ++ L   +  + E++    
Sbjct: 184 LSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG- 241

Query: 137 MSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQA 196
                +L++  +   E L  L   ++ L  L    D    +   L               
Sbjct: 242 -----NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT-------------- 282

Query: 197 FKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRS 256
             +    L     + ++ D       + + L+NC            F     L L   + 
Sbjct: 283 -NVSSFSLVSVT-IERVKDFSYNFGWQHLELVNC-----------KFGQFPTLKLKSLKR 329

Query: 257 LVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETL 316
           L         +   A    D  +L    L S N +      +       S    T+L+ L
Sbjct: 330 L----TFTSNKGGNAFSEVDLPSLEFLDL-SRNGL------SFKGCCSQSDFGTTSLKYL 378

Query: 317 DLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETF--PEILEKMEHLLEIDLRETAIRNL 374
           DLSF   +  +S++   L+ L  L+     NL+      +   + +L+ +D+  T  R  
Sbjct: 379 DLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 375 -PSSIEYLEGLRKLDLGDCS-ELASLPEKLENLKSLKYLNAEFSAIGQL-PSSISDLNQL 431
                  L  L  L +   S +   LP+    L++L +L+     + QL P++ + L+ L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 432 KKLKFSGCRGLVLPP-LLSGLSSLTELHLTDCNITEIPADI--GSLSSIVWLALSGNHF 487
           + L  S      L       L+SL  L  +  +I            SS+ +L L+ N F
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  103 bits (258), Expect = 6e-23
 Identities = 68/436 (15%), Positives = 133/436 (30%), Gaps = 73/436 (16%)

Query: 150 LPEELRYLHWHQYSLKTL-PLNFDP-ENLIELNLPYSNVEQIWEGKKQAF----KLKFID 203
           LP   + L      L+ L   +F     L  L+L    ++ I +G   A+     L  + 
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG---AYQSLSHLSTLI 82

Query: 204 LHHSQYLTKIPD-LVETPNLERINLLNC--TNLPYISSSIQNFNNLSVLSLAGCRSLVSF 260
           L  +   +          +L+++  +     +L   +  I +   L  L++A    + SF
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVETNLASL--ENFPIGHLKTLKELNVAHNL-IQSF 139

Query: 261 P----------------RNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVP 304
                             +   +S    D      +    L       L L    +  + 
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL------SLDLSLNPMNFIQ 193

Query: 305 SSIECLTNLETLDLSFCKRLKRVSTSIC------KLKSLCWLELGGCSNLETFPE-ILEK 357
                   L  L L        V  +        ++  L   E     NLE F +  LE 
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

Query: 358 MEHLLEIDLRETAIR----NLPSSIEYLEGLRKLDLGDCSELASLPE--KLENLKSLKYL 411
           + +L   + R   +     ++      L  +    L   + +  + +       + L+ +
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNFGWQHLELV 312

Query: 412 NAEFSAIGQL-----------------PSSISDLNQLKKLKFSGCR---GLVLPPLLSGL 451
           N +F     L                   S  DL  L+ L  S               G 
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 452 SSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERL--PTSVKQLSQLRYLHLSNCN 509
           +SL  L L+   +  + ++   L  +  L    ++ +++   +    L  L YL +S+ +
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 510 MLQSLPELPIYLVYLE 525
              +   +   L  LE
Sbjct: 433 TRVAFNGIFNGLSSLE 448

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 91.6 bits (228), Expect = 2e-19
 Identities = 55/315 (17%), Positives = 99/315 (31%), Gaps = 48/315 (15%)

Query: 272 VDFSDCVNLTEFPL-VSGNIIELRLWNTRIEEV-PSSIECLTNLETLDLSFCKRLKRVST 329
               +  N  + P  +  +   L L    +  +   S      L+ LDLS C+       
Sbjct: 12  YQCMEL-NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 330 SICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNL-PSSIEYLEGLRKLD 388
           +   L  L  L L G             +  L ++   ET + +L    I +L+ L++L+
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 389 LGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCR-GLVLPPL 447
           +               ++S K           LP   S+L  L+ L  S  +   +    
Sbjct: 131 VAHN-----------LIQSFK-----------LPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 448 LSGLSSLT----ELHLTDCNITEIPADIGSLSSIVWLALSGNHFER--LPTSVKQLSQLR 501
           L  L  +      L L+   +  I         +  L L  N      + T ++ L+ L 
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

Query: 502 YLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEIPSSVEELDASMLESIYEHSSGIM 561
              L      ++   L       +    + L  L     ++EE   + L+   +      
Sbjct: 229 VHRLVL-GEFRNEGNLEK----FDKSALEGLCNL-----TIEEFRLAYLDYYLDDIID-- 276

Query: 562 DGILFFDFTNCLKLN 576
              LF   TN    +
Sbjct: 277 ---LFNCLTNVSSFS 288

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 89.3 bits (222), Expect = 2e-18
 Identities = 59/369 (15%), Positives = 117/369 (31%), Gaps = 66/369 (17%)

Query: 204 LHHSQYLTKIPDLVETPNLERINLLNCTNLPYI-SSSIQNFNNLSVLSLAGCRSLVSFPR 262
                   KIPD +   + + ++L     L ++ S S  +F  L VL L+ C        
Sbjct: 13  QCMELNFYKIPDNL-PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 263 NIY--------------FRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEV-PSSI 307
                             +S     FS   +L           +L    T +  +    I
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ----------KLVAVETNLASLENFPI 120

Query: 308 ECLTNLETLDLSFCKRLKRV--STSICKLKSLCWLELGGCSNLETFPEILEKMEHL---- 361
             L  L+ L+++    ++          L +L  L+L        +   L  +  +    
Sbjct: 121 GHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 362 LEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEK-LENLKSLKYLN-------- 412
           L +DL    +  +         L KL L +  +  ++ +  ++ L  L+           
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 413 ------AEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITE 466
                  + SA+  L +   +  +L  L +       +  L + L++++   L    I  
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYY---LDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 467 IPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEA 526
           +  D         L L    F + PT   +L  L+ L  ++     +  E+         
Sbjct: 297 VK-DFSYNFGWQHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFSEV--------- 344

Query: 527 KNCKRLQTL 535
            +   L+ L
Sbjct: 345 -DLPSLEFL 352

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  115 bits (290), Expect = 2e-28
 Identities = 45/320 (14%), Positives = 101/320 (31%), Gaps = 41/320 (12%)

Query: 236 ISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRL 295
           I    QN N   +  +     L     ++              N+ E          L L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSS-LKQALASL---------RQSAWNVKE----------LDL 41

Query: 296 WNTRIEEVP-SSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEI 354
               + ++  + +   T LE L+LS    L      +  L +L  L+L     ++     
Sbjct: 42  SGNPLSQISAADLAPFTKLELLNLSSNV-LYETL-DLESLSTLRTLDLNNN-YVQELLV- 97

Query: 355 LEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEK-LENLKSLKYLNA 413
                 +  +      I  +  S    +G + + L +   +  L +        ++YL+ 
Sbjct: 98  ---GPSIETLHAANNNISRVSCSR--GQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDL 151

Query: 414 EFSAIGQLP--SSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADI 471
           + + I  +      +  + L+ L         +   +   + L  L L+   +  +  + 
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEF 210

Query: 472 GSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIY-----LVYLEA 526
            S + + W++L  N    +  +++    L +  L   N          +     +  +  
Sbjct: 211 QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG-NGFHCGTLRDFFSKNQRVQTVAK 269

Query: 527 KNCKRLQTLPEIPSSVEELD 546
           +  K+L    E   +V  L 
Sbjct: 270 QTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 90.4 bits (225), Expect = 6e-20
 Identities = 40/327 (12%), Positives = 94/327 (28%), Gaps = 42/327 (12%)

Query: 198 KLKFIDLHHSQYLTKIPD--LVETPNLERINLLNC--TNLPYISSSIQNFNNLSVLSLAG 253
           + K   +  S  L +          N++ ++L     + +   ++ +  F  L +L+L+ 
Sbjct: 11  RYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPLSQIS--AADLAPFTKLELLNLSS 67

Query: 254 CRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNL 313
              L               D      L            L L N  ++E+        ++
Sbjct: 68  NV-LYETL-----------DLESLSTLRT----------LDLNNNYVQELLV----GPSI 101

Query: 314 ETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPE-ILEKMEHLLEIDLRETAIR 372
           ETL  +    + RVS S    +    + L     +    +        +  +DL+   I 
Sbjct: 102 ETLHAANN-NISRVSCSR--GQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEID 157

Query: 373 NLP--SSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQ 430
            +         + L  L+L     +  +         LK L+   + +  +         
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAG 215

Query: 431 LKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERL 490
           +  +     + +++   L    +L    L                +     ++    ++L
Sbjct: 216 VTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275

Query: 491 PTSVKQLSQLRYLHLSNCNMLQSLPEL 517
               ++   +  L        + LP  
Sbjct: 276 TGQNEEECTVPTLGHYGAYCCEDLPAP 302

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 54/385 (14%), Positives = 107/385 (27%), Gaps = 89/385 (23%)

Query: 94  AIEGILLNLSKTRDIHLDGN--------VFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQ 145
           AI  I  N ++ +   +  +        +  +  N++ L                  L  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKEL-----------------DLSG 43

Query: 146 -GLRYLPEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAF----KLK 200
             L  +             L           L  LNL  + + +              L+
Sbjct: 44  NPLSQISAA---------DLAPFT------KLELLNLSSNVLYET-----LDLESLSTLR 83

Query: 201 FIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSF 260
            +DL+++  + ++      P++E ++  N  N+  +S S         + LA  + +   
Sbjct: 84  TLDLNNNY-VQELLVG---PSIETLHAAN-NNISRVSCSR--GQGKKNIYLANNK-ITML 135

Query: 261 PRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVP--SSIECLTNLETLDL 318
                       D      +            L L    I+ V           LE L+L
Sbjct: 136 RDL---------DEGCRSRVQ----------YLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 319 SFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSI 378
            +   +  V   +     L  L+L     L       +    +  I LR   +  +  ++
Sbjct: 177 QYN-FIYDVKGQVV-FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL 233

Query: 379 EYLEGLRKLDLGD----CSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKL 434
            + + L   DL      C  L     K + ++++         +         +  L   
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA--KQTVKKLTGQNEEECTVPTLGHY 291

Query: 435 KFSGCRGLVLPPLLSGLSSLTELHL 459
               C  L   P    L +L   H 
Sbjct: 292 GAYCCEDL-PAPFADRLIALGHHHH 315

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  115 bits (289), Expect = 1e-27
 Identities = 68/363 (18%), Positives = 131/363 (36%), Gaps = 46/363 (12%)

Query: 163 SLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAF-KLKFIDLHHSQYLTKIPD--LVET 219
            +     +    N   +    S + ++      +F +++ ++L+  Q + +I        
Sbjct: 34  DVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYA 92

Query: 220 PNLERINLLNCTNLPYISSSI-QNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCV 278
             ++++ +     + Y+   + QN   L+VL L     L S PR I         F +  
Sbjct: 93  HTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGI---------FHNTP 141

Query: 279 NLTEFPLVSGNIIELRLWNTRIEEVPSSI-ECLTNLETLDLSFCKRLKRVSTSICKLKSL 337
            LT           L + N  +E +     +  T+L+ L LS   RL  V  S+  + SL
Sbjct: 142 KLTT----------LSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSL--IPSL 188

Query: 338 CWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELAS 397
               +     L T          + E+D    +I  +   +     L  L L     L  
Sbjct: 189 FHANVSYN-LLSTLA----IPIAVEELDASHNSINVVRGPV--NVELTILKLQHN-NLTD 240

Query: 398 LPEKLENLKSLKYLNAEFSAIGQLPSSI-SDLNQLKKLKFSGCRGLVLPPLLSGLSSLTE 456
               L N   L  ++  ++ + ++       + +L++L  S  R + L      + +L  
Sbjct: 241 TAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKV 299

Query: 457 LHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSN----CNMLQ 512
           L L+  ++  +  +      +  L L  N    L  S      L+ L LS+    CN L+
Sbjct: 300 LDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLST--HHTLKNLTLSHNDWDCNSLR 357

Query: 513 SLP 515
           +L 
Sbjct: 358 ALF 360

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  107 bits (270), Expect = 3e-25
 Identities = 50/335 (14%), Positives = 103/335 (30%), Gaps = 55/335 (16%)

Query: 222 LERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLT 281
              +++   T   Y        NN  +++      +   P  +               + 
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAAL---------LDSFRQVE 72

Query: 282 EFPLVSGNIIELRLWNTRIEEVPSSI-ECLTNLETLDLSFCKRLKRVSTSI-CKLKSLCW 339
                      L L + +IEE+ +        ++ L + F   ++ +   +   +  L  
Sbjct: 73  ----------LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 121

Query: 340 LELGGCSNLETFP-EILEKMEHLLEIDLRETAIRNLPSSI-EYLEGLRKLDLGDCSELAS 397
           L L    +L + P  I      L  + +    +  +     +    L+ L L     L  
Sbjct: 122 LVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTH 179

Query: 398 LPEKLENLKSLKYLNAEFSAIGQLPSSIS----DL--NQLKKLKFSGCRGLVL------- 444
           +   L  + SL + N  ++ +  L   I+    D   N +  ++      L +       
Sbjct: 180 VD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN 237

Query: 445 ---PPLLSGLSSLTELHLTDCNITEIPADI-GSLSSIVWLALSGNHFERLPTSVKQLSQL 500
                 L     L E+ L+   + +I       +  +  L +S N    L    + +  L
Sbjct: 238 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTL 297

Query: 501 RYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTL 535
           + L LS+ N L  +                RL+ L
Sbjct: 298 KVLDLSH-NHLLHVER--------NQPQFDRLENL 323

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 85.1 bits (211), Expect = 9e-18
 Identities = 48/416 (11%), Positives = 119/416 (28%), Gaps = 99/416 (23%)

Query: 100 LNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQ-GLRYLPEELRYLH 158
           +    +    L   +  +   +  L                 +L+   +  +        
Sbjct: 50  VTFKNSTMRKLPAALLDSFRQVELL-----------------NLNDLQIEEIDTY----- 87

Query: 159 WHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAF----KLKFIDLHHSQYLTKIP 214
               +            + +L + ++ +  +       F     L  + L  +  L+ +P
Sbjct: 88  ----AFAYAH------TIQKLYMGFNAIRYL---PPHVFQNVPLLTVLVLERND-LSSLP 133

Query: 215 DLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDF 274
                                      N   L+ LS++    L     +          F
Sbjct: 134 R----------------------GIFHNTPKLTTLSMSNNN-LERIEDDT---------F 161

Query: 275 SDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKL 334
               +L            L+L + R+  V  S+  + +L   ++S+        +++   
Sbjct: 162 QATTSLQ----------NLQLSSNRLTHVDLSL--IPSLFHANVSYNL-----LSTLAIP 204

Query: 335 KSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSE 394
            ++  L+     ++            L  + L+   + +    +    GL ++DL    E
Sbjct: 205 IAVEELDASHN-SINVVRG--PVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYN-E 259

Query: 395 LASLPEK-LENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSS 453
           L  +       ++ L+ L    + +  L      +  LK L  S    L +         
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR 319

Query: 454 LTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCN 509
           L  L+L   +I  +   + +  ++  L LS N ++           +    + + +
Sbjct: 320 LENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDAD 372

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.8 bits (179), Expect = 9e-14
 Identities = 23/147 (15%), Positives = 62/147 (42%), Gaps = 5/147 (3%)

Query: 374 LPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSI-SDLNQLK 432
           + S+++Y      + +   ++      +   L + K +  + S + +LP+++     Q++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 433 KLKFSGCRGLVLPP-LLSGLSSLTELHLTDCNITEIPADI-GSLSSIVWLALSGNHFERL 490
            L  +  +   +     +   ++ +L++    I  +P  +  ++  +  L L  N    L
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 132

Query: 491 PTSV-KQLSQLRYLHLSNCNMLQSLPE 516
           P  +     +L  L +SN N L+ + +
Sbjct: 133 PRGIFHNTPKLTTLSMSN-NNLERIED 158

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 67.4 bits (165), Expect = 5e-12
 Identities = 49/337 (14%), Positives = 101/337 (29%), Gaps = 77/337 (22%)

Query: 96  EGILLNLSKTRDIHLDGN--------VFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQ-G 146
                     + +++  N        VF N+  L  L                  L++  
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL-----------------VLERND 128

Query: 147 LRYLPEE-------LRYLHWHQYSLKTLPLN-FDP-ENLIELNLPYSNVEQIWEGKKQAF 197
           L  LP         L  L     +L+ +  + F    +L  L L  + +  +        
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLI 185

Query: 198 K-LKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRS 256
             L   ++ ++  L+ +        +E ++  +  ++  +   +     L++L L     
Sbjct: 186 PSLFHANVSYNL-LSTLAIP---IAVEELDASHN-SINVVRGPV--NVELTILKLQHNN- 237

Query: 257 LVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSI-ECLTNLET 315
           L                  +   L           E+ L    +E++       +  LE 
Sbjct: 238 LTDTA-----------WLLNYPGLV----------EVDLSYNELEKIMYHPFVKMQRLER 276

Query: 316 LDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLP 375
           L +S   RL  ++     + +L  L+L    +L        + + L  + L   +I  L 
Sbjct: 277 LYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIVTLK 334

Query: 376 SSIEYLEGLRKLDLGD----CSELASLPEKLENLKSL 408
            S      L+ L L      C+ L +L   +      
Sbjct: 335 LST--HHTLKNLTLSHNDWDCNSLRALFRNVARPAVD 369

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  110 bits (278), Expect = 6e-27
 Identities = 62/247 (25%), Positives = 102/247 (41%), Gaps = 18/247 (7%)

Query: 292 ELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGC--SNLE 349
           E+R  +  +  VP+ I   ++   L+L   K          KL  L  L L     S   
Sbjct: 11  EIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 350 TFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEK--LENLKS 407
              +       L  +DL    +  + S+   LE L  LD    + L  + E     +L++
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRN 127

Query: 408 LKYLNAEFSAIGQLPSSI-SDLNQLKKLKFSGCRGL--VLPPLLSGLSSLTELHLTDCNI 464
           L YL+   +      + I + L+ L+ LK +G       LP + + L +LT L L+ C +
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

Query: 465 TEIPADI-GSLSSIVWLALSGNHFERLPTSV-KQLSQLRYLHLSNCNMLQSLPE-----L 517
            ++      SLSS+  L +S N+F  L T   K L+ L+ L  S  N + +  +      
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHF 246

Query: 518 PIYLVYL 524
           P  L +L
Sbjct: 247 PSSLAFL 253

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 55/290 (18%), Positives = 98/290 (33%), Gaps = 52/290 (17%)

Query: 206 HSQYLTKIPDLVETPNLERINLLNC--TNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRN 263
           +S+ LT +P  +   +  R+ L +    +LP           L+ LSL+           
Sbjct: 15  NSKGLTSVPTGI-PSSATRLELESNKLQSLP--HGVFDKLTQLTKLSLSSN--------G 63

Query: 264 IYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKR 323
           + F+   +       +L            L L    +  + S+   L  LE LD      
Sbjct: 64  LSFKGCCSQSDFGTTSLKY----------LDLSFNGVITMSSNFLGLEQLEHLDFQHS-N 112

Query: 324 LKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSI-EYLE 382
           LK++S                         +   + +L+ +D+  T  R   + I   L 
Sbjct: 113 LKQMSE----------------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150

Query: 383 GLRKLDLGDCSELASLPEK-LENLKSLKYLNAEFSAIGQLPSSI-SDLNQLKKLKFSGCR 440
            L  L +   S   +        L++L +L+     + QL  +  + L+ L+ L  S   
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210

Query: 441 GLVLPP-LLSGLSSLTELHLTDCNITEIPADI--GSLSSIVWLALSGNHF 487
              L       L+SL  L  +  +I            SS+ +L L+ N F
Sbjct: 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.7 bits (171), Expect = 5e-13
 Identities = 30/160 (18%), Positives = 53/160 (33%), Gaps = 17/160 (10%)

Query: 391 DCSE--LASLPEKLENLKSLKYLNAEFSAIGQLPSSI-SDLNQLKKLKFSGCR---GLVL 444
            C+   L S+P  +    S   L  E + +  LP  +   L QL KL  S          
Sbjct: 13  RCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70

Query: 445 PPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSV--KQLSQLRY 502
                G +SL  L L+   +  + ++   L  +  L    ++ +++        L  L Y
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 130

Query: 503 LHLSNCNMLQSLPE-----LPIYLVYLEAKNCKRLQTLPE 537
           L +S+    +         L   L  L+       +    
Sbjct: 131 LDISH-THTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLP 168

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 45/230 (19%), Positives = 77/230 (33%), Gaps = 39/230 (16%)

Query: 100 LNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHW 159
           L L   +   L   VF  ++ L  L             S     D G       L+YL  
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS---QSDFGTT----SLKYLDL 85

Query: 160 HQYSLKTLPLNFDP-ENLIELNLPYSNVEQIWEGKKQAF----KLKFIDLHHSQYLTKIP 214
               + T+  NF   E L  L+  +SN++Q+ E     F     L ++D+ H+       
Sbjct: 86  SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF--SVFLSLRNLIYLDISHTH-TRVAF 142

Query: 215 D--LVETPNLERINLLNCTNLPYISSSI-QNFNNLSVLSLAGCRSLVSFPRNIYFRSPIA 271
           +       +LE + +   +        I     NL+ L L+ C+ L              
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTA------- 194

Query: 272 VDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSI-ECLTNLETLDLSF 320
             F+   +L            L + +     + +   +CL +L+ LD S 
Sbjct: 195 --FNSLSSLQ----------VLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  112 bits (283), Expect = 2e-26
 Identities = 62/347 (17%), Positives = 138/347 (39%), Gaps = 24/347 (6%)

Query: 175 NLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLP 234
           NL  L L  + +  I +  K    L  ++L  +  ++ I  L    +L++++  N     
Sbjct: 113 NLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDL 170

Query: 235 YISSSIQNFNNLSVLSLAGCR--SLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSG--NI 290
                + N   L  L ++  +   +    +     S   +  ++   +++   +    N+
Sbjct: 171 ---KPLANLTTLERLDISSNKVSDISVLAKLTNLES---LIATNN-QISDITPLGILTNL 223

Query: 291 IELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLET 350
            EL L   +++++ + +  LTNL  LDL+  + +  ++  +  L  L  L+LG    +  
Sbjct: 224 DELSLNGNQLKDIGT-LASLTNLTDLDLANNQ-ISNLA-PLSGLTKLTELKLGAN-QISN 279

Query: 351 FPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKY 410
               L  +  L  ++L E  + ++   I  L+ L  L L     ++ +   + +L  L+ 
Sbjct: 280 ISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQR 335

Query: 411 LNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPAD 470
           L    + +  + S +++L  +  L     +   L PL + L+ +T+L L D   T  P +
Sbjct: 336 LFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTPL-ANLTRITQLGLNDQAWTNAPVN 393

Query: 471 IGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPEL 517
             +  SI     +       P ++          ++  N+     E+
Sbjct: 394 YKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITW-NLPSYTNEV 439

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  101 bits (255), Expect = 6e-23
 Identities = 47/247 (19%), Positives = 98/247 (39%), Gaps = 23/247 (9%)

Query: 289 NIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNL 348
             ++  L  T + +  S    L  + TL       +K +   +  L +L  +       L
Sbjct: 25  EKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLG-IKSID-GVEYLNNLTQINFSNN-QL 80

Query: 349 ETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSL 408
                 L+ +  L++I +    I ++   +  L  L  L L +  ++  +   L+NL +L
Sbjct: 81  TDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNN-QITDIDP-LKNLTNL 136

Query: 409 KYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIP 468
             L    + I  +  ++S L  L++L F      + P  L+ L++L  L ++   +++I 
Sbjct: 137 NRLELSSNTISDIS-ALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDIS 193

Query: 469 ADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKN 528
             +  L+++  L  + N    +   +  L+ L  L L+  N L+ +  L          +
Sbjct: 194 V-LAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNG-NQLKDIGTL---------AS 241

Query: 529 CKRLQTL 535
              L  L
Sbjct: 242 LTNLTDL 248

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 95.8 bits (239), Expect = 7e-21
 Identities = 47/252 (18%), Positives = 99/252 (39%), Gaps = 27/252 (10%)

Query: 284 PLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELG 343
           PL S  I      +T I ++  +   L       L     +     S   L  +  L+  
Sbjct: 2   PLGSATI----TQDTPINQI-FTDTALAEKMKTVLGKT-NVTDTV-SQTDLDQVTTLQAD 54

Query: 344 GCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLE 403
               +++   + E + +L +I+     + ++   ++ L  L  + + +  ++A +   L 
Sbjct: 55  RL-GIKSIDGV-EYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNN-QIADITP-LA 109

Query: 404 NLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCN 463
           NL +L  L    + I  +   + +L  L +L+ S    +     LSGL+SL +L      
Sbjct: 110 NLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSF-GNQ 166

Query: 464 ITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVY 523
           +T++   + +L+++  L +S N    +   + +L+ L  L  +N N +  +  L      
Sbjct: 167 VTDLKP-LANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATN-NQISDITPL------ 217

Query: 524 LEAKNCKRLQTL 535
                   L  L
Sbjct: 218 ---GILTNLDEL 226

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 92.7 bits (231), Expect = 7e-20
 Identities = 76/410 (18%), Positives = 142/410 (34%), Gaps = 58/410 (14%)

Query: 86  LKKNKGTDAIEGILLNLSKTRDIHLDGN------VFVNMSNLRFLKFYMPEYKGVPIMSS 139
           +  N+  D     L NL+    + L  N         N++NL  L+        +     
Sbjct: 97  MNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS---- 150

Query: 140 KVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKL 199
                  L  L   L+ L +        PL  +   L  L++  + V  I     +   L
Sbjct: 151 ------ALSGLTS-LQQLSFGNQVTDLKPLA-NLTTLERLDISSNKVSDI-SVLAKLTNL 201

Query: 200 KFIDLHHSQYLTKIPDLVETPNLERINLLNC--TNLPYISSSIQNFNNLSVLSLAGCRSL 257
           + +   ++Q ++ I  L    NL+ ++L      ++     ++ +  NL+ L LA  + +
Sbjct: 202 ESLIATNNQ-ISDITPLGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQ-I 255

Query: 258 VSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLD 317
            +               S    LTE          L+L   +I  +   +  LT L  L+
Sbjct: 256 SNLA-----------PLSGLTKLTE----------LKLGANQISNISP-LAGLTALTNLE 293

Query: 318 LSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSS 377
           L+  + L+ +S  I  LK+L +L L    N+      +  +  L  +      + ++ S 
Sbjct: 294 LNENQ-LEDIS-PISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNNKVSDVSS- 348

Query: 378 IEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFS 437
           +  L  +  L  G   +++ L   L NL  +  L     A    P +      +     +
Sbjct: 349 LANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKN 406

Query: 438 GCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHF 487
               L+ P  +S   S TE  +T    +       + S  V +      F
Sbjct: 407 VTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTF 456

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  113 bits (284), Expect = 3e-26
 Identities = 68/363 (18%), Positives = 131/363 (36%), Gaps = 46/363 (12%)

Query: 163 SLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAF-KLKFIDLHHSQYLTKIPD--LVET 219
            +     +    N   +    S + ++      +F +++ ++L+  Q + +I        
Sbjct: 40  DVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYA 98

Query: 220 PNLERINLLNCTNLPYISSSI-QNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCV 278
             ++++ +     + Y+   + QN   L+VL L     L S PR I         F +  
Sbjct: 99  HTIQKLYM-GFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGI---------FHNTP 147

Query: 279 NLTEFPLVSGNIIELRLWNTRIEEVPSSI-ECLTNLETLDLSFCKRLKRVSTSICKLKSL 337
            LT           L + N  +E +     +  T+L+ L LS   RL  V  S+  + SL
Sbjct: 148 KLTT----------LSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSL--IPSL 194

Query: 338 CWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELAS 397
               +     L T          + E+D    +I  +   +     L  L L     L  
Sbjct: 195 FHANVSYN-LLSTLA----IPIAVEELDASHNSINVVRGPV--NVELTILKLQHN-NLTD 246

Query: 398 LPEKLENLKSLKYLNAEFSAIGQLPSSI-SDLNQLKKLKFSGCRGLVLPPLLSGLSSLTE 456
               L N   L  ++  ++ + ++       + +L++L  S  R + L      + +L  
Sbjct: 247 TAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKV 305

Query: 457 LHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSN----CNMLQ 512
           L L+  ++  +  +      +  L L  N    L  S      L+ L LS+    CN L+
Sbjct: 306 LDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLST--HHTLKNLTLSHNDWDCNSLR 363

Query: 513 SLP 515
           +L 
Sbjct: 364 ALF 366

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  105 bits (264), Expect = 9e-24
 Identities = 50/335 (14%), Positives = 103/335 (30%), Gaps = 55/335 (16%)

Query: 222 LERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLT 281
              +++   T   Y        NN  +++      +   P  +               + 
Sbjct: 29  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAAL---------LDSFRQVE 78

Query: 282 EFPLVSGNIIELRLWNTRIEEVPSSI-ECLTNLETLDLSFCKRLKRVSTSI-CKLKSLCW 339
                      L L + +IEE+ +        ++ L + F   ++ +   +   +  L  
Sbjct: 79  ----------LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 127

Query: 340 LELGGCSNLETFP-EILEKMEHLLEIDLRETAIRNLPSSI-EYLEGLRKLDLGDCSELAS 397
           L L    +L + P  I      L  + +    +  +     +    L+ L L     L  
Sbjct: 128 LVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTH 185

Query: 398 LPEKLENLKSLKYLNAEFSAIGQLPSSIS----DL--NQLKKLKFSGCRGLVL------- 444
           +   L  + SL + N  ++ +  L   I+    D   N +  ++      L +       
Sbjct: 186 VD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN 243

Query: 445 ---PPLLSGLSSLTELHLTDCNITEIPADI-GSLSSIVWLALSGNHFERLPTSVKQLSQL 500
                 L     L E+ L+   + +I       +  +  L +S N    L    + +  L
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTL 303

Query: 501 RYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTL 535
           + L LS+ N L  +                RL+ L
Sbjct: 304 KVLDLSH-NHLLHVER--------NQPQFDRLENL 329

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 86.9 bits (215), Expect = 9e-18
 Identities = 57/457 (12%), Positives = 132/457 (28%), Gaps = 100/457 (21%)

Query: 100 LNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQ-GLRYLPEELRYLH 158
           +    +    L   +  +   +  L                 +L+   +  +        
Sbjct: 56  VTFKNSTMRKLPAALLDSFRQVELL-----------------NLNDLQIEEIDTY----- 93

Query: 159 WHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPD--L 216
               +            + +L +   N                        +  +P    
Sbjct: 94  ----AFAYAH------TIQKLYM-GFN-----------------------AIRYLPPHVF 119

Query: 217 VETPNLERINLLNC--TNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDF 274
              P L  + L     ++LP       N   L+ LS++    L     +          F
Sbjct: 120 QNVPLLTVLVLERNDLSSLP--RGIFHNTPKLTTLSMSNNN-LERIEDDT---------F 167

Query: 275 SDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKL 334
               +L            L+L + R+  V  S+  + +L   ++S+        +++   
Sbjct: 168 QATTSLQ----------NLQLSSNRLTHVDLSL--IPSLFHANVSYNL-----LSTLAIP 210

Query: 335 KSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSE 394
            ++  L+     ++            L  + L+   + +    +    GL ++DL    E
Sbjct: 211 IAVEELDASHN-SINVVRG--PVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYN-E 265

Query: 395 LASLPEK-LENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSS 453
           L  +       ++ L+ L    + +  L      +  LK L  S    L +         
Sbjct: 266 LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR 325

Query: 454 LTELHLTDCNITEIPADIGSLSSIVWLALSGNHFE--RLPTSVKQLSQLRYLHLSNCNML 511
           L  L+L   +I  +   + +  ++  L LS N ++   L    + +++           +
Sbjct: 326 LENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI 383

Query: 512 QSLPELPIYLVYLEAKNCKRLQTLPEIPSSVEELDAS 548
               E  +     +     RL     + S VE++  +
Sbjct: 384 DYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRA 420

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.1 bits (174), Expect = 6e-13
 Identities = 23/147 (15%), Positives = 62/147 (42%), Gaps = 5/147 (3%)

Query: 374 LPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSI-SDLNQLK 432
           + S+++Y      + +   ++      +   L + K +  + S + +LP+++     Q++
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 433 KLKFSGCRGLVLPP-LLSGLSSLTELHLTDCNITEIPADI-GSLSSIVWLALSGNHFERL 490
            L  +  +   +     +   ++ +L++    I  +P  +  ++  +  L L  N    L
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 138

Query: 491 PTSV-KQLSQLRYLHLSNCNMLQSLPE 516
           P  +     +L  L +SN N L+ + +
Sbjct: 139 PRGIFHNTPKLTTLSMSN-NNLERIED 164

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.7 bits (173), Expect = 8e-13
 Identities = 66/448 (14%), Positives = 136/448 (30%), Gaps = 84/448 (18%)

Query: 96  EGILLNLSKTRDIHLDGN--------VFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQ-G 146
                     + +++  N        VF N+  L  L                  L++  
Sbjct: 92  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL-----------------VLERND 134

Query: 147 LRYLPEE-------LRYLHWHQYSLKTLPLN-FDP-ENLIELNLPYSNVEQIWEGKKQAF 197
           L  LP         L  L     +L+ +  + F    +L  L L  + +  +        
Sbjct: 135 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLI 191

Query: 198 K-LKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRS 256
             L   ++ ++  L+ +        +E ++  +  ++  +   +     L++L L     
Sbjct: 192 PSLFHANVSYNL-LSTLAIP---IAVEELDASHN-SINVVRGPV--NVELTILKLQHNN- 243

Query: 257 LVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSI-ECLTNLET 315
           L                  +   L           E+ L    +E++       +  LE 
Sbjct: 244 LTDTA-----------WLLNYPGLV----------EVDLSYNELEKIMYHPFVKMQRLER 282

Query: 316 LDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLP 375
           L +S   RL  ++     + +L  L+L    +L        + + L  + L   +I  L 
Sbjct: 283 LYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIVTLK 340

Query: 376 SSIEYLEGLRKLDLGD----CSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQL 431
            S      L+ L L      C+ L +L   +    ++   +       QL   +      
Sbjct: 341 LST--HHTLKNLTLSHNDWDCNSLRALFRNVARP-AVDDADQHCKIDYQLEHGLCCKESD 397

Query: 432 KKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLP 491
           K       + + L  ++  +            I  + +    ++    + L GN  E+L 
Sbjct: 398 KPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGN--EQLE 455

Query: 492 TSVKQLS----QLRYLHLSNCNMLQSLP 515
             V +L     QL    +    +LQ L 
Sbjct: 456 AEVNELRAEVQQLTNEQIQQEQLLQGLH 483

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  108 bits (272), Expect = 4e-25
 Identities = 42/312 (13%), Positives = 100/312 (32%), Gaps = 38/312 (12%)

Query: 236 ISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRL 295
           I    QN N   +  +     L     ++              N+ E          L L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSS-LKQALASL---------RQSAWNVKE----------LDL 41

Query: 296 WNTRIEEV-PSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEI 354
               + ++  + +   T LE L+LS    L      +  L +L  L+L     ++     
Sbjct: 42  SGNPLSQISAADLAPFTKLELLNLSSN-VLYETL-DLESLSTLRTLDLNNN-YVQELLV- 97

Query: 355 LEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEK-LENLKSLKYLNA 413
                 +  +      I  +  S    +G + + L +   +  L +        ++YL+ 
Sbjct: 98  ---GPSIETLHAANNNISRVSCSR--GQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDL 151

Query: 414 EFSAIGQLPSS--ISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADI 471
           + + I  +  +   +  + L+ L         +   +   + L  L L+   +  +  + 
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEF 210

Query: 472 GSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQ--SLPELPIYLVYLEAKNC 529
            S + + W++L  N    +  +++    L +  L   N     +L +       ++    
Sbjct: 211 QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG-NGFHCGTLRDFFSKNQRVQTVAK 269

Query: 530 KRLQTLPEIPSS 541
           + ++ L      
Sbjct: 270 QTVKKLTGQNEE 281

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 94.9 bits (236), Expect = 1e-20
 Identities = 56/417 (13%), Positives = 108/417 (25%), Gaps = 71/417 (17%)

Query: 153 ELRYLHWHQYSLKTLPLNF--DPENLIELNLPYSNVEQIWEGKKQAF----KLKFIDLHH 206
             +       SLK    +      N+ EL+L  + + QI            KL+ ++L  
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI---SAADLAPFTKLELLNLSS 67

Query: 207 SQYLTKIPDLVETPNLERINL------------------LNCTNLPYISSSIQNFNNLSV 248
           +  L +  DL     L  ++L                      N+  +S S         
Sbjct: 68  NV-LYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR--GQGKKN 124

Query: 249 LSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTE---------------FPLVSGNIIEL 293
           + LA  + +               D      +                     S  +  L
Sbjct: 125 IYLANNK-ITMLRDL---------DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 294 RLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPE 353
            L    I +V   +     L+TLDLS   +L  +         + W+ L     L    +
Sbjct: 175 NLQYNFIYDVKGQV-VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEK 231

Query: 354 ILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEK-LENLKSLKYLN 412
            L   ++L   DLR            + +  R   +     +  L  +  E        +
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV-AKQTVKKLTGQNEEECTVPTLGH 290

Query: 413 AEFSAIGQLPSSISD------LNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITE 466
                   LP+  +D        +   L   G     L       +   E+         
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350

Query: 467 IPADIGS-LSSIVWLALSGNHFERLPT----SVKQLSQLRYLHLSNCNMLQSLPELP 518
           +   +     + + L       +   +    +  +L       +    +  +  E  
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQS 407

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 86.1 bits (213), Expect = 9e-18
 Identities = 53/377 (14%), Positives = 115/377 (30%), Gaps = 51/377 (13%)

Query: 189 IWEGKKQAFKLKFIDLHHSQYLTKIPD--LVETPNLERINLLNCTNLPYIS-SSIQNFNN 245
           I E K+   + K   +  S  L +          N++ ++L +   L  IS + +  F  
Sbjct: 2   IHEIKQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDL-SGNPLSQISAADLAPFTK 59

Query: 246 LSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPS 305
           L +L+L+    L               D      L            L L N  ++E+  
Sbjct: 60  LELLNLSSNV-LYETL-----------DLESLSTLRT----------LDLNNNYVQELLV 97

Query: 306 SIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPE-ILEKMEHLLEI 364
                 ++ETL  +    + RVS S    +    + L     +    +        +  +
Sbjct: 98  ----GPSIETLHAANN-NISRVSCSR--GQGKKNIYLANN-KITMLRDLDEGCRSRVQYL 149

Query: 365 DLRETAIRNLPSS--IEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLP 422
           DL+   I  +  +      + L  L+L     +  +  ++     LK L+   + +  + 
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQV-VFAKLKTLDLSSNKLAFMG 207

Query: 423 SSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLAL 482
                   +  +     + +++   L    +L    L                +     +
Sbjct: 208 PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

Query: 483 SGNHFERLPTSVKQ-LSQLRYLHLSNCNM----------LQSLPELPIYLVYLEAKNCKR 531
           +    ++L    ++  +     H                L +L      L+  +    +R
Sbjct: 268 AKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER 327

Query: 532 LQTLPEIPSSVEELDAS 548
           L+   E  +   E+DA 
Sbjct: 328 LECERENQARQREIDAL 344

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (268), Expect = 1e-24
 Identities = 70/330 (21%), Positives = 123/330 (37%), Gaps = 41/330 (12%)

Query: 199 LKFIDLHHSQYLTKIP--DLVETPNLERINLLNCTNLPYISSSI-QNFNNLSVLSLAGCR 255
            + +DL  ++ +  +   +    P+LE + L     +  +      N  NL  L L   R
Sbjct: 34  TRLLDLGKNR-IKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 256 SLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSI-ECLTNLE 314
            L   P  +         F+   NLT+          L +   +I  +   + + L NL+
Sbjct: 92  -LKLIPLGV---------FTGLSNLTK----------LDISENKIVILLDYMFQDLYNLK 131

Query: 315 TLDLSFCKRLKRVSTSI-CKLKSLCWLELGGCSNLETFP-EILEKMEHLLEIDLRETAIR 372
           +L++     L  +S      L SL  L L  C NL + P E L  +  L+ + LR   I 
Sbjct: 132 SLEVGDN-DLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNIN 189

Query: 373 NLPSSI-EYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPS-SISDLNQ 430
            +     + L  L+ L++     L ++        +L  L+     +  +P  ++  L  
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249

Query: 431 LKKLKFSGCRGLVLPP-LLSGLSSLTELHLTDCNITEIPADI-GSLSSIVWLALSGNHFE 488
           L+ L  S      +   +L  L  L E+ L    +  +       L+ +  L +SGN   
Sbjct: 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

Query: 489 RLPTSV-KQLSQLRYLHLS------NCNML 511
            L  SV   +  L  L L       +C +L
Sbjct: 310 TLEESVFHSVGNLETLILDSNPLACDCRLL 339

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  100 bits (250), Expect = 3e-22
 Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 13/237 (5%)

Query: 289 NIIELRLWNTRIEEVPSSI-ECLTNLETLDLSFCKRLKRVSTSICK-LKSLCWLELGGCS 346
           ++ EL L    +  V       L NL TL L    RLK +   +   L +L  L++    
Sbjct: 57  HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISEN- 114

Query: 347 NLETFPE-ILEKMEHLLEIDLRETAIRNLPSSI-EYLEGLRKLDLGDCSELASLPEK-LE 403
            +    + + + + +L  +++ +  +  +       L  L +L L  C+ L S+P + L 
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALS 173

Query: 404 NLKSLKYLNAEFSAIGQLPSSI-SDLNQLKKLKFSGCRGL-VLPPLLSGLSSLTELHLTD 461
           +L  L  L      I  +       L +LK L+ S    L  + P      +LT L +T 
Sbjct: 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233

Query: 462 CNITEIPAD-IGSLSSIVWLALSGNHFERLPTSV-KQLSQLRYLHLSNCNMLQSLPE 516
           CN+T +P   +  L  + +L LS N    +  S+  +L +L+ + L     L  +  
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG-GQLAVVEP 289

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 98.3 bits (245), Expect = 1e-21
 Identities = 61/340 (17%), Positives = 134/340 (39%), Gaps = 44/340 (12%)

Query: 163 SLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAF----KLKFIDLHHSQYLTKIPD--L 216
               +P    P     L+L  + ++ +    +  F     L+ ++L+ +  ++ +     
Sbjct: 22  RFVAVPEGI-PTETRLLDLGKNRIKTL---NQDEFASFPHLEELELNENI-VSAVEPGAF 76

Query: 217 VETPNLERINLLNCTNLPYISSSI-QNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFS 275
               NL  + L +   L  I   +    +NL+ L ++  + +V     +         F 
Sbjct: 77  NNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENK-IVILLDYM---------FQ 125

Query: 276 DCVNLTEFPLVSGNIIELRLWNTRIEEVPSSI-ECLTNLETLDLSFCKRLKRVST-SICK 333
           D  NL            L + +  +  +       L +LE L L  C  L  + T ++  
Sbjct: 126 DLYNLKS----------LEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSH 174

Query: 334 LKSLCWLELGGCSNLETFPE-ILEKMEHLLEIDLRET-AIRNLPSSIEYLEGLRKLDLGD 391
           L  L  L L    N+    +   +++  L  +++     +  +  +  Y   L  L +  
Sbjct: 175 LHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233

Query: 392 CSELASLPEK-LENLKSLKYLNAEFSAIGQLPSSI-SDLNQLKKLKFSGCRGLVLPP-LL 448
           C  L ++P   + +L  L++LN  ++ I  +  S+  +L +L++++  G +  V+ P   
Sbjct: 234 C-NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292

Query: 449 SGLSSLTELHLTDCNITEIPADI-GSLSSIVWLALSGNHF 487
            GL+ L  L+++   +T +   +  S+ ++  L L  N  
Sbjct: 293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 94.4 bits (235), Expect = 2e-20
 Identities = 65/318 (20%), Positives = 116/318 (36%), Gaps = 47/318 (14%)

Query: 150 LPEELRYLHWHQYSLKTLPLN-FDP-ENLIELNLPYSNVEQIWEGKKQAFK----LKFID 203
           +P E R L   +  +KTL  + F    +L EL L  + V  +  G   AF     L+ + 
Sbjct: 30  IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG---AFNNLFNLRTLG 86

Query: 204 LHHSQYLTKIPD--LVETPNLERINLLNCTNLPYISSSI-QNFNNLSVLSLAGCRSLVSF 260
           L  ++ L  IP        NL ++++     +  +   + Q+  NL  L +     LV  
Sbjct: 87  LRSNR-LKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDND-LVYI 143

Query: 261 PRNIYFRSPIAVDFSDCVNLTEFPLVSGNII---------------ELRLWNTRIEEVPS 305
                        FS   +L +  L     +                LRL +  I  +  
Sbjct: 144 SHRA---------FSGLNSLEQLTL-EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193

Query: 306 SI-ECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPE-ILEKMEHLLE 363
              + L  L+ L++S    L  ++ +     +L  L +  C NL   P   +  + +L  
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRF 252

Query: 364 IDLRETAIRNLPSSI-EYLEGLRKLDLGDCSELASLPEK-LENLKSLKYLNAEFSAIGQL 421
           ++L    I  +  S+   L  L+++ L     LA +       L  L+ LN   + +  L
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLTTL 311

Query: 422 PSSI-SDLNQLKKLKFSG 438
             S+   +  L+ L    
Sbjct: 312 EESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 93.6 bits (233), Expect = 4e-20
 Identities = 54/236 (22%), Positives = 86/236 (36%), Gaps = 33/236 (13%)

Query: 287 SGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCS 346
           S     +     R   VP  I   T    LDL    R+K ++                  
Sbjct: 10  SAQDRAVLCHRKRFVAVPEGI--PTETRLLDLGKN-RIKTLN------------------ 48

Query: 347 NLETFPEILEKMEHLLEIDLRETAIRNLPSSI-EYLEGLRKLDLGDCSELASLPEK-LEN 404
                 +      HL E++L E  +  +       L  LR L L     L  +P      
Sbjct: 49  -----QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTG 102

Query: 405 LKSLKYLNAEFSAIGQLPSSI-SDLNQLKKLKFSGCRGLVLPP-LLSGLSSLTELHLTDC 462
           L +L  L+   + I  L   +  DL  LK L+      + +     SGL+SL +L L  C
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162

Query: 463 NITEIPADI-GSLSSIVWLALSGNHFERLPTSV-KQLSQLRYLHLSNCNMLQSLPE 516
           N+T IP +    L  ++ L L   +   +     K+L +L+ L +S+   L ++  
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.9 bits (135), Expect = 4e-08
 Identities = 55/322 (17%), Positives = 92/322 (28%), Gaps = 91/322 (28%)

Query: 96  EGILLNLSKTRDIHLDGN--------VFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQ-G 146
            G   NL   R + L  N        VF  +SNL  L                  + +  
Sbjct: 73  PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL-----------------DISENK 115

Query: 147 LRYLPEE-------LRYLHWHQYSLKTLPLN-FDP-ENLIELNLPYSNVEQIWEGKKQAF 197
           +  L +        L+ L      L  +    F    +L +L L   N+  I     +A 
Sbjct: 116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI---PTEAL 172

Query: 198 ----KLKFIDLHHSQYLTKIPD--LVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSL 251
                L  + L H   +  I D        L+ + + +   L  ++ +     NL+ LS+
Sbjct: 173 SHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231

Query: 252 AGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSI-ECL 310
             C  L + P                V L            L L    I  +  S+   L
Sbjct: 232 THCN-LTAVPYLA---------VRHLVYLR----------FLNLSYNPISTIEGSMLHEL 271

Query: 311 TNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETA 370
             L+ + L   + L  V                        P     + +L  +++    
Sbjct: 272 LRLQEIQLVGGQ-LAVVE-----------------------PYAFRGLNYLRVLNVSGNQ 307

Query: 371 IRNLPSSI-EYLEGLRKLDLGD 391
           +  L  S+   +  L  L L  
Sbjct: 308 LTTLEESVFHSVGNLETLILDS 329

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  107 bits (268), Expect = 6e-24
 Identities = 86/483 (17%), Positives = 170/483 (35%), Gaps = 60/483 (12%)

Query: 100 LNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHW 159
           L+L  ++   L  + F  + +L  L+ Y        +           R L   L  L  
Sbjct: 78  LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG------YFRNLK-ALTRLDL 130

Query: 160 HQYSLKTLPLN--FDP-ENLIELNLPYSNVEQIWEGKKQAFK------LKFIDLHHSQYL 210
            +  +++L L+  F    +L  ++   + +  +    +   +      L F  L  +  L
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV---CEHELEPLQGKTLSFFSLAANS-L 186

Query: 211 TKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPI 270
                +     +     +    L  +S      N  +V       + +S  +        
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEIL-DVSG-----NGWTVDITGNFSNAISKSQAFSLILAH 240

Query: 271 AVDFSDC--VNLTEFP------LVSGNIIELRLWNTRIEEVPSSI-ECLTNLETLDLSFC 321
            +  +     N+ +        L   ++  L L +  +  + S + E L +L+ L+L++ 
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300

Query: 322 KRLKRVSTSI-CKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSI-E 379
           K + +++      L +L  L L      E +      +  +  IDL++  I  +     +
Sbjct: 301 K-INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359

Query: 380 YLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGC 439
           +LE L+ LDL D   L ++      + S+  +    + +  LP      N +  L  +  
Sbjct: 360 FLEKLQTLDLRDN-ALTTIH----FIPSIPDIFLSGNKLVTLPKINLTANLI-HLSENRL 413

Query: 440 RGLVLPPLLSGLSSLTELHLTDCNITEIPAD--IGSLSSIVWLALSGNHFERLPTSV--- 494
             L +   L  +  L  L L     +    D       S+  L L  N  +    +    
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473

Query: 495 ---KQLSQLRYLHLSNCNMLQSLPELPIY----LVYLEAKNCKRLQTLPE--IPSSVEEL 545
              + LS L+ L+L++   L SLP         L  L   +  RL  L    +P+++E L
Sbjct: 474 DVFEGLSHLQVLYLNHNY-LNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEIL 531

Query: 546 DAS 548
           D S
Sbjct: 532 DIS 534

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  105 bits (263), Expect = 2e-23
 Identities = 70/466 (15%), Positives = 151/466 (32%), Gaps = 73/466 (15%)

Query: 100 LNLSKTR--DIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYL 157
           L L      D  L    F N+  L  L     + + + +  S   L+         L+ +
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS--------LKSI 153

Query: 158 HWHQYSLKTLP----LNFDPENLIELNLPYSNVEQI----WEGKKQAFK---LKFIDLHH 206
            +    +  +          + L   +L  +++       W      F+   L+ +D+  
Sbjct: 154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG 213

Query: 207 SQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYF 266
           + +   I        + +    +     +I  +   F+N+            +    +  
Sbjct: 214 NGWTVDITGNFSN-AISKSQAFSLILAHHIMGAGFGFHNIKDPD-------QNTFAGLAR 265

Query: 267 RSPIAVDFSDCVNLTEFPLVS----GNIIELRLWNTRIEEVPSSI-ECLTNLETLDLSFC 321
            S   +D S    +            ++  L L   +I ++       L NL+ L+LS+ 
Sbjct: 266 SSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 322 KRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYL 381
              +  S++   L  + +++L          +  + +E L  +DLR     N  ++I ++
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR----DNALTTIHFI 380

Query: 382 EGLRKLDLGDCSELASLPEK----------------------LENLKSLKYLNAEFSAIG 419
             +  + L     L +LP+                       L  +  L+ L    +   
Sbjct: 381 PSIPDIFLSGNK-LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439

Query: 420 QLPSS--ISDLNQLKKLKFSGCR------GLVLPPLLSGLSSLTELHLTDCNITEIPADI 471
                   S+   L++L              +   +  GLS L  L+L    +  +P  +
Sbjct: 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV 499

Query: 472 -GSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPE 516
              L+++  L+L+ N    L  +    + L  L +S  N L +   
Sbjct: 500 FSHLTALRGLSLNSNRLTVLSHND-LPANLEILDISR-NQLLAPNP 543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 88.7 bits (220), Expect = 3e-18
 Identities = 75/442 (16%), Positives = 149/442 (33%), Gaps = 52/442 (11%)

Query: 100 LNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQG-LRYLPEELRYLH 158
           L LS      +  + F  +  L+ L+             + + +D+   R LP  LR L 
Sbjct: 29  LLLSFNYIRTVTASSFPFLEQLQLLELGSQ--------YTPLTIDKEAFRNLP-NLRILD 79

Query: 159 WHQYSLKTLPLN-FDP-ENLIELNLPYSNVEQIWEGKKQAFK----LKFIDLHHSQYLTK 212
                +  L  + F    +L EL L +  +      K   F+    L  +DL  +Q +  
Sbjct: 80  LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA-VLKDGYFRNLKALTRLDLSKNQ-IRS 137

Query: 213 IPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAV 272
           +        L  +  ++ ++             L   +L    S  S   N    S ++V
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL----SFFSLAAN-SLYSRVSV 192

Query: 273 DFSDCVNLTEFPL-----VSGNIIELRLWNTRIEEVPS----SIECLTNLETLDLSFCKR 323
           D+  C+N     +     VSGN   + +       +      S+    ++      F   
Sbjct: 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF-HN 251

Query: 324 LKRVSTSI---CKLKSLCWLELGGCSNLETF-PEILEKMEHLLEIDLRETAIRNLPSSI- 378
           +K    +        S+  L+L     + +    + E ++ L  ++L    I  +     
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310

Query: 379 EYLEGLRKLDLGDCSELASLPEK-LENLKSLKYLNAEFSAIGQLPSSI-SDLNQLKKLKF 436
             L+ L+ L+L     L  L       L  + Y++ + + I  +       L +L+ L  
Sbjct: 311 YGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369

Query: 437 SGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSV-- 494
                      +  + S+ ++ L+   +  +P    + +    + LS N  E L      
Sbjct: 370 RDNA----LTTIHFIPSIPDIFLSGNKLVTLPKINLTANL---IHLSENRLENLDILYFL 422

Query: 495 KQLSQLRYLHLSNCNMLQSLPE 516
            ++  L+ L L+  N   S   
Sbjct: 423 LRVPHLQILILNQ-NRFSSCSG 443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 70.2 bits (172), Expect = 2e-12
 Identities = 48/236 (20%), Positives = 80/236 (33%), Gaps = 40/236 (16%)

Query: 297 NTRIEEVPSSIECLTNLETLDLSFCKRLKRV-STSICKLKSLCWLELGG-CSNLETFPEI 354
              + +VP     L   E L LSF   ++ V ++S   L+ L  LELG   + L    E 
Sbjct: 13  FCNLTQVPQV---LNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA 68

Query: 355 LEKMEHLLEIDLRETAIRNLPSSI-EYLEGLRKLDLGDC--SELASLPEKLENLKSLKYL 411
              + +L  +DL  + I  L     + L  L +L L  C  S+         NLK+L  L
Sbjct: 69  FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128

Query: 412 NAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADI 471
           +                NQ++ L         L P    L+SL  +  +   I  +    
Sbjct: 129 DLSK-------------NQIRSLY--------LHPSFGKLNSLKSIDFSSNQIFLVCEHE 167

Query: 472 ---GSLSSIVWLALSGNHFERLP-------TSVKQLSQLRYLHLSNCNMLQSLPEL 517
                  ++ + +L+ N              +  +   L  L +S       +   
Sbjct: 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN 223

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.0 bits (117), Expect = 5e-06
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 439 CRGLVLPPLLSGLSSLTELHLTDCNITEIPA-DIGSLSSIVWLALSGNHFERL--PTSVK 495
            R   L  +   L++   L L+   I  + A     L  +  L L   +        + +
Sbjct: 11  YRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR 70

Query: 496 QLSQLRYLHLSNCNMLQSLPE 516
            L  LR L L + + +  L  
Sbjct: 71  NLPNLRILDLGS-SKIYFLHP 90

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  105 bits (264), Expect = 7e-24
 Identities = 68/455 (14%), Positives = 148/455 (32%), Gaps = 60/455 (13%)

Query: 100 LNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQ----------GLRY 149
           L+LS      L  + F  +S+L++L      Y+ + + S   +L                
Sbjct: 79  LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138

Query: 150 LPEE-------LRYLHWHQYSLKTLPLN-FDP-ENLIELNLPYSNVEQIWEGKKQAF-KL 199
           +          L  L     SL+           ++  L L  S    + E        +
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198

Query: 200 KFIDLHHSQYLTKIP--DLVETPNLERINLLNCTNL-------PYISSSIQNFNNLSVLS 250
           ++++L  +  L +     L        +  L              +   ++    LS + 
Sbjct: 199 RYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

Query: 251 LAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECL 310
              C           F    +   S+   +    +   +I +  L+        +    L
Sbjct: 258 FDDCTLN----GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL----STVYSLL 309

Query: 311 TNLETLDLSFCKRLKRVSTSICK-LKSLCWLELGGC---SNLETFPEILEKMEHLLEIDL 366
             ++ + +   K +  V  S  + LKSL +L+L                     L  + L
Sbjct: 310 EKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368

Query: 367 RETAIRNLPSSIEYLEGLRKL---DLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPS 423
            +  +R++  + E L  L+ L   D+   +    +P+  +  + +++LN   + I  + +
Sbjct: 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRVVKT 427

Query: 424 SISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALS 483
            I     L+ L  S             L  L EL+++   +  +P        ++ + +S
Sbjct: 428 CI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPDA-SLFPVLLVMKIS 481

Query: 484 GNHFERLPTSV-KQLSQLRYLHLSN------CNML 511
            N  + +P  +  +L+ L+ + L        C  +
Sbjct: 482 RNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  105 bits (264), Expect = 7e-24
 Identities = 74/483 (15%), Positives = 163/483 (33%), Gaps = 70/483 (14%)

Query: 100 LNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEE------ 153
           L+LS  +  ++        +NL+ L                      +  +  +      
Sbjct: 31  LDLSFNKITYIGHGDLRACANLQVLILK----------------SSRINTIEGDAFYSLG 74

Query: 154 -LRYLHWHQYSLKTLPLN-FDP-ENLIELNLPYSNVEQIWEGK--KQAFKLKFIDLHHSQ 208
            L +L      L +L  + F P  +L  LNL  +  + +           L+ + + + +
Sbjct: 75  SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134

Query: 209 YLTKIP--DLVETPNLERINLLNCTNLPYISS-SIQNFNNLSVLSLAGCRSLVSFPRNIY 265
             ++I   D     +L  + +    +L    S S+++  ++  L+L              
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDIHHLTLHLSE---------- 183

Query: 266 FRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTN--LETLDLSFCK- 322
               + +      ++    L   N+   +     ++EV S ++ L        D SF + 
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 323 --------RLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNL 374
                    L  V    C L  L          +    ++  +   +  + + +  +   
Sbjct: 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV--ETVTIRRLHIPQFYLFYD 301

Query: 375 PSSI-EYLEGLRKLDLGDCSELASLPEK-LENLKSLKYLNAEFSAIGQL----PSSISDL 428
            S++   LE ++++ + +   +  +P    ++LKSL++L+   + + +      +     
Sbjct: 302 LSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

Query: 429 NQLKKLKFSGCRGLVLPP---LLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGN 485
             L+ L  S      +     +L  L +LT L ++      +P        + +L LS  
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST 420

Query: 486 HFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEI--PSSVE 543
               + T +     L  L +SN N L S       L  L      +L+TLP+      + 
Sbjct: 421 GIRVVKTCI--PQTLEVLDVSN-NNLDSFSLFLPRLQELYISRN-KLKTLPDASLFPVLL 476

Query: 544 ELD 546
            + 
Sbjct: 477 VMK 479

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.5 bits (199), Expect = 6e-16
 Identities = 46/221 (20%), Positives = 85/221 (38%), Gaps = 33/221 (14%)

Query: 297 NTRIEEVPSSIECLTNLETLDLSFCKRLKRV-STSICKLKSLCWLELGGCSNLETFP-EI 354
           +     +PS +     +++LDLSF K +  +    +    +L  L L     + T   + 
Sbjct: 14  SRSFTSIPSGL--TAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSS-RINTIEGDA 69

Query: 355 LEKMEHLLEIDLRETAIRNLPSS-IEYLEGLRKLDLGDCSELASLPEK--LENLKSLKYL 411
              +  L  +DL +  + +L SS    L  L+ L+L       +L       NL +L+ L
Sbjct: 70  FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTL 128

Query: 412 NAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPA-D 470
                        I ++    +++             +GL+SL EL +   ++    +  
Sbjct: 129 R------------IGNVETFSEIR---------RIDFAGLTSLNELEIKALSLRNYQSQS 167

Query: 471 IGSLSSIVWLALSGNHFERLPTSV-KQLSQLRYLHLSNCNM 510
           + S+  I  L L  +    L       LS +RYL L + N+
Sbjct: 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 451 LSSLTELHLTDCNITEIPA-DIGSLSSIVWLALSGNHFERLPTSV-KQLSQLRYLHLSNC 508
            +++  L L+   IT I   D+ + +++  L L  +    +       L  L +L LS+ 
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD- 83

Query: 509 NMLQSLPELPIYLVYLEAKNCKRLQTL 535
           N L SL                 L+ L
Sbjct: 84  NHLSSLSSSWF-------GPLSSLKYL 103

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 10/66 (15%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 452 SSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSV-KQLSQLRYLHLSNCNM 510
            +         + T IP+ +   +++  L LS N    +     +  + L+ L L + + 
Sbjct: 5   DASGVCDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS-SR 61

Query: 511 LQSLPE 516
           + ++  
Sbjct: 62  INTIEG 67

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  106 bits (267), Expect = 8e-24
 Identities = 105/568 (18%), Positives = 184/568 (32%), Gaps = 118/568 (20%)

Query: 99  LLNLSKTRDIHLDGNVFV----------NMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLR 148
               +    + L  N             + S L+FL            +S  + L+  L 
Sbjct: 96  FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS-LE 154

Query: 149 YL-----------PEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAF 197
            L                        LK L ++    N I  ++  S             
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCG-ELKHLAISG---NKISGDVDVSRCV---------- 200

Query: 198 KLKFIDLHHSQYLTKIPDLVETPNLERINL-------------LNCTNLPYI-------S 237
            L+F+D+  + + T IP L +   L+ +++               CT L  +        
Sbjct: 201 NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260

Query: 238 SSI--QNFNNLSVLSLAGCRSLVSFPRNI---------------YFRSPIAVDFSDCVNL 280
             I      +L  LSLA  +     P  +               +F   +   F  C  L
Sbjct: 261 GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320

Query: 281 TEFPLVSGN----------------IIELRLWNTRIE-EVPSSI-ECLTNLETLDLSFCK 322
               L S N                +  L L       E+P S+     +L TLDLS   
Sbjct: 321 ESLAL-SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379

Query: 323 RLKRVSTSICK--LKSLCWLELGGCSNLE-TFPEILEKMEHLLEIDLRETAIR-NLPSSI 378
               +  ++C+    +L  L L          P  L     L+ + L    +   +PSS+
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438

Query: 379 EYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNA---EFSAIGQLPSSISDLNQLKKL- 434
             L  LR L L        +P++L  +K+L+ L     + +  G++PS +S+   L  + 
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT--GEIPSGLSNCTNLNWIS 496

Query: 435 ----KFSGCRGLVLPPLLSGLSSLTELHLTDCNIT-EIPADIGSLSSIVWLALSGNHFE- 488
               + +G     +P  +  L +L  L L++ + +  IPA++G   S++WL L+ N F  
Sbjct: 497 LSNNRLTG----EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552

Query: 489 RLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEIPSSVEELDAS 548
            +P ++ + S     +         +    +      A N    Q        +  L  S
Sbjct: 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG--IRSEQLNRL--S 608

Query: 549 MLESIYEHSSGIMDGILFFDFTNCLKLN 576
                   +S +  G     F N   + 
Sbjct: 609 TRNPCNI-TSRVYGGHTSPTFDNNGSMM 635

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  106 bits (266), Expect = 1e-23
 Identities = 70/380 (18%), Positives = 130/380 (34%), Gaps = 80/380 (21%)

Query: 198 KLKFIDLHHSQYLTKIPDLVETPNLERINLLNCT---NLPYISSSIQNFNNLSVLSLAGC 254
            L+ + L +S     +     + +L  ++L   +    +    +S+ + + L  L+++  
Sbjct: 78  GLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVT-TLTSLGSCSGLKFLNVSSN 136

Query: 255 RSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIE-EVPSSIEC---L 310
                    + F   +    S  + L        ++  L L    I              
Sbjct: 137 --------TLDFPGKV----SGGLKLN-------SLEVLDLSANSISGANVVGWVLSDGC 177

Query: 311 TNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLE-TFPEILEKMEHLLEIDLRET 369
             L+ L +S  K +      + +  +L +L++    N     P +               
Sbjct: 178 GELKHLAISGNK-I-SGDVDVSRCVNLEFLDVSSN-NFSTGIPFLG-------------- 220

Query: 370 AIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAI-GQLPSSISDL 428
              +  +       L+ LD+            +     LK LN   +   G +P     L
Sbjct: 221 ---DCSA-------LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--L 268

Query: 429 NQLKKL-----KFSGCRGLVLPPLLSG-LSSLTELHLTDCNIT-EIPADIGSLSSIVWLA 481
             L+ L     KF+G     +P  LSG   +LT L L+  +    +P   GS S +  LA
Sbjct: 269 KSLQYLSLAENKFTG----EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324

Query: 482 LSGNHFE-RLPTSV-KQLSQLRYLHLSNCNMLQ-----SLPELPIYLVYLEAKNCKRLQT 534
           LS N+F   LP     ++  L+ L LS  N        SL  L   L+ L+  +      
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSF-NEFSGELPESLTNLSASLLTLDLSSNN-FSG 382

Query: 535 LPEIPSSVEELDASMLESIY 554
              I  ++ +   + L+ +Y
Sbjct: 383 --PILPNLCQNPKNTLQELY 400

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.1 bits (240), Expect = 1e-20
 Identities = 65/325 (20%), Positives = 113/325 (34%), Gaps = 61/325 (18%)

Query: 236 ISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRL 295
           I  ++ N + L  L L+          N Y    I         L +          L+L
Sbjct: 410 IPPTLSNCSELVSLHLSF---------N-YLSGTIPSSLGSLSKLRD----------LKL 449

Query: 296 WNTRIE-EVPSSIECLTNLETLDLSFCKRLK-RVSTSICKLKSLCWLELGGCSNLE-TFP 352
           W   +E E+P  +  +  LETL L F   L   + + +    +L W+ L     L    P
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFND-LTGEIPSGLSNCTNLNWISLSNN-RLTGEIP 507

Query: 353 EILEKMEHLLEIDLRETAIR-NLPSSIEYLEGLRKLDL-------------GDCSELAS- 397
           + + ++E+L  + L   +   N+P+ +     L  LDL                S   + 
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567

Query: 398 ------LPEKLENLKSLKYLNAEFSAI---GQLPSSISDLNQLKKLKFSGCR--GLVLPP 446
                     ++N    K  +   + +   G     ++ L+       +     G    P
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH-TSP 626

Query: 447 LLSGLSSLTELHLTDCNIT-EIPADIGSLSSIVWLALSGNHFE-RLPTSVKQLSQLRYLH 504
                 S+  L ++   ++  IP +IGS+  +  L L  N     +P  V  L  L  L 
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686

Query: 505 LSNCNML-----QSLPELPIYLVYL 524
           LS+ N L     Q++  L   L  +
Sbjct: 687 LSS-NKLDGRIPQAMSALT-MLTEI 709

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.5 bits (202), Expect = 5e-16
 Identities = 64/360 (17%), Positives = 107/360 (29%), Gaps = 70/360 (19%)

Query: 192 GKKQAFKLKFIDLHHSQYLT-KIPD-LVETPNLERINLLNCTNLP-YISSSIQNFNNLSV 248
            +     L+ + L ++   T KIP  L     L  ++L     L   I SS+ + + L  
Sbjct: 389 CQNPKNTLQELYLQNNG-FTGKIPPTLSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRD 446

Query: 249 LSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPL----VSGNI----------IELR 294
           L L                  I  +      L    L    ++G I            + 
Sbjct: 447 LKLWLNM----------LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496

Query: 295 LWNTRIE-EVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWL------------- 340
           L N R+  E+P  I  L NL  L LS       +   +   +SL WL             
Sbjct: 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556

Query: 341 ELGGCSNLE-------TFPEILEKMEHLLEIDLRETAIR---NLPSSIEYLEGLRKLDLG 390
            +   S               ++      E       +         +  L      ++ 
Sbjct: 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616

Query: 391 DCSELASLPEKLENLKSLKYLNAEFSA---IGQLPSSISDLNQLKKL-----KFSGCRGL 442
                       +N  S+ +L+   S     G +P  I  +  L  L       SG    
Sbjct: 617 SRVYGGHTSPTFDNNGSMMFLD--MSYNMLSGYIPKEIGSMPYLFILNLGHNDISG---- 670

Query: 443 VLPPLLSGLSSLTELHLTDCNIT-EIPADIGSLSSIVWLALSGNHFE-RLPTSVKQLSQL 500
            +P  +  L  L  L L+   +   IP  + +L+ +  + LS N+    +P    Q    
Sbjct: 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETF 729

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.1 bits (136), Expect = 4e-08
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 10/95 (10%)

Query: 444 LPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFE-RLPT--SVKQLSQL 500
           +   L  L+ L  L L++ +I    +     +S+  L LS N     + T  S+   S L
Sbjct: 69  VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128

Query: 501 RYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTL 535
           ++L++S+  +      +   L          L+ L
Sbjct: 129 KFLNVSSNTLDFPGK-VSGGL------KLNSLEVL 156

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  102 bits (256), Expect = 4e-23
 Identities = 72/248 (29%), Positives = 114/248 (45%), Gaps = 18/248 (7%)

Query: 279 NLTEFPL-VSGNIIELRLWNTRIEEVPSSI-ECLTNLETLDLSFCKRLKRVSTSI-CKLK 335
            L+E P  +  N   L L    I+ + +     L +LE L L     ++++       L 
Sbjct: 65  GLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLA 123

Query: 336 SLCWLELGGCSNLETFP-EILEKMEHLLEIDLRETAIRNLPSSI-EYLEGLRKLDLGDCS 393
           SL  LEL     L   P    E +  L E+ LR   I ++PS     +  L +LDLG+  
Sbjct: 124 SLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK 182

Query: 394 ELASLPEK-LENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPP-LLSGL 451
           +L  + E   E L +LKYLN     I  +P+ ++ L  L++L+ SG     + P    GL
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGL 241

Query: 452 SSLTELHLTDCNITEIPAD-IGSLSSIVWLALSGNHFERLPTSV-KQLSQLRYLHLSN-- 507
           SSL +L + +  ++ I  +    L+S+V L L+ N+   LP  +   L  L  LHL +  
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301

Query: 508 ----CNML 511
               C++L
Sbjct: 302 WNCDCDIL 309

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.0 bits (226), Expect = 2e-19
 Identities = 60/262 (22%), Positives = 101/262 (38%), Gaps = 42/262 (16%)

Query: 287 SGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSI-CKLKSLCWLELGGC 345
           S    ++      + EVP  I   +N   L+L     ++ +       L  L  L+LG  
Sbjct: 53  SNQFSKVVCTRRGLSEVPQGI--PSNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRN 109

Query: 346 --SNLETFPEILEKMEHLLEIDLRETAIRNLPSSI-EYLEGLRKLDLGDCSELASLPEK- 401
               +E        +  L  ++L +  +  +PS   EYL  LR+L L +   + S+P   
Sbjct: 110 SIRQIE--VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYA 166

Query: 402 LENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTD 461
              + SL  L+            + +L +L+ +               GL +L  L+L  
Sbjct: 167 FNRVPSLMRLD------------LGELKKLEYIS---------EGAFEGLFNLKYLNLGM 205

Query: 462 CNITEIPADIGSLSSIVWLALSGNHFERLPTSV-KQLSQLRYLHLSNCNMLQSLPE---- 516
           CNI ++P     L  +  L +SGNHF  +       LS L+ L + N + +  +      
Sbjct: 206 CNIKDMPNLTP-LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN-SQVSLIERNAFD 263

Query: 517 -LPIYLVYLEAKNCKRLQTLPE 537
            L   LV L   +   L +LP 
Sbjct: 264 GLA-SLVELNLAHN-NLSSLPH 283

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.5 bits (134), Expect = 4e-08
 Identities = 54/279 (19%), Positives = 96/279 (34%), Gaps = 71/279 (25%)

Query: 100 LNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQ-GLRYLPEELRYLH 158
           LNL +     +  + F ++ +L  L                  L +  +R +        
Sbjct: 80  LNLMENNIQMIQADTFRHLHHLEVL-----------------QLGRNSIRQIEVG----- 117

Query: 159 WHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAF----KLKFIDLHHSQYLTKIP 214
               +   L       +L  L L + N   +      AF    KL+ + L ++  +  IP
Sbjct: 118 ----AFNGLA------SLNTLEL-FDN--WLTVIPSGAFEYLSKLRELWLRNNP-IESIP 163

Query: 215 D--LVETPNLERINLLNCTNLPYISSSI-QNFNNLSVLSLAGCRSLVSFPRNIYFRSPIA 271
                  P+L R++L     L YIS    +   NL  L+L  C  +   P          
Sbjct: 164 SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP---------- 212

Query: 272 VDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPS-SIECLTNLETLDLSFCKRLKRVS-T 329
            + +  V L           EL +      E+   S   L++L+ L +    ++  +   
Sbjct: 213 -NLTPLVGLE----------ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERN 260

Query: 330 SICKLKSLCWLELGGCSNLETFPE-ILEKMEHLLEIDLR 367
           +   L SL  L L    NL + P  +   + +L+E+ L 
Sbjct: 261 AFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLH 298

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  101 bits (252), Expect = 2e-22
 Identities = 44/261 (16%), Positives = 84/261 (32%), Gaps = 25/261 (9%)

Query: 289 NIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNL 348
              EL+L    +  +P ++     +  L+++    L  +      L+ L   +      L
Sbjct: 60  QFSELQLNRLNLSSLPDNL--PPQITVLEITQN-ALISLPELPASLEYLDACDN----RL 112

Query: 349 ETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSL 408
            T PE+   ++HL   D+    +  LP        L  ++  +  +L  LPE   +L+ L
Sbjct: 113 STLPELPASLKHL---DVDNNQLTMLPELPA---LLEYINADNN-QLTMLPELPTSLEVL 165

Query: 409 KYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTE----LHLTDCNI 464
              +   + +  LP        L+ L  S      LP +        E        +  I
Sbjct: 166 ---SVRNNQLTFLPELPE---SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI 219

Query: 465 TEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYL 524
           T IP +I SL     + L  N               +        +  S+ +     ++ 
Sbjct: 220 THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD-YHGPRIYFSMSDGQQNTLHR 278

Query: 525 EAKNCKRLQTLPEIPSSVEEL 545
              +           S V ++
Sbjct: 279 PLADAVTAWFPENKQSDVSQI 299

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 97.1 bits (242), Expect = 2e-21
 Identities = 61/370 (16%), Positives = 119/370 (32%), Gaps = 46/370 (12%)

Query: 172 DPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINL---- 227
               L  L+   S++  +  G ++   L  +    +  +T + DL +  NL  +      
Sbjct: 40  QLATLTSLDCHNSSITDM-TGIEKLTGLTKLICTSNN-ITTL-DLSQNTNLTYLACDSNK 96

Query: 228 ---LNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFP 284
              L+ T L  ++    + N L+ L ++    L     N    +   +D S    LTE  
Sbjct: 97  LTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYL--NCARNTLTEIDVSHNTQLTELD 154

Query: 285 LVSGNII------------ELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSIC 332
                 I             L     +I E+   +     L  L+      + ++   + 
Sbjct: 155 CHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNN-ITKLD--LN 209

Query: 333 KLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDC 392
           +   L +L+      L      +  +  L   D     +  L  S   L  L  L     
Sbjct: 210 QNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVNPLTELDVST--LSKLTTLHCIQT 264

Query: 393 SELASLPEKLENLKSLKYLNAEFSAIGQLPS-SISDLNQLKKLKFSGCRGLVLPPLLSGL 451
            +L  +   L +   L Y         ++    ++   QL  L         L   LS  
Sbjct: 265 -DLLEID--LTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD--LSQN 317

Query: 452 SSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNML 511
             L  L+L +  +TE+  D+   + +  L+    H +    SV ++  L     +     
Sbjct: 318 PKLVYLYLNNTELTEL--DVSHNTKLKSLSCVNAHIQDFS-SVGKIPALNNNFEAE-GQT 373

Query: 512 QSLPELPIYL 521
            ++P+  +  
Sbjct: 374 ITMPKETLTN 383

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 94.0 bits (234), Expect = 2e-20
 Identities = 61/413 (14%), Positives = 130/413 (31%), Gaps = 47/413 (11%)

Query: 154 LRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKI 213
           L  L  H  S+  +        L +L    +N+  +     Q   L ++    ++ LT +
Sbjct: 44  LTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL--DLSQNTNLTYLACDSNK-LTNL 100

Query: 214 PDLVETPNLERINL-------LNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYF 266
             +     L  +N        L+ +  P ++      N L+ + ++    L     +   
Sbjct: 101 D-VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCH-LN 158

Query: 267 RSPIAVDFSDCVNLTEFPLVSGNII-----------ELRLWNTRIEEVPSSIECLTNLET 315
           +    +D +    LT        I             L      I ++   +     L  
Sbjct: 159 KKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTF 216

Query: 316 LDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLP 375
           LD S  K L  +   +  L  L + +      L      +  +  L  +   +T +  + 
Sbjct: 217 LDCSSNK-LTEID--VTPLTQLTYFDCSVN-PLTELD--VSTLSKLTTLHCIQTDLLEID 270

Query: 376 SSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLK 435
             + +   L       C ++  L   + +   L  L+ + + I +L   +S   +L  L 
Sbjct: 271 --LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGITELD--LSQNPKLVYLY 324

Query: 436 FSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVK 495
            +      L   +S  + L  L   + +I +  + +G + ++     +      +P    
Sbjct: 325 LNNTELTELD--VSHNTKLKSLSCVNAHIQDFSS-VGKIPALNNNFEAEGQTITMPKETL 381

Query: 496 QLSQLRYLHLSN-----CNMLQSLPELPIYLVYLEAKNCKRLQTLPEIPSSVE 543
             + L      +      N +   P      VY +A N    + L     +V 
Sbjct: 382 TNNSLTIAVSPDLLDQFGNPMNIEPGDG--GVYDQATNTITWENLSTDNPAVT 432

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 88.2 bits (219), Expect = 2e-18
 Identities = 56/307 (18%), Positives = 100/307 (32%), Gaps = 40/307 (13%)

Query: 271 AVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTS 330
            +       LT           L   N+ I ++   IE LT L  L  +    +   +  
Sbjct: 35  TISEEQLATLTS----------LDCHNSSITDMTG-IEKLTGLTKLICTSNN-IT--TLD 80

Query: 331 ICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLG 390
           + +  +L +L       L      +  +  L  ++     +  L  S      L  L+  
Sbjct: 81  LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTNKLTKLDVSQ--NPLLTYLNCA 135

Query: 391 DCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSG 450
             + L  +   + +   L  L+   +        ++   QL  L  S  +   L   +S 
Sbjct: 136 RNT-LTEID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD--VSQ 189

Query: 451 LSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNM 510
              L  L+    NIT++  D+     + +L  S N    +   V  L+QL Y   S  N 
Sbjct: 190 NKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSV-NP 244

Query: 511 LQSLPELPIYLVYLEAKNCKRLQTLPEIPSSVEELDASMLESIYEHSSGIMDGILFFDFT 570
           L  L                +L TL  I + + E+D +    +    +     I   D T
Sbjct: 245 LTELDV----------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVT 294

Query: 571 NCLKLNE 577
           +  +L  
Sbjct: 295 HNTQLYL 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 92.6 bits (231), Expect = 1e-20
 Identities = 52/246 (21%), Positives = 96/246 (39%), Gaps = 27/246 (10%)

Query: 303 VPSSIECLTNLETLDLSFCK--RLKRVSTSICKLKSLCWLELGGCSNLE-TFPEILEKME 359
           +  +      +  LDLS     +   + +S+  L  L +L +GG +NL    P  + K+ 
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 360 HLLEIDLRETAIR-NLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAI 418
            L  + +  T +   +P  +  ++ L  LD    +   +LP  + +L +L  +  + + I
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 419 -GQLPSSISDLNQLKKL------KFSGCRGLVLPPLLSGLSSLTELHLTDCNIT-EIPAD 470
            G +P S    ++L         + +G     +PP  + L+ L  + L+   +  +    
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTG----KIPPTFANLN-LAFVDLSRNMLEGDASVL 216

Query: 471 IGSLSSIVWLALSGNHFE-RLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNC 529
            GS  +   + L+ N     L   V     L  L L N N +     LP  L        
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRN-NRIYG--TLPQGL-----TQL 267

Query: 530 KRLQTL 535
           K L +L
Sbjct: 268 KFLHSL 273

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 80.7 bits (200), Expect = 1e-16
 Identities = 45/287 (15%), Positives = 90/287 (31%), Gaps = 47/287 (16%)

Query: 238 SSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWN 297
            +      ++ L L+G         N+    PI    ++   L    +   N +      
Sbjct: 44  DTDTQTYRVNNLDLSGL--------NLPKPYPIPSSLANLPYLNFLYIGGINNLV----- 90

Query: 298 TRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLE-TFPEILE 356
                +P +I  LT L  L ++       +   + ++K+L  L+      L  T P  + 
Sbjct: 91  ---GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSIS 146

Query: 357 KMEHLLEIDLRETAIRN-----LPSSIEYLEGL-RKLDLGDCSELASLPEKLENLKSLKY 410
            + +L+ I        N     +P S      L   + +        +P    NL +L +
Sbjct: 147 SLPNLVGITFD----GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAF 201

Query: 411 LNA---EFSAIGQLPSSISDLNQLKKL-----KFSGCRGLVLPPLLSGLSSLTELHLTDC 462
           ++         G            +K+       +      L  +     +L  L L + 
Sbjct: 202 VDLSRNMLE--GDASVLFGSDKNTQKIHLAKNSLAF----DLGKV-GLSKNLNGLDLRNN 254

Query: 463 NIT-EIPADIGSLSSIVWLALSGNHFE-RLPTSVKQLSQLRYLHLSN 507
            I   +P  +  L  +  L +S N+    +P     L +      +N
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYAN 300

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.1 bits (131), Expect = 6e-08
 Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 28/153 (18%)

Query: 420 QLPSSISDLNQLK--KLKFSGCRGL---VLPPLLSGLSSLTELHLTDCNIT---EIPADI 471
           Q+   + +   L         C      VL    +    +  L L+  N+     IP+ +
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 472 GSLSSIVWLALSG-NHFE-RLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNC 529
            +L  + +L + G N+    +P ++ +L+QL YL++++ N+  ++P+             
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD--------FLSQI 124

Query: 530 KRLQTLP--------EIPSSVEELDASMLESIY 554
           K L TL          +P S+  L    L  I 
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSL--PNLVGIT 155

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 49/287 (17%), Positives = 81/287 (28%), Gaps = 90/287 (31%)

Query: 198 KLKFIDLHHSQYLT-KIPD-LVETPNLERINLL-------------NCTNLPYIS----- 237
            L F+ +     L   IP  + +   L  + +                  L  +      
Sbjct: 77  YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136

Query: 238 ------SSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNII 291
                  SI +  NL  ++            N      I   +     L           
Sbjct: 137 LSGTLPPSISSLPNLVGITFD---------GN-RISGAIPDSYGSFSKLFTS-------- 178

Query: 292 ELRLWNTRIE-EVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLET 350
            + +   R+  ++P +   L NL  +DLS        S      K+   + L    N   
Sbjct: 179 -MTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK--NSLA 234

Query: 351 FPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDL------GDCSELASLPEKLEN 404
           F                      L   +   + L  LDL      G      +LP+ L  
Sbjct: 235 FD---------------------LG-KVGLSKNLNGLDLRNNRIYG------TLPQGLTQ 266

Query: 405 LKSLKYLNAEFSAI-GQLPSSISDLNQLKKLKFSG----CRGLVLPP 446
           LK L  LN  F+ + G++P    +L +     ++     C G  LP 
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC-GSPLPA 311

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 91.4 bits (227), Expect = 6e-20
 Identities = 60/307 (19%), Positives = 120/307 (39%), Gaps = 17/307 (5%)

Query: 279 NLTEFPL-VSGNIIELRLWNTRIEEVPSSI-ECLTNLETLDLSFCKRLKRVSTSI-CKLK 335
            +TE P  +  N IELR   T++  +         +LE +++S    L+ +   +   L 
Sbjct: 20  KVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79

Query: 336 SLCWLELGGCSNLETFP-EILEKMEHLLEIDLRETAIRNLPSSI-EYLEGLRKLDLGDCS 393
            L  + +   +NL     E  + + +L  + +  T I++LP     +      LD+ D  
Sbjct: 80  KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 139

Query: 394 ELASLPEK-LENLKS-LKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGL-VLPP-LLS 449
            + ++       L      L    + I ++ +S  +  QL +L  S    L  LP  +  
Sbjct: 140 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 450 GLSSLTELHLTDCNITEIPADIGSLSSIVWL-ALSGNHFERLPTSVKQLSQLRYLHLSN- 507
           G S    L ++   I  +P+    L ++  L A S  + ++LP ++++L  L    L+  
Sbjct: 200 GASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256

Query: 508 --CNMLQSLPELPIYLVYLEAKNCKRLQTLPEIPSSVEELDASMLESIYEHSSGIMDGIL 565
             C    +       L  +  K+    Q +  +  +  +  +   ++   +S G      
Sbjct: 257 SHCCAFANWRRQISELHPICNKS-ILRQEVDYMTQARGQRSSLAEDNESSYSRGFDMTYT 315

Query: 566 FFDFTNC 572
            FD+  C
Sbjct: 316 EFDYDLC 322

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 62/264 (23%), Positives = 99/264 (37%), Gaps = 45/264 (17%)

Query: 163 SLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAF----KLKFIDLHHSQYLTKIPDLV- 217
            +  +P +  P N IEL    + +  I   +K AF     L+ I++  +  L  I   V 
Sbjct: 20  KVTEIPSDL-PRNAIELRFVLTKLRVI---QKGAFSGFGDLEKIEISQNDVLEVIEADVF 75

Query: 218 -ETPNLERINLLNCTNLPYISSSI-QNFNNLSVLSLAGCRSLVSFPRNIYFRSP--IAVD 273
              P L  I +    NL YI+    QN  NL  L ++    +   P      S   + +D
Sbjct: 76  SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLD 134

Query: 274 FSDCVNLTEFPL-----VSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVS 328
             D +N+          +S   + L L    I+E+ +S    T L+ L+LS    L+ + 
Sbjct: 135 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP 194

Query: 329 TSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLD 388
                                   ++       + +D+  T I +LPS    LE L+KL 
Sbjct: 195 -----------------------NDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLR 229

Query: 389 LGDCSELASLPEKLENLKSLKYLN 412
                 L  LP  LE L +L   +
Sbjct: 230 ARSTYNLKKLPT-LEKLVALMEAS 252

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 9/91 (9%)

Query: 453 SLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSV-KQLSQLRYLHLSNCNML 511
           S       +  +TEIP+D+    + + L         +          L  + +S  ++L
Sbjct: 10  SNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 512 QSLPE-----LPIYLVYLEAKNCKRLQTLPE 537
           + +       LP  L  +  +    L  +  
Sbjct: 68  EVIEADVFSNLP-KLHEIRIEKANNLLYINP 97

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 90.6 bits (225), Expect = 1e-19
 Identities = 54/299 (18%), Positives = 110/299 (36%), Gaps = 41/299 (13%)

Query: 206 HSQYLTKIPDLVETPNLERINLLNCTNLPYISSSI-QNFNNLSVLSLAGCRSLVSFPRNI 264
            S  L  IP  + T  ++ ++L N   + YIS+S  Q   NL  L L     + +   + 
Sbjct: 39  SSGSLNSIPSGL-TEAVKSLDLSN-NRITYISNSDLQRCVNLQALVLTSNG-INTIEEDS 95

Query: 265 YFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSI-ECLTNLETLDLSFCKR 323
                    FS   +L            L L    +  + SS  + L++L  L+L     
Sbjct: 96  ---------FSSLGSLEH----------LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP- 135

Query: 324 LKRVSTSIC--KLKSLCWLELGGCSNLETFPE-ILEKMEHLLEIDLRETAIRNLPS-SIE 379
            K +  +     L  L  L +G               +  L E+++  + +++    S++
Sbjct: 136 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195

Query: 380 YLEGLRKLDLGDCSELASLPE----KLENLK--SLKYLNAEFSAIGQLPSSISD----LN 429
            ++ +  L L        L E       +++   L+  + +     +L +  ++      
Sbjct: 196 SIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254

Query: 430 QLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADI-GSLSSIVWLALSGNHF 487
             + +K +      +  LL+ +S L EL  +   +  +P  I   L+S+  + L  N +
Sbjct: 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 84.8 bits (210), Expect = 8e-18
 Identities = 48/256 (18%), Positives = 96/256 (37%), Gaps = 21/256 (8%)

Query: 279 NLTEFPL-VSGNIIELRLWNTRIEEVPSSI-ECLTNLETLDLSFCKRLKRVSTSI-CKLK 335
           +L   P  ++  +  L L N RI  + +S  +   NL+ L L+    +  +       L 
Sbjct: 42  SLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLG 100

Query: 336 SLCWLELGGCSNLETFPE-ILEKMEHLLEIDLRETAIRNLPSSI--EYLEGLRKLDLGDC 392
           SL  L+L     L        + +  L  ++L     + L  +    +L  L+ L +G+ 
Sbjct: 101 SLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159

Query: 393 SELASLPEK-LENLKSLKYLNAEFSAIGQLPS-SISDLNQLKKLKFSGCRGLVLPP-LLS 449
                +  K    L  L+ L  + S +      S+  +  +  L     + ++L    + 
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD 219

Query: 450 GLSSLTELHLTD-----CNITEIPADI----GSLSSIVWLALSGNHFERLPTSVKQLSQL 500
             SS+  L L D      + +E+            +   + ++     ++   + Q+S L
Sbjct: 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL 279

Query: 501 RYLHLSNCNMLQSLPE 516
             L  S  N L+S+P+
Sbjct: 280 LELEFSR-NQLKSVPD 294

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 45/328 (13%), Positives = 88/328 (26%), Gaps = 92/328 (28%)

Query: 100 LNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQ-GLRYLPE------ 152
           L+LS  R  ++  +      NL+ L                  L   G+  + E      
Sbjct: 57  LDLSNNRITYISNSDLQRCVNLQAL-----------------VLTSNGINTIEEDSFSSL 99

Query: 153 -ELRYLHWHQYSLKTLPLN-FDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYL 210
             L +L      L  L  + F         L                 L F++L  +   
Sbjct: 100 GSLEHLDLSYNYLSNLSSSWFK-------PLS---------------SLTFLNLLGNP-Y 136

Query: 211 TKIPD---LVETPNLERINLLNCTNLPYISSSI-QNFNNLSVLSLAGCRSLVSFPRNIYF 266
             + +         L+ + + N      I          L  L +     L S+      
Sbjct: 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKS-- 193

Query: 267 RSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSI-ECLTNLETLDLSFCKRLK 325
                       N++           L L   +   +     +  +++E L+L       
Sbjct: 194 -------LKSIQNVS----------HLILHMKQHILLLEIFVDVTSSVECLELR------ 230

Query: 326 RVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLR 385
                      L   E             L K      + + + ++  +   +  + GL 
Sbjct: 231 DTDLDTFHFSELSTGETNS----------LIKKFTFRNVKITDESLFQVMKLLNQISGLL 280

Query: 386 KLDLGDCSELASLPEK-LENLKSLKYLN 412
           +L+      L S+P+   + L SL+ + 
Sbjct: 281 ELEFSRNQ-LKSVPDGIFDRLTSLQKIW 307

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 92.2 bits (229), Expect = 1e-19
 Identities = 73/438 (16%), Positives = 140/438 (31%), Gaps = 46/438 (10%)

Query: 100 LNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQ-GLRYLPE------ 152
           LN+S+     L  +  +++S LR L                  +    ++YL        
Sbjct: 26  LNISQNYISELWTSDILSLSKLRIL-----------------IISHNRIQYLDISVFKFN 68

Query: 153 -ELRYLHWHQYSLKTLPLNFDP-ENLIELNLPYSNVEQIWEGKKQAF----KLKFIDLHH 206
            EL YL      L  +     P  NL  L+L ++  + +   K   F    +LKF+ L  
Sbjct: 69  QELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICK--EFGNMSQLKFLGLST 124

Query: 207 SQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYF 266
           +  L K   L          LL            +   + +  SL            I  
Sbjct: 125 TH-LEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILD 183

Query: 267 RSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKR 326
            S   V   +  N+      +     L +          S   L N+ET   SF + L+ 
Sbjct: 184 VSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243

Query: 327 VSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSI-EYLEGLR 385
           V  +     S+  ++L G  +   F      ++ L    +         S I E    + 
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303

Query: 386 KLDLGDCSELASLPEKL-ENLKSLKYLNAEFSAIGQLPSSISD-LNQLKKLKFSGCRGLV 443
             +    S    +       +    +L+   + +          L +L+ L     +   
Sbjct: 304 IKNF-TVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE 362

Query: 444 LPPL---LSGLSSLTELHLTDCNITEIPADIG--SLSSIVWLALSGNHFERLPTSVKQLS 498
           L  +    + + SL +L ++  +++            S++ L +S N             
Sbjct: 363 LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-CLPP 421

Query: 499 QLRYLHLSNCNMLQSLPE 516
           +++ L L + N ++S+P+
Sbjct: 422 RIKVLDLHS-NKIKSIPK 438

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.8 bits (124), Expect = 6e-07
 Identities = 60/387 (15%), Positives = 118/387 (30%), Gaps = 59/387 (15%)

Query: 201 FIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSS-IQNFNNLSVLSLAGCRSLVS 259
            +D   +  L  +P  + +     +N+ +   +  + +S I + + L +L ++  R +  
Sbjct: 4   LVDRSKNG-LIHVPKDL-SQKTTILNI-SQNYISELWTSDILSLSKLRILIISHNR-IQY 59

Query: 260 FPRNIYFRSPIAVDFSDCVNLTEFPLVS-----------GNIIELRLWNTRIEEVPSS-- 306
              ++         F     L    L              N+  L L     + +P    
Sbjct: 60  LDISV---------FKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKE 110

Query: 307 IECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDL 366
              ++ L+ L LS     K     I  L       L          E  E ++      L
Sbjct: 111 FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISK--VLLVLGETYGEKEDPEGLQDFNTESL 168

Query: 367 RETAIRNLPSS------------IEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLN-- 412
                 N                +E       L+   CS   S+  KL+    L  L   
Sbjct: 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLN 228

Query: 413 ------AEFSAIGQL--PSSISDLNQLKKLKFSGCRGLVLPPLL-SGLSSLTELHLTDCN 463
                   F  I QL   +++   + +  +K  G           + L +L+   +    
Sbjct: 229 NIETTWNSFIRILQLVWHTTVWYFS-ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287

Query: 464 ITEIPADI-GSLSSIVWLALSGNHFERLPTSV-KQLSQLRYLHLSNCNMLQSLP-ELPIY 520
                + I    S++     + +    +      ++S   +L  SN N+L     E   +
Sbjct: 288 FGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN-NLLTDTVFENCGH 346

Query: 521 LVYLEAKNCK--RLQTLPEIPSSVEEL 545
           L  LE    +  +L+ L +I     ++
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQM 373

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 91.0 bits (226), Expect = 2e-19
 Identities = 64/238 (26%), Positives = 99/238 (41%), Gaps = 33/238 (13%)

Query: 279 NLTEFPL-VSGNIIELRLWNTRIEEVPSSI-ECLTNLETLDLSFCKRLKRVSTSI-CKLK 335
           NL E P  +S N   L L   +I+ +  +  + L +LE L LS    ++ +       L 
Sbjct: 54  NLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLA 112

Query: 336 SLCWLELGGCSNLETFPE-ILEKMEHLLEIDLRETAIRNLPSSI-EYLEGLRKLDLGDCS 393
           +L  LEL     L T P      +  L E+ LR   I ++PS     +  LR+LDLG+  
Sbjct: 113 NLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK 171

Query: 394 ELASLPEK-LENLKSLKYLN---------AEFSAIGQL--------------PSSISDLN 429
            L+ + E   E L +L+YLN            + + +L              P S   L 
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLM 231

Query: 430 QLKKLKFSGCRGLVLPP-LLSGLSSLTELHLTDCNITEIPADI-GSLSSIVWLALSGN 485
            L+KL     +  V+       L SL E++L   N+T +P D+   L  +  + L  N
Sbjct: 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.8 bits (223), Expect = 4e-19
 Identities = 59/262 (22%), Positives = 95/262 (36%), Gaps = 42/262 (16%)

Query: 287 SGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCS 346
           S    ++      + EVP  I   TN   L+L   +           ++ +         
Sbjct: 42  SNQFSKVICVRKNLREVPDGI--STNTRLLNLHENQ-----------IQIIKVNSFKHLR 88

Query: 347 NLETFPEILEKMEHLLEIDLRETAIRNLPSSI-EYLEGLRKLDLGDCSELASLPEK-LEN 404
           +LE              + L    IR +       L  L  L+L D   L ++P      
Sbjct: 89  HLE-------------ILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVY 134

Query: 405 LKSLKYLNAEFSAIGQLPSSI-SDLNQLKKLKFSGCRGL-VLPP-LLSGLSSLTELHLTD 461
           L  LK L    + I  +PS   + +  L++L     + L  +      GLS+L  L+L  
Sbjct: 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194

Query: 462 CNITEIPADIGSLSSIVWLALSGNHFERLPTSV-KQLSQLRYLHLSNCNMLQSLPE---- 516
           CN+ EIP  +  L  +  L LSGNH   +     + L  L+ L +   + +Q +      
Sbjct: 195 CNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ-SQIQVIERNAFD 252

Query: 517 -LPIYLVYLEAKNCKRLQTLPE 537
            L   LV +   +   L  LP 
Sbjct: 253 NLQ-SLVEINLAHN-NLTLLPH 272

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.8 bits (140), Expect = 8e-09
 Identities = 51/263 (19%), Positives = 90/263 (34%), Gaps = 61/263 (23%)

Query: 100 LNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQ-GLRYLPEE----- 153
           LNL + +   +  N F ++ +L  L                  L +  +R +        
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEIL-----------------QLSRNHIRTIEIGAFNGL 111

Query: 154 --LRYLHWHQYSLKTLPLN--FDPENLIELNLPYSNVEQIWEGKKQAF----KLKFIDLH 205
             L  L      L T+P         L EL L  + +E I      AF     L+ +DL 
Sbjct: 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY---AFNRIPSLRRLDLG 168

Query: 206 HSQYLTKIPD--LVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRN 263
             + L+ I +       NL  +NL  C NL  I  ++     L  L L+G   L +    
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMC-NLREI-PNLTPLIKLDELDLSGNH-LSAIRPG 225

Query: 264 IYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPS-SIECLTNLETLDLSFCK 322
                     F   ++L           +L +  ++I+ +   + + L +L  ++L+   
Sbjct: 226 S---------FQGLMHLQ----------KLWMIQSQIQVIERNAFDNLQSLVEINLAHN- 265

Query: 323 RLKRVSTSICK-LKSLCWLELGG 344
            L  +   +   L  L  + L  
Sbjct: 266 NLTLLPHDLFTPLHHLERIHLHH 288

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 92.1 bits (228), Expect = 2e-19
 Identities = 49/234 (20%), Positives = 98/234 (41%), Gaps = 12/234 (5%)

Query: 292 ELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETF 351
           E    +T I+++    +        +L   K +    T   +L S+  +      ++++ 
Sbjct: 3   ETITVSTPIKQI-FPDDAFAETIKDNLKK-KSVTDAVT-QNELNSIDQIIANNS-DIKSV 58

Query: 352 PEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYL 411
            + ++ + ++ ++ L    + ++   +  L+ L  L L +  ++  L   L++LK LK L
Sbjct: 59  -QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDEN-KIKDL-SSLKDLKKLKSL 114

Query: 412 NAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADI 471
           + E + I  + + +  L QL+ L     +   +  L S L+ L  L L D  I++I   +
Sbjct: 115 SLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVL-SRLTKLDTLSLEDNQISDIV-PL 171

Query: 472 GSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLE 525
             L+ +  L LS NH   L  ++  L  L  L L +   L         LV   
Sbjct: 172 AGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.3 bits (135), Expect = 3e-08
 Identities = 30/215 (13%), Positives = 74/215 (34%), Gaps = 31/215 (14%)

Query: 152 EELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLT 211
            E    +  + S+       +  ++ ++    S+++ + +G +    +  + L+ ++ LT
Sbjct: 21  AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNK-LT 78

Query: 212 KIPDLVETPNLERINLLN-----------CTNLPYIS---------SSIQNFNNLSVLSL 251
            I  L    NL  + L                L  +S         + + +   L  L L
Sbjct: 79  DIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYL 138

Query: 252 AGCR--SLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSG--NIIELRLWNTRIEEVPSSI 307
              +   +    R     +   +   D   +++   ++G   +  L L    I ++  ++
Sbjct: 139 GNNKITDITVLSRLTKLDT---LSLEDN-QISDIVPLAGLTKLQNLYLSKNHISDL-RAL 193

Query: 308 ECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLEL 342
             L NL+ L+L   + L +       L     ++ 
Sbjct: 194 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 228

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 55/270 (20%), Positives = 105/270 (38%), Gaps = 41/270 (15%)

Query: 279 NLTEFPL-VSGNIIELRLWNTRIEEVP-SSIECLTNLETLDLSFCKRLKRVSTSI-CKLK 335
            L + P  +  +   L L N +I E+     + L NL TL L   K + ++S      L 
Sbjct: 42  GLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLV 100

Query: 336 SLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSI-EYLEGLRKLDLGD-CS 393
            L  L L   + L+  PE + K   L E+ + E  I  +  S+   L  +  ++LG    
Sbjct: 101 KLERLYLSK-NQLKELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157

Query: 394 ELASLPEK-LENLKSLKYLNAEFSAIGQLP----SSISDL----NQLKKLK---FSGCRG 441
           + + +     + +K L Y+    + I  +P     S+++L    N++ K+      G   
Sbjct: 158 KSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNN 217

Query: 442 L-----------VLPP-LLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFER 489
           L            +    L+    L ELHL +  + ++P  +     I  + L  N+   
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277

Query: 490 LPTSV-------KQLSQLRYLHLSNCNMLQ 512
           + ++         + +    + L + N +Q
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFS-NPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.3 bits (178), Expect = 8e-14
 Identities = 51/315 (16%), Positives = 112/315 (35%), Gaps = 48/315 (15%)

Query: 163 SLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFK----LKFIDLHHSQYLTKIPD--L 216
            L+ +P +  P +   L+L  +N  +I E K   FK    L  + L +++ ++KI     
Sbjct: 42  GLEKVPKDL-PPDTALLDL-QNN--KITEIKDGDFKNLKNLHTLILINNK-ISKISPGAF 96

Query: 217 VETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSD 276
                LER+ L +   L  +   +     L  L +     +    +++         F+ 
Sbjct: 97  APLVKLERLYL-SKNQLKELPEKM--PKTLQELRVHENE-ITKVRKSV---------FNG 143

Query: 277 CVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKS 336
              +    L   N     L ++ IE    + + +  L  + ++    +  +   +    S
Sbjct: 144 LNQMIVVEL-GTN----PLKSSGIE--NGAFQGMKKLSYIRIADT-NITTIPQGL--PPS 193

Query: 337 LCWLELGGCSNLETFPE-ILEKMEHLLEIDLRETAIRNLPS-SIEYLEGLRKLDLGDCSE 394
           L  L L G   +       L+ + +L ++ L   +I  + + S+     LR+L L +   
Sbjct: 194 LTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK- 251

Query: 395 LASLPEKLENLKSLKYLNAEFSAIGQLPSS-------ISDLNQLKKLKFSG--CRGLVLP 445
           L  +P  L + K ++ +    + I  + S+        +       +       +   + 
Sbjct: 252 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311

Query: 446 P-LLSGLSSLTELHL 459
           P     +     + L
Sbjct: 312 PSTFRCVYVRAAVQL 326

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 57/339 (16%), Positives = 98/339 (28%), Gaps = 94/339 (27%)

Query: 99  LLNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQ-GLRYLPEE---- 153
           LL+L   +   +    F N+ NL  L                  L    +  +       
Sbjct: 56  LLDLQNNKITEIKDGDFKNLKNLHTL-----------------ILINNKISKISPGAFAP 98

Query: 154 ---LRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYL 210
              L  L+  +  LK LP    P+ L EL                        +H ++ +
Sbjct: 99  LVKLERLYLSKNQLKELPEKM-PKTLQEL-----------------------RVHENE-I 133

Query: 211 TKIPD--LVETPNLERINL-LNCTNLPYISSSI-QNFNNLSVLSLAGCRSLVSFPRNIYF 266
           TK+          +  + L  N      I +   Q    LS + +A    + + P+ +  
Sbjct: 134 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGL-- 190

Query: 267 RSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPS-SIECLTNLETLDLSFCKRLK 325
                            P    ++ EL L   +I +V + S++ L NL  L LSF   + 
Sbjct: 191 ----------------PP----SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-IS 229

Query: 326 RVSTSICK-LKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSS------- 377
            V          L  L L     L   P  L   +++  + L    I  + S+       
Sbjct: 230 AVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288

Query: 378 IEYLEGLRKLDLGD----CSELASLPEKLENLKSLKYLN 412
                    + L        E+   P     +     + 
Sbjct: 289 NTKKASYSGVSLFSNPVQYWEIQ--PSTFRCVYVRAAVQ 325

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 14/102 (13%)

Query: 453 SLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSV-KQLSQLRYLHLSNCNML 511
            L  +  +D  + ++P D+        L L  N    +     K L  L  L L N N +
Sbjct: 32  HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN-NKI 88

Query: 512 QSLPE-----LPIYLVYLE-AKNCKRLQTLP-EIPSSVEELD 546
             +       L   L  L  +KN  +L+ LP ++P +++EL 
Sbjct: 89  SKISPGAFAPLV-KLERLYLSKN--QLKELPEKMPKTLQELR 127

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 31/172 (18%), Positives = 68/172 (39%), Gaps = 23/172 (13%)

Query: 154 LRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFK----LKFIDLHHSQY 209
           L Y+     ++ T+P    P +L EL+L  + + ++      + K    L  + L  +  
Sbjct: 173 LSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAA---SLKGLNNLAKLGLSFNS- 227

Query: 210 LTKIPD--LVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFR 267
           ++ + +  L  TP+L  ++L N   L  +   + +   + V+ L    ++ +   N  F 
Sbjct: 228 ISAVDNGSLANTPHLRELHL-NNNKLVKVPGGLADHKYIQVVYLHN-NNISAIGSND-FC 284

Query: 268 SPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLS 319
            P     +   + +   L   N ++       I+  PS+  C+     + L 
Sbjct: 285 PPGY--NTKKASYSGVSL-FSNPVQY----WEIQ--PSTFRCVYVRAAVQLG 327

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 87.1 bits (216), Expect = 1e-18
 Identities = 41/203 (20%), Positives = 83/203 (40%), Gaps = 19/203 (9%)

Query: 333 KLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDC 392
            L +   +  G   +  T       ++ +  +    T +  +   ++YL  L  L+L D 
Sbjct: 17  ALANAIKIAAG--KSNVTDTVTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDN 73

Query: 393 SELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLS 452
            ++  L   L+NL  +  L    + +  + S+I+ L  +K L  +  +   + PL +GLS
Sbjct: 74  -QITDLAP-LKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTPL-AGLS 129

Query: 453 SLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQ 512
           +L  L+L    IT I   +  L+++ +L++       L   +  LS+L  L   + N + 
Sbjct: 130 NLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADD-NKIS 186

Query: 513 SLPELPIYLVYLEAKNCKRLQTL 535
            +  L          +   L  +
Sbjct: 187 DISPL---------ASLPNLIEV 200

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 83.6 bits (207), Expect = 1e-17
 Identities = 45/222 (20%), Positives = 100/222 (45%), Gaps = 15/222 (6%)

Query: 275 SDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKL 334
           +D V   +       I  L  + T +  +   ++ L NL  L+L   + +  ++  +  L
Sbjct: 32  TDTVTQADLD----GITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQ-ITDLA-PLKNL 84

Query: 335 KSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSE 394
             +  LEL G   L+     +  ++ +  +DL  T I ++ + +  L  L+ L L    +
Sbjct: 85  TKITELELSGN-PLKNVSA-IAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLN-Q 140

Query: 395 LASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSL 454
           + ++   L  L +L+YL+   + +  L + +++L++L  LK    +   + PL + L +L
Sbjct: 141 ITNISP-LAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISDISPL-ASLPNL 197

Query: 455 TELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQ 496
            E+HL +  I+++   + + S++  + L+       P     
Sbjct: 198 IEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFYNN 238

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 88.8 bits (220), Expect = 2e-18
 Identities = 72/482 (14%), Positives = 141/482 (29%), Gaps = 82/482 (17%)

Query: 100 LNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQ-GLRYLPE------ 152
           L+LS+     L       +S LR L                  L    +R L        
Sbjct: 57  LSLSQNSISELRMPDISFLSELRVL-----------------RLSHNRIRSLDFHVFLFN 99

Query: 153 -ELRYLHWHQYSLKTLPLNFDP-ENLIELNLPYSNVEQIWEGKKQAF----KLKFIDLHH 206
            +L YL      L+ +     P  +L  L+L +++ + +   K   F    KL F+ L  
Sbjct: 100 QDLEYLDVSHNRLQNIS--CCPMASLRHLDLSFNDFDVLPVCK--EFGNLTKLTFLGLSA 155

Query: 207 SQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYF 266
           ++   ++  L          LL+  +        ++    +   L      + F  N  F
Sbjct: 156 AK-FRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-----HLVFHPNSLF 209

Query: 267 RSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSS-------------------- 306
              + +  +   +L    +   +    RL     E                         
Sbjct: 210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL 269

Query: 307 -----IECLTNLETLDLSFCKRLKRVSTSICK--LKSLCWLELGGCSNLETFPEILEKME 359
                   +  L   +L+  +R+ R   +  +  LKSL    +     L +   +     
Sbjct: 270 FQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA 329

Query: 360 HLLEIDLRETAIRNLPSSI-EYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAI 418
            +    L  +    +             L+        S+ +    LK L+ L  + + +
Sbjct: 330 EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389

Query: 419 GQLPSSISDLNQLKKLKFSGCRGLVLPP-----LLSGLSSLTELHLTDCNITEIPADIGS 473
                       +  L+        L         +   S+  L+L+   +T        
Sbjct: 390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP 449

Query: 474 LSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQ 533
              +  L L  N    +P  V  L  L+ L++++ N L+S+P+               LQ
Sbjct: 450 -PKVKVLDLHNNRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVF-------DRLTSLQ 500

Query: 534 TL 535
            +
Sbjct: 501 YI 502

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 58/374 (15%), Positives = 119/374 (31%), Gaps = 78/374 (20%)

Query: 111 DGNVFVNMSNLRFLKFYMPEYKGVPIMS------SKVHLDQGLRYLPE-----------E 153
               F N++ L FL     +++ + ++       S + LD    ++              
Sbjct: 138 VCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197

Query: 154 LRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAF--------KLKFIDLH 205
           + +L +H  SL ++ +N     L  L L    +      +   F         L  + L 
Sbjct: 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257

Query: 206 H----SQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFP 261
           H     +   K+        +E +N+ N T    I      ++  ++ SL     +    
Sbjct: 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL----MIEHVK 313

Query: 262 RNIYFRSPIAVDFSDCVNLTE--------------FPLVSGNIIELRLWNTRIEEVPSSI 307
             ++  S  A+ +S    +                 P    +   L        +     
Sbjct: 314 NQVFLFSKEAL-YSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQG 372

Query: 308 -ECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLEL----------GGCSNLETFPEILE 356
              L  L+TL L     LK         K++  LE                   + E + 
Sbjct: 373 CSTLKRLQTLILQ-RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431

Query: 357 KM----------------EHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPE 400
            +                  +  +DL    I ++P  + +L+ L++L++   ++L S+P+
Sbjct: 432 VLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVAS-NQLKSVPD 490

Query: 401 -KLENLKSLKYLNA 413
              + L SL+Y+  
Sbjct: 491 GVFDRLTSLQYIWL 504

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 86.2 bits (214), Expect = 3e-18
 Identities = 41/232 (17%), Positives = 95/232 (40%), Gaps = 20/232 (8%)

Query: 289 NIIELRLWNTRIEEVPS-SIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSN 347
           ++  L L N +I ++   +   L  L+ L +S    L  +  ++    SL  L +     
Sbjct: 79  HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNL--PSSLVELRIHDN-R 134

Query: 348 LETFPE-ILEKMEHLLEIDLRETAIRNLPSSIEYLEG--LRKLDLGDCSELASLPEKLEN 404
           +   P+ +   + ++  I++    + N        +G  L  L + +   L  +P+ L  
Sbjct: 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK-LTGIPKDL-- 191

Query: 405 LKSLKYLNAEFSAIGQLPS-SISDLNQLKKLKFSGCRGLVLPP-LLSGLSSLTELHLTDC 462
            ++L  L+ + + I  +    +   ++L +L     +  ++    LS L +L ELHL + 
Sbjct: 192 PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251

Query: 463 NITEIPADIGSLSSIVWLALSGNHFERLPTSV-------KQLSQLRYLHLSN 507
            ++ +PA +  L  +  + L  N+  ++  +         + +    + L N
Sbjct: 252 KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 12/171 (7%)

Query: 360 HLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEK-LENLKSLKYLNAEFSAI 418
           HL  +   +  ++ +P  I        LDL +   ++ L +   + L+ L  L    + I
Sbjct: 34  HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKI 90

Query: 419 GQLPS-SISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADI-GSLSS 476
            ++   + S L +L+KL  S    + +PP L   SSL EL + D  I ++P  +   L +
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRN 148

Query: 477 IVWLALSGNHFER--LPTSVKQLSQLRYLHLSNCNMLQSLP-ELPIYLVYL 524
           +  + + GN  E            +L YL +S    L  +P +LP  L  L
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE-AKLTGIPKDLPETLNEL 198

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.8 bits (122), Expect = 8e-07
 Identities = 45/332 (13%), Positives = 94/332 (28%), Gaps = 81/332 (24%)

Query: 99  LLNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQ-GLRYLPEELRYL 157
           LL+L       L  + F  + +L  L                  L    +  + E+    
Sbjct: 58  LLDLQNNDISELRKDDFKGLQHLYAL-----------------VLVNNKISKIHEK---- 96

Query: 158 HWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFK-LKFIDLHHSQYLTKIPD- 215
                +   L        L +L +   N   + E        L  + +H ++ + K+P  
Sbjct: 97  -----AFSPLR------KLQKLYI-SKN--HLVEIPPNLPSSLVELRIHDNR-IRKVPKG 141

Query: 216 -LVETPNLERINL-LNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVD 273
                 N+  I +  N            +   L+ L ++  + L   P+++         
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK-LTGIPKDL--------- 191

Query: 274 FSDCVNLTEFPLVSGNIIELRLWNTRIEEVPS-SIECLTNLETLDLSFCKRLKRVSTSIC 332
                           + EL L + +I+ +    +   + L  L L   + ++ +     
Sbjct: 192 PE-------------TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSL 237

Query: 333 K-LKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSI-------EYLEGL 384
             L +L  L L     L   P  L  ++ L  + L    I  +  +              
Sbjct: 238 SFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYY 296

Query: 385 RKLDLGD----CSELASLPEKLENLKSLKYLN 412
             + L +      E+   P     +     + 
Sbjct: 297 NGISLFNNPVPYWEVQ--PATFRCVTDRLAIQ 326

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 42/233 (18%), Positives = 81/233 (34%), Gaps = 37/233 (15%)

Query: 100 LNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHW 159
           L +   R   +   VF  + N+  ++      +             GL+     L YL  
Sbjct: 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG---AFDGLK-----LNYLRI 179

Query: 160 HQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAF----KLKFIDLHHSQYLTKIPD 215
            +  L  +P +  PE L EL+L ++ ++ I            KL  + L H+Q +  I +
Sbjct: 180 SEAKLTGIPKDL-PETLNELHLDHNKIQAIELE---DLLRYSKLYRLGLGHNQ-IRMIEN 234

Query: 216 --LVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVD 273
             L   P L  ++L +   L  + + + +   L V+ L     +     N         D
Sbjct: 235 GSLSFLPTLRELHL-DNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVN---------D 283

Query: 274 FSDCVNLTEFPLVSGNIIELRLWNTRIEEV---PSSIECLTNLETLDLSFCKR 323
           F       +          + L+N  +      P++  C+T+   +     K+
Sbjct: 284 FCPVGFGVKRA----YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 332

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 36/223 (16%), Positives = 86/223 (38%), Gaps = 16/223 (7%)

Query: 276 DCVNLTEFPLVSGNIIELRLWNTRIEEVPS-SIECLTNLETLDLSFCKRLKRVSTSI-CK 333
            C ++   P +  +   L+L  T +  +PS +   L N+  + +S    L+++ +     
Sbjct: 19  TCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN 78

Query: 334 LKSLCWLELGGCSNLETFP-EILEKMEHLLEIDLRETAIRNLP--SSIEYLEGLRKLDLG 390
           L  +  +E+    NL     + L+++  L  + +  T ++  P  + +   +    L++ 
Sbjct: 79  LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEIT 138

Query: 391 DCSELASLPE----KLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGL-VLP 445
           D   + S+P      L N      L    +    +     +  +L  +  +  + L V+ 
Sbjct: 139 DNPYMTSIPVNAFQGLCNE--TLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVID 196

Query: 446 P-LLSGL-SSLTELHLTDCNITEIPADIGSLSSIVWLALSGNH 486
                G+ S  + L ++  ++T +P+    L  +  L      
Sbjct: 197 KDAFGGVYSGPSLLDVSQTSVTALPS--KGLEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 78.1 bits (193), Expect = 3e-16
 Identities = 39/209 (18%), Positives = 76/209 (36%), Gaps = 22/209 (10%)

Query: 345 CSNLETFPEILEKMEHLLEIDLRETAIRNLPS-SIEYLEGLRKLDLGDCSELASLPEKL- 402
           C +++  P +    + L    L ET +R +PS +   L  + ++ +     L  L     
Sbjct: 20  CKDIQRIPSLPPSTQTL---KLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF 76

Query: 403 ENLKSLKYL----NAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPL--LSGLSSLTE 456
            NL  + ++        + I   P ++ +L  LK L        + P L  +        
Sbjct: 77  YNLSKVTHIEIRNTRNLTYID--PDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFI 134

Query: 457 LHLTDCN-ITEIPADI--GSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQS 513
           L +TD   +T IP +   G  +  + L L  N F  +       ++L  ++L+    L  
Sbjct: 135 LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTV 194

Query: 514 LPE-----LPIYLVYLEAKNCKRLQTLPE 537
           + +     +      L+      +  LP 
Sbjct: 195 IDKDAFGGVYSGPSLLDVSQT-SVTALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 49/293 (16%), Positives = 91/293 (31%), Gaps = 102/293 (34%)

Query: 100 LNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHW 159
           L L +T    +  + F N+ N+  +                               Y+  
Sbjct: 36  LKLIETHLRTIPSHAFSNLPNISRI-------------------------------YVSI 64

Query: 160 HQYSLKTLPLN-FDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLV- 217
              +L+ L  + F        NL                K+  I++ +++ LT I     
Sbjct: 65  DV-TLQQLESHSFY-------NLS---------------KVTHIEIRNTRNLTYIDPDAL 101

Query: 218 -ETPNLERINLLNC--TNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDF 274
            E P L+ + + N      P + + + + +   +L +     + S P N          F
Sbjct: 102 KELPLLKFLGIFNTGLKMFPDL-TKVYSTDIFFILEITDNPYMTSIPVNA---------F 151

Query: 275 SDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKL 334
               N T           L+L+N     V       T L+ + L+  K L  +       
Sbjct: 152 QGLCNETL---------TLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK----- 197

Query: 335 KSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKL 387
                        + + P +L         D+ +T++  LPS    LE L++L
Sbjct: 198 --------DAFGGVYSGPSLL---------DVSQTSVTALPSKG--LEHLKEL 231

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 54/252 (21%), Positives = 87/252 (34%), Gaps = 40/252 (15%)

Query: 276 DCVN--LTEFPL-VSGNIIELRLWNTRIEEVPSSI-ECLTNLETLDLSFCKRLKRVSTSI 331
            C    L   P+ +      + L   RI  VP++      NL  L L     L R+  + 
Sbjct: 17  SCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAA 75

Query: 332 -CKLKSLCWLELGGCSNLETFP-EILEKMEHLLEIDLRETAIRNLPSSI-EYLEGLRKLD 388
              L  L  L+L   + L +        +  L  + L    ++ L   +   L  L+ L 
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135

Query: 389 LGDCSELASLPEK-LENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPL 447
           L D + L +LP+    +L +L +L         L       N++  +             
Sbjct: 136 LQDNA-LQALPDDTFRDLGNLTHLF--------L-----HGNRISSVP---------ERA 172

Query: 448 LSGLSSLTELHLTDCNITEIPADI-GSLSSIVWLALSGNHFERLPTSV-KQLSQLRYLHL 505
             GL SL  L L    +  +       L  ++ L L  N+   LPT     L  L+YL L
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232

Query: 506 SN------CNML 511
           ++      C   
Sbjct: 233 NDNPWVCDCRAR 244

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 34/161 (21%), Positives = 69/161 (42%), Gaps = 10/161 (6%)

Query: 362 LEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEK-LENLKSLKYLNAEFSAIGQ 420
           +     +  ++ +P  I      +++ L     ++ +P       ++L  L    + + +
Sbjct: 14  VTTSCPQQGLQAVPVGI--PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLAR 70

Query: 421 LPSSI-SDLNQLKKLKFSGCRGL-VLPP-LLSGLSSLTELHLTDCNITEIPADI-GSLSS 476
           + ++  + L  L++L  S    L  + P    GL  L  LHL  C + E+   +   L++
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 477 IVWLALSGNHFERLPTSV-KQLSQLRYLHLSNCNMLQSLPE 516
           + +L L  N  + LP    + L  L +L L   N + S+PE
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPE 170

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 81.3 bits (201), Expect = 5e-17
 Identities = 49/228 (21%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 297 NTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILE 356
            T I+++  S +        +L   K +    T   +L S+  +      ++++    ++
Sbjct: 11  PTPIKQI-FSDDAFAETIKDNLKK-KSVTDAVT-QNELNSIDQIIANNS-DIKSVQG-IQ 65

Query: 357 KMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFS 416
            + ++ ++ L    + ++   +  L+ L  L L +  ++  L   L++LK LK L+ E +
Sbjct: 66  YLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDEN-KVKDL-SSLKDLKKLKSLSLEHN 122

Query: 417 AIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSS 476
            I  + + +  L QL+ L     +   +  L S L+ L  L L D  I++I   +  L+ 
Sbjct: 123 GISDI-NGLVHLPQLESLYLGNNKITDITVL-SRLTKLDTLSLEDNQISDIV-PLAGLTK 179

Query: 477 IVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYL 524
           +  L LS NH   L  ++  L  L  L L +   L         LV  
Sbjct: 180 LQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVP 226

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.4 bits (113), Expect = 8e-06
 Identities = 31/218 (14%), Positives = 69/218 (31%), Gaps = 37/218 (16%)

Query: 152 EELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLT 211
            E    +  + S+       +  ++ ++    S+++ + +G +    +  + L+ ++ LT
Sbjct: 24  AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNK-LT 81

Query: 212 KIPDLVETPNLERIN-----------LLNCTNLPYIS---------SSIQNFNNLSVLSL 251
            I  L    NL  +            L +   L  +S         + + +   L  L L
Sbjct: 82  DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYL 141

Query: 252 AGCR-----SLVSFP--RNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVP 304
              +      L        +        D      LT        +  L L    I ++ 
Sbjct: 142 GNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT-------KLQNLYLSKNHISDL- 193

Query: 305 SSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLEL 342
            ++  L NL+ L+L   + L +       L     ++ 
Sbjct: 194 RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.9 bits (200), Expect = 8e-17
 Identities = 49/212 (23%), Positives = 79/212 (37%), Gaps = 14/212 (6%)

Query: 309 CLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRE 368
            + +   ++    + L  +   +   K    L L            L     L +++L  
Sbjct: 8   KVASHLEVNCDK-RNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 369 TAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISD- 427
             +  L      L  L  LDL     L SLP   + L +L  L+  F+ +  LP      
Sbjct: 65  AELTKLQVDGT-LPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 428 LNQLKKLKFSGCRGLVLPP-LLSGLSSLTELHLTDCNITEIPADI-GSLSSIVWLALSGN 485
           L +L++L   G     LPP LL+    L +L L + N+TE+PA +   L ++  L L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 486 HFERLPTSVKQLSQLRYLHLSN------CNML 511
               +P        L +  L        C +L
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGNPWLCNCEIL 214

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.1 bits (177), Expect = 7e-14
 Identities = 44/202 (21%), Positives = 78/202 (38%), Gaps = 8/202 (3%)

Query: 287 SGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCS 346
             + +E+      +  +P  +    +   L LS          ++     L  L L    
Sbjct: 9   VASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-- 64

Query: 347 NLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKL-ENL 405
              T  ++   +  L  +DL    +++LP   + L  L  LD+     L SLP      L
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGL 123

Query: 406 KSLKYLNAEFSAIGQLPSSI-SDLNQLKKLKFSGCRGLVLPP-LLSGLSSLTELHLTDCN 463
             L+ L  + + +  LP  + +   +L+KL  +      LP  LL+GL +L  L L + +
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 464 ITEIPADIGSLSSIVWLALSGN 485
           +  IP        + +  L GN
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 8/130 (6%)

Query: 391 DCSE--LASLPEKLENLKSLKYLNAEFSAIGQLPSSI-SDLNQLKKLKFSGCRGLVLPPL 447
           +C +  L +LP  L   K    L+   + +     +      +L +L         L   
Sbjct: 16  NCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD 73

Query: 448 LSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSV-KQLSQLRYLHLS 506
              L  L  L L+   +  +P    +L ++  L +S N    LP    + L +L+ L+L 
Sbjct: 74  -GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132

Query: 507 NCNMLQSLPE 516
             N L++LP 
Sbjct: 133 G-NELKTLPP 141

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 7/100 (7%)

Query: 449 SGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSV-KQLSQLRYLHLSN 507
           S ++S  E++    N+T +P D+        L LS N       +     ++L  L+L  
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 508 CNMLQSLPELPIYLVYLEAKNC--KRLQTLPEIPSSVEEL 545
              L  L      L  L   +    +LQ+LP +  ++  L
Sbjct: 65  -AELTKLQVDG-TLPVLGTLDLSHNQLQSLPLLGQTLPAL 102

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 66/402 (16%), Positives = 139/402 (34%), Gaps = 76/402 (18%)

Query: 150 LPEELRYLHWHQYSLKTL-PLNFDP-ENLIELNLPYSNVEQIWEGKKQAF----KLKFID 203
           LP  + Y+     S+  L   +F   ++L  L +       +       F     L  + 
Sbjct: 28  LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR--NNTFRGLSSLIILK 85

Query: 204 LHHSQYLTKIPDLV--ETPNLERINL----LNCTNLPYISSSIQNFNNLSVLSLAGCRSL 257
           L ++Q   ++         NLE + L    L+   L    +  +   +L +L L     +
Sbjct: 86  LDYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNN-I 141

Query: 258 VSFPRNIYFRSPIA---VDFS----DCVNLTEF-PLVSGNIIELRLWNTRIEEVP----S 305
                  +F +      +D +      +   +       +   LRL +  ++++      
Sbjct: 142 KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201

Query: 306 SIEC-----LTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEH 360
             +C      T++ TLDLS     + ++       +   ++    SN            +
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS-----------Y 250

Query: 361 LLEIDLRETAIRNLPSSIEY---LEGLRKLDLGDCSELASLPEKL-ENLKSLKYLNAEFS 416
            +      T  ++  +         G++  DL   S++ +L + +  +   L+ L     
Sbjct: 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK-SKIFALLKSVFSHFTDLEQLT---- 305

Query: 417 AIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADI-GSLS 475
                   ++  N++ K+               GL+ L +L+L+   +  I + +  +L 
Sbjct: 306 --------LAQ-NEINKID---------DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347

Query: 476 SIVWLALSGNHFERLPTSV-KQLSQLRYLHLSNCNMLQSLPE 516
            +  L LS NH   L       L  L+ L L   N L+S+P+
Sbjct: 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDT-NQLKSVPD 388

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 77.5 bits (191), Expect = 5e-15
 Identities = 77/405 (19%), Positives = 135/405 (33%), Gaps = 49/405 (12%)

Query: 100 LNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLD--QGLRYLPEELRYL 157
           ++LS      L+   F  + +L+FLK               +  +  +GL      L  L
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQT------PGLVIRNNTFRGLS----SLIIL 84

Query: 158 HWHQYSLKTLPLN-FDP-ENLIELNLPYSNVEQIWEGKKQAF----KLKFIDLHHSQYLT 211
                    L    F+   NL  L L               F     L+ + L  +  + 
Sbjct: 85  KLDYNQFLQLETGAFNGLANLEVLTL-TQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IK 142

Query: 212 KIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIA 271
           KI       N+ R ++L+ T     S   ++  N           L      +   +   
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF---TLLRLSSITLQDMNEYW 199

Query: 272 VDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIEC----LTNLETLDLSFCKRLKRV 327
           + +  C N    P  + +I  L L     +E  +         T +++L LS        
Sbjct: 200 LGWEKCGN----PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY----- 250

Query: 328 STSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSI-EYLEGLRK 386
                   S          N  TF  +  +   +   DL ++ I  L  S+  +   L +
Sbjct: 251 ----NMGSSFGHTNFKDPDNF-TFKGL--EASGVKTCDLSKSKIFALLKSVFSHFTDLEQ 303

Query: 387 LDLGDCSELASLPEK-LENLKSLKYLNAEFSAIGQLPSSI-SDLNQLKKLKFSGCRGLVL 444
           L L   +E+  + +     L  L  LN   + +G + S +  +L++L+ L  S      L
Sbjct: 304 LTLAQ-NEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRAL 362

Query: 445 PP-LLSGLSSLTELHLTDCNITEIPADI-GSLSSIVWLALSGNHF 487
                 GL +L EL L    +  +P  I   L+S+  + L  N +
Sbjct: 363 GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 46/308 (14%), Positives = 98/308 (31%), Gaps = 48/308 (15%)

Query: 272 VDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPS-SIECLTNLETLDLSFCKRLKRVSTS 330
               +   L + P +  ++  + L    I E+   S   L +L+ L +        +  +
Sbjct: 15  AICINR-GLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN 73

Query: 331 IC-KLKSLCWLELGGCSNLETFPE-ILEKMEHLLEIDLRETAIRN--LPSSI-EYLEGLR 385
               L SL  L+L   +            + +L  + L +  +    L  +  + L  L 
Sbjct: 74  TFRGLSSLIILKLDY-NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132

Query: 386 KLDLGDCSELASLPEK--LENLKSLKYLNAEFSAIGQLPSSISD--------LNQLKKLK 435
            L L D + +  +       N++    L+  F+ +  +              L +L  + 
Sbjct: 133 MLVLRD-NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191

Query: 436 FSGCRGLVLPPLLSG----LSSLTELHLTDCNITEIPADI--------------GSLSSI 477
                   L     G     +S+T L L+     E  A                 S S  
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251

Query: 478 VWLALSGNHFERLPTSV---KQLSQLRYLHLSNCNMLQSLPE-LPIYLVYLE----AKNC 529
           +  +    +F+          + S ++   LS  + + +L + +  +   LE    A+N 
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK-SKIFALLKSVFSHFTDLEQLTLAQN- 309

Query: 530 KRLQTLPE 537
             +  + +
Sbjct: 310 -EINKIDD 316

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 82.2 bits (202), Expect = 4e-16
 Identities = 99/572 (17%), Positives = 181/572 (31%), Gaps = 174/572 (30%)

Query: 158 HWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTK----- 212
           H H +      ++F+     E    Y ++  ++E    AF   F D    Q + K     
Sbjct: 2   HHHHH------MDFE---TGEHQYQYKDILSVFE---DAFVDNF-DCKDVQDMPKSILSK 48

Query: 213 --IPDLVETPN-LERINLLNCTNLPYISSSIQNF------NNLSVLSLAGCRSLVSFPRN 263
             I  ++ + + +     L  T L      +Q F       N   L       + +  R 
Sbjct: 49  EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM----SPIKTEQRQ 104

Query: 264 IYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWN----------TRIEEVPSSIECLTNL 313
               S +   + +  +              RL+N          +R++      + L  L
Sbjct: 105 ---PSMMTRMYIEQRD--------------RLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 314 E----------------TLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEK 357
                             + L  C   K       K+    WL L  C++ ET  E+L+K
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF---WLNLKNCNSPETVLEMLQK 204

Query: 358 MEHLLEIDL--RETAIRNLPSSIEYLEG-LRKLDLGDCSELASLPEK-----LENLKSLK 409
           + + ++ +   R     N+   I  ++  LR+L       L S P +     L N+++ K
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-------LKSKPYENCLLVLLNVQNAK 257

Query: 410 YLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVL---PPLLSGLSSLTELHLT--DCNI 464
             NA F           +L          C+ L+      +   LS+ T  H++    ++
Sbjct: 258 AWNA-F-----------NL---------SCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 465 TEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQL-----------------RYLHLSN 507
           T  P ++ SL    +L       + LP  V   +                    + H+ N
Sbjct: 297 TLTPDEVKSLLL-KYLDCR---PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV-N 351

Query: 508 CNMLQSLPELPI-YLVYLEAKNC-KRLQTLPE---IPSSV-----------------EEL 545
           C+ L ++ E  +  L   E +    RL   P    IP+ +                  +L
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411

Query: 546 -DASMLE-SIYEHSSGIMDGILFFDFTNCLKLNEKEAHKKILADSQQRIQHMASASLRLC 603
              S++E    E +  I    ++ +       NE   H+ I+ D     +   S  L   
Sbjct: 412 HKYSLVEKQPKESTISIPS--IYLELK-VKLENEYALHRSIV-DHYNIPKTFDSDDLIPP 467

Query: 604 YE---MVHYTPYGLCNCFPG---SEIPDWFSN 629
           Y       +  + L N       +     F +
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 79.9 bits (196), Expect = 2e-15
 Identities = 92/646 (14%), Positives = 194/646 (30%), Gaps = 164/646 (25%)

Query: 9   LKGEDKDYVTKIQDDPNFAHYCLSVLVDKSLVTISCNNKVQ--MHDLLQK-----MGREI 61
           L  E+ D++   +D  +        L+ K          VQ  + ++L+      M    
Sbjct: 46  LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ------EEMVQKFVEEVLRINYKFLMSP-- 97

Query: 62  VRQESVKEPG--------KRSRLWHYEDV---YHVLKKNKGTDAIEGILLNLSKTRDIHL 110
           ++ E  ++P         +R RL++   V   Y+V +       +   LL L   +++ +
Sbjct: 98  IKTEQ-RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP-YLKLRQALLELRPAKNVLI 155

Query: 111 DG------NVFVNMSNLRFLKFYMPEYKGVPIMSSKVH-LDQGLRYLPEELRYLHWHQYS 163
           DG                  K           M  K+  L+      PE +  +      
Sbjct: 156 DGVLGSGKTWVALDV-CLSYKV-------QCKMDFKIFWLNLKNCNSPETVLEM------ 201

Query: 164 LKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLE 223
           L+ L    DP N    +   SN++      +   +       +   L  +   V+     
Sbjct: 202 LQKLLYQIDP-NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLNVQNAKA- 258

Query: 224 RINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLV-SFPRNIYFRSPIAVDFSDCVNLTE 282
                              FN         C+ L+ +  + +      A      ++   
Sbjct: 259 ----------------WNAFNL-------SCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 283 FPLVSGNIIEL-RLW-NTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWL 340
             L    +  L   + + R +++P  +   TN     LS      R    +    +  W 
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREV-LTTNP--RRLSIIAESIRDG--LATWDN--WK 348

Query: 341 ELGGCSNLETFPEILEK-MEHLLEIDLRET----AI----RNLPSSIEYLEGL-RKLDLG 390
            +    N +    I+E  +  L   + R+     ++     ++P+ +  L  +   +   
Sbjct: 349 HV----NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL--LSLIWFDVIKS 402

Query: 391 DCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSG 450
           D   +     KL     ++    E +       SI  +    K+K               
Sbjct: 403 DVMVVV---NKLHKYSLVEKQPKEST------ISIPSIYLELKVK--------------- 438

Query: 451 LSSLTELH--LTDC-NITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSN 507
           L +   LH  + D  NI +                  +            S + + HL N
Sbjct: 439 LENEYALHRSIVDHYNIPK--------------TFDSDDLIPPYLDQYFYSHIGH-HLKN 483

Query: 508 CNMLQSLPELP-IYLVY--LEAKNCKRLQTLPEIPSSVEEL--DASMLES-IYEHS---S 558
               + +     ++L +  LE K  +   T      S+          +  I ++     
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQK-IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542

Query: 559 GIMDGILFF-----------DFTNCLKLNEKEAHKKILADSQQRIQ 593
            +++ IL F            +T+ L++      + I  ++ +++Q
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 81.5 bits (201), Expect = 4e-16
 Identities = 60/344 (17%), Positives = 113/344 (32%), Gaps = 45/344 (13%)

Query: 224 RINLLNCTNLPYISSSIQNFNNLSVLSLAGCR-----SLVSFPRNIYFRSPIAVDFSDCV 278
           ++ + NC  +   ++ I+ F  +  + L G       +LV      Y    I    S   
Sbjct: 47  KVFIGNCYAVS-PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT 105

Query: 279 NLTEFPLVSGNIIELRLWNTRI--EEVPSSIECLTNLETLDLSFCKRL--KRVSTSICKL 334
            L           E+RL    +  + +    +   N + L LS C+      ++      
Sbjct: 106 WLE----------EIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC 155

Query: 335 KSLCWLELGGCSN----LETFPEILEKMEHLLEIDLRETAIRNLPSSIEYL----EGLRK 386
           ++L  L+L                 +    L+ +++   A     S++E L      L+ 
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215

Query: 387 LDLGDCSELASLPEKLENLKSLKYLN-------AEFSAIGQLPSSISDLNQLKKLKFSGC 439
           L L     L  L   L+    L+ L                L  ++S   +L+ L  SG 
Sbjct: 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL--SGF 273

Query: 440 RGLV---LPPLLSGLSSLTELHLTDCNIT--EIPADIGSLSSIVWLALSGN-HFERLPTS 493
              V   LP + S  S LT L+L+   +   ++   +     +  L +        L   
Sbjct: 274 WDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVL 333

Query: 494 VKQLSQLRYLHLSNCNMLQSLPELPIYLVYLE--AKNCKRLQTL 535
                 LR L +         P + +    L   +  C +L+++
Sbjct: 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 78.8 bits (194), Expect = 2e-15
 Identities = 61/375 (16%), Positives = 122/375 (32%), Gaps = 52/375 (13%)

Query: 175 NLIELNLPYSNVEQIWEGKKQAFKLKFIDLHH---SQYLTKIPD-----LVET-PNLERI 225
           NL EL+L  S+V+ +       F   +  L     S   +++       LV   PNL+ +
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216

Query: 226 NLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPL 285
            L     L  +++ +Q    L  L   G  + V         S ++V  S C  L     
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPD----VYSGLSVALSGCKELRCL-- 270

Query: 286 VSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRL-KRVSTSICKLKSLCWLELGG 344
                     W+     +P+     + L TL+LS+       +   +C+   L  L +  
Sbjct: 271 -------SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD 323

Query: 345 CSNLETFPEILEKMEHLLEIDLRETAIRNLPSSI-----------EYLEGLRKLDLGDC- 392
                    +    + L E+ +  +    +  ++                L  +      
Sbjct: 324 YIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ 383

Query: 393 ---SELASLPEKLENLKSLKYLNAEFSAIGQLPSSISD---------LNQLKKLKFSGCR 440
              + L ++     N+   +    E  A   L     D            L++L  SG  
Sbjct: 384 MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLL 443

Query: 441 G-LVLPPLLSGLSSLTELHLTDCNITE--IPADIGSLSSIVWLALSGNHF--ERLPTSVK 495
              V   + +    +  L +     ++  +   +    S+  L +    F  + L  +  
Sbjct: 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANAS 503

Query: 496 QLSQLRYLHLSNCNM 510
           +L  +R L +S+C++
Sbjct: 504 KLETMRSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 74.5 bits (183), Expect = 6e-14
 Identities = 58/373 (15%), Positives = 113/373 (30%), Gaps = 73/373 (19%)

Query: 220 PNLERINLLNCTNLPY--ISSSIQNFNNLSVLSLAGC-------RSLVSFPRNIYFRSPI 270
            N + + L +C       +++      NL  L L            L  FP    + S +
Sbjct: 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT--YTSLV 187

Query: 271 AVDFSDCVNLTEFPLV------SGNIIELRLWNTR-IEEVPSSIECLTNLETLDLSFCKR 323
           +++ S   +   F  +        N+  L+L     +E++ + ++    LE L       
Sbjct: 188 SLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA 247

Query: 324 ------LKRVSTSICKLKSLCWLELGGCSNL--ETFPEILEKMEHLLEIDLRETAIRN-- 373
                    +S ++   K L    L G  +      P +      L  ++L    +++  
Sbjct: 248 EVRPDVYSGLSVALSGCKEL--RCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD 305

Query: 374 LPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLP--SSISD---- 427
           L   +     L++L + D  E A L       K L+ L    S    +    ++++    
Sbjct: 306 LVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365

Query: 428 -----LNQLKKLKFSGCRGL---VLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVW 479
                  +L+ +    CR +    L  +     ++T   L                 I +
Sbjct: 366 SVSMGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF 424

Query: 480 LALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLE-------------- 525
            A+           V+    LR L LS     +    +  Y   +E              
Sbjct: 425 GAI-----------VEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473

Query: 526 ---AKNCKRLQTL 535
                 C  L+ L
Sbjct: 474 HHVLSGCDSLRKL 486

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 73.0 bits (179), Expect = 2e-13
 Identities = 64/352 (18%), Positives = 116/352 (32%), Gaps = 55/352 (15%)

Query: 220 PNLERINLLNCT----NLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFS 275
             LE I L         L  I+   ++F N  VL L+ C    +          +A   +
Sbjct: 105 TWLEEIRLKRMVVTDDCLELIA---KSFKNFKVLVLSSCEGFST--------DGLAAIAA 153

Query: 276 DCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKR------LKRVST 329
            C NL E      ++ E  + +     +    +  T+L +L++S          L+R+ T
Sbjct: 154 TCRNLKEL-----DLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208

Query: 330 SICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDL-------RETAIRNLPSSIEYLE 382
               LKS   L+L     LE    +L++   L E+         R      L  ++   +
Sbjct: 209 RCPNLKS---LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCK 265

Query: 383 GLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIG--QLPSSISDLNQLKKLKFSGCR 440
            LR L     +  A LP        L  LN  ++ +    L   +    +L++L      
Sbjct: 266 ELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI 325

Query: 441 GLV-LPPLLSGLSSLTELHLTDCNITEIPADIG-SLSSIVWLALSGNHFERLPTSVKQLS 498
               L  L S    L EL +       +  ++  +   +V +++     E +    +Q++
Sbjct: 326 EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT 385

Query: 499 ------------QLRYLHLSNCNMLQSLPELPIYL---VYLEAKNCKRLQTL 535
                        +    L               L        ++CK L+ L
Sbjct: 386 NAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL 437

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.1 bits (193), Expect = 5e-16
 Identities = 53/229 (23%), Positives = 86/229 (37%), Gaps = 34/229 (14%)

Query: 296 WNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPE-I 354
                 ++P ++    + + LDLSF       S S      L  L+L  C  ++T  +  
Sbjct: 15  MELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGA 71

Query: 355 LEKMEHLLEIDLRETAIRNLPSSI-EYLEGLRKLDLGDCSELASLPEKL-ENLKSLKYLN 412
            + + HL  + L    I++L       L  L+KL   +   LASL      +LK+LK LN
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELN 130

Query: 413 AEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADI- 471
                   +       N ++  K             S L++L  L L+   I  I     
Sbjct: 131 --------V-----AHNLIQSFKLPE--------YFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 472 GSLSSIVW----LALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPE 516
             L  +      L LS N    +     +  +L+ L L   N L+S+P+
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDT-NQLKSVPD 217

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 45/221 (20%), Positives = 87/221 (39%), Gaps = 18/221 (8%)

Query: 279 NLTEFPL-VSGNIIELRLWNTRIEEVPSSI-ECLTNLETLDLSFCKRLKRVSTSIC-KLK 335
           N  + P  +  +   L L    +  + S        L+ LDLS C+ ++ +       L 
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLS 76

Query: 336 SLCWLELGGCSN-LETFP-EILEKMEHLLEIDLRETAIRNLPSSI-EYLEGLRKLDLGDC 392
            L  L L G  N +++        +  L ++   ET + +L +    +L+ L++L++   
Sbjct: 77  HLSTLILTG--NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH- 133

Query: 393 SELASLPEK--LENLKSLKYLNAEFSAIGQLPSSI-SDLNQLK----KLKFSGCRGLVLP 445
           + + S        NL +L++L+   + I  +  +    L+Q+      L  S      + 
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 446 PLLSGLSSLTELHLTDCNITEIPADI-GSLSSIVWLALSGN 485
           P       L EL L    +  +P  I   L+S+  + L  N
Sbjct: 194 PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 78.4 bits (193), Expect = 3e-15
 Identities = 52/344 (15%), Positives = 113/344 (32%), Gaps = 32/344 (9%)

Query: 217 VETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSD 276
           +++   E + +  C          + F NL  L L G      F             +  
Sbjct: 47  IDSETREHVTMALCYT-ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVT 105

Query: 277 CVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKL-- 334
            ++     L S +   + + +  ++ +  +     +LETL L  C      +  +  +  
Sbjct: 106 EISNNLRQLKSVHFRRMIVSDLDLDRLAKA--RADDLETLKLDKCSGFT--TDGLLSIVT 161

Query: 335 --KSLCWLELGGCSNLE----TFPEILEKMEHLLEIDLRETAIRNL-PSSIEYL----EG 383
             + +  L +   S  E       E+ +    L  ++   T    + P  +E +      
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221

Query: 384 LRKLDLGDCS--ELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRG 441
           L  + +GD    EL    +   NL+     +   +    +P    +L   +KL   G   
Sbjct: 222 LVSVKVGDFEILELVGFFKAAANLEEFCGGS--LNEDIGMPEKYMNLVFPRKLCRLGLSY 279

Query: 442 LV---LPPLLSGLSSLTELHLTDCNIT--EIPADIGSLSSIVWLALSGNHFER-LPTSVK 495
           +    +P L    + + +L L    +   +    I    ++  L       +R L    +
Sbjct: 280 MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ 339

Query: 496 QLSQLRYLHLSNCNMLQSLPELPIYL----VYLEAKNCKRLQTL 535
              QL+ L +      Q + +    +    +   A+ C+ L+ +
Sbjct: 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 71.9 bits (176), Expect = 4e-13
 Identities = 54/408 (13%), Positives = 115/408 (28%), Gaps = 102/408 (25%)

Query: 198 KLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSL 257
            L  + +   + L  +       NLE     +      +     N      L   G   +
Sbjct: 221 SLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM 280

Query: 258 VSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRI--EEVPSSIECLTNLET 315
                     + + + F     +           +L L    +  E+  + I+   NLE 
Sbjct: 281 G--------PNEMPILFPFAAQIR----------KLDLLYALLETEDHCTLIQKCPNLEV 322

Query: 316 LDLSFC---KRLKRVSTSICKLKSLCWLELGGCSNL------------ETFPEILEKMEH 360
           L+       + L+ ++    +LK L    +   ++                  + +  + 
Sbjct: 323 LETRNVIGDRGLEVLAQYCKQLKRLR---IERGADEQGMEDEEGLVSQRGLIALAQGCQE 379

Query: 361 LLEIDLRET-----AIRNLPSSIEYLEGLRKLDLGDCSELASLPEK------LENLKSLK 409
           L  + +  +     ++ ++ + ++ L   R + L     +  LP        L   K L+
Sbjct: 380 LEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR 439

Query: 410 YLN----------AEFSAIGQLPSSISDLNQLKKLKFSGCR----GLVLPPLLSGLSSLT 455
                           S IGQ          ++ +          GL+      G  +L 
Sbjct: 440 RFAFYLRQGGLTDLGLSYIGQY------SPNVRWMLLGYVGESDEGLM--EFSRGCPNLQ 491

Query: 456 ELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLP 515
           +L +  C  +E         +I                  +L  LRYL +       +  
Sbjct: 492 KLEMRGCCFSE--------RAIAAAV-------------TKLPSLRYLWVQGYRASMTGQ 530

Query: 516 ELPIYLVYLEAKNCKRLQTL-----PEIPSSVEELDASMLESIYEHSS 558
           +L        A+    ++ +     PE+    E  +      I  + S
Sbjct: 531 DL-----MQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILAYYS 573

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.6 bits (118), Expect = 3e-06
 Identities = 46/296 (15%), Positives = 84/296 (28%), Gaps = 41/296 (13%)

Query: 292 ELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETF 351
            + +                NL +L L    R    +     L    W    G       
Sbjct: 54  HVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFN-----LIPENW----GGYVTPWV 104

Query: 352 PEILEKMEHLLEIDLRETAIRNLPSSIEYL-----EGLRKLDLGDCSEL--ASLPEKLEN 404
            EI   +  L  +  R   + +    ++ L     + L  L L  CS      L   + +
Sbjct: 105 TEISNNLRQLKSVHFRRMIVSD--LDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTH 162

Query: 405 LKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNI 464
            + +K L  E S+  +                    G  L  L    +SL  L+      
Sbjct: 163 CRKIKTLLMEESSFSEK------------------DGKWLHELAQHNTSLEVLNFYMTEF 204

Query: 465 TEI-PADIGSL----SSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPI 519
            +I P D+ ++     S+V + +       L    K  + L      + N    +PE  +
Sbjct: 205 AKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYM 264

Query: 520 YLVYLEAKNCKRLQTLPEIPSSVEELDASMLESIYEHSSGIMDGILFFDFTNCLKL 575
            LV+        L  +      +    A+ +  +    + +           C  L
Sbjct: 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.8 bits (182), Expect = 3e-15
 Identities = 26/199 (13%), Positives = 57/199 (28%), Gaps = 31/199 (15%)

Query: 289 NIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNL 348
             +   L  +    +  +   + +L  + L+              +  L           
Sbjct: 24  AYLNGLLGQSSTANI--TEAQMNSLTYITLANIN-----------VTDL----------- 59

Query: 349 ETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSL 408
                 +E   ++ ++ +      N  + I  L  L +L +      +     L  L SL
Sbjct: 60  ----TGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114

Query: 409 KYLNAEFSAIGQL-PSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEI 467
             L+   SA      + I+ L ++  +  S    +     L  L  L  L++    + + 
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY 174

Query: 468 PADIGSLSSIVWLALSGNH 486
              I     +  L      
Sbjct: 175 RG-IEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 9/166 (5%)

Query: 346 SNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENL 405
            +    P      +  L   L +++  N+  +   +  L  + L +   +  L   +E  
Sbjct: 12  QDNVNIP--DSTFKAYLNGLLGQSSTANI--TEAQMNSLTYITLANI-NVTDL-TGIEYA 65

Query: 406 KSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCR-GLVLPPLLSGLSSLTELHLTDCNI 464
            ++K L           + IS L+ L++L+  G        P LSGL+SLT L ++    
Sbjct: 66  HNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

Query: 465 TEIPAD-IGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCN 509
            +     I +L  +  + LS N        +K L +L+ L++    
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 37/218 (16%), Positives = 71/218 (32%), Gaps = 29/218 (13%)

Query: 202 IDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFP 261
             L  SQ    IPD       +             + +    N+L+ ++LA         
Sbjct: 6   TGLKASQDNVNIPD----STFKAYLNGLLGQSSTANITEAQMNSLTYITLANI------- 54

Query: 262 RNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFC 321
                      + +D   +        NI +L + N       + I  L+NLE L +   
Sbjct: 55  -----------NVTDLTGIEYAH----NIKDLTINNIHATNY-NPISGLSNLERLRIMGK 98

Query: 322 KRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYL 381
                   ++  L SL  L++   ++ ++    +  +  +  IDL           ++ L
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTL 158

Query: 382 EGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIG 419
             L+ L++     +      +E+   L  L A    IG
Sbjct: 159 PELKSLNIQFD-GVHDY-RGIEDFPKLNQLYAFSQTIG 194

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 78.3 bits (192), Expect = 4e-15
 Identities = 49/313 (15%), Positives = 94/313 (30%), Gaps = 35/313 (11%)

Query: 223 ERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTE 282
               L   + +  +   +              R+  S        +    D         
Sbjct: 261 FSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRV 320

Query: 283 FPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLEL 342
               S +  E  L   R E           L   +LS  ++   + + +   K L  LE 
Sbjct: 321 IWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSV-EKSTVLQSELESCKELQELEP 379

Query: 343 GGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKL 402
                L T   ++  ++ LL              +++Y   L+ +D              
Sbjct: 380 ENKWCLLTIILLMRALDPLL----------YEKETLQYFSTLKAVD-------------- 415

Query: 403 ENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDC 462
             +++    +     + +      +   ++ L  +    L +   L  L  +T L L+  
Sbjct: 416 -PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCHLEQLLLVTHLDLSHN 473

Query: 463 NITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLV 522
            +  +P  + +L  +  L  S N  E +   V  L +L+ L L N N LQ    +     
Sbjct: 474 RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN-NRLQQSAAI----- 526

Query: 523 YLEAKNCKRLQTL 535
                +C RL  L
Sbjct: 527 -QPLVSCPRLVLL 538

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.2 bits (145), Expect = 2e-09
 Identities = 49/364 (13%), Positives = 105/364 (28%), Gaps = 33/364 (9%)

Query: 117 NMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENL 176
           + S   + ++ +   +   ++       +         R L         L +  +    
Sbjct: 225 DQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLS 284

Query: 177 IELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYI 236
           +E   P                L    L+          +    + ++  +L        
Sbjct: 285 VEWRTPDGRNRPSH---VWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW 341

Query: 237 SSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSG-NIIELRL 295
                    L    L       S  ++   +S +      C  L E    +   ++ + L
Sbjct: 342 CRDSATDEQLFRCEL-------SVEKSTVLQSEL----ESCKELQELEPENKWCLLTIIL 390

Query: 296 WNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEIL 355
               ++ +    E L    TL      R   +     K              L     + 
Sbjct: 391 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK-------------FLLENSVLK 437

Query: 356 EKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEF 415
            +   +  + L    +  L   +E L  +  LDL     L +LP  L  L+ L+ L A  
Sbjct: 438 MEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASD 495

Query: 416 SAIGQLPSSISDLNQLKKLKFSGCRGLVLPPL--LSGLSSLTELHLTDCNITEIPADIGS 473
           +A+  +   +++L +L++L     R      +  L     L  L+L   ++ +       
Sbjct: 496 NALENVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 554

Query: 474 LSSI 477
           L+ +
Sbjct: 555 LAEM 558

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 35/218 (16%), Positives = 78/218 (35%), Gaps = 35/218 (16%)

Query: 292 ELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETF 351
           E     T I +V      L N    +L     +  + +                      
Sbjct: 1   ESIQRPTPINQV-FPDPGLANAVKQNLGKQS-VTDLVS---------------------- 36

Query: 352 PEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYL 411
               +++  +   +   + I++L + +++   L++L L    +++ L   L++L  L+ L
Sbjct: 37  ---QKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHN-QISDL-SPLKDLTKLEEL 90

Query: 412 NAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADI 471
           +   + +  L + I     L +L            L   L +L  L + +  +  I   +
Sbjct: 91  SVNRNRLKNL-NGIPSAC-LSRLFLDNNELRDTDSL-IHLKNLEILSIRNNKLKSIVM-L 146

Query: 472 GSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCN 509
           G LS +  L L GN        + +L ++ ++ L+   
Sbjct: 147 GFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 46/269 (17%), Positives = 88/269 (32%), Gaps = 66/269 (24%)

Query: 174 ENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNC--T 231
            N ++ NL   +V  +   +K+   ++  +  +S  +  +  +    NL+ ++L +   +
Sbjct: 19  ANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSN-IQSLAGMQFFTNLKELHLSHNQIS 76

Query: 232 NLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEF-PLVSGNI 290
           +L    S +++   L  LS+   R                        L     + S  +
Sbjct: 77  DL----SPLKDLTKLEELSVNRNR------------------------LKNLNGIPSACL 108

Query: 291 IELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLET 350
             L L N  + +   S+  L NLE L +              KLKS+             
Sbjct: 109 SRLFLDNNELRDT-DSLIHLKNLEILSIRN-----------NKLKSI------------- 143

Query: 351 FPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKY 410
              +L  +  L  +DL    I N    +  L+ +  +DL       + P  ++    L  
Sbjct: 144 --VMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK-CVNEP--VKYQPELYI 197

Query: 411 LNAEFSAIGQL--PSSISDLNQLKKLKFS 437
            N      G+   P  IS+          
Sbjct: 198 TNTVKDPDGRWISPYYISNGGSYVDGCVL 226

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.3 bits (172), Expect = 6e-13
 Identities = 37/178 (20%), Positives = 73/178 (41%), Gaps = 14/178 (7%)

Query: 363 EIDLRETAIRNLPSSI--EYLEGLRKLDLGDCSELASLPEK-LENLKSLKYLNAEFSAIG 419
            +DL    +  L +      L  L  L L     L  +  +    + +L+YL+   + + 
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLH 101

Query: 420 QLPSSI-SDLNQLKKLKFSGCRGLVLPP-LLSGLSSLTELHLTDCNITEIPADI----GS 473
            L   + SDL  L+ L       +V+       ++ L +L+L+   I+  P ++      
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK 161

Query: 474 LSSIVWLALSGNHFERLPTSV-KQLSQL--RYLHLSNCNMLQSLPELPIYLVYLEAKN 528
           L  ++ L LS N  ++LP +  ++L       L+L N N L+   +L     + + + 
Sbjct: 162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN-NPLECDCKLYQLFSHWQYRQ 218

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.9 bits (158), Expect = 3e-11
 Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 14/126 (11%)

Query: 421 LPSSISDLNQLKKLKFSGCRGLVLPP--LLSGLSSLTELHLTDCNITEIPADI-GSLSSI 477
           +P S+   +    L  S      L      + L++L  L L+  ++  I ++    + ++
Sbjct: 33  VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90

Query: 478 VWLALSGNHFERLPTSV-KQLSQLRYLHLSNCNMLQSLPE-----LPIYLVYLEAKNCKR 531
            +L LS NH   L   +   L  L  L L N N +  +       +   L  L      +
Sbjct: 91  RYLDLSSNHLHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMA-QLQKLYLSQN-Q 147

Query: 532 LQTLPE 537
           +   P 
Sbjct: 148 ISRFPV 153

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 36/184 (19%), Positives = 57/184 (30%), Gaps = 36/184 (19%)

Query: 206 HSQYLTKIPDLVETPNLERINLLNCTNLPYISSSI--QNFNNLSVLSLAGCRSLVSFPRN 263
             Q L  +P  +       ++L +  NL  + +        NL  L L+    L      
Sbjct: 26  SKQQLPNVPQSLP-SYTALLDL-SHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSE 82

Query: 264 IYFRSPIAVDFSDCVNLTEFPLVSGNII---------------ELRLWNTRIEEVPSSI- 307
                     F    NL    L S N +                L L+N  I  V  +  
Sbjct: 83  A---------FVPVPNLRYLDL-SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF 132

Query: 308 ECLTNLETLDLSFCKRLKRVS----TSICKLKSLCWLELGGCSNLETFPEILEKMEHLLE 363
           E +  L+ L LS   ++ R          KL  L  L+L      +     L+K+   ++
Sbjct: 133 EDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

Query: 364 IDLR 367
             L 
Sbjct: 192 NGLY 195

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.6 bits (165), Expect = 3e-12
 Identities = 44/215 (20%), Positives = 69/215 (32%), Gaps = 20/215 (9%)

Query: 310 LTNLETLDLSFCKRLKRVSTSI--CKLKSLCWLELGGCSNLETFPEILE----KMEHLLE 363
           ++ L+ L L   +        +       L  L L   S       + E        L  
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 364 IDLRETAIRNLP-SSIEYLEGLRKLDLGD-------CSELASLPEKLENLKSLKYLNAEF 415
           + + +    N     +     L  LDL D           A  P K   L+ L   NA  
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 416 SAI-GQLPSSISDLNQLKKLKFSGCR--GLVLPPLLSGLSSLTELHLTDCNITEIPADIG 472
               G   +  +   QL+ L  S          P     S L  L+L+   + ++P  + 
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL- 272

Query: 473 SLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSN 507
             + +  L LS N  +R P S  +L Q+  L L  
Sbjct: 273 -PAKLSVLDLSYNRLDRNP-SPDELPQVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 32/216 (14%), Positives = 61/216 (28%), Gaps = 25/216 (11%)

Query: 339 WLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEG--LRKLDLGDCSELA 396
           W     C       E+      L  +  R     +L    + ++   L++L +      +
Sbjct: 24  WSSAFNCLGAADV-ELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPS 82

Query: 397 SLPEKL------ENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSG 450
            +            L+ L   N E +     P   +    L  L             L+ 
Sbjct: 83  RILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAE 142

Query: 451 LS-----SLTELHLTDCNITEIPAD-IGSLSSIVWLALSGNHFERLPTSV-----KQLSQ 499
           L       L  L +   +      + +    ++  L LS N        +      +   
Sbjct: 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202

Query: 500 LRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTL 535
           L+ L L N   +++   +   L    A    +LQ L
Sbjct: 203 LQVLALRN-AGMETPSGVCSAL----AAARVQLQGL 233

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 53/297 (17%), Positives = 86/297 (28%), Gaps = 53/297 (17%)

Query: 269 PIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVS 328
           P      +C+   +  L  G    L     R++      +    +++L L     ++   
Sbjct: 22  PDWSSAFNCLGAADVELYGGGR-SLEYLLKRVDTEADLGQFTDIIKSLSLKRLT-VRAAR 79

Query: 329 TSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLD 388
                L     L + G S L+           L   +L  T     P        L  L+
Sbjct: 80  IPSRILFGA--LRVLGISGLQ----------ELTLENLEVTGTAPPPLLEATGPDLNILN 127

Query: 389 LGDCSELASLPEKLENL-----KSLKYLNAEFSAIGQLP-SSISDLNQLKKL-----KFS 437
           L + S  A+    L  L       LK L+   +         +     L  L        
Sbjct: 128 LRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186

Query: 438 GCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSL----SSIVWLALSGNHFERLPTS 493
           G RGL+         +L  L L +  +        +L      +  L LS N       +
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

Query: 494 VKQ--LSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEIPSSVEELDAS 548
                 SQL  L+LS    L+ +P                      +P+ +  LD S
Sbjct: 247 PSCDWPSQLNSLNLSF-TGLKQVP--------------------KGLPAKLSVLDLS 282

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.5 bits (131), Expect = 5e-08
 Identities = 41/276 (14%), Positives = 88/276 (31%), Gaps = 46/276 (16%)

Query: 212 KIPDLVETPNLERINLLNCT---NLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRS 268
           +  D++++ +L+R+ +        + + +  +   + L  L+L       + P  +   +
Sbjct: 60  QFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119

Query: 269 PIAVDFSDCVNLTE----------FPLVSGNIIELRLWNTRIEEVP-SSIECLTNLETLD 317
              ++  +  N++              +   +  L +            +     L TLD
Sbjct: 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD 179

Query: 318 LSFCKRL--KRVSTSIC--KLKSLCWLEL---GGCSNLETFPEILEKMEHLLEIDLRETA 370
           LS    L  + + +++C  K  +L  L L   G  +       +      L  +DL   +
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239

Query: 371 IRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQ 430
           +R+                             +    L  LN  F+ + Q+P  +    +
Sbjct: 240 LRDAAG----------------------APSCDWPSQLNSLNLSFTGLKQVPKGLP--AK 275

Query: 431 LKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITE 466
           L  L  S  R L   P    L  +  L L      +
Sbjct: 276 LSVLDLSYNR-LDRNPSPDELPQVGNLSLKGNPFLD 310

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.8 bits (161), Expect = 8e-12
 Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 8/158 (5%)

Query: 365 DLRETAIRNLPSSI-EYLEGLRKLDLGDCSELASLPEKL-ENLKSLKYLNAEFSAIGQLP 422
           DL+   + +LPS     L  LR L L D ++L +LP  + + LK+L+ L    + +  LP
Sbjct: 43  DLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTDNKLQALP 101

Query: 423 SSISD-LNQLKKLKFSGCRGLVLPP-LLSGLSSLTELHLTDCNITEIPADI-GSLSSIVW 479
             + D L  L +L+    +   LPP +   L+ LT L L    +  +P  +   L+S+  
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161

Query: 480 LALSGNHFERLPTSV-KQLSQLRYLHLSNCNMLQSLPE 516
           L L  N  +R+P     +L++L+ L L N N L+ +PE
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDN-NQLKRVPE 198

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 9/132 (6%)

Query: 391 DCS--ELASLPEKLENLKSLKYLNAEFSAIGQLPSSISD-LNQLKKLKFSGCRGLVLPP- 446
           DCS  +L ++P  +      K L+ + + +  LPS     L +L+ L  +  +   LP  
Sbjct: 22  DCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79

Query: 447 LLSGLSSLTELHLTDCNITEIPADI-GSLSSIVWLALSGNHFERLPTSV-KQLSQLRYLH 504
           +   L +L  L +TD  +  +P  +   L ++  L L  N  + LP  V   L++L YL 
Sbjct: 80  IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139

Query: 505 LSNCNMLQSLPE 516
           L   N LQSLP+
Sbjct: 140 LGY-NELQSLPK 150

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 50/205 (24%), Positives = 96/205 (46%), Gaps = 10/205 (4%)

Query: 287 SGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCS 346
           + N   +   + ++  +PS+I    + + LDL   K     S +  +L  L  L L   +
Sbjct: 15  NNNKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-N 71

Query: 347 NLETFPE-ILEKMEHLLEIDLRETAIRNLPSSI-EYLEGLRKLDLGDCSELASLPEKL-E 403
            L+T P  I +++++L  + + +  ++ LP  + + L  L +L L   ++L SLP ++ +
Sbjct: 72  KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFD 130

Query: 404 NLKSLKYLNAEFSAIGQLPSSISD-LNQLKKLKFSGCRGLVLPP-LLSGLSSLTELHLTD 461
           +L  L YL+  ++ +  LP  + D L  LK+L+    +   +P      L+ L  L L +
Sbjct: 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190

Query: 462 CNITEIPADI-GSLSSIVWLALSGN 485
             +  +P     SL  +  L L  N
Sbjct: 191 NQLKRVPEGAFDSLEKLKMLQLQEN 215

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.0 bits (151), Expect = 6e-11
 Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 391 DCS--ELASLPEKLENLKSLKYLNAEFSAIGQLPSSI-SDLNQLKKLKFSGCRGLVLPP- 446
           DC    L  +P  L    ++  +  E + I  +P    S   +L+++  S  +   L P 
Sbjct: 17  DCRGKGLTEIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD 74

Query: 447 LLSGLSSLTELHLTDCNITEIPADI-GSLSSIVWLALSGNHFERLPTSV-KQLSQLRYLH 504
              GL SL  L L    ITE+P  +   L S+  L L+ N    L     + L  L  L 
Sbjct: 75  AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS 134

Query: 505 LSNCNMLQSLPE 516
           L + N LQ++ +
Sbjct: 135 LYD-NKLQTIAK 145

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 6/131 (4%)

Query: 363 EIDLRETAIRNLPSSI-EYLEGLRKLDLGDCSELASLPEKL-ENLKSLKYLNAEFSAIGQ 420
           EI L +  I+ +P       + LR++DL + ++++ L     + L+SL  L    + I +
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-NQISELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 421 LPSSISD-LNQLKKLKFSGCRGLVLPP-LLSGLSSLTELHLTDCNITEIPADI-GSLSSI 477
           LP S+ + L  L+ L  +  +   L       L +L  L L D  +  I       L +I
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154

Query: 478 VWLALSGNHFE 488
             + L+ N F 
Sbjct: 155 QTMHLAQNPFI 165

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 53/282 (18%), Positives = 97/282 (34%), Gaps = 56/282 (19%)

Query: 268 SPIAVDFSDCVNLTEFPLVSG----NIIELRLWNTRIEE--VPSSIECLTNLETLDLSFC 321
           S   + F    +  + PL        +  + L N+ IE   +   +   + L+ L L   
Sbjct: 69  SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 128

Query: 322 KRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYL 381
           +    +  ++ K  +L  L L GCS                     E A++ L SS    
Sbjct: 129 RLSDPIVNTLAKNSNLVRLNLSGCSGF------------------SEFALQTLLSS---C 167

Query: 382 EGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRG 441
             L +L+L  C +           K ++   A  S              + +L  SG R 
Sbjct: 168 SRLDELNLSWCFDFTE--------KHVQVAVAHVS------------ETITQLNLSGYRK 207

Query: 442 LV----LPPLLSGLSSLTELHLTDC-NIT-EIPADIGSLSSIVWLALSGNHF--ERLPTS 493
            +    L  L+    +L  L L+D   +  +   +   L+ +  L+LS  +         
Sbjct: 208 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267

Query: 494 VKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTL 535
           + ++  L+ L +       +L  L   L +L+  NC    T+
Sbjct: 268 LGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI-NCSHFTTI 308

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 49/266 (18%), Positives = 93/266 (34%), Gaps = 48/266 (18%)

Query: 175 NLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTK-IPDLVET-PNLERINLLNCTN 232
            +I    P S ++Q        F+++ +DL +S      +  ++     L+ ++L     
Sbjct: 71  GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 130

Query: 233 LPYISSSIQNFNNLSVLSLAGCRS--------LVSFPRNIYFRSPIAVDFSDCVNLTEFP 284
              I +++   +NL  L+L+GC          L+S    +       ++ S C + TE  
Sbjct: 131 SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL-----DELNLSWCFDFTEKH 185

Query: 285 LV------SGNIIELRL--WNTRI--EEVPSSIECLTNLETLDLSFCKRLKRVS-TSICK 333
           +       S  I +L L  +   +   ++ + +    NL  LDLS    LK        +
Sbjct: 186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 245

Query: 334 LKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCS 393
           L  L  L L  C ++                      +  L      +  L+ L +    
Sbjct: 246 LNYLQHLSLSRCYDI------------------IPETLLELGE----IPTLKTLQVFGIV 283

Query: 394 ELASLPEKLENLKSLKYLNAEFSAIG 419
              +L    E L  L+   + F+ I 
Sbjct: 284 PDGTLQLLKEALPHLQINCSHFTTIA 309

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 7/124 (5%)

Query: 291 IELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLET 350
           +EL      IE++ +++  L   + L LS    ++++S S+  +++L  L LG    ++ 
Sbjct: 28  VELHGMIPPIEKMDATLSTLKACKHLALS-TNNIEKIS-SLSGMENLRILSLGRN-LIKK 84

Query: 351 FPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDC--SELASLPEKLENLKSL 408
              +    + L E+ +    I +L S IE L  LR L + +   +    + +KL  L  L
Sbjct: 85  IENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKL 142

Query: 409 KYLN 412
           + L 
Sbjct: 143 EDLL 146

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 28/161 (17%), Positives = 68/161 (42%), Gaps = 5/161 (3%)

Query: 361 LLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQ 420
            +E+      I  + +++  L+  + L L   + +  +   L  +++L+ L+   + I +
Sbjct: 27  KVELHGMIPPIEKMDATLSTLKACKHLALS-TNNIEKI-SSLSGMENLRILSLGRNLIKK 84

Query: 421 LPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIP--ADIGSLSSIV 478
           + +  +  + L++L  S  +   L   +  L +L  L++++  IT       + +L  + 
Sbjct: 85  IENLDAVADTLEELWISYNQIASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143

Query: 479 WLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPI 519
            L L+GN            S+ R   +     L+ L  +P+
Sbjct: 144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPV 184

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 10/136 (7%)

Query: 400 EKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHL 459
                 + ++ L+     I ++ +++S L   K L  S      +  L SG+ +L  L L
Sbjct: 20  VVATEAEKVE-LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSL-SGMENLRILSL 77

Query: 460 TDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPI 519
               I +I        ++  L +S N    L + +++L  LR L++SN N + +  E+  
Sbjct: 78  GRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSN-NKITNWGEI-D 134

Query: 520 YLVYLEAKNCKRLQTL 535
            L         +L+ L
Sbjct: 135 KL-----AALDKLEDL 145

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 16/161 (9%)

Query: 363 EIDLRETAIRNLPSSIEYLEGLRKLDLGDCS--ELASLP--EKLENLKSLKYLNAEFSAI 418
           + +L++ ++ +  +       L  +D    +  ++ S+   + L N++ L     +   I
Sbjct: 23  KANLKKKSVTDAVTQN----ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI 78

Query: 419 GQLPSSISDLNQLKKLKFSGCRGLVLPP-LLSGLSSLTELHLTDCNITEIPADI-GSLSS 476
             L      L  L  L  +G +   LP  +   L++L EL L +  +  +P  +   L++
Sbjct: 79  SALKE----LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134

Query: 477 IVWLALSGNHFERLPTSV-KQLSQLRYLHLSNCNMLQSLPE 516
           + +L L+ N  + LP  V  +L+ L  L L + N LQSLPE
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDL-SYNQLQSLPE 174

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 7/137 (5%)

Query: 385 RKLDLGDCSELASLPEK-LENLKSLKYLNAEFSAIGQLPSSISD-LNQLKKLKFSGCRGL 442
            KLDL   + LA+L +     L  L +LN +++ +  L + + D L +L  L  +  +  
Sbjct: 38  EKLDLQS-TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96

Query: 443 VLPPLL-SGLSSLTELHLTDCNITEIPADI-GSLSSIVWLALSGNHFERLPTSV-KQLSQ 499
            LP  +   L+ L +L+L    +  +P+ +   L+ +  L L+ N  + +P     +L+ 
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156

Query: 500 LRYLHLSNCNMLQSLPE 516
           L+ L LS  N LQS+P 
Sbjct: 157 LQTLSLST-NQLQSVPH 172

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.0 bits (133), Expect = 5e-08
 Identities = 53/275 (19%), Positives = 96/275 (34%), Gaps = 57/275 (20%)

Query: 286 VSGNIIELRLWNTRI--EEVPSSIECLTNLETLDLSFC----KRLKRVSTSICKLKSLCW 339
           +S +I  L +    +        +  L   + + L  C     R K +S+++    +L  
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 340 LELGGCS-NLETFPEILEKMEH----LLEIDLRETAI-----RNLPSSIEYLEGLRKLDL 389
           L L            +L+ ++     + ++ L+   +       L S++  L  L++L L
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 390 GDC----SELASLPEKL-ENLKSLKYLNAEFSAIG-----QLPSSISDLNQLKKLKFSG- 438
            D     + L  L E L +    L+ L  E+ ++       L S +      K+L  S  
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 439 ----------CRGLVLPPLLSGLSSLTELHLTDCNITE-----IPADIGSLSSIVWLALS 483
                     C+GL   P       L  L L  C +T      +   + S +S+  LAL 
Sbjct: 181 DINEAGVRVLCQGLKDSPC-----QLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235

Query: 484 GNHFERLPTSVKQLSQ--------LRYLHLSNCNM 510
            N        + +L          LR L +  C +
Sbjct: 236 SNKLG--DVGMAELCPGLLHPSSRLRTLWIWECGI 268

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 45/262 (17%), Positives = 77/262 (29%), Gaps = 62/262 (23%)

Query: 289 NIIELRLWNTRI-----EEVPSSIECLTNLETLDLSFCKRLKRVSTSICK-----LKSLC 338
            +  L+L +  +      ++   +    +L  L L   K        +C         L 
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259

Query: 339 WLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDC----SE 394
            L +  C                    +      +L   +   E L++L L         
Sbjct: 260 TLWIWECG-------------------ITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 395 LASLPEKL-ENLKSLKYLNAEFSAIG-----QLPSSISDLNQLKKLKFS-------GCRG 441
              L E L E    L+ L  +  +          S ++    L +L+ S       G R 
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360

Query: 442 LVLPPLLSGLSSLTELHLTDCNITEIPAD-----IGSLSSIVWLALSGNHFERLPTSVKQ 496
           L    L    S L  L L DC++++         + +  S+  L LS N        + Q
Sbjct: 361 LCQG-LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG--DAGILQ 417

Query: 497 LSQ--------LRYLHLSNCNM 510
           L +        L  L L +   
Sbjct: 418 LVESVRQPGCLLEQLVLYDIYW 439

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 31/156 (19%), Positives = 54/156 (34%), Gaps = 20/156 (12%)

Query: 369 TAI-RNLPSSIEYLEGLRKLDLGDCSELASLPEK--LENLKSLKYLNAEFSAIGQLPSSI 425
             I  ++P          +L L + +E   L      + L  L+ +N   + I  +    
Sbjct: 24  NKIPEHIPQYTA------ELRLNN-NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA 76

Query: 426 -SDLNQLKKLKFSGCRGLVLPP-LLSGLSSLTELHLTDCNITEIPADI-GSLSSIVWLAL 482
               + + ++  +  R   +   +  GL SL  L L    IT +  D    LSS+  L+L
Sbjct: 77  FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136

Query: 483 SGNHFERLPTSV-KQLSQLRYLHLSN------CNML 511
             N    +       L  L  L+L        C + 
Sbjct: 137 YDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA 172

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 1e-07
 Identities = 22/99 (22%), Positives = 31/99 (31%), Gaps = 9/99 (9%)

Query: 422 PSSISDLNQLKKLKFSGCRGL-VLPP-LLSGLSSLTELHLTDCNITEIPADIGS-LSSIV 478
              +     L +L     + L  L    L GL  L  L +    +  +  D       + 
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 479 WLALSGNHFERLPTSVKQLSQLRYLHLSN------CNML 511
            L LS N  E L     Q   L+ L LS       C + 
Sbjct: 84  RLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALR 122

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 3e-07
 Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 9/104 (8%)

Query: 391 DCSE--LASLPEKLENLKSLKYL----NAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVL 444
            C+          L   ++L  L          +      +  L +L+ L         +
Sbjct: 14  RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE--LRDLRGLGELRNLTIVKSGLRFV 71

Query: 445 PP-LLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHF 487
            P        L+ L+L+   +  +        S+  L LSGN  
Sbjct: 72  APDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 8e-04
 Identities = 24/122 (19%), Positives = 37/122 (30%), Gaps = 23/122 (18%)

Query: 226 NLLNCTNLPYISS--SIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEF 283
           + L CT    + S   +    NL+ L +   + L               D      L   
Sbjct: 11  SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELR---------DLRGLGELR-- 59

Query: 284 PLVSGNIIELRLWNTRIEEVPSSI-ECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLEL 342
                    L +  + +  V          L  L+LSF   L+ +S    +  SL  L L
Sbjct: 60  --------NLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVL 110

Query: 343 GG 344
            G
Sbjct: 111 SG 112

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 39/249 (15%), Positives = 67/249 (26%), Gaps = 51/249 (20%)

Query: 300 IEEVPSSIECLTNLETLDLSFCK----RLKRVSTSICKLKSLCWLELGGCSNLETFPEIL 355
            + V + +    +++ + LS         + +S +I   K L   E           EI 
Sbjct: 21  EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIP 80

Query: 356 EKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDC-------SELASLPEKLENLKSL 408
           E +  LL+      A+   P        L  + L D          L     K   L+ L
Sbjct: 81  EALRLLLQ------ALLKCPK-------LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 127

Query: 409 KYLNAEFSAIG-----------QLPSSISDLNQLKKLKFSGCR-----GLVLPPLLSGLS 452
              N                   +     +   L+ +     R                 
Sbjct: 128 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187

Query: 453 SLTELHLTDCNITE--IPADIGSL----SSIVWLALSGNHF-----ERLPTSVKQLSQLR 501
            L  + +    I    I   +         +  L L  N F       L  ++K    LR
Sbjct: 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247

Query: 502 YLHLSNCNM 510
            L L++C +
Sbjct: 248 ELGLNDCLL 256

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 50/333 (15%), Positives = 96/333 (28%), Gaps = 79/333 (23%)

Query: 289 NIIELRLWNTRI-----EEVPSSIECLTNLETLDLSFC----------KRLKRVSTSICK 333
           ++ E+ L    I       +  +I    +LE  + S            + L+ +  ++ K
Sbjct: 33  SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92

Query: 334 LKSLCWLELGGCS----NLETFPEILEKMEHLLEIDLRETAI--------------RNLP 375
              L  + L   +      E   + L K   L  + L    +                + 
Sbjct: 93  CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVN 152

Query: 376 SSIEYLEGLRKLDLGDC-------SELASLPEKLENLKSLKYLNAEFSAIGQ------LP 422
              +    LR +  G          E A   +  ++ + L  +    + I        L 
Sbjct: 153 KKAKNAPPLRSIICGRNRLENGSMKEWA---KTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209

Query: 423 SSISDLNQLKKLKFSGCR-----GLVLPPLLSGLSSLTELHLTDCNITEIPAD------- 470
             ++   +LK L              L   L    +L EL L DC ++   A        
Sbjct: 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269

Query: 471 IGSLSSIVWLALSGNHFER-----LPTSVKQ-LSQLRYLHLSNCNM------LQSLPELP 518
                 +  L L  N  E      L T + + +  L +L L+          +  + E+ 
Sbjct: 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV- 328

Query: 519 IYLVYLEAKNCKRLQTLPEIPSSVEELDASMLE 551
                   +    L  L ++    +E +    E
Sbjct: 329 -----FSTRGRGELDELDDMEELTDEEEEDEEE 356

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 21/194 (10%), Positives = 56/194 (28%), Gaps = 44/194 (22%)

Query: 361 LLEIDLRETAI-----RNLPSSIEYLEGLRKLDLGDCS----ELASLPEKLENLKSLKYL 411
           +    L+  AI     +++ + +   + ++++ L   +        L E + + K L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 412 NAEFSAIGQ-----------LPSSISDLNQLKKLKFSGCR-----GLVLPPLLSGLSSLT 455
                  G+           L  ++    +L  ++ S           L   LS  + L 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 456 ELHLTDCNITE--------------IPADIGSLSSIVWLALSGNHFE-----RLPTSVKQ 496
            L+L +  +                +     +   +  +    N  E         + + 
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 497 LSQLRYLHLSNCNM 510
              L  + +    +
Sbjct: 186 HRLLHTVKMVQNGI 199

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 11/128 (8%)

Query: 291 IELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLET 350
           + L    +   ++        NLE L L     L  VS ++ KL  L  LEL        
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVS-NLPKLPKLKKLELSENRIFGG 86

Query: 351 FPEILEKMEHLLEIDLRETAIRNLPSSIEYLEG---LRKLDLGDCSELASLPE----KLE 403
              + EK+ +L  ++L    ++++ S++E L+    L+ LDL +C E+ +L +      +
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDI-STLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFK 144

Query: 404 NLKSLKYL 411
            L  L YL
Sbjct: 145 LLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 13/119 (10%)

Query: 418 IGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSI 477
             + P+++ +L     L         +  L +   +L  L L +  +  + +++  L  +
Sbjct: 19  RNRTPAAVRELV----LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKL 73

Query: 478 VWLALSGNHFERL-PTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTL 535
             L LS N          ++L  L +L+LS  N L+ +  L   L     K  + L++L
Sbjct: 74  KKLELSENRIFGGLDMLAEKLPNLTHLNLSG-NKLKDISTL-EPL-----KKLECLKSL 125

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 5/110 (4%)

Query: 402 LENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTD 461
              ++ L  L+   S  G++    ++   L+ L       + +  L   L  L +L L++
Sbjct: 23  PAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNL-PKLPKLKKLELSE 80

Query: 462 CNITEIPADIG-SLSSIVWLALSGNHFERLPT--SVKQLSQLRYLHLSNC 508
             I      +   L ++  L LSGN  + + T   +K+L  L+ L L NC
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 8/131 (6%)

Query: 391 DCSE--LASLPEKLENLKSLKYLNAEFSAIGQLPSSISD-LNQLKKLKFSGCRGLVLPP- 446
           DC     AS+P  +    + + L    + I +L   + D L  LK+L     +   LP  
Sbjct: 25  DCRSKRHASVPAGIPT--NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG 82

Query: 447 LLSGLSSLTELHLTDCNITEIPADI-GSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHL 505
           +   L+ LT L L    +T +P+ +   L  +  L +  N    LP  +++L+ L +L L
Sbjct: 83  VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLAL 142

Query: 506 SNCNMLQSLPE 516
              N L+S+P 
Sbjct: 143 DQ-NQLKSIPH 152

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 455 TELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSV-KQLSQLRYLHLSNCNMLQS 513
           TEL+L     T +P ++ +   +  + LS N    L       ++QL  L LS  N L+ 
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NRLRC 92

Query: 514 LPE 516
           +P 
Sbjct: 93  IPP 95

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 444 LPPLLSGLSSLTELHLTDCNITEIPADI-GSLSSIVWLALSGNHFERLPTSV-KQLSQLR 501
           +P  LS    LT + L++  I+ +      +++ ++ L LS N    +P      L  LR
Sbjct: 46  VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105

Query: 502 YLHLSNCNMLQSLPE 516
            L L   N +  +PE
Sbjct: 106 LLSLHG-NDISVVPE 119

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 13/134 (9%)

Query: 391 DCSE--LASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLL 448
           +C      S+P  +       YL+ E +++  LP+ + D  +L  L      G  L  L 
Sbjct: 13  ECYSQGRTSVPTGIPA--QTTYLDLETNSLKSLPNGVFD--ELTSLTQLYLGGNKLQSLP 68

Query: 449 SG----LSSLTELHLTDCNITEIPADI-GSLSSIVWLALSGNHFERLPTSV-KQLSQLRY 502
           +G    L+SLT L+L+   +  +P  +   L+ +  LAL+ N  + LP  V  +L+QL+ 
Sbjct: 69  NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD 128

Query: 503 LHLSNCNMLQSLPE 516
           L L   N L+S+P+
Sbjct: 129 LRLYQ-NQLKSVPD 141

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.8 bits (115), Expect = 5e-06
 Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 19/157 (12%)

Query: 373 NLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLK 432
           +L   ++ +  L  L +   + L+   +   NLKSL+ ++             SDL  L+
Sbjct: 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222

Query: 433 KLKFS------GCRGLV--LPPLLSG--LSSLTELHLTDCNITEIP----ADIGSLSSIV 478
           KL         G  G +    PL S     +L  L + D     +      +   L  + 
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282

Query: 479 WLALSGNHF-----ERLPTSVKQLSQLRYLHLSNCNM 510
            + +S           L   V ++  L+++++    +
Sbjct: 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 9/114 (7%)

Query: 423 SSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLAL 482
           +  ++  + ++L   G +  V+  L + L     +  +D  I ++      L  +  L +
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLV 71

Query: 483 SGNHFERLPTSVKQ-LSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTL 535
           + N   R+   + Q L  L  L L+N N L  L +L   L      + K L  L
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTN-NSLVELGDL-DPL-----ASLKSLTYL 118

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 18/127 (14%), Positives = 45/127 (35%), Gaps = 9/127 (7%)

Query: 292 ELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETF 351
           EL L   +I  + +    L   + +D S  + ++++      L+ L  L +         
Sbjct: 23  ELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKLDG-FPLLRRLKTLLVNNNRICRIG 80

Query: 352 PEILEKMEHLLEIDLRETAIRNLPSSIEYLEG---LRKLDLGD--CSELASLPEK-LENL 405
             + + +  L E+ L   ++  L   ++ L     L  L +     +         +  +
Sbjct: 81  EGLDQALPDLTELILTNNSLVEL-GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKV 139

Query: 406 KSLKYLN 412
             ++ L+
Sbjct: 140 PQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 9/121 (7%)

Query: 353 EILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLN 412
                     E+DLR   I  + +    L+    +D  D  E+  L +    L+ LK L 
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLL 70

Query: 413 AEFSAIGQLPSSISD-LNQLKKLKFSGCR----GLVLPPLLSGLSSLTELHLTDCNITEI 467
              + I ++   +   L  L +L  +       G + P  L+ L SLT L +    +T  
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP--LASLKSLTYLCILRNPVTNK 128

Query: 468 P 468
            
Sbjct: 129 K 129

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 12/125 (9%)

Query: 293 LRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGC--SNLET 350
           ++L    IE+             LDL    ++  +      L     ++        L+ 
Sbjct: 2   VKLTAELIEQAAQ-YTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRKLDG 59

Query: 351 FPEILEKMEHLLEIDLRETAIRNLPSSI-EYLEGLRKLDLGDC--SELASLPEKLENLKS 407
           FP     +  L  + +    I  +   + + L  L +L L +    EL  L + L +LKS
Sbjct: 60  FP----LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKS 114

Query: 408 LKYLN 412
           L YL 
Sbjct: 115 LTYLC 119

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 11/112 (9%)

Query: 427 DLNQLKKLKFSGCRG--LVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSG 484
             + +K+L     R     L  L      L  L   +  +T I A++  L+ +  L LS 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSD 73

Query: 485 NHFERL-PTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTL 535
           N          ++   L +L+LS  N ++ L  +   L     K  + L++L
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSG-NKIKDLSTI-EPL-----KKLENLKSL 118

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 5/112 (4%)

Query: 400 EKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHL 459
               ++K L  L+   S  G+L     +  +L+ L      GL     L  L+ L +L L
Sbjct: 14  RTPSDVKEL-VLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLEL 71

Query: 460 TDCNITEIPADIG-SLSSIVWLALSGNHFERLPT--SVKQLSQLRYLHLSNC 508
           +D  ++     +     ++  L LSGN  + L T   +K+L  L+ L L NC
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 11/128 (8%)

Query: 291 IELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLET 350
           + L    +   ++    +    LE L       L  ++ ++ KL  L  LEL        
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIA-NLPKLNKLKKLELSDNRVSGG 79

Query: 351 FPEILEKMEHLLEIDLRETAIRNLPSSIEYLEG---LRKLDLGDCSELASLPE----KLE 403
              + EK  +L  ++L    I++L S+IE L+    L+ LDL +C E+ +L +      +
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDL-STIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFK 137

Query: 404 NLKSLKYL 411
            L  L YL
Sbjct: 138 LLPQLTYL 145

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 12/92 (13%)

Query: 427 DLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADI-GSLSSIVWLALSGN 485
           + N+L+ L            +   L+ LT+L L+   I  +P  +   L+ +  L L  N
Sbjct: 36  ESNKLQSLP---------HGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86

Query: 486 HFERLPTSV-KQLSQLRYLHLSNCNMLQSLPE 516
             + LP  V  +L+QL+ L L   N L+S+P+
Sbjct: 87  KLQSLPNGVFDKLTQLKELALDT-NQLKSVPD 117

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 452 SSLTELHLTDCNITEIPADI-GSLSSIVWLALSGNHFERLPTSV-KQLSQLRYLHLSNCN 509
           SS T L L    +  +P  +   L+ +  L+LS N  + LP  V  +L++L  L+L + N
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL-HEN 86

Query: 510 MLQSLPE 516
            LQSLP 
Sbjct: 87  KLQSLPN 93

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 37/231 (16%), Positives = 67/231 (29%), Gaps = 54/231 (23%)

Query: 306 SIECLTNLETLDLSFCKRLKRVSTSICKLKSL----CWLELGGCSNLETFPEILEKMEHL 361
            I+ L  LE       K  K     +   + L       E              E +  L
Sbjct: 21  PIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQR------FSAEVLSSL 74

Query: 362 LEIDLRETAIRNLPSSIEYL--------EGLRKLDLGDCS----ELASLPEKLENLKSLK 409
            +++L    +   P     +          L +++L  C      L +L   L      +
Sbjct: 75  RQLNLAGVRMT--PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL---LPVFLRAR 129

Query: 410 YLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPA 469
            L             +   N L       C+ L    LL     +T L L++  +T    
Sbjct: 130 KLG------------LQL-NSLGP---EACKDLR-DLLLHDQCQITTLRLSNNPLTAAGV 172

Query: 470 D-----IGSLSSIVWLALSGNHF-----ERLPTSVKQLSQLRYLHLSNCNM 510
                 +   +S+  L+L          E L   + +  QL+ L+++    
Sbjct: 173 AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	815
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-11
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.004

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.4 bits (158), Expect = 5e-12
 Identities = 47/242 (19%), Positives = 93/242 (38%), Gaps = 7/242 (2%)

Query: 279 NLTEFPL-VSGNIIELRLWNTRIEEV-PSSIECLTNLETLDLSFCKRLKRVSTSICKLKS 336
            L + P  +  +   L L N +I E+     + L NL TL L   K  K    +   L  
Sbjct: 21  GLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 80

Query: 337 LCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELA 396
           L  L L      E   ++ + ++ L   +   T +R    +      + +L         
Sbjct: 81  LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140

Query: 397 SLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCR-GLVLPPLLSGLSSLT 455
                 + +K L Y+    + I  +P  +     L +L   G +   V    L GL++L 
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 456 ELHLTDCNITEIPADIGSLSSIVW-LALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSL 514
           +L L+  +I+ +     + +  +  L L+ N   ++P  +     ++ ++L N N + ++
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN-NNISAI 257

Query: 515 PE 516
             
Sbjct: 258 GS 259

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 38/281 (13%), Positives = 79/281 (28%), Gaps = 25/281 (8%)

Query: 100 LNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHW 159
           L+L   +   +    F N+ NL  L     +   +               L  +L  L+ 
Sbjct: 36  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS--------PGAFAPLV-KLERLYL 86

Query: 160 HQYSLKTLP--LNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLV 217
            +  LK LP  +    + L       + V +          +  +  +  +         
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 218 ETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAV----D 273
           +         +  TN+  I   +    +L+ L L G +       ++   + +A      
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 274 FSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCK------RLKRV 327
            S           + ++ EL L N ++ +VP  +     ++ + L               
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 328 STSICKLKSLCWLELGG--CSNLETFPEILEKMEHLLEIDL 366
                K  S   + L        E  P     +     + L
Sbjct: 265 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 439 CRGLVLPPLLSGLS-SLTELHLTDCNITEIPA-DIGSLSSIVWLALSGNHFERL-PTSVK 495
           C  L L  +   L      L L +  ITEI   D  +L ++  L L  N   ++ P +  
Sbjct: 17  CSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA 76

Query: 496 QLSQLRYLHLSNCNMLQSLPE 516
            L +L  L+LS  N L+ LPE
Sbjct: 77  PLVKLERLYLSK-NQLKELPE 96

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 453 SLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSV-KQLSQLRYLHLSNCNML 511
            L  +  +D  + ++P D+        L L  N    +     K L  L  L L N  + 
Sbjct: 11  HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 512 QSLPELPIYLVYLE--AKNCKRLQTLPE 537
           +  P     LV LE    +  +L+ LPE
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPE 96

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.7 bits (151), Expect = 7e-11
 Identities = 58/357 (16%), Positives = 114/357 (31%), Gaps = 37/357 (10%)

Query: 172 DPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCT 231
           D + +  L      ++ I +G +    L  I+  ++Q LT I  L     L  I + N  
Sbjct: 42  DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQ 99

Query: 232 NLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNII 291
                  +                   +   +I     +       ++      +S    
Sbjct: 100 IADITPLANLTNLTG-------LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSG 152

Query: 292 ELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETF 351
              L         + ++ L NL TL+       K         K      L   +N  + 
Sbjct: 153 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISD 211

Query: 352 PEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYL 411
              L  + +L E+ L    ++++ + +  L  L  LDL +       P  L  L  L  L
Sbjct: 212 ITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 268

Query: 412 NAEFSAIGQLPSSIS---------------------DLNQLKKLKFSGCRGLVLPPLLSG 450
               + I  +                          +L  L  L         + P+ S 
Sbjct: 269 KLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV-SS 327

Query: 451 LSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSN 507
           L+ L  L   +  ++++ + + +L++I WL+   N    L   +  L+++  L L++
Sbjct: 328 LTKLQRLFFANNKVSDVSS-LANLTNINWLSAGHNQISDLT-PLANLTRITQLGLND 382

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 451 LSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNM 510
             SL EL++++  + E+PA    L     L  S NH   +P        L+ LH+     
Sbjct: 283 PPSLEELNVSNNKLIELPALPPRLER---LIASFNHLAEVPEL---PQNLKQLHVEYNP- 335

Query: 511 LQSLPELPIYLVYLEAKN 528
           L+  P++P  +  L   +
Sbjct: 336 LREFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 428 LNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHF 487
              L++L  S  + + LP L      L  L  +  ++ E+P    +L     L +  N  
Sbjct: 283 PPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPELPQNLKQ---LHVEYNPL 336

Query: 488 ERLPTSVKQLSQLR 501
              P   + +  LR
Sbjct: 337 REFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 3/69 (4%)

Query: 452 SSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNML 511
               EL L +  ++ +P     L S   L  S N    LP   + L  L   + +   + 
Sbjct: 38  RQAHELELNNLGLSSLPELPPHLES---LVASCNSLTELPELPQSLKSLLVDNNNLKALS 94

Query: 512 QSLPELPIY 520
              P L   
Sbjct: 95  DLPPLLEYL 103

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 7e-04
 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 296 WNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEIL 355
            N    E+ S  +   +LE L++S  K L  +     +L+ L        ++L   PE+ 
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNK-LIELPALPPRLERLIA----SFNHLAEVPELP 323

Query: 356 EKMEHLLEIDLRETAIRNLPSSIEYLEGLR 385
           + ++ L    +    +R  P   E +E LR
Sbjct: 324 QNLKQL---HVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 4/72 (5%)

Query: 358 MEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSA 417
              L E+++    +  LP+    LE   +L       LA +PE  +NLK L         
Sbjct: 283 PPSLEELNVSNNKLIELPALPPRLE---RLIASFNH-LAEVPELPQNLKQLHVEYNPLRE 338

Query: 418 IGQLPSSISDLN 429
              +P S+ DL 
Sbjct: 339 FPDIPESVEDLR 350

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 7e-06
 Identities = 36/203 (17%), Positives = 70/203 (34%), Gaps = 6/203 (2%)

Query: 287 SGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCS 346
             + +E+      +  +P  +    +   L LS          ++     L  L L    
Sbjct: 9   VASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 347 NLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLK 406
             +   +    +  L  +DL    +++LP   + L  L  LD+      +     L  L 
Sbjct: 67  LTKLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 407 SLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGL--VLPPLLSGLSSLTELHLTDCNI 464
            L+ L  + + +  LP  +       +        L  +   LL+GL +L  L L + ++
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 465 TEIPADIGSLSSIVWLALSGNHF 487
             IP        + +  L GN +
Sbjct: 185 YTIPKGFFGSHLLPFAFLHGNPW 207

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 5/118 (4%)

Query: 385 RKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVL 444
           R L L     L  L   LE L  + +L+   + +  LP +++ L  L+ L+ S      +
Sbjct: 1   RVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 445 PPLLSGLSSLTELHLTDCNITEIPA--DIGSLSSIVWLALSGNHFERLPTSVKQLSQL 500
             + +    L EL L +  + +  A   + S   +V L L GN   +     ++L+++
Sbjct: 59  DGVANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 7e-04
 Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 5/117 (4%)

Query: 364 IDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPS 423
           + L    +  L   +E L  +  LDL     L +LP  L  L+ L+ L A  +A+  +  
Sbjct: 3   LHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALENVDG 60

Query: 424 SISDLNQLKKLKFSGCR--GLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIV 478
             +   +L++L     R         L     L  L+L   ++ +       L+ ++
Sbjct: 61  VANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 5/122 (4%)

Query: 293 LRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFP 352
           L L +  +  +   +E L  +  LDLS   RL+ +  ++  L+ L  L+    +      
Sbjct: 3   LHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 353 EILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGD--CSELASLPEKL-ENLKSLK 409
                    L +             +     L  L+L      +   + E+L E L S+ 
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

Query: 410 YL 411
            +
Sbjct: 121 SI 122

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.8 bits (99), Expect = 1e-04
 Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 458 HLTDCNIT-EIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLP 515
            L +  I   +P  +  L  +  L +S N+          L +      +N   L   P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 41/261 (15%), Positives = 72/261 (27%), Gaps = 32/261 (12%)

Query: 219 TPNLERINLLNC--TNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSD 276
           T  +  ++L          I SS+ N   L+ L + G  +LV        +         
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 277 CVNLTEFPLVSGNIIELRL------WNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTS 330
                   +         L      +N     +P SI  L NL  +     +    +  S
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 331 ICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKL--- 387
                 L        + L           +L  +DL    +    S +   +   +    
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 388 ---------------------DLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSIS 426
                                DL +     +LP+ L  LK L  LN  F+ +        
Sbjct: 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288

Query: 427 DLNQLKKLKFSGCRGLVLPPL 447
           +L +     ++  + L   PL
Sbjct: 289 NLQRFDVSAYANNKCLCGSPL 309

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 38/270 (14%), Positives = 90/270 (33%), Gaps = 17/270 (6%)

Query: 272 VDFSDCVNLTEFP--LVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCK-RLKRVS 328
           +D +      +    L+S  +I  R   + +++  +       ++ +DLS     +  + 
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH 64

Query: 329 TSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLD 388
             + +   L  L L G    +     L K  +L+ ++L   +  +  +    L    +LD
Sbjct: 65  GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 124

Query: 389 LGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLL 448
             +           +  +    +     +      ++S   +  +           P L+
Sbjct: 125 ELNL------SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 449 SGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHF--ERLPTSVKQLSQLRYLHLS 506
               S + +   DC       +   L+ +  L+LS  +         + ++  L+ L + 
Sbjct: 179 HLDLSDSVMLKNDCFQ-----EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 233

Query: 507 NCNMLQSLPELPIYLVYLEAKNCKRLQTLP 536
                 +L  L   L +L+  NC    T+ 
Sbjct: 234 GIVPDGTLQLLKEALPHLQI-NCSHFTTIA 262

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 8e-04
 Identities = 38/243 (15%), Positives = 78/243 (32%), Gaps = 19/243 (7%)

Query: 138 SSKVHLDQGLRYLPEELRYLHWHQYSLKT-LPLNFDPENLIELNLPYSNV--EQIWEGKK 194
              +H D   R L + +      +  +   L  +F P  +  ++L  S +    +     
Sbjct: 9   GKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS 68

Query: 195 QAFKLKFIDLHHSQYLTKIPD-LVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAG 253
           Q  KL+ + L   +    I + L +  NL R+NL  C+     +      +   +  L  
Sbjct: 69  QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 128

Query: 254 CRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRI------------- 300
                   +++        +    +NL+ +           L                  
Sbjct: 129 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 188

Query: 301 -EEVPSSIECLTNLETLDLSFCKRLKRVS-TSICKLKSLCWLELGGCSNLETFPEILEKM 358
             +       L  L+ L LS C  +   +   + ++ +L  L++ G     T   + E +
Sbjct: 189 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEAL 248

Query: 359 EHL 361
            HL
Sbjct: 249 PHL 251

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 7/126 (5%)

Query: 292 ELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETF 351
           EL L   +I  + +    L   + +D S  +   R       L+ L  L +         
Sbjct: 22  ELDLRGYKIPVIENLGATLDQFDAIDFSDNE--IRKLDGFPLLRRLKTLLVNNNRICRIG 79

Query: 352 PEILEKMEHLLEIDLRETAIRNLP--SSIEYLEGLRKLDLGDCSELAS---LPEKLENLK 406
             + + +  L E+ L   ++  L     +  L+ L  L +               +  + 
Sbjct: 80  EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP 139

Query: 407 SLKYLN 412
            ++ L+
Sbjct: 140 QVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 446 PLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHL 505
              +      EL L    I  I     +L     +  S N   +L      L +L+ L +
Sbjct: 12  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLV 70

Query: 506 SNCNMLQSLP 515
           +N  + +   
Sbjct: 71  NNNRICRIGE 80

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 40/219 (18%), Positives = 77/219 (35%), Gaps = 12/219 (5%)

Query: 289 NIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNL 348
           N I++    + + +   +   L  + TL            T+I  ++ L  L      + 
Sbjct: 20  NAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGV-----TTIEGVQYLNNLIGLELKD- 72

Query: 349 ETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSL 408
                 L  +++L +I   E +   L +            L   S   +    L  L +L
Sbjct: 73  -NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 409 KYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIP 468
           + L  + + I  +       N   +    G   +     L+ LS LT L   D  I++I 
Sbjct: 132 QVLYLDLNQITNISPLAGLTNL--QYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS 189

Query: 469 ADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSN 507
             + SL +++ + L  N    +   +   S L  + L+N
Sbjct: 190 P-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 36/211 (17%), Positives = 74/211 (35%), Gaps = 15/211 (7%)

Query: 273 DFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSIC 332
           + +D V   +       I  L  + T +  +   ++ L NL  L+L   +        I 
Sbjct: 30  NVTDTVTQADLD----GITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQ--------IT 76

Query: 333 KLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDC 392
            L  L  L       L   P         L+            + +  L GL  L +   
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136

Query: 393 SELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLS 452
                         +     +  +A     + +++L++L  LK    +   + PL + L 
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPL-ASLP 195

Query: 453 SLTELHLTDCNITEIPADIGSLSSIVWLALS 483
           +L E+HL +  I+++   + + S++  + L+
Sbjct: 196 NLIEVHLKNNQISDVSP-LANTSNLFIVTLT 225

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 46/354 (12%), Positives = 90/354 (25%), Gaps = 26/354 (7%)

Query: 453 SLTELHLTDCNITEIPADIGSLSSIVWLALSGNHF-----ERLPTSVKQLSQLRYLHLSN 507
           SL    +T  +   + A +    S+  + LSGN         L  ++     L     S+
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 508 CNMLQSLPELPIYLVYLEA--KNCKRLQTLPEIPSSVEELDASMLESIYEHSSGIMDGIL 565
               +   E+P  L  L      C +L T+    ++        L       + +    L
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 566 FFDFTNCLKLNEKEAHKKILADSQQRIQHMASASLRLCYEMVHYTPYGLCNCFPGSEIPD 625
             +        +     + LA +++        S+      +             S    
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 626 WFSNQCSGSSLTIQLPRRSCGRNLVGFALCAVIQFEEDIDASGKYCNVKCNYNFETKTRL 685
                         +             L  +   +      G         ++     L
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248

Query: 686 EANNNVDDYYNLSLNGSMDSDHVLLGFEPCWNTEVPDDGNNQTTISFEFSVECKNEKCHQ 745
             N+       LS  G+          E      +    N     +        +EK   
Sbjct: 249 GLNDC-----LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 746 VKCCGVCPVYANPNDNKPNTLKLILGSEEECTKIRILHDKVGMSGSYDDEDEME 799
           +        +   N N+          ++   +IR +    G  G  D+ D+ME
Sbjct: 304 LL-------FLELNGNR------FSEEDDVVDEIREVFSTRGR-GELDELDDME 343

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 46/245 (18%), Positives = 85/245 (34%), Gaps = 7/245 (2%)

Query: 279 NLTEFPL-VSGNIIELRLWNTRIEEVP-SSIECLTNLETLDLSFCKRLKRVSTSICKLKS 336
            L   P+ +      + L   RI  VP +S     NL  L L      +  + +   L  
Sbjct: 22  GLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 337 LCWLELGGCSNLET-FPEILEKMEHLLEIDLRETAIRNLPSSIEYLEG-LRKLDLGDCSE 394
           L  L+L   + L +  P     +  L  + L    ++ L   +      L+ L L D + 
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

Query: 395 LASLPEKLENLKSLKYLNAEFSAIGQLP-SSISDLNQLKKLKFSGCRGLVLPPLLSGLSS 453
            A   +   +L +L +L    + I  +P  +   L+ L +L     R   + P       
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 454 LTELHLTDCNITEI--PADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNML 511
                    N         +  L ++ +L L+ N +     +    + L+    S+  + 
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP 261

Query: 512 QSLPE 516
            SLP+
Sbjct: 262 CSLPQ 266

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	815
d2bhua3	420	Glycosyltrehalose trehalohydrolase, central domain	100.0
d1ejda_	419	UDP-N-acetylglucosamine enolpyruvyl transferase (E	100.0
d2df7a1	419	Birnavirus VP2 {Infectious bursal disease virus [T	100.0
d1om4a_	418	Nitric oxide (NO) synthase oxygenase domain {Rat (	100.0
d2gp4a2	418	6-phosphogluconate dehydratase EDD {Shewanella one	100.0
d1f61a_	418	Isocitrate lyase {Mycobacterium tuberculosis [TaxI	100.0
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	100.0
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	100.0
d1q7ea_	417	Hypothetical protein YfdW {Escherichia coli [TaxId	100.0
d3bona1	417	Botulinum neurotoxin {Clostridium botulinum, serot	100.0
d1w6ga1	417	Copper amine oxidase, domain 3 {Arthrobacter globi	100.0
d2csga1	417	Hypothetical protein YbiU {Salmonella typhimurium	100.0
d1ltka_	417	Phosphoglycerate kinase {Malaria parasite (Plasmod	100.0
d1gff1_	417	Microvirus capsid proteins {Bacteriophage G4 [TaxI	100.0
d1vema2	417	Bacterial beta-amylase {Bacillus cereus [TaxId: 13	100.0
d1q2oa_	416	Nitric oxide (NO) synthase oxygenase domain {Cow (	100.0
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	100.0
d1d8wa_	416	L-rhamnose isomerase {Escherichia coli [TaxId: 562	100.0
d2vnud4	416	Exosome complex exonuclease RRP44 {Saccharomyces c	100.0
d1igwa_	416	Isocitrate lyase {Escherichia coli [TaxId: 562]}	100.0
d1pb1a_	416	Isocitrate dehydrogenase, ICDH {Escherichia coli [	100.0
d1dnva_	415	Densovirus capsid protein {Galleria mellonella den	100.0
d1so2a_	415	cGMP-inhibited 3',5'-cyclic phosphodiesterase B, p	100.0
d16pka_	415	Phosphoglycerate kinase {Trypanosoma brucei [TaxId	100.0
d2ieaa2	415	Pyruvate dehydrogenase E1 component, PP module {Es	100.0
d1qpga_	415	Phosphoglycerate kinase {Baker's yeast (Saccharomy	100.0
d2qeec1	415	Uncharacterized protein BH0493 {Bacillus haloduran	100.0
d1s5ja2	415	Family B DNA polymerase {Sulfolobus solfataricus [	100.0
d2b8na1	414	Putative glycerate kinase (hypothetical protein TM	100.0
d1kbia1	414	Flavocytochrome b2, C-terminal domain {Baker's yea	100.0
d1o20a_	414	Gamma-glutamyl phosphate reductase {Thermotoga mar	100.0
d1t0la_	414	NADP-dependent isocitrate dehydrogenase {Human (Ho	100.0
d1t5la1	413	Nucleotide excision repair enzyme UvrB {Bacillus c	100.0
d1vh4a_	413	Stabilizer of iron transporter SufD {Escherichia c	100.0
d1hdia_	413	Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId:	100.0
d2qgma1	413	Succinoglycan biosynthesis protein BC3205 {Bacillu	100.0
d1lwda_	413	NADP-dependent isocitrate dehydrogenase {Pig (Sus	100.0
d1zjca1	413	Aminopeptidase S, AMPS {Staphylococcus aureus [Tax	100.0
d1a0tp_	413	Sucrose-specific porin {Enterobacterium (Salmonell	100.0
d1ulva1	413	Glucodextranase, domain A {Arthrobacter globiformi	100.0
d1ocka_	412	Malonamidase E2 {Bradyrhizobium japonicum [TaxId:	100.0
d1yzya1	412	Hypothetical protein HI1011 {Haemophilus influenza	100.0
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	100.0
d1rxxa_	412	Arginine deiminase {Pseudomonas aeruginosa [TaxId:	100.0
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	100.0
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	100.0
d1ufaa2	412	Hypothetical protein TT1467, N-terminal domain {Th	100.0
d1t3ca_	411	Botulinum neurotoxin {Clostridium botulinum, serot	100.0
d2afaa1	411	Putative NAG isomerase YihS {Salmonella typhimuriu	100.0
d1ux5a_	411	Bni1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	100.0
d1izoa_	411	Cytochrome p450 152a1 (Bs-beta) {Bacillus subtilis	100.0
d2ccaa1	410	Catalase-peroxidase KatG {Mycobacterium tuberculos	100.0
d1p1ja1	410	Myo-inositol 1-phosphate synthase {Baker's yeast (	100.0
d1kfsa2	410	DNA polymerase I (Klenow fragment) {Escherichia co	100.0
d1uuqa_	410	Exomannosidase {Cellvibrio mixtus [TaxId: 39650]}	100.0
d1s5ja1	410	Exonuclease domain of family B DNA polymerases {Su	100.0
d2cmza1	409	Spike glycoprotein {Vesicular stomatitis indiana v	100.0
d1tv5a1	409	Dihydroorotate dehydrogenase {Plasmodium falciparu	100.0
d1qtma2	409	DNA polymerase I (Klenow fragment) {Thermus aquati	100.0
d2g0da1	409	Nisin biosynthesis protein NisC {Lactococcus lacti	100.0
d1b25a1	409	Formaldehyde ferredoxin oxidoreductase {Archaeon P	100.0
d1s9ra_	409	Arginine deiminase {Mycoplasma arginini [TaxId: 20	100.0
g1wht.1	409	Serine carboxypeptidase II {Wheat (Triticum vulgar	100.0
d1dkla_	409	Phytase (myo-inositol-hexakisphosphate-3-phosphohy	100.0
d1wzaa2	409	Bacterial alpha-amylase {Halothermothrix orenii [T	100.0
d1r76a_	408	Polygalacturonic acid lyase (pectate lyase) {Azosp	100.0
d1c4oa1	408	Nucleotide excision repair enzyme UvrB {Thermus th	100.0
d1f1oa_	408	Adenylosuccinate lyase {Bacillus subtilis [TaxId:	100.0
d2hhva2	408	DNA polymerase I (Klenow fragment) {Bacillus stear	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1h4pa_	408	Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharom	100.0
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	100.0
d1qs0a_	407	2-oxoisovalerate dehydrogenase (E1B), PP module {P	100.0
d1eu8a_	407	D-maltodextrin-binding protein, MBP {Archaeon Ther	100.0
d1qhoa4	407	Cyclodextrin glycosyltransferase {Bacillus stearot	100.0
d1mwva1	406	Catalase-peroxidase KatG {Burkholderia pseudomalle	100.0
d1itka1	406	Catalase-peroxidase KatG {Archaeon Haloarcula mari	100.0
d1ub2a1	406	Catalase-peroxidase KatG {Synechococcus sp. pcc 79	100.0
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	100.0
d1ei6a_	406	Phosphonoacetate hydrolase {Pseudomonas fluorescen	100.0
d2ayia1	406	Aminopeptidase T {Thermus thermophilus [TaxId: 274	100.0
d3bmva4	406	Cyclodextrin glycosyltransferase {Thermoanaerobact	100.0
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	100.0
d2nwwa1	405	Proton glutamate symport protein {Pyrococcus horik	100.0
d1h6za3	405	Pyruvate phosphate dikinase, N-terminal domain {Tr	100.0
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	100.0
d1lnsa3	405	X-Prolyl dipeptidyl aminopeptidase PepX, middle do	100.0
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	100.0
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	100.0
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	100.0
d1re9a_	404	Cytochrome P450-CAM {Pseudomonas putida [TaxId: 30	100.0
d2b5dx2	404	Alpha-amylase AmyC {Thermotoga maritima [TaxId: 23	100.0
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	100.0
d1h12a_	404	Endo-1,4-beta-xylanase {Pseudoalteromonas haloplan	100.0
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	100.0
d1ueda_	403	p450 monoxygenase OxyC {Amycolatopsis orientalis [	100.0
d1xksa_	403	Nuclear pore complex protein Nup133 {Human (Homo s	100.0
d1hx0a2	403	Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982	100.0
d1gwia_	403	Cyp154c1 monooxygenase {Streptomyces coelicolor [T	100.0
d3b55a1	403	Succinoglycan biosynthesis protein BC3120 {Bacillu	100.0
d2g5da1	402	Membrane-bound lytic murein transglycosylase A, ML	100.0
d1xk7a1	402	Crotonobetainyl-CoA:carnitine CoA-transferase, Cai	100.0
d1dofa_	402	Adenylosuccinate lyase {Archaeon Pyrobaculum aerop	100.0
d1fp3a_	402	N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa)	100.0
d1z8oa1	402	Cytochrome P450-ERYF {Saccharopolyspora erythraea	100.0
g1w2w.1	402	Putative methylthioribose-1-phosphate isomerase Yp	100.0
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	100.0
d1iira_	401	UDP-glucosyltransferase GtfB {Amycolatopsis orient	100.0
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	100.0
d2h6fb1	401	Protein farnesyltransferase, beta-subunit {Human (	100.0
d1rrva_	401	TDP-vancosaminyltransferase GftD {Amycolatopsis or	100.0
d1q5da_	401	Cytochrome P450epok {Sorangium cellulosum [TaxId:	100.0
d1jdpa_	401	Hormone binding domain of the atrial natriuretic p	100.0
d1a12a_	401	Regulator of chromosome condensation RCC1 {Human (	100.0
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	100.0
d2r7da2	401	Ribonuclease II family protein DR0020 {Deinococcus	100.0
d1odoa_	401	Cyp154a1 monooxygenase {Streptomyces coelicolor [T	100.0
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	100.0
d1ru4a_	400	Pectate transeliminase {Erwinia chrysanthemi [TaxI	100.0
d3ovwa_	400	Cellobiohydrolase I (cellulase, Endoglucanase I, C	100.0
d1inpa_	400	Inositol polyphosphate 1-phosphatase {Cow (Bos tau	100.0
d2olua2	400	Penicillin-binding protein 2, PBP2 {Staphylococcus	100.0
d1eh9a3	400	Glycosyltrehalose trehalohydrolase, central domain	100.0
d1oyaa_	399	Old yellow enzyme (OYE) {Lager yeast (Saccharomyce	100.0
d1jfba_	399	Cytochrome P450-NOR, nitric reductase {Fungus (Fus	100.0
d1s1fa_	399	Cyp158a2 {Streptomyces coelicolor [TaxId: 1902]}	100.0
d2ah2a2	399	Trypanosoma sialidase {Parasitic flagellate protoz	100.0
d1bn8a_	399	Pectate lyase {Bacillus subtilis [TaxId: 1423]}	100.0
d1ojja_	399	Cellobiohydrolase I (cellulase, Endoglucanase I, C	100.0
d1vpea_	398	Phosphoglycerate kinase {Thermotoga maritima [TaxI	100.0
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	100.0
d1vlja_	398	NADH-dependent butanol dehydrogenase A (TM0820) {T	100.0
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	100.0
d1q1la_	397	Chorismate synthase, AroC {Aquifex aeolicus [TaxId	100.0
d1vkoa1	397	Myo-inositol 1-phosphate synthase {Caenorhabditis	100.0
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	100.0
d1vjva_	397	Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y	100.0
d1lf6a1	397	Bacterial glucoamylase, C-terminal domain {Thermoa	100.0
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	100.0
d1m7xa3	396	1,4-alpha-glucan branching enzyme, central domain	100.0
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	100.0
d1io1a_	395	Phase 1 flagellin {Salmonella typhimurium [TaxId:	100.0
g1f8v.1	395	Alphanodavirus capsid protein {Pariacoto virus [Ta	100.0
d2bfda1	395	Branched-chain alpha-keto acid dehydrogenase, PP m	100.0
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	100.0
d1aora1	395	Aldehyde ferredoxin oxidoreductase {Archaeon Pyroc	100.0
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	100.0
d1w36b2	395	Exodeoxyribonuclease V beta chain (RecB), N-termin	100.0
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	100.0
d1n40a_	395	Cyp121 monooxygenase (P450 Mt2) {Mycobacterium tub	100.0
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	100.0
d1phpa_	394	Phosphoglycerate kinase {Bacillus stearothermophil	100.0
d1u1ha1	394	5-methyltetrahydropteroyltriglutamate--homocystein	100.0
d1qo7a_	394	Bacterial epoxide hydrolase {Aspergillus niger [Ta	100.0
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	100.0
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	100.0
d1lfka_	394	p450 monoxygenase OxyB {Amycolatopsis orientalis [	100.0
d1atia2	394	Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil	100.0
d2pb1a1	394	Exo-beta-(1,3)-glucanase {Yeast (Candida albicans)	100.0
d2d3na2	394	Bacterial alpha-amylase {Bacillus sp. 707 [TaxId:	100.0
d1q8ia2	394	Family B DNA polymerase {Escherichia coli [TaxId:	100.0
d1ldja2	394	Cullin homolog 1, Cul-1 {Human (Homo sapiens) [Tax	100.0
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	100.0
d1xlma_	393	D-xylose isomerase {Arthrobacter, strain b3728 [Ta	100.0
d1kwga2	393	A4 beta-galactosidase {Thermus thermophilus [TaxId	100.0
d1g8ma2	393	AICAR transformylase domain of bifunctional purine	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	100.0
d1hvxa2	393	Bacterial alpha-amylase {Bacillus stearothermophil	100.0
d1e43a2	393	Bacterial alpha-amylase {Chimera (Bacillus amyloli	100.0
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	100.0
d2d0ta1	392	Indoleamine 2,3-dioxygenase {Human (Homo sapiens)	100.0
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	100.0
d1xima_	392	D-xylose isomerase {Actinoplanes missouriensis [Ta	100.0
d1yvua2	392	Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax	100.0
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	100.0
d1pn3a_	391	TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi	100.0
d1nt4a_	391	Glucose-1-phosphatase {Escherichia coli [TaxId: 56	100.0
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	100.0
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	100.0
d1lwha2	391	4-alpha-glucanotransferase {Thermotoga maritima [T	100.0
d4ubpc2	390	alpha-subunit of urease, catalytic domain {Bacillu	100.0
d1v6sa_	390	Phosphoglycerate kinase {Thermus thermophilus [Tax	100.0
d1nsca_	390	Influenza neuraminidase {Influenza B virus, differ	100.0
d1qopb_	390	Tryptophan synthase, beta-subunit {Salmonella typh	100.0
d1oj7a_	390	Hypothetical oxidoreductase yqhD {Escherichia coli	100.0
d1ud2a2	390	Bacterial alpha-amylase {Bacillus sp., ksm-k38 [Ta	100.0
d1sg6a_	389	Dehydroquinate synthase, DHQS {Aspergillus nidulan	100.0
d1jiha2	389	DNA polymerase eta {Baker's yeast (Saccharomyces c	100.0
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	100.0
d1e9yb2	389	alpha-subunit of urease, catalytic domain {Helicob	100.0
d2o3ia1	389	Hypothetical protein CV3147 {Chromobacterium viola	100.0
d1f8ea_	388	Influenza neuraminidase {Influenza A virus, differ	100.0
d1u7la_	388	Vacuolar ATP synthase subunit C {Baker's yeast (Sa	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1qxoa_	388	Chorismate synthase, AroC {Streptococcus pneumonia	100.0
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	100.0
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	100.0
d2dcfa1	388	6-aminohexanoate-dimer hydrolase NylC {Flavobacter	100.0
d1q8ia1	388	Exonuclease domain of family B DNA polymerases {Es	100.0
d2py5a2	388	phi29 DNA polymerase {Bacteriophage phi-29 [TaxId:	100.0
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	100.0
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1ku0a_	388	Lipase L1 {Bacillus stearothermophilus [TaxId: 142	100.0
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	100.0
d1x38a1	388	Beta-D-glucan exohydrolase, N-terminal domain {Bar	100.0
d1zeea1	387	Hypothetical protein SO4414 {Shewanella oneidensis	100.0
d2aepa1	387	Influenza neuraminidase {Influenza A virus, differ	100.0
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	100.0
d1zsqa2	387	Myotubularin-related protein 2, C-terminal domain	100.0
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	100.0
d1bxba_	387	D-xylose isomerase {Thermus aquaticus, subsp. Ther	100.0
d2qp8a1	387	beta-secretase (memapsin) {Human (Homo sapiens) [T	100.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	100.0
d1ur4a_	387	Beta-1,4-galactanase {Bacillus licheniformis [TaxI	100.0
d2ex0a1	387	Alpha-2,3/2,6-sialyltransferase/sialidase {Pasteur	100.0
d1v8za1	386	Tryptophan synthase, beta-subunit {Archaeon Pyroco	100.0
d1r6ta2	386	Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo	100.0
d1muwa_	386	D-xylose isomerase {Streptomyces olivochromogenes	100.0
d3c10a1	386	Histone deacetylase 7, HDAC7 {Human (Homo sapiens)	100.0
d1v5da_	386	Chitosanase {Bacillus sp., strain k17 [TaxId: 1409	100.0
d1rrma_	385	Lactaldehyde reductase FucO {Escherichia coli [Tax	100.0
d1uhga_	385	Ovalbumin {Hen (Gallus gallus) [TaxId: 9031]}	100.0
d1xmxa_	385	Hypothetical protein VC1899 {Vibrio cholerae [TaxI	100.0
d1ir6a_	385	Exonuclease RecJ {Thermus thermophilus [TaxId: 274	100.0
d1ejxc2	385	alpha-subunit of urease, catalytic domain {Klebsie	100.0
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	100.0
d1n97a_	385	Cyp175a1 {Thermus thermophilus [TaxId: 274]}	100.0
d2b9va2	385	Alpha-amino acid ester hydrolase {Acetobacter past	100.0
d2c5wb1	385	Penicillin-binding protein 1a, transpeptidase doma	100.0
d2ix0a4	385	Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5	100.0
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	100.0
d1mtyb_	384	Methane monooxygenase hydrolase beta subunit {Meth	100.0
d3c0na2	384	(Pro)aerolysin, pore-forming lobe {Aeromonas hydro	100.0
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	100.0
d1hn0a1	384	Chondroitin ABC lyase I {Proteus vulgaris [TaxId:	100.0
d2fvka2	384	Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d1vz6a_	383	Glutamate N-acetyltransferase 2 (ornithine acetylt	100.0
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	100.0
d1u7ga_	383	Ammonium transporter AmtB {Escherichia coli [TaxId	100.0
d1mhyb_	383	Methane monooxygenase hydrolase beta subunit {Meth	100.0
d1bo1a_	383	Phosphatidylinositol phosphate kinase IIbeta, PIPK	100.0
d1imva_	383	Pigment epithelium-derived factor, PEDF {Human (Ho	100.0
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	100.0
d2ayna1	383	Ubiquitin carboxyl-terminal hydrolase 14 {Human (H	100.0
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	100.0
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	100.0
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	100.0
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1ea9c3	382	Maltogenic amylase, central domain {Bacillus sp.,	100.0
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	100.0
d1t1ua1	382	Choline O-acetyltransferase {Rat (Rattus norvegicu	100.0
d1xl7a1	382	Peroxisomal carnitine O-octanoyltransferase, COT {	100.0
d1wzla3	382	Maltogenic amylase, central domain {Thermoactinomy	100.0
d1j0ha3	382	Neopullulanase, central domain {Bacillus stearothe	100.0
d1by7a_	381	Plasminogen activator inhibitor-2 {Human (Homo sap	100.0
d3bvua3	381	Golgi alpha-mannosidase II {Fruit fly (Drosophila	100.0
d1odza_	381	Mannanase A, ManA {Pseudomonas cellulosa (Cellvibr	100.0
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	100.0
d2bo4a1	381	Mannosylglycerate synthase, MGS {Rhodothermus mari	100.0
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	100.0
d1mpxa2	381	Alpha-amino acid ester hydrolase {Xanthomonas citr	100.0
d2guya2	381	Fungal alpha-amylases {Aspergillus oryzae, Taka-am	100.0
d2aaaa2	381	Fungal alpha-amylases {Aspergillus niger, acid amy	100.0
d1t6ex_	381	Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu	100.0
d1vbga3	380	Pyruvate phosphate dikinase, N-terminal domain {Ma	100.0
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	100.0
d1q45a_	380	12-oxophytodienoate reductase (OPR, OYE homolog) {	100.0
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	100.0
d1qyia_	380	Hypothetical protein MW1667 (SA1546) {Staphylococc	100.0
d1edga_	380	Endoglucanase CelA {Clostridium cellulolyticum [Ta	100.0
d1elja_	380	D-maltodextrin-binding protein, MBP {Archaeon Pyro	100.0
d1lj5a_	379	Plasminogen activator inhibitor-1 {Human (Homo sap	100.0
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	100.0
d3sila_	379	Salmonella sialidase {Salmonella typhimurium, stra	100.0
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	100.0
d1xqga_	378	Maspin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2icya2	378	UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c	100.0
d1jaea2	378	Animal alpha-amylase {Yellow mealworm (Tenebrio mo	100.0
d1a59a_	377	Citrate synthase {Antarctic bacterium DS2-3R [TaxI	100.0
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	100.0
d1o6ca_	377	UDP-N-acetylglucosamine 2-epimerase {Bacillus subt	100.0
d2d5ja1	377	Unsaturated glucuronyl hydrolase {Bacillus sp. GL1	100.0
d1k8qa_	377	Gastric lipase {Dog (Canis familiaris) [TaxId: 961	100.0
d2i71a1	377	Hypothetical protein SSO1389 {Sulfolobus solfatari	100.0
d1ci9a_	377	Esterase EstB {Burkholderia gladioli [TaxId: 28095	100.0
d1jmma_	377	V-region of surface antigen I/II (SA I/II, PAC) {S	100.0
d1nm8a1	377	Carnitine acetyltransferase {Human (Homo sapiens)	100.0
d1k9oi_	376	Alaserpin (serpin 1) {Tobacco hornworm (Manduca se	100.0
d2vata1	376	Acetyl-CoA:deacetylcephalosporin C acetyltransfera	100.0
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	100.0
d1f6da_	376	UDP-N-acetylglucosamine 2-epimerase {Escherichia c	100.0
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	100.0
d1wu4a1	376	Xylanase Y {Bacillus halodurans [TaxId: 86665]}	100.0
d2v3qa1	376	PstS-like phosphate-binding protein {Human (Homo s	100.0
d1bhea_	376	Polygalacturonase {Erwinia carotovora, subsp. caro	100.0
d2fug41	375	NADH-quinone oxidoreductase chain 4, Nqo4 {Thermus	100.0
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	100.0
g1hle.1	375	Elastase inhibitor {Horse (Equus caballus) [TaxId:	100.0
d1ih7a1	375	Exonuclease domain of family B DNA polymerases {Ba	100.0
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	100.0
d1kbla3	375	Pyruvate phosphate dikinase, N-terminal domain {Cl	100.0
d1txka2	374	Glucans biosynthesis protein G (MdoG, OpgG), N-ter	100.0
d1ioma_	374	Citrate synthase {Thermus thermophilus [TaxId: 274	100.0
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	100.0
d2a0ua1	374	Initiation factor 2b {Leishmania major [TaxId: 566	100.0
d1nd7a_	374	WW domain-containing protein 1, WWP1 {Human (Homo	100.0
d1gwja_	374	Morphinone reductase {Pseudomonas putida [TaxId: 3	100.0
d1rp4a_	374	Endoplasmic oxidoreductin 1, Ero1p {Baker's yeast	100.0
d2bvca2	374	Glutamine synthetase, C-terminal domain {Mycobacte	100.0
d1so7a_	374	Sialidase 2 (Neu2) {Human (Homo sapiens) [TaxId: 9	100.0
d1kfwa1	374	Psychrophilic chitinase B {Arthrobacter sp., tad20	100.0
d1v4va_	373	UDP-N-acetylglucosamine 2-epimerase {Thermus therm	100.0
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	100.0
d1ogmx2	373	Dextranase, catalytic domain {Penicillium miniolut	100.0
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	100.0
d1miqa_	373	Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo	100.0
d1qo0a_	373	Amide receptor/negative regulator of the amidase o	100.0
d1m0wa2	373	Eukaryotic glutathione synthetase ATP-binding doma	100.0
d1r5ya_	372	Queosine tRNA-guanine transglycosylase {Zymomonas	100.0
d1c3pa_	372	HDAC homologue {Aquifex aeolicus [TaxId: 63363]}	100.0
d1noya_	372	Exonuclease domain of family B DNA polymerases {Ba	100.0
d1qlpa_	372	Antitrypsin, alpha-1 {Human (Homo sapiens) [TaxId:	100.0
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	100.0
d1vkpa_	372	Agmatine iminohydrolase {Thale-cress (Arabidopsis	100.0
d1teda_	372	Polyketide synthase PKS18 {Mycobacterium tuberculo	100.0
g1htr.1	372	Pepsin(ogen) {Human (Homo sapiens), progastricsin	100.0
d1mkfa_	371	Viral chemokine binding protein m3 {Murid herpesvi	100.0
d1r53a_	371	Chorismate synthase, AroC {Baker's yeast (Saccharo	100.0
d1to6a_	371	Glycerate kinase GlxK {Neisseria meningitidis, (se	100.0
d1aj8a_	371	Citrate synthase {Archaeon Pyrococcus furiosus [Ta	100.0
d1n7oa1	371	Hyaluronate lyase {Streptococcus pneumoniae [TaxId	100.0
d1f1sa1	371	Hyaluronate lyase {Streptococcus agalactiae [TaxId	100.0
d1c8ba_	371	Germination protease {Bacillus megaterium [TaxId:	100.0
d1eg1a_	371	Cellobiohydrolase I (cellulase, Endoglucanase I, C	100.0
d1r85a_	371	Xylanase {Bacillus stearothermophilus, Xt6 [TaxId:	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	100.0
d2dexx3	370	Peptidylarginine deiminase Pad4, catalytic C-termi	100.0
d2gx8a1	370	Nif3-related protein BC4286 {Bacillus cereus [TaxI	100.0
d2hgsa4	370	Eukaryotic glutathione synthetase ATP-binding doma	100.0
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	100.0
d3psga_	370	Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d2iw1a1	370	Lipopolysaccharide core biosynthesis protein RfaG	100.0
d1iq0a2	370	Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi	100.0
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	100.0
d1rh9a1	370	Beta-mannanase {Tomato (Lycopersicon esculentum) [	100.0
d1itua_	369	Renal dipeptidase {Human (Homo sapiens) [TaxId: 96	100.0
d1rwha1	369	Chondroitinase AC {Arthrobacter aurescens [TaxId:	100.0
d2heka1	369	Hypothetical protein aq_1910 {Aquifex aeolicus [Ta	100.0
d2ewoa1	369	Agmatine iminohydrolase {Streptococcus mutans [Tax	100.0
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	100.0
g1as4.1	369	Antichymotrypsin, alpha-1 {Human (Homo sapiens) [T	100.0
d1ga6a_	369	Serine-carboxyl proteinase, SCP {Pseudomonas sp.,	100.0
d1laxa_	369	D-maltodextrin-binding protein, MBP {Escherichia c	100.0
d1e7ua4	369	Phoshoinositide 3-kinase (PI3K), catalytic domain	100.0
d2cu0a1	368	Inosine monophosphate dehydrogenase (IMPDH) {Pyroc	100.0
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	100.0
d1r8ga_	368	Carboxylate-amine ligase YbdK {Escherichia coli [T	100.0
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	100.0
d1f52a2	368	Glutamine synthetase, C-terminal domain {Salmonell	100.0
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	100.0
d1pyya4	368	Penicillin-binding protein 2x (pbp-2x), transpepti	100.0
d1d3ga_	367	Dihydroorotate dehydrogenase {Human (Homo sapiens)	100.0
d1o7xa_	367	Citrate synthase {Archaeon Sulfolobus solfataricus	100.0
d1iuqa_	367	Glycerol-3-phosphate (1)-acyltransferase {Cushaw s	100.0
d1b65a_	367	L-aminopeptidase D-Ala-esterase/amidase DmpA {Ochr	100.0
d1ue8a_	367	Cyp119 {Archaeon Sulfolobus tokodaii [TaxId: 11195	100.0
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	100.0
d1ursa_	367	D-maltodextrin-binding protein, MBP {Alicyclobacil	100.0
d1qw9a2	367	Alpha-L-arabinofuranosidase, catalytic domain {Bac	100.0
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	100.0
d1moqa_	366	"Isomerase domain" of glucosamine 6-phosphate synt	100.0
d1io7a_	366	Cyp119 {Archaeon Sulfolobus solfataricus [TaxId: 2	100.0
d1h6za1	366	Pyruvate phosphate dikinase, C-terminal domain {Tr	100.0
d2bvya2	366	Mannanase A, ManA {Cellulomonas fimi [TaxId: 1708]	100.0
d1jq5a_	366	Glycerol dehydrogenase {Bacillus stearothermophilu	100.0
d1u5ua_	366	Allene oxide synthase-lipoxygenase protein, N-term	100.0
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	100.0
d1fn9a_	365	Outer capsid protein sigma 3 {Reovirus [TaxId: 108	100.0
d1um0a_	365	Chorismate synthase, AroC {Helicobacter pylori [Ta	100.0
d2pnwa1	365	Membrane-bound lytic murein transglycosylase A, ML	100.0
d1w85a_	365	Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st	100.0
d1u1ha2	365	5-methyltetrahydropteroyltriglutamate--homocystein	100.0
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	100.0
d3c8ya1	365	Fe-only hydrogenase, catalytic domain {Clostridium	100.0
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	100.0
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	100.0
d2jera1	364	Agmatine iminohydrolase {Enterococcus faecalis [Ta	100.0
d1t64a_	364	Histone deacetylase 8, HDAC8 {Human (Homo sapiens)	100.0
d1sdma_	364	Kinesin heavy chain-like protein {Potato (Solanum	100.0
d1icpa_	364	12-oxophytodienoate reductase (OPR, OYE homolog) {	100.0
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	100.0
d1kbla1	364	Pyruvate phosphate dikinase, C-terminal domain {Cl	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1kq3a_	364	Glycerol dehydrogenase {Thermotoga maritima [TaxId	100.0
d1oc7a_	364	Cellobiohydrolase II (Cel6) {Humicola insolens, Ce	100.0
d1us3a2	364	Xylanase 10c {Cellvibrio japonicus [TaxId: 155077]	100.0
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	100.0
d1w0pa3	364	Vibrio cholerae sialidase {Vibrio cholerae [TaxId:	100.0
d1m7va_	363	Nitric oxide (NO) synthase oxygenase domain {Bacil	100.0
d1zaia1	363	Fructose-1,6-bisphosphate aldolase {Rabbit (Orycto	100.0
d1khba1	363	Cytosolic phosphoenolpyruvate carboxykinase (GTP-h	100.0
d1zq1a2	363	Glutamyl-tRNA(Gln) amidotransferase subunit D, Gat	100.0
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	100.0
d1onha_	363	AMPC beta-Lactamase, class C {Enterobacter cloacae	100.0
d1vyra_	363	Pentaerythritol tetranirate reductase {Enterobacte	100.0
d1nc5a_	363	Hypothetical protein YteR {Bacillus subtilis [TaxI	100.0
d1cnza_	363	3-isopropylmalate dehydrogenase, IPMDH {Salmonella	100.0
d1kwfa_	363	CelA cellulase {Clostridium thermocellum [TaxId: 1	100.0
d2a1ha1	363	Branched-chain aminoacid aminotransferase {Human (	100.0
d1umga_	362	ST0318 {Archaeon Sulfolobus tokodaii [TaxId: 11195	100.0
d1gqea_	362	Polypeptide chain release factor 2 (RF2) {Escheric	100.0
d1umda_	362	Branched-chain alpha-keto acid dehydrogenase, PP m	100.0
d2pl5a1	362	Homoserine O-acetyltransferase {Leptospira interro	100.0
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	100.0
d3thia_	362	Thiaminase I {Paenibacillus thiaminolyticus [TaxId	100.0
d1v8ka_	362	Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090	100.0
d1vlca_	362	3-isopropylmalate dehydrogenase, IPMDH {Thermotoga	100.0
d2drwa1	362	D-Amino acid amidase DaaA {Ochrobactrum anthropi [	100.0
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	100.0
d1nqka_	362	Alkanesulfonate monooxygenase SsuD {Escherichia co	100.0
d2gjxa1	362	beta-hexosaminidase A {Human (Homo sapiens) [TaxId	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1qjwa_	362	Cellobiohydrolase II (Cel6) {Trichoderma reesei, C	100.0
d2ozla1	361	E1-beta subunit of pyruvate dehydrogenase (PP modu	100.0
d1dhsa_	361	Deoxyhypusine synthase, DHS {Human (Homo sapiens)	100.0
d1x1ia1	361	Xanthan lyase {Bacillus sp. gl1 [TaxId: 84635]}	100.0
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	100.0
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	100.0
d1lt7a_	361	Betaine-homocysteine S-methyltransferase {Human (H	100.0
d1rqga2	361	Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys	100.0
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	100.0
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	100.0
d1mxga2	361	Bacterial alpha-amylase {Archaeon Pyrococcus woese	100.0
d1pe9a_	361	Pectate lyase {Erwinia chrysanthemi, type A [TaxId	100.0
d1sq1a_	360	Chorismate synthase, AroC {Campylobacter jejuni [T	100.0
d1qo5a_	360	Fructose-1,6-bisphosphate aldolase {Human (Homo sa	100.0
d1jdwa_	360	L-arginine: glycine amidinotransferase {Human (Hom	100.0
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	100.0
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	100.0
d1xfia_	360	Hypothetical protein At2g17340 {Thale cress (Arabi	100.0
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	100.0
d1oxwa_	360	Patatin {Heartleaf nightshade (Solanum cardiophyll	100.0
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	100.0
d2jbwa1	360	2,6-dihydropseudooxynicotine hydrolase {Arthrobact	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d4bcla_	359	Bacteriochlorophyll A protein {Prosthecochloris ae	100.0
d1goxa_	359	Glycolate oxidase {Spinach (Spinacia oleracea) [Ta	100.0
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	100.0
d1x74a1	359	2-methylacyl-CoA racemase Mcr {Mycobacterium tuber	100.0
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	100.0
d1yvra1	359	60-kda SS-aARo ribonucleoprotein {African clawed f	100.0
d2hrca1	359	Ferrochelatase {Human (Homo sapiens) [TaxId: 9606]	100.0
d1qcxa_	359	Pectin lyase {Aspergillus niger, type B [TaxId: 50	100.0
d1idka_	359	Pectin lyase {Aspergillus niger, type A [TaxId: 50	100.0
d1o2da_	359	Alcohol dehydrogenase TM0920 {Thermotoga maritima	100.0
g1lq8.1	358	Protein C inhibitor {Human (Homo sapiens) [TaxId:	100.0
d2hdsa1	358	AMPC beta-Lactamase, class C {Escherichia coli, ce	100.0
d1m7ja3	358	N-acyl-D-aminoacid amidohydrolase, catalytic domai	100.0
d1jkma_	358	Carboxylesterase {Bacillus subtilis, brefeldin A e	100.0
d1dosa_	358	Fructose-bisphosphate aldolase (FBP aldolase) {Esc	100.0
d1ecea_	358	Endocellulase E1 {Acidothermus cellulolyticus [Tax	100.0
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	100.0
d1edqa2	358	Chitinase A, catalytic domain {Serratia marcescens	100.0
d2qapa1	357	Fructose-1,6-bisphosphate aldolase {Trypanosome (L	100.0
d1taza_	357	Catalytic domain of cyclic nucleotide phosphodiest	100.0
d2b61a1	357	Homoserine O-acetyltransferase {Haemophilus influe	100.0
d1t1ga_	357	Serine-carboxyl proteinase, SCP {Bacillus novosp.	100.0
d1a05a_	357	3-isopropylmalate dehydrogenase, IPMDH {Thiobacill	100.0
d2amxa1	357	Adenosine deaminase (ADA) {Plasmodium yoelii [TaxI	100.0
d1yyda1	357	Fungal peroxidase (ligninase) {Basidomycetos fungu	100.0
d1gcya2	357	G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase	100.0
d1mppa_	357	Pepsin {Mucor pusillus [TaxId: 4840]}	100.0
d1g01a_	357	Alkaline cellulase K catalytic domain {Bacillus sp	100.0
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	100.0
d16vpa_	356	Conserved core of transcriptional regulatory prote	100.0
d1r3sa_	356	Uroporphyrinogen decarboxylase, UROD {Human (Homo	100.0
d1w8oa3	356	Micromonospora sialidase, N-terminal domain {Micro	100.0
d1l0wa3	356	Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph	100.0
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	100.0
d1lbqa_	356	Ferrochelatase {Baker's yeast (Saccharomyces cerev	100.0
d1v53a1	356	3-isopropylmalate dehydrogenase, IPMDH {Bacillus c	100.0
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	100.0
d2ebsa2	356	Oligoxyloglucan reducing end-specific cellobiohydr	100.0
d1jaka1	356	beta-N-acetylhexosaminidase {Streptomyces plicatus	100.0
d1goia2	356	Chitinase B, catalytic domain {Serratia marcescens	100.0
d1vbga1	356	Pyruvate phosphate dikinase, C-terminal domain {Ma	100.0
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	100.0
d1fuia2	355	L-fucose isomerase, N-terminal and second domains	100.0
d1luca_	355	Bacterial luciferase alpha chain, LuxA {Vibrio har	100.0
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
g1mtp.1	355	Thermopin {Thermobifida fusca [TaxId: 2021]}	100.0
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	100.0
d1iq8a1	355	Archaeosine tRNA-guanine transglycosylase, N-termi	100.0

>d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Glycosyltrehalose trehalohydrolase, central domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=0  Score=31729.16  Aligned_cols=1  Identities=0%  Similarity=-0.825  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~w~~~~~~~~~~~~~viYe~~~~~f~~~Gd~~g~~~~ldyl~~LGv~~i~L~Pv~~~~~~~~~GY~~~d~~~vdp~~G   80 (420)
T d2bhua3           1 TFDWTDADWHGIKLADCVFYEVHVGTFTPEGTYRAAAEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAPYG   80 (420)
T ss_dssp             SSCCCCTTCCCCCGGGCCEEEECHHHHSSSCSHHHHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGC
T ss_pred             CCCCCCCCCCCCCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             96899989798884224899996002188999999998679999769998995998768888998888566888685659


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~d~~~lv~~aH~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~dlN~~np~v~~~~~~~~~~Wl~~~GVD  160 (420)
T d2bhua3          81 RPEDLMALVDAAHRLGLGVFLDVVYNHFGPSGNYLSSYAPSYFTDRFSSAWGMGLDYAEPHMRRYVTGNARMWLRDYHFD  160 (420)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCCHHHHCGGGEEEEEECSSSEEECTTSHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEECCCCC
T ss_conf             99999999999974054534465535667777633334443334554322345545368699999988764032014653


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 GfR~D~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (420)
T d2bhua3         161 GLRLDATPYMTDDSETHILTELAQEIHELGGTHLLLAEDHRNLPDLVTVNHLDGIWTDDFHHETRVTLTGEQEGYYAGYR  240 (420)
T ss_dssp             EEEETTGGGCCCCSSSCHHHHHHHHHHTTCSCCEEEEECSSCCTHHHHTTCCSEEECTHHHHHHHHHHHCCCSGGGGGCC
T ss_pred             EEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC
T ss_conf             78873333202122310079998888764687425620357753121001125422323210444301334445312330


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~nHD~~~~~~~~~r~~~~~~~~~~~~k~a~~~ll  320 (420)
T d2bhua3         241 GGAEALAYTIRRGWRYEGQFWAVKGEEHERGHPSDALEAPNFVYCIQNHDQIGNRPLGERLHQSDGVTLHEYRGAAALLL  320 (420)
T ss_dssp             CSHHHHHHHHHHSSSCEEEEECCTTCCEEEECCCTTCCGGGEEEESCCHHHHHTSTTCCCGGGSTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHCHHHHHCCCCCCCCHHHEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             26678999985144446520443153554126433455213034321566323553112356643565999999999998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 t~pG~P~iy~GdEig~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  400 (420)
T d2bhua3         321 TLPMTPLLFQGQEWAASTPFQFFSDHAGELGQAVSEGRKKEFGGFSGFSGEDVPDPQAEQTFLNSKLNWAEREGGEHART  400 (420)
T ss_dssp             HSSSEEEEETTGGGTCSSCCCCCCCCCHHHHHHHHHHHHHHC---------CCCCTTSHHHHHTTSCCSGGGGSHHHHHH
T ss_pred             HCCCCCEEECCHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHH
T ss_conf             48998798577511789986323456402203544466311367776665557886555544456678788623476899


Q ss_pred             -------------------C
Q ss_conf             -------------------9
Q 003496          278 -------------------V  278 (815)
Q Consensus       278 -------------------~  278 (815)
                                         .
T Consensus       401 ~~~yr~Li~lRk~~p~l~~~  420 (420)
T d2bhua3         401 LRLYRDLLRLRREDPVLHNR  420 (420)
T ss_dssp             HHHHHHHHHHHHHCTTTTCC
T ss_pred             HHHHHHHHHHHHCCHHHHCC
T ss_conf             99999999999568987575

>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: EPT/RTPC-like
family: Enolpyruvate transferase, EPT
domain: UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ)
species: Enterobacter cloacae [TaxId: 550]

Probab=100.00  E-value=0  Score=31658.59  Aligned_cols=1  Identities=0%  Similarity=-0.926  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 M~~~~i~g~~~L~G~V~ipgsKS~s~Rali~aaLa~g~s~I~n~l~s~D~~~~~~al~~LG~~I~~~~~~~I~~~~~~~~   80 (419)
T d1ejda_           1 MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERDGSVWIDASNVNNF   80 (419)
T ss_dssp             CEEEEEEECCCCEEEEECCBCHHHHHHHHHHGGGBSSCEEEESCCCCHHHHHHHHHHHHTTCEEEESSSEEEECTTCCCC
T ss_pred             CCEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEECCEEEEECCCCCCC
T ss_conf             98699948890477997888389999999999984998999259901999999999997799899898799989997777


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~t~~~~~~~~a~~~~~~~~l~Gd~sL~~RPm~~li~~L~~lGa~i~~~~g~~~~~i~g~l~g~~~~~~~  160 (419)
T d1ejda_          81 SAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCAIGARPVDLHIFGLEKLGAEIKLEEGYVKASVNGRLKGAHIVMDK  160 (419)
T ss_dssp             EECHHHHTTCGGGGGGHHHHHHHHSEEEEECCCCSCCSSCTTHHHHHHHHHTTCEEEEETTEEEEECSSSCBCCEEECSS
T ss_pred             CCCHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCEEEECCCCCCCCEEECCC
T ss_conf             66554540354320024425665277524666643457774267889998536169962892445337886674674587


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~Ssq~~s~llla~~~~~g~~~i~~~~~~~~i~~t~~~l~~~G~~i~~~~~~~~~i~g~~~~~~~~~~V~~D~ssAa~~~~  240 (419)
T d1ejda_         161 VSVGATVTIMSAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEGVERLGGGVYRVLPDRIETGTFLV  240 (419)
T ss_dssp             CCHHHHHHHHHHHTTSBSEEEEETCCCCHHHHHHHHHHHHTTCEEECTTSSEEEEECCSCBCCEEEECCBCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCEEEECCCCEEEEECCCCCCCCCCEEECCHHHHHHHHHH
T ss_conf             62567788984455237963542024441566677776522010011795499980542346774053570664311333


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 aa~i~g~~i~i~~~~~~~~~~~~~~l~~mg~~i~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~  320 (419)
T d1ejda_         241 AAAISGGKIVCRNAQPDTLDAVLAKLREAGADIETGEDWISLDMHGKRPKAVTVRTAPHPAFPTDMQAQFTLLNLVAEGT  320 (419)
T ss_dssp             HHHTTTCEEEEESCCGGGCHHHHHHHHHTTCEEEECSSEEEEECTTCCCBCCCEECCSTTSCCGGGHHHHHHHHHTSBSE
T ss_pred             HHCCCCCEEECCCCCHHHHHHHHHHHHHHCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEECCC
T ss_conf             22156865521677806778898876642313997377699997676544300256632234421145541222187361


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~ke~dr~~~~~~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~~DHRiAMa~aia~l~~~g~~~I~~~~~i~~SyP  400 (419)
T d1ejda_         321 GVITETIFENRFMHVPELIRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYE  400 (419)
T ss_dssp             EEEECCSCSSCCTHHHHHHHTTCEEEEETTEEEEECCSCCBCCEECCSSHHHHHHHHHHHHHSBEEEEECCTHHHHHHSS
T ss_pred             EEEEEECCCHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEECCCEEEECCCH
T ss_conf             67764023438789999996889799969999997999863761613838999999999981999499836137868734


Q ss_pred             ------------------C
Q ss_conf             ------------------9
Q 003496          278 ------------------V  278 (815)
Q Consensus       278 ------------------~  278 (815)
                                        .
T Consensus       401 ~F~~~l~~LGa~I~~~~~~  419 (419)
T d1ejda_         401 RIEDKLRALGANIERVKGE  419 (419)
T ss_dssp             SHHHHHHTTTCEEEEEECC
T ss_pred             HHHHHHHHCCCEEEEECCC
T ss_conf             0999999679899997179

>d2df7a1 b.121.4.9 (A:11-429) Birnavirus VP2 {Infectious bursal disease virus [TaxId: 10995]}

class: All beta proteins
fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
superfamily: Positive stranded ssRNA viruses
family: Birnaviridae-like VP
domain: Birnavirus VP2
species: Infectious bursal disease virus [TaxId: 10995]

Probab=100.00  E-value=0  Score=31665.13  Aligned_cols=1  Identities=100%  Similarity=0.769  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~ylksll~PetgpasIPDD~~~rH~l~~etstyNL~~~~sGsGllv~fp~~P~s~vGaHY~~~~~~~l~FDq~l~TsQ   80 (419)
T d2df7a1           1 IVPFIRSLLMPTTGPASIPDDTLEKHTLRSETSTYNLTVGDTGSGLIVFFPGFPGSIVGAHYTLQSNGNYKFDQMLLTAQ   80 (419)
T ss_dssp             CCHHHHHHHCGGGCCCCCCSSCCCCBEEEEEEEEEEEECCTTSCEEEEECTTCSSSEEEEEEEECTTSCEEEEEEEECSS
T ss_pred             CCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEHHHHHHHH
T ss_conf             91465554285678878971788877542033045369726885699991799875210278972788576465556667


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 dLkk~~nYgRliSr~~~i~SstLPaGvYAlnGT~Na~tf~GslSEv~~~sYn~lmS~ttN~~DKv~NvLV~~GVtVLsLP  160 (419)
T d2df7a1          81 NLPASYNYCRLVSRSLTVRSSTLPGGVYALNGTINAVTFQGSLSELTDVSYNGLMSATANINDKIGNVLVGEGVTVLSLP  160 (419)
T ss_dssp             CGGGTEEEEEEEEEEEEEEECCCCTTCCBCCCEEEEEEESSCGGGCSCCSTTGGGGSCSCGGGEEEEEETTTCEEEECCC
T ss_pred             HHHHHHCHHHHHCEEEEEEECCCCCEEEEECCEEEEEEEECCHHHHHCCCHHHHEECCCCHHHHHCCEEECCCEEEEECC
T ss_conf             66766333321002466651357743455246154589824667600246101002126802530789823864999757


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 TgfD~pYVRLgDetP~~gl~p~~~a~ct~a~~PR~Y~I~~a~~yq~~sq~q~gGtt~Tlfs~NiDavtSlsVtGdivFq~  240 (419)
T d2df7a1         161 TSYDLGYVRLGDPIPAIGLDPKMVATCDSSDRPRVYTITAADDYQFSSQYQSGGVTITLFSANIDAITSLSIGGELVFHT  240 (419)
T ss_dssp             SCSSCCCEECCEECCCCCSCTTCCCEECCCSSCEEEEEEEEEEEEEEEECCTTCEEEEEEEEEEEESSCEEEEEEEEEEC
T ss_pred             CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEE
T ss_conf             66788735647888765778765430365568733575367545547755678688898750001104267400699972


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~dati~~IG~DGt~vi~~avas~nGlt~G~dn~~pfnlviPT~eITqPITsIKLeivt~k~gg~ag~~~s~~~~  320 (419)
T d2df7a1         241 SVHGLALDATIYLIGFDGTTVITRAVASDNGLTTGIDNLMPFNLVIPTNEITQPITSIKLEIVTSKSGGQAGDQMSWSAS  320 (419)
T ss_dssp             SSSSEEEEEEEEEEETTSCEEEEEEEEEEEECCTTSCEEEEEEEEECGGGCCSCEEEEEEEEEEEETTCCTTCEEEEEEE
T ss_pred             CCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCC
T ss_conf             36651873799996326974788899706765356355443103236776775512789999952136754753222456


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 gs~svT~~gGN~PGvLRPvTlVAYE~vapgsilTVaGVSNyELIPNPeL~KN~~t~yG~~dP~~l~y~K~iLs~Re~L~i  400 (419)
T d2df7a1         321 GSLAVTIHGGNYPGALRPVTLVAYERVATGSVVTVAGVSNFELIPNPELAKNLVTEYGRFDPGAMNYTKLILSERERLGI  400 (419)
T ss_dssp             EEEEEEETTTTSTTSSCCEEEEEEESCCTTCEEEEEEEEEEEEEECHHHHTTCCCBCCCCCTTHHHHHHHHHHTHHHHTC
T ss_pred             CCEEEEECCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCEECCCHHHHHCCCCCCCCCCHHHCCHHHHHHCCHHHCCC
T ss_conf             64699965887778768658999840257746999602451324897897406332356583434288777434311486


Q ss_pred             ------------------C
Q ss_conf             ------------------9
Q 003496          278 ------------------V  278 (815)
Q Consensus       278 ------------------~  278 (815)
                                        -
T Consensus       401 rtvw~~~~Y~~~~~~f~e~  419 (419)
T d2df7a1         401 KTVWPTREYTDFREYFMEV  419 (419)
T ss_dssp             CSEEEHHHHHHHHHHHHHH
T ss_pred             EEEECHHHHHHHHHHHHCC
T ss_conf             3660277878999887439

>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Nitric oxide (NO) synthase oxygenase domain
superfamily: Nitric oxide (NO) synthase oxygenase domain
family: Nitric oxide (NO) synthase oxygenase domain
domain: Nitric oxide (NO) synthase oxygenase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=0  Score=31590.11  Aligned_cols=1  Identities=0%  Similarity=-1.589  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~kn~~~~~~~~dtlh~~~~~~~~C~~~~C~gs~m~p~~~~~~p~~~~~~e~ll~~A~~Fi~qyy~e~~~~~~~~~~   80 (418)
T d1om4a_           1 RFLKVKNWETDVVLTDTLHLKSTLETGCTEHICMGSIMLPSQHTRKPEDVRTKDQLFPLAKEFLDQYYSSIKRFGSKAHM   80 (418)
T ss_dssp             CCEEEEBTTTCCEEEECGGGGCCSCCSCCSSCBCTTCSCC-----------CHHHHHHHHHHHHHHHHHHTTCTTSHHHH
T ss_pred             CCEEEEECCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf             95245540478756320434167889987564366222453457888889987899999999999999863435868999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~Rl~ev~~eI~~tGtY~~T~~EL~~GAk~AWRNs~RCIGRi~W~~L~V~D~R~v~t~~~mfeal~~Hi~~ATN~G~Ir~~  160 (418)
T d1om4a_          81 DRLEEVNKEIESTSTYQLKDTELIYGAKHAWRNASRCVGRIQWSKLQVFDARDCTTAHGMFNYICNHVKYATNKGNLRSA  160 (418)
T ss_dssp             HHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHTCTTCTTGGGTTCCEEEECTTCCSHHHHHHHHHHHHHHHHGGGSCCCE
T ss_pred             HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             99999999997455620899999887899870454233500116571565678999899999999999997079987623


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ITVFpp~~~~~~~~RIwN~QLIrYAGY~~~dGsiiGDPa~vefT~~c~~lGW~~~~t~FDvLPLviq~~g~~p~~feiP~  240 (418)
T d1om4a_         161 ITIFPQRTDGKHDFRVWNSQLIRYAGYKQPDGSTLGDPANVQFTEICIQQGWKAPRGRFDVLPLLLQANGNDPELFQIPP  240 (418)
T ss_dssp             EEECCCCSSSSSCCEECSSBSSCBCEEECTTSCEEECGGGHHHHHHHHTTTCCCCCCTTCBCCEEEECTTCCCEEECCCG
T ss_pred             EEECCCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEECCH
T ss_conf             89737988899986565488886626568998764783137999999976898999987702089997899972574887


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 elvlEV~i~HP~~~wf~~LgLkWyavPaiSnM~L~iGGi~y~aaPFNGWYM~TEIgaRNl~D~~RYN~L~~VA~~mGLDT  320 (418)
T d1om4a_         241 ELVLEVPIRHPKFDWFKDLGLKWYGLPAVSNMLLEIGGLEFSACPFSGWYMGTEIGVRDYCDNSRYNILEEVAKKMDLDM  320 (418)
T ss_dssp             GGCCEEECCCSSCTTGGGGCCEEESCCCBCSCEEEETTEEESCCCEECCCBHHHHHTHHHHCTTTTCCHHHHHHHHTCCC
T ss_pred             HHEEEECCCCCCCHHHHHCCCCEEECCHHCCCEEEECCEEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             78246435598975477559837625011365232088855346745341123365415667565664899999849788


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~sLWkDrAlvElN~AVLhSF~~~gVtIvDHHtas~~F~~~~~~E~~~~r~~pgdW~WlvPP~Sgs~tpvfH~~~~n~  400 (418)
T d1om4a_         321 RKTSSLWKDQALVEINIAVLYSFQSDKVTIVDHHSATESFIKHMENEYRCRGGCPADWVWIVPPMSGSITPVFHQEMLNY  400 (418)
T ss_dssp             SCGGGCHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHSCCCCCHHHHSCSSSGGGSGGGGBCCCBC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHCC
T ss_conf             99740577889999999999899887964805278999999999999981899998852777888653441677765353


Q ss_pred             -----------------C
Q ss_conf             -----------------9
Q 003496          278 -----------------V  278 (815)
Q Consensus       278 -----------------~  278 (815)
                                       -
T Consensus       401 ~l~P~f~yq~~~w~th~w  418 (418)
T d1om4a_         401 RLTPSFEYQPDPWNTHVW  418 (418)
T ss_dssp             CCSSEEECCCCGGGTCCC
T ss_pred             CCCCCCCCCCCCCCCCCC
T ss_conf             147886557986446789

>d2gp4a2 d.334.1.1 (A:1-418) 6-phosphogluconate dehydratase EDD {Shewanella oneidensis [TaxId: 70863]}

class: Alpha and beta proteins (a+b)
fold: IlvD/EDD N-terminal domain-like
superfamily: IlvD/EDD N-terminal domain-like
family: lvD/EDD N-terminal domain-like
domain: 6-phosphogluconate dehydratase EDD
species: Shewanella oneidensis [TaxId: 70863]

Probab=100.00  E-value=0  Score=31584.31  Aligned_cols=1  Identities=0%  Similarity=-1.391  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~i~~vt~rI~~RS~~~r~~Yl~~i~~~~~~~~~r~~l~c~nlAh~~aa~~~~dk~~l~d~~kP~IGIvns~~d~~pc   80 (418)
T d2gp4a2           1 MHSVVQSVTDRIIARSKASREAYLAALNDARNHGVHRSSLSCGNLAHGFAACNPDDKNALRQLTKANIGIITAFNDMLSA   80 (418)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------------------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf             97179999999999708779999999999875488711135521777887068302556763179969998352346464


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 h~hl~~l~~~vK~gv~~~gg~~~~~~~~p~~cDGit~G~~GM~~SL~SRelIA~siE~~~~~~~~Dg~V~l~~CDK~vPG  160 (418)
T d2gp4a2          81 HQPYETYPDLLKKACQEVGSVAQVAGGVPAMCDGVTQGQPGMELSLLSREVIAMATAVGLSHNMFDGALLLGICDKIVPG  160 (418)
T ss_dssp             ---------CCC---CCCCEEEEECC-BC--CCCCCCSSSGGGGHHHHHHHHHHHHHHHHTTCCCSEEEEECCSTTTTHH
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHH
T ss_conf             24299999999999997178663567645534651378653013130022789899998624765617997338998768


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~lMaa~r~n~lPsI~v~gGpm~~G~~~~~~~~~~~~~~~G~i~~~el~~~E~~a~p~~GtC~~mgTANTm~~l~EalGl~  240 (418)
T d2gp4a2         161 LLIGALSFGHLPMLFVPAGPMKSGIPNKEKARIRQQFAQGKVDRAQLLEAEAQSYHSAGTCTFYGTANSNQLMLEVMGLQ  240 (418)
T ss_dssp             HHHHHHTTTTSCEEECCCCC-------------------CCTHHHHHHHTTSSCHHHHHHHHHCC-----CHHHHHTTCS
T ss_pred             HHHHHHHCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             99999843678779971577689746777725753032233569999999874668878663267798999999971567


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 LPGsa~vpa~~~~r~~~a~~ag~~~~~~~~~~~~~~~~~dIlt~~a~~NAi~~~~A~GGSTNavlHL~AIA~eaGi~l~l  320 (418)
T d2gp4a2         241 LPGSSFVNPDDPLREALNKMAAKQVCRLTELGTQYSPIGEVVNEKSIVNGIVALLATGGSTNLTMHIVAAARAAGIIVNW  320 (418)
T ss_dssp             CTTGGGSCTTCHHHHHHHHHHHHHHHHTSTTSSSCCCHHHHSSHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHTTCCCCH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHCCCCCCH
T ss_conf             52124788861899999998999999999851267897786199999711168760562675320629999654898989


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~dfd~is~~~P~L~~l~P~G~~~m~d~~~AGGvp~v~k~L~~~glLh~D~~TVtG~tl~e~l~~~~~~~~~i~~~~~p~~  400 (418)
T d2gp4a2         321 DDFSELSDAVPLLARVYPNGHADINHFHAAGGMAFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGELRWVDGPTV  400 (418)
T ss_dssp             HHHHHHHTTCCBCBCCGGGSSCCHHHHHHHTHHHHHHHHHHHHTCSCCCCEETTEECGGGGGEEEEEETTEEEEEECCSS
T ss_pred             HHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEECCCCCC
T ss_conf             99999857888544441598621889876069999999998788856999883886799997077766774000468777


Q ss_pred             -----------------C
Q ss_conf             -----------------9
Q 003496          278 -----------------V  278 (815)
Q Consensus       278 -----------------~  278 (815)
                                       .
T Consensus       401 ~~d~~VIrp~~~P~~~~G  418 (418)
T d2gp4a2         401 SLDTEVLTSVATPFQNNG  418 (418)
T ss_dssp             CSCTTTBCCSSSCSBSSC
T ss_pred             CCCCCEECCCCCCCCCCC
T ss_conf             899887576555779999

>d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: Isocitrate lyase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=0  Score=31580.81  Aligned_cols=1  Identities=0%  Similarity=0.769  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~w~~~pRw~~i~r~yta~dv~~lrgs~~~~~~~a~~~a~~Lr~lL~~~~~v~~~Ga~d~~~A~~~   80 (418)
T d1f61a_           1 ASVVGTPKSAEQIQQEWDTNPRWKDVTRTYSAEDVVALQGSVVEEHTLARRGAEVLWEQLHDLEWVNALGALTGNMAVQQ   80 (418)
T ss_dssp             CCCTTCCCCHHHHHHHHHHCGGGTTCCCSSCHHHHHHTSTTCCCCCHHHHHHHHHHHHHHHHSSCEEEEBCCSHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHH
T ss_conf             98456504599999998629882778799899999986688775425789999999999836997884144778999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~kaGf~aiY~SG~~vaa~~s~s~~g~PD~gl~~~~ev~~~v~~I~~~~~~~d~~~~~~~~~~~~~~~~PIIaDaDtGfG~  160 (418)
T d1f61a_          81 VRAGLKAIYLSGWQVAGDANLSGHTYPDQSLYPANSVPQVVRRINNALQRADQIAKIEGDTSVENWLAPIVADGEAGFGG  160 (418)
T ss_dssp             HHTTCSCEEECHHHHHHHCCTTCCCCCSSSCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCSCSCSSCCEEEECTTCSSS
T ss_pred             HHHCCCEEEECHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCC
T ss_conf             98199889854276523454556886665555167899999999988788999998740466433567768753333453


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~nv~rtvk~~i~AGaAgihiEDQ~~~~KkCGH~~GK~lvp~~e~~~ki~Aa~~a~d~~~~~~~iiARTDA~~a~~i~s~  240 (418)
T d1f61a_         161 ALNVYELQKALIAAGVAGSHWEDQLASEKKCGHLGGKVLIPTQQHIRTLTSARLAADVADVPTVVIARTDAEAATLITSD  240 (418)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEESBCGGGCBCSTTCBCEECCHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTTCCEESCS
T ss_pred             HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHCCCCCC
T ss_conf             78999999999983786899734677776556667766688999999999998766437998489997160232355333


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~d~~D~~~i~g~rt~eG~y~~~~g~e~AI~Ra~aya~~gd~i~~e~~~~~~ee~~~f~~~v~~~~~~~~l~~~~sPsf~w  320 (418)
T d1f61a_         241 VDERDQPFITGERTREGFYRTKNGIEPCIARAKAYAPFADLIWMETGTPDLEAARQFSEAVKAEYPDQMLAYNCSPSFNW  320 (418)
T ss_dssp             CSTTTGGGEEEEECTTSCEEECCSHHHHHHHHHHHGGGCSEEEECCSSCCHHHHHHHHHHHHTTCTTCEEEEECCSSSCH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCCC
T ss_conf             43233444455457664001457789999999963543671885057899999999986248873332035676567770


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~~~~~~~~~~eL~~~Gy~~~~i~la~~~a~~~a~~~la~~~~~~Gm~ay~elQ~re~~~~~~Gy~~~khQ~~vG~~  400 (418)
T d1f61a_         321 KKHLDDATIAKFQKELAAMGFKFQFITLAGFHALNYSMFDLAYGYAQNQMSAYVELQEREFAAEERGYTATKHQREVGAG  400 (418)
T ss_dssp             HHHSCHHHHHHHHHHHHHHTEEEEEETTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCCTTSHHHHTTHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHCCC
T ss_conf             11467766543399999609629996138999999999999999986676277877658888874698556401330532


Q ss_pred             -----------------C
Q ss_conf             -----------------9
Q 003496          278 -----------------V  278 (815)
Q Consensus       278 -----------------~  278 (815)
                                       -
T Consensus       401 y~D~~~~~~~~~~s~~a~  418 (418)
T d1f61a_         401 YFDRIATTVDPNSSTTAL  418 (418)
T ss_dssp             HHHHHHHHHCTTSCCCCC
T ss_pred             HHHHHHHHHCCCHHHHCC
T ss_conf             788889884787053139

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=100.00  E-value=0  Score=31577.28  Aligned_cols=1  Identities=0%  Similarity=-1.257  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~   80 (418)
T d2r5ea1           1 KFDLPKRYQGSTKSVWVEYIQLAAQYKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYS   80 (418)
T ss_dssp             CCCCCGGGTTCCCCHHHHHHHHHHHHCCEECSSSCCSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             98643464179988999999986589988716889999889999999999983899667678998788999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~g~~~~p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~  160 (418)
T d2r5ea1          81 QLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLD  160 (418)
T ss_dssp             HHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGEECC
T ss_pred             HHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf             98599999641589917973321100222013333200122345004678987498699997214556663055666665


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~  240 (418)
T d2r5ea1         161 NNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIG  240 (418)
T ss_dssp             HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEE
T ss_pred             HHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             88776654114441241786865443331888777753442178122102102120157876531003655543145665


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 S~SK~~~~pGlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~  320 (418)
T d2r5ea1         241 SAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASF  320 (418)
T ss_dssp             EHHHHTTCGGGCCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             57754268876445323431133444211222333345620210122233222334453256788888988764667766


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~~~  400 (418)
T d2r5ea1         321 LAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKK  400 (418)
T ss_dssp             HHHTTCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECCSC
T ss_pred             HHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCCCCEEEEEECCC
T ss_conf             76428701379812499787223565111012034467899999999878999968256478877667899899995699


Q ss_pred             -----------------C
Q ss_conf             -----------------9
Q 003496          278 -----------------V  278 (815)
Q Consensus       278 -----------------~  278 (815)
                                       .
T Consensus       401 ~e~l~~a~~rl~~~lg~~  418 (418)
T d2r5ea1         401 DENLQKAAEILRKWKGSS  418 (418)
T ss_dssp             HHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHCCC
T ss_conf             999999999999987359

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=31575.61  Aligned_cols=1  Identities=0%  Similarity=-1.423  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~r~~~~~~~~~~~~~~~~~~~dvI~l~~G~p~~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~   80 (418)
T d1w7la_           1 QLQARRLDGIDYNPWVEFVKLASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGEL   80 (418)
T ss_dssp             CCSCGGGTTCCCCTHHHHHHHHHTSCCEECCCCSCSSCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             97670002799899999999747899788889889998899999999999857974468899867899999999999998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~g~~~~~~~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d  160 (418)
T d1w7la_          81 LGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLD  160 (418)
T ss_dssp             HTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGEECC
T ss_pred             HCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             58998810115642585799999998622677615304556600689999749874014566542223443224575300


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~  240 (418)
T d1w7la_         161 PMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIG  240 (418)
T ss_dssp             HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEE
T ss_pred             HHHHHCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCEEC
T ss_conf             55430223566531112676776564333889999999998629871155666775158989989777165445552001


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 S~SK~~~~pG~RvG~~v~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~  320 (418)
T d1w7la_         241 SAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRS  320 (418)
T ss_dssp             EHHHHTTCGGGCCEEEECCHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             56764268877434322320255553023322322232025677887765222333344332223102333200012345


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~~  400 (418)
T d1w7la_         321 LQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK  400 (418)
T ss_dssp             HHTTTCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC
T ss_pred             HHHCCCCCCCCCCEEEEEEECCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCCCCEEEEEECC
T ss_conf             66438812379820499887710002320101345553589999999997999997454426787667779979999738


Q ss_pred             -----------------C
Q ss_conf             -----------------9
Q 003496          278 -----------------V  278 (815)
Q Consensus       278 -----------------~  278 (815)
                                       .
T Consensus       401 ~~~~l~~a~~rl~~~~~~  418 (418)
T d1w7la_         401 DEATLQAMDEKLRKWKVE  418 (418)
T ss_dssp             CHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHHHCC
T ss_conf             999999999999998667

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=31511.49  Aligned_cols=1  Identities=0%  Similarity=-0.262  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 m~~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~   80 (417)
T d1pv7a_           1 MYYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWII   80 (417)
T ss_dssp             CHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             98665715899999999999999999999999999802999999999999999999999999999999817539999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (417)
T d1pv7a_          81 TGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGI  160 (417)
T ss_dssp             HHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             99999999988763014678889999877650122233202211222344113456777788765403554455300012


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (417)
T d1pv7a_         161 MFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFD  240 (417)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             33456653211003489999999999842332102322002320233222211001222222110246688999887641


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (417)
T d1pv7a_         241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKT  320 (417)
T ss_dssp             HHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf             22222222223333210000011222223322221024444200122210003657888886520113322111457899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l  400 (417)
T d1pv7a_         321 LHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTL  400 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999998798489999999999999999999999999999997989999999999999999999753


Q ss_pred             ----------------C
Q ss_conf             ----------------9
Q 003496          278 ----------------V  278 (815)
Q Consensus       278 ----------------~  278 (815)
                                      .
T Consensus       401 ~~~~~~~~~r~~~~e~a  417 (417)
T d1pv7a_         401 SGPGPLSLLRRQVNEVA  417 (417)
T ss_dssp             CCSSCTTHHHHHHHHHC
T ss_pred             CCCCCCCHHHHHHCCCC
T ss_conf             27785436675323379

>d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Hypothetical protein YfdW
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=31507.06  Aligned_cols=1  Identities=0%  Similarity=-1.125  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 m~~PL~GirVld~~~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~   80 (417)
T d1q7ea_           1 LSTPLQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGK   80 (417)
T ss_dssp             CCCTTTTCEEEECCCTTHHHHHHHHHHHTTCEEEEEECTTTCCGGGTTTCSSTTSCCHHHHTTCTTCEEEECCTTSHHHH
T ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHCCCCCCCCCCCHHHHHHCCCCEEEEEECCCHHHH
T ss_conf             99898999899847704899999999983993999898999871210488898985188897089984999769398899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~Li~~aDv~i~n~~pg~~~rlGl~~~~l~~~nP~lI~~sisgfG~~GP~~~~~~~D~~~qA~sG~~~~~g~~~~~P  160 (417)
T d1q7ea_          81 EVMEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFGSIKGFDECSPYVNVKAYENVAQAAGGAASTTGFWDGPP  160 (417)
T ss_dssp             HHHHHHHHHCSEEEECCCC-------CCHHHHHHHCTTCEEEEEESSCTTSTTTTSCCCHHHHHHHTTHHHHSSCTTSCC
T ss_pred             HHHHHHHHCCCCCEECCCCCCHHHCCCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999984086407546887175528889999866878788763222454344565334543333223201126656798


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~D~~~g~~aa~ailaAL~~R~~tG~Gq~VdvSl~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  240 (417)
T d1q7ea_         161 LVSAAALGDSNTGMHLLIGLLAALLHREKTGRGQRVTMSMQDAVLNLCRVKLRDQQRLDKLGYLEEYPQYPNGTFGDAVP  240 (417)
T ss_dssp             CCCSSCTTTHHHHHHHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHTHHHHHHHHHHHHHSCCTTSTTTTTSCCCSSCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             52224431679999999999999999985499739997789999986689998554320002222244344655677788


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 r~~~~~~~~~p~~~~~~~~~~t~dg~i~~~~~~~~~w~~l~~~lg~~dl~~d~~~~~~~~r~~~~~~l~~~i~~~~~~~t  320 (417)
T d1q7ea_         241 RGGNAGGGGQPGWILKCKGWETDPNAYIYFTIQEQNWENTCKAIGKPEWITDPAYSTAHARQPHIFDIFAEIEKYTVTID  320 (417)
T ss_dssp             CCTTCCSSSSCEEEEECTTTTTCTTCEEEEECCGGGHHHHHHHTTCGGGGTCTTTSSHHHHGGGHHHHHHHHHHHHTTSC
T ss_pred             CCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             66656888886430133015517983999732312556899985885101332000000122119999877765211333


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~e~~~~l~~~~ip~~pV~~~~e~~~dpq~~~r~~~~~~~~p~~g~~~~~g~p~~~s~~~~~~~~aP~lGeht~eIL~el  400 (417)
T d1q7ea_         321 KHEAVAYLTQFDIPCAPVLSMKEISLDPSLRQSGSVVEVEQPLRGKYLTVGCPMKFSAFTPDIKAAPLLGEHTAAVLQEL  400 (417)
T ss_dssp             HHHHHHHHGGGTCCEEECCCHHHHHHCHHHHHTTSEEEEEETTTEEEEEECCSSCCSSCCCCCCCCCCTTTTHHHHHHHT
T ss_pred             CCHHEEEEECCCEEEEECCCHHHHHHCHHHHHCCCEEEEECCCCCCEEEECCCEECCCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf             10110123237702674488999976989897299999666998823644788604899999999999984599999986


Q ss_pred             ----------------C
Q ss_conf             ----------------9
Q 003496          278 ----------------V  278 (815)
Q Consensus       278 ----------------~  278 (815)
                                      .
T Consensus       401 G~s~~~I~~L~~~gvI~  417 (417)
T d1q7ea_         401 GYSDDEIAAMKQNHAIE  417 (417)
T ss_dssp             TCCHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHCCCCC
T ss_conf             99999999999781939

>d3bona1 d.92.1.7 (A:3-419) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Clostridium neurotoxins, catalytic domain
domain: Botulinum neurotoxin
species: Clostridium botulinum, serotype A [TaxId: 1491]

Probab=100.00  E-value=0  Score=31506.39  Aligned_cols=1  Identities=0%  Similarity=-0.228  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~nnnFNyndPVnn~~Ily~~~p~~~~~~~~KAF~I~~nIWIiPER~~~~~~~~~d~~~p~~~~~~~~~yYDpnyLsTD~   80 (417)
T d3bona1           1 FVNKQFNYKDPVNGVDIAYIKIPNVGQMQPVKAFKIHNKIWVIPERDTFTNPEEGDLNPPPEAKQVPVSYYDSTYLSTDN   80 (417)
T ss_dssp             CCSCCCCTTSCCCSSSEEEEECC--CCCCCEEEEEEETTEEEEEEECCSSCTTCCSCSCC----CCSSCCCCTTTTCSHH
T ss_pred             CCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCEEECCCCCCCCCCCCCCCCCCHHHCCCCCCEECCCCCCCCH
T ss_conf             96677777898899718999567788776034477426768830343567888666689701025876412753245613


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 EKD~FLk~~IKLf~RINsn~~G~~LL~~I~~aiPflG~s~~~~~~~~~~~~svni~~~~g~~~~~~~NlvIfGPgpnI~e  160 (417)
T d3bona1          81 EKDNYLKGVTKLFERIYSTDLGRMLLTSIVRGIPFWGGSTIDTELKVIDTNCINVIQPDGSYRSEELNLVIIGPSADIIQ  160 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHCCCCCBCCSSTTEEBCCGGGEEEEECTTSCEEEEECSEEEEECCSSTTC
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCEEEECCCCCCCC
T ss_conf             78899999999999854857899999999726877789988711256641157764489854554215899889863145


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 n~~~~~~~~~~n~s~~GfGsi~~i~FsPe~~~~f~~~~~~~~~~~~~~~~F~~DPAl~L~heLIhsLh~LYGik~~~~~~  240 (417)
T d3bona1         161 FECKSFGHEVLNLTRNGYGSTQYIRFSPDFTFGFEESLEVDTNPLLGAGKFATDPAVTLAHELIHAGHRLYGIAINPNRV  240 (417)
T ss_dssp             CEEECCCCSSCCTTTSSCCCCEEEECCTTEEEEECSSHHHHTCTTSCCCCEECCHHHHHHHHHHHHHHHHTTCCCCTTCE
T ss_pred             CCCEEECCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf             54323034457733047650589997764377604533455555545343542889999999999988760756788741


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~i~~eEl~tFGG~D~~iI~~~~~~~~~~k~l~~yk~Ia~rl~kvn~~~~~~~~l~~yK~~F~~KY~  320 (417)
T d3bona1         241 FKVNTNAYYEMSGLEVSFEELRTFGGHDAKFIDSLQENEFRLYYYNKFKDIASTLNKAKSIVGTTASLQYMKNVFKEKYL  320 (417)
T ss_dssp             EECCSCHHHHHTTCEEEHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHCCEESSSSSCHHHHHHHHHHHHT
T ss_pred             EECCCCCHHHHCCCCCCHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             32121122343246645777765169781105846788899999999999999987525678885236999999988744


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 l~~d~~g~~~vn~~kF~~~yk~L~~~fTe~~~a~~fkvk~Rk~Y~~~~~~~~~~nlldd~iYtI~eGFNi~~~nl~~~~~  400 (417)
T d3bona1         321 LSEDTSGKFSVDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNLRNTNLAANFN  400 (417)
T ss_dssp             CEECTTCCEECCHHHHHHHHHHHHHTSCHHHHHHHHTCCCCSCSSSCCCEEEECCCSSTTTCBTTTBTSCTTSTTSSTTG
T ss_pred             CCCCCCCCEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCCCCEECCCCCCCCEECCCCCCCCCCCCCCCCC
T ss_conf             65278885895389999999999711588888766501434420000244100144676531314552146665345557


Q ss_pred             ----------------C
Q ss_conf             ----------------9
Q 003496          278 ----------------V  278 (815)
Q Consensus       278 ----------------~  278 (815)
                                      -
T Consensus       401 GQN~~iN~~~~~~~~~~  417 (417)
T d3bona1         401 GQNTEINNMNFTKLKNF  417 (417)
T ss_dssp             GGBTTTTGGGCEEEEEC
T ss_pred             CCCHHHCHHHHHHHCCC
T ss_conf             76522153442442069

>d1w6ga1 b.30.2.1 (A:212-628) Copper amine oxidase, domain 3 {Arthrobacter globiformis [TaxId: 1665]}

class: All beta proteins
fold: Supersandwich
superfamily: Amine oxidase catalytic domain
family: Amine oxidase catalytic domain
domain: Copper amine oxidase, domain 3
species: Arthrobacter globiformis [TaxId: 1665]

Probab=100.00  E-value=0  Score=31507.18  Aligned_cols=1  Identities=0%  Similarity=-1.757  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      =                                                                               
T Consensus         1 P~r~~~kp~~i~QP~G~~f~v~~g~~V~w~~W~f~~~f~~r~Gl~l~dv~~~~g~r~r~i~Y~lsl~E~~vpY~~~~p~~   80 (417)
T d1w6ga1           1 PLRTTQKPISITQPEGPSFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDRLRPIINRASIAEMVVPYGDPSPIR   80 (417)
T ss_dssp             SCCCCCCCCCCCCTTCCSCEEETTTEEEETTEEEEEEEETTTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEBCCCCTTT
T ss_pred             CCCCCCCCCEEECCCCCCEEECCCCEEEECCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEEECCEEEEEECCCCCCHH
T ss_conf             98888998305689999879778988997687899970787661999999818984766899801236798788998356


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~D~ge~G~G~~a~~L~~G~DCp~~a~y~D~~~~~~~g~p~~~~naiCifE~d~G~~~rh~~~~~~~~~~~r~~~L  160 (417)
T d1w6ga1          81 SWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGILAKHSDLWSGINYTRRNRRM  160 (417)
T ss_dssp             TTCEEECCCCCCGGGGBCCCCBTTTBCSSCEEECCEEECTTSCEEECTTCEEEEEEEEEEEEEEECTTTCCEEEEEEEEE
T ss_pred             HHCEEEECCCCCHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEEEEE
T ss_conf             21016733452633412346558999866768237872688998861653788624788227888704781368750069


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 Vvr~i~TvgNYdYi~~~~F~~dGsIe~~v~aTG~l~~~~~~~~~~~~g~~v~~~~~g~~H~H~f~~RlD~dIdG~~Nsv~  240 (417)
T d1w6ga1         161 VISFFTTIGNYDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGGSDNISQLAPGLGAPFHQHIFSARLDMAIDGFTNRVE  240 (417)
T ss_dssp             EEEEEEEETTEEEEEEEEEETTSCEEEEEEEEECCCCEECCTTCCSSEEEEETTEEEECEEEEEEEEEEECTTSSCBEEE
T ss_pred             EEEEEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCCCCCCCCCEECCCCCCCCCCCEEEEEECCCCCCCCCEEE
T ss_conf             99999973202089999994696799999988999871347888986437646756555321357774355479976699


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~E~~a~~~~~~~~~r~~~vvN~~k~N~~G~~~gYkl~p~~~~~~l~~~~s~~~  320 (417)
T d1w6ga1         241 EEDVVRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIA  320 (417)
T ss_dssp             EEEEEECCSBTTBTTSCCEEEEEEEECBGGGCEECCCGGGTCEEEEEEEEEECTTSCEEEEEEEECCCCCCCSCTTSHHH
T ss_pred             EEEEEEECCCCCCCCCCEEEEEEEEEEEHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHH
T ss_conf             99617842797665454789999988762563220266686489998799858899944599855887764579876011


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~ra~fa~~~lwVT~y~d~E~~aag~y~nq~~~~~~l~~~~~~~e~I~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~gf~L  400 (417)
T d1w6ga1         321 RRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKL  400 (417)
T ss_dssp             HHTGGGGSSEEEEECCTTCCCTTCSCCBTCCSSSSHHHHHTTCCBCTTBCEEEEEEEEEEECCCGGGSSSEEEEEEEEEE
T ss_pred             HCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCEEEEEEE
T ss_conf             02322106378856877662677777447789998467510899423786799995784248985447997620577999


Q ss_pred             ----------------C
Q ss_conf             ----------------9
Q 003496          278 ----------------V  278 (815)
Q Consensus       278 ----------------~  278 (815)
                                      +
T Consensus       401 ~P~nFF~~nPald~p~s  417 (417)
T d1w6ga1         401 RPEGFFDRSPVLDVPAN  417 (417)
T ss_dssp             EESSCSSSCTTTTCCCC
T ss_pred             ECCCCCCCCCCCCCCCC
T ss_conf             87877899986678999

>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: YbiU-like
domain: Hypothetical protein YbiU
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=0  Score=31504.98  Aligned_cols=1  Identities=0%  Similarity=0.869  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~p~dl~~~i~~~K~~Lr~~~~~~~~~f~~l~~~i~~ev~eI~~l~~~G~~iIPeI~F~dI~~~~~~~~~~~~I   80 (417)
T d2csga1           1 TPFTHETLPADPKAAIRQMKQALRAQIGDVQAVFDRLSATIAARVAEINDLKAQGQPVWPIIPFSELAMGNISDATRAEV   80 (417)
T ss_dssp             CTTCCSSCCSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCBCCHHHHHTTCCCHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCCCCCHHHHHHH
T ss_conf             99876678898389999999999965678999999999999999999999996199985065589952678998999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 krrG~vVIRnV~p~e~a~~w~~~l~~Yle~n~~~~~~~~~~d~~f~~lp~~~pqiy~lyws~~q~~aR~~p~~~~~~~~l  160 (417)
T d2csga1          81 KRRGCAVIKGHFPREQALAWDQSMLDYLDKNHFDEVYKGPGDNFFGTLSASRPEIYPVYWSQAQMQARQSEEMALAQSFL  160 (417)
T ss_dssp             HHHSEEEETTSSCHHHHHHHHHHHHHHHHHTTHHHHCCCCCCCTTTTSSSCCCSSCCCCCBHHHHHHHHCHHHHHHHHHH
T ss_pred             HHCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHCCHHHHHHHHHH
T ss_conf             86188998887899999999999999998286420036864310012355677744242689999874495899999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~lw~~~~~~~~~~~~~~~l~y~DR~r~r~Pg~~~~~l~pH~D~Gs~erW~d~~y~~~y~~if~g~we~ydPw~~~~R~~  240 (417)
T d2csga1         161 NRLWQVEHDGKRWFNPDISIIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQQVFASVFNGNVEQYDPWNAAHRTD  240 (417)
T ss_dssp             HTTSBCCSSSSCSSEEEEECCCCCCEECCCTTCCBCCEEEEECSCSTHHHHCHHHHHHTHHHHTSCGGGCCTTBCTTGGG
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             85202368866412577743045503137999876786755689850103563125688887558842279876423320


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~l~~~~~~cs~FR~fQGwlaLs~~~p~dGtL~v~P~~~~~ay~llrpf~~d~~~~~~~g~~pg~~~~~~~~~h~~l~  320 (417)
T d2csga1         241 VEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLLHVVPIPEAMAYILLRPLLDDVPEDELCGVAPGRVLPISEQWHPLLM  320 (417)
T ss_dssp             CCCCCCTTCCCCCSCCSEEEEEESSCBCTTSSCEEECCCGGGHHHHHHGGGSTTSCTTCCTTCCTTSCEECCTTTCHHHH
T ss_pred             CHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf             00034478765414778887752366788887379963403577887240125556655677776655545633315650


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~v~ip~~~pGD~V~Wh~d~iH~v~~~~~g~~~s~V~Yi~~~P~~~~N~~yl~~qr~aF~~g~~ppdFp~~~~E~~~~g  400 (417)
T d2csga1         321 AALTSIPPLEAGDSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYARKVKAALETGASPGDFPREDYETTWEG  400 (417)
T ss_dssp             TTCEECCCBCTTCEEEEETTCCEEECCBSSCSSCCCEEECCBCEESHHHHHHHHHHHHHHHHTCCCTTSCSCCGGGSCSS
T ss_pred             CCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             86155245688887887078753446678999865389842788846559999999999975999877789987543356


Q ss_pred             ----------------C
Q ss_conf             ----------------9
Q 003496          278 ----------------V  278 (815)
Q Consensus       278 ----------------~  278 (815)
                                      -
T Consensus       401 r~~~~~ls~~G~r~mGL  417 (417)
T d2csga1         401 RFTLRDLNIHGKRALGI  417 (417)
T ss_dssp             BCCGGGCCHHHHHHTTC
T ss_pred             CCCHHHCCHHHHHHCCC
T ss_conf             88946528999986289

>d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=0  Score=31504.02  Aligned_cols=1  Identities=0%  Similarity=-1.158  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~n~~ti~d~~d~~gK~VllRvD~NvPi~~g~i~dd~RI~~~~pTI~~l~~~~a~kvil~sH~GRP~g~~~~~~SL~   80 (417)
T d1ltka_           1 HHHLGNKLSISDLKDIKNKKVLVRVDFNVPIENGIIKDTNRITATLPTINHLKKEGASKIILISHCGRPDGLRNEKYTLK   80 (417)
T ss_dssp             CCCSSSCCBSSSCCCCTTCEEEEEECCCCCEETTEESCTHHHHHTHHHHHHHHTTCCSEEEEECCCSCCTTSCCGGGCSH
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHH
T ss_conf             97444675023111258998999943477654993896889999999999999879985999847999999889875879


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~a~~L~~~l~~~V~f~~d~~g~~~~~~i~~l~~g~IlLLENvRF~~eE~~~~~~~~~~~~~~~~~n~~~f~k~LA~laD  160 (417)
T d1ltka_          81 PVAETLKGLLGEEVLFLNDCVGKEVEDKINAAKENSVILLENLRFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLAD  160 (417)
T ss_dssp             HHHHHHHHHHTSCCEECSCSSSHHHHHHHHSSCTTEEEECCCGGGSHHHHSEEECTTCCEEECCHHHHHHHHHHHHTSCS
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCEECCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHCCC
T ss_conf             99999999868465556553202245430247865378740021021012356432221000122307999999860385


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 vyVNDAF~~aHR~haS~vgi~~~~~~aG~L~ekEl~~L~~~l~~~~kP~vaIlGGaKvsdKi~vi~~L~~k~D~iiigG~  240 (417)
T d1ltka_         161 VFINDAFGTAHRAHSSMVGVKLNVKASGFLMKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGG  240 (417)
T ss_dssp             EEEEECTTSCSSCCHHHHCCCCSEEEECHHHHHHHHHHHHHHTSCCSSEEEEEECSCSGGGHHHHHHHHTTCSEEEEESS
T ss_pred             EEEECCHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCEEEEEHH
T ss_conf             89963531231047632312120112368999999999999854566736998567744269999878865111663036


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 mantfL~~a~g~~ig~sl~e~~~~~~~~~i~~~a~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~  320 (417)
T d1ltka_         241 MAYTFKKVLNNMKIGTSLFDEAGSKIVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPK  320 (417)
T ss_dssp             HHHHHHHHHHCCCCTTSCCCTTGGGTHHHHHHHHHHTTCEEECCSEEEEESSSSSSSCEEEEETTTCCCTTCEEEEECHH
T ss_pred             HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCH
T ss_conf             67889886148766753103567899999999998639961002322430234567643312333567753444411511


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 Ti~~~~~~I~~aktI~WNGP~GvfE~~~F~~GT~~l~~~i~~~t~~~~~sivGGGdT~aai~~~g~~~~~~hvSTGGGA~  400 (417)
T d1ltka_         321 SIENYKDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVVEVTKKGAITIVGGGDTASLVEQQNKKNEISHVSTGGGAS  400 (417)
T ss_dssp             HHHHHHHHHHTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHTTCEEEECCSTTHHHHHHHTCGGGSSEECCCSHHH
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCEEEECCHHHH
T ss_conf             12679998646877999898344446624278999999999883179979995789999999639746880897578999


Q ss_pred             ----------------C
Q ss_conf             ----------------9
Q 003496          278 ----------------V  278 (815)
Q Consensus       278 ----------------~  278 (815)
                                      .
T Consensus       401 Le~L~G~~LPgieaL~~  417 (417)
T d1ltka_         401 LELLEGKELPGVLALSN  417 (417)
T ss_dssp             HHHHTTCCCHHHHTSCC
T ss_pred             HHHHCCCCCCCEECCCC
T ss_conf             99987999762001249

>d1gff1_ b.121.5.1 (1:) Microvirus capsid proteins {Bacteriophage G4 [TaxId: 10843]}

class: All beta proteins
fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
superfamily: ssDNA viruses
family: Microviridae-like VP
domain: Microvirus capsid proteins
species: Bacteriophage G4 [TaxId: 10843]

Probab=100.00  E-value=0  Score=31503.76  Aligned_cols=1  Identities=0%  Similarity=-0.327  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~DlsH~~~~t~~~G~L~PI~~~eVLPGDtf~l~~~~f~Rlat~~~pvmdn~~~d~ffFfVP~RlvW~dnWekF~g~~~   80 (417)
T d1gff1_           1 VPHDLSHLVFEAGKIGRLKTISWTPVVAGDSFECDMVGAIRLSPLRRGLAVDSRVDIFSFYIPHRHIYGQQWINFMKDGV   80 (417)
T ss_dssp             CEECCCEEEEEEECSSBCEEEEEEEECTTCEEEEEEEEEEEECCBSSSCCSCEEEEEEEEEEESHHHHTHHHHHHHHHGG
T ss_pred             CCCCCCCHHHHCCCCCEEEEEEECCCCCCCEEEECHHHHHCCCCCCCHHHHHEEEEEEEEECCEEEEEHHHHHHHHCCCC
T ss_conf             98554500110455650678775142589755644123201266532211210667899852411354125899756878


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 np~~vP~vt~~~g~~~~dYlG~P~~~~~~~~~l~~rAYn~I~NewfRd~nl~ds~~v~~~dgpdd~a~y~lr~~~~~dyf  160 (417)
T d1gff1_          81 NASPLPPVTCSSGWDSAAYLGTIPSSTLKVPKFLHQGYLNIYNNYFKPPWSDDLTYANPSNMPSEDYKWGVRVANLKSIW  160 (417)
T ss_dssp             GCCCCCCEECCSSTTSSGGGSSCCCTTSEECHHHHHHHHHHHHHHTSCTTSCCCCCSSGGGSCTTTTTTCCBCBCCCCST
T ss_pred             CCCCCCCEECCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCCC
T ss_conf             98878706458874387618888888732102478999999997713734355335147778875102222201101310


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 Ts~LP~~~~~s~~~g~~~~s~d~~gL~~a~a~ti~~lr~a~flQr~~Ei~argG~r~~~~v~~~d~rlqr~eylggg~~~  240 (417)
T d1gff1_         161 TAPLPPDTRTSENMTTGTSTIDIMGLQAAYAKLHTEQERDYFMTRYRDIMKEFGGHTSYDGDNRPLLLMRSEFWASGYDV  240 (417)
T ss_dssp             TSCCCTTCCSCCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHTTTCCCCTTTTTCCEEEEEEEEEECCEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCCC
T ss_conf             13589998877556888664470435666667899999999999999999734983554576827765214765366422


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~Tdqt~lg~~sg~g~~~~~~~v~~~~~~EHG~I~~L~~vr~~~t~~q~~~~~~~~~d~~~p~fa~Dp~l~geqP~~n~e  320 (417)
T d1gff1_         241 DGTDQSSLGQFSGRVQQTFNHKVPRFYVPEHGVIMTLAVTRFPPTHEMEMHYLVGKENLTYTDIACDPALMANLPPREVS  320 (417)
T ss_dssp             ECCSTTTTTCEEEECEEEEEEEEEEEECCSSEEEEEEEEEECCCCBTTBCCHHHHSSSCCHHHHSCCHHHHTTSCCEEEE
T ss_pred             CCCCCCCHHHHCCCEEEECCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHCCCCCCCCHHHCCCHHHHCCCCCCCCC
T ss_conf             46653112331032487215633553245541899999853786101045541562001452330680110347742323


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 i~~~~~s~d~~v~Gy~~r~~~YR~~p~~V~g~f~sLd~W~~~~~~psl~~~~~v~v~~~~~D~~f~s~~~~q~~~~~~fn  400 (417)
T d1gff1_         321 LKEFFHSSPDSAKFKIAEGQWYRTQPDRVAFPYNALDGFPFYSALPSTDLKDRVLVNTNNYDEIFQSMQLAHWNMQTKFN  400 (417)
T ss_dssp             TTTTBSSCCTTCEEEECTTGGGSCCCCCCCTTTTTCTTCCSBCSCCCSSTGGGTBCCGGGGGGGBSSCSSCSEEEEEEEE
T ss_pred             HHHHCCCCCCCEEECCHHHHHHHCCCHHCCCCCCCCCCCEEECCCCCCCHHHCEEECCCCCCHHHHCCCHHHHHEEEEEE
T ss_conf             54404778864014012045552472010200004564132114889984460152687503666137505500114775


Q ss_pred             ----------------C
Q ss_conf             ----------------9
Q 003496          278 ----------------V  278 (815)
Q Consensus       278 ----------------~  278 (815)
                                      +
T Consensus       401 ~~v~R~mPt~~~~i~~~  417 (417)
T d1gff1_         401 INVYRHMPTTRDSIMTS  417 (417)
T ss_dssp             EEEECCCCCHHHHSCCC
T ss_pred             EEEEECCCCCCCCCCCC
T ss_conf             67860489854332469

>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial beta-amylase
species: Bacillus cereus [TaxId: 1396]

Probab=100.00  E-value=0  Score=31499.06  Aligned_cols=1  Identities=100%  Similarity=1.300  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~v~VmlPLd~v~~~~~~~~~~~~L~~LK~aGV~gV~vdVwWGivE~~~Pg~Ydws~yd~l~~mv~~~GL   80 (417)
T d1vema2           1 AVNGKGMNPDYKAYLMAPLKKIPEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGM   80 (417)
T ss_dssp             CGGGCCCCTTCEEEEECCSSCGGGTSCHHHHHHHHHHHHHTTEEEEEEEEEHHHHTCSSTTCCCCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             98887788995389986622245667889999999999983997899933424310589983570899999999998698


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 Ki~vvmsfH~cGgnvgd~~ti~lP~Wv~e~~~~pDi~~tDr~G~r~~E~LS~~~d~t~~~~y~~~~~sF~~~f~~~~~~I  160 (417)
T d1vema2          81 KMIPIISTHQCGGNVGDDCNVPIPSWVWNQKSDDSLYFKSETGTVNKETLNPLASDVIRKEYGELYTAFAAAMKPYKDVI  160 (417)
T ss_dssp             EEEEEEECSCBSSSTTCCCCBCCCGGGGGGCSSSCSSEECTTCCEECSSCCTTCHHHHHHHHHHHHHHHHHHTGGGGGGB
T ss_pred             EEEEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             28999874235787788615688888870554888167768898883703766698701004167887999987740047


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~ei~vglGp~GELRYPsyp~~~gW~~pg~GefqCYd~~~~~~fr~wl~~ky~al~aln~aWG~~~~~~~~~~~p~~~~ff  240 (417)
T d1vema2         161 AKIYLSGGPAGELRYPSYTTSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAILPPSDGEQF  240 (417)
T ss_dssp             CCEEECCSGGGBSSCCCCCTTTTCCTTSCCCCCCCSHHHHHHHHHHHHHHHSSHHHHHHHHTCCCSSGGGCCSCSCHHHH
T ss_pred             HHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             99986057420003788810015657998866578999999999999860665632235228999754576778888766


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~g~~s~YG~fFL~WYs~~L~~Hgdrvl~~A~~~F~~~~~v~l~~Kv~giHWwy~~~t~shaaElTAGydgY~~i~~~~  320 (417)
T d1vema2         241 LMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEKPAGYNDYSHLLDAF  320 (417)
T ss_dssp             HHTGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEEECCCCTTTTCSSSTTTTHHHHTCSCHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHH
T ss_conf             67983533335589999999999999999999985189877279999465033689999874154405855779999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~r~~~~l~ftc~em~d~~~~~~~s~Pe~Lv~qv~~aa~~~gv~~~gENAl~~~d~~~~~~i~~~~~~~~~~~fTylRm~~  400 (417)
T d1vema2         321 KSAKLDVTFTCLEMTDKGSYPEYSMPKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYNFAGFTLLRYQD  400 (417)
T ss_dssp             HHHTCEEEESCCSCCCCCCTTTCCCHHHHHHHHHHHHHHHTCCEEEECSSCCCSHHHHHHHHHHHHHTTCSEEEESCHHH
T ss_pred             HHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCH
T ss_conf             86697598761244568899655797999999999999829936510053014867999999971127876157975656


Q ss_pred             ----------------C
Q ss_conf             ----------------9
Q 003496          278 ----------------V  278 (815)
Q Consensus       278 ----------------~  278 (815)
                                      -
T Consensus       401 ~l~~~~n~~~F~~fv~~  417 (417)
T d1vema2         401 VMYNNSLMGKFKDLLGV  417 (417)
T ss_dssp             HHTCHHHHHHHHHHTSC
T ss_pred             HHCCCCCHHHHHHHHCC
T ss_conf             55796428889887439

>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Nitric oxide (NO) synthase oxygenase domain
superfamily: Nitric oxide (NO) synthase oxygenase domain
family: Nitric oxide (NO) synthase oxygenase domain
domain: Nitric oxide (NO) synthase oxygenase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=0  Score=31436.19  Aligned_cols=1  Identities=0%  Similarity=-1.522  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~p~~~~~kn~~~~~~~~dtlh~~~~~~~~C~~~~C~gs~m~~~~~~~~p~~~~~~~e~ll~eA~~Fi~q~y~e~~~~~~~   80 (416)
T d1q2oa_           1 GPKFPRVKNWELGSITYDTLCAQSQQDGPCTPRRCLGSLVLPRKLQTRPSPGPPPAEQLLSQARDFINQYYSSIKRSGSQ   80 (416)
T ss_dssp             CCSSCEEEBTTTCCEEECCGGGGCCBCCSCCSSCBCTTCSCC-----------CCHHHHHHHHHHHHHHHHHHTTCTTSH
T ss_pred             CCCCEEEEECCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             99745655404687563324442678899876733560025644466888999998999999999999999862756778


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~R~~ev~~eI~~tGtY~~T~eEL~~GAk~AWRNs~RCIGR~~W~~L~V~D~R~v~t~~~mfeal~~Hi~~ATN~G~I  160 (416)
T d1q2oa_          81 AHEERLQEVEAEVASTGTYHLRESELVFGAKQAWRNAPRCVGRIQWGKLQVFDARDCSSAQEMFTYICNHIKYATNRGNL  160 (416)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHCTTCTTGGGTTCCEEEECTTCCSHHHHHHHHHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999999997464620899999887899870455222300216572665678999899999999999997079987


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 r~~ITVFp~~~~g~~~~RIwN~QLIrYAGY~~~dGsiiGDPa~vefT~~c~~lGW~~~~t~FDvLPLViq~~g~~p~~fe  240 (416)
T d1q2oa_         161 RSAITVFPQRAPGRGDFRIWNSQLVRYAGYRQQDGSVRGDPANVEITELCIQHGWTPGNGRFDVLPLLLQAPDEAPELFV  240 (416)
T ss_dssp             CCEEEECCCCBTTBCCCEECSSBSSCBCEEECTTSCEEECGGGHHHHHHHHHTTCCCCCSSSCBCCEEEECTTSCCEEEC
T ss_pred             CEEEEECCCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCEEEE
T ss_conf             63389737988999986675488786626578998764684216999999976888999987710289997899972673


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 iP~elvlEV~i~HP~~~wf~~LgLkWyavPaiSnM~L~iGGi~y~aaPFNGWYM~TEIgaRnl~D~~RYN~L~~VA~~mG  320 (416)
T d1q2oa_         241 LPPELVLEVPLEHPTLEWFAALGLRWYALPAVSNMLLEIGGLEFSAAPFSGWYMSTEIGTRDLCDPHRYNILEDVAVCMD  320 (416)
T ss_dssp             CCGGGSCEEECCCSSCGGGGGGCCEEESCCEECSCEEEETTEEESCCCEECCCBHHHHHTHHHHCTTTTCCHHHHHHHTT
T ss_pred             CCHHHEEEECCCCCCCCHHHHCCCCEEECCHHCCCEEEECCEEECCCCCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf             88778357346798983066638857605211255000077844245645330022355430455566666899999848


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 LDT~~~~sLWkDrAlvElN~AVLhSF~~~gVtIvDHHtas~~F~~~~~~E~~~~r~~pgdW~WlvPP~S~s~TpvfH~~~  400 (416)
T d1q2oa_         321 LDTRTTSSLWKDKAAVEINLAVLHSFQLAKVTIVDHHAATVSFMKHLDNEQKARGGCPADWAWIVPPISGSLTPVFHQEM  400 (416)
T ss_dssp             CCTTCGGGCHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHSCCBCCHHHHSCSSSGGGSGGGGBCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHH
T ss_conf             78889740467789999999999899877964704068899999999999983899998852777888754541676665


Q ss_pred             ---------------C
Q ss_conf             ---------------9
Q 003496          278 ---------------V  278 (815)
Q Consensus       278 ---------------~  278 (815)
                                     -
T Consensus       401 ~n~~l~P~f~yq~~~w  416 (416)
T d1q2oa_         401 VNYILSPAFRYQPDPW  416 (416)
T ss_dssp             BBCBCSSEEECCCCCC
T ss_pred             HHCCCCCCCCCCCCCC
T ss_conf             5034588865589999

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=31432.77  Aligned_cols=1  Identities=0%  Similarity=-0.461  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 l~~~~~l~~~D~ei~~~i~~e~~rq~~~i~LiaSEN~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~r   80 (416)
T d1dfoa_           1 LKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDR   80 (416)
T ss_dssp             CCTTCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHCCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             98658845519999999999999987690586476657899999855741475658899975447773099999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 a~~lF~a~~anVqp~SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~  160 (416)
T d1dfoa_          81 AKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQ  160 (416)
T ss_dssp             HHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHH
T ss_pred             HHHHHCCCCCEEECCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf             99983998205601557557999999863898866421465433335555544467237999646687667447899999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 a~~~kPklIi~G~S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~aDvvt~tThKtlrGPrggiI~~  240 (416)
T d1dfoa_         161 AKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILA  240 (416)
T ss_dssp             HHHHCCSEEEEECSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTTSSEEEEESSSTTCCCSCEEEEE
T ss_pred             HHHHCCCEEEECCCCCCCCCCHHHHHHHHHHCCCEEECCHHHHHCCEECCCCCCCCCCCCEEEEEHHHCCCCCCCEEEEE
T ss_conf             99836564873432255655879999998751715872212000003244347860000046521001046878638984


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~~iv~ggTdnHlvlv  320 (416)
T d1dfoa_         241 KGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLV  320 (416)
T ss_dssp             SSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEE
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
T ss_conf             23117689998766086534685177898988779987097889999999999999999998389443369988753688


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 dl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~~~~~~~~~~  400 (416)
T d1dfoa_         321 DLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDSINDEAVIER  400 (416)
T ss_dssp             ECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             73045898999999999729688678588999988889821767789984899879999999999999972786799999


Q ss_pred             ---------------C
Q ss_conf             ---------------9
Q 003496          278 ---------------V  278 (815)
Q Consensus       278 ---------------~  278 (815)
                                     .
T Consensus       401 ir~~V~~l~~~fPly~  416 (416)
T d1dfoa_         401 IKGKVLDICARYPVYA  416 (416)
T ss_dssp             HHHHHHHHHHHSCSBC
T ss_pred             HHHHHHHHHHCCCCCC
T ss_conf             9999999998089989

>d1d8wa_ c.1.15.2 (A:) L-rhamnose isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: L-rhamnose isomerase
domain: L-rhamnose isomerase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=31431.30  Aligned_cols=1  Identities=0%  Similarity=-0.825  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 s~i~~~ye~a~e~ya~~GID~e~al~~L~~~~Is~h~WqGddv~gFe~~~g~ltGGi~~tGnyPG~aR~~~E~~~D~~~~   80 (416)
T d1d8wa_           1 TQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQA   80 (416)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCHHHHHHHHTTCCEEEEGGGGTTTCCCCC--------------CSCCCCSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHH
T ss_conf             91679999999999983988999999985484443036678765534677767776021278899889989999889999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~Lipg~~~vnLH~~y~~~~~~vdrd~i~p~hf~~w~~wAk~~glglDfNpt~Fshp~~~~g~sLshpd~~iR~~wI~H~  160 (416)
T d1d8wa_          81 MRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHC  160 (416)
T ss_dssp             HHTSCSCEEEEEEGGGCCCSSCCCGGGCCGGGGHHHHHHHHHTTCEEEEECCCSSSGGGTTSCSTTCSSHHHHHHHHHHH
T ss_pred             HHHCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             98568998400033320258866412258574899999999749774757655578442257762588889999999998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~c~~I~~~~G~~~g~~~v~niWi~DG~k~~~~d~~~~R~Rl~eSLdeI~a~~~d~~~~ld~vE~K~Fg~g~esy~vgs~  240 (416)
T d1d8wa_         161 KASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSN  240 (416)
T ss_dssp             HHHHHHHHHHHHHHTSCEEEEECCCCEESSCCSCSHHHHHHHHHHHHHHTCSCCCTTTEEEEEECCSCBTTBCSEESSCH
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCEEEECCCH
T ss_conf             99999999986300776204776577676888683159999999999998715876650454230125565035763738


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 df~~~yal~~~a~~llD~GH~hPtenI~dkisalll~~~~~~lH~sr~~rwDsDhvvi~~del~~I~~ElVr~~~ld~v~  320 (416)
T d1d8wa_         241 EFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVH  320 (416)
T ss_dssp             HHHHHHHHHHTCEEEEETTSSCTTCCHHHHHHHHTTTSSCEEEEECBCSSSSCCBCCCSSHHHHHHHHHHHHTTGGGTEE
T ss_pred             HHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCE
T ss_conf             88998763489679986798787665999999999727542576388856677612036489999999999645544422


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~LD~fdasinrI~a~v~g~rn~qka~l~ALL~p~~~L~~~q~~gD~t~rla~~Ee~K~~P~~avW~~~c~r~~vp~~~~  400 (416)
T d1d8wa_         321 IGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAPGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSE  400 (416)
T ss_dssp             EEECCCCCSSCHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHTTTCHHHHHHHHHHHTTSCHHHHHHHHHHHTTCCCSTT
T ss_pred             ECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHH
T ss_conf             30023422466199999999999999999976899999999986799999999999851981889999999739998768


Q ss_pred             ---------------C
Q ss_conf             ---------------9
Q 003496          278 ---------------V  278 (815)
Q Consensus       278 ---------------~  278 (815)
                                     .
T Consensus       401 ~~~~v~~Ye~~v~~kR  416 (416)
T d1d8wa_         401 WLESVRAYEKEILSRR  416 (416)
T ss_dssp             HHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHHCC
T ss_conf             8999999999885349

>d2vnud4 b.40.4.16 (D:495-910) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: RNB domain-like
domain: Exosome complex exonuclease RRP44
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=100.00  E-value=0  Score=31426.64  Aligned_cols=1  Identities=0%  Similarity=-0.992  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~Dl~~l~~~tID~~~a~d~DDAisi~~~~~g~~~l~VHIADva   80 (416)
T d2vnud4           1 FSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADVT   80 (416)
T ss_dssp             CCHHHHTTSCTTGGGCCCCSSTTCHHHHHHCGGGGGSEECTTSCCEEEESSSCCCCCEEEEEEECTTSCEEEEEEEECHH
T ss_pred             CCHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCHH
T ss_conf             98789964432368643764453122115752323771177898799769999546565899995899599999983578


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~v~~~s~Ld~~A~~R~~t~Ylp~~~~pMLP~~ls~~~~SL~~~~~r~a~s~~~~~~~~g~i~~~~~~~s~I~~~~~ltY  160 (416)
T d2vnud4          81 HFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSY  160 (416)
T ss_dssp             HHSCTTSHHHHHHHHHCBCEECSSCEECSSCHHHHTTTSSCCBTSEEEEEEEEEEECTTCCEEEEEEEEEEEEBSEEEEH
T ss_pred             HHHCCCCHHHHHHHHHCEEEECCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCEEEHHHHCCCCCCCH
T ss_conf             86299998999999848037589971144788886545205698202467765540210144420332012033322321


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~ev~~~l~~~~~~~~~~~~l~~L~~~a~~l~~~R~~~g~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~s~~lVeE~Mi~A  240 (416)
T d2vnud4         161 EQAQLRIDDKTQNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEVEIKKLLATNSLVEEFMLLA  240 (416)
T ss_dssp             HHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEECSSSSCEEEEEECCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCHHHHHHHHHHH
T ss_conf             66788751354321000678999999999999998568754578742799423335565431122242014078776543


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 N~~vA~~l~~~~~~~~~~R~h~~p~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~  320 (416)
T d2vnud4         241 NISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNTLVRIMSTRCMM  320 (416)
T ss_dssp             HHHHHHHHHHHCTTTCEEEEBCCCCGGGGHHHHHHHHHHHSCCCCCSCHHHHHHHHHTCCBTTBTTHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             08999999984788876400079997999999999997012676865225578999987475672699999999887788


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~a~~~~~~~~s~~~~~H~gLgl~~YthfTSPIRRY~DLv~hrqL~a~l~~~~~~~~~~~~e~l~~i~~~~~~~e~~a~~a  400 (416)
T d2vnud4         321 AAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNKMDMICRNINRKHRNAQFA  400 (416)
T ss_dssp             CCEEEEGGGSCGGGGCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHHTTSSCCCGGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             87763015579976273765722015168677637899999999999737999977443999999999999999999999


Q ss_pred             ---------------C
Q ss_conf             ---------------9
Q 003496          278 ---------------V  278 (815)
Q Consensus       278 ---------------~  278 (815)
                                     .
T Consensus       401 er~~~~~~~~~~lk~~  416 (416)
T d2vnud4         401 GRASIEYYVGQVMRNN  416 (416)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHCC
T ss_conf             9999999999997578

>d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: Isocitrate lyase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=31424.56  Aligned_cols=1  Identities=0%  Similarity=-2.021  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 k~~~~~v~~~~~~w~~pRw~~ikR~Yta~dV~~lRgs~~~~~~~a~~~A~kL~~lL~~~~~~~~v~~lGa~d~~~A~~~~   80 (416)
T d1igwa_           1 KTRTQQIEELQKEWTQPRWEGITRPYSAEDVVKLRGSVNPECTLAQLGAAKMWRLLHGESKKGYINSLGALTGGQALQQA   80 (416)
T ss_dssp             CCHHHHHHHHHHHTTSGGGTTCCCSSCHHHHHHTTCSCCCCCHHHHHHHHHHHHHHTTTSSSSSEEEEBCCSHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHH
T ss_conf             96799999999986696515689998999999966985876837899999999998604445706547757799999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 kaGf~aiYvSG~~~sA~~~~~~~~~PD~gl~~~~~v~~~~~~I~~a~~~~d~~~~~~~~~~~~~~~~d~~lPIIADaDtG  160 (416)
T d1igwa_          81 KAGIEAVYLSGWQVAADANLAASMYPDQSLYPANSVPAVVERINNTFRRADQIQWSAGIEPGDPRYVDYFLPIVADAEAG  160 (416)
T ss_dssp             HHTCCCEEECHHHHHHHSCTTCCCCCSSSCSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCTTCTTCCCCCCCEEEECTTC
T ss_pred             HCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCC
T ss_conf             80998899646100165555678877765462889999999999988889999875200235444444310157742245


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 fG~~~nv~r~vk~~i~AGaagihiEDQ~~~~KkCGHl~gK~lv~~~e~~~ki~AA~~a~d~~~~~~~IiARTDA~~a~li  240 (416)
T d1igwa_         161 FGGVLNAFELMKAMIEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAARLCADVTGVPTLLVARTDADAADLI  240 (416)
T ss_dssp             SSSHHHHHHHHHHHHHTTCSEEEEESBCGGGCCCC----CEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEE
T ss_pred             CCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHH
T ss_conf             67658999999999967871897226766430100148974678999999999999877427998279986230555444


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~sd~d~~D~~fi~g~Rt~eG~yr~~~G~d~aI~R~~aya~gADli~~Et~~~~~e~a~~fa~~v~~~~p~~~l~yn~SPs  320 (416)
T d1igwa_         241 TSDCDPYDSEFITGERTSEGFFRTHAGIEQAISRGLAYAPYADLVWCETSTPDLELARRFAQAIHAKYPGKLLAYNCSPS  320 (416)
T ss_dssp             SCCCCGGGGGGEEEEECTTSCEEECCSHHHHHHHHHHHGGGCSEEEECCSSCCHHHHHHHHHHHHHHSTTCEEEEECC--
T ss_pred             HCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCC
T ss_conf             20131115672057647343522247859999999984322667753168998999999998607876567623478887


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 fnw~~~~~~~~~~~~~~eL~~lGy~~~~~~la~~ha~~~a~~~l~~~~~~~~gm~ayv~~~Q~~E~~~~~~g~~~~~hQ~  400 (416)
T d1igwa_         321 FNWQKNLDDKTIASFQQQLSDMGYKFQFITLAGIHSMWFNMFDLANAYAQGEGMKHYVEKVQQPEFAAAKDGYTFVSHQQ  400 (416)
T ss_dssp             --------------HHHHHHHHTEEEEEETTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHTHHHHHHHHTTTCCTTSHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEHHH
T ss_conf             67201235567999999999659888996768999999999999999863498899999875898887744863020886


Q ss_pred             ---------------C
Q ss_conf             ---------------9
Q 003496          278 ---------------V  278 (815)
Q Consensus       278 ---------------~  278 (815)
                                     .
T Consensus       401 ~~G~~y~D~~~~~~~g  416 (416)
T d1igwa_         401 EVGTGYFDKVTTIIQG  416 (416)
T ss_dssp             HTTHHHHHHHHHHHCC
T ss_pred             HHCCCHHHHHHHHHCC
T ss_conf             7542489999987169

>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: Isocitrate dehydrogenase, ICDH
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=31422.71  Aligned_cols=1  Identities=0%  Similarity=0.236  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~IavipGDGIGPEV~~ealkVL~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~   80 (416)
T d1pb1a_           1 MESKVVVPAQGKKITLQNGKLNVPENPIIPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQ   80 (416)
T ss_dssp             CCCCCCCCSSCBCCEEETTEEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCSHHHHHHHCT
T ss_pred             CCCCCCCCCCCCEEEEECCEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHCC
T ss_conf             99752279998679977998818999889998988624999999999999999874268985589998235799998499


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~lp~~t~~~~~~~da~l~Gav~~P~~~~~~~~~l~lR~~ldlyanvRP~r~~pg~~spl~~~~~iD~vIvREnteG~Y  160 (416)
T d1pb1a_          81 DVWLPAETLDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIY  160 (416)
T ss_dssp             TCSSCHHHHHHHHHHSEEEECCCCCCSSSCCCCHHHHHHHHTTCCEEEEEEECCTTCCCSSSCGGGCEEEEEEECSSGGG
T ss_pred             CCCCCHHHHHHHHHCCEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf             77799999999985498952886699988876667889987486474132002678886434556446599861134422


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~t~~~~~Ri~r~AF~~A~~~~r~~vt~v~Kanvl~~~~gl  240 (416)
T d1pb1a_         161 AGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGA  240 (416)
T ss_dssp             GCCEECTTCHHHHHHHHHHHHTSCCCCCSCCSSCCEECCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTCTTTHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH
T ss_conf             45033456520688998766530530113653036765402122228999999999996699968999789765401678


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 f~~~~~e~a~e~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~vDa~~~~lv~~P~~fdViv~~NlfGDIlSDlaa~l~Ggl  320 (416)
T d1pb1a_         241 FKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGI  320 (416)
T ss_dssp             HHHHHHHHHHHHHCCEECTTSSCEEEECTTTCCEEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHCCC
T ss_conf             99999999987631223344431101046676334289999999999985210467789613578777777888862376


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 Gl~pSanig~~~a~fEp~HGSAPdiaGk~iANP~a~Ils~amML~~lg~~~~A~~i~~Av~~~l~~g~~T~Dl~~~~~~g  400 (416)
T d1pb1a_         321 GIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTVTYDFERLMDGA  400 (416)
T ss_dssp             TTCCCEEECSSCEEEECCSCCCGGGTTSSCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTEECHHHHTTSSSC
T ss_pred             CCCCCCCCCCCCEEEECCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             65445466877248877888615547999759299999999999987997899999999999997598124300046899


Q ss_pred             ---------------C
Q ss_conf             ---------------9
Q 003496          278 ---------------V  278 (815)
Q Consensus       278 ---------------~  278 (815)
                                     -
T Consensus       401 g~~~T~e~~daI~~~l  416 (416)
T d1pb1a_         401 KLLKCSEFGDAIIENM  416 (416)
T ss_dssp             EECCHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHCC
T ss_conf             7727999999999659

>d1dnva_ b.121.5.3 (A:) Densovirus capsid protein {Galleria mellonella densovirus [TaxId: 37138]}

class: All beta proteins
fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
superfamily: ssDNA viruses
family: Densovirinae-like VP
domain: Densovirus capsid protein
species: Galleria mellonella densovirus [TaxId: 37138]

Probab=100.00  E-value=0  Score=31353.54  Aligned_cols=1  Identities=0%  Similarity=-0.726  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~IpRPi~~~~~~~~tyrK~HkFltfGlA~kvi~~~~t~~t~~~~~lTTsLaeiPw~~p~~YMnpsEF~lLP~Gs~v~e   80 (415)
T d1dnva_           1 VYIIPRPFSNFGKKLSTYTKSHKFMIFGLANNVIGPTGTGTTAVNRLLTTCLAEIPWQKLPLYMNQSEFDLLPPGSRVVE   80 (415)
T ss_dssp             CCCCCCCCCCCCCEECCEEEEEEEEEECCCSCCCEECSSTTTCSBEEEEEEEEECCTTBGGGTCCHHHHHTCCTTCBCCC
T ss_pred             CEEECCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHEEHHHCCCCCCCEECCHHHHHHCCCCCEEEE
T ss_conf             93746676778886799965446776200121001456662023232210151160345525248878710689866889


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~vkvv~rn~RiAFeTnSS~T~lATLNQnk~~~~A~GLN~~~~G~nr~~T~f~s~epMiPt~t~~~~y~~v~~~~~y~~~  160 (415)
T d1dnva_          81 CNVKVIFRTNRIAFETSSTVTKQATLNQISNVQTAIGLNKLGWGINRAFTAFQSDQPMIPTATTAPKYEPVTGDTGYRGM  160 (415)
T ss_dssp             EEEEEEEEEEEECCCCSCTTSCCCCSCCCCEEEEESTHHHHTTCBCCCCCCCCSSSCCSCCCCCCCCSSEECSSSCEECH
T ss_pred             EEEEEEEECCEEEEEECCCCCCCEECCCCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             77899984670577755763101001022330110100302454213654556888745667786522355654689999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 v~~~YG~~~~n~~~~~~~~~~P~hq~g~~~~L~nYfc~~~~~~~~tgGwpcl~~hi~e~da~~~~g~~vl~~~YkPk~g~  240 (415)
T d1dnva_         161 IADYYGADSTNDTAFGNAGNYPHHQVSSFTFLQNYYCMYQQTNQGTGGWPCLAEHLQQFDSKTVNNQCLIDVTYKPKMGL  240 (415)
T ss_dssp             HHHHHCCCSSCTTSSSSSSSCCGGGGCCEEECCCEEEECCBSSSSCCCCCCGGGGSEECCTTTTTTSBCCCCEECCSSCB
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC
T ss_conf             99974766678633457777875672772110002577652046889836789998750256678857888852776432


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ik~P~~~~i~g~p~~~g~~sv~~n~~~~~~a~~~~~~~at~n~s~s~~nl~~~fp~~~~~iyt~IEKsQ~~~~G~~g~~~  320 (415)
T d1dnva_         241 IKSPLNYKIIGQPTVKGTISVGDNLVNMRGAVVTNPPEATQNVAESTHNLTRNFPADLFNIYSDIEKSQVLHKGPWGHEN  320 (415)
T ss_dssp             CSCCCCBCCCCCTTBTTBBSCCCCCCCSCCSCEECCCCCBCSSSCBCCCCCEECCCCCCCCCSSCTTSSBSCCTTTCCCT
T ss_pred             CCCCCCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCCHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHEECCCCCCCC
T ss_conf             46743354336655332120010044225765478255443321200204315884103023422133402126766668


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 p~iQPSlHIGv~pVPaLTTa~l~~~~~~~~n~TDt~~ywdV~~~~~V~~~~Pt~~P~~~~~nv~~~~~~y~~nl~~~~~t  400 (415)
T d1dnva_         321 PQIQPSVHIGIQAVPALTTGALLINSSPLNSWTDSMGYIDVMSSCTVMEAQPTHFPFSTEANTNPGNTIYRINLTPNSLT  400 (415)
T ss_dssp             TCCCCCCCCCCEEEEECCBCCCCSSCCSCCCBCCEEEEEEEEEEECCEECCCCCSTTCCSCCBCTTTCCCCCCCSSCSSC
T ss_pred             CCCCCCEEECCEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf             75376246332204400113223378776762202589999988999855886544556678883303230446765556


Q ss_pred             --------------C
Q ss_conf             --------------9
Q 003496          278 --------------V  278 (815)
Q Consensus       278 --------------~  278 (815)
                                    .
T Consensus       401 s~~~GlY~~~~~~~~  415 (415)
T d1dnva_         401 SAFNGLYGNGATLGN  415 (415)
T ss_dssp             SSSCCSSSCCSSCCC
T ss_pred             CCCCCEEECCHHCCC
T ss_conf             521212641110379

>d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: PDEase
domain: cGMP-inhibited 3',5'-cyclic phosphodiesterase B, pde3b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=31351.79  Aligned_cols=1  Identities=0%  Similarity=-1.059  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~l~~l~~W~Fd~f~l~~~~~~~~~~~L~~~~~~lf~~~gl~~~f~i~~~~l~~Fl~~v~~~Y~~nPYHN   80 (415)
T d1so2a_           1 LDLILVEEYDSLIEKMSNWNFPIFELVEKMGEKSGRILSQVMYTLFQDTGLLEIFKIPTQQFMNYFRALENGYRDIPYHN   80 (415)
T ss_dssp             CCSHHHHHHHHHHHHHTSTTCCHHHHHHHHGGGGGGHHHHHHHHHHHHTTHHHHTTCCHHHHHHHHHHHHTTSCSCSSSS
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCHHHCCHHHCCCCCCHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             96110688999997224689882020155212334489999999999778377529899999999999998579998827


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~HA~dV~q~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lE~~alliAA  160 (415)
T d1so2a_          81 RIHATDVLHAVWYLTTRPVPGLQQIHNGCGTGNETDSDGRINHGRIAYISSKSCSNPDESYGCLSSNIPALELMALYVAA  160 (415)
T ss_dssp             HHHHHHHHHHHHHHTTSCEETCCCCCCC---------------CCCCCCCCTTCCCSSTTEECGGGTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHH
T ss_conf             89999999999999956554422111222233221111222332100122222333322201565408999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 l~HDvdHpG~nN~Flv~t~~pLA~lYnd~SVLEnhH~a~a~~lll~~~~~nil~~l~~~e~~~~r~lii~~ILATDm~~H  240 (415)
T d1so2a_         161 AMHDYDHPGRTNAFLVATNAPQAVLYNDRSVLENHHAASAWNLYLSRPEYNFLLHLDHVEFKRFRFLVIEAILATDLKKH  240 (415)
T ss_dssp             HHTTTTCCSCCHHHHHHTTCHHHHHTTTSSHHHHHHHHHHHHHHHTCGGGCTTTTSCHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred             HHHCCCCCCCCHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             97226999966889987188789985898888999999999999648542143069999999999999999970464567


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 f~~l~~f~~~~~~~~~~~~~~~~~~~r~lv~~~lik~ADIs~~~rp~~v~~~W~~~l~~EF~~QGd~E~~lglp~sp~~D  320 (415)
T d1so2a_         241 FDFLAEFNAKANDVNSNGIEWSNENDRLLVCQVCIKLADINGPAKVRDLHLKWTEGIVNEFYEQGDEEANLGLPISPFMD  320 (415)
T ss_dssp             HHHHHHHHHHHTSSSCCCCCTTCHHHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCC
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             99999999998740047767787888999999999998624744582889999999999999987799866999985668


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 R~~~~~~k~QigFi~~iv~PLf~~l~~a~~~~~~~~~~~~~n~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (415)
T d1so2a_         321 RSSPQLAKLQESFITHIVGPLCNSYDAAGLLPGQWLEAEEDNDTESGDDEDGEELDTEDEEMENNLNPKPPRRKSRRRIF  400 (415)
T ss_dssp             TTSCCHHHHHHHHHHHTHHHHHHHHHHTTCSCCEECC-------------------------------------CCSSEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf             66564157899999998999999999983255999999998898778757664134400015554455776056677776


Q ss_pred             --------------C
Q ss_conf             --------------9
Q 003496          278 --------------V  278 (815)
Q Consensus       278 --------------~  278 (815)
                                    .
T Consensus       401 ~~~~~~l~en~~~w~  415 (415)
T d1so2a_         401 CQLMHHLTENHKIWK  415 (415)
T ss_dssp             CHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCC
T ss_conf             689999986255129

>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Trypanosoma brucei [TaxId: 5691]

Probab=100.00  E-value=0  Score=31351.46  Aligned_cols=1  Identities=0%  Similarity=-1.556  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~ktl~d~~~~~K~VlvRvD~NvPi~~g~I~d~~RI~~~~pTi~~ll~~~akvvl~SH~GRPkg~~~~~~~~~~~~~~~~   80 (415)
T d16pka_           1 EKKSINECDLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGGSCVLMSHLGRPKGIPMAQAGKIRSTGGVP   80 (415)
T ss_dssp             CBCBGGGSCCTTCEEEEEECCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCCBCGGGHHHHHHTTCCT
T ss_pred             CCCCCCCCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99741013878998999934675555995897388999999999999788979999058998987555322222223312


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~sL~~~a~~L~~~l~~~V~f~~~~~~~~~~i~~l~~g~i~LLEN~Rf~~eE~~~~~~~~~~fak~LA~laDiyVN  160 (415)
T d16pka_          81 GFQQKATLKPVAKRLSELLLRPVTFAPDCLNAADVVSKMSPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYIS  160 (415)
T ss_dssp             TCCGGGCSHHHHHHHHHHHTSCCEEESCTTSCHHHHHTCCTTCEEEECCGGGBGGGGCSSHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf             36833473889999998758674234431024456650577416874200024532322122138999998722868994


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 DAFg~sHR~haS~~Gi~~~lps~~gg~L~ekEl~~L~~~l~~p~~P~~aIlGGaKisdKi~~i~~l~~k~D~iligG~~a  240 (415)
T d16pka_         161 DAFGTAHRDSATMTGIPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMA  240 (415)
T ss_dssp             ECGGGTTSCCTTTTHHHHHHTCCEECHHHHHHHHHHHHHHSCCCSSEEEEECSSCSGGGHHHHHHHGGGCSEEEECTTHH
T ss_pred             CCCCHHHCCCCCEECCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHHH
T ss_conf             56202204675122200014224678999999999999970977551899853653437999998885365565322188


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ntfL~a~G~~iG~sl~e~~~~~~a~~i~~~~~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~  320 (415)
T d16pka_         241 YTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEK  320 (415)
T ss_dssp             HHHHHHHTCCCTTCCCCGGGHHHHHHHHHHHHHTTCEEECCSSEEEESSSSCCSSCEECSSSCCCTTCEEEEECHHHHHH
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             89999809805544304443212666522321151678511203303101334443112222234543777787776667


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~I~~AktI~wNGP~GvfE~~~F~~GT~~l~~~ia~~t~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTGGGA~L~~  400 (415)
T d16pka_         321 YVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLEL  400 (415)
T ss_dssp             HHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHHHCCEEEECSHHHHHHHHHTTCTTTSSEECSCHHHHHHH
T ss_pred             HHHHHHHHCEEEEECCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCCEEECCHHHHHHH
T ss_conf             76766513569996653213155151799999999998413479989987789999999719735870798778999999


Q ss_pred             --------------C
Q ss_conf             --------------9
Q 003496          278 --------------V  278 (815)
Q Consensus       278 --------------~  278 (815)
                                    .
T Consensus       401 L~G~~LPgi~aL~~k  415 (415)
T d16pka_         401 LEGKTLPGVTVLDDK  415 (415)
T ss_dssp             HTTCCCHHHHTSCBC
T ss_pred             HCCCCCCHHHHHHCC
T ss_conf             879996257785069

>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Pyruvate dehydrogenase E1 component, PP module
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=31351.22  Aligned_cols=1  Identities=0%  Similarity=-0.360  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~p~~~~~e~~~~~~iR~~~~~~v~~a~~~~~~~GGH~g~~ls~~~l~~vl~~~~~~~p~~~~~d~   80 (415)
T d2ieaa2           1 ISNYINTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRARNEQDGGD   80 (415)
T ss_dssp             CCCSSCSSCGGGCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCCCCHHHHHHHHHHHHHHHHTCCCCCSSSCCC
T ss_pred             CCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             99853688854368999889999999999999999999982678998898254679999999999985148987688887


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~ilskGHas~~lYa~l~~~g~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~a~~~  160 (415)
T d2ieaa2          81 LVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRG  160 (415)
T ss_dssp             EEECCGGGHHHHHHHHHHTTSSCHHHHTTBTCCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             79835750299999999839875035777753135789898888777888776798202157899999999987876530


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~gDg~~~eg~~~ea~~~a~~~~l~nl~~i~d~N~~~~~~~~~~~~~~~~~~~~~~~~~gw~v~~~~~~  240 (415)
T d2ieaa2         161 LKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWG  240 (415)
T ss_dssp             SCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBC
T ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCEEECCCHHCCCCCHHHHHHHHHHCCCEEEEEECC
T ss_conf             23578842899954320023899999988887288808999967863356671014311488999998648626874031


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~d~~~al~~~~~~~v~g~~~~~~~~~ga~~~~~~~~~~~~~~~l~~~l~~~~~~~l~~dGHd~~~l~~a~~~  320 (415)
T d2ieaa2         241 SRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKK  320 (415)
T ss_dssp             GGGHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTGGGSHHHHTTSTTSCHHHHTTCCBGGGCHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             02444320102434334121033431100002441566665303421046787663131455665315740446899999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ak~~~d~P~vI~a~TiKGkGlp~A~e~~n~~H~~kkl~~Ee~~~~r~rl~~pl~d~~~e~~pf~~p~~~s~e~~~l~err  400 (415)
T d2ieaa2         321 AQETKGKATVILAHTIKGYGMGDAAEGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSEEHTYLHAQR  400 (415)
T ss_dssp             HHHCCSSCEEEEEECCTTTTCTTCC-------------CHHHHHHHHHTTCSCCHHHHTTCCCCCCCTTSHHHHHHHHHH
T ss_pred             HHHCCCCCEEEEEECCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf             98658996289973523368874334621012788899999999999839999813443179778888889999999999


Q ss_pred             --------------C
Q ss_conf             --------------9
Q 003496          278 --------------V  278 (815)
Q Consensus       278 --------------~  278 (815)
                                    .
T Consensus       401 ~~Lgg~lP~r~~~~~  415 (415)
T d2ieaa2         401 QKLHGYLPSRQPNFT  415 (415)
T ss_dssp             HTTTSCSSCCCSSCC
T ss_pred             HHHCCCCCCCCCCCC
T ss_conf             984898876787889

>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=31350.57  Aligned_cols=1  Identities=0%  Similarity=-0.527  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~kltl~d~dl~gK~VlvRvD~NvPi~~g~I~Dd~RI~~~lpTI~~L~~~~ak~vIL~SH~GRP~g~~~~~~Sl~~va   80 (415)
T d1qpga_           1 SLSSKLSVQDLDLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGQPNGERNEKYSLAPVA   80 (415)
T ss_dssp             CTTSBCBGGGCCCTTCEEEEECCCCCCBSSSSBSCCHHHHHHHHHHHHHHTTCCSEEEEECCCSCCCSSCCGGGCSHHHH
T ss_pred             CCCCCCCHHHCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHH
T ss_conf             98666850322757998999932467643997896789999999999999879988999624899999879776869999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~L~~~l~~~V~f~~d~~g~~~~~~i~~l~~g~I~LLENvRF~~eE~~~~~~~~~~~~~~~~n~~~fak~La~laDiyVN  160 (415)
T d1qpga_          81 KELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYIN  160 (415)
T ss_dssp             HHHHHHHTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSHHHHTEEEETTEEEECCHHHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCEEEE
T ss_conf             99985319846984577776311012334467579942111143310246543011100100269999987547848996


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 DAFg~aHR~haS~~g~~~~~s~aG~lmekEl~~L~~~l~~p~rP~vaIlGGaKvsdKi~vl~~l~~k~D~iiigG~mant  240 (415)
T d1qpga_         161 DAFGTAHRAHSSMVGFDLPQRAAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFT  240 (415)
T ss_dssp             CCGGGTTSCCHHHHCCCCSCEEECHHHHHHHHHHHHHHSSCCSSEEEEECSSCSGGGHHHHHHHTTTCSEEEECGGGHHH
T ss_pred             CCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEEECHHHHH
T ss_conf             55011100565423455785633288999999999996499998599995476442899998787535557751103577


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 flk~~~g~~ig~s~~e~~~~~~~~~i~~~a~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~  320 (415)
T d1qpga_         241 FKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKL  320 (415)
T ss_dssp             HHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEEECCSEEEEESSSSSSCCCCEEETTTCCCTTCEEEEECHHHHHH
T ss_pred             HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHH
T ss_conf             88760377666531122211023689999876598675512278730245555531230013558765123466046789


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~I~~a~tI~wNGP~GvfE~~~F~~GT~~i~~~ia~~~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTGGGA~L~~L  400 (415)
T d1qpga_         321 FAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAAGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELL  400 (415)
T ss_dssp             HHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHHTCEEEECCHHHHHHHHHTTCGGGSSEECCCTHHHHHHH
T ss_pred             HHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHH
T ss_conf             99875368679997774152465240689999999997215798299957899999997598568806967789999998


Q ss_pred             --------------C
Q ss_conf             --------------9
Q 003496          278 --------------V  278 (815)
Q Consensus       278 --------------~  278 (815)
                                    .
T Consensus       401 ~G~~LPgi~aL~~~k  415 (415)
T d1qpga_         401 EGKELPGVAFLSEKK  415 (415)
T ss_dssp             TSCCCHHHHTSCBCC
T ss_pred             CCCCCCHHHHHHHCC
T ss_conf             799970798885288

>d2qeec1 c.1.9.8 (C:2-416) Uncharacterized protein BH0493 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Uronate isomerase-like
domain: Uncharacterized protein BH0493
species: Bacillus halodurans [TaxId: 86665]

Probab=100.00  E-value=0  Score=31345.93  Aligned_cols=1  Identities=0%  Similarity=-0.926  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~s~~~ia~~L~~~i~~~PIID~H~HL~p~~~~~~~f~~~~~l~~~hyyk~r~mr~~gv~e~~itg~~~~~~~~~~~~~   80 (415)
T d2qeec1           1 SINSREVLAEKVKNAVNNQPVTDMHTHLFSPNFGEILLWDIDELLTYHYLVAEVMRWTDVSIEAFWAMSKREQADLIWEE   80 (415)
T ss_dssp             CCCCHHHHHHHHHHHHHHSCEEECSCSCCCGGGGGGSBCSHHHHHTSHHHHHHHHTTCCSCHHHHHHSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHH
T ss_conf             97458999999999975898868888969778511677881888431799999998539998980789847889999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~p~~~w~~~~l~~~~~l~~~~~~~~~~~i~~~~~~~~~e~~~r~ll~~~nVe~v~tTDdP~D~L~~H~~~~~~~~  160 (415)
T d2qeec1          81 LFIKRSPVSEACRGVLTCLQGLGLDPATRDLQVYREYFAKKTSEEQVDTVLQLANVSDVVMTNDPFDDNERISWLEGKQP  160 (415)
T ss_dssp             HTTSSCCCSHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHTCCHHHHHHHHHHHTTEEEEECCBCTTCHHHHHHHHTTCCC
T ss_pred             HHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf             97428935899999888852567666767899999999762511179999998282035213797321899998604688


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~v~ptfRpD~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  240 (415)
T d2qeec1         161 DSRFHAALRLDPLLNEYEQTKHRLRDWGYKVNDEWNEGSIQEVKRFLTDWIERMDPVYMAVSLPPTFSFPEESNRGRIIR  240 (415)
T ss_dssp             CTTEECCEECHHHHHCHHHHHHHHHHTTCCCCSSCSHHHHHHHHHHHHHHHHHHCCSCEEEEECTTCCSSCSSHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             75223002479886321007899999886145644576799999999999987325688885687788677999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~l~~~~~e~g~~mQlH~Ga~Rn~n~~~~~~g~~~g~~~~~~L~~ll~~~~~~k~il~~l~~~~~~e~a~lag~f~~v~l  320 (415)
T d2qeec1         241 DCLLPVAEKHNIPFAMMIGVKKRVHPALGDAGDFVGKASMDGVEHLLREYPNNKFLVTMLSRENQHELVVLARKFSNLMI  320 (415)
T ss_dssp             HTHHHHHHHHTCCEEEEECEETTSSGGGGGGGCEECCCCSHHHHHHHHHCTTSCEEEEECCGGGHHHHHHHHHHCTTEEE
T ss_pred             HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCEEE
T ss_conf             99999987569817873376667773103478775767999999999848998879996896538999999853887067


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 gg~WWf~d~~~gm~~~l~~~~e~~~~~fvg~~TDsRsf~~~~~rheyfRRil~~~L~~~v~d~v~~g~~~~~~~l~~~v~  400 (415)
T d2qeec1         321 FGCWWFMNNPEIINEMTRMRMEMLGTSFIPQHSDARVLEQLIYKWHHSKSIIAEVLIDKYDDILQAGWEVTEEEIKRDVA  400 (415)
T ss_dssp             BCCCGGGCSHHHHHHHHHHHHHHHTTCSBCCCCCCSBTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             CCCEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             77016636899999999999874400112254586644303378999999999999999999973689997999999999


Q ss_pred             --------------C
Q ss_conf             --------------9
Q 003496          278 --------------V  278 (815)
Q Consensus       278 --------------~  278 (815)
                                    .
T Consensus       401 dI~y~Na~~yfg~~~  415 (415)
T d2qeec1         401 DLFSRNFWRFVGRND  415 (415)
T ss_dssp             HHHTHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHCCCC
T ss_conf             999999999828899

>d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus solfataricus [TaxId: 2287]}

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: DNA polymerase I
domain: Family B DNA polymerase
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=0  Score=31343.43  Aligned_cols=1  Identities=0%  Similarity=0.038  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~i~~~~~~~~~~~~~~iP~k~~~~~~~~~~~~~~~~~~~~y~Gg~V~~P~~G~~~~V~~lDf~SLYPSii~~~Ni~   80 (415)
T d1s5ja2           1 EISTWVKNLYYWEHRKRNWLIPLKEEILAKSSNIRTSALIKGKGYKGAVVIDPPAGIFFNITVLDFASLYPSIIRTWNLS   80 (415)
T ss_dssp             CHHHHHHHHHHHHHHHHTBCCCCHHHHHHTTCC--------------CCCCCCCSEEEEEEEEEEETTHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCHHHHHCCCCCCCCCEEECCCCCCCCCCEEEEECCCCCHHHHHHHCCC
T ss_conf             96489999999999977985789742245453201110034577387387079987657647878345339999996889


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~R~~~~~~~~k~~~~~~~~~~~~d~~Q~A~Ki~~NS~  160 (415)
T d1s5ja2          81 YETVDIQQCKKPYEVKDETGEVLHIVCMDRPGITAVITGLLRDFRVKIYKKKAKNPNNSEEQKLLYDVVQRAMKVFINAT  160 (415)
T ss_dssp             TTTBSCSCCSSCCEECCSSSCCCEEBCCSSCCHHHHHHHHHHHHHHHTHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             30237534578765445799745786378887427899999999987420021123442268888788999999877777


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 YG~~G~~~~~~~~~~~A~~iT~~GR~~i~~~~~~~~~~g~~viygDTDSv~v~~~~~~~~e~~~~~i~~~~~~~le~e~~  240 (415)
T d1s5ja2         161 YGVFGAETFPLYAPRVAESVTALGRYVITSTVKKAREEGLTVLYGDTDSLFLLNPPKNSLENIIKWVKTTFNLDLEVDKT  240 (415)
T ss_dssp             HHHHHSTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEESCCHHHHHHHHHHHHHHSSCCEEEEEE
T ss_pred             HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEE
T ss_conf             77775466442328999899999999999888876605962466423314896288753999999987332212554425


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~KKrY~g~~~dgkl~~kGie~vRrd~~~~~k~~~~~vl~~il~~~~~~~~~~~~~~i~~~l~~~~~~l~~~~  320 (415)
T d1s5ja2         241 YKFVAFSGLKKNYFGVYQDGKVDIKGMLVKKRNTPEFVKKVFNEVKELMISINSPNDVKEIKRKIVDVVKGSYEKLKNKG  320 (415)
T ss_dssp             EEEEEEC----CEEEECSSSCCCEESCCC--------CCSHHHHHHHHHHTTCCSCCTTHHHHHHHHHHHHHHCTTC---
T ss_pred             EEHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             51664431033203220255400110000356537889999999999997169878888878899999999999986079


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 i~~~dl~~~k~l~k~~~~Y~~~~p~hv~~A~~l~~~g~~~~~GdrI~YViv~~~~~~~p~~~~~~~~iD~~yYi~~l~~p  400 (415)
T d1s5ja2         321 YNLDELAFKVMLSKPLDAYKKNTPQHVKAALQLRPFGVNVLPRDIIYYVKVRSKDGVKPVQLAKVTEIDAEKYLEALRST  400 (415)
T ss_dssp             -------------------------------------------------------------------CCSSTTHHHHHTT
T ss_pred             CCHHHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             78688202320146734311799389999999985599999989899999947999882220357998889999999999


Q ss_pred             --------------C
Q ss_conf             --------------9
Q 003496          278 --------------V  278 (815)
Q Consensus       278 --------------~  278 (815)
                                    -
T Consensus       401 l~~il~~~g~~~~el  415 (415)
T d1s5ja2         401 FEQILRAFGVSWDEI  415 (415)
T ss_dssp             STTHHHHHSCCCCCC
T ss_pred             HHHHHHHHCCCHHHC
T ss_conf             999998628994439

>d2b8na1 c.118.1.1 (A:4-417) Putative glycerate kinase (hypothetical protein TM1585) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: GckA/TtuD-like
superfamily: GckA/TtuD-like
family: GckA/TtuD-like
domain: Putative glycerate kinase (hypothetical protein TM1585)
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=0  Score=31276.81  Aligned_cols=1  Identities=100%  Similarity=0.103  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~lr~~~~~if~a~v~av~P~~~v~~~l~~~~~~~i~vvg~GKAa~~MA~~~~~~lg~~i~~g~vv~~~~~~~~~~~~i   80 (414)
T d2b8na1           1 PESLKKLAIEIVKKSIEAVFPDRAVKETLPKLNLDRVILVAVGKAAWRMAKAAYEVLGKKIRKGVVVTKYGHSEGPIDDF   80 (414)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSHHHHHHTTHHHHCCCSEEEEEESTTHHHHHHHHHHHHGGGEEEEEEEEETTCCCSCCTTC
T ss_pred             CHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCE
T ss_conf             95689999999999998419789999847757999889999818999999999997276677059995898677888874


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~v~~a~HP~Pd~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitL~dk~~~~~~Ll~sGA~I~eiN~VRk  160 (414)
T d2b8na1          81 EIYEAGHPVPDENTIKTTRRVLELVDQLNENDTVLFLLSGGGSSLFELPLEGVSLEEIQKLTSALLKSGASIEEINTVRK  160 (414)
T ss_dssp             EEEEECSSSCCHHHHHHHHHHHHHHSSCCTTCEEEEEECTTHHHHSCCBCTTCCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             89978999998779999999999996489887689985088540011488999999999999999858998799999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~lS~iKGG~La~~a~pa~v~sLilSDV~GDdl~~IaSGPTvpd~~t~~da~~il~~y~l~~p~~v~~~l~~~~~~~~~~v  240 (414)
T d2b8na1         161 HLSQVKGGRFAERVFPAKVVALVLSDVLGDRLDVIASGPAWPDSSTSEDALKVLEKYGIETSESVKRAILQETPKHLSNV  240 (414)
T ss_dssp             TTBSSTTTHHHHHHTTSEEEEEEECCSTTCCTTTGGGCTTSCCCCCHHHHHHHHHHTTCCCCHHHHHHHTSCCCSCCSSE
T ss_pred             HHHHCCCCHHHHHHCCCCEEEEEEECCCCCCCHHEECCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf             98753662799971558568999805889981312048867899888999999998398777689986513578433454


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~ii~~n~~al~aa~~~a~~~G~~~~~~~~~l~Gea~~va~~~a~~~~~~~~~~~~~~~p~~li~GGEtTV~v~g~G~G  320 (414)
T d2b8na1         241 EIHLIGNVQKVCDEAKSLAKEKGFNAEIITTSLDCEAREAGRFIASIMKEVKFKDRPLKKPAALIFGGETVVHVKGNGIG  320 (414)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHTTCEEEEEEEEECSBHHHHHHHHHHHHHHHHHHCCSSCSSEEEEEEECCBCCCCSCCCC
T ss_pred             CEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEECCCCCC
T ss_conf             13895689999999999998749943995342457689999999999999985278888974899756568870689998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 GRNqElaL~~a~~l~~~~~~~~ls~gTDG~DGptdaAGAivd~~t~~~~~~~gld~~~~L~~~DS~~f~~~~~~li~TGp  400 (414)
T d2b8na1         321 GRNQELALSAAIALEGIEGVILCSAGTDGTDGPTDAAGGIVDGSTAKTLKAMGEDPYQYLKNNDSYNALKKSGALLITGP  400 (414)
T ss_dssp             CHHHHHHHHHHHHTTTCTTEEEEEEETTSCCSSSSCCEEEEETTHHHHHHHTTCCHHHHHHTTCHHHHHHHTTCEECCCC
T ss_pred             CCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCHHHHHHCCCEECCCC
T ss_conf             64399999999983699996999975478878988775887662799999869999999987786999997699786199


Q ss_pred             -------------C
Q ss_conf             -------------9
Q 003496          278 -------------V  278 (815)
Q Consensus       278 -------------~  278 (815)
                                   -
T Consensus       401 TgTNV~Dl~i~li~  414 (414)
T d2b8na1         401 TGTNVNDLIIGLIV  414 (414)
T ss_dssp             CSCCCCEEEEEEEC
T ss_pred             CCCCHHHHEEEEEC
T ss_conf             99656350777969

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=31276.74  Aligned_cols=1  Identities=0%  Similarity=0.204  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~aFd~i~l~Pr~L~dvs~i   80 (414)
T d1kbia1           1 APGETKEDIARKEQLKSLLPPLDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKV   80 (414)
T ss_dssp             CTTCCHHHHHHHHHHHHTCCCGGGCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGCEECCCCSCCCSSC
T ss_pred             CCCCCHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHCEEECCCCCCCCCC
T ss_conf             99885444556777631599812167999999999986888888887146665099999999997360665335787678


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 Dlst~~lG~~l~~P~~Isp~g~~~~~~~~~~~~~~A~a~aa~~~~~~~~ls~~~~~~~~~~~~~a~~~~~~~~~q~y~~~  160 (414)
T d1kbia1          81 DISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNS  160 (414)
T ss_dssp             BCCEEETTEEESSSEEECCCSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEEEEECCCS
T ss_pred             CCCEEECCCCCCCCEEECHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHCCCCCC
T ss_conf             88534898417888788745640456822367887764777641365322322346568899872177541011021124


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~l~~ra~~ag~~al~~tvD~~~~g~re~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~i~~  240 (414)
T d1kbia1         161 DRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEE  240 (414)
T ss_dssp             SHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHH
T ss_conf             58889999999987188510123344324651787872556654331444203554553277899985066899999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 i~~~~~~~~i~kgi~~~~da~~~~~~G~~~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~v~~~~~viadGGIR~G~D  320 (414)
T d1kbia1         241 LKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTD  320 (414)
T ss_dssp             HHHHCSSCEEEEEECSHHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHH
T ss_pred             HHCCCCCEEEEECCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHH
T ss_conf             86157752775200006777788743886245223211111112200000024666664111488513885388676789


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 VaKALALGAdaVgigrp~L~~la~~G~egv~~~l~~l~~EL~~~M~l~G~~si~eL~~~~l~~~~~~~~~~~~p~~~~~~  400 (414)
T d1kbia1         321 VLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLLDLSTLKARTVGVPNDVLYN  400 (414)
T ss_dssp             HHHHHHHTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEECTTTTCEECCCCCCHHHH
T ss_pred             HHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHCCCCCCCCCCCCCCCCHHHC
T ss_conf             99999758998877689999998446999999999999999999998589997891998834232243367899512210


Q ss_pred             -------------C
Q ss_conf             -------------9
Q 003496          278 -------------V  278 (815)
Q Consensus       278 -------------~  278 (815)
                                   .
T Consensus       401 ~~~~~~~~~~~~~~  414 (414)
T d1kbia1         401 EVYEGPTLTEFEDA  414 (414)
T ss_dssp             HHCCCCCCCCCCCC
T ss_pred             CCCCCCCCCCCCCC
T ss_conf             35678775333679

>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Gamma-glutamyl phosphate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=0  Score=31273.14  Aligned_cols=1  Identities=0%  Similarity=-1.690  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ee~~~a~~~A~~Af~~w~~~s~~eR~~iL~k~a~~l~~~~~eia~~~~~e~gk~~~~~~~e~~~~rl~~~~~~i~~~~~~   80 (414)
T d1o20a_           1 DELLEKAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALNDKRIDEMIKA   80 (414)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCCHHHHHHHCCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHH
T ss_conf             97999999999999998629999999999999999997699999999999865886041177787874249999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~p~n~p~~~~~~~~~~alaaGN~vvlKps~~tp~~~~~~~~l~  160 (414)
T d1o20a_          81 CETVIGLKDPVGEVIDSWVREDGLRIARVRVPIGPIGIIYESRPNVTVETTILALKSGNTILLRGGSDALNSNKAIVSAI  160 (414)
T ss_dssp             HHHHHHSCCCTTCEEEEEECTTSCEEEEEEEECCCEEEECCSCTHHHHHHHHHHHHTTCCEEEECCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHCCCHHEECCCCHHCCCCCCCCCCCCHHHHHH
T ss_conf             99999865511233443344332101211221232012315717776514101001365201045600011002034677


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~le~gGgn~~viv~~dAd~~~A~  240 (414)
T d1o20a_         161 REALKETEIPESSVEFIENTDRSLVLEMIRLREYLSLVIPRGGYGLISFVRDNATVPVLETGVGNCHIFVDESADLKKAV  240 (414)
T ss_dssp             HHHHTTSSSCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHCSSCBCCCCCCCEEEEECTTSCHHHHH
T ss_pred             HHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHCCCCCEECCCCCCCCEECCCCCCHHHHH
T ss_conf             76543212432124555543103444123334358699746079999876540344021046987871053335434456


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~gq~C~a~~r~~V~~~i~d~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~FgPvl~v~~~  320 (414)
T d1o20a_         241 PVIINAKTQRPGTCNAAEKLLVHEKIAKEFLPVIVEELRKHGVEVRGCEKTREIVPDVVPATEDDWPTEYLDLIIAIKVV  320 (414)
T ss_dssp             HHHHHHHHSCTTSTTSEEEEEEEHHHHHHHHHHHHHHHHHTTCEEEECHHHHHHSTTSEECCGGGTTCCCCSSEEEEEEE
T ss_pred             HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCEECCCCCCCCEEEEEEEEEEEE
T ss_conf             68875441378643355522010889999999986899976986555465542110000002456770220037999994


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~dEAI~~aN~~~yGLsa~I~T~d~~~a~~~~~~i~~G~V~IN~~~~~~~~~~~g~g~~~G~~~~~~~~~G~~gl~~~t  400 (414)
T d1o20a_         321 KNVDEAIEHIKKYSTGHSESILTENYSNAKKFVSEIDAAAVYVNASTRFTDGGQFGFGAEIGISTQRFHARGPVGLRELT  400 (414)
T ss_dssp             SSHHHHHHHHHHHCCSSEEEEECSCHHHHHHHHHHCCSSEEEESSCGGGCSTTTTTCSCCSCEECSSSSCCEECCTGGGE
T ss_pred             CCHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHC
T ss_conf             99999999985589998179995899999999983981499991898688888879978156249989987456799849


Q ss_pred             -------------C
Q ss_conf             -------------9
Q 003496          278 -------------V  278 (815)
Q Consensus       278 -------------~  278 (815)
                                   .
T Consensus       401 ~~K~vv~~~~~~~~  414 (414)
T d1o20a_         401 TYKFVVLGEYHVRE  414 (414)
T ss_dssp             EEEEEEECSSCCCC
T ss_pred             EEEEEEECCCCCCC
T ss_conf             57799987875378

>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=31270.35  Aligned_cols=1  Identities=0%  Similarity=0.303  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~~~~~~~~iV~l~GDE~tr~i~~~i~~~~~~~~~di~~~~~d~G~e~~~~tg~~l~~daieaik~~~v~lkG~~~tP~~   80 (414)
T d1t0la_           1 MSKKISGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNVGVKCATITPDE   80 (414)
T ss_dssp             CCCCEEEEEEEEEECCHHHHHHHHHHHHHTTTTTEEEEEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred             CCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCC
T ss_conf             98643368779956718999999999999707897752799826789998629967799999998669886678679873


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~s~n~~lR~~~~~~~~~rp~~~~~~~~~~~~~~~d~vvvREnteg~Y~g~e~~~~~~~~~~~~~~~~~  160 (414)
T d1t0la_          81 KRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSD  160 (414)
T ss_dssp             HHHHHHTCSSCCCCHHHHHHHHHCCEEEEEECCCTTCCCSBTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETT
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCEEEEEEEECC
T ss_conf             33330012211010028889862765231126864899876787674367404554425436899779860689985046


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~a~~~a~~~r~~v~~~~K~nv~~~t~glfr~~~~eva~~yp~~~~~  240 (414)
T d1t0la_         161 GTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFE  240 (414)
T ss_dssp             CSCCEEEEEEEECSCCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             CCCCEEECCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             65310000123467784268776205566788889999998469735875035614445288999999999876330134


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~v~~~~~~~Da~~~~~~~~p~fdVivt~NLfGDILSDl~a~l~GglGl~pSanig~~~~~~~fe~~hg~aP~hGsapd  320 (414)
T d1t0la_         241 AQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQ  320 (414)
T ss_dssp             HTTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECSSCCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHC
T ss_conf             32025666677789874148988728997674530566566562577431210115764334412355555543221001


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 iAGk~iANP~A~ILS~amML~~lg~~d~~~~l~~~A~~Ie~Av~~~l~~G~~T~DlgG~~~~~~~~~~~~~lsT~ef~da  400 (414)
T d1t0la_         321 KGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDK  400 (414)
T ss_dssp             TTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHSCGGGCCGGGCCCHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             37766539099999999999985265643689999999999999999679988231877666665556676589999999


Q ss_pred             -------------C
Q ss_conf             -------------9
Q 003496          278 -------------V  278 (815)
Q Consensus       278 -------------~  278 (815)
                                   -
T Consensus       401 vi~~L~~~l~~~~~  414 (414)
T d1t0la_         401 LGENLKIKLAQAKL  414 (414)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             99999998865659

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=100.00  E-value=0  Score=31201.36  Aligned_cols=1  Identities=0%  Similarity=-1.590  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~f~~~~~~~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~l~~~~~rp~LVVt~n~~~A~qL~~dL~~~l   80 (413)
T d1t5la1           1 EGRFQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLYSELKEFF   80 (413)
T ss_dssp             CCCCCCCCSSCCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHC
T ss_pred             CCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHC
T ss_conf             98427705889999888999999999865998589967787489999999999739998999489999999999999874


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~vIVv~~~a~~~~l~~p~~~~~~~l~l  160 (413)
T d1t5la1          81 PHNAVEYFVSYYDYAQPEAYVPQTDTYIEKDAKINDEIDKLRHSATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSL  160 (413)
T ss_dssp             TTSEEEEECCGGGTCCCSEEETTTTEEECCCSCCCHHHHHHHHHHHHHHHHCSCEEEEECGGGGSCCCCHHHHHHTSEEE
T ss_pred             CCCCEEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHEEEEE
T ss_conf             87745432421211442014743443322345677788888766655203567714653000253257857843105898


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~G~~i~~~~l~~~L~~~GY~r~~~V~~~GeFsvRG~IiDIfp~~~~e~PvRIEffgDeIesIr~Fd~~tQrs~~~~~~v  240 (413)
T d1t5la1         161 RVGMEIERNALLRRLVDIQYDRNDIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHV  240 (413)
T ss_dssp             ETTCSCCHHHHHHHHHHTTCEECSSSCCTTEEEECSSEEEECCTTCSSEEEEEEESSSSEEEEEEEETTTCCBCCCCSEE
T ss_pred             ECCCHHHHHHHHHHHHHHCCCCCCEEEECCEEEEECCHHHHCCCCCCCCCCCEEEECCHHEEEECCCCCCCCCCCCCCEE
T ss_conf             66862528899999998435103100000205775351642478533564030650301103551135457211243179


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~I~Pa~e~i~~~~~~~~a~~~i~~el~~~~~~~~~~~~~~ea~rl~~~~~~d~e~l~e~~~~~gie~y~~~~~~r~~~~~  320 (413)
T d1t5la1         241 AIFPASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLALRPPGST  320 (413)
T ss_dssp             EECCSSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCCTTGGGGHHHHHTCCTTCC
T ss_pred             EEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCC
T ss_conf             96346036269999999999999999999999987785889999998767579999852764444555443204666688


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~tLlDY~~~d~l~~iDE~~~~~~q~~~~~~~~~~r~~~l~e~G~~LP~a~dn~pL~~ee~~~~~~~~i~vsatP~~~e~  400 (413)
T d1t5la1         321 PYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDHGFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYEL  400 (413)
T ss_dssp             CCCHHHHSCTTCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHHTSSCGGGGGSSCCCHHHHHHHCSEEEEEESSCCHHHH
T ss_pred             CCHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCHHH
T ss_conf             73244104787089993626569999999988899899888651657556557976889999864987999579970557


Q ss_pred             ------------C
Q ss_conf             ------------9
Q 003496          278 ------------V  278 (815)
Q Consensus       278 ------------~  278 (815)
                                  +
T Consensus       401 ~~~~~~v~q~irp  413 (413)
T d1t5la1         401 EHSPGVVEQIIRP  413 (413)
T ss_dssp             HHSSSCEEECCCT
T ss_pred             HHCCCEEEEEECC
T ss_conf             7468846886286

>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Stabilizer of iron transporter SufD
family: Stabilizer of iron transporter SufD
domain: Stabilizer of iron transporter SufD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=31200.04  Aligned_cols=1  Identities=0%  Similarity=-1.688  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~GlPt~k~E~WKyT~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf   80 (413)
T d1vh4a_           1 NALQQWHHLFEAEGTKRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALTLDSVRLVF   80 (413)
T ss_dssp             CHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCCTTSTTCTTCCCHHHHTSCEECCCCCCCHHHHHHHCCCCCSEEEEE
T ss_pred             CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCEEEEE
T ss_conf             97899999998628846299999999999729889987281479879974357765677668002000234568548999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 vnG~~~~~ls~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~LN~a~~~~g~~I~V~~~~~~~~PI~i~~~~~~~~~~~~~~  160 (413)
T d1vh4a_          81 VDGRYVPALSDATEGSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVAGEEVNT  160 (413)
T ss_dssp             ETTEECGGGSCCCTTSSCEEEEESCCTTCCCCSSCCHHHHHHHHHCSCEEEEEECTTCCCSSCEEEEEEECCCSSSCEEE
T ss_pred             ECCEECHHCCCCCCCCCEEEECHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCEEECCCCEEEEEECCCCCCCCCC
T ss_conf             89998210056755577288515755404110110012332321025432674125357604541467503644344333


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~r~~I~v~ena~v~iiE~~~~~~~~~~~~n~~~ei~l~~nA~l~~~~iq~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  240 (413)
T d1vh4a_         161 AHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFLL  240 (413)
T ss_dssp             EEEEEEEEECTTCEEEEEEEEEESSSSCEEEEEEEEEEECTTCEEEEEEEECCCTTCEEEEEEEEEECTTCEEEEEEEEC
T ss_pred             CCEEEEEEECCCCHHHHHHHCCCCCCCCCEECCEEEEEECCCCEEEEHHHHHHCCCCCCCCEEEEECCCCCCEEEEECCC
T ss_conf             11145653055202211121145544100002205899526642430334442233421220112003454146532000


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 G~~~~r~~~~~~L~G~~a~~~~~g~~~~~~~q~~D~~~~i~H~~~~t~S~~~~k~vl~d~s~~vf~G~i~V~~~A~~t~a  320 (413)
T d1vh4a_         241 GGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDG  320 (413)
T ss_dssp             CCSEEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEECTTCEEEEEEEEEECTTCTTEEE
T ss_pred             CCCHHHCCCHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHH
T ss_conf             21100110000112000110011023466422433222320155542041343124666640488653035655225665


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~q~~~~llls~~a~~~s~P~Lei~~ddv~~~Hgatvg~id~~~lfYL~sRGi~~~eA~~ll~~gF~~~~~~~~~~~~~~~  400 (413)
T d1vh4a_         321 QMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAAELTEALRDEGLKQ  400 (413)
T ss_dssp             EEEEEEEECSTTCEEEEEEEEEECCSSEEEEEEEEEECCCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             HHHHHHHCCCCCCEEEECCEEEEECCCEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             77665301567744875522899639816994000467898999999976999999999999998999998698299999


Q ss_pred             ------------C
Q ss_conf             ------------9
Q 003496          278 ------------V  278 (815)
Q Consensus       278 ------------~  278 (815)
                                  .
T Consensus       401 ~~~~~i~~~l~~~  413 (413)
T d1vh4a_         401 QVLARIGQRLPGG  413 (413)
T ss_dssp             HHHHHHHTTSTTC
T ss_pred             HHHHHHHHHHCCC
T ss_conf             9999999872489

>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=0  Score=31195.33  Aligned_cols=1  Identities=100%  Similarity=0.537  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~ltl~d~d~~gK~VllRvD~NvPi~~g~I~Dd~RI~~~lpTI~~L~~~gak~Vvl~SH~GRP~~~~~~d~~SL~pva~~   80 (413)
T d1hdia_           1 NKLTLDKLNVKGKRVVMRVDFNVPMAAAQITNNARIKAAVPSIKFCLDDGAKSVVLMSHLGRPDGSPMPDKYSLQPVAAE   80 (413)
T ss_dssp             CBCBGGGSCCTTCEEEEECCCCCCBSSSSBSCCHHHHHHHHHHHHHHHTTCSEEEEECCCSCCCSSCCTTTSCSHHHHHH
T ss_pred             CCCCHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             98754102868998999931587744990897489999999999999879998999537889999977854587999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 L~~~L~~~V~f~~d~~g~~~~~~i~~l~~geilLLENvRF~~~E~~~~~~~~~~~~~~e~~n~~~f~~~La~l~DvyVND  160 (413)
T d1hdia_          81 LKSALGKAVLFLKDCVGPAVEKACADPAAGSVILLENLRFHVEEEGKGKDASGNKAAGEPAKIKAFRASLSALGDVYVND  160 (413)
T ss_dssp             HHHHHTSCCEECSCSSSHHHHHHHHSCCTTEEEECCCGGGSHHHHTEEECTTSCEEECCHHHHHHHHHHHHHTCSEEEEC
T ss_pred             HHHHHCCCEEEECCCCHHHHHHHHHCCCCCEEEEECCHHCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf             99986886066056513556554320234317980221104211134432011000110243699999876328889953


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 AF~~aHR~haS~~gi~~~~~~~G~LmekEi~~L~~~l~~p~~P~vaIlGGaKvsdKi~vi~~L~~k~d~iiigGgmantf  240 (413)
T d1hdia_         161 AFGTAHRAHSSMVGVNLPKKAGAFLMKKELNYFAAAAESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTF  240 (413)
T ss_dssp             CGGGTTCCCHHHHCCCCSCEEECHHHHHHHHHHHHHHTSCCSSEEEEECCSCSGGGHHHHHHHHTTCSEEEECGGGHHHH
T ss_pred             CHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCEEEECCHHHHHH
T ss_conf             42111125762220135642116899999999876540788761699842554338999998875310154035468999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 L~a~~g~~iG~sl~e~~~~~~~~~~~~~~~~~~~~i~lp~d~~~~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~~  320 (413)
T d1hdia_         241 LKVLNNMEIGTSLFDEAGKKIVKNLMSKAAANGVKITLPVDFVTADKFDEQAKIGQATVASGIPAGWMGLDCGPKSSAKY  320 (413)
T ss_dssp             HHHHHCCCBTTCCCCTTGGGTHHHHHHHHHHHTCEEECCCEEEEESSSSTTCCEEEEETTTCBCTTCEEEEECHHHHHHH
T ss_pred             HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHH
T ss_conf             99715974563340322004677777789871984344541354124566555455442113588764431530236788


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~I~~aktI~wNGP~GvfE~~~F~~GT~~i~~~ia~~~~~~a~sivGGGdT~aai~~~g~~~~~~hvSTGGGA~L~~L~  400 (413)
T d1hdia_         321 SEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDNVSHVSTGGGASLELLE  400 (413)
T ss_dssp             HHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHTTCEEEECTTHHHHHHHHTTCTTTSSEECSCHHHHHHHHT
T ss_pred             HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHHC
T ss_conf             88761587799988834566761538999999999985148998999377999999974986798479278799999987


Q ss_pred             ------------C
Q ss_conf             ------------9
Q 003496          278 ------------V  278 (815)
Q Consensus       278 ------------~  278 (815)
                                  -
T Consensus       401 G~~LPgi~aL~~~  413 (413)
T d1hdia_         401 GKVLPGVDALSNV  413 (413)
T ss_dssp             TCCCHHHHTSCBC
T ss_pred             CCCCCHHHHHHCC
T ss_conf             9996246352049

>d2qgma1 c.150.1.3 (A:33-445) Succinoglycan biosynthesis protein BC3205 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: EreA/ChaN-like
superfamily: EreA/ChaN-like
family: EreA-like
domain: Succinoglycan biosynthesis protein BC3205
species: Bacillus cereus [TaxId: 1396]

Probab=100.00  E-value=0  Score=31194.22  Aligned_cols=1  Identities=0%  Similarity=-0.527  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~i~~~a~pl~~~d~~~~~~DL~~L~~~v~dariV~LGEatHGt~Ef~~~r~~l~r~Lvee~Gf~~vA~E   80 (413)
T d2qgma1           1 SGQSVQKNIVKSIQSQANPLKTIEPSKPFEDLKPLKKMIGNAQYVGLGENTHGSSEIFTMKFRLVKYLVTEMGFTNFAME   80 (413)
T ss_dssp             CCSSHHHHHHHHHHHHCEECCCCCTTSCCGGGHHHHHHHTTCSEEEECCSSSCBHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             98427789999999846558778989876789999986479749998468667079999999999999997599789992


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~d~~~~~~vn~yV~~g~g~~~~~~~~~w~~~e~~~lv~WlR~~N~~~~~~~~v~f~G~D~~~~~~~s~~~v~~yl~~~~p  160 (413)
T d2qgma1          81 EDWGNGLKLNEYIQTGKGNPREFLKLLYPTDEIIAMIEWMKDYNADPSNKKKIQFIGLDLKALDQGSFNKVIDYVRLHRP  160 (413)
T ss_dssp             EEHHHHHHHHHHHHHCCSCGGGTSCTTSCBHHHHHHHHHHHHHHHCTTCCSCCEEEEEECSCCCHHHHHHHHHHHHHHCT
T ss_pred             CCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCH
T ss_conf             69588999999986388787887787525177999999999970458978842699744465535469999999986196


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~  240 (413)
T d2qgma1         161 DLLAEVEENYKELSSFTGSIQEYMKLTPKLKEKFKANAERVARLLKDENEQANTEIIPSEYIWAKATASAIEKFTTMLLP  240 (413)
T ss_dssp             TSHHHHHHHHHTGGGSCSCHHHHTTSCHHHHHHHHHHHHHHHHHTSCC-----------CHHHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             78999999974603123478999775176788899999999999997676505432344899999999999999999706


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~RD~~Maenl~~~~~~~~~KiivwAHN~Hi~~~~~~~~~~~~~~G~~L~e~~G~~y~~IG~~~~~G~v~a~~  320 (413)
T d2qgma1         241 NDYPSIIKLHEQYLADHAMWAQETFGGKTMVWAHNIHIAKGIIDEKLYPYVAGQFLKERLDNNYVTIGSTTTEGNFTLYS  320 (413)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHHHHHCSCEEEECCHHHHCSSCSCTTTCSSCHHHHHHHHHGGGEEEEEEEEEEEEEEESC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCEEECCC
T ss_conf             87401377899999999999974789978999554110757565433666589999998488469999873466041257


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~~~~~~~~~~~p~~~~s~e~~l~~~~~~~~~ld~r~~~~~~~~~l~~~r~~r~iG~~y~P~~~~y~~~~~~~~fDa  400 (413)
T d2qgma1         321 EYNPSTGGKITTDTIPQDVKSFNYTLGKVPYKMFLLDNRHLKGQAEKWVKAKRPLLSIGGQILPNSSVYFDTSLLEQFDI  400 (413)
T ss_dssp             CC-----CCCEEEECCCCTTSHHHHHHHSSCSEEEEEGGGCCHHHHHHHHSEEEEECCCSCC-----CEEEEEHHHHCSE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCHHCCCEEEECCCCCCCCCCCHHHHCCE
T ss_conf             77875566303678999952699997135877467552004535678883711211310244588764446895997978


Q ss_pred             ------------C
Q ss_conf             ------------9
Q 003496          278 ------------V  278 (815)
Q Consensus       278 ------------~  278 (815)
                                  .
T Consensus       401 li~i~~ttPa~~~  413 (413)
T d2qgma1         401 IFHIRKTSPSHIK  413 (413)
T ss_dssp             EEEEEEECBCCBC
T ss_pred             EEEECCCCCCCCC
T ss_conf             9997146703129

>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=0  Score=31193.78  Aligned_cols=1  Identities=0%  Similarity=-0.327  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~ki~v~~pIv~l~GDeit~~~~~~i~~~l~~~~~di~~~~~d~G~~~~~~tg~~l~~eaiea~k~~~aiLkGa~~tP~   80 (413)
T d1lwda_           1 ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPD   80 (413)
T ss_dssp             CCCCEECSSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCC
T ss_pred             CCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCC
T ss_conf             99750305777995486379999999999970678886279970788999874996769999999975977788867997


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~s~n~~lR~~ldl~an~RP~~~~~~~~~~~~~~~d~VivREnteg~Y~g~e~~~~~~~~~~i~~~~~  160 (413)
T d1lwda_          81 EARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPK  160 (413)
T ss_dssp             HHHHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEET
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCEECCCCCCCEEEEECC
T ss_conf             32235444432210001568976387458721002578876788887727752254443503423226766320577405


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ria~~af~~a~~~~~~vt~v~K~nvl~~~~glf~~~~~eva~~~p~~~~~  240 (413)
T d1lwda_         161 DGSSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFD  240 (413)
T ss_dssp             TCCCCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             66542233200256652000001332025678999999997159605775046356600479999999999874003564


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~I~~~~~~vd~~~~~lv~~p~~~Vivt~NlfGDIlSDlaa~l~GglGl~pSanig~~~~~~~fe~~HGsap~~ag~~~  320 (413)
T d1lwda_         241 KYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQ  320 (413)
T ss_dssp             HTTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHHHH
T ss_pred             CCEEEEEHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHH
T ss_conf             23799861455555565228988739997563405676677874389777764324787554333346566000000121


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 iagk~iANP~a~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G~~T~DlgG~~~~~~~~~~~~~~~sT~ef~d  400 (413)
T d1lwda_         321 KGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLD  400 (413)
T ss_dssp             TTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHCTTSCCBTTTBCCHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             17765659599999999999973454444579999999999999999779988465887666655555677638999999


Q ss_pred             ------------C
Q ss_conf             ------------9
Q 003496          278 ------------V  278 (815)
Q Consensus       278 ------------~  278 (815)
                                  .
T Consensus       401 aV~~~L~~~l~~~  413 (413)
T d1lwda_         401 TIKSNLDRALGRQ  413 (413)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHCCC
T ss_conf             9999999987529

>d1zjca1 e.60.1.1 (A:3-415) Aminopeptidase S, AMPS {Staphylococcus aureus [TaxId: 1280]}

class: Multi-domain proteins (alpha and beta)
fold: Thermophilic metalloprotease-like
superfamily: Thermophilic metalloprotease-like
family: Thermophilic metalloprotease (M29)
domain: Aminopeptidase S, AMPS
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=0  Score=31192.96  Aligned_cols=1  Identities=0%  Similarity=-0.559  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~f~~~L~k~A~llV~~~l~vqkGe~VlI~a~~~~~~lvral~~~a~~aGA~pV~v~~~d~~i~r~~~~~~~~e~l~~~e~   80 (413)
T d1zjca1           1 NYKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVVYSDPTLKRLKFENESVEHFANHEI   80 (413)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCCTTCCEEEEEETTCHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHHHHSCHHHHHHTSS
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCHHHHCCCCC
T ss_conf             97899999999999983068999989999567439999999999998699648995087899999871899668353202


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~a~i~i~~~~p~~l~~vd~~ki~~~~~a~~~~~k~~~~~~~~~~~~W~i~~~Pt~a~A~~a~~~l  160 (413)
T d1zjca1          81 KSYDVEARMDYVKRGAANLALISEDPDLMDGIDSQKLQAFQQQNARAFKGYMESVQKNQFPWVVAAFPSKAWAKRVYPEL  160 (413)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEEECCCTTTTTTSCHHHHHHHHHHHHHHTHHHHHHHHTTCSCEEEEECCCHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCC
T ss_conf             56679999999865884899726895242037989999999999999899999986476566999568767776645899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~e~~~~~~d~if~a~~lD~~dpv~~w~~~~~~l~~~~~~L~~~~~~~~~~~~~gTDLt~~l~~~~~~~~~~~~~~~~~  240 (413)
T d1zjca1         161 SVEEAYIKFIDEVFDIVRIDGNDPVENWRQHIANLSVYAQKLQQKNYHALHYVSEGTDLTVGLAKNHIWEDATSYVNGKE  240 (413)
T ss_dssp             CHHHHHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEETTEEEEEEECTTBCCBCSEEEGGGTS
T ss_pred             CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCEEEECCCCCCCCCC
T ss_conf             87999999999999750788051799999999999999999854072479943898407999358737716875236777


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~NlP~gEvft~P~~~~~~G~i~~~~~~~~~G~~~~~i~l~f~~G~vv~~~~~~~~~~l~~~l~~d~~a~~~gE~~i  320 (413)
T d1zjca1         241 QAFIANIPTEEVFTAPDRNRVDGYVTNKLPLSYNGTIIDQFKLMFKDGEIIDFSAEKGEAVLKDLINTDEGSRRLGEVAL  320 (413)
T ss_dssp             SEEESBSSCCCEEECEEEEEEEEEEECSSCEEETTEEEEEEEEEEETTEEEEEEEEESHHHHHHHHTSSGGGGSEEEEEE
T ss_pred             CCCCCCCCCCCEEEEECCCCEEEEEEECEECCCCCEECCCCEEEEECCEEEEEECCCHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf             76648899800686131586137999782526298832481899989999999747659999876404866536767753


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 g~n~~~~~~~~~~~~~~L~DEkgt~H~a~G~~Y~~~~~~~~~~~~~~~~~~G~n~s~~H~D~~i~~~~~~i~gv~~dG~~  400 (413)
T d1zjca1         321 VPDDSPISNRNTIFYNTLFDENAACHLAIGSAYAFNIQGGTEMTVEEKIASGLNDSNVHVDFMIGSSDLTIYGIFEDGSK  400 (413)
T ss_dssp             CCSSSTTGGGCCCCSSHHHHTTTSCEEEEECCCGGGBTTGGGCCHHHHHHHTCCCCSCEEEEECCCTTCEEEEECTTSCE
T ss_pred             CCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCHHHCCCCCCCCHHHHHCCCCCCCCEEEEECCCCCCEEEEEEEECCCE
T ss_conf             16886543435442451587489744667756421113665578145401798676457876347871568999818978


Q ss_pred             ------------C
Q ss_conf             ------------9
Q 003496          278 ------------V  278 (815)
Q Consensus       278 ------------~  278 (815)
                                  -
T Consensus       401 ~~I~~~G~f~~~~  413 (413)
T d1zjca1         401 ELVFENGNWASTF  413 (413)
T ss_dssp             EEEEETTEECTTC
T ss_pred             EEEEECCEECCCC
T ss_conf             8999899976769

>d1a0tp_ f.4.3.2 (P:) Sucrose-specific porin {Enterobacterium (Salmonella typhimurium) [TaxId: 90371]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: Porins
family: Maltoporin-like
domain: Sucrose-specific porin
species: Enterobacterium (Salmonella typhimurium) [TaxId: 90371]

Probab=100.00  E-value=0  Score=31188.52  Aligned_cols=1  Identities=0%  Similarity=0.071  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~GfeFhGY~RsG~g~s~~g~~~~~~~~~~~~~~~~g~~gRLGNE~d~y~El~l~~~~~~~~g~~~~~~~~~a~~~~~~~d   80 (413)
T d1a0tp_           1 SGFEFHGYARSGVIMNDSGASTKSGAYITPAGETGGAIGRLGNQADTYVEMNLEHKQTLDNGATTRFKVMVADGQTSYND   80 (413)
T ss_dssp             CCEEEEEEEEEECCEETTSSCCCCCTTCSGGGGGTCCCCCTTCCCSEEEEEEEEEEEECTTSCEEEEEEEEEEEECCCSS
T ss_pred             CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCC
T ss_conf             95168527785734847898654563216565666565424664351798883457781599599999997115655578


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~q~yve~~nl~~f~~~~~~a~~WaGkR~y~r~~dIhi~D~~y~~~sG~GaGieni~lG~g~~~~~~~~~~  160 (413)
T d1a0tp_          81 WTASTSDLNVRQAFVELGNLPTFAGPFKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDVKWNDGLRSNFSLYGR  160 (413)
T ss_dssp             CCGGGCCCEEEEEEEEEESCTTCCGGGTTCEEEEEEEECTTCEEEGGGTEEEEBCEEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             CCCCCCCCHHEEEEHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCEECEEEEECCCCCEEEEEEEEC
T ss_conf             75666530110303464586434677998639744420366567542310468658857564721037884688999942


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~~~~~~~~~~~~~G~~~G~nk~~  240 (413)
T d1a0tp_         161 NFGDIDDSSNSVQNYILTMNHFAGPLQMMVSGLRAKDNDERKDSNGNLAKGDAANTGVHALLGLHNDSFYGLRDGSSKTA  240 (413)
T ss_dssp             EEECTTCGGGEEEEEEEEEEEEETTEEEEEEEEECTTGGGCBCSSSSBSCSSCCSEEEEEEEEEEEEESTTSSEEEEEEE
T ss_pred             CCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCEEEEEEEECCCEECCCCCEEEEH
T ss_conf             56776667875111687531157379999964303773443215654346764465308999996142000358635151


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 lQyg~G~~a~~~~~~~~~~~~~~~~s~Rl~~~G~~~~~~~~~~~~~~~y~~~~d~~~~~~~~~~~s~gvRP~y~~~~~~~  320 (413)
T d1a0tp_         241 LLYGHGLGAEVKGIGSDGALRPGADTWRIASYGTTPLSENWSVAPAMLAQRSKDRYADGDSYQWATFNLRLIQAINQNFA  320 (413)
T ss_dssp             EEEEEETTCSCSBTTCCTTCCTTCEEEEEEEEEEEESSSSEEEEEEEEEEEEESSSSTTCEEEEEEEEEEEEEESSSSEE
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEECCCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCEE
T ss_conf             62375715577565787862799508999986644135876776668999851667789970799999888589668689


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~E~gy~~~~~~~~g~~~~~~~~~~~~K~TlA~~~~~g~~~~fwsRPeiR~faTY~~w~~~~~~~~~~~~~~~~~~~~~  400 (413)
T d1a0tp_         321 LAYEGSYQYMDLKPEGYNDRQAVNGSFYKLTFAPTFKVGSIGDFFSRPEIRFYTSWMDWSKKLNNYASDDALGSDGFNSG  400 (413)
T ss_dssp             EEEEEEEEEEEEECTTGGGCCCEEEEEEEEEEEEEEESSCTTCTTCCCEEEEEEEEEEECGGGGGSCSSSSTTBTTBCSS
T ss_pred             EEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCHHHCCCCCCCCCCCCCCCCC
T ss_conf             99998886640344675366666783589999763132897876779789999999805412200224565454677888


Q ss_pred             ------------C
Q ss_conf             ------------9
Q 003496          278 ------------V  278 (815)
Q Consensus       278 ------------~  278 (815)
                                  -
T Consensus       401 ~~~~fGvQ~E~Ww  413 (413)
T d1a0tp_         401 GEWSFGVQMETWF  413 (413)
T ss_dssp             CEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEC
T ss_conf             8789999998769

>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Bacterial glucoamylase C-terminal domain-like
domain: Glucodextranase, domain A
species: Arthrobacter globiformis [TaxId: 1665]

Probab=100.00  E-value=0  Score=31189.42  Aligned_cols=1  Identities=0%  Similarity=-2.122  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~S~l~lk~~~~~~~~GaiiAapt~~~pe~~~~~~n~d~Yry~W~RDaa~~~~al~~~G~~~~a~~~   80 (413)
T d1ulva1           1 PATSLTGALRTQYDVSLMTVKSHEDKTFPGAFIASLTIPWGQAASAETHREGYHAVWARDMYQSVTALLAAGDEEAAARG   80 (413)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBCSSCCCTTCSBCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             98657889999999999999973468999848875888887666775689871166180599999999986998999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~l~~~~~~~~G~~~~~y~~dg~~~~~~~Q~D~~g~~l~~~~~~~~~~~~~~~~~i~~a~~~l~~~~~~~~~~lWEe~~  160 (413)
T d1ulva1          81 VEWLFTYQQQPDGHFPQTSRVDGTIGQNGIQLDETAFPILLANQIGRTDAGFYRNELKPAADYLVAAGPKTPQERWEETG  160 (413)
T ss_dssp             HHHHHHHTCCTTSCCCSCBCTTSCBCCCCCBTHHHHHHHHHHHHHTCCCHHHHHHTHHHHHHHHHHHCSCBSBCTTSSCC
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             99999985079996056546687767776763038999999999853001678999999999999738898745454678


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 g~~~~T~~~~~~aL~~aa~la~~~gd~~~a~~~~~~A~~i~~~i~~~~~~~~~~~~~~~y~~r~~~~~~~~~~~~~~~~~  240 (413)
T d1ulva1         161 GYSTSTLASQIAALAAAADIAGKNGDAGSAAVYRATADEWQRSTEKWMFTTNGPVGDGKYYLRISATGNPNDGATRDWGN  240 (413)
T ss_dssp             BEEHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTHHHHHEESSCSSTTSCEECSEESSSCTTSCCEEECST
T ss_pred             CCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
T ss_conf             85431189999999999999998398167889999999999999996018655623321011036666654320000123


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~vDas~l~~~~~g~~~~~d~r~~~t~~~i~~~L~~~~~~g~~~~Ry~~D~y~~~~~g~~~~~~~i~t~W~~  320 (413)
T d1ulva1         241 GAGVHPENAVLDGGFLEFVRLGVKAPADPYVADSLAETDASISQETPGGRMWHRYTYDGYGEKADGSPWDGTGIGRLWPL  320 (413)
T ss_dssp             TCCEEEGGGCCBGGGGHHHHTTSSCTTCHHHHHHHHHHHHHHEEEETTEEEECSBTTCCCSCCTTSCCCSSCCCCCBCTH
T ss_pred             CCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             45666677765788763112178798887899999999998546778777420024667657788887633112789999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~a~~~~g~~~~A~~ll~~l~~~~~~~G~LpEqv~~~~~~~~~~~~~~~~~~sa~PlaWS~A~~i~l~~~l~~g~~~  400 (413)
T d1ulva1         321 LSGERGEYALANGQDALPYLETMHSAANAGYMIPEQVWDRDEPTSYGHELGRSTGSASPLSWAMAQYVRLAAGVKAGAPV  400 (413)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHTSCTTCCCCSCBBCCSSCCSSCCCBTSBCSSCBSCHHHHHHHHHHHHHHHHTSCS
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             99999998648788999999999976687886563016788830025778999888776374789999999998669976


Q ss_pred             ------------C
Q ss_conf             ------------9
Q 003496          278 ------------V  278 (815)
Q Consensus       278 ------------~  278 (815)
                                  .
T Consensus       401 ~~~~~~~~~~~~~  413 (413)
T d1ulva1         401 ETPQNVAARYAAG  413 (413)
T ss_dssp             SSCHHHHHHHTSS
T ss_pred             CCCHHHHHHHHCC
T ss_conf             6762899874149

>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Malonamidase E2
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=100.00  E-value=0  Score=31121.01  Aligned_cols=1  Identities=0%  Similarity=-0.860  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~ls~~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~lna~~~~~~~~~~~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~   80 (412)
T d1ocka_           1 MISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYR   80 (412)
T ss_dssp             CCCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCCCCSSSTTTTCEEEEETTBCCSSSCCCTTSGGGT
T ss_pred             CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHH
T ss_conf             98789999999869998999999999999976961598174439860766798688879987661778974166486661


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~a~~V~~L~~aGaii~gkt~~~e~~~~~~~~~~np~~~~~~~GgSSgG~aaava~g~~~~a~GsDtgGSiR~PA  160 (412)
T d1ocka_          81 GWQPRSDAPVVMMLKRAGATIIGKTTTTAFASRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPA  160 (412)
T ss_dssp             TCCCSSCCHHHHHHHHTTCEEEEEECCCGGGSSCCCSCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHH
T ss_pred             CCCCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCH
T ss_conf             78875301477652012433000001666502566543334466666777678761111034566557654023441015


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 a~cGi~GlKPT~G~v~~~g~~~~s~~~dt~Gp~arsv~Dl~~~l~~i~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  240 (412)
T d1ocka_         161 AYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAE  240 (412)
T ss_dssp             HHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGSSCCCCSSCEEEECCCGGGCCCCHHHH
T ss_pred             HHHCCHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             55302101344100123344443201111223445188999999864288721244776444334432323345106777


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~a~~~L~~~G~~v~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  320 (412)
T d1ocka_         241 QGLQAAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDATVGLTPKEYDEARR  320 (412)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHSGGGSCHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf             78888888888764023223453102333455541125789887777640242321245544333210122210001124


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~r~~~~~~~~~~f~~~D~ll~Pt~p~~ap~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQiig~~~~D~~lL  400 (412)
T d1ocka_         321 IGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTGDPRYNRLWTLMGNPCVNVPVLKVGGLPIGVQVIARFGNDAHAL  400 (412)
T ss_dssp             HHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCCCCCCTTTHHHHHHCCCEEEEEEEEETTEEEEEEEEECTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCHHHHH
T ss_conf             67899999999982799999689988776300045687577599999789849983668999607688889999899999


Q ss_pred             -----------C
Q ss_conf             -----------9
Q 003496          278 -----------V  278 (815)
Q Consensus       278 -----------~  278 (815)
                                 .
T Consensus       401 ~~A~~~E~alg~  412 (412)
T d1ocka_         401 ATAWFLEDALAK  412 (412)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999998583

>d1yzya1 c.146.1.1 (A:1-412) Hypothetical protein HI1011 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: YgbK-like
superfamily: YgbK-like
family: YgbK-like
domain: Hypothetical protein HI1011
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=0  Score=31118.42  Aligned_cols=1  Identities=0%  Similarity=0.104  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 i~iIADDlTGA~dt~~~~~~~G~~t~~~~~~~~~~~~~~~dvv~i~t~SR~l~~~eA~~~v~~~~~~l~~~~~~~~~~Kv   80 (412)
T d1yzya1           1 LGVIADDFTGASDIASFLVENGLSTVQMNGVPTQSLNSKVDAIVISLKSRSNPVNEAIEQSLRAYQWLKENGCTQFYFKY   80 (412)
T ss_dssp             CEEEESSHHHHHHHHHHHHTTTCCEEEEESCCSSCCCSCCSEEEEECCCSSSCHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             96895273528999999998799099971788500057899899985778999999999999999999863897158999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~s~~DStlRGnig~Ei~a~~~~~~~~~~~v~PA~P~~gR~t~~G~~~v~g~pl~~t~~a~dP~tP~~~s~l~~ll~~qs~  160 (412)
T d1yzya1          81 CSTFDSTAKGNIGPVTDALLDELNEDFTVITPALPVNGRTIFNGYLFVGDVLLSESGMKNHPITPMVDANLMRLMDAQAK  160 (412)
T ss_dssp             CTTCCCCTTCTHHHHHHHHHHHHTCCCEEECCCBGGGTEEEETTEEEETTEEGGGSGGGGCSSSCCCCCBHHHHHHHHCS
T ss_pred             EECCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCEEEECCEECCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf             73133777678589999999763997699946756577699998999898875676100288989775027777555237


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~v~~i~~~~v~~~~~~~~~~l~~~~~~~~~~vv~Da~t~~dL~~ia~a~~~~~~~~GsaGla~~l~~~~~~~~~~~~~~  240 (412)
T d1yzya1         161 GKTGLVAYADVIKGASRVQECFAELKAQGYRYAVVDAVDNSQLEVLAEAVADFKLVTGGSGLGAYMAARLSGGKKGTNAF  240 (412)
T ss_dssp             SCEEEECHHHHTTCHHHHHHHHHHHHHTTCSEEEECBSSTHHHHHHHHHTTTCSEEEESHHHHHHHHHHHHTSCCGGGCC
T ss_pred             CCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCCCCC
T ss_conf             85354219988645067999999876179866998369889999999973288079954407778887512466654345


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~Lvv~GS~s~~T~~Ql~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  320 (412)
T d1yzya1         241 TPTKGKTVVLSGSCSVMTNKQVEKYREKAPHFQLDVEQAIHNENYIEQLYQWVIANLDSEFAPMVYATVPPDALKAIQHQ  320 (412)
T ss_dssp             CCCSCCEEEEECCCSHHHHHHHHHHTTTSCEEECCHHHHHHCTTHHHHHHHHHHTTTTSSSCCEEECCCCHHHHHHHHTT
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
T ss_conf             78888679998267488999999998509859963899617817999999999998736997588843764555566543


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~~~~~i~~~l~~~~~~l~~~~~~~lv~tGGdTa~av~~~Lg~~~l~~~~ei~pGvp~~~~~~~gl~ivtK~G~fG~  400 (412)
T d1yzya1         321 FGVDQASHAIENTFAKLAAKLKQYGVTNFITAGGETSSIVVQELGFTGFHIGKQIAPGVPWLKAVEEDIFLALKSGNFGK  400 (412)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEESHHHHHHHHHHHTCCEEEEEEEEETTEEEEEESSSSCEEEEECTTCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCC
T ss_conf             01677999999999999999875587869992639999999975998666757426982079766998079997898898


Q ss_pred             -----------C
Q ss_conf             -----------9
Q 003496          278 -----------V  278 (815)
Q Consensus       278 -----------~  278 (815)
                                 -
T Consensus       401 ~D~~~~a~~~~~  412 (412)
T d1yzya1         401 EDFFEYAQGMFL  412 (412)
T ss_dssp             TTHHHHHHHTTC
T ss_pred             HHHHHHHHHHHC
T ss_conf             569999999759

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=100.00  E-value=0  Score=31116.59  Aligned_cols=1  Identities=0%  Similarity=0.071  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~   80 (412)
T d1yaaa_           1 SATLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTS   80 (412)
T ss_dssp             CTTTTTTCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHH
T ss_pred             CCCHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf             94734458747998699999998467898968830677748889988868999999999728654777899877899999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~  160 (412)
T d1yaaa_          81 NAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKS  160 (412)
T ss_dssp             HHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTE
T ss_pred             HHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHCCCCEECCCCCCCCCCC
T ss_conf             99999723447665666526871442046799999987503899877246435740679999859910105633334344


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~  240 (412)
T d1yaaa_         161 LDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKL  240 (412)
T ss_dssp             ECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHT
T ss_pred             CCCHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEEECCCCCCCCCHHHHHHHHHCC
T ss_conf             21101000124578751799944899985445899999999866114887974520010000588656524432223212


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~  320 (412)
T d1yaaa_         241 STVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWH  320 (412)
T ss_dssp             TTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf             46887599982577645676760799975056666788888888889999987736797688999999706847789999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~ls~e~~~~L~~e~~V~~~~g~Ris~~g~~~~~i~~l  400 (412)
T d1yaaa_         321 KDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYV  400 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTSEEEGGGCCTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHCCEEECCCCEEEECCCCHHHHHHH
T ss_conf             89999999999999999999997289888753689952798229699999999996788878988798515988889999


Q ss_pred             -----------C
Q ss_conf             -----------9
Q 003496          278 -----------V  278 (815)
Q Consensus       278 -----------~  278 (815)
                                 .
T Consensus       401 ~~ai~~v~k~~~  412 (412)
T d1yaaa_         401 AKAIDEVVRFYA  412 (412)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHC
T ss_conf             999999998509

>d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Arginine deiminase
domain: Arginine deiminase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=0  Score=31116.02  Aligned_cols=1  Identities=0%  Similarity=-1.124  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~v~sE~g~Lk~Viv~~Pg~e~~~l~p~~~~~~lf~~~~~~~~a~~eh~~f~~~L~~~Gv~V~~l~~~l~e~~~~~~~   80 (412)
T d1rxxa_           1 TKLGVHSEAGKLRKVMVCSPGLAHQRLTPSNCDELLFDDVIWVNQAKRDHFDFVTKMRERGIDVLEMHNLLTETIQNPEA   80 (412)
T ss_dssp             CCSEECCSSSCEEEEEECCCCHHHHTCCTTTTGGGTCSCCCCHHHHHHHHHHHHHHHHTTTCEEEEHHHHHHHHTTSHHH
T ss_pred             CCCCCCCCCCCCEEEEECCCCHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCHHH
T ss_conf             97753777100007896698388773690015664367788999999999999999997798899705768877349588


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plpn~~F~R  160 (412)
T d1rxxa_          81 LKWILDRKITADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKMYREYLGHSSFLLPPLPNTQFTR  160 (412)
T ss_dssp             HHHHHHHHSCHHHHCTTTHHHHHHHHHTSCHHHHHHHHHHCEEGGGSCSCHHHHHHHHHHHHSCCCCEEECCCGGGGCTT
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHEECC
T ss_conf             99999875032334655899999998708989999998626421003444332112211000356533578862121315


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 D~~~~i~~gvii~~m~~~~R~~E~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~EGGDvl~~g~~~l~~g~s~RTn  240 (412)
T d1rxxa_         161 DTTCWIYGGVTLNPMYWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDKDHGSSTLEGGDVMPIGNGVVLIGMGERSS  240 (412)
T ss_dssp             TTEEECSSEEEECCCSSGGGHHHHHHHHHHHHHCHHHHTSCCEEEECCTTSCCTTCCCCGGGEEEEETTEEEEEESSSSC
T ss_pred             CCCCEECCCEEECCCCCHHHCCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCC
T ss_conf             77534669789668997365436799999998580220576310147655547766042560899679689999431050


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~gi~~L~~~l~~~~~~~~v~~~~~p~~~~~~HLDt~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (412)
T d1rxxa_         241 RQAIGQVAQSLFAKGAAERVIVAGLPKSRAAMHLDTVFSFCDRDLVTVFPEVVKEIVPFSLRPDPSSPYGMNIRREEKTF  320 (412)
T ss_dssp             HHHHHHHHHHHHHTTSCSEEEEEECCC--CCCCHHHHEEEEETTEEEECHHHHTTCEEEEEEECTTSTTSEEEEECSSCH
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEECCCEEEECCCCEEEEEHHHCCCCCCEEEECCCCCCCCCEEECCCCCH
T ss_conf             99999999986642806775502678765420025427751798599831242754430442156655551010254317


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~l~~~l~~~~~~~i~~~~d~~~~~~e~~~~~~N~L~l~p~~Vi~~~~~~~~~~~L~~~Gi~vi~v~~~el~~~gGg~h  400 (412)
T d1rxxa_         321 LEVVAESLGLKKLRVVETGGNSFAAEREQWDDGNNVVCLEPGVVVGYDRNTYTNTLLRKAGVEVITISASELGRGRGGGH  400 (412)
T ss_dssp             HHHHHHHTTCSCCEEEECCCSCC--CCSSCCCCCCCEEEETTEEEEETTCHHHHHHHHHTTCEEEEECCTTTTSSSCCTT
T ss_pred             HHHHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCEEEEECCCEEEEECCCHHHHHHHHHCCCEEEEECHHHHHCCCCCCE
T ss_conf             89999971898707955798525555666406520899679989984889999999997899899966567413798867


Q ss_pred             -----------C
Q ss_conf             -----------9
Q 003496          278 -----------V  278 (815)
Q Consensus       278 -----------~  278 (815)
                                 .
T Consensus       401 C~T~pl~Re~i~  412 (412)
T d1rxxa_         401 CMTCPIVRDPID  412 (412)
T ss_dssp             TTCEEEEECCCC
T ss_pred             ECCCCCCCCCCC
T ss_conf             887034627999

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=100.00  E-value=0  Score=31115.68  Aligned_cols=1  Identities=0%  Similarity=-0.327  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~s~~~~~~~~~~~~i~~l~~~~~~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lr   80 (412)
T d1ajsa_           1 APPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFR   80 (412)
T ss_dssp             CCCCTTTTCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHH
T ss_pred             CCCCHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf             99584440876899769999999836899996884178875888999886899999999973787688889977789999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 eaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~  160 (412)
T d1ajsa_          81 TCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRY  160 (412)
T ss_dssp             HHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEEC
T ss_pred             HHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEECC
T ss_conf             99999985157843245662230365305678899999988764047998989994786331689999859927874223


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~  240 (412)
T d1ajsa_         161 WDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAI  240 (412)
T ss_dssp             EETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECHHHHHHHCCCCCCCHHHH
T ss_conf             36233554378999999725677389995589998687899999999999986389789830765654059865651566


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (412)
T d1ajsa_         241 RYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWT  320 (412)
T ss_dssp             HHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHH
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf             65444124321234663223577777345445616788999999999998631535641689999999853888899999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~ls~~~v~~L~~e~gV~~vpg~Ri~~ag~~~~~i~~~  400 (412)
T d1ajsa_         321 GNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYV  400 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTSEEEGGGCCTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHCCEEEECCCEEEECCCCHHHHHHH
T ss_conf             99999999999999999999998489887036658975798459899999999985999981898688336988889999


Q ss_pred             -----------C
Q ss_conf             -----------9
Q 003496          278 -----------V  278 (815)
Q Consensus       278 -----------~  278 (815)
                                 .
T Consensus       401 a~aI~~av~~~~  412 (412)
T d1ajsa_         401 ATSIHEAVTKIQ  412 (412)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999999639

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=0  Score=31114.61  Aligned_cols=1  Identities=0%  Similarity=-0.295  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~pir~~~~~~~~~~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LRea   80 (412)
T d1bw0a_           1 WDVSMSNHAGLVFNPIRTVSDNAKPSPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREA   80 (412)
T ss_dssp             CCCCCCHHHHTCCCHHHHHHHTCCCCCSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHH
T ss_pred             CCCCHHHCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf             98781234568852899999856777799984788697899999852129999999998628777788998688999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~  160 (412)
T d1bw0a_          81 VATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDW  160 (412)
T ss_dssp             HHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTT
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             99999975475435687888886999446222025666543114432046411330144455405864222332223333


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~l~~~~~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~  240 (412)
T d1bw0a_         161 EADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTV  240 (412)
T ss_dssp             EECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSC
T ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf             12467887653111222222334333332201443023211222377666520217875447888764100001223433


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  320 (412)
T d1bw0a_         241 PRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAM  320 (412)
T ss_dssp             CEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             11311555755756877743201240433003555554034553347750343202222333222333322110278999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~~~~~e~l~eal  400 (412)
T d1bw0a_         321 YLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAV  400 (412)
T ss_dssp             HHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHH
T ss_pred             HHHHHHHHHCCCEECCCCCCEEEEEECCHHHCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCHHHHHHHH
T ss_conf             99999987349254378971499995782343788899999999998699999966214899939999738999999999


Q ss_pred             -----------C
Q ss_conf             -----------9
Q 003496          278 -----------V  278 (815)
Q Consensus       278 -----------~  278 (815)
                                 .
T Consensus       401 ~Rl~~~l~~~~~  412 (412)
T d1bw0a_         401 ERIKAFCQRHAA  412 (412)
T ss_dssp             HHHHHHHHHHBC
T ss_pred             HHHHHHHHHCCC
T ss_conf             999999986179

>d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: AmyC N-terminal domain-like
domain: Hypothetical protein TT1467, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=0  Score=31113.66  Aligned_cols=1  Identities=100%  Similarity=0.834  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~~lalvlH~HqP~vr~~~~~~~~e~w~~~a~~e~YlPll~~~~~l~~~~~~~k~t~~lsP~LleqL~D~~l~~~f~~~l   80 (412)
T d1ufaa2           1 MARFALVLHAHLPYVRAHGMWPFGEETLYEAMAETYLPLIRVLERLRAEGVEAPFTLGITPILAEQLADARIKEGFWAYA   80 (412)
T ss_dssp             CEEEEEEEEECCCCCTTSCSTTTSHHHHHHHHHHTHHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHCHHHHHHHHHHH
T ss_conf             96379998257876568987874245999999998888999999998428983399997789999850878888889999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~r~L~~~G~vEl~~~~y~H~ilpll~~~~~~~~  160 (412)
T d1ufaa2          81 KDRLERAQGDYQRYRGTALEASARHQVAFWELTLDHFQRLSGDLVAAFRKAEEGGQVELITSNATHGYSPLLGYDEALWA  160 (412)
T ss_dssp             HHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTSEEEEEECTTCBCGGGCSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCCCHHHHHH
T ss_conf             99998750556532340667888888999999999999965458999999997598688835412333321796799999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 Qi~~~~~~~~~~fG~~P~G~W~~E~a~s~~~l~~~~~~g~~~~~~~gl~~iL~~~Gi~y~~~d~~~l~~~~~~~~~~~~~  240 (412)
T d1ufaa2         161 QIKTGVSTYRRHFAKDPTGFWLPEMAYRPKGPWKPPVEGPPEGVRPGVDELLMRAGIRYTFVDAHLVQGGEPLSPYGEAA  240 (412)
T ss_dssp             HHHHHHHHHHHHHSSCCCBEECGGGCBCCSEEECCSSSSSCCEEECCHHHHHHHTTCCEEEECHHHHHCSCCCCC-----
T ss_pred             HHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEECHHHHHCCCCCCCCCCCC
T ss_conf             99999999999759998867674222044113433321442102452889999739978997749985078766555556


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~y~~~~~~~~v~~ffRD~~lSd~I~~~~~Gf~~~~~~~e~a~~d~~~~l~~~r~t~~~~~~~~~~~~Dgen  320 (412)
T d1ufaa2         241 LGPVESQEATYHVHELESGLRVLARNPETTLQVWSADYGYPGEGLYREFHRKDPLSGLHHWRVTHRKADLAEKAPYDPEA  320 (412)
T ss_dssp             ---CCCCGGGGSCEECTTSCEEEEBCHHHHHHHHCTTTSGGGSTTSBCSSCCCTTTCCCCEECCCSSCCGGGCEECCHHH
T ss_pred             CCCCCCCCCCEEEECCCCEEEEEECCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf             67533345650330489738999668777546332326988765356665221334489987113467855361068899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 awe~~~~~a~~Fl~~l~~~~~~~~~~ivv~~~D~ElFGhww~eg~~fL~~l~~~l~~~~~i~~tT~se~l~~p~~~v~lp  400 (412)
T d1ufaa2         321 AFAKTEEHARHFVGLLERLAGRHPEGVILSPYDAELFGHWWYEGVAWLEAVLRLLAQNPKVRPVTAREAVQGPAVRTALP  400 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGBTTTBTTHHHHHHHHHHHHHTCSSEEECCHHHHTCSCCEECCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHCCCCEEECC
T ss_conf             99998977999999999875058887589445588604024310999999999863189839976999982889714258


Q ss_pred             -----------C
Q ss_conf             -----------9
Q 003496          278 -----------V  278 (815)
Q Consensus       278 -----------~  278 (815)
                                 .
T Consensus       401 ~sSWg~gg~~~v  412 (412)
T d1ufaa2         401 EGSWGRGGDHRV  412 (412)
T ss_dssp             SBCSSGGGSSTT
T ss_pred             CCCCCCCCCCCC
T ss_conf             988767898889

>d1t3ca_ d.92.1.7 (A:) Botulinum neurotoxin {Clostridium botulinum, serotype E [TaxId: 1491]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Clostridium neurotoxins, catalytic domain
domain: Botulinum neurotoxin
species: Clostridium botulinum, serotype E [TaxId: 1491]

Probab=100.00  E-value=0  Score=31042.96  Aligned_cols=1  Identities=0%  Similarity=-1.026  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~InnFNyndPVnn~~I~~~r~~~~~~~~KAFkI~~nIWViPER~~~~t~p~d~~pp~~~~~~d~~yYDpnyLsTD~EKD   80 (411)
T d1t3ca_           1 PKINSFNYNDPVNDRTILYIKPGGCQEFYKSFNIMKNIWIIPERNVIGTTPQDFHPPTSLKNGDSSYYDPNYLQSDEEKD   80 (411)
T ss_dssp             CCCCCCCTTSCCCSSSEEEEECTTCSSCEEEEEEETTEEEEEEECCTTCCGGGGSCSCSTTTTSSCCBCTTTTCSHHHHH
T ss_pred             CCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHH
T ss_conf             97666667898899728999448899712435620776875111247778212489732346887513753145621788


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~FLk~iIKLf~RINs~~~G~~LL~~Is~aiPf~G~~~t~~~ef~~~~~~~~n~~~s~~~~~~~~~NlvIfGPg~nI~en~  160 (411)
T d1t3ca_          81 RFLKIVTKIFNRINNNLSGGILLEELSKANPYLGNDNTPDNQFHIGDASAVEIKFSNGSQDILLPNVIIMGAEPDLFETN  160 (411)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHHHHTCCCCSCCTTSCTTSCCCCTTTCEEEECTTSCEEEECCSEEEEECCSBTTCCE
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCHHHEEEEEEEECCCCCCCCCC
T ss_conf             99999999999863745799999999736875789999853311355430356336885201310269987885425665


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~n~~~s~nGfGt~~~i~F~P~~t~~f~~~~~~~F~~DPAl~L~heLIhsLh~LYGIk~i~~~~~i~~~~~~~~  240 (411)
T d1t3ca_         161 SSNISLRNNYMPSNHGFGSIAIVTFSPEYSFRFNDNSMNEFIQDPALTLMHQLIHSLHGLYGAKGITTKYTITQKQNPLI  240 (411)
T ss_dssp             EEECCCGGGCCGGGTTSCCCEEEECCTTEEEEEECTTSCEEECCHHHHHHHHHHHHHHHHTTCCTTTTTCEECTTTTTCC
T ss_pred             CEEEEECCCCCHHHCCCCEEEEEEECCCEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf             03787405776322476504799976634786136777714248899999999999987618667887642101000556


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~v~~eelltfGG~D~~~I~t~~~~~~~~~~l~~f~~ia~~l~~i~~~n~~~n~yK~~~~~Ky~~~~d~~g~~~vN~  320 (411)
T d1t3ca_         241 TNIRGTNIEEFLTFGGTDLNIITSAQSNDIYTNLLADYKKIASKLSKVQVSNPLLNPYKDVFEAKYGLDKDASGIYSVNI  320 (411)
T ss_dssp             SCTTCEEHHHHHHHCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTSCCSCGGGHHHHHHHHHHTTEEECTTSCEEECH
T ss_pred             HCCCCCCCEEEEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEH
T ss_conf             41477554000300687800048711677999999999999999888627884178999999998577657887288548


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~kF~~~y~~l~~fTE~~~~~~f~v~~r~~Y~~~y~~~~~~nlldd~iYti~eGFNi~nl~~n~~GQN~~~N~~~~~~i~~  400 (411)
T d1t3ca_         321 NKFNDIFKKLYSFTEFDLATKFQVKCRQTYIGQYKYFKLSNLLNDSIYNISEGYNINNLKVNFRGQNANLNPRIITPITG  400 (411)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHTCCCCSCSCSCCCEEEESCTTCTTTCBTTTBTCCGGGGGGGGGGBTTTSGGGEECCTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf             99999999986223344668886887776886357632255467653221467433432001367653238465346785


Q ss_pred             ----------C
Q ss_conf             ----------9
Q 003496          278 ----------V  278 (815)
Q Consensus       278 ----------~  278 (815)
                                -
T Consensus       401 ~glv~~~~~~C  411 (411)
T d1t3ca_         401 RGLVKKIIRFC  411 (411)
T ss_dssp             TTHHHHHSSCC
T ss_pred             CHHHHHHHHCC
T ss_conf             20588776339

>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: N-acylglucosamine (NAG) epimerase
domain: Putative NAG isomerase YihS
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=0  Score=31041.81  Aligned_cols=1  Identities=0%  Similarity=-0.891  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~r~wL~~~~~~l~~~~~~~~~~gGF~~l~~dG~~~~~~~k~~~~~aR~~~~fs~a~~~g~~~~~~~A~~g~~f   80 (411)
T d2afaa1           1 KWFNTLSHNRWLEQETDRIFNFGKNAVVPTGFGWLGNKGQIKEEMGTHLWITARMLHVYSVAASMGRPGAYDLVDHGIKA   80 (411)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHGGGEETTEECCBCTTSCBCGGGCEEHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             97687777899999999999864617789972346899897888772147768999999999975897799999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 L~~~~~d~~~Gg~~~~~~~~~~~d~~k~~Y~~AF~l~ala~~~~~g~~~~~~~a~~~~~~l~~~~~~~~~G~~~~~~~~~  160 (411)
T d2afaa1          81 MNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVTTGHPEARKLLDYTIEVIEKYFWSEEEQMCLESWDEA  160 (411)
T ss_dssp             TTTTTBCTTTSSBCSEECSSSEEECCEEHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHTEETTTTEECCEECTT
T ss_pred             HHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCC
T ss_conf             99856767998489862699986532104889999999999988588889999999999999996075689743220555


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~n~~mhl~eA~~~l~~at~d~~~~~~a~~~~~~~~~~~~~~~~~~l~E~f~~dw~~~~~~~~~~~~~~~~~  240 (411)
T d2afaa1         161 FSQTEDYRGGNANMHAVEAFLIVYDVTHDKKWLDRALRIASVIIHDVARNGDYRVNEHFDSQWNPIRDYNKDNPAHRFRA  240 (411)
T ss_dssp             SCCBCSCEEHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHCCCCCGGGTTCCCCEECTTCCBCTTTTTTCTTCCTTC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHCCCCCCCCCC
T ss_conf             67754424467448999999999884288999999999999888765156678411112666541443301264324564


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~pGH~iE~aWlll~~~~~~~~~~~~~~~~~l~~A~~l~~~~~~~g~d~d~~gg~~~~~~~~g~~~~~~k~~W~qaEa  320 (411)
T d2afaa1         241 YGGTPGHWIEWGRLMLHLHAALEARFETPPAWLLEDAKGLFHATIRDAWAPDGADGFVYSVDWDGKPIVRERVRWPIVEA  320 (411)
T ss_dssp             SSBCHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHBSCSSSSSBCSCBCTTSCBSSCCEEHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHH
T ss_conf             33474138899999999999973134567299999999999999985726578980584015899967777455599999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 i~a~l~ly~~tgd~~yl~~a~~~~~~~~~~f~D~~~G~W~~~l~~~g~p~~~~~~g~~~~yH~~~a~~~~~~~~~~~~~~  400 (411)
T d2afaa1         321 MGTAYALYTLTDDSQYEEWYQKWWDYCIKYLMDYENGSWWQELDADNKVTTKVWDGKQDIYHLLHCLVIPRLPLAPGLAP  400 (411)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCTTTSSBCSEECTTSCBCC----CCCCCTTTHHHHTGGGSCSSSCHHH
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHH
T ss_conf             99999999866989999999999999998687999983464589997998888999987206999998615889974218


Q ss_pred             ----------C
Q ss_conf             ----------9
Q 003496          278 ----------V  278 (815)
Q Consensus       278 ----------~  278 (815)
                                .
T Consensus       401 ~~~~~~~~~~~  411 (411)
T d2afaa1         401 AVAAGLLDINA  411 (411)
T ss_dssp             HHHTTCTTTTC
T ss_pred             HHHCCCCCCCC
T ss_conf             88701346689

>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Bni1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=31039.38  Aligned_cols=1  Identities=0%  Similarity=-1.589  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~PkP~~klK~l~W~ki~~~~~tiW~~i~~~~~~~~~~~~~~~~~le~~F~~k~~~~~~~~~~~~~~~~~lLd~kr~qni   80 (411)
T d1ux5a_           1 KYPRPHKKLKQLHWEKLDCTDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLASKRKEDLQKITFLSRDISQQF   80 (411)
T ss_dssp             CCCCCSSCBCCCCCCCCSSCCSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHHHHHHHHTTTSBCCSCHHHHHHH
T ss_pred             CCCCCCCCCCCCCCEECCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             96989999989776159998988200204410036788663099999986447777776666666662001767899999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~I~L~~~~~~s~~~i~~ai~~~d~~~l~~~~l~~ll~~~~~~~~~~~~l~~~lPt~eE~~~l~~~~~~~~~~~d~~~L~~  160 (411)
T d1ux5a_          81 GINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQR  160 (411)
T ss_dssp             HHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCCCCSSCSTTBCH
T ss_pred             HHHHHHCCCCCHHHHHHHHHHCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHCCH
T ss_conf             89998706999999999998368542487899999830210134799999817993789999999851445478454387


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~Eqf~~~l~~~~i~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~~~A~GF  240 (411)
T d1ux5a_         161 ADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSKQAQGF  240 (411)
T ss_dssp             HHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSCGGGCCSCC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf             99999999862334499999999999999999999999999999999999957679999999999860625899871235


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 kL~sL~kL~d~Ks~d~~~tLL~yiv~~~~~~~p~l~~~~~el~~v~~a~~~~~~~l~~~~~~L~~~l~~i~~~~~~~~~~  320 (411)
T d1ux5a_         241 KLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLS  320 (411)
T ss_dssp             CGGGGGGSSSCBCTTSCSBHHHHHHHHHHHHCGGGGGHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTT
T ss_pred             EHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             23898876521179998018999999999869075332877888998861899999999999999999999999862025


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~~~~d~f~~~~~~fl~~~~~~~~~l~~~~~~~~~~~~~~~~yfGEd~~~~~~~~~fF~~~~~F~~~~~~a~~en~~  400 (411)
T d1ux5a_         321 DSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLA  400 (411)
T ss_dssp             CTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             40002511169999999999999999999999999999999999983899888789999999999999999999999999


Q ss_pred             ----------C
Q ss_conf             ----------9
Q 003496          278 ----------V  278 (815)
Q Consensus       278 ----------~  278 (815)
                                .
T Consensus       401 ~~e~e~~~~k~  411 (411)
T d1ux5a_         401 AEEEERLYIKH  411 (411)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHCCC
T ss_conf             99999987209

>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: Cytochrome P450
superfamily: Cytochrome P450
family: Cytochrome P450
domain: Cytochrome p450 152a1 (Bs-beta)
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=0  Score=31034.60  Aligned_cols=1  Identities=0%  Similarity=-1.591  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      =                                                                               
T Consensus         1 p~~~~~~~~l~~~~~~~~f~~~~~~kyg~~if~~~~~g~~~vvv~~pe~i~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~   80 (411)
T d1izoa_           1 PHDKSLDNSLTLLKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFYDTDRFQRQNALPKRVQKSLFGVNAIQ   80 (411)
T ss_dssp             CBCCCTTHHHHHHHHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHTCTTTEECTTCSCHHHHTTTTCTTCGG
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECHHHHHHHHCCCCCEECCCCCHHHHHHHCCCCCCC
T ss_conf             98997014999997799999999999799769999889528999799999999769997113777287777644899645


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~dg~~h~~~R~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~l~~~v~~~~~g~~~~~~~~~~~~~~  160 (411)
T d1izoa_          81 GMDGSAHIHRKMLFLSLMTPPHQKRLAELMTEEWKAAVTRWEKADEVVLFEEAKEILCRVACYWAGVPLKETEVKERADD  160 (411)
T ss_dssp             GCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHTTSSEEEHHHHHHHHHHHHHHHHHTCCCCTTTHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             77808999999999873199999999999999999999985425751299999999998888874887647999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~k~~~a~~~~~~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~ag~~  240 (411)
T d1izoa_         161 FIDMVDAFGAVGPRHWKGRRARPRAEEWIEVMIEDARAGLLKTTSGTALHEMAFHTQEDGSQLDSRMAAIELINVLRPIV  240 (411)
T ss_dssp             HHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTSHHHHHHHCBCTTSCBCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC
T ss_conf             99999876321310399999999999999999998621224586322899999986751775311013456665320332


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 tts~~l~~~l~~L~~~P~vq~kl~~e~~~~l~a~i~E~lRl~p~~~~~~r~~~~d~~i~g~~ipkgt~V~~~~~~~~~dp  320 (411)
T d1izoa_         241 AISYFLVFSALALHEHPKYKEWLRSGNSREREMFVQEVRRYYPFGPFLGALVKKDFVWNNCEFKKGTSVLLDLYGTNHDP  320 (411)
T ss_dssp             THHHHHHHHHHHHHHSTHHHHHHHTCCHHHHHHHHHHHHHHSCCCCEEEEEECSCEEETTEEECTTCEEEEEHHHHHTCT
T ss_pred             CCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHCCC
T ss_conf             30288999999987310123221001330499999999986503322344333334431043464221101355530442


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~p~~F~PeR~~~~~~~~~~~~pFg~G~~~~~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~p~  400 (411)
T d1izoa_         321 RLWDHPDEFRPERFAEREENLFDMIPQGGGHAEKGHRCPGEGITIEVMKASLDFLVHQIEYDVPEQSLHYSLARMPSLPE  400 (411)
T ss_dssp             TTSSSTTSCCGGGGTTCCCCSSSCCTTCSSCTTSSSCCTTHHHHHHHHHHHHHHHHHTEEEECCSCCCCCCSSSSSCCCT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCC
T ss_conf             00899562186535899999776479899899988088439999999999999999826898179986887255377568


Q ss_pred             ----------C
Q ss_conf             ----------9
Q 003496          278 ----------V  278 (815)
Q Consensus       278 ----------~  278 (815)
                                .
T Consensus       401 ~~~~~~~~~Rr  411 (411)
T d1izoa_         401 SGFVMSGIRRK  411 (411)
T ss_dssp             TCCEEEEEEEC
T ss_pred             CCCEEEEEECC
T ss_conf             99079988693

>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: Catalase-peroxidase KatG
domain: Catalase-peroxidase KatG
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=0  Score=30969.54  Aligned_cols=1  Identities=0%  Similarity=-0.295  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~wwp~~~~~~~l~~~~~~~~p~~~~f~y~~~~~~ld~~a~~~d~~~l~~~s~~wwpaD~G~ygP~lVRl   80 (410)
T d2ccaa1           1 MKYPVEGGGNQDWWPNRLNLKVLHQNPAVADPMGAAFDYAAEVATIDVDALTRDIEEVMTTSQPWWPADYGHYGPLFIRM   80 (410)
T ss_dssp             CCCGGGTCCGGGTSTTCCCGGGGSCSCGGGCTTCTTCCHHHHHTTCCHHHHHHHHHHHHTSCCTTSCCGGGCCHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf             98987899766628644587555148877899999862899986269999999999998544335765456633001100


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 AWHsAGTYR~~DgRGGanGg~iRfaPe~sWp~N~~LdkAr~LL~piK~ky~~~iS~ADLi~LAG~vAiE~mGg~~i~f~~  160 (410)
T d2ccaa1          81 AWHAAGTYRIHDGRGGAGGGMQRFAPLNSWPDNASLDKARRLLWPVKKKYGKKLSWADLIVFAGNCALESMGFKTFGFGF  160 (410)
T ss_dssp             HHHHHTTCCTTTCCCSSTTCGGGSTTGGGCGGGTTHHHHHHTTHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCCCSCCCB
T ss_pred             HHHHHCEEECCCCCCCCCCCEECCCHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEECCEECCCCCCCCC
T ss_conf             22331301212677899877466541115312231899999988888760546567660336350210141255112455


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 GR~D~~~~~~~~~g~~~~~~~~~R~~~~~el~d~l~~~~m~li~~np~g~~g~pd~~~~a~~lRd~f~rMglnD~E~VAL  240 (410)
T d2ccaa1         161 GRVDQWEPDEVYWGKEATWLGDERYSGKRDLENPLAAVQMGLIYVNPEGPNGNPDPMAAAVDIRETFRRMAMNDVETAAL  240 (410)
T ss_dssp             CCCCCSSCCCCCCCSCSSTTCCCCEETTTEECTTCCSSSTTCSSSCTTSGGGCCCHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             54435544200378866377899857632456754444458767787534689871017999999998706871766533


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 iaGgHtlGk~Hg~~~~~~~g~~p~~a~~~~~G~g~~~~~~~~~~~~~~~sG~eg~WT~~P~~~dN~yF~~Ll~~~we~~k  320 (410)
T d2ccaa1         241 IVGGHTFGKTHGAGPADLVGPEPEAAPLEQMGLGWKSSYGTGTGKDAITSGIEVVWTNTPTKWDNSFLEILYGYEWELTK  320 (410)
T ss_dssp             HHHHHTSCCCCBSSCGGGBCCCGGGSCGGGTTCCCCBCSTTSSGGGCBSSSCCCCCCSCTTSCSSHHHHHHHHSCEEEEE
T ss_pred             HCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECC
T ss_conf             12421113346788734257784658702157755688787778555367865547668514535777541356515214


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 sp~g~~qw~~~d~~~~~~~pda~~~~~~~~~ml~tDlaL~~Dp~~r~iae~ya~d~d~F~~dFa~AW~KL~hrDmgp~~r  400 (410)
T d2ccaa1         321 SPAGAWQYTAKDGAGAGTIPDPFGGPGRSPTMLATDLSLRVDPIYERITRRWLEHPEELADEFAKAWYKLIHRDMGPVAR  400 (410)
T ss_dssp             CTTSCEEEEEGGGTTTTCBCCTTSCCCBCCEECHHHHHHHHSHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCSGGG
T ss_pred             CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf             45655310355777777777776776678764226677520987899999997099999999999999986125796342


Q ss_pred             ---------C
Q ss_conf             ---------9
Q 003496          278 ---------V  278 (815)
Q Consensus       278 ---------~  278 (815)
                               .
T Consensus       401 ~~g~~~p~e~  410 (410)
T d2ccaa1         401 YLGPLVPKQT  410 (410)
T ss_dssp             CBSTTCCSCC
T ss_pred             CCCCCCCCCC
T ss_conf             0689999889

>d1p1ja1 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phosphate synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Myo-inositol 1-phosphate synthase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=30965.76  Aligned_cols=1  Identities=0%  Similarity=0.238  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~v~s~~~~y~~~~i~~~y~y~~t~v~~~~~g~~~v~p~~~~~~f~t~~~~p~klGVmlVG~GGnngTT~~aGv~An   80 (410)
T d1p1ja1           1 ITSVKVVTDKCTYKDNELLTKYSYENAVVTKTASGRFDVTPTVQDYVFKLDLKKPEKLGIMLIGLGGNNGSTLVASVLAN   80 (410)
T ss_dssp             CCEEEECCTTEEEETTEEEEEEEEEEEEEEECTTSEEEEEEEEEEEEEEEECCCCSSEEEEEETTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCEEECCCEEEEEEEECCEEEEECCCCEEEEEEEEEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             96569828980773411799988510389976897089987567789994256786478998417852899999999997


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 k~gl~w~tk~G~~~pny~GSltq~stirlG~~~~g~~~~~p~kd~lPl~~p~DiVfGGWDI~~~nl~eAa~rA~VLd~~l  160 (410)
T d1p1ja1          81 KHNVEFQTKEGVKQPNYFGSMTQCSTLKLGIDAEGNDVYAPFNSLLPMVSPNDFVVSGWDINNADLYEAMQRSQVLEYDL  160 (410)
T ss_dssp             HTTCCEEETTEEECCCCTTCHHHHCEEEEEECTTSCEEEEEGGGSSCCCCGGGEEEEEECSSCCCHHHHHHHHTCSCHHH
T ss_pred             HCCCCCCCCCCCCCCCCCCCEEEECEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHCCCCCHHH
T ss_conf             62786333556546763230210031431455788845663776188898412789245699988999998769999899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 l~ql~~~L~~i~P~psV~~~dfiaanq~~ra~nvi~~d~~~~~~~~sk~e~ve~Ir~DIr~Fk~~n~lDrVVVlWtASTE  240 (410)
T d1p1ja1         161 QQRLKAKMSLVKPLPSIYYPDFIAANQDERANNCINLDEKGNVTTRGKWTHLQRIRRDIQNFKEENALDKVIVLWTANTE  240 (410)
T ss_dssp             HHHHHHHHTTCCCBCBCCCGGGSCGGGGGGCCCBSCBCTTSCBCSCCHHHHHHHHHHHHHHHHHHTTCSCEEEEECSCCC
T ss_pred             HHHHHHHHHCCCCCCCEECCHHHHCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf             99999998638634320060555212112102322456545546655899999999999999987389748999458887


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 r~~~~~p~v~~t~e~l~~ai~~n~~eIsPS~lYA~AAI~eG~pyvNgsPq~t~vPal~eLA~~~gv~iaG~DfKdslLA~  320 (410)
T d1p1ja1         241 RYVEVSPGVNDTMENLLQSIKNDHEEIAPSTIFAAASILEGVPYINGSPQNTFVPGLVQLAEHEGTFIAGDDLKDSLLAT  320 (410)
T ss_dssp             CCCCCCTTTTSSHHHHHHHHHTTCTTCCHHHHHHHHHHHTTCCEEECSCSCCCCHHHHHHHHHHTCCEEESSBCHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCHHHHHHHH
T ss_conf             68888832124399999887559987787999999999739984468864456579999984279458715124322345


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 pli~dL~vl~e~~trI~~~~dg~vl~d~~~f~~~~~Vls~Lsyl~KAPl~p~g~~vvnal~~Qr~~len~~ra~~Gl~p~  400 (410)
T d1p1ja1         321 PLIIDLLVMTEFCTRVSYKKVDPVKEDAGKFENFYPVLTFLSYWLKAPLTRPGFHPVNGLNKQRTALENFLRLLIGLPSQ  400 (410)
T ss_dssp             HHHHHHHHHHHHHHTEEEEECBTTBTTCSCCBCCCSBCGGGGGGBSSCCCCTTCCCCCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHEEEEEECCCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             89999999887650368621765457622162153089898887538989999965016888999999999997289986


Q ss_pred             ---------C
Q ss_conf             ---------9
Q 003496          278 ---------V  278 (815)
Q Consensus       278 ---------~  278 (815)
                               -
T Consensus       401 ~~m~le~~l~  410 (410)
T d1p1ja1         401 NELRFEERLL  410 (410)
T ss_dssp             CCCCHHHHCC
T ss_pred             CCCEEEEECC
T ss_conf             6651146329

>d1kfsa2 e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragment) {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: DNA polymerase I
domain: DNA polymerase I (Klenow fragment)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=30963.54  Aligned_cols=1  Identities=0%  Similarity=-1.091  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~g~~~~~~~iE~~~~~~la~Me~~Gi~vD~e~l~~~~~~~~~~~~~l~~~~~~~~g~~fn~~S~~ql~~~Lf~~lgl~~   80 (410)
T d1kfsa2           1 HKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKP   80 (410)
T ss_dssp             CHHHHHHHHHTHHHHHHHHHHHHHHCBCBCHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCSCTTTTSHHHHTTTSSCSC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf             99689999999988999999999739898899999999999999999999999995990899999999999997429998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~t~~g~~~t~~~~L~~~~~~~~~~~~l~~~r~~~k~~~~~~~~~~~~~~~~~gri~~~~~~~gt~TGR~s~s~pnlQn  160 (410)
T d1kfsa2          81 LKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQN  160 (410)
T ss_dssp             CCCCC----TTTCCHHHHHTTTCHHHHHHHHHHHHHHHHHHTTTTGGGGBCTTTSSBCCEEESSCCSSSCCEEESSCGGG
T ss_pred             CCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEECCCCCCCCCCCC
T ss_conf             76478898554055410112223899999999999999887652433125778995412575124200232136863035


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~P~~~~~~~~iR~~fia~~G~~lv~~D~sqiE~Rv~A~ls~D~~l~~~~~~g~D~h~~~A~~~~~~~~~~~~~~~R~~aK  240 (410)
T d1kfsa2         161 IPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAK  240 (410)
T ss_dssp             SCSSSHHHHHHHTTBBCCTTEEEEEEEETTHHHHHHHHHTTCHHHHHHHHTTCCHHHHHHHHHTTCCTTTCCHHHHHHHH
T ss_pred             CCCCCCCCHHHHHEEECCCCCEEEEECHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHHHHHHCCCCCHHCCCCHHHHHH
T ss_conf             78887423255632736999779985545384443444676224788885265067641999819973210220043320


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~g~~YG~G~~~la~~l~~s~~eA~~~~~~~~~~~p~i~~~~~~~~~~a~~~g~v~t~~Grr~~~~~~~~~~~~~r~~  320 (410)
T d1kfsa2         241 AINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAA  320 (410)
T ss_dssp             HHHHHHHTTCCHHHHHHHHTCCTTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSEEECTTCCEEECTTTTCSSHHHHHH
T ss_pred             HEEEEHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCHHHHHHH
T ss_conf             31230141356778998809899999999999988787846899999999997595530368503699754405878888


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~r~a~N~~iQg~aadi~k~a~~~i~~~l~~~~~~~~~v~~VHDEiv~ev~~~~~~~~~~~i~~~M~~~~~~~vPl~~e~  400 (410)
T d1kfsa2         321 AERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTRLDVPLLVEV  400 (410)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEEETTEEEEEEETTTHHHHHHHHHHHHHHSSCSSSCCCEEE
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf             88888652013389999999999999999852899889998453258998389999999999999846456898468320


Q ss_pred             ---------C
Q ss_conf             ---------9
Q 003496          278 ---------V  278 (815)
Q Consensus       278 ---------~  278 (815)
                               -
T Consensus       401 ~~g~~w~e~h  410 (410)
T d1kfsa2         401 GSGENWDQAH  410 (410)
T ss_dssp             EEESBHHHHC
T ss_pred             CCCCCHHHHC
T ss_conf             5628868829

>d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId: 39650]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Exomannosidase
species: Cellvibrio mixtus [TaxId: 39650]

Probab=100.00  E-value=0  Score=30963.16  Aligned_cols=1  Identities=0%  Similarity=-1.590  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~v~~~g~~f~~nG~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~l~~~k~~G~N~iR~~~~~~~~~~~~~~~~~~~~~   80 (410)
T d1uuqa_           1 EHFVRVNGGHFELQGKPYVITGVNMWYAAYLGAPNEVGDRDRLAKELDNLKAIGVNNLRVLAVSEKSEINSAVKPAVTNG   80 (410)
T ss_dssp             CCCCEEETTEEEETTEEECEEEEECTTHHHHTCSSTTCCHHHHHHHHHHHHHTTCCEEEEECCCBCCCSTTSCSSCSBSS
T ss_pred             CCCEEEECCEEEECCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             99879989999999989999999317765566567879999999999999977995999687366545555568776554


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~g~~de~gl~~~d~~l~~a~~~Gi~vi~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (410)
T d1uuqa_          81 FGNYDETLLQGLDYLLVELAKRDMTVVLYFNNFWQWSGGMTQYMAWIEGEPVQDPNVTNEWEAFMAKSASFYRSEKAQQE  160 (410)
T ss_dssp             TTCBCHHHHHHHHHHHHHHHHTTCEEEEECCBSSSTTCHHHHHHHHHHTCCCCCHHHHCCHHHHHHHHHGGGGCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             33245889999999999999739856874034556657754465312477767655555553335665300368999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~l~NE~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~dp~~~v~~~~~~~~~~  240 (410)
T d1uuqa_         161 YRKTLEKIITRVNSINGKAYVDDATIMSWQLANEPRPGNSQTTAEEKQIYIDWVHAAAAYIKTLDAHHLVSSGSEGEMGS  240 (410)
T ss_dssp             HHHHHHHHHTCBCTTTCCBGGGCTTEEEEESCBSCCSCSTTCCHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCCSGGGT
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC
T ss_conf             99999999986546666765577067666533665776676543320346677777775455408995576424566666


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~D~~s~h~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kPv~i~E~G~~~~~~~~~  320 (410)
T d1uuqa_         241 VNDMQVFIDAHATPDIDYLTYHMWIRNWSWFDKTKPAETWPSAWEKAQNYMRAHIDVAKQLNKPLVLEEFGLDRDMGSYA  320 (410)
T ss_dssp             TTCHHHHHHHHCSTTCCSEEEEECTTTTTSSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCGGGCCC
T ss_pred             CCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf             44321013440477655688612754446555433322222015666778888888876249976650255656788888


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~d~~~~~~  400 (410)
T d1uuqa_         321 MDSTTEYRDNYFRGVFELMLASLEQGEPSAGYNIWAWNGYGRTTRANYWWQEGDDFMGDPPQEEQGMYGVFDTDTSTIAI  400 (410)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHHHHTTCSEEEEEESCEEETCCCCCTTCCCCTTSCCCSSCTTSCTTSSCEETTCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHH
T ss_conf             76468999999999999999999828998999995416878888887778779987798985347348998899748899


Q ss_pred             ---------C
Q ss_conf             ---------9
Q 003496          278 ---------V  278 (815)
Q Consensus       278 ---------~  278 (815)
                               +
T Consensus       401 ~~~~~~~~~~  410 (410)
T d1uuqa_         401 MKEFNARFQP  410 (410)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHCCC
T ss_conf             9999974197

>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of family B DNA polymerases
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=0  Score=30961.74  Aligned_cols=1  Identities=0%  Similarity=-0.992  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~ll~~~Y~~~~~~~vi~~~g~~~~~~~v~~~~~gf~PYFyv~~~~~~~~~~~~~~~~~~~~~~e~v~k   80 (410)
T d1s5ja1           1 EWLEEAQENKIYFLLQVDYDGKKGKAVCKLFDKETQKIYALYDNTGHKPYFLVDLEPDKVGKIPKIVRDPSFDHIETVSK   80 (410)
T ss_dssp             CCSCBCCTTCEEEEEEEEEETTTTEEEEEEEETTTTEEEEEECCSCCCCEEEESSCHHHHTTCHHHHTCTTEEEEEEEEE
T ss_pred             CCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             97655456875899986886329989999974269938999968896530899888216899998764236561799997


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~ki~~~~p~~v~~~r~~~~~~~EadI~~~~RfliD~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (410)
T d1s5ja1          81 IDPYTWNKFKLTKIVVRDPLAVRRLRNDVPKAYEAHIKYFNNYMYDIGLIPGMPYVVKNGKLESVYLSLDEKDVEEIKKA  160 (410)
T ss_dssp             ECTTTCCEEEEEEEEESSHHHHHHHTTSSSCEESCSSCHHHHHHHHHTCCTTSEEEEETTEEEECCCCCCHHHHHHHHHH
T ss_pred             EECCCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHCEEEECCCCCCEEEEECCCCCCCCCCCCCCCHHHHHCCC
T ss_conf             71237853069999982899999999874654013668421179994886635899558743334555672011010133


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~lsfDIE~~~~~~~~fP~p~~~~~~ii~I~~~~~~~~~~v~~~~~~~~~~~~~  240 (410)
T d1s5ja1         161 FADSDEMTRQMAVDWLPIFETEIPKIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKVLVLNRNDVNEGSV  240 (410)
T ss_dssp             TTTSCHHHHHHHHHHTHHHHSCCCCCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEEEEEECSSCCCCCCE
T ss_pred             CCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCC
T ss_conf             34443000000011354333689984199999997878889897953367549999998165878999981677766544


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~v~~~~sE~eLL~~F~~~i~dpDii~GyN~~~FD~pyL~~Ra~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  320 (410)
T d1s5ja1         241 KLDGISVERFNTEYELLGRFFDILLEYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKF  320 (410)
T ss_dssp             EETTEEEEEESSHHHHHHHHHHHHTTCSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHH
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCEEEEECCE
T ss_conf             67980999978999999998754316666898435688689999999995996321531104741016855458976062


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~d~~~~~~~~~~l~sy~Ld~Va~~~Lg~~K~d~~~~~~~~~~~~l~~Y~~~D~~L~~~L~~~~~~~~l~~~~~~s~i~  400 (410)
T d1s5ja1         321 FFNKAVRNYAFEGKYNEYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLTTFNNDLTMKLIVLFSRIS  400 (410)
T ss_dssp             HTSHHHHHHTSTTCCSSCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred             EEEHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             62148998752358788987999999869695567776565897999886099999999998652588899999999985


Q ss_pred             ---------C
Q ss_conf             ---------9
Q 003496          278 ---------V  278 (815)
Q Consensus       278 ---------~  278 (815)
                               +
T Consensus       401 ~~plddv~r~  410 (410)
T d1s5ja1         401 RLGIEELTRT  410 (410)
T ss_dssp             CCCHHHHTTS
T ss_pred             CCCHHHCCCC
T ss_conf             9798980479

>d2cmza1 e.76.1.2 (A:1-409) Spike glycoprotein {Vesicular stomatitis indiana virus [TaxId: 11277]}

class: Multi-domain proteins (alpha and beta)
fold: Viral glycoprotein ectodomain-like
superfamily: Viral glycoprotein ectodomain-like
family: Spike glycoprotein-like
domain: Spike glycoprotein
species: Vesicular stomatitis indiana virus [TaxId: 11277]

Probab=100.00  E-value=0  Score=30891.53  Aligned_cols=1  Identities=0%  Similarity=-1.589  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~iv~p~~~~~~W~~v~~~~l~CP~~~~~~~~~~~~~~~~~~~~p~~~t~~kv~G~~Chk~~w~ttC~~~wyg~~~it~   80 (409)
T d2cmza1           1 KFTIVFPHNQKGNWKNVPSNYHYCPSSSDLNWHNDLIGTAIQVKMPKSHKAIQADGWMCHASKWVTTCDFRWYGPKYITQ   80 (409)
T ss_dssp             CEEEEEECSCCCCCEECCTTCCCCGGGGCTTTCCSCEEEEEEEEEECCCSCCEECEEEEEEEEEEEEEEECTTSCEEEEE
T ss_pred             CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEECCEEEEEEEEEEEEEEEEECCEEEEE
T ss_conf             97689168888888237711244999745467786245558998103566336552798655899998746307558999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~i~~~~pt~~~C~~ai~~~~~G~~~~p~fPp~~C~w~tv~t~e~~~i~i~ph~V~lDpY~~~~~D~~F~gGkCs~~~C~T  160 (409)
T d2cmza1          81 SIRSFTPSVEQCKESIEQTKQGTWLNPGFPPQSCGYATVTDAEAVIVQVTPHHVLVDEYTGEWVDSQFINGKCSNYICPT  160 (409)
T ss_dssp             EEEEECCCHHHHHHHHHHHHTTCCCCCCSCCCCCCTTSEEEEEEEEEEEEECCEEEETTTTEEECTTBGGGEECSSEEEB
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEECCCCEEECCCCCCCCCCCCCCCC
T ss_conf             99974499899999998876587258989985515631211037999996455325377882746757999668970677


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~h~~tiWi~d~~~~~~C~~~~~~~~i~~~~~~gk~~s~g~~~~g~~~~~~~~~~~~gACkl~fCG~~GIRl~~GeWv~i~  240 (409)
T d2cmza1         161 VHNSTTWHSDYKVKGLCDSNLISMDITFFSEDGELSSLGKEGTGFRSNYFAYETGGKACKMQYCKHWGVRLPSGVWFEMA  240 (409)
T ss_dssp             SSSSCEEEESSCHHHHHGGGEEEEEEEEEESSCCGGGTTCSSCEEEETTEEEEECTTCEEEEETTEEEEECTTSBEEEES
T ss_pred             CCCCCEECCCCCCCCCCCCCCCCCCEEEECCCCHHCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCEECCCCCEEEEE
T ss_conf             67861661577666501355301211684255600014653038983785545778831254348754687798589986


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~p~C~~~~~v~~~~~~~~~~~~~~~~e~~~~~~~Cl~tl~ki~~~~~iS~~dLSyL~p~~PG~G~AY~i~n  320 (409)
T d2cmza1         241 DKDLFAAARFPECPEGSSISAPSQTSVDVSLIQDVERILDYSLCQETWSKIRAGLPISPVDLSYLAPKNPGTGPAFTIIN  320 (409)
T ss_dssp             CHHHHHHTTCCBCCTTCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHTTSCCSSEEEEEEEEET
T ss_pred             CCCCCEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCEEEEEC
T ss_conf             66641002577799998655036775166778999877879998999999974798775555420567999864379989


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 gtL~~~~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~G~NG~~~~~~~~~~p~~~~~~~~~d~~l~~~~  400 (409)
T d2cmza1         321 GTLKYFETRYIRVDIAAPILSRMVGMISGTTTERELWDDWAPYEDVEIGPNGVLRTSSGYKFPLYMIGHGMLDSDLHLSS  400 (409)
T ss_dssp             TEEEEEEEEEEEEEESSSEESSSEEEETTSCCEEECCCCCEEETTEEECGGGCEEETTEEECCHHHHHHHHHHHHHHHHC
T ss_pred             CEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEECCCEEEEECCEEEECHHHHCCCCHHHHHHHHH
T ss_conf             94897668999998226653332564477774542244646868844466526985994895656711520034444440


Q ss_pred             --------C
Q ss_conf             --------9
Q 003496          278 --------V  278 (815)
Q Consensus       278 --------~  278 (815)
                              -
T Consensus       401 ~~~~~~HPh  409 (409)
T d2cmza1         401 KAQVFEHPH  409 (409)
T ss_dssp             CCEECCCCC
T ss_pred             CCCCCCCCC
T ss_conf             267678999

>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=0  Score=30889.38  Aligned_cols=1  Identities=0%  Similarity=-0.926  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~y~~~~~~~l~~l~pe~ah~~~~~~l~~~~~~~~~~~~~~~L~~~v~Gl~f~NPiglAAG~dk~~~~i~~~   80 (409)
T d1tv5a1           1 FESYNPEFFLYDIFLKFCLKYIDGEICHDLFLLLGKYNILPYDTSNDSIYACTNIKHLDFINPFGVAAGFDKNGVCIDSI   80 (409)
T ss_dssp             CCTTSTTCHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTCSCCCCSCCCGGGCEEETTEEESSSEEECTTTTTTCSSHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCEECCCCCEECCCCCCCHHHHHHH
T ss_conf             98778326789999999852599899999999999735777534677744466788764489687560668788999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~lGfG~ve~gTvT~~p~~GNp~PR~~r~~~~~~liN~~Gl~n~G~~~~~~~l~~~~~~~~~~~~~~~~i~gi~~~~~~~  160 (409)
T d1tv5a1          81 LKLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTENLILFRKRQEEDKLLSKHIVGVSIGKNKD  160 (409)
T ss_dssp             HTTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCSCBSCHHHHHHHHHHHHHHHHHCSTTTTCEEEEEECCCTT
T ss_pred             HHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             86688769951023035647897322345433321024677763589999987777654430566654300231454420


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~aD~~elNiScPNt~glr~~~~~~~L~~ll~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (409)
T d1tv5a1         161 TVNIVDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDESTYNEDNKIVEKKN  240 (409)
T ss_dssp             CSCHHHHHHHHHHHHGGGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHHHC----------------------
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCC
T ss_conf             15788877999998850143100010265433442456889999999999999875301222221111111001111000


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~ppi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlS  320 (409)
T d1tv5a1         241 NFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVS  320 (409)
T ss_dssp             ----------------CCCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEE
T ss_pred             CCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             11222222110000000110123567865998589987024688999988606541011322225555334234677643


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 G~~l~~~al~~v~~v~~~~~~~ipIIGvGGI~s~~Da~e~i~AGAs~VQv~T~li~~Gp~~v~~I~~~L~~~l~~~g~~~  400 (409)
T d1tv5a1         321 GAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYYN  400 (409)
T ss_dssp             EHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTTEEEEEESHHHHHHGGGHHHHHHHHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             10178899999999999708996099989979999999999849978763067871192899999999999999829998


Q ss_pred             --------C
Q ss_conf             --------9
Q 003496          278 --------V  278 (815)
Q Consensus       278 --------~  278 (815)
                              .
T Consensus       401 i~e~iG~~h  409 (409)
T d1tv5a1         401 LKEAIGRKH  409 (409)
T ss_dssp             SGGGTTTTC
T ss_pred             HHHHCCCCC
T ss_conf             999539889

>d1qtma2 e.8.1.1 (A:423-831) DNA polymerase I (Klenow fragment) {Thermus aquaticus [TaxId: 271]}

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: DNA polymerase I
domain: DNA polymerase I (Klenow fragment)
species: Thermus aquaticus [TaxId: 271]

Probab=100.00  E-value=0  Score=30888.71  Aligned_cols=1  Identities=0%  Similarity=-1.556  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~l~~~y~~lE~~l~~vl~~me~~Gi~vD~~~l~~~~~~~~~~~~~l~~~~~~~~g~~fN~~S~~ql~~~L~~~l~l~~   80 (409)
T d1qtma2           1 EERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPA   80 (409)
T ss_dssp             CHHHHHHHHHTHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf             90789999999968999999999729284899999999999999999999999995991899999999999999739997


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~g~~~~~~~~l~~l~~~~~~~~~~~~~~~~~kl~~~~~~~~~~~~~~~~grih~~~~~~gt~TGR~ss~~pnlq  160 (409)
T d1qtma2          81 IGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQ  160 (409)
T ss_dssp             CCBCTTTCCBCCCHHHHHHTTTTCTHHHHHHHHHHHHHHHHHTTTTGGGGBCTTTSEECCEEESSCCSSSCCEEESSCCS
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCHHH
T ss_conf             66656678755323368887421168999999889988888878778775038899163144556666665466650120


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~p~~~~~~~~~R~~f~a~~G~~lv~aD~sqiElRvlA~ls~D~~l~~~~~~g~D~~~~~a~~~~~~~~~~v~~~~R~~a  240 (409)
T d1qtma2         161 NIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAA  240 (409)
T ss_dssp             SCCCSSHHHHHHHTTEECCTTEEEEEEEETTHHHHHHHHHHCCHHHHHHHHTTCCHHHHHHHHHHTCCGGGCCHHHHHHH
T ss_pred             CCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCEECCCCCCHHHHHHHHCCCCCEEECHHHHHHH
T ss_conf             25410014454100555789968998530236324688860674411110157620101012212764223140676667


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 K~~~fg~~YG~g~~~l~~~~~~~~~ea~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~v~t~~Gr~~~~~~~~~~~~~~~~  320 (409)
T d1qtma2         241 KTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVRE  320 (409)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHSEEECTTCCEEECGGGGCSCHHHHH
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf             76410123576334566665442778999999998864235677788999887627233235653332100001254432


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~~~N~~iQg~aAdi~k~a~~~~~~~l~~~~~~iv~~VHDEiv~ev~~~~a~~~~~~i~~~M~~~~~l~vPl~~e~~  400 (409)
T d1qtma2         321 AAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVG  400 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSEEEEEEETTTHHHHHHHHHHHHHTSSCCSSCCCEEEE
T ss_pred             HHHHHCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf             20200121320399999999999999999886699899974413499987789999999999998603268997786621


Q ss_pred             --------C
Q ss_conf             --------9
Q 003496          278 --------V  278 (815)
Q Consensus       278 --------~  278 (815)
                              .
T Consensus       401 ig~~W~e~k  409 (409)
T d1qtma2         401 IGEDWLSAK  409 (409)
T ss_dssp             EESBHHHHC
T ss_pred             ECCCHHHCC
T ss_conf             558967749

>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: LanC-like
family: LanC-like
domain: Nisin biosynthesis protein NisC
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=0  Score=30886.59  Aligned_cols=1  Identities=0%  Similarity=-2.021  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sLy~G~~GiaL~l~~l~~~t~~~~~~~~a~~~l~~~~~~~~~~~~~~~g   80 (409)
T d2g0da1           1 KKNIKRNVEKIIAQWDERTRKNKENFDFGELTLSTGLPGIILMLAELKNKDNSKIYQKKIDNYIEYIVSKLSTYGLLTGS   80 (409)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHC-----CGGGGSTTTSHHHHHHHHHTTTTSTTHHHHHHHHHHHHHHHHHHHHHHCCSCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             95188999999985566530365569989983238779999999999886498789999999999999998607998863


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 lf~G~~Gi~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~D~l~G~aG~~~~LL~~~~~~~~~~~~  160 (409)
T d2g0da1          81 LYSGAAGIALSILHLREDDEKYKNLLDSLNRYIEYFVREKIEGFNLENITPPDYDVIEGLSGILSYLLLINDEQYDDLKI  160 (409)
T ss_dssp             TTTSHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCHHHHSSSSSHHHHHHHHTTCCCGGGHHHHH
T ss_pred             EECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHHCCCCCCHHHH
T ss_conf             00787999999999986050356899999999999999999874402367766212226188999999833222407899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~sGi~~~L~~~~~~~~~~~~~~~~~~~~~~~l~  240 (409)
T d2g0da1         161 LIINFLSNLTKENNGLISLYIKSENQMSQSESEMYPLGCLNMGLAHGLAGVGCILAYAHIKGYSNEASLSALQKIIFIYE  240 (409)
T ss_dssp             HHHHHHHHTTSCCSSSCTTCBCGGGSSSHHHHHHCTTCBEECCTTTSHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             99999999997413554333454445552200036778776426550799999999998843788218999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~la~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  320 (409)
T d2g0da1         241 KFELERKKQFLWKDGLVADELKKEKVIREASFIRDAWCYGGPGISLLYLYGGLALDNDYFVDKAEKILESAMQRKLGIDS  320 (409)
T ss_dssp             HHCCCGGGTTCCCSEECHHHHHHTSCCSCCSCCCCCSSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCTTCCS
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             98642335688987676531123334456766655437884679999999998719889999999999999983548998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~LCHG~aG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGi~~~Ll~~~~~~~~~~W~~~~L  400 (409)
T d2g0da1         321 YMICHGYSGLIEICSLFKRLLNTKKFDSYMEEFNVNSEQILEEYGDESGTGFLEGISGCILVLSKFEYSINFTYWRQALL  400 (409)
T ss_dssp             CCTTTSHHHHHHHHHHHHHHHCCCTTHHHHHHHHHTHHHHHHSCCSTTCSSTTTSHHHHHHHHHHHHSCCCSSCGGGGGT
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHCCCCCCCCCCHHHC
T ss_conf             93568689999999999988488799999999999888743467899997244169999999998268999987112110


Q ss_pred             --------C
Q ss_conf             --------9
Q 003496          278 --------V  278 (815)
Q Consensus       278 --------~  278 (815)
                              .
T Consensus       401 ~~~~~~~~~  409 (409)
T d2g0da1         401 LFDDFLKGG  409 (409)
T ss_dssp             CCTTTTTCC
T ss_pred             CCCCCCCCC
T ss_conf             456234488

>d1b25a1 a.110.1.1 (A:211-619) Formaldehyde ferredoxin oxidoreductase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: Aldehyde ferredoxin oxidoreductase, C-terminal domains
superfamily: Aldehyde ferredoxin oxidoreductase, C-terminal domains
family: Aldehyde ferredoxin oxidoreductase, C-terminal domains
domain: Formaldehyde ferredoxin oxidoreductase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=0  Score=30885.60  Aligned_cols=1  Identities=0%  Similarity=-1.690  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 D~e~~~~~~~~~~~~i~~~~~~~~~~~~GT~~~~~~~~~~g~lP~rNf~~g~~~~a~~isge~~~~~~~~~~~C~~Cpi~   80 (409)
T d1b25a1           1 DKEELKKLSQEAYNEILNSPGYPFWKRQGTMAAVEWCNTNYALPTRNFSDGYFEFARSIDGYTMEGMKVQQRGCPYCNMP   80 (409)
T ss_dssp             CHHHHHHHHHHHHHHHHHSTTHHHHHHHGGGGHHHHHHHTTCSCBTTTTBSCCTTGGGGSHHHHHHHEEEEECCTTCSSC
T ss_pred             CHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCC
T ss_conf             98999999999999987194176788368599999998759968177878878873445899998775127888999678


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 C~~~~~~~~g~~~gpEYEt~~~~Gs~~gi~D~~~v~~~n~lcd~~GlDtIs~G~~ia~amE~~e~Gll~~~~~~Gd~e~~  160 (409)
T d1b25a1          81 CGNVVLDAEGQESELDYENVALLGSNLGIGKLNEVSVLNRIADEMGMDTISLGVSIAHVMEAVERGILKEGPTFGDFKGA  160 (409)
T ss_dssp             CEEEEECTTSCEEEECHHHHHHHTGGGTCCCHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHTTSSSSSCCTTCHHHH
T ss_pred             CCCEEECCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf             88358728987078536479887660289999999999999998687456450599999999977999866667886999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~ll~~Ia~r~GeiG~~La~G~~~aae~~G~~~~a~~vKG~e~p~~dpR~~~g~~l~yats~rGa~H~~~~~~~~~~~~~  240 (409)
T d1b25a1         161 KQLALDIAYRKGELGNLAAEGVKAMAEKLGTHDFAMHVKGLEVSGYNCYIYPAMALAYGTSAIGAHHKEAWVIAWEIGTA  240 (409)
T ss_dssp             HHHHHHHHTTCHHHHHHHTTCHHHHHHHHTCGGGCCEETTEECCSCCCTTCHHHHHHHHHCTTSSCSTTCCCHHHHHTCC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHCCC
T ss_conf             99999998667857899973399999994982321020777666527763024666551246787045533220331357


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dslg~C~F~~~~~~~~~e~~~~~l~avTG~~~t~eel~~~GeRi~  320 (409)
T d1b25a1         241 PIEGEKAEKVEYKISYDPIKAQKVVELQRLRGGLFEMLTACRLPWVEVGLSLDYYPKLLKAITGVTYTWDDLYKAADRVY  320 (409)
T ss_dssp             TTC--------CCCCCCTHHHHHHHHHHHHHTTHHHHHTCCSHHHHHHCCCTTHHHHHHHHHHSCCCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             41110123312345678078999999999999999860404552214577899999999984388999999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~L~R~fN~r~G~~~~~~~dD~lP~r~~~ep~~~Gp~~G~~~d~~~~e~~l~~YY~~rGWde~G~Pt~e~L~~LgL~~v~~  400 (409)
T d1b25a1         321 SLIRAYWVREFNGKWDRKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDELLSEYYRIRGWDERGIPKKETLKELDLDFVIP  400 (409)
T ss_dssp             HHHHHHHHHHTTTCCCGGGGCCCTHHHHCCCSSSTTTTCCCCHHHHHHHHHHHHHHHTBCTTSCBCHHHHHHTTCTTHHH
T ss_pred             HHHHHHHHHCCCCCCCHHHCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHHHH
T ss_conf             99999998606679983427797154118887787578868999999999999997399988846999999879966899


Q ss_pred             --------C
Q ss_conf             --------9
Q 003496          278 --------V  278 (815)
Q Consensus       278 --------~  278 (815)
                              .
T Consensus       401 ~l~~~~~~~  409 (409)
T d1b25a1         401 ELEKVTNLE  409 (409)
T ss_dssp             HHHTTSCCC
T ss_pred             HHHHHHCCC
T ss_conf             999986169

>d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini [TaxId: 2094]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Arginine deiminase
domain: Arginine deiminase
species: Mycoplasma arginini [TaxId: 2094]

Probab=100.00  E-value=0  Score=30884.86  Aligned_cols=1  Identities=0%  Similarity=-0.825  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~v~SE~g~Lk~V~vhrPg~e~~~l~P~~~~~~lfd~~~~~~~a~~Ehd~f~~~L~~~Gv~V~~l~~ll~e   80 (409)
T d1s9ra_           1 SVFDSKFKGIHVYSEIGELESVLVHEPGREIDYITPARLDELLFSAILESHDARKEHKQFVAELKANDINVVELIDLVAE   80 (409)
T ss_dssp             CCSCTTCCSCBBCCSSSCEEEEEECCCCGGGGGCCGGGHHHHTCSSCCCHHHHHHHHHHHHHHHHTTTCEEEEHHHHHHH
T ss_pred             CCCCCCCCCCEEECCCCCCCEEEECCCCHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHH
T ss_conf             93113778641577700131799769848987269311577514777799999999999999999789889983786876


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~g~~~~e~~~~~~~~~~~~plpn~~F~RD  160 (409)
T d1s9ra_          81 TYDLASQEAKDKLIEEFLEDSEPVLSEEHKVVVRNFLKAKKTSRELVEIMMAGITKYDLGIEADHELIVDPMPNLYFTRD  160 (409)
T ss_dssp             HHHHSCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHTCSSHHHHHHHHHHCEEHHHHTCCCSSSEEECCCGGGGCTTS
T ss_pred             HHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCHHCCC
T ss_conf             55407999999999863101134454768888999986048889999988524515442555676334678755200057


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~gvil~~m~~~~R~~E~~~~~~i~~~~~~~~~~~~~~~~~~~~~~EGGD~l~~g~~~~~iG~s~RTn~~gie~L  240 (409)
T d1s9ra_         161 PFASVGNGVTIHYMRYKVRQRETLFSRFVFSNHPKLINTPWYYDPSLKLSIEGGDVFIYNNDTLVVGVSERTDLQTVTLL  240 (409)
T ss_dssp             SEEEEBTEEEECCCSSHHHHTTHHHHHHHHHHCTTTTTCCEEECGGGCSCCCGGGEEECSSSEEEEEESSSCCHHHHHHH
T ss_pred             CEEEECCCEEECCCCCHHHCCCHHHHHHHHHHCHHHCCCCEEEECCCCCCCCCCCEEEECCCEEEEEECCCCCHHHHHHH
T ss_conf             43687486897899984665477999999984844349855972687664556747998996799997876798999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~L~~~~~~~~~~v~~~~~p~~~~~mHLDt~f~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  320 (409)
T d1s9ra_         241 AKNIVANKECEFKRIVAINVPKWTNLMHLDTWLTMLDKDKFLYSPIANDVFKFWDYDLVNGGAEPQPVENGLPLEGLLQS  320 (409)
T ss_dssp             HHHHHHCTTCCCCEEEEEECCCBTTBCSGGGTEEECSSSEEEECGGGTTTCEEEEEETTTSCSSCCCEEECCCHHHHHHH
T ss_pred             HHHHHHCCCCEEEEEEEECCCCCCCCEEECCCEEECCCCEEEECCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             99863447712689875047886552233560243279849982543564220012203676654101210338999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~~~~i~~~~~~~~~~~~~~E~~~~~~N~L~l~p~~Vi~~~~~~~~~~~L~~~Gievi~i~~~el~~~gGg~hCmT~  400 (409)
T d1s9ra_         321 IINKKPVLIPIAGEGASQMEIERETHFDGTNYLAIRPGVVIGYSRNEKTNAALEAAGIKVLPFHGNQLSLGMGNARCMSM  400 (409)
T ss_dssp             HHSSCCEEEETTCTTCCHHHHHHHHHTTTTCCEEEETTEEEEETTCHHHHHHHHHTTCEEEEECCHHHHTTSCCTTTTCE
T ss_pred             HHCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCEEEEECCCHHHHHHHHHCCCEEEEECHHHHHCCCCCCEECCC
T ss_conf             74799808984688764566655540574049997799899858869999999978899999673785327998777870


Q ss_pred             --------C
Q ss_conf             --------9
Q 003496          278 --------V  278 (815)
Q Consensus       278 --------~  278 (815)
                              .
T Consensus       401 pl~Re~v~~  409 (409)
T d1s9ra_         401 PLSRKDVKW  409 (409)
T ss_dssp             EEEECCCCC
T ss_pred             CCEECCCCC
T ss_conf             345279899

>d1dkla_ c.60.1.2 (A:) Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate mutase-like
superfamily: Phosphoglycerate mutase-like
family: Histidine acid phosphatase
domain: Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=30881.61  Aligned_cols=1  Identities=0%  Similarity=0.636  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~p~~~L~~V~il~RHG~R~P~~~~~~~~~~~~~~~~~~~~~~G~LT~~G~~q~~~lG~~lr~~Y~~~~~~~~~~~~~~~   80 (409)
T d1dkla_           1 SEPELKLESVVIVSRHGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQSG   80 (409)
T ss_dssp             CCSCEEEEEEEEEEECCCBCCCCCCHHHHHTCSSCCCCCSSCTTSBCHHHHHHHHHHHHHHHHHHHHTTSSCSSSCCCTT
T ss_pred             CCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             99888898999997188899999866557688433557999930526999999999999999998774367887778712


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~i~vrSt~~~Rt~~SA~afl~Gl~p~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (409)
T d1dkla_          81 QVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQT  160 (409)
T ss_dssp             TEEEEECSSHHHHHHHHHHHHHHSTTCCCCEECCSCTTSCCGGGCTTTTTSSCCCHHHHHHHHHHHTTSSHHHHHHTTHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             06987279729999999999852788676655445556667566777577667536777789987745647778899889


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~  240 (409)
T d1dkla_         161 AFRELERVLNFPQSNLCLKREKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSH  240 (409)
T ss_dssp             HHHHHHHHHTGGGSHHHHTC-----CCCHHHHSCCCEEEETTEEEECHHHHHHHHHHHHHHHHHHHTCSSGGGGTCCSHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHH
T ss_conf             99999999721121037877510037889999899988640477767726667659999999998599972110357799


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~k~~l~s~HD~ti~~ll~aLgl~~~~~  320 (409)
T d1dkla_         241 QWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLFIAGHDTNLANLGGALELNWTLP  320 (409)
T ss_dssp             HHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHSCCCCEECGGGCEESCSEEEEEECHHHHHHHHHHHTCCCCBT
T ss_pred             HHHHHHHHHHHHHEECCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCC
T ss_conf             99999999998650005887899873668999999999876404555678888638999568414999999819853456


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~~p~as~~~~El~~~~~~~~~~vrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gC~~~~~~~~C~l~~F~~~~~  400 (409)
T d1dkla_         321 GQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQMRDKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVN  400 (409)
T ss_dssp             TBSCSSCTTCEEEEEEEEETTTTEEEEEEEEEECCHHHHHTTCCCCSSSCCEEEECCCTTCCCBCTTSCEEHHHHHHHHH
T ss_pred             CCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             66899997663899999846999725999995376201245665201025775046479998889999368999999999


Q ss_pred             --------C
Q ss_conf             --------9
Q 003496          278 --------V  278 (815)
Q Consensus       278 --------~  278 (815)
                              -
T Consensus       401 ~~~~p~c~~  409 (409)
T d1dkla_         401 EARIPACSL  409 (409)
T ss_dssp             HHSCGGGCC
T ss_pred             HHHHHHCCC
T ss_conf             775021279

>d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Halothermothrix orenii [TaxId: 31909]

Probab=100.00  E-value=0  Score=30882.82  Aligned_cols=1  Identities=0%  Similarity=-0.261  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~k~~v~Y~~~~~~f~d~~~~~~Gd~~g~~~kLdyl~~~~~~~i~~LGv~~i~l~Pi~~~~~~~GY~~~d~~~vd~~~G~   80 (409)
T d1wzaa2           1 FEKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKSPSYHGYDVTDYYKINPDYGT   80 (409)
T ss_dssp             CCCCCCEEEECGGGSCCSSSSSCCCHHHHHHTHHHHCCSCTTCCSSCCCSEEEECCCEECSSSSCCSCSEEEEECGGGCC
T ss_pred             CCCCCEEEEEECCHHCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             98761799996412137999987489999975533210022277616866799798887989888684567875834599


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~dlk~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (409)
T d1wzaa2          81 LEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSPTGMYYGY  160 (409)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECCCSBCCTTSHHHHHHHTCTTCTTGGGBCBCCSCCCCCBCSSSCBCSEEEETTEEEECS
T ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999999999866988998213344445673123331146553345322356444567654579853322346664466


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~dln~~n~~vr~~~~~~~~~wi~~gVDGfR~D~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~  240 (409)
T d1wzaa2         161 FWSGMPDLNYNNPEVQEKVIGIAKYWLKQGVDGFRLDGAMHIFPPAQYDKNFTWWEKFRQEIEEVKPVYLVGEVWDISET  240 (409)
T ss_dssp             SCTTSCBBCTTSHHHHHHHHHHHHHHHHTTCCEEEEECCCTTSCGGGTTHHHHHHHHHHHHHTTTSCCEEEEECCSCHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCHHHCCCCHHCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
T ss_conf             77887620325689999999999999982987212253532166032020068999999740037880799986037521


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nhD~~r~~~~~~~~~~~~~~  320 (409)
T d1wzaa2         241 VAPYFKYGFDSTFNFKLAEAVIATAKAGFPFGFNKKAKHIYGVYDREVGFGNYIDAPFLTNHDQNRILDQLGQDRNKARV  320 (409)
T ss_dssp             HGGGGTTTCSEEBCHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHTCTTSCCCBCBSCCTTSCCHHHHTTTCHHHHHH
T ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             13444202232012468999988774167521678877777766543002456556312455567310002786678999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~lt~pG~P~iy~G~E~G~~~~~~~~~~R~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~Li~l  400 (409)
T d1wzaa2         321 AASIYLTLPGNPFIYYGEEIGMRGQGPHEVIREPFQWYNGSGEGETYWEPAMYNDGFTSVEQEEKNLDSLLNHYRRLIHF  400 (409)
T ss_dssp             HHHHHTTSSSCCEEETTGGGTCCCCSSHHHHTCCCCCSSSCCTTCCCSSCCTTTTTTCCHHHHTTCTTSHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHH
T ss_conf             99999838998799558653766899986546788777788888776775555655468998863748999999999999


Q ss_pred             --------C
Q ss_conf             --------9
Q 003496          278 --------V  278 (815)
Q Consensus       278 --------~  278 (815)
                              +
T Consensus       401 Rk~~pal~s  409 (409)
T d1wzaa2         401 RNENPVFYT  409 (409)
T ss_dssp             HHHCTHHHH
T ss_pred             HHHCCHHCC
T ss_conf             960813039

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Azospirillum irakense [TaxId: 34011]

Probab=100.00  E-value=0  Score=30813.57  Aligned_cols=1  Identities=0%  Similarity=-0.161  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~a~~~t~ar~~~~p~~~~aAw~~y~a~s~~~~~a~~~~~~a~~~~g~~~p~~p~~~~~~~~~~l~~~~~wy~s   80 (408)
T d1r76a_           1 AVIGMNEAASALTPSRVSSLPDTQRAAWQEYLARSEAQLSRDKASLAAELAPGQPLPPPPAEGKGADTMPLDKPAAWYTS   80 (408)
T ss_dssp             CCCEECCCCCCCCHHHHSSCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCCCCCCSCCGGGSCSSSCGGGGGS
T ss_pred             CCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf             95554541011687776369878888986436665556766776666653248878999986643033671467444577


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~eA~~iAd~lL~~Q~p~GGWpKn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiDN~aTt~el~~La~  160 (408)
T d1r76a_          81 KAARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQ  160 (408)
T ss_dssp             HHHHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf             79999999999853447998776653200110102232210134455300144555542246788686248999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~y~~a~~~~~~~ll~~Q~~~Ggwpqf~p~~~~Y~~~ItfND~~m~~~l~~l~~~~~~~~~~~~~~~~~r  240 (408)
T d1r76a_         161 VVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIR  240 (408)
T ss_dssp             HHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHH
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf             99973763214699999999999997317799964437887552343112755899799999999973465344787889


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~r~~~a~~rgi~~ll~~Q~~~gg~~~~Wg~Qhd~~tl~P~~aR~yE~~sls~~eS~~i~~~LM~~~~ps~~~~~aI~~av  320 (408)
T d1r76a_         241 TRALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGV  320 (408)
T ss_dssp             HHHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             99999999999999987610488867486525835567344336677264003189999999717777755999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~lwaRfyel~tn~P~f~~Rd~~~~~~~~ei~~err~gy~w~~~~~~~~~~~  400 (408)
T d1r76a_         321 AWLNTSVIRDRAWVKSDQGYQLVTEQGAKPLWSRFYSLDGNKPVFGDRDKTIHDDVMGISQERRTGYAWYTTSPQKALSA  400 (408)
T ss_dssp             HHHHHSCCCC---------------CCSSCCEESEECSSSCCBCEECTTSEEESCGGGSCHHHHSSSCCEESTTHHHHHH
T ss_pred             HHHHHCCCCCCEEEECCCCCEEEECCCCCCCCEEEEECCCCCEEEECCCCCEECCHHHCCHHHCCCCCCCCCCHHHHHHH
T ss_conf             99986646785355348884242089998533256775899624657998653477662097628702427776999998


Q ss_pred             -------C
Q ss_conf             -------9
Q 003496          278 -------V  278 (815)
Q Consensus       278 -------~  278 (815)
                             .
T Consensus       401 y~~w~~~~  408 (408)
T d1r76a_         401 FTKWEKRS  408 (408)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHHCC
T ss_conf             89987449

>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=0  Score=30813.70  Aligned_cols=1  Identities=0%  Similarity=-0.759  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A~l~~~~~rp~LvVt~~~~~A~~l~~dL~~~l~~~   80 (408)
T d1c4oa1           1 TFRYRGPSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRELFPEN   80 (408)
T ss_dssp             CCCCCSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHHHCTTS
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf             96214899998779999999999866997379856888789999999999859999999189999999999999864766


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~v~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVv~~~a~l~~l~~~~~~~~~~~~l~~G  160 (408)
T d1c4oa1          81 AVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLTRRDVIVVASVSAIYGLGDPREYRARNLVVERG  160 (408)
T ss_dssp             EEEECCCGGGTSCCCEEEGGGTEEECCCCSCCHHHHHHHHHHHHHHHHCSCEEEEEEGGGCSCCCCHHHHHHCCBC----
T ss_pred             CEEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCHHHHHCEEEEECC
T ss_conf             45567753422575456845554444421034677764446555320467659995112321678818876114885179


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~l~~~L~~~gY~r~~~V~~~GefsvRG~IlDIfp~~~~~P~RIeffgDeIdsIr~Fd~~tQrs~~~~~~~~i~P  240 (408)
T d1c4oa1         161 KPYPREVLLERLLELGYQRNDIDLSPGRFRAKGEVLEIFPAYETEPIRVELFGDEVERISQVHPVTGERLRELPGFVLFP  240 (408)
T ss_dssp             --------------------------------------------------------------------------CCCBCC
T ss_pred             CEEEHHHHHHHHHHHHCEECCEEECCCEEEEECCCEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEEEC
T ss_conf             89508999999997522214305336605730671276002457637899946733268997278896567655456522


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 a~e~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~Gie~yl~~f~~~~~~e~~~tL~  320 (408)
T d1c4oa1         241 ATHYLSPEGLEEILKEIEKELWERVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYARYFTGKAPGEPPYTLL  320 (408)
T ss_dssp             SCSCCCCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCCTTGGGGHHHHHTCCTTSCCCCGG
T ss_pred             CCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHH
T ss_conf             41110135578888876566899999998737416777799999988877875188765777799865778899852466


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 DYlp~~~lv~~De~~~~~~~~~~~~~e~~e~~~~lle~g~~lP~~~d~~~L~~ee~~~~~~q~i~~S~~p~~~e~~~~~~  400 (408)
T d1c4oa1         321 DYFPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFELAHSGR  400 (408)
T ss_dssp             GGSCTTCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEEESSCCHHHHHHCSE
T ss_pred             HHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCHHHCCCCC
T ss_conf             51687508999582877999999998899999868757867885434798899999985598899808998422306885


Q ss_pred             -------C
Q ss_conf             -------9
Q 003496          278 -------V  278 (815)
Q Consensus       278 -------~  278 (815)
                             +
T Consensus       401 ive~~~Rp  408 (408)
T d1c4oa1         401 VVEQIIRP  408 (408)
T ss_dssp             EEEECSCT
T ss_pred             EEEEEECC
T ss_conf             47996088

>d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=0  Score=30812.71  Aligned_cols=1  Identities=0%  Similarity=-1.358  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 em~~ifs~~~~~~~~l~ve~A~a~a~~e~G~ip~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~a~~~~L~e~~g~~~~~v   80 (408)
T d1f1oa_           1 EMSAIWTDENRFQAWLEVEILACEAWAELGVIPKEDVKVMRENASFDINRILEIEKDTRHDVVAFTRAVSESLGEERKWV   80 (408)
T ss_pred             CHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf             94787790799999999999999999877999999999999847677999998874538858999999998738646341


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 H~G~SsnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~~rL  160 (408)
T d1f1oa_          81 HYGLTSTDVVDTALSYLLKQANDILLKDLERFVDIIKEKAKEHKYTVMMGRTHGVHAEPTTFGLKLALWHEEMKRNLERF  160 (408)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             67887899998999999998488888899999999999999828860146675177777408899999999999879999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~lGGA~Gt~~~~~~~~~~~~~~~lg~~~~~~~~~~~~rd~~~e~~~~l~~la~~l~kia~Dl~~~~s~~~  240 (408)
T d1f1oa_         161 KQAKAGIEVGKISGAVGTYANIDPFVEQYVCEKLGLKAAPISTQTLQRDRHADYMATLALIATSIEKFAVEIRGLQKSET  240 (408)
T ss_pred             HHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99987650124460431346788558999999846767872278887788999987999999999987789998871344


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~e~~~~~~~GSSiMP~K~NP~~~E~v~~~~~~~~g~~~~~~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~  320 (408)
T d1f1oa_         241 REVEEFFAKGQKGSSAMPHKRNPIGSENMTGMARVIRGYMMTAYENVPLWHERDISHSSAERIILPDATIALNYMLNRFS  320 (408)
T ss_pred             CEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             61440366789875200035564079999987601111378998726431200304567776214009999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~l~~l~vn~e~m~~nl~~~~~~~~a~~~~~~Lv~~gl~~~~Ah~~v~~~~~~a~~~~~~l~e~l~~~~~i~~~Ls~eel  400 (408)
T d1f1oa_         321 NIVKNLTVFPENMKRNMDRTLGLIYSQRVLLALIDTGLTREEAYDTVQPKAMEAWEKQVPFRELVEAEEKITSRLSPEKI  400 (408)
T ss_pred             HHHHCCEECHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHCCCCHHHH
T ss_conf             87637865799999999730472689999999998299989999999999999999798899998706786668999999


Q ss_pred             -------C
Q ss_conf             -------9
Q 003496          278 -------V  278 (815)
Q Consensus       278 -------~  278 (815)
                             .
T Consensus       401 ~~~lDp~~  408 (408)
T d1f1oa_         401 ADCFDYNY  408 (408)
T ss_pred             HHHCCCCC
T ss_conf             98659998

>d2hhva2 e.8.1.1 (A:469-876) DNA polymerase I (Klenow fragment) {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]}

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: DNA polymerase I
domain: DNA polymerase I (Klenow fragment)
species: Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]

Probab=100.00  E-value=0  Score=30811.49  Aligned_cols=1  Identities=0%  Similarity=-1.556  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~e~ll~~lE~~l~~vLa~ME~~Gi~vD~e~l~~~~~~l~~~~~~le~~i~~~~G~~fN~~S~~ql~~~Lf~~L~l~~~~   80 (408)
T d2hhva2           1 EQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLK   80 (408)
T ss_dssp             TCHHHHHTTHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCCCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf             97689999988899999999984969789999999999999999999999999699679999999999999855999987


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~r~~~k~~~~~~~~~~~~~~~~~gRih~~~~~~gt~TGR~s~~~Pnlqn~p~  160 (408)
T d2hhva2          81 KTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPI  160 (408)
T ss_dssp             BCSSSBCCCHHHHHHHGGGCHHHHHHHHHHHHHHHHHTTTHHHHHHSCTTTCEECCEEESSCCSSSCCEEESSCTTCCCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCEECCEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             58788655335677750112579999999999888886533324305089985787200357654445557632146777


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~r~~~~~~~g~~lv~~DysqiElRvlA~ls~D~~l~~~~~~g~D~h~~~a~~~~~~~~~~~~~~~R~~aK~~  240 (408)
T d2hhva2         161 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAV  240 (408)
T ss_dssp             SSHHHHGGGGGEECSSTTEEEEEEEESSHHHHHHHHHHTCHHHHHHHHTTCCHHHHHHHHHHTCCGGGCCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHEEECCCCEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHH
T ss_conf             64335023312113047845887220215199999994888899987744215665455404777888070677889987


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~fg~~YG~g~~~l~~~~~~~~~ea~~~~~~~~~~~p~i~~~~~~~~~~a~~~g~~~~~~grrr~~p~~~~~~~~~r~~~~  320 (408)
T d2hhva2         241 NFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAE  320 (408)
T ss_dssp             HHHHHHCCCHHHHHHHHTCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSEEECTTCCEEECGGGGCSSHHHHHHHH
T ss_pred             HHCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHH
T ss_conf             61533245115546101222788999999998640116255789999999828875467984158865566676767888


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 r~a~N~~iQgsaAdi~k~a~~~~~~~l~~~~~~~~lv~~VHDEiv~ev~~~~~~~~~~~~~~~M~~~~~l~vPl~~d~~i  400 (408)
T d2hhva2         321 RMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHY  400 (408)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEECSSEEEEEEEGGGHHHHHHHHHHHHHTSSCCSSCCCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf             87760011489999999999999999984489978999763105899778999999999999995476788807865044


Q ss_pred             -------C
Q ss_conf             -------9
Q 003496          278 -------V  278 (815)
Q Consensus       278 -------~  278 (815)
                             .
T Consensus       401 G~~W~e~k  408 (408)
T d2hhva2         401 GSTWYDAK  408 (408)
T ss_dssp             ESSTTTCC
T ss_pred             CCCHHHCC
T ss_conf             78967759

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=30809.86  Aligned_cols=1  Identities=0%  Similarity=-1.125  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~   80 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN   80 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
T ss_conf             98699999884899999999787899988999988999999868899999999885998877999899999999869977


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~  160 (408)
T d1n11a_          81 MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA  160 (408)
T ss_dssp             HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf             99999874100123211122024555430332222222211001001456464289999875989999999976998886


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~  240 (408)
T d1n11a_         161 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQ  240 (408)
T ss_dssp             CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf             78767409999998599999999986588400457789971024320210455555432001221247789999999998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g  320 (408)
T d1n11a_         241 EGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ  320 (408)
T ss_dssp             TTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT
T ss_pred             HCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEECCCC
T ss_conf             08676754420022111112478997334543028489999999779965621023445302210058621355301333


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~  400 (408)
T d1n11a_         321 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRM  400 (408)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCCSSCC----CCC
T ss_pred             CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             32234689999999999986889999999987889988799998999999983999999999998736564560003668


Q ss_pred             -------C
Q ss_conf             -------9
Q 003496          278 -------V  278 (815)
Q Consensus       278 -------~  278 (815)
                             .
T Consensus       401 ~~~~~~~~  408 (408)
T d1n11a_         401 SFPETVDE  408 (408)
T ss_dssp             CCCCCCCC
T ss_pred             CCCHHCCC
T ss_conf             76410149

>d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Exo-beta-(1,3)-glucanase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=30808.11  Aligned_cols=1  Identities=0%  Similarity=-0.892  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~rGvNlGgWlv~E~wi~p~~f~~~~~~~~~~~~~~~de~~~~~~~G~~~~~~~~~~h~~~~ite~D~~   80 (408)
T d1h4pa_           1 YYDYDHGSLGEPIRGVNIGGWLLLEPYITPSLFEAFRTNDDNDEGIPVDEYHFCQYLGKDLAKSRLQSHWSTFYQEQDFA   80 (408)
T ss_dssp             CCCTTSCTTSSCEEEEECTTSSSCCTTTSHHHHHTTCCCTTCCTTCCSSHHHHHHHHCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCCCCCCCCCCEEEEEECCHHHCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             96666787798325886515540466667315554256666555542209999998687889999999885328899999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~i~~~G~N~VRiPi~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gl~VilDlH~~pG~~~~~~~~~~~~~~~~~~~~~  160 (408)
T d1h4pa_          81 NIASQGFNLVRIPIGYWAFQILDDDPYVSGLQESYLDQAIGWARNNSLKVWVDLHGAAGSQNGFDNSGLRDSYKFLEDSN  160 (408)
T ss_dssp             HHHHTTCCEEEEEEEGGGTCCCTTCCCCCSSHHHHHHHHHHHHHHTTCEEEEEEEECTTCSSCCGGGSSTTCCCTTSHHH
T ss_pred             HHHHCCCCEEEEECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf             99977998799854499934778887758158999999999999889989998378998776778877656645578168


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~ia~r~~~~~~~~~v~g~el~NEP~~~~~~~~~~~~~~~~~~~~~iR~~~~~~~~iv~~d~~~~~~~w~~~  240 (408)
T d1h4pa_         161 LAVTINVLNYILKKYSAEEYLDIVIGIELINEPLGPVLDMDKMKNDYLAPAYEYLRNNIKSDQVIIIHDAFQPYNYWDDF  240 (408)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHTTEEEEESCSCCCGGGSCHHHHHHHTHHHHHHHHHHTTCCCCCEEEECTTCCTTGGGGS
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHH
T ss_conf             99999999999999631345664234412567665666557789999999999998634668569980687770145554


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~vv~D~H~Y~~f~~~~~~~s~~~~i~~~~~~~~~~~~~~~p~~vGEws~a~td~~~~~n~~g~~~~~~ge~~  320 (408)
T d1h4pa_         241 MTENDGYWGVTIDHHHYQVFASDQLERSIDEHIKVACEWGTGVLNESHWIVCGEFAAALTDCIKWLNSVGFGARYDGSWV  320 (408)
T ss_dssp             SCGGGTCCSEEEEEEECSCSSHHHHTCCHHHHHHHHHHHHHHHTTCSSEEEEEEECSCSSSCSTTTTCTTCCCTTBTCCC
T ss_pred             CCCCCCCCEEEEECCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEECCCC
T ss_conf             26677786367610223541377556775543311433344543156885243112331104441256554430104413


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~~~~~g~c~~~~~~~~~~~~~~~~~r~~~eaQ~~~ye~~~GW~fWt~K~e~~~~W~~~~~~~~g~iP~~~~~~~~~  400 (408)
T d1h4pa_         321 NGDQTSSYIGSCANNDDIAYWSDERKENTRRYVEAQLDAFEMRGGWIIWCYKTESSLEWDAQRLMFNGLFPQPLTDRKYP  400 (408)
T ss_dssp             BTTBCCCBCSCCTTTTCGGGCCHHHHHHHHHHHHHHHHHHTTTTEEEESCSCCSSCSTTCHHHHHHTTSSCSSTTCCSST
T ss_pred             CCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCC
T ss_conf             67767655565446677001778899999999999999984589777852137999878889999787808896124687


Q ss_pred             -------C
Q ss_conf             -------9
Q 003496          278 -------V  278 (815)
Q Consensus       278 -------~  278 (815)
                             +
T Consensus       401 ~~cg~~~~  408 (408)
T d1h4pa_         401 NQCGTISN  408 (408)
T ss_dssp             TGGGSCCC
T ss_pred             CCCCCCCC
T ss_conf             75567889

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=100.00  E-value=0  Score=30807.86  Aligned_cols=1  Identities=0%  Similarity=-1.358  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~a~iR~~FP~l~~~~~~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llg   80 (408)
T d1t3ia_           1 PSLAATVRQDFPILNQEINGHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFIN   80 (408)
T ss_dssp             CCHHHHHGGGCGGGSCEETTEECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             96278998758256666589986983185115799999999999998668987731519999999999999999999839


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 a~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~  160 (408)
T d1t3ia_          81 ARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLL  160 (408)
T ss_dssp             CSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHC
T ss_pred             CCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCC
T ss_conf             89821377505307898888764100226899889850354411211344433026825765420123320077764224


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK~~gp~G~g~l~v~~~  240 (408)
T d1t3ia_         161 SEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEE  240 (408)
T ss_dssp             CTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHH
T ss_pred             CCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEECCCEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHH
T ss_conf             89966999965554443358089876565214730453130104643224334678648861432357887411121033


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~  320 (408)
T d1t3ia_         241 ILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQ  320 (408)
T ss_dssp             HHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHCCCCEECCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             45308965069854344455555557733543478578999999999999999708799999999877677665225764


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~~~~~~~~~~~iv~f~~~~~~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L  400 (408)
T d1t3ia_         321 LRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSL  400 (408)
T ss_dssp             EEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf             23468884446754189999589899999999966996996574225587886069960999799999999999999999


Q ss_pred             -------C
Q ss_conf             -------9
Q 003496          278 -------V  278 (815)
Q Consensus       278 -------~  278 (815)
                             .
T Consensus       401 ~~~~~~f~  408 (408)
T d1t3ia_         401 QATIRFFS  408 (408)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHC
T ss_conf             99999759

>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: 2-oxoisovalerate dehydrogenase (E1B), PP module
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=0  Score=30737.98  Aligned_cols=1  Identities=0%  Similarity=0.005  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~p~~~~~p~p~~rp~~~~d~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~vrvld~~g~~~~~~~~~l~~e~l~~~y   80 (407)
T d1qs0a_           1 NEYAPLRLHVPEPTGRPGCQTDFSYLRLNDAGQARKPPVDVDAADTADLSYSLVRVLDEQGDAQGPWAEDIDPQILRQGM   80 (407)
T ss_dssp             CCSCCCCCCCCCCSCCTTSCCCGGGSCCCCTTCSCCCCTTCCGGGGHHHHTSCBCCBCTTSCBCSGGGSSCCHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             99898545799999999988885445568876679995568911244245670899899998998778998999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 r~M~~~R~~d~~~~~l~rqG~i~~~~~~~GqEA~~vg~~~aL~~~D~~f~~yR~~g~~larG~~~~~~~~e~~g~~~g~~  160 (407)
T d1qs0a_          81 RAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPL  160 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEEECCSSCHHHHHHTTCCHHHHHHHHHTCTTCTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999999999999669730668998849999999986797798982545799999987619999999862457877


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~Gr~~~~h~~~~~~~~~~~s~~vg~q~p~AvG~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvifv~eN  240 (407)
T d1qs0a_         161 KGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVN  240 (407)
T ss_dssp             TTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             CCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEE
T ss_conf             78875443355323200025653346623356677776516760101245655433201888999873057626999987


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 N~~aist~~~~~~~~~~~~~~ra~~~Gi~~~~VDGnD~~avy~a~~~A~e~aR~g~gP~lIE~~TyR~~gHs~sDD~~~Y  320 (407)
T d1qs0a_         241 NQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKY  320 (407)
T ss_dssp             CSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGT
T ss_pred             ECCCCCCCCHHHHCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCC
T ss_conf             02301364111200100688888861865278625439999999998889985389746997741018988765554345


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 R~~~E~~~w~~~DPI~rl~~~Li~~g~~se~e~~~i~~ei~~eV~~A~~~Ae~~~~~~~~p~P~~~~lf~~VY~e~p~~l  400 (407)
T d1qs0a_         321 RPADDWSHFPLGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAASMFEDVYKEMPDHL  400 (407)
T ss_dssp             SCTTHHHHCTTCCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCCCCSSGGGSSSSSSCCHHH
T ss_pred             CCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHH
T ss_conf             89999998883897999999999879999999999999999999999999987221036899699999845225999889


Q ss_pred             ------C
Q ss_conf             ------9
Q 003496          278 ------V  278 (815)
Q Consensus       278 ------~  278 (815)
                            -
T Consensus       401 ~eQ~~el  407 (407)
T d1qs0a_         401 RRQRQEL  407 (407)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHHC
T ss_conf             9999739

>d1eu8a_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: D-maltodextrin-binding protein, MBP
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=0  Score=30732.26  Aligned_cols=1  Identities=0%  Similarity=-0.858  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~g~i~~~~~g~p~~~~~~~~~i~~F~~~~p~i~V~~~~~~~~~~~~~~~~~~~~~a~g~~PDi~~~~~~~~~~~~~~g   80 (407)
T d1eu8a_           1 IEEGKIVFAVGGAPNEIEYWKGVIAEFEKKYPGVTVELKRQATDTEQRRLDLVNALRGKSSDPDVFLMDVAWLGQFIASG   80 (407)
T ss_dssp             CCSSEEEEEECCSHHHHHHHHHHHHHHHHHSTTCEEEEEECCSSHHHHHHHHHHHHTTTCSSEEEEEEETTTHHHHHHHT
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCC
T ss_conf             97426999978976699999999999998886918999973684599999999999828999879998948899999879


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~l~dL~~~~~~~~~~~~~~~~~~~~~~~~~dG~~y~iP~~~~~~~~~yNkdl~~~~G~~~p~~T~de~~~~~~~l~~~~~  160 (407)
T d1eu8a_          81 WLEPLDDYVQKDNYDLSVFFQSVINLADKQGGKLYALPVYIDAGLLYYRKDLLEKYGYSKPPETWQELVEMAQKIQSGER  160 (407)
T ss_dssp             CBCCSHHHHHHHTCCGGGBCHHHHHHHTEETTEECCEEEEEEECEEEEEHHHHHHTTCCSCCSBHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHCCHHHHHHCHHHHHHHHCCCCEEECCCCCHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             93338576553113255404889987513454230276301234554161255542157988899999999999873045


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~  240 (407)
T d1eu8a_         161 ETNPNFWGFVWQGKQYEGLVCDFVEYVYSNGGSLGEFKDGKWVPTLNKPENVEALQFMVDLIHKYKISPPNTYTEMTEEP  240 (407)
T ss_dssp             TTCTTCEEEECCCSSSHHHHHHHHHHHHTTTCCSEEEETTEEEECTTCHHHHHHHHHHHHHHHTSCCSCGGGGTTCCHHH
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf             76775221234555544302446789984488611024677521469999999999999999705657632000001577


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~f~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~i~~~s~~~~~A~~fl~~l~s~e~  320 (407)
T d1eu8a_         241 VRLMFQQGNAAFERNWPYAWGLHNADDSPVKGKVGVAPLPHFPGHKSAATLGGWHIGISKYSDNKALAWEFVKFVESYSV  320 (407)
T ss_dssp             HHHHHHTTCEEEEEECTHHHHHHTSTTCTTTTCEEEECCCBCTTSCCCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSHHH
T ss_pred             HHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCEECCCEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf             99998568745742572888765320145455534411125678654311304202676787549999999874002789


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~eal~~~~~~  400 (407)
T d1eu8a_         321 QKGFAMNLGWNPGRVDVYDDPAVVSKSPHLKELRAVFENAVPRPIVPYYPQLSEIIQKYVNSALAGKISPQEALDKAQKE  400 (407)
T ss_dssp             HHHHHHHTCCCBSBTTGGGSHHHHHHCTHHHHTHHHHHTCBCCCCCTTHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHCHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             99999851888662777739875611967999999997285278888789999999999999985999999999999999


Q ss_pred             ------C
Q ss_conf             ------9
Q 003496          278 ------V  278 (815)
Q Consensus       278 ------~  278 (815)
                            .
T Consensus       401 ~~~~l~~  407 (407)
T d1eu8a_         401 AEELVKQ  407 (407)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHCC
T ss_conf             9999576

>d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclodextrin glycosyltransferase
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

Probab=100.00  E-value=0  Score=30727.84  Aligned_cols=1  Identities=0%  Similarity=-0.328  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~v~Y~i~~drF~~gd~~~~~~~~~~~~~~~~~~~~~~~~gGd~~gi~~kLdyl~~LGv~~I~L~Pi~~~~~~   80 (407)
T d1qhoa4           1 SSSASVKGDVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKLPYLKQLGVTTIWLSPVLDNLDT   80 (407)
T ss_dssp             CTTSCCTTCCEEEECGGGTCCSCGGGSSCGGGTTCBCTTSCSTTSBCCCCHHHHHHTHHHHHHHTCCEEEECCCEEECSS
T ss_pred             CCCHHHCCCEEEEECHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf             97132057779996355506799877766555455577655667657848999998799999769988996965207765


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~gY~~~d~~~id~~~Gt~~d~k~Lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (407)
T d1qhoa4          81 LAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYF  160 (407)
T ss_dssp             CSSTTCCCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEEEBTTBTTSTTTTCEEETTEEEECSS
T ss_pred             CCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             67889988774012224777778998899999999866302113331201455677622222223676556676555555


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~w~~~gvDGfR~D~~~~~~~~f~~~  240 (407)
T d1qhoa4         161 DDATKGYFHHNGDISNWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLVAHGADGLRIDAVKHFNSGFSKS  240 (407)
T ss_dssp             SCTTTCCBCCSCBCSCTTCHHHHHHSBCEETTTEEEEEBCTTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf             65555422246777786645342234456776655700332025678999876777865315643101101251467899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~i~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  320 (407)
T d1qhoa4         241 LADKLYQKKDIFLVGEWYGDDPGTANHLEKVRYANNSGVNVLDFDLNTVIRNVFGTFTQTMYDLNNMVNQTGNEYKYKEN  320 (407)
T ss_dssp             HHHHHHHHCCCEEEECCCCCCTTSTTHHHHHHHHHHSSCEEBCHHHHHHHHHHHTSCSSCHHHHHHHHHHHHHHCTTGGG
T ss_pred             HHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             99999742685345565588735667777631135665412102577888887640220146788999875201345202


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~f~~nHD~~R~~~~~~~~~~~~~a~a~ll~~pGiP~iyyGdE~G~~g~~d~~~r~~~~~~~~~~~~~~~~~~L~~lR~  400 (407)
T d1qhoa4         321 LITFIDNHDMSRFLSVNSNKANLHQALAFILTSRGTPSIYYGTEQYMAGGNDPYNRGMMPAFDTTTTAFKEVSTLAGLRR  400 (407)
T ss_dssp             CEECSCCTTSCCHHHHCCCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTTTCCCCCCCCTTSHHHHHHHHHHHHHH
T ss_pred             HCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             12000368854401124899999999999997279868863874397899895410137866688599999999999985


Q ss_pred             ------C
Q ss_conf             ------9
Q 003496          278 ------V  278 (815)
Q Consensus       278 ------~  278 (815)
                            -
T Consensus       401 ~~paLr~  407 (407)
T d1qhoa4         401 NNAAIQY  407 (407)
T ss_dssp             HCHHHHH
T ss_pred             HCHHHCC
T ss_conf             0984474

>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]}

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: Catalase-peroxidase KatG
domain: Catalase-peroxidase KatG
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=100.00  E-value=0  Score=30659.79  Aligned_cols=1  Identities=0%  Similarity=-1.190  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~wp~~~~~~~l~~~~~~~~p~~~~~~y~~~~~~lD~~alk~di~~l~~~s~d~wpaD~G~ygp~lVRlAWHsA   80 (406)
T d1mwva1           1 NGTSNRDWWPNQLDLSILHRHSSLSDPMGKDFNYAQAFEKLDLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSA   80 (406)
T ss_dssp             CCCCHHHHCTTSCCGGGGSCSCGGGCCSCTTCCHHHHHHTSCHHHHHHHHHHHHTCCBTTBCCGGGCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             99886666831138741356876569898887789998750599999999999745321475534662168998888763


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 gTYR~~D~RGGanGg~iRfaPe~sW~~N~~Ldkar~lLepIK~ky~~~IS~ADLivLAG~vAiE~~Gg~~i~f~~GR~d~  160 (406)
T d1mwva1          81 GTYRTADGRGGAGEGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGRADT  160 (406)
T ss_dssp             TTCCTTTCCCSSTTCGGGSTTGGGCGGGTTHHHHHHHTHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCCCCCCCBCCCCC
T ss_pred             CCCCCCCCCCCCCCCEECCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHCCCCCCCCCCCCCC
T ss_conf             24104579889987615775443578754679999999999997477754233256620788987369813777676664


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Plaa~~~gliyvnpeg~~g~pd~~~~a~~lrd~f~rMglnd~E~vAL  240 (406)
T d1mwva1         161 WEPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGNPDPVAAARDIRDTFARMAMNDEETVAL  240 (406)
T ss_dssp             SSCCCCCCCSCSSTTCCTTSTTCSEETTTEECTTCCSSSTTCSSSCTTSGGGCCCHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             33223556644443454456544566753334764444456666687645688970235899999987606870889999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 i~G~HtlG~~hg~~~~~~~g~~pe~~~~~~~g~gw~~~~~~g~~~~~~~sg~eG~wT~~P~~~dN~yF~~Ll~~~we~~~  320 (406)
T d1mwva1         241 IAGGHTFGKTHGAGPASNVGAEPEAAGIEAQGLGWKSAYRTGKGADAITSGLEVTWTTTPTQWSHNFFENLFGYEWELTK  320 (406)
T ss_dssp             HHHHTTSCBCCBSSCGGGBCCCGGGSCGGGTTCCCCBCSTTSSGGGCBSSSCCCBCCSCTTSCCSHHHHHHHHSCEEEEE
T ss_pred             HHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCCEEEC
T ss_conf             86432211135788510047754567510025666666554577766778873676799761116888656447645520


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 s~~g~~q~~~~~~~~~~pda~~~s~~~~~~ml~tDlal~~Dp~~R~iaE~YA~d~e~F~~dFa~AW~KLm~~Dmgp~~~y  400 (406)
T d1mwva1         321 SPAGAHQWVAKGADAVIPDAFDPSKKHRPTMLTTDLSLRFDPAYEKISRRFHENPEQFADAFARAWFKLTHRDMGPRARY  400 (406)
T ss_dssp             CTTCCEEEEETTCCSCEECSSCTTCEECCEECHHHHHHHHSHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCSGGGC
T ss_pred             CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHC
T ss_conf             45655245645755577766588777476402443333029888999999962999999999999999974688980202


Q ss_pred             -----C
Q ss_conf             -----9
Q 003496          278 -----V  278 (815)
Q Consensus       278 -----~  278 (815)
                           +
T Consensus       401 ~g~~~p  406 (406)
T d1mwva1         401 LGPEVP  406 (406)
T ss_dssp             BSTTCC
T ss_pred             CCCCCC
T ss_conf             699999

>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: Catalase-peroxidase KatG
domain: Catalase-peroxidase KatG
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=0  Score=30659.77  Aligned_cols=1  Identities=0%  Similarity=-1.523  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~y~~~~~~~d~~~~~~di~~l~~~~~~~wpaD~g~~gP~lVRlAWHs   80 (406)
T d1itka1           1 KRPKSNQDWWPSKLNLEILDQNARDVGPVEDDFDYAEEFQKLDLEAVKSDLEELMTSSQDWWPADYGHYGPLFIRMAWHS   80 (406)
T ss_dssp             CCCCCHHHHCTTSCCTHHHHTTSCCCSSCCTTCCHHHHHHHCCHHHHHHHHHHHHTCCBTTBCCGGGCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             99986566586444773245687667989988678999876449999999999974433357544466313676555553


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 AgTYR~sD~RGGanGariRfaPe~sW~~N~~LdkAr~lLepIK~kyg~~IS~ADLivLAG~vAiE~~ggp~i~f~~GR~D  160 (406)
T d1itka1          81 AGTYRTADGRGGAAGGRQRFAPINSWPDNANLDKARRLLLPIKQKYGQKISWADLMILAGNVAIESMGFKTFGYAGGRED  160 (406)
T ss_dssp             HTTCCTTTCCCSSTTCGGGSTTGGGCGGGTTHHHHHHHTHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCCCSCCCBCCCC
T ss_pred             HCCEECCCCCCCCCCCEECCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHEEHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             10011257888998762575666266777422999999999998627355443042000155564426863224557765


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 a~~~~~d~~~g~~~e~~~d~~~~~~~~l~~pl~a~~~~liyv~Peg~~g~~d~~~~a~~lrd~f~rMgl~d~E~VALigG  240 (406)
T d1itka1         161 AFEEDKAVNWGPEDEFETQERFDEPGEIQEGLGASVMGLIYVNPEGPDGNPDPEASAKNIRQTFDRMAMNDKETAALIAG  240 (406)
T ss_dssp             CSSCCTTCCCCSCSSTTCCCSCSSTTCCCTTCSCSSTTCSSSCTTCGGGCCCHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf             55655554557655656666677655555430013235555688665677884115899999999824881999998750


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~htlG~~hg~~~~~~~~g~~Pe~~~~~~~g~g~~~~~~~g~g~~~~~sG~~G~wT~~p~~~~N~yF~~Ll~~~w~~~~s~  320 (406)
T d1itka1         241 GHTFGKVHGADDPEENLGPEPEAAPIEQQGLGWQNKNGNSKGGEMITSGIEGPWTQSPTEWDMGYINNLLDYEWEPEKGP  320 (406)
T ss_dssp             HTTSCEECBSSCHHHHBCCCGGGSCGGGTTCCCCBCC-------CBSSSCCEESSSSTTSCSSHHHHHHHHSCEEEEECT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEECC
T ss_conf             24246335788743357878655544346764457888775765545775544455434345612100135565410036


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~g~~~~~~~~~~~~~~~pda~~~~~~~~~~ml~tDlaL~~Dp~~R~iaE~YA~d~e~F~~DFa~Aw~KL~~~D~gp~~ry  400 (406)
T d1itka1         321 GGAWQWAPKSEELKNSVPDAHDPDEKQTPMMLTTDIALKRDPDYREVMETFQENPMEFGMNFAKAWYKLTHRDMGPPERF  400 (406)
T ss_dssp             TSCEEEEESSSTTTTCEECSSCTTCEECCCBCHHHHHHHHSHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCSGGGC
T ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             77437526776544577756566775577503667876009878999999960999999999999999972678983345


Q ss_pred             -----C
Q ss_conf             -----9
Q 003496          278 -----V  278 (815)
Q Consensus       278 -----~  278 (815)
                           +
T Consensus       401 ~gp~~p  406 (406)
T d1itka1         401 LGPEVP  406 (406)
T ss_dssp             BSTTCC
T ss_pred             CCCCCC
T ss_conf             799999

>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]}

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: Catalase-peroxidase KatG
domain: Catalase-peroxidase KatG
species: Synechococcus sp. pcc 7942 [TaxId: 1140]

Probab=100.00  E-value=0  Score=30658.97  Aligned_cols=1  Identities=0%  Similarity=-0.560  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~wp~~~~~~~l~q~~~~~~p~~~~~~y~~~~~~ld~a~k~Dl~~l~~~s~~~wpaD~G~ygP~lVRlAWhsAgTYR   80 (406)
T d1ub2a1           1 STAEWWPKALNLDILSQHDRKTNPMGPDFNYQEEVQKLDAALKQDLQALMTDSQDWWPADWGHYGGLMIRLTWHAAGTYR   80 (406)
T ss_dssp             CTTSSCTTSCCGGGGSCSCTTTCCSCTTCCHHHHHTTSCSTTHHHHHHHTTCCCTTSCCGGGCCHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf             97555887768521015887679899997889999999999999999997455234755457621377865554014321


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~sD~RGGanGgriRfaP~~sW~~N~~LdkAr~lL~pIK~ky~~~IS~ADLivLAG~vAiE~agg~ti~f~~GR~Da~~~~  160 (406)
T d1ub2a1          81 IADGRGGAGTGNQRFAPLNSWPDNTNLDKARRLLWPIKQKYGNKLSWADLIAYAGTIAYESMGLKTFGFAFGREDIWHPE  160 (406)
T ss_dssp             TTTCCCSSTTCGGGSTTGGGCGGGTTHHHHHHHTHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCSSCC
T ss_pred             CCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             67898899877446822304566318899999998887642876531137776129999873498335677766666776


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~dv~~g~~~e~l~~~~~~~~~~~~~~~l~~pl~a~~~~liyvnP~g~~g~pd~~~~a~~ir~~f~rM~mnd~E~vAL~aG  240 (406)
T d1ub2a1         161 KDIYWGPEKEWFPPSTNPNSRYTGDRELENPLAAVTMGLIYVNPEGVDGNPDPLKTAHDVRVTFARMAMNDEETVALTAG  240 (406)
T ss_dssp             TTCCCCSCSSSSCCSSSTTCSEETTTEECTTCCSSSTTCSSCCTTSBTTBCCHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             55455554455788767544467754322465420157311177534678974555788655677753788998642153


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~ht~Gk~hg~~~~~~~g~~p~g~~~e~~g~~~~n~~~~g~g~~t~tSg~eg~wt~~p~~~dn~yF~~ll~~~~W~~~ks~  320 (406)
T d1ub2a1         241 GHTVGKCHGNGNAALLGPEPEGADVEDQGLGWINKTQSGIGRNAVTSGLEGAWTPHPTQWDNGYFAVCSLNYDWELKKNP  320 (406)
T ss_dssp             HHTSCCBCBCSCSTTBCCCGGGSCGGGTTCCSCBCSSCCSGGGCBSSSCCBBSSSCTTSCSSTTTTTTTSSSCEEEEECT
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHCCCCC
T ss_conf             31002136777501237655565410067766777773646666688888777656443467412333205640102453


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~ga~q~~~~~~~~~~~~~~~~d~s~~~~~~mt~tDLal~~Dp~~R~iaE~Ya~d~e~F~~dFa~AW~KL~~~Dmgp~~~~  400 (406)
T d1ub2a1         321 AGAWQWEPINPREEDLPVDVEDPSIRRNLVMTDADMAMKMDPEYRKISERFYQDPAYFADVFARAWFKLTHRDMGPKARY  400 (406)
T ss_dssp             TSCEEEEESSCCGGGSCBCSSCTTSBCCBCBCHHHHHHHHSHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCSGGGC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHC
T ss_conf             30114455675323477755477777577503567763108878999999971999999999999999971677976531


Q ss_pred             -----C
Q ss_conf             -----9
Q 003496          278 -----V  278 (815)
Q Consensus       278 -----~  278 (815)
                           +
T Consensus       401 ~g~~~p  406 (406)
T d1ub2a1         401 IGPDVP  406 (406)
T ss_dssp             BSTTCC
T ss_pred             CCCCCC
T ss_conf             799999

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=30658.66  Aligned_cols=1  Identities=0%  Similarity=0.038  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~   80 (406)
T d1u2za_           1 SSTFVDWNGPCLRLQYPLFDIEYLRSHEIYSGTPIQSISLRTNSPQPTSLTSDNDTSSVTTAKLQSILFSNYMEEYKVDF   80 (406)
T ss_dssp             CCBSSCTTSCEEECCSCCBCHHHHHHCCCCCCCCCCGGGCCC------------------EEEEECSSCTTCEEEEECCS
T ss_pred             CCCCCCCCCCCCCCCCCEECHHHHHHHHHCCCCCCCCCCEECCCCCHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEEEC
T ss_conf             97532587743465553020665310553379877772000477771443068876898605887324666103788850


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~p~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~i~~~~~~~~~~~l~~~~  160 (406)
T d1u2za_          81 KRSTAIYNPMSEIGKLIEYSCLVFLPSPYAEQLKETILPDLNASFDNSDTKGFVNAINLYNKMIREIPRQRIIDHLETID  160 (406)
T ss_dssp             SSCCSSSCHHHHHHHHHHHHHHTTCCTTHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             56524569899999999999986488489999999999999998742799999999999999999866615988876267


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~i~~~~y~r~v~p~~~~L~~Y~~fs~~vYGEl~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~  240 (406)
T d1u2za_         161 KIPRSFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGC  240 (406)
T ss_dssp             EEEHHHHHHHHHHHHHHHTGGGGGGGCSCCSSGGGCCCCBCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCC
T ss_conf             88889999998886446036886776266789977403478899999999838999998996789875999999997699


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~  320 (406)
T d1u2za_         241 ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKIL  320 (406)
T ss_dssp             SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf             76999848999999999999987555555303566520334404221654224545643999733167367999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 r~LKPGGrIVs~~~~~~~~~~it~r~~~~~~~il~v~~~~~~~~sVSWt~~~v~yyl~tv~~~i~~~~f~~~~~~R~~r~  400 (406)
T d1u2za_         321 QTAKVGCKIISLKSLRSLTYQINFYNVENIFNRLKVQRYDLKEDSVSWTHSGGEYYISTVMEDVDESLFSPAARGRRNRG  400 (406)
T ss_dssp             TTCCTTCEEEESSCSSCTTCCCCSSSTTCGGGGEEEEEEECCTTCBTTBSSCCEEEEEEECSSCCGGGSCCC------C-
T ss_pred             HHCCCCCEEEEECCCCCCCHHHHHHCCCCCHHCCCCHHHCCCCCCCEEECCCCCEEHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             72699828999114678740145520353000033132145336633466987653739998888721462113553347


Q ss_pred             -----C
Q ss_conf             -----9
Q 003496          278 -----V  278 (815)
Q Consensus       278 -----~  278 (815)
                           .
T Consensus       401 ~P~kyt  406 (406)
T d1u2za_         401 TPVKYT  406 (406)
T ss_dssp             --CCBC
T ss_pred             CCCCCC
T ss_conf             888889

>d1ei6a_ c.76.1.4 (A:) Phosphonoacetate hydrolase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: Alkaline phosphatase-like
superfamily: Alkaline phosphatase-like
family: Phosphonoacetate hydrolase
domain: Phosphonoacetate hydrolase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=100.00  E-value=0  Score=30656.68  Aligned_cols=1  Identities=0%  Similarity=-0.127  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~vi~I~iD~l~~~~l~~~~~~~~TPnid~La~~G~~f~~~~~~~~~c~PsrasllTG~yp~~hG   80 (406)
T d1ei6a_           1 TNLISVNSRSYRLSSAPTIVICVDGCEQEYINQAIQAGQAPFLAELTGFGTVLTGDCVVPSFTNPNNLSIVTGAPPSVHG   80 (406)
T ss_dssp             CCEEEETTEEEECCSSCEEEEECTTCCHHHHHHHHHTTSCHHHHHGGGTSEEEEEECCSSCCHHHHHHHHHHTSCHHHHC
T ss_pred             CCEEEECCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCHHHCC
T ss_conf             96484786104678998899997899978874005557991899999689348322049971589999999678988879


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (406)
T d1ei6a_          81 ICGNFFFDQETQEEVLMNDAKYLRAPTILAEMAKAGQLVAVVTAKDKLRNLLGHQLKGICFSAEKADQVNLEEHGVENIL  160 (406)
T ss_dssp             CCSSEEEETTTTEEEECCSGGGCCSCCHHHHHHHTTCCEEEEESSHHHHHHHTTTCCSEEEESTTCSSCCHHHHSCCCHH
T ss_pred             CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             57775446554410100332123456544311123465302114565645555430321456567786523444543221


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~i~~l~~~~~~~~~~~d  240 (406)
T d1ei6a_         161 ARVGMPVPSVYSADLSEFVFAAGLSLLTNERPDFMYLSTTDYVQHKHAPGTPEANAFYAMMDSYFKRYHEQGAIVAITAD  240 (406)
T ss_dssp             HHHTCCCCCSSSTHHHHHHHHHHHHHHHTTCCSEEEEECCCHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             10233222123332102444432220247884201123433334456899889999999999999999867966999934


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (406)
T d1ei6a_         241 HGMNAKTDAIGRPNILFLQDLLDAQYGAQRTRVLLPITDPYVVHHGALGSYATVYLRDAVPQRDAIDFLAGIAGVEAVLT  320 (406)
T ss_dssp             CCCEECBCTTSCBCEEEHHHHHHHHHCTTSEEEECTTSCTTCCBGGGCBSEEEEEECTTSCHHHHHHHHHTSTTEEEEEE
T ss_pred             CCCCCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHHHCC
T ss_conf             54345675223320232144201110110000245422210000122320234313327899999998752365223304


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~~~~~~~~~~igdii~~sd~g~~lg~~~~~~~~s~~~~~~~~hGg~~e~~VPlIi~~P~~~~~~~~~i~~~Di~d~  400 (406)
T d1ei6a_         321 RSQACQRFELPEDRIGDLVVLGERLTVLGSAADKHDLSGLTVPLRSHGGVSEQKVPLIFNRKLVGLDSPGRLRNFDIIDL  400 (406)
T ss_dssp             HHHHHHHHTCCGGGSCSEEEEECTTCEEESCTTTCBGGGCCSCCEECCSGGGCEEEEEESSCBCCCC--CCCBGGGHHHH
T ss_pred             HHHHHHHCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEECHHHH
T ss_conf             98999973999787466999956996877455445433467767565651147308799558656777884325061887


Q ss_pred             -----C
Q ss_conf             -----9
Q 003496          278 -----V  278 (815)
Q Consensus       278 -----~  278 (815)
                           .
T Consensus       401 ~~~~~~  406 (406)
T d1ei6a_         401 ALNHLA  406 (406)
T ss_dssp             HHHCBC
T ss_pred             HHHHCC
T ss_conf             763039

>d2ayia1 e.60.1.1 (A:3-408) Aminopeptidase T {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Thermophilic metalloprotease-like
superfamily: Thermophilic metalloprotease-like
family: Thermophilic metalloprotease (M29)
domain: Aminopeptidase T
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=0  Score=30653.66  Aligned_cols=1  Identities=100%  Similarity=1.300  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~L~k~A~llV~~~l~vqkGe~VlI~a~~~~~~Lvral~e~A~~~GA~pv~v~~~d~~i~r~~~~~a~~e~l~~~p~   80 (406)
T d2ayia1           1 AFKRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVIYGDQELARKRLALAPEEGLDKAPA   80 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEECCHHHHHHHHHHSCTTCTTCCCH
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCHHHHHHCCH
T ss_conf             96799999999999971268999989997166569999999999998699738996067699999996399988743624


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~a~i~I~~~np~~l~~vdp~ki~~~~ka~~~~~~~~~~~~~~~~~~W~i~~~P~~~~A~~~~~~l~~  160 (406)
T d2ayia1          81 WLYEGMARAFREGAARLAVSGSDPKALEGLPPEKVGRAQKANARAYKPALEAITEFVTNWTIVPFAHPGWARAVFPGLPE  160 (406)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSSCBCBEECCCTTTHHHHCCCSCH
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCCH
T ss_conf             46889999997189289961698520126996899999998899879999998536566399975782177661789767


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~e~~~~l~d~if~~~~ld~~dp~~~w~~~~~~l~~~~~~L~~~~~~~~~~~~~GTDL~~~i~~~~~w~~~~~~~~~g~~~  240 (406)
T d2ayia1         161 EEAVRRLWEAIFQATRADQEDPIAAWEAHNRALHEKVAYLNARRFHALHFKGPGTDLVVGLAEGHLWQGGATATKGGRLC  240 (406)
T ss_dssp             HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEEECCTTBCCEESSCCCSSSCCC
T ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             89999999999976346651079999999999999999985165148996389369999945884015887642278767


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~NlP~GEvftaP~e~svnG~i~~d~~~~~~g~l~~~i~l~f~~G~vv~~~~~~~~~~l~~~~~~d~~a~~lgE~~ig~n  320 (406)
T d2ayia1         241 NPNLPTEEVFTAPHRERVEGVVRASRPLALGGTLVEGIFARFERGFAVEVRAEKGEEVLRRLLDTDEGARRLGEVALVPA  320 (406)
T ss_dssp             CSBSSCCCEEECCCTTCEEEEEECSSCEEETTEEEBSCEEEEETTEEEEEECSBCHHHHHHHTTSSSGGGSEEEEECCCT
T ss_pred             CCCCCCCCEEEEECCCCEEEEEECCCCCCCCCEECCCCEEEEECCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEEECC
T ss_conf             68899832585020484211998045454433303473799948879997557649999987624867636788876047


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~~~~~~~~n~L~DE~gt~Hia~G~~Y~~~~~g~~~~~~~~~~g~n~s~~H~D~~~~~~~~~~dgv~~dG~~~~i~~  400 (406)
T d2ayia1         321 DNPIAKTGLVFFDTLFDENAASHIAFGQAYQENLEGRPSGEAFRKRGGNESLVHVDWMIGSEEMDVDGLYEDGTRTPLMR  400 (406)
T ss_dssp             TSHHHHHTCCCCCHHHHHTTSCEEEEECCCGGGBCC---CCSHHHHTCCCCSCEEEEECCCTTCEEEEECTTSCEEEEEE
T ss_pred             CCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEE
T ss_conf             88540345111330587478604766876411134788756763079806644786713887178999984891889988


Q ss_pred             -----C
Q ss_conf             -----9
Q 003496          278 -----V  278 (815)
Q Consensus       278 -----~  278 (815)
                           -
T Consensus       401 ~G~f~i  406 (406)
T d2ayia1         401 RGRWVV  406 (406)
T ss_dssp             TTEECC
T ss_pred             CCEEEC
T ss_conf             989969

>d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclodextrin glycosyltransferase
species: Thermoanaerobacterium [TaxId: 28895]

Probab=100.00  E-value=0  Score=30649.45  Aligned_cols=1  Identities=0%  Similarity=-0.195  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~viY~i~~drF~~g~~~~d~~~~~~~~~~~~~~~~~gGdl~Gi~~kLd~~YLk~LGv~~I~L~Pi~   80 (406)
T d3bmva4           1 ASDTAVSNVVNYSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINKINDGYLTGMGVTAIWIPQPV   80 (406)
T ss_dssp             CCTTSTTCTTCCTTCCEEECCGGGTCCCCGGGSCCGGGBCTTSCSTTSBCCCCHHHHHHHHHTSTTGGGTCCEEEECCCE
T ss_pred             CCCCCCCCCCCCCCCEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCEEEECCCC
T ss_conf             98766678888753708996123306899777878876577777657667858999987448888987597789979753


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~gY~~~d~~~vdp~~Gt~~dfk~LV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~  160 (406)
T d3bmva4          81 ENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYD  160 (406)
T ss_dssp             EECCCCEEETTTEEECSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEE
T ss_pred             CCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCC
T ss_conf             56544567777789712127665235456844461899999999997436431365201566566522012034675356


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~~~~~giDGfR~D~~~~~~~~~~  240 (406)
T d3bmva4         161 NGTLLGGYTNDTNGYFHHYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWLDMGIDGIRLDAVKHMPFGWQ  240 (406)
T ss_dssp             TTEEEECSTTCTTCCBCCSCBCCCSSHHHHHHSBSTTEEEBCTTSHHHHHHHHHHHHHHHHTTCCEEEESCGGGSCHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf             87411466545566434556764445666311245554210226689999999887777530777532245444632568


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (406)
T d3bmva4         241 KNFMDSILSYRPVFTFGEWFLGTNEIDVNNTYFANESGMSLLDFRFSQKVRQVFRDNTDTMYGLDSMIQSTASDYNFIND  320 (406)
T ss_dssp             HHHHHHHHHHSCCEEEECCCCCTTCCCHHHHHHHHHSSSEEBCHHHHHHHHHHHTSCSSCHHHHHHHHHHHHHHCTTGGG
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHH
T ss_conf             99988888753212334333455100022110247776500122023788876405740267789987620013443344


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~fl~nHD~~R~~~~~~~~~~~~a~~~~lt~pG~P~IyyGdE~g~~g~~dp~~r~~~~~~~~~~~~~~~~~~Li~lRk~  400 (406)
T d3bmva4         321 MVTFIDNHDMDRFYNGGSTRPVEQALAFTLTSRGVPAIYYGTEQYMTGNGDPYNRAMMTSFNTSTTAYNVIKKLAPLRKS  400 (406)
T ss_dssp             CEECSCCSSSCCSCCSSCSHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTGGGCCCCCCCTTSHHHHHHHHHTTHHHH
T ss_pred             HCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCHHHCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             32566677646660688799999999999971797777657653868998824440489877896999999999999863


Q ss_pred             -----C
Q ss_conf             -----9
Q 003496          278 -----V  278 (815)
Q Consensus       278 -----~  278 (815)
                           -
T Consensus       401 ~paLry  406 (406)
T d3bmva4         401 NPAIAY  406 (406)
T ss_dssp             CHHHHH
T ss_pred             CHHHCC
T ss_conf             944159

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=0  Score=30586.95  Aligned_cols=1  Identities=0%  Similarity=-1.259  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~l~~~D~ei~~~i~~e~~rq~~~l~LiaSEN~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~   80 (405)
T d1kl1a_           1 MKYLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQ   80 (405)
T ss_dssp             CCHHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             93155549999999999999997691586067767899999856752475768899964607762299999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 lF~a~~anVqp~SGs~An~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~  160 (405)
T d1kl1a_          81 LFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKAR  160 (405)
T ss_dssp             HHCCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHH
T ss_pred             HHCCCCCEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCHHCCCCCHHHHHHHHH
T ss_conf             83999414414676588999999844899878873035566445676223364588877732313025313999999998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~aDvvt~tThKtlrGPrgg~I~~~~  240 (405)
T d1kl1a_         161 LHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQE  240 (405)
T ss_dssp             HHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSCEEEEECH
T ss_pred             HHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCEEECCHHHHHHHHHHHHCCCHHHHHHHEECCCCCCCCCCCCCEEEECC
T ss_conf             62765377523146665586999998764198786035667665443126984652110323355334677773587500


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~~vv~ggTd~H~vlvdl~~~  320 (405)
T d1kl1a_         241 QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQ  320 (405)
T ss_dssp             HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGG
T ss_pred             HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEECCCCCC
T ss_conf             35777776508653468415678899999998738388999999999888999998648943435887664563243446


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~~~~~~~~~~ir~~V  400 (405)
T d1kl1a_         321 QLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVGSEQALEEARQRV  400 (405)
T ss_dssp             TCCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             77499999999980959767869899999998872265688998589988999999999999996589679999999999


Q ss_pred             ----C
Q ss_conf             ----9
Q 003496          278 ----V  278 (815)
Q Consensus       278 ----~  278 (815)
                          .
T Consensus       401 ~~L~~  405 (405)
T d1kl1a_         401 AALTD  405 (405)
T ss_dssp             HHHHC
T ss_pred             HHHHC
T ss_conf             99639

>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}

class: Membrane and cell surface proteins and peptides
fold: Proton glutamate symport protein
superfamily: Proton glutamate symport protein
family: Proton glutamate symport protein
domain: Proton glutamate symport protein
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=0  Score=30584.35  Aligned_cols=1  Identities=0%  Similarity=-0.626  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 l~~rili~lv~Gi~~G~~~~~~~~~~~~~~~l~~~g~lFi~lL~m~v~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~   80 (405)
T d2nwwa1           1 VLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLL   80 (405)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHTTTTHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHH
T ss_conf             98899999999999999972222127899999989999999999999999999999999745501002089999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 tt~iA~~igl~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~l~~~iP~Ni~~al~~~~~l~vi~fail~Gial~~~~~~  160 (405)
T d2nwwa1          81 TSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNS  160 (405)
T ss_dssp             HHHHHHHHHHHHHHHSCSCCCCCCCCCCCCCCCCCCCCHHHHHGGGSCSCHHHHHHSCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             99999999999999860133322000000014311001899999705587899964678630356788889999985022


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~l~~~~~~l~~v~~kii~~im~laPigvf~l~a~~~~~~g~~~l~~l~~~~~~~~~~~~l~~~~~~~i~~  240 (405)
T d2nwwa1         161 ENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLL  240 (405)
T ss_dssp             SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             00345667889999999999999999898887778889999998753334555567899999999999999888889999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~p~~~~~~~~~~~~~Af~T~SS~atlP~~~~~~~~~gv~~~i~~fvlPlgatin~~G~a~~~~~~~~f~a~~~g~  320 (405)
T d2nwwa1         241 KIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGS  320 (405)
T ss_dssp             HTTTCCHHHHHHHHHHHHHHHHHHCCTGGGHHHHHHHHHTTTCCTTTHHHHTTTTSSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHCCCCHHHHHHHCCCHHHEEEECCCCCCCCHHHHHHHHHCCCCCCCCCEECCCCHHEECCCCHHHHHHHHHHHHHHCCC
T ss_conf             98289848884322310421200166556617899999975999352010236302100364124899999999987197


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~l~~~~~~~~~~~~~l~s~g~~gvPg~~~v~~~~vl~~~glP~~~~~~~~~i~li~~id~l~D~~rT~~Nv~gd~~~a~i  400 (405)
T d2nwwa1         321 HLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAI  400 (405)
T ss_dssp             CCCSSTTHHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTCCTTSHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHE
T ss_conf             99989999999999999986178616799999999998699886410565888887498550550898828776588841


Q ss_pred             ----C
Q ss_conf             ----9
Q 003496          278 ----V  278 (815)
Q Consensus       278 ----~  278 (815)
                          .
T Consensus       401 v~k~e  405 (405)
T d2nwwa1         401 VAKTE  405 (405)
T ss_dssp             HHHHC
T ss_pred             EECCC
T ss_conf             33579

>d1h6za3 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N-terminal domain {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Pyruvate phosphate dikinase, N-terminal domain
domain: Pyruvate phosphate dikinase, N-terminal domain
species: Trypanosoma brucei [TaxId: 5691]

Probab=100.00  E-value=0  Score=30581.83  Aligned_cols=1  Identities=0%  Similarity=-0.660  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~lVGGK~AnLgel~~~GipVP~GFvITt~Ay~~Fl~~n~L~~~i~~~i~~~l~~~~~~~   80 (405)
T d1h6za3           1 VAKKWVYYFGGGNADGNKNMKELLGGKGANLAEMVNLGIPVPPGFTITTEACKTYQETETIPQEVADQVRENVSRVEKEM   80 (405)
T ss_dssp             CCCCCEEEECSSSCSCCTTCHHHHHHHHHHHHHHHHTTCCCCCEEEECHHHHTTTTTSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99747997399865578455750568899899999786999998886299999999738976889999999997664776


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  160 (405)
T d1h6za3          81 GAKFGDPANPLLFSVRSGAAASMPGMMDTVLNLGLNKVTVDAWVRRAPRLERFVYDSYRRFITMYADIVMQVGREDFEEA  160 (405)
T ss_dssp             CCBTTCTTSBCCEEEEESCTTC-----CCCCSBSCCHHHHHHHGGGCGGGHHHHHHHHHHHHHHHHHHHHCCCSTTTSTT
T ss_pred             HHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf             66523543115553023210122100455666665456689998742550566899999999763011246305678898


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~v~~S~~~~~a~~yr~~~~~~~~~~~~  240 (405)
T d1h6za3         161 LSRMKERRGTKFDTDLTASDLKELCDGYLELFELKTGCSFPQDPVMQLFAAIKAVFRSWGNPRATIYRRMNNITGLLGTA  240 (405)
T ss_dssp             THHHHHHHSCSCGGGCCHHHHHHHHHTTHHHHHHHSSSCCCCCHHHHHHHHHHHHHHTTTCTTTTTHHHHSCCCSCCCCC
T ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHH
T ss_conf             88888751651124572888887888999866541387541054677678888987620572377778761754113331


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~v~~~~~~~~~~sgv~~t~~~~tG~~~~~~~~~~~g~~~~vv~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (405)
T d1h6za3         241 VNVQAMVFGNINDRSATGVAFSRSPSTGENFFFGEYLVNAQGEDVVAGIRTPQQINHSLSLRWAKAHGVGEEERRKRYPS  320 (405)
T ss_dssp             EEEEECCCSCSSTTCEEEEEESSCSSSCCSSCEEEEEESCCTTHHHHCCSCCEESSHHHHHHHHTTSSCCHHHHHHHSCC
T ss_pred             HEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCEEEEECCCCHHHCCCCCEECCCCCCCC
T ss_conf             11234542135665443334556777898753368646676233213765770466403310100145321104665545


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~l~~e~~~~La~l~~~iE~~fg~PqDIEWAi~dg~L~ILQaRPv~~t~~a~~~~~~~~~~~~~~~~~~~~~~~~p~~~  400 (405)
T d1h6za3         321 MEEAMPENYRLLCDVRKRLENHYRDMQDLEFTVQDGRLWLLQCRNGKRTIHAAVRIAIDMVNEGLISREEAVLRIDPYQV  400 (405)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHTSCEEEEEEEETTEEEEEEEEECCCCHHHHHHHHHHHHHHTSSCHHHHHHTSCGGGG
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHH
T ss_conf             55528799999999999999982998204999989989999766788668889999999997699798999872798278


Q ss_pred             ----C
Q ss_conf             ----9
Q 003496          278 ----V  278 (815)
Q Consensus       278 ----~  278 (815)
                          .
T Consensus       401 ~~~~~  405 (405)
T d1h6za3         401 DHLMH  405 (405)
T ss_dssp             GGGGC
T ss_pred             HHHCC
T ss_conf             67448

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=30575.90  Aligned_cols=1  Identities=0%  Similarity=-1.456  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 m~d~~~vR~~FP~l~~~~~~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~   80 (405)
T d1jf9a_           1 IFSVDKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFIN   80 (405)
T ss_dssp             CCCHHHHHHTCGGGGCEETTEECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHCHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             98979998758211467189982997382006899999999999998666987630409999999999999999999839


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~~i  160 (405)
T d1jf9a_          81 ARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLF  160 (405)
T ss_dssp             CSCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHC
T ss_conf             98755430237688897788842331026789989998375331699999999973968999877998838799999753


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK~~Gp~G~g~l~v~~~  240 (405)
T d1jf9a_         161 DEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEA  240 (405)
T ss_dssp             CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCSSCEEEEECHH
T ss_pred             CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEECCCCEECCCCCCCHHHCCCCEEECCCCCCCCCCCCEEEEECHH
T ss_conf             69957999966777655438467766678873975641554000015653333078646613230156887510242265


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~  320 (405)
T d1jf9a_         241 LLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVP  320 (405)
T ss_dssp             HHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTST
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             54036863223565675344555655553224307787677899999999999981849999999999988776651388


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~~~~~r~~ivsf~~~~~~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i  400 (405)
T d1jf9a_         321 DLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRI  400 (405)
T ss_dssp             TEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             65556876767479997389899999999987892997660321567886099988999788999999999999999999


Q ss_pred             ----C
Q ss_conf             ----9
Q 003496          278 ----V  278 (815)
Q Consensus       278 ----~  278 (815)
                          .
T Consensus       401 ~r~~~  405 (405)
T d1jf9a_         401 HRLLG  405 (405)
T ss_dssp             HHHHC
T ss_pred             HHHCC
T ss_conf             99609

>d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: PepX catalytic domain-like
domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=0  Score=30574.93  Aligned_cols=1  Identities=0%  Similarity=-0.461  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~g~~~~~~~~~~~~re~v~v~~~~dt~rDG~~d~l~~di~rP~~~~k~Pvil~~sPY~~~~~~~~~~~~~~~   80 (405)
T d1lnsa3           1 LDNHYHFFNDKSLATFDSSLLEREVLWVESPVDSEQRGENDLIKIQIIRPKSTEKLPVVMTASPYHLGINDKANDLALHD   80 (405)
T ss_dssp             CCSSCCEETTEECSCSCGGGCEEEEEEEECSCCTTCSSSCCEEEEEEEECCCSSCEEEEEEECSSTTCCCHHHHHHHCCC
T ss_pred             CCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf             98855433783413205887568688982888878899874799999742889974599996786787766544322345


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GYavv~~D~RG~g~S~G~~~~~~~~  160 (405)
T d1lnsa3          81 MNVELEEKTSHEIHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQTSGDYQ  160 (405)
T ss_dssp             CCCCCCCCCSEECCCCCCCCCCCCCCCCCCCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCCCTTSHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHH
T ss_conf             65433445543333233454222234555665555654455664445568898679879997888788999755468866


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 e~~D~~~~IeWl~~~~~~~~~~~~~~~~~q~WsnGkVGm~G~SY~G~~q~~aA~~~pp~LkAivp~~~~~d~y~~~~~~G  240 (405)
T d1lnsa3         161 QIYSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENG  240 (405)
T ss_dssp             HHHHHHHHHHHHTTSSCEESSTTCCCEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSS
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHCCC
T ss_conf             63009999999871563333433443211454387458995289999999998608865419994476655888754178


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~w~~~s~~~~~~~I~vP~L~i~G  320 (405)
T d1lnsa3         241 LVRSPGGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHG  320 (405)
T ss_dssp             SBCCCTTCTTCCHHHHHHHHCGGGGSHHHHHHHHHHHHHHHHHHHHHHCTTTCCCCHHHHTTBGGGGGGGCCSEEEEEEE
T ss_pred             CCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHCHHHHHHCCCHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCEEEEEE
T ss_conf             40035421255666653146655555400221115565154203455541233233555536853565137988899975


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 w~D~~v~~~~~~~~y~al~~~~~~~Lilgpw~H~~~~~~~~~d~~~~~~~wFD~~LkG~~ng~~~~~~~~~~~~g~~~W~  400 (405)
T d1lnsa3         321 LQDWNVTPEQAYNFWKALPEGHAKHAFLHRGAHIYMNSWQSIDFSETINAYFVAKLLDRDLNLNLPPVILQENSKDQVWT  400 (405)
T ss_dssp             TTCCSSCTHHHHHHHHHSCTTCCEEEEEESCSSCCCTTBSSCCHHHHHHHHHHHHHTTCCCCCCCCSEEEECTTSSSCEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCC
T ss_conf             06889897899999999873799379995887899765555369999999999986889889898987999737999741


Q ss_pred             ----C
Q ss_conf             ----9
Q 003496          278 ----V  278 (815)
Q Consensus       278 ----~  278 (815)
                          -
T Consensus       401 ~~~~W  405 (405)
T d1lnsa3         401 MMNDF  405 (405)
T ss_dssp             EESCS
T ss_pred             CCCCC
T ss_conf             08989

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=100.00  E-value=0  Score=30502.44  Aligned_cols=1  Identities=0%  Similarity=-1.888  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~y~p~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~   80 (404)
T d1z7da1           1 KTPEDYINNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFS   80 (404)
T ss_dssp             CCHHHHHHHHHHHBCCCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEE
T ss_pred             CCHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEECCCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf             98799997787617888999885699946388997998999983306887846259699999999999857886665102


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~  160 (404)
T d1z7da1          81 VPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNF  160 (404)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             79999997444314433024410243037789999998875213443222442222245788744333456554455677


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~  240 (404)
T d1z7da1         161 GPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLC  240 (404)
T ss_dssp             -----CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSG
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC
T ss_conf             88876300236656899999706997799999778388897409999999999999881978999767547774434345


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~e~~gv~PDivt~gK~l~gG~~p~~~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~  320 (404)
T d1z7da1         241 VHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFL  320 (404)
T ss_dssp             GGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCHHHHH
T ss_conf             00059887778872311289887554456399871478998576889895013555544344300003443001015789


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~~ir~~Ppl~it~~~id~~~~~l~~al  400 (404)
T d1z7da1         321 ENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTV  400 (404)
T ss_dssp             HHHHHHHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEEEEECCEEEEEECCCCCCHHHHHHHHHHCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf             99999975699727887527199999748865599999999969938943899989997986789999999999999999


Q ss_pred             ---C
Q ss_conf             ---9
Q 003496          278 ---V  278 (815)
Q Consensus       278 ---~  278 (815)
                         .
T Consensus       401 k~~~  404 (404)
T d1z7da1         401 KFFD  404 (404)
T ss_dssp             HHHC
T ss_pred             HHHC
T ss_conf             9629

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=30502.97  Aligned_cols=1  Identities=0%  Similarity=-1.157  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~P~Pi~~~~Dp~dR~v~~~P~~~~pyD~R~~i~g~~~~~~~~~~i~D~~sF~E~~~~~a~svVtG~ARL~G~PVGVIAn   80 (404)
T d1uyra2           1 NMPVPILETKDTWDRPVDFTPTNDETYDVRWMIEGRETESGFEYGLFDKGSFFETLSGWAKGVVVGRARLGGIPLGVIGV   80 (404)
T ss_dssp             TSCCCCCCCSSCSSSCCCCCCCSSSCCCHHHHHHCEEETTEEECCSSCTTCCEEESTTSCTTEEEEEEEETTEEEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCEEEEEEEECCEEEEEEEE
T ss_conf             98989789999800135657899999777999846755555445010287025520046786699999999999999986


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 e~~~~~g~i~aDpa~~~s~~~~~~~~Ggv~~p~sA~K~A~~i~d~cd~~~lPLi~l~D~pGF~~G~~~E~~gilr~GA~i  160 (404)
T d1uyra2          81 ETRTVENLIPADPANPNSAETLIQEPGQVWHPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFI  160 (404)
T ss_dssp             CCSCEEEEECCCTTCSSCCCEEEEECTTCBCHHHHHHHHHHHHHHHTTSCCCEEECCCCCCBCC------CTHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             76102687568755653055565404786685579999999998652346645886137766676899987899999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 v~A~~~~~vP~i~vI~~~g~~~GGa~vv~~~~~~~~~~~~yAwP~a~~gVm~pEGav~I~fr~e~~~~~~~r~d~~~~el  240 (404)
T d1uyra2         161 VDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEMYADVNARAGVLEPQGMVGIKFRREKLLDTMNRLDDKYREL  240 (404)
T ss_dssp             HHHHHTCCSCEEEEECTTCEEEHHHHHTTCGGGGTTTEEEEEETTCEEESSCHHHHHHHHSCHHHHHHHHHHC-------
T ss_pred             HHHHHHCCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHEECCHHHHCCHHHHHHHHHHH
T ss_conf             99998548997999957864130234103676677655488878654106786654321033021113265568999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~l~~~~~a~e~~~~l~~~i~~re~~l~p~y~qvA~~Fadlhdt~~Rm~~kG~I~~iv~w~~tR~~~~~~lrr~l~e~~  320 (404)
T d1uyra2         241 RSQLSNKSLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRSSRMVAKGVISKELEWTEARRFFFWRLRRRLNEEY  320 (404)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTTSSHHHHHHHTCSSEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             98725755587789999999999999862789999999998508687898568466122878859999999999874999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (404)
T d1uyra2         321 LIKRLSHQVGEASRLEKIARIRSWYPASVDHEDDRQVATWIEENYKTLDDKLKGLKLESFAQDLAKKIRSDHDNAIDGLS  400 (404)
T ss_dssp             HHHTTTTCCSSCCHHHHHHHHHTTSCTTSCTTCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             99999985777787999999999987346865639999999847799999999998999999999997539088999999


Q ss_pred             ---C
Q ss_conf             ---9
Q 003496          278 ---V  278 (815)
Q Consensus       278 ---~  278 (815)
                         .
T Consensus       401 ~~~~  404 (404)
T d1uyra2         401 EVIK  404 (404)
T ss_dssp             TCCC
T ss_pred             HHHC
T ss_conf             9849

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=100.00  E-value=0  Score=30501.57  Aligned_cols=1  Identities=0%  Similarity=-0.127  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~d~~d~l~~~R~~F~~~~~~iYLd~as~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA   80 (404)
T d1qz9a_           1 TTRNDCLALDAQDSLAPLRQQFALPEGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLA   80 (404)
T ss_dssp             CCHHHHHHHHHTCTTGGGGGGBCCCTTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHCCCCCHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             96699997567781899985189999989867851033789999999999998750467565552328999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~llga~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (404)
T d1qz9a_          81 TLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDSPEELPQA  160 (404)
T ss_dssp             TTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESSGGGHHHH
T ss_pred             HHHCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHEEEEECEECCCCCCCHHHHHH
T ss_conf             99689987579956706777777655555420357885799962543347788775422132100010354542668986


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 i~~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~  240 (404)
T d1qz9a_         161 IDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWV  240 (404)
T ss_dssp             CSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEE
T ss_pred             CCCCCEEEEEECCCCCCCCEECHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECHHHCCCCCCEEEEEEE
T ss_conf             69884599984245555616238997310324443326885123321233444454509998050214668856999874


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  320 (404)
T d1qz9a_         241 SPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELV  320 (404)
T ss_dssp             CTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             36556307863223577555522234544335604554320010467888777888877668999999987678999988


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~~~~~~i~~p~~~~~r~~~vsf~~~~~~~v~~~L~~~gi~~~~r~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~  400 (404)
T d1qz9a_         321 EQRCAAHELTLVTPREHAKRGSHVSFEHPEGYAVIQALIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQILGEILDR  400 (404)
T ss_dssp             HHHHTTSCCEECSCSSGGGBCSEEEEECTTHHHHHHHHHTTTEECEEETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCCEEEECCCCCCCEEEEEEEECCCHHHHHHHHHHCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             75435898799788883120139999169999999999888989862599869997997789999999999999999971


Q ss_pred             ---C
Q ss_conf             ---9
Q 003496          278 ---V  278 (815)
Q Consensus       278 ---~  278 (815)
                         .
T Consensus       401 ~~~~  404 (404)
T d1qz9a_         401 KTWA  404 (404)
T ss_dssp             TTTC
T ss_pred             CCCC
T ss_conf             7889

>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida [TaxId: 303]}

class: All alpha proteins
fold: Cytochrome P450
superfamily: Cytochrome P450
family: Cytochrome P450
domain: Cytochrome P450-CAM
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=0  Score=30501.26  Aligned_cols=1  Identities=100%  Similarity=0.636  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 l~p~p~~~p~~~~~d~d~~~p~~~~~dp~~~~~~lr~~~~~~~~~~~~~~g~w~vtr~~dv~~vl~d~~~Fss~~~~~~~   80 (404)
T d1re9a_           1 LAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRHFSSECPFIPR   80 (404)
T ss_dssp             CCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHGGGGSTTSCSEEEECGGGCEEEECSHHHHHHHHHCTTTEETTSCSSSH
T ss_pred             CCCCCCCCCHHHCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCEEEECCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             98877999832266789898577632818999999960899779856999989976999999997699757689987764


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~D~p~H~~~R~~l~~~Fs~~~l~~~~~~i~~~~~~ll~~~~~~g~~D~v~~~a~~l~~~vi~~llG~p  160 (404)
T d1re9a_          81 EAGEAYDFIPTSMDPPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFMLLAGLP  160 (404)
T ss_dssp             HHHHHCCCTTTTCCTTHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGGGSEEEHHHHTTTHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHC
T ss_conf             44333456654578889999997526757843189998999999999974421467346420344577888799987420


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~li~~~r~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~l~~ag~  240 (404)
T d1re9a_         161 EEDIPHLKYLTDQMTRPDGSMTFAEAKEALYDYLIPIIEQRRQKPGTDAISIVANGQVNGRPITSDEAKRMCGLLLVGGL  240 (404)
T ss_dssp             GGGHHHHHHHHHHHHSCCSSSCHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHTCEETTEECCHHHHHHHHHHHHHTTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             02102321335655431226899999999999999998887506654402333100233345758899999999998763


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 eTt~~~l~~~~~~L~~~p~~~~~l~~~~~~~~~~v~E~lR~~~p~~~~r~~~~~~~~~G~~ip~G~~V~~~~~aanrDp~  320 (404)
T d1re9a_         241 DTVVNFLSFSMEFLAKSPEHRQELIERPERIPAACEELLRRFSLVADGRILTSDYEFHGVQLKKGDQILLPQMLSGLDER  320 (404)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHCGGGHHHHHHHHHHHTCCBCCEEEESSCEEETTEEECTTCEEECCHHHHTTCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf             34678899999997550588999876410111123342234553333433223200388667640233243675367854


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~f~dPd~F~p~R~~~~hl~FG~G~h~C~G~~lA~~e~~~~l~~ll~r~p~~~l~~~~~~~~~~~~~~g~~~lpv~~~P~~  400 (404)
T d1re9a_         321 ENACPMHVDFSRQKVSHTTFGHGSHLCLGQHLARREIIVTLKEWLTRIPDFSIAPGAQIQHKSGIVSGVQALPLVWDPAT  400 (404)
T ss_dssp             TSSSTTSCCTTCSSCCCCTTCCGGGCCTTHHHHHHHHHHHHHHHHHHCCCCEECTTCCCCEECSSBCEESCCEEECCGGG
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEECCCCCCCCCEEEEEEEEECC
T ss_conf             47993331889999998877998616801999999999999999997898589999964315887258543468992068


Q ss_pred             ---C
Q ss_conf             ---9
Q 003496          278 ---V  278 (815)
Q Consensus       278 ---~  278 (815)
                         -
T Consensus       401 ~~~~  404 (404)
T d1re9a_         401 TKAV  404 (404)
T ss_dssp             CCCC
T ss_pred             CCCC
T ss_conf             6869

>d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: AmyC N-terminal domain-like
domain: Alpha-amylase AmyC
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=0  Score=30500.62  Aligned_cols=1  Identities=0%  Similarity=-0.262  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~k~~l~lvlH~HqP~~~~~~~~~~~ee~W~~~~~~~~Y~pll~~l~~~~~~r~t~n~sP~LleQL~D~~~~~~f~~~~~~   80 (404)
T d2b5dx2           1 MRGKILIFLHAHLPYVHHPEYDHFLEERWLFEAITETYIPLLMMFDEIEDFRLTMSITPPLMEMLSSRDLQEKYERHMEK   80 (404)
T ss_dssp             CCEEEEEEEEECCCCCCCTTCSSCTTHHHHHHHHHHTHHHHHHHHHHSSCCCEEEEECHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHCHHHHHHHHHHHHH
T ss_conf             93489999945888644899886443669999999988999999985868619998779999987586756446999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~r~L~~~G~vEll~~~y~Hpilpll~~~~e~~~  160 (404)
T d2b5dx2          81 LIELANKEVERTKKEHPLKHKMAKFYREHFEKILNVFRSYDGNILEGFKKYQETGKLEIVTCNATHAFLPLYQMYPEVVN  160 (404)
T ss_dssp             HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHHHTSEEEEEECTTCBCGGGGTTCHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCCHHHHH
T ss_conf             99986666552234204788999999999999999999966478999999997698048723520123455049869999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~Qi~~g~~~~~~~fG~~P~G~W~pE~a~~~~l~~~l~~~Gi~~~~~d~~~l~~~~~~~~~~~~~p~~~~~~~~~~~rd~~  240 (404)
T d2b5dx2         161 AQITVGVKNYEKHMKKHPRGIWLAECGYYQGLDLYLAQNNVEYFFVDSHAFWFADEQPRYGVYRPIMTPSGVFAFARDPE  240 (404)
T ss_dssp             HHHHHHHHHHHHHHSSCCSEEECGGGCBCTTHHHHHHHTTCCEEEECTHHHHTSSSCCTTGGGSCEECTTSCEEEECCGG
T ss_pred             HHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf             99999999999986999988978753558769999997798699968335523577887666576215886157742510


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~vws~~~G~pg~~~~~~~~~~~~~~~~~~~i~~~frd~~ls~~igf~y~~~~~~~~~~~~k~~Yd~~~A~~~a~~~a  320 (404)
T d2b5dx2         241 SSEQVWSAAVGYPGDPRYREFYRDIGFDREMEYIKDYIDPSGVRINTGIKYHRITSKSLDASQKEYYDIDLAMEAVEEHA  320 (404)
T ss_dssp             GCGGGGCTTTSGGGCTTSBCTTCCHHHHSCHHHHGGGSCTTSCCCCCSCCCBBCCSSCSCGGGCCBCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             01235414568878842121024533467776135764477632011402303566446643234479899999999989


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~f~~~~~~~~~~~~~~~~~~~vv~i~~DgE~fGh~w~eG~~fL~~l~~~l~~~~~i~~~T~se~l~~~~~~~~~~l~~g  400 (404)
T d2b5dx2         321 RDFLHKKESQARRLMDIMGVEPVIVAPFDAELFGHWWFEGVFFLKRFFELVNESKDLKLVTASEVIDTLEEVQIATPADS  400 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCEEEEEEEGGGBTTTBTTHHHHHHHHHHHHHHCSSEEECCHHHHHHHCCCCCBCCCCSB
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHCCCCCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHCCCCCCCCCCCC
T ss_conf             99999999999876523689987999755132066713379999999999863898389769999986899772230799


Q ss_pred             ---C
Q ss_conf             ---9
Q 003496          278 ---V  278 (815)
Q Consensus       278 ---~  278 (815)
                         +
T Consensus       401 SWg~  404 (404)
T d2b5dx2         401 SWGA  404 (404)
T ss_dssp             CSCC
T ss_pred             CCCC
T ss_conf             9998

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=30500.09  Aligned_cols=1  Identities=0%  Similarity=-0.625  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~P~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~~~   80 (404)
T d2byla1           1 GPPTSDDIFEREYKYGAHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAF   80 (404)
T ss_dssp             CCCCHHHHHHHHHHHBCSCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTE
T ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCEEEECCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf             98967999999877546788987844898454999979879999926889988553798999999999996478755643


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~  160 (404)
T d2byla1          81 YNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYD  160 (404)
T ss_dssp             EESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHT
T ss_pred             CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCC
T ss_conf             31049999876543011332220147666403589999987640366312311223357884556510340577865455


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~p~~~~~~~~p~~d~~~l~~~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~  240 (404)
T d2byla1         161 GFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRW  240 (404)
T ss_dssp             TSCSCCTTEEEECTTCHHHHHHHHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred             CCCCCCCCEEEECCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCC
T ss_conf             77888887157346679999985579986999978843888971499999999999998628079960465364635533


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~a~~~~gv~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~g~~  320 (404)
T d2byla1         241 LAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGII  320 (404)
T ss_dssp             SGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             CHHHHCCCCCCEEEECCHHHCCCCCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             33654699988999774646898662104521023312578887859886999999999999999854703566676688


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 l~~~l~~l~~~~i~~vRg~Gl~~~i~~~~~~~~~~~~~~~~l~~~Gvl~~~~~~~~i~l~PpL~it~~~id~~~~~l~~a  400 (404)
T d2byla1         321 LRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKT  400 (404)
T ss_dssp             HHHHHHTSCTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECEEEETTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCEEEEECCCEEEEEEECCCCHHHHHHHHHHHHCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             99999960136631356246289999826886129999999996991992489998999799678999999999999999


Q ss_pred             ---C
Q ss_conf             ---9
Q 003496          278 ---V  278 (815)
Q Consensus       278 ---~  278 (815)
                         -
T Consensus       401 l~~f  404 (404)
T d2byla1         401 ILSF  404 (404)
T ss_dssp             HHTC
T ss_pred             HHCC
T ss_conf             9729

>d1h12a_ a.102.1.2 (A:) Endo-1,4-beta-xylanase {Pseudoalteromonas haloplanktis [TaxId: 228]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Endo-1,4-beta-xylanase
species: Pseudoalteromonas haloplanktis [TaxId: 228]

Probab=100.00  E-value=0  Score=30496.58  Aligned_cols=1  Identities=0%  Similarity=0.204  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~a~~~~~y~n~~~~~~~~~i~~k~~~~~~~~f~~~~~~~~y~~~~~~~~~~~~~~~~i~d~~~~dv~SEGq   80 (404)
T d1h12a_           1 AFNNNPSSVGAYSSGTYRNLAQEMGKTNIQQKVNSTFDNMFGYNNTQQLYYPYTENGVYKAHYIKAINPDEGDDIRTEGQ   80 (404)
T ss_dssp             CCCSSCCSSCHHHHCCCCCHHHHTTCCSHHHHHHHHHHHHSSSCSSSCCEEEEEETTEEEEEEEEECCTTTCCEEEHHHH
T ss_pred             CCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             98888787761333755478898619999999999999971789884489971687665200012255479986654378


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 gYGMl~Av~~ndr~~FD~Lw~Wt~~~l~~~d~~~~~~~~gL~aW~~~~~~~~~~~v~d~nsAtDGDl~iA~ALl~A~~~W  160 (404)
T d1h12a_          81 SWGMTAAVMLNKQEEFDNLWRFAKAYQKNPDNHPDAKKQGVYAWKLKLNQNGFVYKVDEGPAPDGEEYFAFALLNASARW  160 (404)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHTBCCTTCSSGGGTTCBEEEEEECTTSCEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             89999999809999999999999998604555444455677613345888987556889999768999999999999861


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 g~~~~~~Y~~eA~~il~~i~~~~~~~~~~~l~P~~~~f~nPSY~~P~~~~~fa~~~~~~~~~~~W~~v~~~s~~ll~~~~  240 (404)
T d1h12a_         161 GNSGEFNYYNDAITMLNTIKNKLMENQIIRFSPYIDNLTDPSYHIPAFYDYFANNVTNQADKNYWRQVATKSRTLLKNHF  240 (404)
T ss_dssp             CSSSSCCHHHHHHHHHHHHHHHSEETTEECSCTTCSSCBCGGGCCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             89407799999999999888740578852556875578686325489999999860577540889999999999999850


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~s~~p~~gL~~d~~~~dg~~~~~~~~~~~~~~~~~~~yDA~Rvpl~~a~dy~w~~~d~~~~~~~~~~~~f~~~~~~~~  320 (404)
T d1h12a_         241 TKVSGSPHWNLPTFLSRLDGSPVIGYIFNGQANPGQWYEFDAWRVIMNVGLDAHLMGAQAWHKSAVNKALGFLSYAKTNN  320 (404)
T ss_dssp             HHHSSTTTTTCCCSCBCTTSCBCCSCCSTTCCSCTTEECTTTHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             13467887789957872489736676667676778865502888778998887505888455799999999999875026


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~~~~~~~~G~~~~~~~~~g~~a~~a~a~~a~~~~~~a~~~~~~~~~~~~~~~~~~YY~~~L~L~~ll~lsG~~r~~  400 (404)
T d1h12a_         321 SKNCYEQVYSYGGAQNRGCAGEGQKAANAVALLASTNAGQANEFFNEFWSLSQPTGDYRYYNGSLYMLAMLHVSGNFKFY  400 (404)
T ss_dssp             TTSSCBSCEETTEECSSCBCCHHHHHHHHHHGGGCCCHHHHHHHHHHHHTCCCCCSTTHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             CCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf             88877631316896478888889999999999864793789999999970357888888789999999999963984772


Q ss_pred             ---C
Q ss_conf             ---9
Q 003496          278 ---V  278 (815)
Q Consensus       278 ---~  278 (815)
                         -
T Consensus       401 ~~~~  404 (404)
T d1h12a_         401 NNTF  404 (404)
T ss_dssp             CCC-
T ss_pred             CCCC
T ss_conf             4579

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=100.00  E-value=0  Score=30423.36  Aligned_cols=1  Identities=100%  Similarity=0.769  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~s~ire~~~~~~~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~ai   80 (403)
T d1wsta1           1 INFDSFFSEKAMLMKASEVRELLKLVETSDVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLAL   80 (403)
T ss_dssp             CCGGGGCCHHHHHCCCHHHHHHHHHHTSSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf             98789999998508981899999972899958899978895206989999999999974760014889986779999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 a~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~  160 (403)
T d1wsta1          81 ARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVDLLEEK  160 (403)
T ss_dssp             HHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
T ss_conf             99999984899876773642221178899999986268755567886303567776404540267523667743112122


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S  240 (403)
T d1wsta1         161 LEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGT  240 (403)
T ss_dssp             HHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEE
T ss_pred             CHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCHHHEECCCCCCCCCCCCCCCCCEEEECC
T ss_conf             00011101343212322466898786399999999998887449265345021212347887874345677770799845


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~SK~~~~G~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~  320 (403)
T d1wsta1         241 FSKILAPGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPE  320 (403)
T ss_dssp             STTTTCGGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred             CCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             55133685663444456578899999876402345530145677654114430467889999888999999999864668


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~~p~gg~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~l~~al~rl~~~l~~~~  400 (403)
T d1wsta1         321 GVEWTKPEGGMFVRVTLPEGIDTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIKEEM  400 (403)
T ss_dssp             TCEECCCSBSSEEEEECCTTCCTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEECCCCEEEEEEECCCCCCHHHHHHHHHHCCEEEEECHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             73780788146999989999999999999997897999336636899989979999567999999999999999999998


Q ss_pred             --C
Q ss_conf             --9
Q 003496          278 --V  278 (815)
Q Consensus       278 --~  278 (815)
                        -
T Consensus       401 k~~  403 (403)
T d1wsta1         401 KRV  403 (403)
T ss_dssp             HHC
T ss_pred             HCC
T ss_conf             449

>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis orientalis [TaxId: 31958]}

class: All alpha proteins
fold: Cytochrome P450
superfamily: Cytochrome P450
family: Cytochrome P450
domain: p450 monoxygenase OxyC
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=100.00  E-value=0  Score=30422.75  Aligned_cols=1  Identities=0%  Similarity=-1.922  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~p~~~~~~~~~dP~~~~~~lR~~gPv~ri~~~~~~~~g~~~~w~vt~~~~vr~vl~d~~~fss~~~~~~~   80 (403)
T d1ueda_           1 DIDQVAPLLREPANFQLRTNCDPHEDNFGLRAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHEHFTTRPQFTQS   80 (403)
T ss_dssp             CCCSCCCEEECCTTTTCEETTEECHHHHHHHTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCSSEECCCCC---
T ss_pred             CHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             93234767688344023117997699999995399798516776435888489979999999997598646488665644


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~l~~~Dg~~h~~~Rr~l~~~Fs~~~l~~~~~~i~~~~~~ll~~l~~~g~~~Dl~~~~~~~~~~~~~~~  160 (403)
T d1ueda_          81 KSGAHVEAQFVGQISTYDPPEHTRLRKMLTPEFTVRRIRRMEPAIQSLIDDRLDLLEAEGPSADLQGLFADPVGAHALCE  160 (403)
T ss_dssp             ------CGGGTTCGGGCCTTHHHHHHHHHGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEHHHHTHHHHHHHHHHH
T ss_pred             CCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             55442202216764157815799999998686597999876179999999999874124875203566654456666677


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rr~~~~~~~~~~~~~~~~~~ls~~~l~~~~~~~l  240 (403)
T d1ueda_         161 LLGIPRDDQREFVRRIRRNADLSRGLKARAADSAAFNRYLDNLLARQRADPDDGLLGMIVRDHGDNVTDEELKGLCTALI  240 (403)
T ss_dssp             HHTCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             73260333456655554302301567888877777899999999999862133115555422366466888877788887


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~aG~dTt~~~l~~~l~~L~~~p~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~R~~~~d~~~~G~~ip~G~~V~~~~~~  320 (403)
T d1ueda_         241 LGGVETVAGMIGFGVLALLDNPGQIELLFESPEKAERVVNELVRYLSPVQAPNPRLAIKDVVIDGQLIKAGDYVLCSILM  320 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSGGGTTHHHHCHHHHHHHHHHHHHHHCSSCSCSCEEESSCEEETTEEECTTCEEEECHHH
T ss_pred             HCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEECCHHC
T ss_conf             40104678999999999862320101122202442212333202223344322010134645589743333210001000


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~rdp~~f~dP~~F~PeR~~~~~lpFG~G~r~CiG~~lA~~el~~~l~~Ll~~f~~~~l~~~~~~~~~~~~~~~~~~~lp  400 (403)
T d1ueda_         321 ANRDEALTPDPDVLDANRAAVSDVGFGHGIHYCVGAALARSMLRMAYQTLWRRFPGLRLAVPIEEVKYRSAFVDCPDQVP  400 (403)
T ss_dssp             HTTCTTTSSSTTSCCTTSCCCCCCTTCCSTTSCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCCBCCSSSCCBSCCE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCEECCEEEE
T ss_conf             25783227994243889999999979998846918999999999999999996797788988776544477510764656


Q ss_pred             --C
Q ss_conf             --9
Q 003496          278 --V  278 (815)
Q Consensus       278 --~  278 (815)
                        -
T Consensus       401 v~f  403 (403)
T d1ueda_         401 VTW  403 (403)
T ss_dssp             EEC
T ss_pred             EEC
T ss_conf             569

>d1xksa_ b.69.14.1 (A:) Nuclear pore complex protein Nup133 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nuclear pore complex protein Nup133
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=30422.61  Aligned_cols=1  Identities=0%  Similarity=-1.623  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~ve~~g~~LPv~V~EaLt~a~~~~~~s~~~s~~G~awvv~g~~l~VW~y~~s~~~~~~~C~~L~LP~sdl~~~a~   80 (403)
T d1xksa_           1 ESVNYDVKTFGSSLPVKVMEALTLAEVDDQLTINIDEGGWACLVCKEKLIIWKIALSPITKLSVCKELQLPPSDFHWSAD   80 (403)
T ss_dssp             CCSSEEEEECSSCCCHHHHHHHHHCCTTSCEEEEECTTSEEEEEETTEEEEEECCSSCCGGGCCEEEEECCCCSSCCCGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf             97542676778987688998862057887447999899679999799999971578887787521797189645455676


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 Lv~v~~~~~~~~~~~~~~~gvi~vs~tG~VryW~sI~~~~s~~e~~i~l~~~E~~~~l~~~e~~g~ilatstg~l~l~~~  160 (403)
T d1xksa_          81 LVALSYSSPSGEAHSTQAVAVMVATREGSIRYWPSLAGEDTYTEAFVDSGGDKTYSFLTAVQGGSFILSSSGSQLIRLIP  160 (403)
T ss_dssp             GEEEEECC-------CTTEEEEEECTTCEEEEESCTTCTTCCEEEECC----CCEEEEEEETTTEEEEEETTCCEEEEEE
T ss_pred             EEEECCCCCCCCCCCCCCCEEEEECCCCEEEECHHCCCCCCCCEEEECCCCCEEEEEEEECCCCCEEEEECCEEEEEEEC
T ss_conf             56761367767667887657999979921898710255766423431368966899888507842999947514999923


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~l~~~~L~~~~g~l~Gi~~~~sSl~~~~~~~~~~~~~s~~~~~~~~~v~~ls~~~lq~W~l~~~~e~~~~~~di~~  240 (403)
T d1xksa_         161 ESSGKIHQHILPQGQGMLSGIGRKVSSLFGILSPSSDLTLSSVLWDRERSSFYSLTSSNISKWELDDSSEKHAYSWDINR  240 (403)
T ss_dssp             CTTSCEEEEECTTCCCC------------------CCCCEEEEEEETTTTEEEEEESSEEEEEEECSSCEEEEEEEEHHH
T ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCHHEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEHHHHH
T ss_conf             78982899993588754555334542002124775434211133455314999977995478980389861567513789


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~i~e~~~~~i~~~~~~~~~~~~~i~~~~LD~~~~~~g~~iL~~~~~~~~~~~~~yy~L~ti~~~~~~~~~~~~~~l~~~~  320 (403)
T d1xksa_         241 ALKENITDAIWGSESNYEAIKEGVNIRYLDLKQNCDGLVILAAAWHSADNPCLIYYSLITIEDNGCQMSDAVTVEVTQYN  320 (403)
T ss_dssp             HHHHHHHHHHHTTSTTHHHHHTTCEEEEEEEEEETTEEEEEEEEECTTSSSCBEEEEEEEECCBTTBCCSCEEEEECSCC
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCEEEEEEEEEECCCCCEEEEEEEEEEEEC
T ss_conf             99999998752023556565444305998875848976999999732668870799999998278713788999867767


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~~~~~~~rl~vp~p~~~~ayv~~~~~V~~~~~~~~~~~~~~d~I~F~~~~d~il~~~~~~~~pl~fs~~~Glv~it  400 (403)
T d1xksa_         321 PPFQSEDLILCQLTVPNFSNQTAYLYNESAVYVCSTGTGKFSLPQEKIVFNAQGDSVLGAGACGGVPIIFSRNSGLVSIT  400 (403)
T ss_dssp             CBCCCGGGCCCEEECCCSSSSEEEEECSSEEEEEECTTCTTCCCCEEEECCGGGCCEEEEEEETTEEEEEETTTEEEEEE
T ss_pred             CCCCCCCCCCCEEEECCCCCCEEEEEECCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEECCEEEEEEECCEEEEEE
T ss_conf             85674434760599658998389999099899995789989984417888454677885121578769999234189995


Q ss_pred             --C
Q ss_conf             --9
Q 003496          278 --V  278 (815)
Q Consensus       278 --~  278 (815)
                        .
T Consensus       401 ~~~  403 (403)
T d1xksa_         401 SRE  403 (403)
T ss_dssp             ECC
T ss_pred             CCC
T ss_conf             799

>d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Animal alpha-amylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=0  Score=30420.74  Aligned_cols=1  Identities=0%  Similarity=-2.088  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~p~~~~g~~~i~~~f~w~~~~i~~e~~~yL~~lG~taIwl~P~~e~~~~~~~~~~~y~gY~~~dY~v~~~~Gt~~dfk   80 (403)
T d1hx0a2           1 EYAPQTQSGRTSIVHLFEWRWVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFR   80 (403)
T ss_dssp             CCSCCCCTTCCEEEEETTCCHHHHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCSCSCBTTBCHHHHH
T ss_pred             CCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHH
T ss_conf             98998889972589700076899999999999981998799496815766788999876003687771489999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~Lv~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (403)
T d1hx0a2          81 DMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDC  160 (403)
T ss_dssp             HHHHHHHHTTCEEEEEECCSEEEETTCCCBSCBSSCCCBBGGGTBBTTTTBCGGGBCTTTCCSTTSBCCCTTCHHHHHHS
T ss_pred             HHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
T ss_conf             99999986699799997124466655321345666764543334577788887667887656788874655771002331


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~l~~~pDLn~~np~Vr~~~~~~l~~~~~~GvdGfR~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~  240 (403)
T d1hx0a2         161 QLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRIDASKHMWPGDIKAVLDKLHNLNTNWFPAGSRPFIFQEVIDLGGE  240 (403)
T ss_dssp             BGGGEEEBCTTSHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCHHHHHHHHTTCCCCCTTTSCTTCCCEEEECCCCCSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCC
T ss_conf             23445864679999999999999999873977653232321678899999999875073200156775278877516830


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Fl~NHD~~R~~~~~~~~~~~~~~~~~  320 (403)
T d1hx0a2         241 AIKSSEYFGNGRVTEFKYGAKLGTVVRKWSGEKMSYLKNWGEGWGFMPSDRALVFVDNHDNQRGHGAGGSSILTFWDARL  320 (403)
T ss_dssp             SSCGGGGTTTSEEECHHHHHHHHHHHTTCTTCCGGGGGGTTGGGTCCCGGGEEECSCCTTGGGTCSSCGGGCCCGGGHHH
T ss_pred             HHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             21022025887102243223245787641620478998750111368845057863467775556678864144456789


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~a~af~lt~p~G~P~iy~gy~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~r~~~i~~m~~frn~  400 (403)
T d1hx0a2         321 YKIAVGFMLAHPYGFTRVMSSYRWARNFVNGEDVNDWIGPPNNNGVIKEVTINADTTCGNDWVCEHRWREIRNMVWFRNV  400 (403)
T ss_dssp             HHHHHHHHHHSCSSEEEEEECBCCCCCEETTEETTTTCCSSEETTEECCCCBCTTSCBCTTBCCGGGSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999987898164676306644544577667778999888874688747767778518777668999999998663


Q ss_pred             --C
Q ss_conf             --9
Q 003496          278 --V  278 (815)
Q Consensus       278 --~  278 (815)
                        .
T Consensus       401 ~~g  403 (403)
T d1hx0a2         401 VDG  403 (403)
T ss_dssp             TTT
T ss_pred             CCC
T ss_conf             679

>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces coelicolor [TaxId: 1902]}

class: All alpha proteins
fold: Cytochrome P450
superfamily: Cytochrome P450
family: Cytochrome P450
domain: Cyp154c1 monooxygenase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=100.00  E-value=0  Score=30420.87  Aligned_cols=1  Identities=0%  Similarity=-0.494  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~lR~~GPv~~~~~~g~~~~~vvt~~~~v~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (403)
T d1gwia_           1 ARIPLDPFVTDLDGESARLRAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPRLVKDINVWGAWRRGEIPADWPLIGLAN   80 (403)
T ss_dssp             CCEECCTTCSCHHHHHHHHHHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTTEECCGGGCHHHHTTCSCTTCTTHHHHS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             98888987669559999998149978988479960999679999999966976133765333222466765443200003


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~g~~ll~~dG~~h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~~d~~~~~a~~~~~~~~~~~~g~~~~~~  160 (403)
T d1gwia_          81 PGRSMLTVDGAEHRRLRTLVAQALTVRRVEHMRGRITELTDRLLDELPADGGVVDLKAAFAYPLPMYVVADLMGIEEARL  160 (403)
T ss_dssp             CCSSGGGCCHHHHHHHHHHHTTTSCHHHHHTTHHHHHHHHHHHHHTSCCSCCCEEHHHHTTTHHHHHHHHHHHTCCGGGH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf             68862158857899999997640443313222447989899875321035844431034433333233221047641000


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ag~~tt  240 (403)
T d1gwia_         161 PRLKVLFEKFFSTQTPPEEVVATLTELASIMTDTVAAKRAAPGDDLTSALIQASENGDHLTDAEIVSTLQLMVAAGHETT  240 (403)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHCCBTTBCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCH
T ss_conf             00022233222222048999999999987689999987427642222111112123320123358999999987064210


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~l~~~~~~l~~~p~~~~~l~~~~~~l~~~i~E~lRl~pp~~~~~~r~~~~d~~~~g~~ip~G~~V~~~~~~~~rd~~~  320 (403)
T d1gwia_         241 ISLIVNAVVNLSTHPEQRALVLSGEAEWSAVVEETLRFSTPTSHVLIRFAAEDVPVGDRVIPAGDALIVSYGALGRDERA  320 (403)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHTTSSCHHHHHHHHHHHSCSBCCEEEEEESSCEEETTEEECTTCEEEECHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHCCCCCCCCCCCCCCCEEECCEEECCCCEEEEECCCCCCCHHH
T ss_conf             11445555433421589999997620100001220221275200024344687670435654632353100245677654


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~pdP~~F~PeR~~~~~~lpFG~G~r~C~G~~lA~~e~~~~l~~ll~~f~~~~l~~p~~~~~~~~~~~~~~~~~lpv~~~  400 (403)
T d1gwia_         321 HGPTADRFDLTRTSGNRHISFGHGPHVCPGAALSRMEAGVALPALYARFPHLDLAVPAAELRNKPVVTQNDLFELPVRLA  400 (403)
T ss_dssp             HCGGGGSCCTTCCCSSCCCTTCCSTTCCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCCBCSCTTBCCBSCCEEESS
T ss_pred             CCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCCCCCCCCEEEEEE
T ss_conf             09955434878899998376688872680199999999999999999679788888834464688655579876479995


Q ss_pred             --C
Q ss_conf             --9
Q 003496          278 --V  278 (815)
Q Consensus       278 --~  278 (815)
                        .
T Consensus       401 ~~~  403 (403)
T d1gwia_         401 HHH  403 (403)
T ss_dssp             CC-
T ss_pred             CCC
T ss_conf             079

>d3b55a1 c.150.1.3 (A:40-442) Succinoglycan biosynthesis protein BC3120 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: EreA/ChaN-like
superfamily: EreA/ChaN-like
family: EreA-like
domain: Succinoglycan biosynthesis protein BC3120
species: Bacillus cereus [TaxId: 1396]

Probab=100.00  E-value=0  Score=30424.99  Aligned_cols=1  Identities=0%  Similarity=-1.257  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~~~~wi~~~a~pL~~~~p~~~~~Dl~~L~~~v~dariV~LGEatHGt~Ef~~~r~~l~r~Lvee~Gf~~va~E~d~~~~   80 (403)
T d3b55a1           1 NQIAKWLEAHAKPLKTTNPTASLNDLKPLKNMVGSASIVGLGEATHGAHEVFTMKHRIVKYLVSEKGFTNLVLEEGWDRA   80 (403)
T ss_dssp             HHHHHHHHHHCEEECCCCTTSCSGGGTTHHHHHTTCSEEEEEESCTTBHHHHHHHHHHHHHHHHHSCCCEEEEEEEHHHH
T ss_pred             CHHHHHHHHHCEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf             95899999846718888999984779999987479739997267656079999999999999997699889994795889


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~vn~yV~~g~g~~~~~~~~~w~~~e~~~li~WmR~yN~~~~~~~~v~f~G~D~~~~~~s~~~~v~~yl~~~~p~~~~~~  160 (403)
T d3b55a1          81 LELDRYVLTGKGNPSQHLTPVFKTKEMLDLLDWIRQYNANPKHKSKVRVIGMDIQSVNENVYNNIIEYIKANNSKLLPRV  160 (403)
T ss_dssp             HHHHHHHHHSCSCGGGTSCGGGCBHHHHHHHHHHHHHHHCTTCSCCCEEEEEECSCCCHHHHHHHHHHHHHHHGGGTHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCHHHHHHH
T ss_conf             99988875488887787676435288999999999984458877842799854565205578999999986198889999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~  240 (403)
T d3b55a1         161 EEKIKGLIPVTKDMNTFESLTKEEKEKYVLDAKTISALLEENKSYLNGKSKEFAWIKQNARIIEQFTTMLATPPDKPADF  240 (403)
T ss_dssp             HHHHHHHGGGSSSHHHHHTSCHHHHHHHHHHHHHHHHHHHHTGGGGTTTSHHHHHHHHHHHHHHHHHHHTTCCTTCTTHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             99874123333465667764155578899999999999998476541274679999999999999999998456774667


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~RD~~Maenl~wl~~~~~kiivwaHN~Hi~~~~~~~~~~~~~~G~~L~e~~G~~y~~IG~~~~~G~v~a~~~~~~~~~  320 (403)
T d3b55a1         241 YLKHDIAMYENAKWTEEHLGKTIVWGHNGHVSKTNMLSFIYPKVAGQHLAEYYGKRYVSIGTSVYEGQYNVKNSDGEFGP  320 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSEEEEEEHHHHSSSCSCTTTCSSCHHHHHHHHHGGGEEEEEEEEEEEEEEEECTTSCEEE
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCEEECCCCCCCCCC
T ss_conf             77899999999999870689889995705425677554557554889999884874499999734640512567788663


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~v~~~~~~S~E~~l~~~~~~~~~ldlr~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~fDali~i~~~tP~  400 (403)
T d3b55a1         321 YGTLKSDDPNSYNYIFGQVKKDQFFIDLRKANGVTKTWLNEQHPIFAGITTEGPDIPKTVDISLGKAFDILVQIQKVSPS  400 (403)
T ss_dssp             EEECCCCCTTSHHHHHHTSSCSEEEEEGGGCCHHHHHHHTSCEEEECCCSBCBTTBCSEEEECHHHHCSEEEEEEEECBC
T ss_pred             EEECCCCCCCCHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHCCEEEEECCCCCC
T ss_conf             02227999988999997369986898764365331557630424045357898666754058859969589996565745


Q ss_pred             --C
Q ss_conf             --9
Q 003496          278 --V  278 (815)
Q Consensus       278 --~  278 (815)
                        .
T Consensus       401 ~~~  403 (403)
T d3b55a1         401 QVH  403 (403)
T ss_dssp             CBC
T ss_pred             CCC
T ss_conf             369

>d2g5da1 b.52.1.4 (A:40-441) Membrane-bound lytic murein transglycosylase A, MLTA {Neisseria gonorrhoeae [TaxId: 485]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: MLTA-like
domain: Membrane-bound lytic murein transglycosylase A, MLTA
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=100.00  E-value=0  Score=30351.61  Aligned_cols=1  Identities=0%  Similarity=-1.624  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 p~~p~~~p~pa~~~~~~~~a~~~~vsf~~LpGW~~dd~~~al~af~~sC~~l~~~~~w~~~C~~a~~~~~~~~~aR~Ffe   80 (402)
T d2g5da1           1 PDRPAGIPDPAGTTVAGGGAVYTVVPHLSMPHWAAQDFAKSLQSFRLGCANLKNRQGWQDVCAQAFQTPIHSFQAKRFFE   80 (402)
T ss_dssp             CCCCCCCCCCTTCEEEETTEEEEECCGGGSTTCTTCCHHHHHHHHHHHHHHHTTSTTCHHHHHHHHTSCSSHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEECCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             98887899997654567764234546888889740139999999999877503246789999999717998099999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~F~p~~v~~~g~~~Gl~TGYYEP~l~gS~~r~~~y~~PlY~~P~DLv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (402)
T d2g5da1          81 RYFTPWQVAGNGSLAGTVTGYYEPVLKGDGRRTERARFPIYGIPDDFISVPLPAGLRGGKNLVRIRQTGKNSGTIDNAGG  160 (402)
T ss_dssp             HHEEEEEEEETTBSCEEEEEEEECEEEEESSCCSSCCEEEEBSCTTCEEEECC--------CEEECCCBTTBCC------
T ss_pred             HHCEEEEEECCCCCCEEEEEEECEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             72789998407987525877403057653366888887734589532225555433322222222334455443334444


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~dl~~~~~~~~~~~~~gR~~~~~~vPY~~R~eI~~g~l~~~~~elaW~~Dpvd~FFLqIQGSGrl~l~dG~~~rvgY  240 (402)
T d2g5da1         161 THTADLSRFPITARTTAIKGRFEGSRFLPYHTRNQINGGALDGKAPILGYAEDPVELFFMHIQGSGRLKTPSGKYIRIGY  240 (402)
T ss_dssp             -EEECTTTSCCCSCCSEEEEEEETTEEEECCCHHHHHTTTTTTSSCEEEEESCHHHHHHHHHHSCEEEECTTSCEEEEEE
T ss_pred             CCCCCCCCCCCCCCCHHHEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCHHHHHHEEECCCEEEEECCCCEEEEEE
T ss_conf             33354112563222101100102785134776999864875677745788378255352665263699937999899986


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ag~NG~pY~sIGr~Li~~G~i~~~~~Smq~Ir~Wl~~nP~~~~ell~~NpsYVFFr~~~~~~~~GP~Ga~gvpLtp~rSi  320 (402)
T d2g5da1         241 ADKNEHPYVSIGRYMADKGYLKLGQTSMQGIKAYMRQNPQRLAEVLGQNPSYIFFRELAGSGGDGPVGALGTPLMGEYAG  320 (402)
T ss_dssp             EEECCCCCCCHHHHHHTTTSSCTTSCSHHHHHHHHHHCGGGHHHHHTTCCCCEEEEEC-----CCCBCTTSSBCCTTSEE
T ss_pred             CCCCCCCCEEHHHHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEE
T ss_conf             36789965108999976698671128999999999979799999997499749988778888899864367756677046


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 AvD~~~iPlG~pv~l~t~~p~~~~~~~rL~iAQDTGgAIkG~~R~D~f~G~G~~Ag~~AG~mk~~G~~~~LlPk~~~p~~  400 (402)
T d2g5da1         321 AIDRHYITLGAPLFVATAHPVTRKALNRLIMAQDTGSAIKGAVRVDYFWGYGDEAGELAGKQKTTGYVWQLLPNGMKPEY  400 (402)
T ss_dssp             EECTTTSCTTCEEEEEEECTTTCSEEEEEEEEEEECTTCCSSSEEEEEEEESHHHHHHHHHCEEEEEEEEEEETTCCCCC
T ss_pred             EECCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHCCCCCEEEEEEECCCCCCCC
T ss_conf             61776257887389974577778850027998515765348861698751888999887452575259999528888677


Q ss_pred             -C
Q ss_conf             -9
Q 003496          278 -V  278 (815)
Q Consensus       278 -~  278 (815)
                       +
T Consensus       401 ~~  402 (402)
T d2g5da1         401 RP  402 (402)
T ss_dssp             CC
T ss_pred             CC
T ss_conf             97

>d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=30350.47  Aligned_cols=1  Identities=0%  Similarity=-1.457  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~gPL~GirVld~~~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~r~~~~~~~~~n~~K~si~ldl~~~~G~~~~~   80 (402)
T d1xk7a1           1 LPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFL   80 (402)
T ss_dssp             CCCCCCSTTTTCEEEEECCSSHHHHHHHHHHHTTCEEEEEECSSSCCGGGGSSSHHHHHTTTCEEEEECTTSHHHHHHHH
T ss_pred             CCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHHHHHHH
T ss_conf             98899969999888883780289999999998299599989999997434588516773899859998693978999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~Lv~~aDv~i~n~rpg~~~~lGl~~~~L~~~nP~lI~~sisgfG~~~~gp~~~~~~~D~~~qA~sG~~~~~G~~~~p~~~  160 (402)
T d1xk7a1          81 KLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPA  160 (402)
T ss_dssp             HHHTTCSEEEEECSSSHHHHTTCCHHHHHHHCTTCEEEEEESSCSSSCTTTTTSCCCHHHHHHHHTSGGGSEETTEECCC
T ss_pred             HHHHHCCCCEEEECCCCCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf             98750587534101222113465421001002443213655565776765467777663212210000101455455433


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~d~~~g~~aa~ailaAL~~r~~TG~Gq~VdvSm~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~y~~~D  240 (402)
T d1xk7a1         161 FPYTADYFSGLTATTAALAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLYKCAD  240 (402)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHTHHHHHHHHTTSCCCCCBBTTBCSSBTTEEEEEETT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf             44322123124431345777640345788665443432201344321111000123332222234677422458553146


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 G~i~i~~~~~~~~~~l~~~~g~~~l~~dp~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~t~~e~~~~l~~~gvp~apV~  320 (402)
T d1xk7a1         241 GYIVMELVGITQIEECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLATHTIAEVKERFAELNIACAKVL  320 (402)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCGGGTTSSSSCTTCCCCBTTTSTTHHHHHHHHHHHHHTSCHHHHHHHHHHTTCEEEECC
T ss_pred             CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEECCC
T ss_conf             76211233222222201121001222322233322221000366778899999999865021145566550795010478


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~e~~~dpq~~~r~~~~~~~~~~~g~~~~p~~p~~fs~t~~~~~~~aP~lGeht~eIL~eLG~s~~eI~~L~~~gvi~~  400 (402)
T d1xk7a1         321 TVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKV  400 (402)
T ss_dssp             CGGGSTTCHHHHHHTCEEEEECTTSCEEEEECCSSCCSSSCCCCCCCCCCTTTTHHHHHHHTTCCHHHHHHHHHTTSEEC
T ss_pred             CHHHHHHCHHHHHHCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCEEC
T ss_conf             99998779898971999988768997667305770158999887899999985499999986999999999998829868


Q ss_pred             -C
Q ss_conf             -9
Q 003496          278 -V  278 (815)
Q Consensus       278 -~  278 (815)
                       .
T Consensus       401 ~~  402 (402)
T d1xk7a1         401 ED  402 (402)
T ss_dssp             CC
T ss_pred             CC
T ss_conf             89

>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=0  Score=30349.97  Aligned_cols=1  Identities=0%  Similarity=-0.427  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~sP~d~ry~~~~~~~ifs~~~~~~~~l~ve~a~a~a~~e~G~ip~~~a~~i~~~~~d~~~i~~~e~~~~hdv~a~~~~l   80 (402)
T d1dofa_           1 HVSPFDWRYGSEEIRRLFTNEAIINAYLEVERALVCALEELGVAERGCCEKVNKASVSADEVYRLERETGHDILSLVLLL   80 (402)
T ss_dssp             CCCGGGTTSSCHHHHTTSSHHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHCCCCTTTC--------CHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             92987656498899987294999999999999999999874989889999998723388999999988589804799998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~vH~G~TsnDi~~ta~~l~~r~~~~~l~~~l~~l~~~L~~~a~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~  160 (402)
T d1dofa_          81 EQKSGCRYVHYGATSNDIIDTAWALLIRRALAAVKEKARAVGDQLASMARKYKTLEMVGRTHGQWAEPITLGFKFANYYY  160 (402)
T ss_dssp             HHHHCCSCTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             65347888502676487661598999986466788899999999999987640211003765256554229988888999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~l~r~~~rl~~~~~~~~~~~gGa~g~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~rd~~~e~~~~L~~~a~~L~kia  240 (402)
T d1dofa_         161 ELYIACRQLALAEEFIRAKIGGAVGTMASWGELGLEVRRRVAERLGLPHHVITTQVAPRESFAVLASALALMAAVFERLA  240 (402)
T ss_dssp             HHHHHHHHHHHHHHHCCBCCCCTTSSCGGGGGGHHHHHHHHHHHTTCCBCSSCSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999875034566552224430445789999887345555235555541001688999888898999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~Di~~~s~~e~ge~~e~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~erd~~~~~~~~~~l~~~~~~~~  320 (402)
T d1dofa_         241 VEIRELSRPEIGEVVEGGGGSSAMPHKANPTASERIVSLARYVRALTHVAFENVALWHERDLTNSANERVWIPEALLALD  320 (402)
T ss_dssp             HHHHHHTSTTTCSEESCC---------CCCHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             99999717753541134675410258878428998724378887888999875124432120245655302532599999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~l~~~~~~l~~l~vn~erm~~~l~~s~~~i~ae~~~~~L~~~gl~~~~Ah~~v~~~~~~a~e~~k~~~e~l~~d~~~l~  400 (402)
T d1dofa_         321 EILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEAYKKAKEVKALTFEYQKWPVERLIEDALSLK  400 (402)
T ss_dssp             HHHHHHHHHHHHCEECHHHHHHHHHHHHHHHCHHHHHHHHHHTTCCHHHHHHHHTTCCCCCCGGGGCCHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHCCCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHCC
T ss_conf             99999999876499989999999985158667999999999869999999999999999999958985999860825147


Q ss_pred             -C
Q ss_conf             -9
Q 003496          278 -V  278 (815)
Q Consensus       278 -~  278 (815)
                       -
T Consensus       401 l~  402 (402)
T d1dofa_         401 LC  402 (402)
T ss_dssp             CC
T ss_pred             CC
T ss_conf             89

>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: N-acylglucosamine (NAG) epimerase
domain: N-acyl-D-glucosamine 2-epimerase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=0  Score=30347.35  Aligned_cols=1  Identities=0%  Similarity=-0.262  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~l~~ilpfW~~~~~D~~~GGf~~~ld~dg~~~~~~k~~~~~~R~l~~fs~a~~~~~~~~~~~~   80 (402)
T d1fp3a_           1 MEKERETLQAWKERVGQELDRVMAFWLEHSHDREHGGFFTCLGRDGRVYDDLKYVWLQGRQVWMYCRLYRKLERFHRPEL   80 (402)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBCTTTSSBCCCBCTTSCBSCCCEEHHHHHHHHHHHHHHHHHCGGGCCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             94168999999999999999999878855807678972143789998579886365549999999999997463489899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~a~~g~~~L~~~~~~d~~~Gg~~~~vd~dG~~~~~~k~~Yd~Af~l~a~a~~~~~tg~~~~~~~a~~~~~~i~~~~~~  160 (402)
T d1fp3a_          81 LDAAKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVRE  160 (402)
T ss_dssp             HHHHHHHHHHHHHHTBSSTTSCCBCSEECTTSCEEECCSSSHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999981883589998898878999967654564120899999899886039989999999999999998421


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~g~~~~~~~~~~~~~g~~~~m~l~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  240 (402)
T d1fp3a_         161 DPSGLGRPQLPGAVASESMAVPMMLLCLVEQLGEEDEELAGRYAQLGHWCARRILQHVQRDGQAVLENVSEDGEELSGCL  240 (402)
T ss_dssp             CGGGGCCCCCTTSCCEEETHHHHHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHTTEETTTTEECSEEETTSCBCCHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf             56888741247875434354179999999997343430579999999999998875016541257764314667666834


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~i~pGh~~e~~wLll~a~~~~~~~~~~~~a~~~~~~~~~~~g~d~~~ggl~~~~~~~g~~~~~~~~~~k~~W~qaE~i  320 (402)
T d1fp3a_         241 GRHQNPGHALEAGWFLLRHSSRSGDAKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADGLCPTQLEWAMKLWWPHSEAM  320 (402)
T ss_dssp             HHEECHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTHHHHHHHBCTTTCSBCSCEETTSCCCSSTTTTCEEHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             47278502359999999999873990479999999999999829557899588875378886655441377787899999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~a~l~ly~~tgd~~~l~~a~~l~~~~~~~f~D~~~G~W~~~~~~~g~~~~~~k~~p~~~~YH~~ral~~~~~~l~~~~~~  400 (402)
T d1fp3a_         321 IAFLMGYSESGDPALLRLFYQVAEYTFRQFRDPEYGEWFGYLNREGKVALTIKGGPFKGCFHVPRCLAMCEEMLSALLSR  400 (402)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCTTTSSBCCEECTTSCEEECCSSCSSCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999987049989999999999999986877999766743899989986677888898461899999999999999851


Q ss_pred             -C
Q ss_conf             -9
Q 003496          278 -V  278 (815)
Q Consensus       278 -~  278 (815)
                       .
T Consensus       401 ~~  402 (402)
T d1fp3a_         401 LA  402 (402)
T ss_dssp             HC
T ss_pred             CC
T ss_conf             39

>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora erythraea [TaxId: 1836]}

class: All alpha proteins
fold: Cytochrome P450
superfamily: Cytochrome P450
family: Cytochrome P450
domain: Cytochrome P450-ERYF
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=100.00  E-value=0  Score=30346.96  Aligned_cols=1  Identities=0%  Similarity=-1.257  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~f~~dpy~~y~~lr~~gPv~~~~~~g~~~~vvt~~e~v~~vl~d~~~~s~~~~~~~~~~~~~~~~~~~~~~~   80 (402)
T d1z8oa1           1 TVPDLESDSFHVDWYRTYAELRETAPVTPVRFLGQDAWLVTGYDEAKAALSDLRLSSDPKKKYPGVEVEFPAYLGFPEDV   80 (402)
T ss_dssp             CCCBTTSGGGTSSHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCTTEECCTTCCCTTCCCCCGGGTTCCHHH
T ss_pred             CCCCCCCHHHHHCHHHHHHHHHHCCCEEEEEECCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             98787974566594999999983499789850895389988999999996497534483112565544564223442667


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~l~~~dg~~H~~~R~~l~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  160 (402)
T d1z8oa1          81 RNYFATNMGTSDPPTHTRLRKLVSQEFTVRRVEAMRPRVEQITAELLDEVGDSGVVDIVDRFAHPLPIKVICELLGVDEK  160 (402)
T ss_dssp             HHHHSSSGGGCCTTHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHHHHHTSCSSSEEEHHHHTTTHHHHHHHHHHTTCCGG
T ss_pred             HHHHCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             77741562016577776420212210243205677888899999875203222223333212330344556666300377


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~d~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~aG  240 (402)
T d1z8oa1         161 YRGEFGRWSSEILVMDPERAEQRGQAAREVVNFILDLVERRRTEPGDDLLSALIRVQDDDDGRLSADELTSIALVLLLAG  240 (402)
T ss_dssp             GTTTHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHCEETTTEECCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf             88888888889875065112566788899999999988999728887779999985664288787789888888873064


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~dTt~~~l~~~l~~l~~~P~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~R~~~~d~~~~g~~ip~Gt~v~~~~~~~~~d  320 (402)
T d1z8oa1         241 FEASVSLIGIGTYLLLTHPDQLALVRRDPSALPNAVEEILRYIAPPETTTRFAAEEVEIGGVAIPQYSTVLVANGAANRD  320 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHCGGGHHHHHHHHHHHTCSSCCEEEEESSCEEETTEEECTTCEEEECHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf             54315678888888765058999975013445430155654220244332134567555784134543022334452168


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 p~~f~dP~~F~PeR~~~~~lpFG~G~r~C~G~~lA~~el~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~  400 (402)
T d1z8oa1         321 PKQFPDPHRFDVTRDTRGHLSFGQGIHFCMGRPLAKLEGEVALRALFGRFPALSLGIDADDVVWRRSLLLRGIDHLPVRL  400 (402)
T ss_dssp             TTTSSSTTSCCTTSCCTTCCTTCSSTTCCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCCCCCCSSSCCCSCCEEET
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCCCCCCCCEEEEE
T ss_conf             53278911228899999988989986578139999999999999999967977578887876352787668988557996


Q ss_pred             -C
Q ss_conf             -9
Q 003496          278 -V  278 (815)
Q Consensus       278 -~  278 (815)
                       .
T Consensus       401 ~~  402 (402)
T d1z8oa1         401 DG  402 (402)
T ss_dssp             TC
T ss_pred             CC
T ss_conf             59

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=100.00  E-value=0  Score=30275.30  Aligned_cols=1  Identities=0%  Similarity=-1.391  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~pi~~lv~~ll~~A~~~~ASDIHi~~~~~~~~V~~RidG~L~~~~~~~~~~~~~l~~~~   80 (401)
T d1p9ra_           1 DFFSLAEELPQNEDLLESEDDAPIIKLINAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAPSRKLSSLLVSRV   80 (401)
T ss_dssp             CHHHHHHC-------------CHHHHHHHHHHHHHHHHTCSEEEEEEETTEEEEEEEETTEEEEEECCCGGGHHHHHHHH
T ss_pred             CHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCEEEECCCCCCCHHHHHHHHH
T ss_conf             95464312787344654257767999999999999982980599981788846999989998887888855699999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~a~~~~~~~~~~q~g~~~~~~~~~~i~~Rv~~~p~~~g~~~vlRl~~~~~~~~~l~~LG~~~~~~~~l~~l~~~~~Gl  160 (401)
T d1p9ra_          81 KVMAKLDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSHGERVVMRLLDKNATRLDLHSLGMTAHNHDNFRRLIKRPHGI  160 (401)
T ss_dssp             HHHTTCCTTCCSSCEEEEEEC-----CEEEEEEEECCTTSCEEEECCEETTTTCCCGGGSCCCHHHHHHHHHHHTSSSEE
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCE
T ss_conf             98513678887530120022313894488754442202344566543112332001443013577789999998641054


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~~~~~q~~v~~~~~~~~~~~l~~~lR~dPDvi~igEiRd~~  240 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLE  240 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHH
T ss_pred             EEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCHH
T ss_conf             89876787774477999866625787469996267434567887026558767799999999984138889845768759


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ta~~a~~aa~tGhlV~tTlHa~~a~~~~~Rl~~~~~~~~~l~~~l~~vv~QrLv~~lCp~Ck~~~~~~~~~~~~~~~~~~  320 (401)
T d1p9ra_         241 TAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEADKEQRKLFDSKKK  320 (401)
T ss_dssp             HHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHHHHHHEEEEEEEEEEEEECTTTCEEEECCHHHHTTC-----
T ss_pred             HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf             99999999724985899833676676654321002445667777898874205342188867688999999962354545


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~~~~~GC~~C~~~Gy~GR~~v~Evl~~d~~l~~~I~~~~~~~~l~~~~~~g~~tl~~~a~~~v~~G~~s~eEv~R~  400 (401)
T d1p9ra_         321 EPLILYRATGCPKCNHKGYRGRTGIHELLLVDDALQELIHSEAGEQAMEKHIRATTPSIRDDGLDKVRQGITSLEEVMRG  400 (401)
T ss_dssp             CCCEEEECCCCSSSCSSSEEEEEEEEEEEECCHHHHHHHHTTCCHHHHHHHHHTTCCCHHHHHHHHHHTTSSCHHHHHHH
T ss_pred             CCEEEEECCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHC
T ss_conf             66379808996303799888732999998189999999984998999999998099029999999998599989998243


Q ss_pred             C
Q ss_conf             9
Q 003496          278 V  278 (815)
Q Consensus       278 ~  278 (815)
                      +
T Consensus       401 ~  401 (401)
T d1p9ra_         401 S  401 (401)
T ss_dssp             C
T ss_pred             C
T ss_conf             9

>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: UDP-glucosyltransferase GtfB
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=100.00  E-value=0  Score=30273.15  Aligned_cols=1  Identities=0%  Similarity=-0.926  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 mkil~~~~gt~Gh~~P~lala~~L~~~Gh~V~~~~~~~~~~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (401)
T d1iira_           1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCAPPDCAERLAEVGVPHVPVGPSARAPIQRAKPLTAEDVRRFTTEAI   80 (401)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEECCC-------CCSCCCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             97999889872689999999999998799899996830677898769748977850654541035200799999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (401)
T d1iira_          81 ATQFDEIPAAAEGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPSPYYPPPPLGEPSTQDTIDIPAQWERNNQ  160 (401)
T ss_dssp             HHHHHHHHHHTTTCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSSCCCC---------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHH
T ss_conf             99999999976147642774124257888988887535422344565445532356412466542100001135566566


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (401)
T d1iira_         161 SAYQRYGGLLNSHRDAIGLPPVEDIFTFGYTDHPWVAADPVLAPLQPTDLDAVQTGAWILPDERPLSPELAAFLDAGPPP  240 (401)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCCHHHHHHCSSCEECSCTTTSCCCCCSSCCEECCCCCCCCCCCCCHHHHHHHHTSSCC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCE
T ss_conf             77877778888999984476410233210231023235644467777654332236755676555677888763148975


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 i~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~V~hgG~~t~~Eal~~  320 (401)
T d1iira_         241 VYLGFGSLGAPADAVRVAIDAIRAHGRRVILSRGWADLVLPDDGADCFAIGEVNHQVLFGRVAAVIHHGGAGTTHVAARA  320 (401)
T ss_dssp             EEEECC---CCHHHHHHHHHHHHHTTCCEEECTTCTTCCCSSCGGGEEECSSCCHHHHGGGSSEEEECCCHHHHHHHHHH
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHCCEEEECCCCHHHHHHHHH
T ss_conf             99715754665689999999999769807984267764233578978997025879999545899963771699999981


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 GvP~v~~P~~~DQ~~na~~l~~~G~g~~l~~~~~~~~~l~~ai~~~l~~~~~~~a~~~~~~~~~~~~~~aa~~i~~~i~r  400 (401)
T d1iira_         321 GAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATALTPETHARATAVAGTIRTDGAAVAARLLLDAVSR  400 (401)
T ss_dssp             TCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHT
T ss_pred             CCCEEECCCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf             99999806614179999999987988876847899999999999996979999999999998750839999999999846


Q ss_pred             C
Q ss_conf             9
Q 003496          278 V  278 (815)
Q Consensus       278 ~  278 (815)
                      .
T Consensus       401 ~  401 (401)
T d1iira_         401 E  401 (401)
T ss_dssp             C
T ss_pred             C
T ss_conf             9

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=30272.56  Aligned_cols=1  Identities=0%  Similarity=-0.625  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~m~~~~~~~~~~~l~~~~~~g~~r~~~~i~~~~g~~v~~~dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~   80 (401)
T d1fc4a_           1 GSHMRGEFYQQLTNDLETARAEGLFKEERIITSAQQADITVADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMA   80 (401)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCSCSSSEEEBTTSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             96044899999999999999759987513304788884893499889998765402546899999999999998198865


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~sr~~~g~~~~~~~lE~~lA~~~g~e~al~~~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~~d  160 (401)
T d1fc4a_          81 SVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANND  160 (401)
T ss_dssp             SCHHHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECTTC
T ss_pred             CCEEECCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHCCCCCCCCEEEEECCCC
T ss_conf             42131257088999999888761677447734445666789997457886899677643888705122575079975788


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~di  240 (401)
T d1fc4a_         161 MQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDI  240 (401)
T ss_dssp             HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSE
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEHHHHCCCCCCCCCCCCCHHCCCCCCCEE
T ss_conf             47899999985514567159997577789895565057898875428189800210145145799850101268888729


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 i~~tl~Ka~gg~~Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~g  320 (401)
T d1fc4a_         241 ITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAG  320 (401)
T ss_dssp             EEEESSSTTCSSSCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99651430156776111378789999871792665067888788998875431234689999999987899986401358


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~~~~pIv~v~~~~~~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~lg~i  400 (401)
T d1fc4a_         321 FTLAGADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLGVI  400 (401)
T ss_dssp             CCBCCSSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             CCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             76379999879999799999999999999789059758899789998439999787799999999999999999984888


Q ss_pred             C
Q ss_conf             9
Q 003496          278 V  278 (815)
Q Consensus       278 ~  278 (815)
                      .
T Consensus       401 ~  401 (401)
T d1fc4a_         401 A  401 (401)
T ss_dssp             C
T ss_pred             C
T ss_conf             9

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=30272.90  Aligned_cols=1  Identities=0%  Similarity=-1.590  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~t~ts~~q~~~e~~~~~~~~~~~~~~~~~~~~L~r~~H~~y~~~~L~~lp~~~~~lD~~r   80 (401)
T d2h6fb1           1 EPLYSLRPEHARERLQDDSVETVTSIEQAKVEEKIQEVFSSYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYECLDASR   80 (401)
T ss_dssp             CCCGGGSGGGGGGSCCCTTCCCHHHHHHHHHHHHHHHHHHTTCBTTBCCCCCCCHHHHHHHHHHHTTEECGGGGGGTTCH
T ss_pred             CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCC
T ss_conf             97345467664331468898637889999999999999987534037865532599999999999986988760625462


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~l~yw~l~~L~LL~~~~~~~~~~~ii~~l~~~q~~~GGF~g~pg~~~hla~Ty~Al~~L~ilg~~~~~~~idR~~i~~f  160 (401)
T d2h6fb1          81 PWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQY  160 (401)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             99999999999985998538999999999999718999968999987433999999999997177521023339999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 L~slQ~pDGsF~~~~~ge~D~R~~Y~Av~i~~lL~~~~~~~~~~~~~~I~scQ~~dGGfg~~pg~EaHgg~TfCalAaL~  240 (401)
T d2h6fb1         161 LYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALV  240 (401)
T ss_dssp             HHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHH
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             99951888980002367766212699999999958997778999999999806888874578788763539899999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 lL~~~~~~d~~~l~~WL~~RQ~~~eGGF~GR~nKlvD~CYSfW~ga~l~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yiL  320 (401)
T d2h6fb1         241 ILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYIL  320 (401)
T ss_dssp             HHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHH
T ss_pred             HHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             84788645899999999973778778437887887635788899889999999861246631113333437999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~Q~~~GGf~d~Pg~~pD~yHT~y~L~gLSl~~~~~~~~~~~~~~~~~~~~~l~~~~P~~~i~~~~~~~~~~~f~~~p~  400 (401)
T d2h6fb1         321 MCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGAMLHDVVLGVPENALQPTHPVYNIGPDKVIQATTYFLQKPV  400 (401)
T ss_dssp             HHSBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHHEEEETTEEEECCCSSGGGCCCCCCTTTSSCHHHHHHHHHHHHTSCC
T ss_pred             HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             97478999948897899870088899999986577676676643235775346633798615889999999999985899


Q ss_pred             C
Q ss_conf             9
Q 003496          278 V  278 (815)
Q Consensus       278 ~  278 (815)
                      +
T Consensus       401 ~  401 (401)
T d2h6fb1         401 P  401 (401)
T ss_dssp             T
T ss_pred             C
T ss_conf             9

>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: TDP-vancosaminyltransferase GftD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=100.00  E-value=0  Score=30272.29  Aligned_cols=1  Identities=0%  Similarity=-0.959  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 mrIl~~~~gt~Ghv~P~l~lA~~L~~rGh~V~~~t~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (401)
T d1rrva_           1 MRVLLSVCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAEVGVPHVPVGLPQHMMLQEGMPPPPPEEEQRLAAMT   80 (401)
T ss_dssp             CEEEEEEESCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEECSCCGGGCCCTTSCCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             94999889875689999999999998799899997834677898779748976870776421566543378999989999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (401)
T d1rrva_          81 VEMQFDAVPGAAEGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLASPHLPPAYDEPTTPGVTDIRVLWEERAA  160 (401)
T ss_dssp             HHHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSSCCCBCSCCCTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             99999999999844898599982842668999999827974000000000102556423465556532001246788887


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~v  240 (401)
T d1rrva_         161 RFADRYGPTLNRRRAEIGLPPVEDVFGYGHGERPLLAADPVLAPLQPDVDAVQTGAWLLSDERPLPPELEAFLAAGSPPV  240 (401)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCSCHHHHTTCSSCEECSCTTTSCCCSSCCCEECCCCCCCCCCCCCHHHHHHHHSSSCCE
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHCCHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCEE
T ss_conf             77765478999999983785331255430354211011133203577788689788866655459989997522479839


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~I~hgG~~t~~Eal~  320 (401)
T d1rrva_         241 HIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTELVLPDDRDDCFAIDEVNFQALFRRVAAVIHHGSAGTEHVATR  320 (401)
T ss_dssp             EECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTCCCSCCCTTEEEESSCCHHHHGGGSSEEEECCCHHHHHHHHH
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHCCEEEECCCCHHHHHHHH
T ss_conf             99878644578899999999998626974899505443455457898899731481777621248886177248999998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~GvP~l~~P~~~DQ~~na~~v~~~G~g~~l~~~~~~~~~L~~ai~~vl~~~~r~~a~~~~~~~~~~g~~~aa~~ie~~~~  400 (401)
T d1rrva_         321 AGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTVLAPETRARAEAVAGMVLTDGAAAAADLVLAAVG  400 (401)
T ss_dssp             HTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHHTSHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred             HCCCEEEECCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_conf             39998980661208999999998798897574789999999999998497999999999998755179999999999857


Q ss_pred             C
Q ss_conf             9
Q 003496          278 V  278 (815)
Q Consensus       278 ~  278 (815)
                      .
T Consensus       401 r  401 (401)
T d1rrva_         401 R  401 (401)
T ss_dssp             C
T ss_pred             C
T ss_conf             6

>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum [TaxId: 56]}

class: All alpha proteins
fold: Cytochrome P450
superfamily: Cytochrome P450
family: Cytochrome P450
domain: Cytochrome P450epok
species: Sorangium cellulosum [TaxId: 56]

Probab=100.00  E-value=0  Score=30271.56  Aligned_cols=1  Identities=0%  Similarity=-1.391  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~p~~~~dP~~~~~~lr~~gPv~~~~~~~~~vvt~~~~v~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (401)
T d1q5da_           1 DFKPFAPGYAEDPFPAIERLREATPIFYWDEGRSWVLTRYHDVSAVFRDERFAVSREEWESSAEYSSAIPELSDMKKYGL   80 (401)
T ss_dssp             CCCTTSTTTTTCCHHHHHHHHHHCSEEEETTTTEEEECSHHHHHHHHTCTTEECCGGGSTTHHHHHHSSGGGHHHHHHST
T ss_pred             CCCCCCHHHHHCCHHHHHHHHHCCCEEEECCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC
T ss_conf             97989867885949999999846998997999989983999999996598735475433454444655510233013651


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~dg~~h~~~Rk~l~~~fs~~~l~~~~~~i~~~~~~l~~~~~~~~~~d~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  160 (401)
T d1q5da_          81 FGLPPEDHARVRKLVNPSFTSRAIDLLRAEIQRTVDQLLDARSGQEEFDVVRDYAEGIPMRAISALLKVPAECDEKFRRF  160 (401)
T ss_dssp             TTSCHHHHHHHHHHHGGGGSHHHHGGGHHHHHHHHHHHHHHHTTSSCEETTTTTGGGSHHHHHHHHTTCCGGGHHHHHHH
T ss_pred             CCCCHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf             46888889876320421134213566788889888888876531011111578776543101100001100237888888


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~l~~l~~~~~~~~~~~~~~i~~~~~~~l~ag  240 (401)
T d1q5da_         161 GSATARALGVGLVPRVDEETKTLVASVTEGLALLHGVLDERRRNPLENDVLTMLLQAEADGSRLSTKELVALVGAIIAAG  240 (401)
T ss_dssp             HHHHHHHTTTTTSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             99999875112222101677888899999999999877754125644327889876304565207889999999987046


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~etta~~l~~~l~~L~~~p~~~e~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~g~~ip~G~~v~~~~~~~~r  320 (401)
T d1q5da_         241 TDTTIYLIAFAVLNLLRSPEALELVKAEPGLMRNALDEVLRFDNILRIGTVRFARQDLEYCGASIKKGEMVFLLIPSALR  320 (401)
T ss_dssp             SHHHHHHHHHHHHHHHHCHHHHHHHHHCGGGHHHHHHHHHHHSCSBSSEEEEEESSCEEETTEEECTTCEEEEEHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf             32024677778999975299999864465323343210000011134433323345620257666764067421002478


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 dp~~f~dP~~F~PeR~~~~~lpFg~G~r~C~G~~lA~~e~~~~la~ll~rf~~~~l~~~~~~~~~~~~r~~~~l~v~~~p  400 (401)
T d1q5da_         321 DGTVFSRPDVFDVRRDTSASLAYGRGPHVCPGVSLARLEAEIAVGTIFRRFPEMKLKETPVFGYHPAFRNIESLNVILKP  400 (401)
T ss_dssp             CTTTSSSTTSCCTTSCCTTCCTTCCGGGCCTTHHHHHHHHHHHHHHHHHHCTTCEECSCCEECCCSSBCCEEECEEESSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEECCCCCCCCCCCCEEEEEC
T ss_conf             82227995434889999999998997558822999999999999999996799848899840678765686645399961


Q ss_pred             C
Q ss_conf             9
Q 003496          278 V  278 (815)
Q Consensus       278 ~  278 (815)
                      +
T Consensus       401 ~  401 (401)
T d1q5da_         401 S  401 (401)
T ss_dssp             C
T ss_pred             C
T ss_conf             9

>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=30271.40  Aligned_cols=1  Identities=0%  Similarity=-1.590  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~a~~~~~i~igvllP~tg~~~~~~~~~~~a~~lAv~~iN~~g~~~~~~~~g~~i~~~~~D~~~~~~~~~~~~~~l~~~~~   80 (401)
T d1jdpa_           1 EALPPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRVAAARG   80 (401)
T ss_dssp             CCCCCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTHHHHHHHHHHHHTTT
T ss_pred             CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf             99899722899997799940221678999999999999866786556789948999998289997999999999997366


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~v~~iiG~~~s~~~~a~~~~~~~~~ip~is~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~al~~~l~~~~~~~v~il~~  160 (401)
T d1jdpa_          81 AKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYS  160 (401)
T ss_dssp             CCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             88089999987503678878888619854631445542122345677279831546889999999877517737999995


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~i~~~~~~~g~~~~~~~  240 (401)
T d1jdpa_         161 DDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHGMTSGDYA  240 (401)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTSCCCHHHHHHHHHHHCSEEEEESCHHHHHHHHHHHHHTTCTTTTCE
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCEE
T ss_conf             68652057899998888736534899740245676268999998632574069999346889999999998188888769


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~a~~~yDav  320 (401)
T d1jdpa_         241 FFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEGFHDAI  320 (401)
T ss_dssp             EEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf             99633114643347301025542367888865414212458898689999999999984067776666207889999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~l~a~Al~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~Gdr~~~~~~~~~~~~~~g~~~~Vg~~~~~~~~~~~~  400 (401)
T d1jdpa_         321 LLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSIDANGDRYGDFSVIAMTDVEAGTQEVIGDYFGKEGRFEMR  400 (401)
T ss_dssp             HHHHHHHHHHHHTTCCTTCHHHHHHHHSSEEEEETTEEEEECTTSBBCCEEEEEEEEETTTTEEEEEEEEETTTTEEEEC
T ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEECCCEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCEEEEE
T ss_conf             99999999998568999889999999867917717668998999882576799999997898799999998997669974


Q ss_pred             C
Q ss_conf             9
Q 003496          278 V  278 (815)
Q Consensus       278 ~  278 (815)
                      +
T Consensus       401 ~  401 (401)
T d1jdpa_         401 P  401 (401)
T ss_dssp             C
T ss_pred             C
T ss_conf             9

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=30271.21  Aligned_cols=1  Identities=0%  Similarity=-1.257  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~h~~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG   80 (401)
T d1a12a_           1 KKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALG   80 (401)
T ss_dssp             CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTC
T ss_pred             CCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCEECCCEEECCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCC
T ss_conf             93106678999789889999699988889999886503577908999929999189889999679989999589998877


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~g~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g  160 (401)
T d1a12a_          81 RDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASG  160 (401)
T ss_dssp             SCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEEC
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEC
T ss_conf             44655664235542354220022011100101000345311202145655544666775431001100168850699820


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~  240 (401)
T d1a12a_         161 NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH  240 (401)
T ss_dssp             SSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCC
T ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCEEEEEECCCE
T ss_conf             35225650378500346687662288875344567755544335652000035677778439999936876999955981


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~  320 (401)
T d1a12a_         241 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTL  320 (401)
T ss_dssp             EEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEE
T ss_pred             EEEECCCCEECCCCCCCCCCEECCCCCCCCCCCEEEEEEEEECCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCEE
T ss_conf             86512221020354566310000010123554036999851012013561489788840334675678862333558888


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 i~~~~~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~~~~~~v~~v~~G~~hs~~l~~d~~~  400 (401)
T d1a12a_         321 ISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ  400 (401)
T ss_dssp             CCSSSSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECSC
T ss_pred             CCCCCCEEEEEEECCEEEEEECCCEEEEEECCCCCCCCCCCCCCEECCEEEECCCCCCCEEEEEEECCCEEEEEEECCCC
T ss_conf             57999829999308879999489969999259988778999988860789643578998899999752439999979966


Q ss_pred             C
Q ss_conf             9
Q 003496          278 V  278 (815)
Q Consensus       278 ~  278 (815)
                      +
T Consensus       401 ~  401 (401)
T d1a12a_         401 S  401 (401)
T ss_dssp             C
T ss_pred             C
T ss_conf             9

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=100.00  E-value=0  Score=30270.50  Aligned_cols=1  Identities=0%  Similarity=-0.527  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~p~d~i~~~~~~~~~d~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~ai   80 (401)
T d7aata_           1 SSWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRAS   80 (401)
T ss_dssp             CCSSTTCCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf             97010689799986999999983778999588617877688899898789999999996289888889977789999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 a~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~  160 (401)
T d7aata_          81 AELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSL  160 (401)
T ss_dssp             HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEE
T ss_pred             HHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf             99984247865576753885462578899999876674358985599816777640258998599689985424446665


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~  240 (401)
T d7aata_         161 DFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI  240 (401)
T ss_dssp             CHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred             CHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCHHHHCCCCCCCHHHHHHHHHHHC
T ss_conf             37888888722777618999647889855458999999999987356379998636144314886553356666532201


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  320 (401)
T d7aata_         241 DVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMAD  320 (401)
T ss_dssp             CCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             13406751330005515531021261888889888888888764033563057888998841787889999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~e~~~~L~~e~gV~~~pg~Ris~a~~~~~~i~~la~ai~~v~  400 (401)
T d7aata_         321 RIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVT  400 (401)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHCCEEECCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             99999999999999857988863577997589953979999999998299998897179852699888999999999974


Q ss_pred             C
Q ss_conf             9
Q 003496          278 V  278 (815)
Q Consensus       278 ~  278 (815)
                      +
T Consensus       401 k  401 (401)
T d7aata_         401 K  401 (401)
T ss_dssp             C
T ss_pred             C
T ss_conf             9

>d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: RNB domain-like
domain: Ribonuclease II family protein DR0020
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=0  Score=30270.27  Aligned_cols=1  Identities=0%  Similarity=-1.390  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~p~~~~~~~v~ve~~~~~~~~~~~i~~~lg~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~   80 (401)
T d2r7da2           1 QPELTPAQRTEVELLARGRADKSRVLRDLKLPETPEAAHALLLRLGVWDEARTPYADRLRAALNAVELPVPDFDPAEERL   80 (401)
T ss_dssp             CCCCCHHHHHHHHHHHTTSCSCCHHHHHTTCCCSHHHHHHHHHHHTSSCTTCCCHHHHTTCCCSCCCCCCCCCCTTSCCE
T ss_pred             CCCCCCCCEEEEEECCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             99899888899998123899973124522999996569999998199865566780999999863267888743334661


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 Dlr~l~~~tID~~~a~D~DDAisie~~~~g~~~l~VHIADVs~~v~~~s~Ld~eA~~R~tSvYlp~~~~pMLP~~ls~~~  160 (401)
T d2r7da2          81 DLTHLPTFAIDDEGNQDPDDAVGVEDLGGGLTRLWVHVADVAALVAPDSPLDLEARARGATLYLPDRTIGMLPDELVAKA  160 (401)
T ss_dssp             ECTTSCEEEEECTTCCCCCEEEEEEECSTTCEEEEEEEECGGGTCCTTSHHHHHHHHHCBCEECSSCEECSSCHHHHHHH
T ss_pred             CCCCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEECCHHHHCCCCCHHHHHHHHHCCCCCCCCCEEECCCHHHHCCC
T ss_conf             52028679988998864421036787479968999961356662067776899999858464089972423758874132


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 SL~~~~~r~als~~~~ld~~g~i~~~~~~~s~I~~~~ltY~~v~~~~~~~~~~l~~l~~~~~~l~~~R~~~gal~~~~~~  240 (401)
T d2r7da2         161 GLGLHEVSPALSICLDLDPDGNAEAVDVLLTRVKVQRLAYQEAQARLEAGEEPFVTLARLARASRRLREGEGALSIDLPE  240 (401)
T ss_dssp             STTSSSSEEEEEEEEEECTTSCEEEEEEEEEEECEEEEEHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHTTCCCCCCCC
T ss_pred             CCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             24567566541147887267872332488878998301277899886314136788888999999999866884335654


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~d~~~~~~~~~~~~~s~~lVeE~MilAN~~~A~~l~~~~~p~iyR~~~~p~~~~~~~~l~~~~~~~~~~~~a~ys~  320 (401)
T d2r7da2         241 VRVKADETGASVFPLPKPEMRTVVQECMTLAGWGTAIFADDNEIPLPFATQDYPTREVAGDTLPAMWARRKTLARTRFQP  320 (401)
T ss_dssp             EEEEEETTEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEECCCSSCCCCCSHHHHHHHHHHCCCEEEES
T ss_pred             CEEEECCCCCCCCEEECCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCEEEECC
T ss_conf             20221367751002541312456676765301548999864368753103678824432110788887640044006758


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~H~gLgl~~YthfTSPIRRY~DLivhrqL~a~L~~~~~~~~~~l~~~~~~~~~~~~~~~~~er~~~~~~~~~yl~~~  400 (401)
T d2r7da2         321 SPGPHHGMGLDLYAQATSPMRRYLDLVVHQQLRAFLAGRDPLSSKVMAAHIAESQMNADATRQAERLSRRHHTLRFIAAQ  400 (401)
T ss_dssp             SCCCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             98867110678606269725405789999999999769999999999999999999999999999999999999999859


Q ss_pred             C
Q ss_conf             9
Q 003496          278 V  278 (815)
Q Consensus       278 ~  278 (815)
                      +
T Consensus       401 p  401 (401)
T d2r7da2         401 P  401 (401)
T ss_dssp             T
T ss_pred             C
T ss_conf             2

>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces coelicolor [TaxId: 1902]}

class: All alpha proteins
fold: Cytochrome P450
superfamily: Cytochrome P450
family: Cytochrome P450
domain: Cyp154a1 monooxygenase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=100.00  E-value=0  Score=30268.98  Aligned_cols=1  Identities=0%  Similarity=0.204  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~dp~~~d~~~~~~~lr~~Gpv~~~~~~g~~~vvv~~~~~v~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (401)
T d1odoa_           1 ALVLDPTGADHHTEHRTLREGGPATWVDVLGVQAWSVSDPVLLKQLLTSSDVSKDARAHWPAFGEVVGTWPLALWVAVEN   80 (401)
T ss_dssp             CEECCTTCTTHHHHHHHHHTTCSEEEEEETTEEEEEECCHHHHHHHTTCTTEESCHHHHCTTHHHHTTTCTTTHHHHCCS
T ss_pred             CEECCCCCCCHHHHHHHHHHHCCEEEEECCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf             94358899981999999996399899964991199988999999996397724366666532223455541123304787


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 l~~~~g~~h~~~R~~l~~~fs~~~v~~~~~~i~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~~~~~~~~  160 (401)
T d1odoa_          81 MFTAYGPNHRKLRRLVAPAFSARRVDAMRPAVEAMVTGLVDRLAELPAGEPVDLRQELAYPLPIAVIGHLMGVPQDRRDG  160 (401)
T ss_dssp             GGGCCHHHHHHHHHTTGGGGSHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCEEHHHHTTTHHHHHHHHHHHTCCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHH
T ss_conf             62388599999999877651721477777788999999976422013332222321000000011221235653112123


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ei~~~~~~l~~~g~~t  240 (401)
T d1odoa_         161 FRALVDGVFDTTLDQAEAQANTARLYEVLDQLIAAKRATPGDDMTSLLIAARDDEGDGDRLSPEELRDTLLLMISAGYET  240 (401)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             44455554310102578899999999999987664136776642232112333334689799999999999998656521


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~e~~R~~p~~~~~~~~~~~~d~~~~~G~~ip~Gt~v~~~~~~~hrd~  320 (401)
T d1odoa_         241 TVNVIDQAVHTLLTRPDQLALVRKGEVTWADVVEETLRHEPAVKHLPLRYAVTDIALPDGRTIARGEPILASYAAANRHP  320 (401)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHTSSCHHHHHHHHHHHSCSBSCEEEEEESSCEECTTSCEECTTCEEEECHHHHTTCT
T ss_pred             HHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCEEECCCCCCCCCHHHHHCCC
T ss_conf             02355543201343214431001233311000001111112455333322346525229779617952324488870772


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       321 ~~~~dp~~F~PeR~~~~~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~l~~~~~~~~~~~~~~~~~~~~lpv~~~  400 (401)
T d1odoa_         321 DWHEDADTFDATRTVKEHLAFGHGVHFCLGAPLARMEVTLALESLFGRFPDLRLADPAEELPPVPSLISNGHQRLPVLLH  400 (401)
T ss_dssp             TTSTTTTSCCTTCSCCCCCTTCSSTTSCTTHHHHHHHHHHHHHHHHHHCTTCEESCTTSCCCBCSCSSBCCBSCCEEECC
T ss_pred             CCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             22896543287878999987789884783599999999999999999779868899877771467875579874059983


Q ss_pred             C
Q ss_conf             9
Q 003496          278 V  278 (815)
Q Consensus       278 ~  278 (815)
                      .
T Consensus       401 ~  401 (401)
T d1odoa_         401 A  401 (401)
T ss_dssp             -
T ss_pred             C
T ss_conf             9

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=0  Score=30194.97  Aligned_cols=1  Identities=0%  Similarity=-1.324  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~dl~ss~~~~~~~~~~~~~~l~~e~~~~i~~~~~~~~~~~~~~~i~~~l~~~~~~~l~Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_           1 NDLPSSFTGYFKKFNTGRKIISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             CCHHHHHHHHHTTSCGGGCSSCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             96178899999877654004409899999998861777989999999997443677179998999997899999995888


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~d~~l~~~l~~  160 (400)
T d1tq4a_          81 NEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISM  160 (400)
T ss_dssp             TTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             67775678999887044553110689707998379854333449999987433226599996588887889999999997


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         161 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  240 (400)
T ss_dssp             TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             CCCCEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             69987999708632101354322011227889999999999999874899897797337764515899999999998399


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~l~~~~~~~i~~K~~~~~~~i~~~a~~a~~~~~iP~p~~~~~~d~~~l~~~l~~y~~~fGlD~~sL~~lA~~  320 (400)
T d1tq4a_         241 YKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTFLLDSDLETLKKSMKFYRTVFGVDETSLQRLARD  320 (400)
T ss_dssp             GGHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHTCCBSSCTTSSCCCHHHHHHHHHHHHHHHHHTTCSHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99999998516657999999899999999999999734246886303201329999999999999809998999999999


Q ss_pred             -------------------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------------------~  278 (815)
                                                                                                     .
T Consensus       321 ~~~~~~~lka~iks~~~~~~~~~~~i~~~l~k~~~~~~~~~G~~~a~~~~f~~~~~l~~~~l~~~aedak~~l~~~~~~n  400 (400)
T d1tq4a_         321 WEIEVDQVEAMIKSPAVFKPTDEETIQERLSRYIQEFCLANGYLLPKNSFLKEIFYLKYYFLDMVTEDAKTLLKEICLRN  400 (400)
T ss_dssp             SSSCHHHHHHTCSHHHHTSSCCHHHHHHHHHHHHHHHHHHHCCSSSTTCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             29989999999708366555567899999999887883052389999999999999999999999999999999986559

>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate transeliminase
domain: Pectate transeliminase
species: Erwinia chrysanthemi [TaxId: 556]

Probab=100.00  E-value=0  Score=30194.67  Aligned_cols=1  Identities=0%  Similarity=-0.560  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~YVs~~Gsd~~~Gs~~~p~~tIq~Ai~~a~~GDtI~v~~GtY~~~~~~~~~~~~~~~~~G~~~~   80 (400)
T d1ru4a_           1 ADCSSDLTSGISTKRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVNPGELILLKPGTYTIPYTQGKGNTITFNKSGKDGA   80 (400)
T ss_dssp             CCCTTCTTTTCCCSCEEEECTTCCTTCCSSSTTSCBCHHHHHHHCCTTCEEEECSEEEECCCBTTBCCCEEECCCCBTTB
T ss_pred             CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCEEECCEEECCCEEEEEECCCCCCC
T ss_conf             97532000564447769997998679998722447889999983899599998695516651205753899723777897


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~i~i~~~~~~~~vi~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~n~~i~~~~~~g~~~~~~~  160 (400)
T d1ru4a_          81 PIYVAAANCGRAVFDFSFPDSQWVQASYGFYVTGDYWYFKGVEVTRAGYQGAYVIGSHNTFENTAFHHNRNTGLEINNGG  160 (400)
T ss_dssp             CEEEEEGGGCCEEEECCCCTTCCCTTCCSEEECSSCEEEESEEEESCSSCSEEECSSSCEEESCEEESCSSCSEEECTTC
T ss_pred             EEEEECCCCCEEEEECCCCCCCCCCCCCEEEEECCCEEEECCEEECCCCEEEEECCCCCCCCCCEEECCCCCEEEEECCC
T ss_conf             29996079972599587623343323431787447479944342067111222023421024526852775117885555


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~G~~~~~~~~~~~i~nn~~~~n~~~~~~~~~~  240 (400)
T d1ru4a_         161 SYNTVINSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWNDSAF  240 (400)
T ss_dssp             CSCEEESCEEECCCCTTTTTSSCCSEEECTTCCSCCEEESCEEESCSSCSEECTTCCSCCEEESCEEESTTCCCSCCTTC
T ss_pred             CCCEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEECCEEEECCCCCEEEEECCCCEEEECEEEECCCCCCCCCCCC
T ss_conf             42179974677134565442222024689612566166433566426766368824898799775998654101456430


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~n~~~~n~~~g~~~~~~~~~~~i~nN~~~~n~~~~~~~~~~~~~~~~~~~nN~~~~~~~  320 (400)
T d1ru4a_         241 AGNGNGFKLGGNQAVGNHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYKNGINYGFGSNVQSGQKHYFRNNVSLSASV  320 (400)
T ss_dssp             CCCCCSEECCCTTCCCCCEEESCEEESCSSEEEECTTCSSCCEEESCEEESSSEEEEECSCCCTTCCEEEESCEEESSCE
T ss_pred             CCCCCEEECCCCCCCCCEEEEEEEEECCCCCCEEECCCCCCCCEECCEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCE
T ss_conf             01373365047776665589877886366553040357664112265687255430343223567650798328834740


Q ss_pred             -------------------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------------------~  278 (815)
                                                                                                     .
T Consensus       321 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~Spai~aG~~~~~~~~~G~~pDiGAyE~~  400 (400)
T d1ru4a_         321 TVSNADAKSNSWDTGPAASASDFVSLDTSLATVSRDNDGTLPETSLFRLSANSKLINAGTKESNISYSGSAPDLGAFERN  400 (400)
T ss_dssp             EECSEEEESSTTTTSCCCCGGGBSBCCGGGGGCCCCTTCCCCCCSBTCBCTTCTTTTCSCCCTTCCCSTTSCCSSSCCCC
T ss_pred             EEECCCCCCCEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             34134323522546730147761674643244656777767768884378998100487877788989986776777588

>d3ovwa_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) {Fusarium oxysporum [TaxId: 5507]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolase family 7 catalytic core
domain: Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1)
species: Fusarium oxysporum [TaxId: 5507]

Probab=100.00  E-value=0  Score=30192.97  Aligned_cols=1  Identities=100%  Similarity=0.138  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 q~~~~t~E~HP~ltwq~CT~~ggCt~~~g~vV~D~nwrw~h~~~g~~~c~~gn~w~~~lCpd~~tCa~nC~ldGad~~~y   80 (400)
T d3ovwa_           1 ETPDKAKEQHPKLETYRCTKASGCKKQTNYIVADAGIHGIRQKNGAGCGDWGQKPNATACPDEASCAKNCILSGMDSNAY   80 (400)
T ss_dssp             CEECSSCCCCCEEEEEEEETTTEEEEEEEEEEECHHHHCEECTTSCBSCCTTSCCCTTTCSSHHHHHHHCEECCCCHHHH
T ss_pred             CCCCCCCCCCCCCEEEEECCCCCCEECCCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf             98887676588523265058998586233499824733244058973234388565344887566676435237664555


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~GVttsG~sLtl~~vt~~~~vGsRvYLl~~d~~~Yqmf~Llg~EfTFdVD~S~lpCGlNgALYfveM~adGg~s~~~~  160 (400)
T d3ovwa_          81 KNAGITTSGNKLRLQQLINNQLVSPRVYLLEENKKKYEMLHLTGTEFSFDVEMEKLPCGMNGALYLSEMPQDGGKSTSRN  160 (400)
T ss_dssp             HHTTEEEETTEEEEESEETTEECCCEEEEECTTSSSBCEECCTTCEEEEEEECTTCCTTEEEEEEEECCCTTTTGGGCTT
T ss_pred             CCEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCC
T ss_conf             40569953881899857548832621899757877357899338678888633568764322565662167778666788


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 n~aGAkYGtGYCDAQC~d~kfInG~aNv~g~GsCC~EmDIwEANs~a~a~TpH~C~~~g~~~C~g~~Cg~~g~CD~~GC~  240 (400)
T d3ovwa_         161 SKAGAYYGAGYCDAQCYVTPFINGVGNIKGQGVCCNELDIWEANSRATHIAPHPCSKPGLYGCTGDECGSSGICDKAGCG  240 (400)
T ss_dssp             CCCTGGGTCCCCBTTCCBCSEETTEECTTCCEEECCEEEEEEECSSCEEEEEECBSSCSCEEECGGGGSTTSSBCSSCCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf             76666367722113156243205621346655555641101110455320688656787336457767888860888867


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 fNpYR~g~~~FyG~G~~~tVDT~k~fTVVTQF~~~~~G~L~eIrR~YVQ~GkvI~n~~~~~~g~~~~~sit~~fC~~~~~  320 (400)
T d3ovwa_         241 WNHNRINVTDFYGRGKQYKVDSTRKFTVTSQFVANKQGDLIELHRHYIQDNKVIESAVVNISGPPKINFINDKYCAATGA  320 (400)
T ss_dssp             BCGGGGTCTTSEESSTTSSEETTSCEEEEEEEEECTTSCEEEEEEEEEETTEEEECCCCCSSSSCSCSSBCHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEEEECCEEECCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf             67433488754878987142379973899788708985368998999609999668875677887677346677546786


Q ss_pred             -------------------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------------------~  278 (815)
                                                                                                     .
T Consensus       321 ~~f~~~GGl~~mg~al~rGmVLv~SlWdd~~~~M~WLDsg~~GpC~~tsg~p~~ve~~~p~a~Vt~SNIKfG~I~STy~~  400 (400)
T d3ovwa_         321 NEYMRLGGTKQMGDAMSRGMVLAMSVWWSEGDFMAWLDQGVAGPCDATEGDPKNIVKVQPNPEVTFSNIRIGEIGSTSSV  400 (400)
T ss_dssp             HHHHHTTHHHHHHHHHHHCEEEEEEEEECTTTTTHHHHBTTSCSBCSSTTSHHHHHHHCSSCEEEEEEEEEESTTCSCCC
T ss_pred             CHHHHCCCHHHHHHHHCCCEEEEEEEEECCCCCCEECCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEECEECCCCCCCCC
T ss_conf             42443476889888850886999986847999866204898878888888855651328997799860768577763119

>d1inpa_ e.7.1.1 (A:) Inositol polyphosphate 1-phosphatase {Cow (Bos taurus), brain [TaxId: 9913]}

class: Multi-domain proteins (alpha and beta)
fold: Carbohydrate phosphatase
superfamily: Carbohydrate phosphatase
family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like
domain: Inositol polyphosphate 1-phosphatase
species: Cow (Bos taurus), brain [TaxId: 9913]

Probab=100.00  E-value=0  Score=30191.44  Aligned_cols=1  Identities=0%  Similarity=-0.295  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~~~l~~~l~~aekAa~iar~~~~~~~l~~~~v~ek~~~~~~~k~~~D~VT~AD~~aq~~I~~~L~~~fP~~~~~IvGEE   80 (400)
T d1inpa_           1 MSDILQELLRVSEKAANIARACRQQETLFQLLIEEKKEGEKNKKFAVDFKTLADVLVQEVIKENMENKFPGLGKKIFGEE   80 (400)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHSHHHHTCCCCSCCCCTTTTCCCCHHHHHHHHHHHHHHHHHHHHHSTTGGGGEEESS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCC
T ss_conf             96899999999999999999998501687767643136534626799984189999999999999987869999988158


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~IDPIDGT~~  160 (400)
T d1inpa_          81 SNELTNDLGEKIIMRLGPTEEETVALLSKVLNGNKLASEALAKVVHQDVFFSDPALDSVEINIPQDILGIWVDPIDSTYQ  160 (400)
T ss_dssp             CSEEECTTSCEEECCCCSSCSCHHHHHHHHTTTCTTHHHHHHHHHTCCCCCCCSSSSSCCCCCCGGGEEEEEEEEECHHH
T ss_pred             CCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEECCCCCHH
T ss_conf             88654544311122024136666666543114542023342023231100011001232356787656299952758420


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 Fi~G~~~~~v~iaL~~~~~~~v~vlI~lal~~~G~Pv~GvI~~P~~~~~~~~~~~~G~~~~a~~g~Ga~~~~~~~~~~~~  240 (400)
T d1inpa_         161 YIKGSADITPNQGIFPSGLQCVTVLIGVYDIQTGVPLMGVINQPFVSQDLHTRRWKGQCYWGLSYLGTNIHSLLPPVSTR  240 (400)
T ss_dssp             HHHCCCCCCCBTTBCSSSGGGCEEEEEEEETTTCCEEEEEEEEEEEEECTTTCCEEEEEEEEEESSSEEECCSCCTTSST
T ss_pred             HCCCCCCCEEEEEHHCCCCCCCEEEEEEHHEECCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf             12699643255500126665313565201007897898475455446400023678428997437673236766665544


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~g~a~~k~~~VA~G~~D~yl~~~~~~~~WD~aA  320 (400)
T d1inpa_         241 SNSEAQSQGTQNPSSEGSCRFSVVISTSEKETIKGALSHVCGERIFRAAGAGYKSLCVILGLADIYIFSEDTTFKWDSCA  320 (400)
T ss_dssp             TTSSCSSCCCCBTTBTTSSSSCCEEEECTTCCSCCCCTTTTCCEEEECCCHHHHHHHHHHTSCSEEEECSSCCBHHHHHH
T ss_pred             CCCCCCCEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH
T ss_conf             44322201025675333454047850345389999999747954997558899999996899888995578998788799


Q ss_pred             -------------------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------------------~  278 (815)
                                                                                                     .
T Consensus       321 g~~Il~eaGG~VtD~~G~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~N~~giIA~~~~~~h~~~l~~l~~~l~~~~~~~  400 (400)
T d1inpa_         321 AHAILRAMGGGMVDLKECLERNPDTGLDLPQLVYHVGNEGAAGVDQWANKGGLIAYRSEKQLETFLSRLLQHLAPVATHT  400 (400)
T ss_dssp             HHHHHHTTTCEEEEHHHHHHSCTTSSCSTTBCCSSCCSTTTTTTCTTBCTTCEEEESCHHHHHHHTCCCTTTCCCCSCCC
T ss_pred             HHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             99999978997987999962466544445210014443223553101556878997888999999999997633546789

>d2olua2 e.3.1.1 (A:293-692) Penicillin-binding protein 2, PBP2 {Staphylococcus aureus [TaxId: 1280]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: Penicillin-binding protein 2, PBP2
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=0  Score=30188.34  Aligned_cols=1  Identities=0%  Similarity=-0.825  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~y~~~~d~v~~~l~~~~~~~~~~~~~~~~~G~~I~TTlD~~lQ~~ae~~l~~~~~~~~~~~~~a~vvvd~~TG~I   80 (400)
T d2olua2           1 TNQDSEYNSYVNFVKSELMNNKAFKDENLGNVLQSGIKIYTNMDKDVQKTLQNDVDNGSFYKNKDQQVGATILDSKTGGL   80 (400)
T ss_dssp             CCCSGGGHHHHHHHHHHHTTSTTTTTSCHHHHTTBCCEEEECCCHHHHHHHHHHHHHCSCCSSTTEEEEEEEEETTTCBE
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCE
T ss_conf             99877557999999999986128766567786679988995889999999999998534214867528999998899959


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 lAm~~~~~y~~~~~~n~~~~~~~pGStfKp~v~~aaale~g~~~~~~~~~~~~~~~~~~~~~~n~~~~~~G~v~l~~Al~  160 (400)
T d2olua2          81 VAISGGRDFKDVVNRNQATDPHPTGSSLKPFLAYGPAIENMKWATNHAIQDESSYQVDGSTFRNYDTKSHGTVSIYDALR  160 (400)
T ss_dssp             EEEECSTTCCTTTSCCTTTSCEECGGGGHHHHTHHHHHHHTCCCTTBEEECCSSEEETTEEECCTTSCCCCEEEHHHHHH
T ss_pred             EEEEECCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99997888883233321000003666556178899986458721110013334421111013366655553334322355


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~S~N~~~v~l~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~lg~g~~~vtplqlA~aya~iANgG~~~~P~~v~~i~~  240 (400)
T d2olua2         161 QSFNIPALKAWQSVKQNAGNDAPKKFAAKLGLNYEGDIGPSEVLGGSASEFSPTQLASAFAAIANGGTYNNAHSIQKVVT  240 (400)
T ss_dssp             TTCHHHHHHHHHHHHHHTCTTHHHHHHHHTTCCCSSCCCHHHHTTCTTCEECHHHHHHHHHHHHTTSEEECCBCEEEEEC
T ss_pred             CCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEECCCEEEEEEECCCCCC
T ss_conf             66511123200010024567889999987088731121100000123456778886400100005964787674011356


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~g~~v~~~~~~~~v~s~~~a~~l~~~l~~vv~~~Gt~~~~~~~g~~vagKTGTa~~~~~~~~~~~~~~~~~~daWFvG~  320 (400)
T d2olua2         241 RDGETIEYDHTSHKAMSDYTAYMLAEMLKGTFKPYGSAYGHGVSGVNMGAKTGTGTYGAETYSQYNLPDNAAKDVWINGF  320 (400)
T ss_dssp             TTSCEEECCCCEEECSCHHHHHHHHHHHHGGGSTTSTTTTCCCSSCCCEEEEEEECCCHHHHHHTTCCTTEESEEEEEEE
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf             43232222222222113789999976521433541000111357814777611144576576544566687640799983


Q ss_pred             -------------------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------------------~  278 (815)
                                                                                                     .
T Consensus       321 ~P~~~~~VwvG~d~~~~~~~~~~~~~~~~~~~a~i~~~~m~~~~~~~~~~f~~P~~v~~~~p~~~~~~~~~~~~~~~~~~  400 (400)
T d2olua2         321 TPQYTMSVWMGFSKVKQYGENSFVGHSQQEYPQFLYENVMSKISSRDGEDFKRPSSVSGSIPSINVSGSQDNNTTNRSTH  400 (400)
T ss_dssp             CSSEEEEEEEEESSCCGGGTTSEESHHHHTHHHHHHHHHHHHHSCCSCCCCCCCTTEESCTTCCEETTCCCSSBCCCCCC
T ss_pred             CCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             69969999984688875676765676433579999999999975689666999998766777554789999998888889

>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Glycosyltrehalose trehalohydrolase, central domain
species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]

Probab=100.00  E-value=0  Score=30189.12  Aligned_cols=1  Identities=0%  Similarity=-0.228  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~viYe~~v~~f~~~Gd~~gi~~~ldyi~~LGv~~i~l~Pv~~~~~~~~~GY~~~d~~~vd~~~Gt~~dl   80 (400)
T d1eh9a3           1 FNNETFLKKEDLIIYEIHVGTFTPEGTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGF   80 (400)
T ss_dssp             CCSCCSCCSSSCCEEEECTTTSSSSCSHHHHHHTHHHHHHHTCCEEEECCCBCCSSSCCCSTTCCCTTCBCSTTCCHHHH
T ss_pred             CCCCCCCCCCCEEEEEEEHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             99877688768599998312307899999999875899975998899687676889999997877778858221999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 k~lv~~~h~~gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~v~~~l~d~~~~Wl~~~gvDGfR  160 (400)
T d1eh9a3          81 RKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKLGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFR  160 (400)
T ss_dssp             HHHHHHHHHTTCEEEEEECCSCCCSSSCCHHHHSCCSCSSCCCSSSCCCCSSSTTHHHHHHHHHHHHHHHHHHSCCCCEE
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             99999997637713542244642577850443100211234545564435565556079999999999887524663688


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~Daa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (400)
T d1eh9a3         161 LDAVHAIIDTSPKHILEEIADVVHKYNRIVIAESDLNDPRVVNPKEKCGYNIDAQWVDDFHHSIHAYLTGERQGYYTDFG  240 (400)
T ss_dssp             ETTGGGCCCCSSSCHHHHHHHHHHHTTCCEEECCCSCCTTTTSCGGGTCCCCSEEECHHHHHHHHHHHSCCCSGGGGGCC
T ss_pred             EECHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCEECCCCCCCCCHHHHHHHCCCCCCHHHHHH
T ss_conf             60434415114565589999987533222110100468442564553352000212665310467665033210145444


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~a~a~~l~~pGi  320 (400)
T d1eh9a3         241 NLDDIVKSYKDVFVYDGKYSNFRRKTHGEPVGELDGCNFVVYIQNHDQVGNRGKGERIIKLVDRESYKIAAALYLLSPYI  320 (400)
T ss_dssp             SHHHHHHHHHSSCSCSSEEETTTTEEECCCCCSCCGGGEECCSCCHHHHHTTTTCCCGGGGSCHHHHHHHHHHHHSSSSC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             35789987543211221478999874465233304400443122046553356401267776656778999999848997


Q ss_pred             -------------------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------------------~  278 (815)
                                                                                                     .
T Consensus       321 P~iy~G~E~G~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~lRk~~pv~  400 (400)
T d1eh9a3         321 PMIFMGEEYGEENPFYFFSDFSDSKLIQGVREGRKKENGQDTDPQDESTFNASKLSWKIDEEIFSFYKILIKMRKELSIA  400 (400)
T ss_dssp             CEEESSGGGTCCCCCCCCCCCCSTTHHHHHHHHHHHHTCCCSCTTSHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHTCS
T ss_pred             CEEECCHHHCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             78977853288898875010266877666676405766789876552346556677657899999999999999678699

>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Old yellow enzyme (OYE)
species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]

Probab=100.00  E-value=0  Score=30117.67  Aligned_cols=1  Identities=0%  Similarity=-0.527  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~p~~~~~~~LFsP~~Ig~~~lkNRiv~apm~~~~a~~~G~~~~~d~~i~yy~~rA~GG~GlIi~e~~~V~~~g~   80 (399)
T d1oyaa_           1 SFVKDFKPQALGDTNLFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAG   80 (399)
T ss_dssp             CBCTTCCCCCCTTSGGGSCEEETTEEESSSEEBCCCCCCCCBTTTTBCCTTTHHHHHHHHTCSTTCEEEEEEEESSGGGC
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECCEEECCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCEEECCCCC
T ss_conf             97455888889999999973289988637668777667757899897987999999999972890799964377776547


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~l~~d~~i~~~k~l~~~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~~~~~~p~~  160 (399)
T d1oyaa_          81 GYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLWVLGWAAFPDNLARDGLRYDSASDNVFMDAEQEAKAKKANNPQHS  160 (399)
T ss_dssp             CCTTSCBSSSHHHHHHHHHHHHHHHHTTCEEEEEEECCGGGSCHHHHHHTTCCEEESCSSCCSCHHHHHHHHHTTCCEEE
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf             78998745787998888699999975201221233220234574211334445667543566777777666567887520


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 mt~~eI~~ii~~f~~AA~rA~~AGfDgVEIH~aHGYLl~qFLSp~tN~RtDeYGGSlENR~Rf~~Eii~aIR~~vg~~~I  240 (399)
T d1oyaa_         161 LTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKV  240 (399)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCC
T ss_conf             15677888888999999999980975676124377789986413035665224765665457799998754340222574


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 gvRls~~d~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~PV  320 (399)
T d1oyaa_         241 GLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWKGPV  320 (399)
T ss_dssp             EEEECTTCCTTTCCGGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSCTTSCTTSSCCCSCCTTHHHHHCCSCE
T ss_pred             EEEECHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE
T ss_conf             47853022025667741000577899999889874324543441122146677755454432111268999999829988


Q ss_pred             ------------------------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------------------------~  278 (815)
                                                                                                    .
T Consensus       321 i~~G~i~~~~~~~~~i~~~~aDlV~~gR~liaDP~l~~K~~~G~~ln~~d~~~~~~~~~~gyt~~p~~~~~~~~~~~~~  399 (399)
T d1oyaa_         321 IRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMSAHGYIDYPTYEEALKLGWDKK  399 (399)
T ss_dssp             EEESSCTTCHHHHHHHTTSTTEEEECCHHHHHCTTHHHHHHHTCCCBCCCGGGSSCSSSTTTTCCCCHHHHHHTTSSCC
T ss_pred             EEECCCCCHHHHHHHHHCCCCEEHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf             9978989869999999759981848879999791299999729998999653267899988084845499997489999

>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase {Fungus (Fusarium oxysporum) [TaxId: 5507]}

class: All alpha proteins
fold: Cytochrome P450
superfamily: Cytochrome P450
family: Cytochrome P450
domain: Cytochrome P450-NOR, nitric reductase
species: Fungus (Fusarium oxysporum) [TaxId: 5507]

Probab=100.00  E-value=0  Score=30115.61  Aligned_cols=1  Identities=0%  Similarity=0.204  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~p~~~~~~~dP~~~~~~Lr~~gPv~~~~~~~g~~~~vvt~~~dv~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (399)
T d1jfba_           1 APSFPFSRASGPEPPAEFAKLRATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELSASGKQAAKAKP   80 (399)
T ss_dssp             CCBSSCCCSSTTSCCTHHHHHHHHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCSHHHHHHTTSCC
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99899898766596899999996399688763789569997699999999769763547654567654544211012477


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~l~~~dg~~h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~  160 (399)
T d1jfba_          81 TFVDMDPPEHMHQRSMVEPTFTPEAVKNLQPYIQRTVDDLLEQMKQKGCANGPVDLVKEFALPVPSYIIYTLLGVPFNDL  160 (399)
T ss_dssp             CGGGCCTTHHHHHHTTTGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCEEHHHHTTTHHHHHHHHHHHTCCGGGH
T ss_pred             CHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             32226869999987400764566532111026789899887454321244431024566655667788887651000036


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~d~~~~~~~~~~~~~~~~~~ei~~~~~~~~~ag~~tt  240 (399)
T d1jfba_         161 EYLTQQNAIRTNGSSTAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAFLLLVAGNATM  240 (399)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHTTTTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHH
T ss_conf             78888766531000027899999999999999999998630245544322222223577762112212334322002015


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~l~~~~~~L~~~pe~~~~L~~e~~~~~~~~~e~lr~~~~~~~~~~R~~~~~~~~~g~~ip~G~~V~~~~~~~~~dp~~  320 (399)
T d1jfba_         241 VNMIALGVATLAQHPDQLAQLKANPSLAPQFVEELCRYHTASALAIKRTAKEDVMIGDKLVRANEGIIASNQSANRDEEV  320 (399)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHHHCGGGHHHHHHHHHHHSCSCCSCCEEEESSCEEETTEEECTTCEEEECHHHHTTCTTT
T ss_pred             HHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHH
T ss_conf             66999999998456589999741345321101101232223433333222013334577676653211114451578422


Q ss_pred             ------------------------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------------------------~  278 (815)
                                                                                                    -
T Consensus       321 ~~dP~~F~PeR~~~~~~~lpFG~G~r~C~G~~lA~~el~~~l~~Ll~rfp~~~l~~~~~~~~~~~~~~~~g~~~lpv~~  399 (399)
T d1jfba_         321 FENPDEFNMNRKWPPQDPLGFGFGDHRCIAEHLAKAELTTVFSTLYQKFPDLKVAVPLGKINYTPLNRDVGIVDLPVIF  399 (399)
T ss_dssp             SSSTTSCCTTCCCCSSCCCTTCCGGGSCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCEECCTTSCSCEEECEEEC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCCCCCCCCCEEEC
T ss_conf             7996445868889999886889997368069999999999999999967967899887776467787777871351039

>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId: 1902]}

class: All alpha proteins
fold: Cytochrome P450
superfamily: Cytochrome P450
family: Cytochrome P450
domain: Cyp158a2
species: Streptomyces coelicolor [TaxId: 1902]

Probab=100.00  E-value=0  Score=30114.86  Aligned_cols=1  Identities=0%  Similarity=-0.758  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~p~~~~~~~~~~~~~~~~p~~~~lr~~gPv~~~~~~~g~~~~wvvt~~e~v~~vl~d~~~~~~~~~~~~~~~~~~~~~   80 (399)
T d1s1fa_           1 QAVPPVRDWPAVDLPGSDFDPVLTELMREGPVTRISLPNGEGWAWLVTRHDDVRLVTNDPRFGREAVMDRQVTRLAPHFI   80 (399)
T ss_dssp             CCSCCEEECCCCCCCTTCCCHHHHHHHHHCSEEEEECSBSBSCEEEECSHHHHHHHHTCTTEESTTTTTTTBCBSSSSCS
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99899899887789999989999999971996898416886588996599999999769764456555555444561001


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~Dg~~H~~~Rr~l~~~Fs~~~l~~~~~~i~~~~~~l~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~~~~~  160 (399)
T d1s1fa_          81 PARGAVGFLDPPDHTRLRRSVAAAFTARGVERVRERSRGMLDELVDAMLRAGPPADLTEAVLSPFPIAVICELMGVPATD  160 (399)
T ss_dssp             SCTTSGGGCCTTHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHCSSEEHHHHTTTHHHHHHHHHHHTCCGGG
T ss_pred             CCCCCHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHEEHHCCCCCHHH
T ss_conf             33452010586778999987484347412678999999999998620234565032024554433430001104883455


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~tT~  240 (399)
T d1s1fa_         161 RHSMHTWTQLILSSSHGAEVSERAKNEMNAYFSDLIGLRSDSAGEDVTSLLGAAVGRDEITLSEAVGLAVLLQIGGEAVT  240 (399)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHTHHHHHHHHHHHTSCCSCCCSHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             44566677887512232046788888899999999987630223201232001256655507777777888751342222


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~l~~~l~~l~~~p~~~~~~~~~~~~~~~~~~e~~r~~p~~~~~~~~R~~~~~~~l~G~~ip~Gt~V~~~~~~~~rdp~~  320 (399)
T d1s1fa_         241 NNSGQMFHLLLSRPELAERLRSEPEIRPRAIDELLRWIPHRNAVGLSRIALEDVEIKGVRIRAGDAVYVSYLAANRDPEV  320 (399)
T ss_dssp             HHHHHHHHHHHHSHHHHHHHHHCGGGHHHHHHHHHHHSCCBSSCCCCEEESSCEEETTEEECTTCEEEECHHHHTTCTTT
T ss_pred             CCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEECCCCEECCCCCCCCCCHHH
T ss_conf             20222122343085155431232013532122211246632223432100002540533533897501233334668110


Q ss_pred             ------------------------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------------------------~  278 (815)
                                                                                                    .
T Consensus       321 ~~dP~~F~PeR~~~~~lpFG~G~r~C~G~~lA~~e~~~~l~~Ll~rf~~~~~~~~~~~~~~~~~~~~rg~~~lpv~~~~  399 (399)
T d1s1fa_         321 FPDPDRIDFERSPNPHVSFGFGPHYCPGGMLARLESELLVDAVLDRVPGLKLAVAPEDVPFKKGALIRGPEALPVTWHA  399 (399)
T ss_dssp             SSSTTSCCTTC--CCCCTTCCSTTCCTTHHHHHHHHHHHHHHHHHHSTTCEESSCGGGSCBCSSCSBCCBSCCEEECCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEECCCCCCCCEEEEEEEEC
T ss_conf             6995444889999997777988617815999999999999999997798788889666525168744287047899849

>d2ah2a2 b.68.1.1 (A:1-399) Trypanosoma sialidase {Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Sialidases
family: Sialidases (neuraminidases)
domain: Trypanosoma sialidase
species: Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]

Probab=100.00  E-value=0  Score=30113.53  Aligned_cols=1  Identities=0%  Similarity=-0.461  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~syRIPsLv~~~GtlLA~ae~R~~~~~D~~~idiv~rRS~D~GkTWs~~   80 (399)
T d2ah2a2           1 LAPGSSRVELFKRQSSKVPFEKDGKVTERVVHSFRLPALVNVDGVMVAIADARYETSFDNSLIDTVAKYSVDDGETWETQ   80 (399)
T ss_dssp             CCTTCEEEEEECTTTCEEEEEETTEEEEEECSEEEEEEEEEETTEEEEEEEEESSCSCSSSCEEEEEEEESSTTSSCEEE
T ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECEEEEEECCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCE
T ss_conf             98886434203788765775568988985699991308999899999999179888998720378998532788578762


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~v~~~~~~~~~~~~dP~~v~d~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~g~tWs~p~~i~  160 (399)
T d2ah2a2          81 IAIKNSRASSVSRVVDPTVIVKGNKLYVLVGSYNSSRSYWTSHGDARDWDILLAVGEVTKSTAGGKITASIKWGSPVSLK  160 (399)
T ss_dssp             EEECCCCSSTTCEEEEEEEEEETTEEEEEEEEESSCCSCGGGCSSSTTEEEEEEEEEEEEECGGGSCEEEEEECCCEECG
T ss_pred             EEEECCCCCCCCCCCCCEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             89724777776666688599849969999997658886221125788876258977998646798366773258832056


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~g~~~gi~~~~GrLv~p~~~~~~~~~~~s~~iySdD~G~TW~~g~~~~~~~~~~~~v~~~dG~l  240 (399)
T d2ah2a2         161 EFFPAEMEGMHTNQFLGGAGVAIVASNGNLVYPVQVTNKKKQVFSKIFYSEDEGKTWKFGKGRSAFGCSEPVALEWEGKL  240 (399)
T ss_dssp             GGSCSEETTEEEEEEEECSEECEECTTSCEEEEEEEEETTCCEEEEEEEESSTTSSCEECSCCCCTTCEEEEEEEETTEE
T ss_pred             CCCCCCCCCCCCCEECCCCCCEEEECCCCEECCEEEECCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCCCEECCCCEE
T ss_conf             53465335753100526775303304863731337534887468899995899851683465589875566300358818


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ll~~R~~~g~r~v~~S~DgG~TW~~~~~~~~~v~~~~~~~~~~~~~~~li~~~~~~~~~lLfsnp~~~~~~~~r~~l~l~  320 (399)
T d2ah2a2         241 IINTRVDYRRRLVYESSDMGNTWLEAVGTLSRVWGPSPKSNQPGSQSSFTAVTIEGMRVMLFTHPLNFKGRWLRDRLNLW  320 (399)
T ss_dssp             EEEEECTTSCCCEEEESSTTSSCEECTTTTTTCBCSSTTSCSCCCCCCEEEEEETTEEEEEEEEECCSSCTTCCBCEEEE
T ss_pred             EEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEE
T ss_conf             99876278740699974898625433454433437776667874453135741389729999798886454435642899


Q ss_pred             ------------------------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------------------------~  278 (815)
                                                                                                    .
T Consensus       321 ~Sdd~g~~w~~~~~i~~g~saYS~L~~~dg~ig~lYE~~~~~~~~i~f~rlT~el~~ik~v~~~w~~~d~~~~~~~~~~  399 (399)
T d2ah2a2         321 LTDNQRIYNVGQVSIGDENSAYSSVLYKDDKLYCLHEINSNEVYSLVFARLVGELRIIKSVLQSWKNWDSHLSSICTPA  399 (399)
T ss_dssp             EESSSCEEEEEECSCTTCBCCCEEEEEETTEEEEEEEEEETTEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             EECCCCCCCCCCEEECCCCCCCCEEEEECCEEEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             8579984214722855898542576758998999998589970059983687899999999998987547874478899

>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=0  Score=30113.47  Aligned_cols=1  Identities=0%  Similarity=-0.560  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~G~As~~~gttGG~~a~~~~v~~v~t~~el~~~l~~~~~~~P~vI~~~gti~~~~~~~~~~~~~~~~~~   80 (399)
T d1bn8a_           1 ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKD   80 (399)
T ss_dssp             CCGGGCCCCTTSSGGGSTTCCCTTTTCCGGGEEEECSHHHHHHHHCCTTCCSCEEEEECSEEESSBCTTCCBCCHHHHCC
T ss_pred             CCCHHHCCCCCCCEEECCCCCCCCCCCCCCCEEECCCHHHHHHHHHHCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCC
T ss_conf             95211113688750504898677887787746830889999999862369986699986679425665654444454334


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~SNkTIiG~G~~~~i~g~gl~i~a~NVIirnl~i~  160 (399)
T d1bn8a_          81 PEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQ  160 (399)
T ss_dssp             TTCCHHHHHHHTCHHHHCSSCCCSHHHHHHHHHHHHHHHHHEEEECSSEEEEECTTCCEEESCEEEECSEEEEEESCEEE
T ss_pred             CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCEEECCEEEEECCEEEEECEEEE
T ss_conf             33353322234574342034666654322111021435522785279864984589708954579983746999592997


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~s~~VWIDH~t~s~~~~e~~~~~~~~~~~~~~~Dg~lDi~~gs~~VTvS~n  240 (399)
T d1bn8a_         161 DAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYN  240 (399)
T ss_dssp             CCCCSSCEEETTSSSSCEEECCCCSEEEESCEEEEEESCEEECTTCCGGGCCEETTEECCCCCCSEEEETTCEEEEEESC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEECC
T ss_conf             17466666655666556767778658986686589988660267754444544456653333451653146404995774


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~f~~h~k~~L~G~~d~~~~d~g~~~vT~hhN~f~~~~~R~Prvr~g~vHv~NNy~~n~~~~~~~~~~ya~~~~~~a~il~  320 (399)
T d1bn8a_         241 YYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYA  320 (399)
T ss_dssp             EEEEEEECCEECCCTTCGGGTTCCCEEEESCEEEEEEECSSEESSCEEEEESCEEECCTTCSSSCCCCSEEECTTCEEEE
T ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCEEECCCCCCCCCCCEEECCCCCCEEEE
T ss_conf             15687524675678876434687359999327247645686303557888851767787655410002212456746999


Q ss_pred             ------------------------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------------------------~  278 (815)
                                                                                                    .
T Consensus       321 EgN~F~~~~~~~~~~~~~~~~g~~~~~~gn~~~g~~~~~~~~~~~~~~~~~~p~y~y~~~~A~~v~~~V~a~AGAGkl~  399 (399)
T d1bn8a_         321 QNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN  399 (399)
T ss_dssp             ESCEEECTTCCSGGGEEECTTCCBCEEESCEETTEECCHHHHTTCBSCCSCCCCSCCCCCCHHHHHHHHHHHCSTTSCC
T ss_pred             EEEEEECCCCCCCCEECCCCCCCEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf             8148878888655230102688459607847648453676676746565323456533479999998765258976159

>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=0  Score=30046.20  Aligned_cols=1  Identities=0%  Similarity=-0.958  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~kltl~d~~l~~k~Vl~R~D~NvPi~~g~i~d~~RI~~~~pTI~~l~~~~akvil~SH~GRP~g~~~~~~Sl~~~~~~L~   80 (398)
T d1vpea_           1 EKMTIRDVDLKGKRVIMRVDFNVPVKDGVVQDDTRIRAALPTIKYALEQGAKVILLSHLGRPKGEPSPEFSLAPVAKRLS   80 (398)
T ss_dssp             CBCBGGGSCCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHHHH
T ss_pred             CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             98762004847998999931477533995887289999999999999789989998378999998887668799999998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~l~~~v~f~~d~~~~~~~~~~~~l~~g~i~lLEN~Rf~~~E~~n~~~f~k~La~l~DiyVnDAFg~sHR~haS~~gi~~  160 (398)
T d1vpea_          81 ELLGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTRFHPGETKNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIAQ  160 (398)
T ss_dssp             HHHTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSTHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTTTGGGG
T ss_pred             HHHCCEEEEEECCCCHHHHHHHHCCCCCCEEEEHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCCCEECHHH
T ss_conf             63164079850368658899861578876897244442432333247799998605560342543566515875011345


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~lps~aG~l~ekEi~~L~k~l~~~~~P~~aIlGGaKisdKi~~i~~L~~k~D~iiigG~~antfL~a~G~~iG~sl~e~~  240 (398)
T d1vpea_         161 FIPSVAGFLMEKEIKFLSKVTYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEED  240 (398)
T ss_dssp             TSCEEECHHHHHHHHHHHHHHHCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTTHHHHHHHTSCCCTTSCCCGG
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCCCCCHH
T ss_conf             46101147778789876422101467517996157635079999988875022232423789999974997788753412


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~i~~~a~~~~~~i~lP~d~~v~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~aktI~WNGP~G  320 (398)
T d1vpea_         241 KIDLAKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFKQKLSDAKTVVWNGPMG  320 (398)
T ss_dssp             GHHHHHHHHHHHHHTTCEEECCSEEEEESSCSTTCCCEEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSS
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHEEECCCCCCCCCCEEECCCCCCCCCCEEECCCCCHHHHHHHHHCCCCEEEEECCCC
T ss_conf             56789999987665288511001012110003566520213124798765321366500899998745576799974612


Q ss_pred             -----------------------------------------------------------------------------C
Q ss_conf             -----------------------------------------------------------------------------9
Q 003496          278 -----------------------------------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------------------------------~  278 (815)
                                                                                                   .
T Consensus       321 ~fE~~~F~~GT~~l~~~ia~~t~~~~~sIiGGGdT~aai~~~g~~~~f~hvSTGGGA~Le~L~G~~LPgi~aL~~~~a  398 (398)
T d1vpea_         321 VFEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAAAVNKFGLEDKFSHVSTGGGASLEFLEGKELPGIASMRIKKA  398 (398)
T ss_dssp             CTTSGGGCHHHHHHHHHHHHHHHTTCEEEEESHHHHHHHHHTTCGGGSSEEESCHHHHHHHHTSSCCHHHHTSCBCCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCCCCHHHHHHHHCCC
T ss_conf             011662417999999999987238998999178999999972986796089677899999987999718999863549

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=0  Score=30044.98  Aligned_cols=1  Identities=0%  Similarity=0.735  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 m~~~~~~~~~~T~avH~G~~~~~~~~~~av~~PI~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~LE~~la~LE   80 (398)
T d1qgna_           1 MKYASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALE   80 (398)
T ss_dssp             -CCCTTCCSHHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEECCCCEEECCHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHH
T ss_conf             98534579976579968976898888899618830777578089899998743776796443998868999999999982


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 gg~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~t~~v~~E  160 (398)
T d1qgna_          81 GAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFTE  160 (398)
T ss_dssp             TCSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECC
T ss_conf             99348896486468888876303455432322221011333210343456643222442210233432103563179705


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 spsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~  240 (398)
T d1qgna_         161 SPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL  240 (398)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHCCCEEEECCEEECCCCCCCHHHCCCEEEEECHHHCCCCCCEEEHHHCCHHHHHHHHHHH
T ss_conf             74300024321799999886449879961502144557722317989998100015765311100100013343221111


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~G~~l~p~~a~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~  320 (398)
T d1qgna_         241 HHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVD  320 (398)
T ss_dssp             HHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEES
T ss_pred             CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHCCCCCCEEEEEEC
T ss_conf             03677748979999998333477889999889999999999739882005788888993365554325898720466643


Q ss_pred             -----------------------------------------------------------------------------C
Q ss_conf             -----------------------------------------------------------------------------9
Q 003496          278 -----------------------------------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------------------------------~  278 (815)
                                                                                                   -
T Consensus       321 g~~~~a~~f~~~L~l~~~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGlEd~eDLi~Dl~~AL~~i  398 (398)
T d1qgna_         321 GDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDSI  398 (398)
T ss_dssp             SCHHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCSSCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHCCCCCEEEECCCCCCCEEECCCHHCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf             999999999972885626268788761121750113100899999965989297999761089999999999998429

>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Iron-containing alcohol dehydrogenase
domain: NADH-dependent butanol dehydrogenase A (TM0820)
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=0  Score=30040.76  Aligned_cols=1  Identities=0%  Similarity=-0.991  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~M~~f~f~~p~~i~~G~g~~~~l~~~l~~~g~~rvliVt~~~~~~~~g~~~~l~~~L~~~gi~~~~f~~v~~~pt~~~   80 (398)
T d1vlja_           1 HHHMENFVFHNPTKIVFGRGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSK   80 (398)
T ss_dssp             CCCCCCEEECCCCEEEESTTCGGGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHH
T ss_pred             CCCCCCEEEECCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHH
T ss_conf             99888728758986998549999999999965998489998974787731999999999865991999867159989899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 v~~~~~~~~~~~~D~IIavGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~iPTt~gtgse~t~~avi~~~~  160 (398)
T d1vlja_          81 VHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISATGTEMNGNAVITNEK  160 (398)
T ss_dssp             HHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCSSCGGGSSEEEEEETT
T ss_pred             HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEEEECCCCCCEECCCCCEEEECC
T ss_conf             99876411456676688448863112788889886414556776436644367787335414654432113552132001


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~K~~~~~~~~~p~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~E~~~s~~~~~~s~~~a~~~~~~~~~~l~~~~~~~~~  240 (398)
T d1vlja_         161 TKEKYGVSSKALYPKVSIIDPSVQFTLPKEQTVYGAVDAISHILEYYFDGSSPEISNEIAEGTIRTIMKMTERLIEKPDD  240 (398)
T ss_dssp             TTEEEEEECGGGSCSEEEECGGGGGGSCHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             CCCCCEEEECCCCCEEEEEEHHHCCCCCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             25420232012443169985564077740001131266998866531021256434577899988740233664038987


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~ar~~l~~a~~~a~~~~~~~~~~~~~g~~H~l~h~l~~~~~v~HG~~~ai~lp~v~~~~~~~~~~~~~~la~~l~~~~~  320 (398)
T d1vlja_         241 YEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSALYDIAHGAGLAIVFPAWMKYVYRKNPAQFERFAKKIFGFEG  320 (398)
T ss_dssp             HHHHHHHHHHHHHHTSSTTTTTSCSCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHGGGSHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCC
T ss_conf             99987667789988888876530576402111112113455877022024016789999987574689999999738899


Q ss_pred             -----------------------------------------------------------------------------C
Q ss_conf             -----------------------------------------------------------------------------9
Q 003496          278 -----------------------------------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------------------------------~  278 (815)
                                                                                                   .
T Consensus       321 ~~~e~~~~~~~~l~~~~~~lglP~~L~elGi~~~~i~~ia~~a~~~~~~~~npr~~~~~~~~~l~~e~i~~Il~~A~~  398 (398)
T d1vlja_         321 EGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEEDIDKIVDNVMLLVEKNLKPKGASLGRIMVLEREDVREILKLAAK  398 (398)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCCCSTGGGTCCGGGHHHHHHHHHHHHHHTTGGGTCCSCSSSCCCHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             819999999999999999859999989939999999999999996766427987676213334899999999999659

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=100.00  E-value=0  Score=29968.73  Aligned_cols=1  Identities=0%  Similarity=0.071  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~d~k~~~f~T~~ih~G~~~~~~~g~v~pPI~~sST~~~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEgg~~   80 (397)
T d1y4ia1           1 SDCRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEA   80 (397)
T ss_dssp             CCGGGSCHHHHHHHTTCCCCTTTCCSSCCCCCCSCCCCSSHHHHHHHHHSCSSSSCCCTTSCHHHHHHHHHHHHHHTCSE
T ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf             99888981100376798888789992188028888650888999876347768966658988789999999999849962


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~d~~~~~~~i~~~Tklv~~Esp~NP  160 (397)
T d1y4ia1          81 GLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAGKPEEIRAAMRPETKVVYIETPANP  160 (397)
T ss_dssp             EEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTTEEEEEEESSCTT
T ss_pred             CEEEHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHCCCCCCCEEEECCCCCCHHHHHHHCCCCCCEEEECCCCCC
T ss_conf             11106778888887763168998654301012331035431367785575414899989999865877738980487522


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~  240 (397)
T d1y4ia1         161 TLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDI  240 (397)
T ss_dssp             TCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHT
T ss_pred             CEEECCCHHHHHHHHCCCCEEEECCCCCCCCCCCCHHCCCCEEEEEHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf             11003307899886047852870275227154763202897899851351078741465215787889999999999967


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~G~~l~p~~a~l~~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~~  320 (397)
T d1y4ia1         241 TGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGL  320 (397)
T ss_dssp             TCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTHH
T ss_pred             CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCH
T ss_conf             49858989999997471769999999999999999999748996767488878996522223446778759999956999


Q ss_pred             ----------------------------------------------------------------------------C
Q ss_conf             ----------------------------------------------------------------------------9
Q 003496          278 ----------------------------------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------------------------------~  278 (815)
                                                                                                  -
T Consensus       321 ~~~~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGlEd~~DLi~Dl~~AL~~a~~  397 (397)
T d1y4ia1         321 EAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKATF  397 (397)
T ss_dssp             HHHHHHHHTCSSSEECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCCCCEEECCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf             99999997289362305637432032276312654589999997598929799976119999999999999987219

>d1q1la_ d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: Chorismate synthase, AroC
superfamily: Chorismate synthase, AroC
family: Chorismate synthase, AroC
domain: Chorismate synthase, AroC
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=0  Score=29967.36  Aligned_cols=1  Identities=0%  Similarity=0.071  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~r~ttfGESHG~aig~vIdG~PaG~~id~~~i~~~L~RRrpG~~~~~t~R~E~D~veilSGv~~g~TtG~PI~~~I   80 (397)
T d1q1la_           1 SLRYLRFLTAGESHGKGLTAILEGIPANLPLSEEEINHELRRRQRGYGRGGRMKIEKDTAEILSGVRFGKTLGSPIALFI   80 (397)
T ss_dssp             CCSSCEEEEECCTTSSEEEEEEECCCBTCBCCHHHHHHHHHHHHTTCC------CCSCCEEEEESEETTEECSSCEEEEE
T ss_pred             CCCEEEEECCCCCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECEECCEECCCCEEEEE
T ss_conf             96569996034578984489980508488848999999985689899999866799984799145158980678559999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~N~D~~~~~y~~~~~~~~~~~~~~~~~pRPGHAD~~~~~KYg~~d~r~gggRsSaReTa~rVaAGaIAk~~L~~~gI~v~  160 (397)
T d1q1la_          81 RNRDWENWKEKMAIEGEPSPSVVPFTRPRPGHADLSGGIKYNQRDLRNILERASARETAARVAVGAVCKKFLSEFGIKIG  160 (397)
T ss_dssp             ECSCC-------------------------------CTTTTTCSSTHHHHHHHSGGGHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred             ECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf             87876654543322356205554440488887536778874576666766514788999999999999999998498788


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 s~v~~IG~i~~~~~~d~~~~~~~~~~~~~~~~~~~s~vrc~d~~~~~~m~~~I~~~r~~gDSvGG~ve~~~~gvP~GLGe  240 (397)
T d1q1la_         161 SFVVSIGQKEVEELKDKSYFANPEKLLSYHEKAEDSELRIPFPEKDEEFKTYIDEVKEKGESLGGVFEVFALNVPPGLGS  240 (397)
T ss_dssp             EEEEEETTEECGGGSSGGGGGCHHHHHHHHHHHTTSTTCCSCGGGHHHHHHHHHHHHTTTCCBCEEEEEEEESCCTTCSC
T ss_pred             EEEEEECCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC
T ss_conf             89999866752434555445780233556887650750357656999999999999856886440699999658887667


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 pv~~ddkLda~LA~AlmSIpAvKgvEfG~Gf~~a~~~GSe~nD~~~~~~~~~~~~~tN~aGGilGGISnG~pI~~rva~K  320 (397)
T d1q1la_         241 HIQWDRRIDGRIAQAMMSIQAIKGVEIGLGFEAARRFGSQVHDEIGWSEGKGYFRHSNNLGGTEGGITNGMPIVVRVAMK  320 (397)
T ss_dssp             SSSGGGCHHHHHHHHHHTSTTEEEEEETTGGGGGGSBGGGTCCCEEEETTTEEEESCCTTTTEETTEECSSCEEEEEEEC
T ss_pred             CCCCCCCCHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC
T ss_conf             73444442489999875040144301265166776630235565313478873355667764245765886089999978


Q ss_pred             ----------------------------------------------------------------------------C
Q ss_conf             ----------------------------------------------------------------------------9
Q 003496          278 ----------------------------------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------------------------------~  278 (815)
                                                                                                  .
T Consensus       321 P~sSI~~~q~Tvd~~~~e~~~~~~gRhDpcivpra~~VvEAm~alvlaD~~L~k~g~d~~~~~~~~~~~y~~~~~~~  397 (397)
T d1q1la_         321 PIPTLKNPLRSVDIETKEEMKAGKERTDIVAVPAASVVGEAMLAIVLADALLEKLGGDFMEEVKKRFEDYVNHVKSF  397 (397)
T ss_dssp             CCCC------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHCCSBHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             86446775636237898777502799898578763389999999999999999857984999999999999997529

>d1vkoa1 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosphate synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Myo-inositol 1-phosphate synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=0  Score=29966.76  Aligned_cols=1  Identities=0%  Similarity=-1.489  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~v~s~~v~y~~~~i~~~y~y~~t~v~~~~~~~~v~p~~~~~~f~t~~~vpklGVmLVG~GGnngTT~~aGv~Anr~g   80 (397)
T d1vkoa1           1 KRLIVESPNVKLEDGVLESRFTYRKNHFEHRADGLHVTPKEHDYSFKTVLKPRKTGLLLVGLGGNNGSTAVGSIFANQYA   80 (397)
T ss_dssp             CCCCCCCTTEEEETTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECSCCCEEEEEETTTSHHHHHHHHHHHHHHTT
T ss_pred             CCEEEECCCEEECCCEEEEEEEECCEEEEEECCCEEEEEEEEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf             94488399738737558999886104999817935998767778998416688258998438840888999999998758


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 L~w~tk~G~~~an~~GSltq~stirlG~~~~~~~~~~~P~kd~lPl~~p~DiVfGGWDI~~~nL~eAa~rA~VLd~~ll~  160 (397)
T d1vkoa1          81 MTWRTKEGHSQANYFGSVTQTATVHLGYDSATQNQIFVPFKDIVPILSPNDLIISGWDISDSNLYEAMGRAKVFEPELQE  160 (397)
T ss_dssp             CEEEETTEEEECCCTTCHHHHCEEEEEEETTTTEEEEEEGGGTSCCCCGGGEEEEEECSSCCCTTHHHHHHTCSCHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCHHHHCEEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHCCCCCHHHHH
T ss_conf             97546677405886351443033575135789873356376517889821168944469999889999875999989999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~l~~~L~~i~P~psv~~pdfia~nq~~ra~nv~~g~~k~e~ve~Ir~DIr~Fk~~~~ldrVVVlwtAsTEr~~~~~~~v~  240 (397)
T d1vkoa1         161 KLRPFMEPIVPLPSIYYPDFIASNQGDRANNVIPGDNKLEHLEHIRADIRKFKQEHELECVIVLWTANTERYTDVRQGLN  240 (397)
T ss_dssp             HHHHHHTTCCCBCBCCCGGGSCGGGGGGCCSBCCSSCHHHHHHHHHHHHHHHHHHHTCSEEEEEECSCCCCCCCCCTTTT
T ss_pred             HHHHHHHCCCCCCCCCCCHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf             99999860865542107277775135200151358889999999999999999974997699998158777777761200


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~t~e~l~~ai~~n~~eIsPS~lYA~AAi~eG~pyiNgsPq~t~vPal~eLA~~~~v~iaG~DfKTLLaspliLDl~ll~e  320 (397)
T d1vkoa1         241 ATADEIMESIRVNEDEVSPSNIFAVASILEGAHYINGSPQNTLVPGLIELAERHKVFVGGDDFKSLLASPLIYDLAILTE  320 (397)
T ss_dssp             SSHHHHHHHHHTTCSSCCHHHHHHHHHHHTTCEEEECSSSCCCCHHHHHHHHHHTCCEECSCBCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHH
T ss_conf             16999999986699878859999999997599623699755666459999986199665257898755188886999996


Q ss_pred             ----------------------------------------------------------------------------C
Q ss_conf             ----------------------------------------------------------------------------9
Q 003496          278 ----------------------------------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------------------------------~  278 (815)
                                                                                                  .
T Consensus       321 l~~Ri~~k~~~~~~~~~~Vls~LS~~~KaPl~~~g~~~vn~l~kQr~~l~N~lR~~~Gl~p~~~m~lEy~~~lp~~k  397 (397)
T d1vkoa1         321 LASRVSYKVDDEYKPFHSVLSILSLLLKAPVVPPGTPISNAFMRQFSTLTKLVTALAGFPSDTDMQIEFFTQLPAAK  397 (397)
T ss_dssp             HHTTEEEESSSSEECCCSBCGGGGGGBSSCCCSTTSCCCCCHHHHHHHHHHHHHHHHTCCCCTTSCGGGTSCCCCCC
T ss_pred             HHHEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCC
T ss_conf             64178862254004752077776665268888999866028899999999999998299977754303310055579

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=29961.40  Aligned_cols=1  Identities=0%  Similarity=0.236  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~~~~~~~~~dpi~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia   80 (397)
T d3tata_           1 MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIA   80 (397)
T ss_dssp             CCCCCCCCCCCTTTTHHHHHHHSCCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             96557778999488999997268998948850787738889988868999999999717666787898555899999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~  160 (397)
T d3tata_          81 PLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRF  160 (397)
T ss_dssp             HHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCH
T ss_pred             HHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHCCCEEEEEECCHHHCCCCCH
T ss_conf             99852259767767689845760377888988776533799833662667666279999869979997465142256420


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i  240 (397)
T d3tata_         161 NDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPAL  240 (397)
T ss_dssp             HHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCE
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCCEECCHHHHHHHHHHHHHCCEEEEEEHHHHHHCCCCCCCCHHHHHHHHCCCCEE
T ss_conf             77899864066552899826899997841788999999999853694699415531001697533114554442277359


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (397)
T d3tata_         241 VSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRIL  320 (397)
T ss_dssp             ECBCCHHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             98447665333576512110011678999988888887752256666078999999860788889999988889999999


Q ss_pred             ----------------------------------------------------------------------------C
Q ss_conf             ----------------------------------------------------------------------------9
Q 003496          278 ----------------------------------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------------------------------~  278 (815)
                                                                                                  -
T Consensus       321 ~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~e~~~~L~~e~~V~l~~g~Ri~~a~~~~~~i~~~~~ai~~v~  397 (397)
T d3tata_         321 AMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAVM  397 (397)
T ss_dssp             HHHHHHHHTTTTTCTTSCTTHHHHCCSSBCCCCCCHHHHHHHTTTTCEECCSSSCCBTTSCCTTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCHHHHHHHHHHCCEEECCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf             99999999999848998648876898417841919999999999599995798879852599889999999999869

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=29959.49  Aligned_cols=1  Identities=0%  Similarity=-0.194  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~p~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~   80 (397)
T d1vjva_           1 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPV   80 (397)
T ss_dssp             CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCH
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf             98789988888884079999999998089999999817741011346654322589999999999999985898714879


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  160 (397)
T d1vjva_          81 VLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGDKFSEDFRIQFKTTIKDTANDNDITVKENESDSKLQ  160 (397)
T ss_dssp             HHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTHHHHTTTCEEEEEEEEETTEEEEEEEECCCEESCEE
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCEEEEEEEECCCCCCCCEECCEEEEEEE
T ss_conf             99999999704322465566634126689999999999987733213554155120058862336644213540211233


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~l~i~l~R~~~~~~~~~~~k~~~~~~~~~~ld~~  240 (397)
T d1vjva_         161 CHISGTTNFMRNGLLEGLNEKIEKRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVA  240 (397)
T ss_dssp             ECCCTTCCBHHHHHHHHHEEC---------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECG
T ss_pred             EEECCCEEECHHHHHHHHHHHHCCCCCCCCCCCEEEEECEEECCCCEEEEEEEEEEECCCCCCCCCCCCEEECCCEEECC
T ss_conf             46326412202778764366540534555787523220423238952377766654214556110327625267077525


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (397)
T d1vjva_         241 DMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEK  320 (397)
T ss_dssp             GGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHCCCHHCCCCHHCCCHHHHCCCCCCCCCCC
T ss_conf             32110233320015676644331111477777640468766532234200011000023100110001000135632123


Q ss_pred             ----------------------------------------------------------------------------C
Q ss_conf             ----------------------------------------------------------------------------9
Q 003496          278 ----------------------------------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------------------------------~  278 (815)
                                                                                                  -
T Consensus       321 ~~~~~~~Y~L~aVv~H~G~~~~~GHY~ay~r~~~~~~~W~~~nD~~V~~v~~~~V~~~~~~~~~~~aYlLfY~r~~~  397 (397)
T d1vjva_         321 GENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFGL  397 (397)
T ss_dssp             TBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEETTC
T ss_pred             CCCCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCCCEECCHHHHHHHHCCCCCCEEEEEEEEECCC
T ss_conf             67899888999999996599999682899989999898999989877799889998750899888189999996489

>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Bacterial glucoamylase C-terminal domain-like
domain: Bacterial glucoamylase, C-terminal domain
species: Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]

Probab=100.00  E-value=0  Score=29958.03  Aligned_cols=1  Identities=0%  Similarity=-0.559  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~~~~~~~~~~~~s~~~lk~~~~~~~~GaiiAsptt~~~e~~~~~~~~~Y~y~W~RDaa~~~~al~~~G~~~~a~~~l~~   80 (397)
T d1lf6a1           1 NNFNGKANSLYYNSMMILKASEDKTNKGAYIASLSIPWGDGQRDDNTGGYHLVWSRDLYHVANAFIAAGDVDSANRSLDY   80 (397)
T ss_dssp             CCTTTTCCHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBSBSCCGGGSBCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99873799999999999998047789964897677886655689889997057272599999999985997999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 l~~~~~~~G~~~~~~~~~G~~~~~~~q~D~~g~~i~a~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~lWEe~~g~~~~t  160 (397)
T d1lf6a1          81 LAKVVKDNGMIPQNTWISGKPYWTGIQLDEQADPIILSYRLKRYDLYDSLVKPLADFIIKIGPKTGQERWEEIGGYSPAT  160 (397)
T ss_dssp             HHHHHHHHSSCCSCBCTTSCBCCCCCCHHHHHHHHHHHHHTTCGGGTTTTHHHHHHHHHHHCSSBSSCTTSSCCBBCHHH
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH
T ss_conf             99995325877887886798645677776699999999999753406899999999999838887655454457864203


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~aL~~~a~la~~~g~~~~a~~~~~~A~~i~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~  240 (397)
T d1lf6a1         161 MAAEVAGLTCAAYIAEQNKDYESAQKYQEKADNWQKLIDNLTYTENGPLGNGQYYIRIAGLSDPDADFMINIANGGGVYD  240 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHEESSCSSTTSCEECSCBSSSCTTSCCEEEETTTTEEEE
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             67799999999999886088157999999999999999983428356610243200146666753110001245434456


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~lDasll~~~~~g~~~~~d~~~~~tl~~i~~~l~~~~g~~~~~~RY~~D~y~~~~~~~~~~~~~~g~pW~i~T~~~a  320 (397)
T d1lf6a1         241 QKEIVDPSFLELVRLGVKSADDPKILNTLKVVDSTIKVDTPKGPSWYRYNHDGYGEPSKTELYHGAGKGRLWPLLTGERG  320 (397)
T ss_dssp             GGGCCCGGGGHHHHTTSSCTTCHHHHHHHHHHHHHSEEEETTEEEECSSTTCCCSCSBTTBCCSSSSCCCBBHHHHHHHH
T ss_pred             CCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             67776778763110378788878999999999987166777666654454555343577677667868754999999999


Q ss_pred             ----------------------------------------------------------------------------C
Q ss_conf             ----------------------------------------------------------------------------9
Q 003496          278 ----------------------------------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------------------------------~  278 (815)
                                                                                                  .
T Consensus       321 ~~~~~~g~~A~~~l~~~~~~~~~~G~l~E~~d~~tG~~~g~a~plaWS~A~~i~~~~~l~~~~~~~~~~~~~~~~~~  397 (397)
T d1lf6a1         321 MYEIAAGKDATPYVKAMEKFANEGGIISEQVWEDTGLPTDSASPLNWAHAEYVILFASNIEHKVLDMPDIVYKRYVA  397 (397)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHSCTTSCCCSCBCTTTCCBCSSCSSCHHHHHHHHHHHHHHHHTSCTTSCHHHHHHHTC
T ss_pred             HHHHHCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCC
T ss_conf             99997117999999999976688886350046989984899954788999999999998649976666788887309

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=100.00  E-value=0  Score=29888.75  Aligned_cols=1  Identities=0%  Similarity=-1.922  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~l~~l~~~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FsSndYLGL~~~p~v~~a~~~al~~yG~gs~   80 (396)
T d2bwna1           1 DYNLALDKAIQKLHDEGRYRTFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSG   80 (396)
T ss_dssp             CHHHHHHHHHHHHHHTTCCCCCCEEEECTTSTTEEEEECTTSCEEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCC
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             96799999999999859986342012246788740474027998289998852102768999999999999999589864


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~Sr~~~G~~~~h~~LE~~lA~~~g~e~all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~H  160 (396)
T d2bwna1          81 GTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRH  160 (396)
T ss_dssp             SBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEHHHHHHCCCHHHHCCCCCCEEEEC
T ss_conf             55244587449999999999974998515540113778889998760367984310534223000143046667337632


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 nd~~~l~~l~~~~~~~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di  240 (396)
T d2bwna1         161 NDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDI  240 (396)
T ss_dssp             TCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSE
T ss_pred             CHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCEEEECCCEEEEEECCCCCCCHHHCCCCEEEEE
T ss_conf             36877666776405667616999752367644466176899865424066501210110221666662233187312124


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~gTlsKa~g~~Gg~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~  320 (396)
T d2bwna1         241 FNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL  320 (396)
T ss_dssp             EEEESSSTTCSCCEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             53124655533554353268999998751213453136757778899999997631207899999999999999889866


Q ss_pred             ---------------------------------------------------------------------------C
Q ss_conf             ---------------------------------------------------------------------------9
Q 003496          278 ---------------------------------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------------------------------~  278 (815)
                                                                                                 .
T Consensus       321 g~~~~~~~spIvpv~ig~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~iw  396 (396)
T d2bwna1         321 GMPIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLW  396 (396)
T ss_dssp             TCCBCCCSSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf             9986899999799996999999999999999689899987899689997269998576699999999999999859

>d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: 1,4-alpha-glucan branching enzyme, central domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=29884.18  Aligned_cols=1  Identities=0%  Similarity=-0.958  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~iYe~~~~~f~~~~~~~~~g~~~gi~~klidyl~~LGv~~iwl~Pi~~~~~~~~hGY~~~d~~   80 (396)
T d1m7xa3           1 VVQTEERKKANQFDAPISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLY   80 (396)
T ss_dssp             CCCCHHHHHHHSTTSCCEEEEECTTSSCBCTTTCCBCCHHHHHHHHHHHHHHTTCSEEEESCCEECSCGGGTTSSCSEEE
T ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             96641024578889986799772571477899998879999999899999982998899698887899899896867587


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~vdp~~Gt~~d~~~LV~~aH~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (396)
T d1m7xa3          81 APTRRFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDDFALAEFDGTNLYEHSDPREGYHQDWNTLIYNYGRREVSNFL  160 (396)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHTTCEEEEEECTTSCCCSTTSSTTGGGSCSSBCC-----------CCCBCTTSHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             71824289899999999985420333201143446786555554567863235678778778877754467772358999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~gvDG~R~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  240 (396)
T d1m7xa3         161 VGNALYWIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGV  240 (396)
T ss_dssp             HHHHHHHHHHSCCCEEEECCSHHHHCC--------------CTTCCHHHHHHHHHHHHHHHHSSTTCEEEECCSSCCTTT
T ss_pred             HHHHHHHHHHHCCCCEEEECHHHHCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf             99999889985786323311423122010011111111103566550289999999999863479946997521787532


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (396)
T d1m7xa3         241 SRPQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLTFGILYNYTENFVLPLSHDEVVHGKKSILDRMPGDAWQK  320 (396)
T ss_dssp             TBCTTTTBSCCSEEECHHHHHHHHHHHHSCGGGGGGCTHHHHGGGTTTTTSCEEEEECGGGSSTTSCCHHHHSCSSHHHH
T ss_pred             CCCCCCCCCCHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             22000354320334211022344430000013444422223100111055521222344322457774223688877899


Q ss_pred             ---------------------------------------------------------------------------C
Q ss_conf             ---------------------------------------------------------------------------9
Q 003496          278 ---------------------------------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------------------------------~  278 (815)
                                                                                                 .
T Consensus       321 ~~~~~la~a~llt~pG~P~IYyGdEiG~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~~L~~lR~~~paL~~~~~~  396 (396)
T d1m7xa3         321 FANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNHDASLDWHLLEGGDNWHHGVQRLVRDLNLTYRHHKAMHELDFD  396 (396)
T ss_dssp             HHHHHHHHHHHHHSSSEEEEETTTTTTCSSCCCTTSCCCGGGGCSSCCHHHHHHHHHHHHHHHHTTCGGGTSCTTS
T ss_pred             HHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCC
T ss_conf             9999999999998178547056512487899998887782111476534279999999999999739876460789

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=29883.89  Aligned_cols=1  Identities=0%  Similarity=0.303  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~f~~~~~~p~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~   80 (396)
T d2q7wa1           1 MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQE   80 (396)
T ss_dssp             -CTTCCCCCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             96445547998599999998466899968830787658889989988999999999618988988997677999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~  160 (396)
T d2q7wa1          81 LLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFD  160 (396)
T ss_dssp             HHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHH
T ss_pred             HHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCC
T ss_conf             99861698666442013213417899999999886315650899816888430599998599067245434456542210


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~  240 (396)
T d2q7wa1         161 ALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIV  240 (396)
T ss_dssp             HHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEE
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCC
T ss_conf             57778988515838999568849949336889987788877048819998615354346986674286654562344211


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (396)
T d2q7wa1         241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQR  320 (396)
T ss_dssp             EEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             33564434445777442446606899999865556665504445787899999999853913678999999999999999


Q ss_pred             ---------------------------------------------------------------------------C
Q ss_conf             ---------------------------------------------------------------------------9
Q 003496          278 ---------------------------------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------------------------------~  278 (815)
                                                                                                 -
T Consensus       321 ~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l~~e~~~~L~~e~gV~~~~g~Ri~~a~l~~~~i~~~~~ai~~v~  396 (396)
T d2q7wa1         321 MRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL  396 (396)
T ss_dssp             HHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCHHHHHHHHHHCCEEECCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf             9999999999828988741564897179951879999999999689997799879952898788999999999869

>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}

class: Multi-domain proteins (alpha and beta)
fold: Phase 1 flagellin
superfamily: Phase 1 flagellin
family: Phase 1 flagellin
domain: Phase 1 flagellin
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=0  Score=29819.63  Aligned_cols=1  Identities=0%  Similarity=-1.257  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~i~gl~qa~~N~~d~~s~lqtae~al~~~~~iL~r~reLavqaan~t~~~~dr~ai~~E~~~l~~ei~~ia~~T~fng~~   80 (395)
T d1io1a_           1 NIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVK   80 (395)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEECCCC
T ss_conf             97138899998999999999999999999999999999999850578999999999999999999999999737028802


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 Ll~Gs~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (395)
T d1io1a_          81 VLAQDNTLTIQVGANDGETIDIDLKQINSQTLGLDTLNVQQKYKVSDTAATVTGYADTTIALDNSTFKASATGLGGTDQK  160 (395)
T ss_dssp             TTTSCEEEEEECSSSTTCEEEEEECCCSTTTTTCTTCCCCCCCEEEEEECCCCSEEEEEEECBGGGSTTTCGGGCSSEEE
T ss_pred             CCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             23556725897247875058997123310001121100222322333211122222211013443222112232232100


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (395)
T d1io1a_         161 IDGDLKFDDTTGKYYAKVTVTGGTGKDGYYEVSVDKTNGEVTLAGGATSPLTGGLPATATEDVKNVQVANADLTEAKAAL  240 (395)
T ss_dssp             ECSSEEEETTTTEEEEEEEEETCSSCCEEEEEEECTTTCBEEESTTCCSCCTTSSCTTCCEEESEEEEEGGGCHHHHHHH
T ss_pred             CCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             01221111101110000011222221000110000133210011222111223444333210001000000120011100


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (395)
T d1io1a_         241 TAAGVTGTASVVKMSYTDNNGKTIDGGLAVKVGDDYYSATQNKDGSISINTTKYTADDGTSKTALNKLGGADGKTEVVSI  320 (395)
T ss_dssp             HHTTCCSCEEEEEEEEECTTSCEEEEEEEEEETTEEEEEEECTTSCEEECBCCBBCSSSSCBCCBEEEESTTSCEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEEC
T ss_conf             00012233222221113421100145532112221001101222332123322222200233102222234341035412


Q ss_pred             --------------------------------------------------------------------------C
Q ss_conf             --------------------------------------------------------------------------9
Q 003496          278 --------------------------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------------------------~  278 (815)
                                                                                                +
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~i~v~t~~~A~~Al~~iD~Ai~~v~~~Ra~lGA~qNRle~ti~NL~~~~~N~~aar  395 (395)
T d1io1a_         321 GGKTYAASKAEGHNFKAQPDLAEAAATTTENPLQKIDAALAQVDTLRSDLAAVQNRFNSAITNLGNTVNNLTSAR  395 (395)
T ss_dssp             TTEEEEHHHHTTCBTTTSCCCCCCCCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             551021123455332222102466488899999999999999999998755698868999998999999998519

>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=29813.92  Aligned_cols=1  Identities=0%  Similarity=-1.489  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~ld~~g~~~~~~~~~~ls~e~l~~~Yr~M~~~R~~e~~~~~l~~~G~i~~   80 (395)
T d2bfda1           1 KPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISF   80 (395)
T ss_dssp             CCCCTTCCCCCCSSCCCCCCCCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99899987756655455787667888806778999999884236998999999999999999999999999996897012


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~GqEA~~vg~~~al~~~D~~~~~yR~h~~~la~G~~~~~~~ael~g~~~g~~~Grggs~H~~~~~~~~~~~~~ivg  160 (395)
T d2bfda1          81 YMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLA  160 (395)
T ss_dssp             CCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTT
T ss_pred             CCCCCCHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             50898869999999997697780134445367244431789999998740035764456654443323346311344334


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~yaist~~~~~~~~~~i~~ra~~  240 (395)
T d2bfda1         161 TQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPG  240 (395)
T ss_dssp             THHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGG
T ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHCCHHHHHHHHC
T ss_conf             55107888888765037654443114788754113889999986237743799986133422200210011168876310


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~gi~~~~vDG~Dv~aV~~a~~~A~~~~R~g~gP~lIE~~TyR~~~Hs~~DD~~~YR~~~Ei~~w~k~DdPi~~~~~~Li~  320 (395)
T d2bfda1         241 YGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLS  320 (395)
T ss_dssp             GTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC-------------------CCHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             35541688337389888888876433312687537887663588887767732466889999988549899999999998


Q ss_pred             --------------------------------------------------------------------------C
Q ss_conf             --------------------------------------------------------------------------9
Q 003496          278 --------------------------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------------------------~  278 (815)
                                                                                                .
T Consensus       321 ~g~~s~ee~~~i~~e~~~eV~~A~~~A~~~p~P~~~~l~~~VYae~p~~l~eq~~~~~~~~~~~~e~~~~~~~~~  395 (395)
T d2bfda1         321 QGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHFDK  395 (395)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHHHHHSCBCCGGGGSTTSSSSCCHHHHHHHHHHHHHHHHHGGGSCGGGBCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCC
T ss_conf             799999999999999999999999999858997989998450159997799999999999996725388455349

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=100.00  E-value=0  Score=29809.31  Aligned_cols=1  Identities=0%  Similarity=-1.425  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~~~   80 (395)
T d2py6a1           1 DPLAMNDSFLAAADALAVDPMFGIPANVREVIARRGNATRLVILGTKGFGAHLMNVRHERPCEVIAAVDDFRYHSGELYY   80 (395)
T ss_dssp             CGGGHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHGGGCEEEEECSSSTHHHHHSCSSSCSSEEEEEECTTTTTSCCEET
T ss_pred             CCHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHCCCEEC
T ss_conf             94116778887788754472320868899999850897528997686458999999987794699996684232286533


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 g~pv~s~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (395)
T d2py6a1          81 GLPIISTDRFTELATHDRDLVALNTCRYDGPKRFFDQICRTHGIPHLNFEQAVRAFGLQGNVDYRVDDWGADIVRNIPAF  160 (395)
T ss_dssp             TEEEECHHHHHHHHHTCTTEEEEECCCSHHHHHHHHHHHHHTTCCEEEHHHHHHHTTCTTSSCGGGSCCHHHHHHTHHHH
T ss_pred             CEEEECHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             55751678864344226857999813641122589999876598400157778873774234402444589999869999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~L~D~~S~~~~~~~l~~rl~~d~~~~~~~~~~~~~~YF~~~i~~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~k  240 (395)
T d2py6a1         161 QTLAQRLADDYSVQTLYAVLNFHLTCEPEYYHEVERPYSTLYFRSGLLRFSDSEKMVDCGASIGESLAGLIGVTKGKFER  240 (395)
T ss_dssp             HHHHHHCSSHHHHHHHHHHHHHHHHCCTHHHHHHCCCGGGTTTSSSSCCCCSSCEEEEETCTTSHHHHHHHHHHTSCCSE
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCE
T ss_conf             99998713776599999999998639989985135758776543404676799899997758778899999966899998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 V~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~~alsd~~~~~~f~~~~~~~s~~~~~~~~~~~~~~V~~~tLD~l~~~  320 (395)
T d2py6a1         241 VWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGENTIRVPFNHEGGHGGFVKPADADHEPADLIDVRPIDDIIDD  320 (395)
T ss_dssp             EEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECSSCEEEEC--------------------CEEEEECHHHHCSS
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEHHHHCCC
T ss_conf             99993987999999999985622255543999998961661389985179865310135667775189998788995378


Q ss_pred             --------------------------------------------------------------------------C
Q ss_conf             --------------------------------------------------------------------------9
Q 003496          278 --------------------------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------------------------~  278 (815)
                                                                                                .
T Consensus       321 ~id~IKIDVEG~E~~VLkGa~~~Lk~~kPiI~IEiyh~~~d~~~i~~~L~~l~~~Y~~~lR~h~~~~~d~vlY~~  395 (395)
T d2py6a1         321 APTFIKMDIEGSELSALKGARRAISEHKPKLAISAYHRSTDLLDLTNYILSIRPDYQIGLRHHTPDRWDTCLYFY  395 (395)
T ss_dssp             CCSEEEECCSSCHHHHHHTTHHHHHHHCCEEEEECCSSTTHHHHHHHHHHHHCTTCCEEEEECSSSSCCEEEEEC
T ss_pred             CCCEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEC
T ss_conf             998899968998799999789999867987999995257659999999998636974999668987501489859

>d1aora1 a.110.1.1 (A:211-605) Aldehyde ferredoxin oxidoreductase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: Aldehyde ferredoxin oxidoreductase, C-terminal domains
superfamily: Aldehyde ferredoxin oxidoreductase, C-terminal domains
family: Aldehyde ferredoxin oxidoreductase, C-terminal domains
domain: Aldehyde ferredoxin oxidoreductase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=0  Score=29807.92  Aligned_cols=1  Identities=0%  Similarity=-0.726  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 vad~~~f~~~~~~~~~~~~~~p~~~~~l~~~GT~~~~~~~~~~g~lP~~Nf~~g~~~~a~~isge~~~~~~~~r~~~C~~   80 (395)
T d1aora1           1 IADKQKFMLVVREKVNKLRNDPVAGGGLPKYGTAVLVNIINENGLYPVKNFQTGVYPYAYEQSGEAMAAKYLVRNKPCYA   80 (395)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHSHHHHTHHHHHCGGGHHHHHHHTTCCCBTTTTBSCCTTGGGGSHHHHHHHTEEEEECCTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCHHCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHHCCCCCCCCC
T ss_conf             98989999999999999982970415321109299999998769877488888889971542899999986146999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 Cpi~C~~~~~~~~~~~~~gpEYEt~~a~Gs~~Gi~d~~~v~~~n~l~d~~GlDtIs~G~~ia~amE~~e~Gll~~e~~gd  160 (395)
T d1aora1          81 CPIGCGRVNRLPTVGETEGPEYESVWALGANLGINDLASIIEANHMCDELGLDTISTGGTLATAMELYEKGHIKDEELGD  160 (395)
T ss_dssp             CSSCCEEEEEETTTEEEECCCHHHHHHHTGGGTCCCHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHTTSSCHHHHTT
T ss_pred             CCCCCCCEEEECCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHCCC
T ss_conf             98674834770688753687730110300124899999999999999996813887868999999999779887242066


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~l~wGd~e~~~~li~~IA~r~g~G~~LA~G~~~aae~~G~~~~a~~vkg~e~p~~dpr~~~g~~l~yat~~~G~~H~~  240 (395)
T d1aora1         161 APPFRWGNTEVLHYYIEKIAKREGFGDKLAEGSYRLAESYGHPELSMTVKKLELPAYDPRGAEGHGLGYATNNRGGCHIK  240 (395)
T ss_dssp             SCCCCTTCTHHHHHHHHHHHTTCTTHHHHTTCHHHHHHHTTCGGGCCEETTEECCSCCGGGCHHHHHHHHHCTTSSCSGG
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCHHHEEECCCCCCHHHH
T ss_conf             77879999999999999998467417888223999999959823546744777443377653132311001577640233


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~e~~g~~~~~dp~~~~e~k~~~~~~~q~~~~~~dslg~C~F~~~~~~~~~~~~~~~avTG~~~t~e~l~~~geRi  320 (395)
T d1aora1         241 NYMISPEILGYPYKMDPHDVSDDKIKMLILFQDLTALIDSAGLCLFTTFGLGADDYRDLLNAALGWDFTTEDYLKIGERI  320 (395)
T ss_dssp             GCTHHHHTTCSSSCCCTTCCSHHHHHHHHHHHHHHHHHHHHTCCGGGGTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             HCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             22244754389765785514379999999999999996013434413667999999999997538899999999999999


Q ss_pred             --------------------------------------------------------------------------C
Q ss_conf             --------------------------------------------------------------------------9
Q 003496          278 --------------------------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------------------------~  278 (815)
                                                                                                .
T Consensus       321 ~~l~R~fN~r~G~~~~~dD~lP~r~~~ep~~~G~~kg~~~~~e~~l~~YY~~rGWd~~G~Pt~e~L~~LgL~d~~  395 (395)
T d1aora1         321 WNAERLFNLKAGLDPARDDTLPKRFLEEPMPEGPNKGHTVRLKEMLPRYYKLRGWTEDGKIPKEKLEELGIAEFY  395 (395)
T ss_dssp             HHHHHHHHHHHTCCHHHHSCCCHHHHHSCCCSSTTTTCCCCHHHHHHHHHHHHTCCTTSCCCHHHHHHHTCGGGC
T ss_pred             HHHHHHHHHHCCCCHHHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCC
T ss_conf             999999999747983654569887724888878777876789999999999839898898799999976891339

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=0  Score=29807.31  Aligned_cols=1  Identities=0%  Similarity=-0.625  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~~~~~~l~v~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllR   80 (395)
T d1nw1a_           1 GMKELLSTMDLDTDANTIPELKERAHMLCARFLGGAWKTVPLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLR   80 (395)
T ss_dssp             CHHHHHTTCCTTCCGGGCHHHHHHHHHHHHHHHCTHHHHCCGGGEEEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEE
T ss_pred             CHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCEEEE
T ss_conf             94445045654566543615899999999986711026899301699991785334348999688775445789817999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 i~g~~~~~idr~~E~~i~~~ls~~gl~Pkll~~~~~g~I~efi~g~~l~~~d~~~~~~~~~iA~~La~lH~~~~~~~~~~  160 (395)
T d1nw1a_          81 VYFNPETESHLVAESVIFTLLSERHLGPKLYGIFSGGRLEEYIPSRPLSCHEISLAHMSTKIAKRVAKVHQLEVPIWKEP  160 (395)
T ss_dssp             EECSCCCHHHHHHHHHHHHHHHHTTSSSCEEEEETTEEEECCCCEEECCTTGGGSHHHHHHHHHHHHHHTTCCCSSCCSS
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             65996116589999999999975799980899818956999734554883331465555999999999850332236675


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~l~~~~~~lv~CHnDL~~~NiL~~~~~~~~~  240 (395)
T d1nw1a_         161 DYLCEALQRWLKQLTGTVDAEHRFDLPEECGVSSVNCLDLARELEFLRAHISLSKSPVTFCHNDLQEGNILLPKASSGNI  240 (395)
T ss_dssp             CHHHHHHHHHHHHHHHHSCTTCCEECCGGGSCCEECHHHHHHHHHHHHHHHTTCCCCEEEECSCCCGGGEEEEC------
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCCCCCC
T ss_conf             42888999999765431237776434555302444499999999999987430369846885578856376536433222


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lID~EYa~~n~~~fDian~f~E~~~~y~~~~~~~~~~~~~~~ps~e~~~~fi~  320 (395)
T d1nw1a_         241 RMPSLSDETQALGNSLSAFNPADPRLVLIDFEYASYNYRAFDFANHFIEWTIDYDIDEAPFYKIQTENFPENDQMLEFFL  320 (395)
T ss_dssp             ------------------------CCEECCCTTCEEEEHHHHHHHHHHHTTEECCCSSTTSCEECGGGSCCHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             34553100023444322356888827998542367885066599999997055677666532134234939999999999


Q ss_pred             --------------------------------------------------------------------------C
Q ss_conf             --------------------------------------------------------------------------9
Q 003496          278 --------------------------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------------------------~  278 (815)
                                                                                                .
T Consensus       321 ~Yl~~~~~~~~~~~~~~~~~l~~~v~~~~~~s~l~W~lW~~iq~~~~~~~fDy~~Y~~~Rl~~y~~~k~~l~~~~  395 (395)
T d1nw1a_         321 NYLREQGNTRENELYKKSEDLVQETLPFVPVSHFFWGVWGLLQVELSPVGFGFADYGRDRLSLYFKHKQLLKNLA  395 (395)
T ss_dssp             HHHHHHTCSCGGGHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHHTHHHHHTTC
T ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999873666510679999999999999998857899999999646448998999999999999999999887119

>d1w36b2 c.37.1.19 (B:486-880) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=29807.13  Aligned_cols=1  Identities=100%  Similarity=1.300  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~g~~~p~~~~w~~~~~~~~~~~~~~~~A~~~A~~I~~ll~~~~~~~~~~~~~~~~r~v~~~DIAILvR~~~~~~   80 (395)
T d1w36b2           1 ALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAA   80 (395)
T ss_dssp             TEEEEETTEEECSEEEEECCSSCCCTTHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTEEEECCGGGEEEEESSHHHHH
T ss_pred             CCEEEECCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCEEEEEECCHHHH
T ss_conf             95367889768700210389876551309999999999999999971203653004677767788143899983766699


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~i~~aL~~~gIP~v~~~~~~~l~~~~ev~~llalL~~l~~p~d~~~l~~~L~sp~~gl~~~~l~~~~~~~~~~~~~~~~~  160 (395)
T d1w36b2          81 QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEF  160 (395)
T ss_dssp             HHHHHHHTTTCCEEETTCCCBGGGSSHHHHHHHHHHHHTCTTSHHHHHHHHHSGGGTCCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHH
T ss_conf             99999998599859935875432569999999999977455647889998708556999999998751267799999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  240 (395)
T d1w36b2         161 DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQ  240 (395)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHTTHHHHHHHSSSHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHSCCCCSTTB
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHH
T ss_conf             99999998634258999999875499999863671799999998999999998745778899999999986143231233


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~daV~ImTIHkSKGLEfpvVflp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Ee~RLlYVA  320 (395)
T d1w36b2         241 QMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVA  320 (395)
T ss_dssp             CCCCTTGGGSEEEEETTTTSSCCEEEEEETTTTCCCCCCSCEEECTTTCCEEEESSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCCCCCEEEEECHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             10110256508997114530677778997167668886556666555532225766465578898899999997454645


Q ss_pred             --------------------------------------------------------------------------C
Q ss_conf             --------------------------------------------------------------------------9
Q 003496          278 --------------------------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------------------------~  278 (815)
                                                                                                -
T Consensus       321 lTRAk~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~  395 (395)
T d1w36b2         321 LTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQV  395 (395)
T ss_dssp             HTTEEEEEEEEECCCCCSCSCCSSCCGGGGSHHHHHHTCSSCCCHHHHHHHHHHSCSTTEEEEECCCCCCCCCCC
T ss_pred             HHHHHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             734726118997555666788788865778799999707888886779998987457876667789998999879

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=0  Score=29806.26  Aligned_cols=1  Identities=0%  Similarity=-0.626  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~~~s~r~~~~~~~ir~i~~~a~~l~~~G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia   80 (395)
T d1xi9a_           1 SIRASKRALSVEYAIRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIV   80 (395)
T ss_dssp             CCCCCHHHHTCCC-------CHHHHHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHH
T ss_pred             CCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf             96300040357478999999999999779970899899999789999799999999999638898899978999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~  160 (395)
T d1xi9a_          81 EREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIR  160 (395)
T ss_dssp             HHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHH
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCHHHHHH
T ss_conf             86432045231212232322220132100121047999899838833331000320597799984332235431278899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~  240 (395)
T d1xi9a_         161 KKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYF  240 (395)
T ss_dssp             HHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTC
T ss_pred             HHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCHHCC
T ss_conf             76402650899669989754101179999998555425855774121000132222345032078888899958622142


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  320 (395)
T d1xi9a_         241 ATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGIST  320 (395)
T ss_dssp             CGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEEC
T ss_pred             CCHHHCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             54010076685187999999999988864378784799999999986087999999999999999999999986799411


Q ss_pred             --------------------------------------------------------------------------C
Q ss_conf             --------------------------------------------------------------------------9
Q 003496          278 --------------------------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------------------------~  278 (815)
                                                                                                .
T Consensus       321 ~~p~gg~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~~~e~l~eal~rl~~~l~er  395 (395)
T d1xi9a_         321 TKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMKER  395 (395)
T ss_dssp             CCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf             589855898178888899999999999999699999847332889979799996489999999999999999549

>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: Cytochrome P450
superfamily: Cytochrome P450
family: Cytochrome P450
domain: Cyp121 monooxygenase (P450 Mt2)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=0  Score=29803.67  Aligned_cols=1  Identities=0%  Similarity=-1.024  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~p~~~~~~~~~~~~~~LR~~~Pv~~~~~~~g~~~wvvt~~~dv~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~   80 (395)
T d1n40a_           1 TATVLLEVPFSARGDRIPDAVAELRTREPIRKVRTITGAEAWLVSSYALCTQVLEDRRFSMKETAAAGAPRLNALTVPPE   80 (395)
T ss_dssp             -CCCCCBSCCCCCSSSCCHHHHHHHHHCSEEEEECTTSCEEEEECSHHHHHHHHTCTTEESGGGGSTTCCCSSCCSSCGG
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf             99877789988777677399999995299789874899769997799999999769774768776677654444447817


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~d~~~H~~~R~~~~~~Fsp~~~~~~~~i~~~~~~ll~~l~~~g~~~Dlv~~~a~~l~~~vi~~llG~p~~d~~~~~  160 (395)
T d1n40a_          81 VVNNMGNIADAGLRKAVMKAITPKAPGLEQFLRDTANSLLDNLITEGAPADLRNDFADPLATALHCKVLGIPQEDGPKLF  160 (395)
T ss_dssp             GGGHHHHHHHTTCHHHHHHHTSSCSTTHHHHHHHHHHHHHHHHHHHCSCEETTTTTHHHHHHHHHHHHHTCCGGGHHHHH
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             76537871579999999987309999988789999999862033356664418888777655457777522345677777


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ls~~el~~~~~~l~~AG~eTTa~~  240 (395)
T d1n40a_         161 RSLSIAFMSSADPIPAAKINWDRDIEYMAGILENPNITTGLMGELSRLRKDPAYSHVSDELFATIGVTFFGAGVISTGSF  240 (395)
T ss_dssp             HTHHHHTBCCSSCCHHHHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHTSGGGTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHH
T ss_conf             65433333200136999999999999878899875103677777666430566665540035678999875200012335


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 l~~~l~~L~~~P~~~~~l~~e~~~~~~~i~E~lRl~~p~~~~~~R~a~~d~~i~G~~ip~G~~V~~~~~~a~rDp~~f~d  320 (395)
T d1n40a_         241 LTTALISLIQRPQLRNLLHEKPELIPAGVEELLRINLSFADGLPRLATADIQVGDVLVRKGELVLVLLEGANFDPEHFPN  320 (395)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHCGGGHHHHHHHHHHTCCCBCSCEEEEESSCEEETTEEECTTCEEEECHHHHHTCTTTSSS
T ss_pred             HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf             67888877629630001110123433323320134554543212210232112234565542022201212456200898


Q ss_pred             --------------------------------------------------------------------------C
Q ss_conf             --------------------------------------------------------------------------9
Q 003496          278 --------------------------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------------------------~  278 (815)
                                                                                                -
T Consensus       321 P~~F~p~R~~~~~~l~FG~G~h~C~G~~lA~~e~~~~l~~ll~r~p~~~l~~~~~~~~~~~~~~~r~~~~LpV~~  395 (395)
T d1n40a_         321 PGSIELDRPNPTSHLAFGRGQHFCPGSALGRRHAQIGIEALLKKMPGVDLAVPIDQLVWRTRFQRRIPERLPVLW  395 (395)
T ss_dssp             TTSCCTTCSSTTCSSTTCCGGGCCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCCBCCSBSBCCBSCCEEEC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCCCCCCEEEEEEC
T ss_conf             021387899998877779988369149999999999999999967997888885667461686333871216569

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=100.00  E-value=0  Score=29738.55  Aligned_cols=1  Identities=0%  Similarity=-1.656  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~T~~vh~g~~~d~~gav~~PI~~sst~~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~le~~la~LEg~~~a~~~   80 (394)
T d1e5ea_           1 ERMTPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVAT   80 (394)
T ss_dssp             CCCCHHHHHHHSSCCCCTTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CCCCHHHHHEECCCCCCCCCCEECCCCCCCCEEECCHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             99997899646889989999830880488886518889998751688678534598887899999999998298502234


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~d~~~~~~~i~~~t~lv~~Etp~NP~l~v  160 (394)
T d1e5ea_          81 SSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKI  160 (394)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred             CCCHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCCCEEE
T ss_conf             36228889998740233443344541320036767777630543542147899999997516456589994257763122


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~Di~~~~~~~~~~~g~~vvvDnT~atP~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~  240 (394)
T d1e5ea_         161 IDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGS  240 (394)
T ss_dssp             CCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCC
T ss_pred             EHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHCCCCEEEECHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             12444420132456708873376547645784011798899612342078743233334431468999999999973277


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~lsp~~a~ll~rgl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~~~~a  320 (394)
T d1e5ea_         241 VISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGA  320 (394)
T ss_dssp             CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHH
T ss_pred             CCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHCCCCCCCCEEEEECCCCHHHH
T ss_conf             78867799999601068899999988899999997652884577577756632155530344667872454026989999


Q ss_pred             -------------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------------~  278 (815)
                                                                                               .
T Consensus       321 ~~f~~~l~l~~~a~SlGg~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVGlEd~eDLi~Dl~qAl~~l~~  394 (394)
T d1e5ea_         321 KKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGLDALLR  394 (394)
T ss_dssp             HHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHCCCCCEEECCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf             99998088061535668766035785102521189999996698939799976218999999999999999639

>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=0  Score=29738.53  Aligned_cols=1  Identities=0%  Similarity=-0.860  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 M~~ktl~d~d~~~K~VlvR~D~NvPi~~g~I~d~~RI~~~~pTI~~ll~~~akvvl~SH~GRPkgk~~~~~Sl~~~~~~L   80 (394)
T d1phpa_           1 MNKKTIRDVDVRGKRVFCRVDFNVPMEQGAITDDTRIRAALPTIRYLIEHGAKVILASHLGRPKGKVVEELRLDAVAKRL   80 (394)
T ss_dssp             CCBCBGGGSCCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHHH
T ss_pred             CCCCCCCCCCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             99785111376799999994058776099389758999999999999978998999858889999888655569999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~l~~~v~f~~~~~~~~~~~~i~~l~~g~i~lLEN~Rf~~~E~~nd~~fak~La~l~DiyVNDAF~~aHR~haS~~gi~  160 (394)
T d1phpa_          81 GELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLENVRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIA  160 (394)
T ss_dssp             HHHHTSCCEECSCSSSHHHHHHHHTCCTTCEEECCCGGGSHHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTTTGGG
T ss_pred             HHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCHHHHHHHCCCCCEEEECCHHHHHCCCCCCCCHH
T ss_conf             87406241113443567899999605789788635445354432153889974254488999665136551477511000


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~lps~aG~l~ekEi~~L~~~l~~p~rP~~aIiGGaKisdKi~~i~~l~~k~D~i~igG~mantfl~a~G~~iG~sl~e~  240 (394)
T d1phpa_         161 HYLPAVAGFLMEKELEVLGKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEE  240 (394)
T ss_dssp             GTSCEEECHHHHHHHHHHHHHHHSCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTHHHHHHHHTTCCCTTSCCCG
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCCCCCC
T ss_conf             02662001108999999999973899976999706763327999987875357278742287999998599667324331


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~a~~i~~~~~~~~~~i~lP~D~v~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~aktI~WNGPmG  320 (394)
T d1phpa_         241 DKIELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRDVIRESKLVVWNGPMG  320 (394)
T ss_dssp             GGHHHHHHHHHHHHHHTCEEECCSEEEEESSSSTTSCEEEEEGGGCCTTCEEEEECHHHHHHHHHHHHTCSEEEEESCSS
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHCEEEEECCEE
T ss_conf             14778999998776429865588630432123455662477701214786003567248999999986530589955523


Q ss_pred             -------------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------------~  278 (815)
                                                                                               .
T Consensus       321 ~fE~~~F~~GT~~l~~~ia~~~~a~sivGGGdT~aai~~~g~~~~~shvSTGGGA~Le~L~G~~LPgi~aL~~k  394 (394)
T d1phpa_         321 VFEMDAFAHGTKAIAEALAEALDTYSVIGGGDSAAAVEKFGLADKMDHISTGGGASLEFMEGKQLPGVVALEDK  394 (394)
T ss_dssp             CTTSGGGCHHHHHHHHHHHHCTTCEEEECSHHHHHHHHHTTCGGGSSEECSCTHHHHHHHTTCCCHHHHTSCBC
T ss_pred             EEECCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCCHHHHHHCC
T ss_conf             56346241899999999996589869995779999999749867885796678999999879997358785169

>d1u1ha1 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: UROD/MetE-like
family: Cobalamin-independent methionine synthase
domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=0  Score=29734.43  Aligned_cols=1  Identities=0%  Similarity=-0.560  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~lG~PRig~~RELK~A~E~yw~G~is~~eL~~~~~~~~~~~~~~Q~~aGid~I~~GeFs~yD~vLD~~~~~g~iP~R   80 (394)
T d1u1ha1           1 ASHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSNTFAHYDQVLDTTAMLGAVPPR   80 (394)
T ss_dssp             CBBCSCCCCSCTTCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTTCSBCEESCCCSSCHHHHHHHHTTCCCGG
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf             98767589889761899999999779999999999999999999999998599961559840258899999981996534


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 f~~~~~~~~ld~yFa~arg~~~~~a~emtkwfdtnyhy~vPe~~~~~~~~l~~~~~~~~~~ea~~~g~~~Kpvl~GP~T~  160 (394)
T d1u1ha1          81 YGYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVSY  160 (394)
T ss_dssp             GCCCSSSCCHHHHHHHHHCBTTBCCCCEEECTTSSCEEECCEECTTCCCCCCCCHHHHHHHHHHHTTCCCEEEEECHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf             44445666288887887258764444554345789774577407886345540168999998763487646245778999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 l~l~k~~~~~~~~~~~~~ll~~L~~aY~~~l~~L~~aG~~~VQiDEP~L~~dl~~~~~~~~~~ay~~l~~~~~~~~i~l~  240 (394)
T d1u1ha1         161 LLLSKAAKGVDKSFELLSLLPKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAFTGAYAELESTLSGLNVLVE  240 (394)
T ss_dssp             HHTCEECTTCCTTCCGGGGHHHHHHHHHHHHHHHHHHTCCEEEEECGGGGSCCCHHHHHHHHHHHHHHTTTTTTSEEEEE
T ss_pred             HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             97753247876544799999999999999999987665988986062021369999999999999999864489974378


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 tyfg~~~~~~~~~l~~~~~Vd~l~lD~~~~~~~l~~~~~~~p~~k~L~~GVVdgrniw~ed~e~v~~~i~~~~~~v~~er  320 (394)
T d1u1ha1         241 TYFADIPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDK  320 (394)
T ss_dssp             CCSSCCCHHHHHHHTTCTTCCEEEEETTTCTTHHHHHHHCCCTTCEEEEEEECSSSCBCCCHHHHHHHHHHHHHHSCSSC
T ss_pred             ECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             60488763568888636798735788523851148898758755689754681478886999999999999997379200


Q ss_pred             -------------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------------~  278 (815)
                                                                                               .
T Consensus       321 l~lspsCsLlh~P~~~~~e~~l~~~~~~~lafa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~n  394 (394)
T d1u1ha1         321 LVVSTSCSLLHTAVDLINETKLDDEIKSWMAFAAQKVVEVNALAKALAGQKDEALFSANAAALASRRSSPRVTN  394 (394)
T ss_dssp             EEEEESSCGGGSCSCGGGCCSSCHHHHHTBCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHCTTTCC
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99938998767787174335799889845151999999999999997288308999999999998843887789

>d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Epoxide hydrolase
domain: Bacterial epoxide hydrolase
species: Aspergillus niger [TaxId: 5061]

Probab=100.00  E-value=0  Score=29734.13  Aligned_cols=1  Identities=0%  Similarity=-1.788  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~p~~~~~~~~pf~i~~~~~~~~~l~~~l~~~r~~~~~~~~~~~~~~~g~~~~~~~~l~~~w~~~~dw~~~e~~ln   80 (394)
T d1qo7a_           1 KAFAKFPSSASISPNPFTVSIPDEQLDDLKTLVRLSKIAPPTYESLQADGRFGITSEWLTTMREKWLSEFDWRPFEARLN   80 (394)
T ss_dssp             CTTCCCCTTCCSCCCBCCCCCCHHHHHHHHHHHHHCCCCCCCTGGGCTTCTTSSCHHHHHHHHHHHHHTCCHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             99788999897787364635899999999999984478997445677753459889999999998634389899999987


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~f~~~i~G~~iHf~h~~~~~~~~~pLlLlHG~P~s~~~w~~vi~~La~~g~~~~~~f~VIaPDLpG~G~S~~P~~~~  160 (394)
T d1qo7a_          81 SFPQFTTEIEGLTIHFAALFSEREDAVPIALLHGWPGSFVEFYPILQLFREEYTPETLPFHLVVPSLPGYTFSSGPPLDK  160 (394)
T ss_dssp             TSCEEEEEETTEEEEEEEECCSCTTCEEEEEECCSSCCGGGGHHHHHHHHHHCCTTTCCEEEEEECCTTSTTSCCCCSSS
T ss_pred             CCCCEEEEECCEEEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf             68975999879888999972258998779993665411899999887641135776550444345424347889998777


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~y~~~~~a~~~~~l~~~lg~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (394)
T d1qo7a_         161 DFGLMDNARVVDQLMKDLGFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLCAMRAPPEGPSIESLSAAEKEGIARME  240 (394)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCCCSCSSSCCGGGSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             65788999999998764047624899840765178999887512521015764034322344321000135677888777


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~  320 (394)
T d1qo7a_         241 KFMTDGLAYAMEHSTRPSTIGHVLSSSPIALLAWIGEKYLQWVDKPLPSETILEMVSLYWLTESFPRAIHTYRETTPTAS  320 (394)
T ss_dssp             HHHHHSCHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHTTCHHHHGGGHHHHCC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf             77775555555430125555432024520046677787642244568879999999987500132056799999842235


Q ss_pred             -------------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------------~  278 (815)
                                                                                               -
T Consensus       321 ~~~~~~~~~~~~~i~vPtlv~~g~~D~~~~p~~~~~~~~~~~~~~~~~~~GHf~~~E~Pe~~a~~I~~Fl~~v~  394 (394)
T d1qo7a_         321 APNGATMLQKELYIHKPFGFSFFPKDLCPVPRSWIATTGNLVFFRDHAEGGHFAALERPRELKTDLTAFVEQVW  394 (394)
T ss_dssp             ------CTTTTTCEEEEEEEEECTBSSSCCCHHHHGGGEEEEEEEECSSCBSCHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCEEEEECCCCCCCHHHHCHHHHHHHHHHHHHHHC
T ss_conf             66222321237840687589980888532589999864684699985994781478699999999999999759

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=0  Score=29732.53  Aligned_cols=1  Identities=100%  Similarity=0.834  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~d~i~~l~~~~~~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~   80 (394)
T d2ay1a_           1 MLGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGE   80 (394)
T ss_dssp             CGGGCCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             98778878998399999997178998978851787658889989888999999998508878988997778999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~  160 (394)
T d2ay1a_          81 LILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMK  160 (394)
T ss_dssp             HHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHH
T ss_pred             HHHCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCCEEEEECCCCHHCCCCCCHHHH
T ss_conf             97365654346420003572688889988765428844999832321011899998599799941430101442202688


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s  240 (394)
T d2ay1a_         161 ADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAAS  240 (394)
T ss_dssp             HHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             HHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf             88764136868999479999899989999999999875304289987525122211666664045544443245443345


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~  320 (394)
T d2ay1a_         241 CSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLRE  320 (394)
T ss_dssp             CTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             55666677654201030426899999865366765202423224788889887227888999999999999999999999


Q ss_pred             -------------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------------~  278 (815)
                                                                                               .
T Consensus       321 ~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~~~~~~L~~~~~V~~~~g~Ri~~a~l~~~~i~~l~~ai~~v~~  394 (394)
T d2ay1a_         321 QLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIEVGV  394 (394)
T ss_dssp             HHHHHHHHHHTSSTTTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHCCEEECCCCEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf             99999998489886036779961698519399999999996898956987899537998889999999998279

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=100.00  E-value=0  Score=29730.74  Aligned_cols=1  Identities=0%  Similarity=-0.860  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~~~f~~~~~r~~~~s~k~~~~~~~~~~~g~~vi~l~~g~pdf~~p~~v~~al~~~~~~~~~~Y~~g~~~Lr~aia~~~~   80 (394)
T d1c7na_           1 MIYDFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMK   80 (394)
T ss_dssp             CCCCSCCCCCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             97678977677999878899999876754997688327997999889999999999857886899987999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~g~~~~~~~I~vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~  160 (394)
T d1c7na_          81 DRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLS  160 (394)
T ss_dssp             HHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHH
T ss_pred             HHCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             85599888750476334212343321034444332333467662046677654300222222245655540255666553


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~  240 (394)
T d1c7na_         161 KDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTF  240 (394)
T ss_dssp             TCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHH
T ss_pred             CCCCCEEEEECCCCCCCCEECCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC
T ss_conf             04563299945523565412569995343203454320586145532124588666410111002311103234542001


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  320 (394)
T d1c7na_         241 NIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAP  320 (394)
T ss_dssp             TCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCC
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEC
T ss_conf             22222322223567033445555543003443222221024554200144301311121012321000121256530422


Q ss_pred             -------------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------------~  278 (815)
                                                                                               .
T Consensus       321 ~p~g~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~i~eal~rl~~~l~~Lk  394 (394)
T d1c7na_         321 LIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK  394 (394)
T ss_dssp             CCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEEEECCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf             78950489897888899999999999986999997423418899987999995899999999999999999639

>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis orientalis [TaxId: 31958]}

class: All alpha proteins
fold: Cytochrome P450
superfamily: Cytochrome P450
family: Cytochrome P450
domain: p450 monoxygenase OxyB
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=100.00  E-value=0  Score=29729.26  Aligned_cols=1  Identities=0%  Similarity=-1.922  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~p~~~~~~~~dp~~~lr~~~p~~~~~~~~~~~~~~~w~vt~~~dv~~Vl~d~~~f~s~~~~~~~~~~~~~~~~~~~~~   80 (394)
T d1lfka_           1 DPRPLHIRRQGLDPADELLAAGALTRVTIGSGADAETHWMATAHAVVRQVMGDHQQFSTRRRWDPRDEIGGKGIFRPREL   80 (394)
T ss_dssp             CCSCGGGCEETTEECHHHHTSCSEEEEC------CCCEEEECSHHHHHHHHHCTTTEEECTTCCC-------------CC
T ss_pred             CCCCHHCCCCCCCCHHHHHHHCCEEEEECCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             98961104235995799997499058978888888668996799999999759864547765565444565433340432


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~ll~~Dg~~H~~~R~~l~~~fs~~~v~~~~~~i~~~~~~ll~~l~~~g~~~Dl~~~~~~~~~~~~~~~~~g~~~~~~~  160 (394)
T d1lfka_          81 VGNLMDYDPPEHTRLRRKLTPGFTLRKMQRMAPYIEQIVNDRLDEMERAGSPADLIAFVADKVPGAVLCELVGVPRDDRD  160 (394)
T ss_dssp             TTCGGGCCTTHHHHHHHHHGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCSSEEHHHHTTTTHHHHHHHHHHTCCGGGHH
T ss_pred             CCCHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEEEECCCCCHHHHH
T ss_conf             34133048756899998854331999999998899999999986520268763025676541111021100475301389


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~ag~~tt~~~  240 (394)
T d1lfka_         161 MFMKLCHGHLDASLSQKRRAALGDKFSRYLLAMIARERKEPGEGMIGAVVAEYGDDATDEELRGFCVQVMLAGDDNISGM  240 (394)
T ss_dssp             HHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHGGGSCHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             99998862233210037999999999999999999864002210000001013678989999999999998643205889


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~r~~~~d~~~~g~~ip~G~~V~~~~~~~~rdp~~~~d  320 (394)
T d1lfka_         241 IGLGVLAMLRHPEQIDAFRGDEQSAQRAVDELIRYLTVPYSPTPRIAREDLTLAGQEIKKGDSVICSLPAANRDPALAPD  320 (394)
T ss_dssp             HHHHHHHHHHSGGGGGGGSSCHHHHHHHHHHHHHHHCCBSCCSCEEESSCEEETTEEECTTCEEEECHHHHTTCTTTCTT
T ss_pred             HHHHHHHHHCCHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCEEECCCCCEEECCCEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999875222045543101223332110000000023321012113567121483542687401232334679212667


Q ss_pred             -------------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------------~  278 (815)
                                                                                               -
T Consensus       321 P~~F~PeR~~~~~lpFG~G~r~C~G~~lA~~e~~~~l~~Ll~~f~~~~l~~p~~~~~~~~~~~~~g~~~lpv~~  394 (394)
T d1lfka_         321 VDRLDVTREPIPHVAFGHGVHHCLGAALARLELRTVFTELWRRFPALRLADPAQDTEFRLTTPAYGLTELMVAW  394 (394)
T ss_dssp             TTSCCTTSCCCCCCTTCCSTTSCTTHHHHHHHHHHHHHHHHHHCTTCEESSTTCCCEEECSSSBCEEEECEEEC
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEECCCCCCCCEEEEEEC
T ss_conf             33218899999988878987578069999999999999999967988778886766030687777870005359

>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Glycyl-tRNA synthetase (GlyRS)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=0  Score=29736.27  Aligned_cols=1  Identities=0%  Similarity=-0.427  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~s~e~i~~l~KRRgFv~pS~EIYGGlaG~yDyGPlG~~LK~Ni~~~Ww~~fv~~~e~~~~id~~ii~p~~V~kASGHv   80 (394)
T d1atia2           1 AASSLDELVALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHE   80 (394)
T ss_dssp             CCCCHHHHHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHH
T ss_pred             CCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHCCCC
T ss_conf             93209999999984577415712226710155768427999999999999987540477777513344898886206787


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~~g~~~~~t  160 (394)
T d1atia2          81 ATFADPMVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWT  160 (394)
T ss_dssp             HHCEEEEEEC--------------------------------------------------------------------CC
T ss_pred             CCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             88764420267777532022677665565543321134555666889999875476866525876178899889867767


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnF~~~l~~~r~KlPFGiAQIGk~FRNEIsPr~~l~R~REF~q~Ei  240 (394)
T d1atia2         161 PPRYFNMMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEI  240 (394)
T ss_dssp             CCEEEECBEEEECSSCCCGGGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEE
T ss_pred             CCCHHHHHCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             50022100012323345656336777013069999799999971567880112432211466376557756332212026


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 E~Fv~P~~~~~~~~yw~~~~~~f~~~lGi~~~~lrfrqh~~~ElAHYa~~~~DiE~~fp~Gw~El~GiA~RtdyDL~~H~  320 (394)
T d1atia2         241 EYFVRPGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHT  320 (394)
T ss_dssp             EEEECGGGHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEEEEEETTEEEEEEEEEECTTHHHHHHC
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHCCCCEEEEEEECCCCCEECHHHHCCCHHHHHHHH
T ss_conf             89981785157788899999999998368833336775052355540545278999669985840413143121478776


Q ss_pred             -------------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------------~  278 (815)
                                                                                               +
T Consensus       321 k~~~~~~~~~~~~~~~~s~~~l~~~d~~~~~~~iPhVIEPS~GldR~~la~L~~ay~eee~~~~e~R~vLkl~P  394 (394)
T d1atia2         321 KDQEALGITARVLRNEHSTQRLAYRDPETGKWFVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKP  394 (394)
T ss_dssp             SSTTTTTCCSCCCCCSCCCSCCCEECSSSCCEECCEEEEEEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCG
T ss_pred             HHCCCCCHHHHHHCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf             42033202344312777663467880678907850178758882189999999876434227997259983599

>d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Exo-beta-(1,3)-glucanase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=100.00  E-value=0  Score=29728.54  Aligned_cols=1  Identities=0%  Similarity=-0.494  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~rGvNlGgwlv~E~w~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~h~~~~it~~D~~~i~~~   80 (394)
T d2pb1a1           1 AWDYDNNVIRGVNLGGWFVLEPYMTPSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNL   80 (394)
T ss_dssp             CCCTTTCCEEEEECTTSSSCCTTTCGGGTGGGCBTTBCTTSCCSHHHHHHHHCHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred             CCCCCCCEEEEEECCHHHCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf             97888977898864334305765583344313677765443201888998739687999999998604889999999977


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 G~N~VRiPv~~~~~~~~~~~~~~~~~~~~ld~~i~~a~~~gl~VilDlH~~pg~~~~~~~~g~~~~~~~~~~~~~~~~~~  160 (394)
T d2pb1a1          81 GLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLN  160 (394)
T ss_dssp             TCCEEEEEEEGGGTCCCTTCCCCCCHHHHHHHHHHHHHHTTCEEEEEEEECTTCSSCCGGGSSTTCCCTTSTTHHHHHHH
T ss_pred             CCCEEEEEECHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             99889998027884488877552368999999999999799189998511588666767767667644366779999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~ia~~~~~~~~~~~v~g~el~NEP~~~~~~~~~~~~~~~~~~~~IR~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~  240 (394)
T d2pb1a1         161 VLNTIFKKYGGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYWNNFLTVAEGQW  240 (394)
T ss_dssp             HHHHHHHHHSSGGGTTTEEEEESCSCCCGGGSCHHHHHHHHHHHHHHHHHTTCCCCEEEECTTCCTTTTTTSSCGGGTCC
T ss_pred             HHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCCCC
T ss_conf             99999999715887770688741356786654378999999999999997389976998488755344444315788886


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~vv~d~H~Y~~f~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ge~s~~~~d~~~~~~~~~~~~~~~g~~~~~~~~Ge~  320 (394)
T d2pb1a1         241 NVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNVAGEWSAALTDCAKWLNGVNRGARYEGAYDNAPYIGSC  320 (394)
T ss_dssp             SEEEEEECCSCSSHHHHTCCHHHHHHHHHHHHHHHHTCSSEEEEEECCSCSSCCSTTTTCTTCCCTTBTCSTTCCBCCCS
T ss_pred             EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEECEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             27985311434678655689888787663034555315676120201023005666623655342214654787655646


Q ss_pred             -------------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------------~  278 (815)
                                                                                               .
T Consensus       321 ~~~~d~~~~~~~~~~~~r~~~~aQ~~~~e~~~GW~fWt~K~~~~~~W~~~~~~~~G~iP~~~~~~~~~~~c~~~  394 (394)
T d2pb1a1         321 QPLLDISQWSDEHKTDTRRYIEAQLDAFEYTGGWVFWSWKTENAPEWSFQTLTYNGLFPQPVTDRQFPNQCGFH  394 (394)
T ss_dssp             GGGSSGGGCCHHHHHHHHHHHHHHHHHHHTTTEEEESCSCCSSCGGGCHHHHHHTTCSCSSTTCCSSTTSSCCC
T ss_pred             CCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCHHCCCCCCCCCC
T ss_conf             66567101678899999999999999985279678963016999988889998788969991323688888999

>d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus sp. 707 [TaxId: 1416]

Probab=100.00  E-value=0  Score=29724.89  Aligned_cols=1  Identities=0%  Similarity=-0.527  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~q~f~w~~~~~g~~~~~i~~kLdyL~~LGv~aIwL~Pi~~~~~~~~~gY~~~~~yd~~~~~~~~~vd~~~Gt~~d   80 (394)
T d2d3na2           1 TNGTMMQYFEWYLPNDGNHWNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQ   80 (394)
T ss_dssp             CCCCEEECCCTTCCSSSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSSBTTBCHHH
T ss_pred             CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             98627887742657889719999998999997199989979570178878889786667554434446776888999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 f~~Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (394)
T d2d3na2          81 LQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFDG  160 (394)
T ss_dssp             HHHHHHHHHHTTCEEEEEECCSEECSCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEEE
T ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999999987998999971266567664310012235765433334564443444345676556778765444445787


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~~~~~~~~w~~~~giDGfR~D~a~~~~~~  240 (394)
T d2d3na2         161 VDWDQSRRLNNRIYKFRGHGKAWDWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIKYS  240 (394)
T ss_dssp             ESCCTTTCCSSCEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHH
T ss_pred             CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHH
T ss_conf             65556668888754006888765666652323420267762155888998788876565420567314774224437767


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~  320 (394)
T d2d3na2         241 FTRDWINHVRSATGKNMFAVAEFWKNDLGAIENYLQKTNWNHSVFDVPLHYNLYNASKSGGNYDMRNIFNGTVVQRHPSH  320 (394)
T ss_dssp             HHHHHHHHHHHHHTCCCEEEECCCCSCHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCSCGGGTTTTCHHHHCGGG
T ss_pred             HHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHCCCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHH
T ss_conf             89999999987408740210212366632120010033442111037899999999840760539998721511069868


Q ss_pred             -------------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------------~  278 (815)
                                                                                               -
T Consensus       321 ~v~fl~NHD~~r~~~~~~~~~~~~~~la~a~~l~~~pGiP~iyyGdE~G~~~~~~p~~r~~~~~l~~~r~~~~~  394 (394)
T d2d3na2         321 AVTFVDNHDSQPEEALESFVEEWFKPLAYALTLTREQGYPSVFYGDYYGIPTHGVPAMRSKIDPILEARQKYAY  394 (394)
T ss_dssp             EEECSCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGGGTBCCCHHHHHHHHHHHHHTCC
T ss_pred             EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             05767288686524455673199999999999984999679972672098998895548999999999998479

>d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: DNA polymerase I
domain: Family B DNA polymerase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=29727.49  Aligned_cols=1  Identities=0%  Similarity=-0.559  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~~~~~~~~y~Gg~V~~p~~G~~~~v~~lDf~SLYPsii~~~Ni~p~t~v~~~~~~~~~~~~~~~~~~~~~~~~g~lp~~   80 (394)
T d1q8ia2           1 NLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIVRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEI   80 (394)
T ss_dssp             CTTCSCCCCCCCCCCBCCCCEEEEEEEEEEETTHHHHHHHHHCCCHHHHHHHHHSCSTTTEEECSTTCEEESSSCSHHHH
T ss_pred             CCCCCCCCCCCCCEECCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHH
T ss_conf             99888998899837837999757885588831127999999679965437877678876555786543332001178999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 l~~l~~~R~~~K~~~~d~~Q~a~Ki~~NS~YG~~g~~~~~~~~~~~A~~iT~~Gr~~i~~~~~~~e~~g~~ViygDTDSi  160 (394)
T d1q8ia2          81 VTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDST  160 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSEE
T ss_pred             HHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             99999742100002321024789871221206002455521136788889888589999988631223466650356418


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~E~~~~~~~~~~kk~~~~~~kkrY~g~~~~~~~~~~  240 (394)
T d1q8ia2         161 FVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRM  240 (394)
T ss_dssp             EEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCEEEEEEEEEEEECCCCTTCTTCCSCEEEEEEETTEEEE
T ss_pred             EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHEEEEHHHHHHHHHHHHHHHCCEEECCCCEE
T ss_conf             99947971245677889999998877656676665113432002553200000022112113234433000011233247


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~KG~e~vRrd~~~~~k~~~~~vl~~i~~~~~~~e~vk~~~~~l~~~~i~~~~i~~~~l~k~~~~y~~~~~~hV~~a~~~  320 (394)
T d1q8ia2         241 VFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLA  320 (394)
T ss_dssp             EEESSCC--CCCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTTTGGGGCC-------------------------
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf             88750014666662677898989999963626888899999987605877045044543156000356787699999999


Q ss_pred             -------------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------------~  278 (815)
                                                                                               -
T Consensus       321 ~~~~~~~~~~~~~~~g~~i~Yv~~~~~~~~~~~~~~~iD~~yYi~~qi~~~~~ril~~~~~~~~~~~~~~~~LF  394 (394)
T d1q8ia2         321 DEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF  394 (394)
T ss_dssp             -----------------------------------CCCCHHHHHHHTHHHHHHTTGGGGTCCHHHHHHHHHCC-
T ss_pred             HHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCC
T ss_conf             98766327988899898679999899986577548998789999974089999998762788999974686889

>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin homolog 1, Cul-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=29733.07  Aligned_cols=1  Identities=0%  Similarity=-1.059  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~d~~W~~L~~ai~~I~~~~~~~~~~~~~lY~~vy~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~l~~~l   80 (394)
T d1ldja2           1 LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFL   80 (394)
T ss_dssp             CHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             96349999999999986699997999999999999994487432000111101121000121025457999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~l~~i~~~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~~~~~~I~~~~l~~fr~~v~~~~~  160 (394)
T d1ldja2          81 KNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLN  160 (394)
T ss_dssp             HHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHHHHTTTTT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999877437879999999999999999999999999886689988604445666541999999999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~l~~~il~~I~~~R~g~~i~~~li~~~i~~l~~l~~~~~~~~~~~~~~~~Y~~~FE~~~L~~t~~~Y~~~~~~~l~~~~  240 (394)
T d1ldja2         161 KQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNP  240 (394)
T ss_dssp             THHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999998678966699999999999994832323330132278878998999999999999999999998498


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~eYl~~v~~~l~eE~~r~~~yl~~~t~~~l~~~l~~~LI~~~~~~l~~~~~~ll~~~~~~~L~~lY~L~~rv~~~~~~l  320 (394)
T d1ldja2         241 VTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGEL  320 (394)
T ss_dssp             TTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHHHHHHHHHHSCCTTHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf             35899999999999999999746864699999999999999999999999999987165889999999986553518999


Q ss_pred             -------------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------------~  278 (815)
                                                                                               .
T Consensus       321 ~~~~~~~I~~~G~~~i~~~~~~~~~~~~~~V~~ll~l~~~~~~ii~~~F~~d~~f~~~l~~af~~fiN~n~~~~  394 (394)
T d1ldja2         321 KKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTK  394 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99999999999999997233114578689999999999999999999859988999999999999837666689

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=29657.11  Aligned_cols=1  Identities=0%  Similarity=-0.892  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 t~~~~~~f~T~~vHag~~~d~~gav~pPI~~ssTf~~~~~~~~~~~y~YsR~gnPT~~~lE~~la~LE~~~~a~~~sSGm   80 (393)
T d1n8pa_           1 TLQESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENLERAVAALENAQYGLAFSSGS   80 (393)
T ss_dssp             CCCSSCCHHHHHHHTTCCCCSSCCSSCCBCCCSBCCBSSSSSBSSSCCBTTTCCHHHHHHHHHHHHHTTCSEEEEESCHH
T ss_pred             CCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf             99878981042077898899898826882788765138864535773353899868999999999971995488834701


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 aAi~~~l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~~~~~~~~~~i~~~t~lv~~EspsNP~l~v~Di~~i  160 (393)
T d1n8pa_          81 ATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKV  160 (393)
T ss_dssp             HHHHHHHHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHH
T ss_pred             HHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCEEEECCCCHHHHHCCCHHHH
T ss_conf             67776653035798344322001340344454541255225885135689999851201346723763234320203555


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 a~~a~~~~~~~g~~lvVDnT~atP~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p  240 (393)
T d1n8pa_         161 ADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSP  240 (393)
T ss_dssp             HHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCH
T ss_pred             HHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHCCCEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCH
T ss_conf             54444201467845998567447044770541898999816644579886026301102166999999998643888986


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~a~ll~rgl~Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~~~~~~  320 (393)
T d1n8pa_         241 FDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAAS  320 (393)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEEEEECCHHHHH
T ss_conf             88999982775034679999998888999997336727997302334543200222103457877148999959999999


Q ss_pred             ------------------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------------------~  278 (815)
                                                                                              +
T Consensus       321 ~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvGlE~~~DLi~Dl~~AL~~a~~  393 (393)
T d1n8pa_         321 KFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQATN  393 (393)
T ss_dssp             HHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHCCCCEECCCCCCCCCEEECCHHHCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf             9997188443561677757147376022542289999996598949799986528999999999999999649

>d1xlma_ c.1.15.3 (A:) D-xylose isomerase {Arthrobacter, strain b3728 [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: Xylose isomerase
domain: D-xylose isomerase
species: Arthrobacter, strain b3728 [TaxId: 1663]

Probab=100.00  E-value=0  Score=29655.13  Aligned_cols=1  Identities=0%  Similarity=-0.659  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~p~~~~~f~~~~Wt~~~~g~dpFG~~t~~~~d~~~~~~~~~~lG~~~~~fHd~D~~p~~~~~~e~~~~~~~~k~~l~~~   80 (393)
T d1xlma_           1 VQPTPADHFTFGLWTVGWTGADPFGVATRKNLDPVEAVHKLAELGAYGITFHDNDLIPFDATEAEREKILGDFNQALKDT   80 (393)
T ss_dssp             CCCCGGGCEEEEHHHHTCCCCBTTBCCCSCCCCHHHHHHHHHHHTCCEEEEEHHHHSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             99984456417886146678899898878899999999999981998880352334888998788999999999999853


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 Gl~l~~~t~nlf~~p~~~~Ga~tnPD~~VR~~Ai~~~k~~idia~~LGa~~~v~W~G~~G~~~~~~~d~~~~~~~l~e~l  160 (393)
T d1xlma_          81 GLKVPMVTTNLFSHPVFKDGGFTSNDRSIRRFALAKVLHNIDLAAEMGAETFVMWGGREGSEYDGSKDLAAALDRMREGV  160 (393)
T ss_dssp             TCEEEEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCSEEEECCSSSEESSGGGCCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             98110223664334355437756959999999999999999999996898499736888677777658999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~v~~~a~~~g~~~~~~IEpKP~EP~~~~~~~~~~~~l~fl~~~~~~~~~gvnlD~gH~~lag~~~~~~va~a~~~gkLg  240 (393)
T d1xlma_         161 DTAAGYIKDKGYNLRIALEPKPNEPRGDIFLPTVGHGLAFIEQLEHGDIVGLNPETGHEQMAGLNFTHGIAQALWAEKLF  240 (393)
T ss_dssp             HHHHHHHHHHTCSCEEEECCCSCSSSSEESSCSHHHHHHHHTTCTTGGGEEECCBHHHHHTTTCCHHHHHHHHHHTTCBC
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHCCCCE
T ss_conf             99999898629885698611677775554037599999999980894204575204524441577078898998669730


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~vh~Nd~~~~~~D~Dl~~gs~~~~~~~~~~~~l~~g~~~g~~~y~G~~~fD~~~~r~~~~e~~~~~~~~~~~~~~~l~~~  320 (393)
T d1xlma_         241 HIDLNGQRGIKYEQELVFGHGDLTSAFFTVDLLENGFPNGGPKYTGPRHFDYKPSRTDGYDGVWDSAKANMSMYLLLKER  320 (393)
T ss_dssp             CCEECBCCSSSSCCCBCTTSSCHHHHHHHHHHHHHCCTTCCCCCCSCEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             24426787666666677885469999999999953664678787775588722667887306999999999999999999


Q ss_pred             ------------------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------------------~  278 (815)
                                                                                              .
T Consensus       321 A~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~e~L~q~~~~~l~g~~  393 (393)
T d1xlma_         321 ALAFRADPEVQEAMKTSGVFELGETTLNAGESAADLMNDSASFAGFDAEAAAERNFAFIRLNQLAIEHLLGSR  393 (393)
T ss_dssp             HHHHHHCHHHHHHHHHHTTTGGGSCSSCTTCCHHHHHTCGGGTTTCCHHHHTTCCCCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf             9997519999999986565021045543899889999788753699845552232689999999999970489

>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: A4 beta-galactosidase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=0  Score=29654.58  Aligned_cols=1  Identities=0%  Similarity=-0.893  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~p~~~~~~~~~~D~~~~~~~G~n~vR~~i~~W~~iep~~G~~~~~~~d~~i~~~~~~Gi~~iv~l~~~~~P~w~   80 (393)
T d1kwga2           1 MLGVCYYPEHWPKERWKEDARRMREAGLSHVRIGEFAWALLEPEPGRLEWGWLDEAIATLAAEGLKVVLGTPTATPPKWL   80 (393)
T ss_dssp             CEEEECCGGGSCHHHHHHHHHHHHHHTCCEEEECTTCHHHHCSBTTBCCCHHHHHHHHHHHTTTCEEEEECSTTSCCHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf             94763584549999999999999982999899555346531888992687999999999998799999976777775343


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ne~~~~~~~~~~~~~~~~~~~  160 (393)
T d1kwga2          81 VDRYPEILPVDREGRRRRFGGRRHYCFSSPVYREEARRIVTLLAERYGGLEAVAGFQTDNEYGCHDTVRCYCPRCQEAFR  160 (393)
T ss_dssp             HHHCGGGSCBCTTSCBCCSSSSCCCCTTCHHHHHHHHHHHHHHHHHHTTCTTEEEEECSSSTTTTTTSCCCSHHHHHHHH
T ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf             21486501245778504666666667799999999999999998771688537887403555655775443167777778


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (393)
T d1kwga2         161 GWLEARYGTIEALNEAWGTAFWSQRYRSFAEVELPHLTVAEPNPSHLLDYYRFASDQVRAFNRLQVEILRAHAPGKFVTH  240 (393)
T ss_dssp             HHHHHHHSSHHHHHHHHTTTGGGCCCSSGGGCCCSCSCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             88887665299999876530022223676545676555555662565899998777677787889875421465555435


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  320 (393)
T d1kwga2         241 NFMGFFTDLDAFALAQDLDFASWDSYPLGFTDLMPLPPEEKLRYARTGHPDVAAFHHDLYRGVGRGRFWVMEQQPGPVNW  320 (393)
T ss_dssp             EECTTCCSSCHHHHGGGSSSEEEEECHHHHHHHSCCCHHHHHHTTTTCCTTHHHHHHHHHHHHTTTCEEEEEECCSCCSS
T ss_pred             CCCCCCCCCCHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf             55566656423331256652121355555445566784223444446881688999999997347987036513666666


Q ss_pred             ------------------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------------------~  278 (815)
                                                                                              +
T Consensus       321 ~~~~~~~~~~~~~~~~~~aia~G~~~~gy~~W~~~~~~~E~~~~gL~~~d~~p~~~~~~~~~~~~~l~~~~~~  393 (393)
T d1kwga2         321 APHNPSPAPGMVRLWTWEALAHGAEVVSYFRWRQAPFAQEQMHAGLHRPDSAPDQGFFEAKRVAEELAALALP  393 (393)
T ss_dssp             SSSCCCCCTTHHHHHHHHHHHTTCSCEEEECSBCCSSSTTTTSCCSBCTTSCBCHHHHHHHHHHHHHHTCCCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             6468889867999999999977998889857557889750010014078899578999999999999974499

>d1g8ma2 c.97.1.4 (A:201-593) AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
domain: AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=0  Score=29653.33  Aligned_cols=1  Identities=0%  Similarity=-1.323  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 g~~~~~LRYGENPHQ~aA~~~~~~~~~~~~~l~gk~SyNN~lD~daA~~lv~ef~~~~~~Pa~vIiKH~NPCGvAi~~~~   80 (393)
T d1g8ma2           1 GVSQLPLRYGMNPHQSPAQLYTTRPKLPLTVVNGSPGFINLCDALNAWQLVKELKQALGIPAAASFKHVSPAGAAVGIPL   80 (393)
T ss_dssp             TTTEEEESCSSSTTSCCEEEECSSSSCSEEEEESCCCHHHHHHHHHHHHHHHHHHHHHCSCEEEEEETTEEEEEEECCCC
T ss_pred             CCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCC
T ss_conf             99879887976805411386216874316886687027679889999999997465059976999768883366508551


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~e~~~~~~~~~~~~~~~~~l~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~i~~~F~EvIIAP~f~~eAleiL~~KKN  160 (393)
T d1g8ma2          81 SEEEAQVCMVHDLHKTLTPLASAYARSRGADRMSSFGDFIALSDICDVPTAKIISREVSDGVVAPGYEEEALKILSKKKN  160 (393)
T ss_dssp             CHHHHHHTTCTTTGGGCCHHHHHHHHHHHSCTTTTTTEEEEESSCBCHHHHHHHHTSCEEEEEESCBCHHHHHHHHHGGG
T ss_pred             HHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHCCEEEEECCCCCCCHHHHHHHCCCCHHCCCCCCHHHHHHHHHCCC
T ss_conf             02332000012211346629999999871485100050788615533210243222020100113455677888742545


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 lRll~~~~~~~~~~~~~~~r~i~gg~L~Q~~d~~~~~~~~~~~v~~~~~~pt~~e~~dL~FAwkVvK~vKSNAIvlak~~  240 (393)
T d1g8ma2         161 GGYCVLQMDPNYEPDDNEIRTLYGLQLMQKRNNAVIDRSLFKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYAKDG  240 (393)
T ss_dssp             GTCEEEEECTTCCCCSEEEEEETTEEEEEECCCCCCSGGGGCCBCSSSCCCCHHHHHHHHHHHHHHHTSCSSCEEEEETT
T ss_pred             CCHHHHCCCCCCCCCCCCEEEEECCEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             21343024644577666367750531110123332455551343202345168899999999999862366458996298


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~tvGIGaGQ~SRVdsv~iA~~KA~~~~~r~~p~v~~~~~k~~~~~~e~~na~~~~~~~~~~~~e~~~~~~~~f~~~~~~l  320 (393)
T d1g8ma2         241 QVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPRVLSMKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAMFEEVPAQL  320 (393)
T ss_dssp             EEEEEECSCSCHHHHHHHHHHHHHHHHHTTCHHHHTCEECTTCCHHHHHHHHHHHHHTCSCSTHHHHHHHTTEEECCCCC
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHH
T ss_conf             68831899765478999999999887764063011000000134555541677651354332035566655420143112


Q ss_pred             ------------------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------------------~  278 (815)
                                                                                              -
T Consensus       321 ~~~~~~~~~~~~~g~vlASDAFFPF~D~ie~aa~~Gv~aIiQPGGSirD~evI~aan~~~i~M~fTg~RhF~H  393 (393)
T d1g8ma2         321 TEAEKKQWIAKLTAVSLSSDAFFPFRDNVDRAKRIGVQFIVAPSGSAADEVVIEACNELGITLIHTNLRLFHH  393 (393)
T ss_dssp             CHHHHHHHHTTCCCEEEEESSCCSSTHHHHHHHTTTEEEEEEECCCTTHHHHHHHHHHHTCEEEEESCCCCCC
T ss_pred             HHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC
T ss_conf             3788764430357857980268687568999998599399879874251999999998598899878867288

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=29649.95  Aligned_cols=1  Identities=0%  Similarity=-2.021  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (393)
T d1sq9a_           1 KVFIATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC   80 (393)
T ss_dssp             CEEEEEEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred             CCEEEEEECCCCCCCCCEEEEEECCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCC
T ss_conf             91582452087636712799996999999979996998789878877654046765420477167666750015799876


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~  160 (393)
T d1sq9a_          81 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES  160 (393)
T ss_dssp             EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred             EEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCC
T ss_conf             89999489919999822898205651245632431157896689998447886542179998389819998740477534


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  240 (393)
T d1sq9a_         161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  240 (393)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             CEEEEEECCCEECCCCEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf             10233103200014510002578986789997899989999389829998602332110000111112425638770046


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             CCCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCC
T ss_conf             65320112428988421001035321344431156666431023202358666001389888069877999899999999


Q ss_pred             ------------------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------------------~  278 (815)
                                                                                              .
T Consensus       321 g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~~~g  393 (393)
T d1sq9a_         321 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG  393 (393)
T ss_dssp             TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             CCEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCCEEEECCCCCEECCCCCCCCEEEEEECCCEEEEEECCC
T ss_conf             9799999886876137734899999999999831246998866766312368899799999199089990899

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=0  Score=29651.24  Aligned_cols=1  Identities=0%  Similarity=-0.658  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~   80 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE   80 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHH
T ss_conf             99899989984899999999997859899994677542211012111343321577887777622797079983078999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~~~~  160 (393)
T d1i24a_          81 FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGY  160 (393)
T ss_dssp             HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBCSSE
T ss_pred             HHHHHHHHHCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCC
T ss_conf             99999975110120012342101232222222222333223354078999998431242011012111223356643233


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~i  240 (393)
T d1i24a_         161 ITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTAL  240 (393)
T ss_dssp             EEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf             32222235555542135455777775310012111223310233310123112777654555542223555445655300


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g~~~~~~~~~~~~si~el~~~i~~~~~~~~~~~~~  320 (393)
T d1i24a_         241 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKLGLDVKK  320 (393)
T ss_dssp             HHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHHHHHHHHHTTTCCCCE
T ss_pred             HHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCE
T ss_conf             15667764497268852012223455333337789998874034330466437898067999999999998761987524


Q ss_pred             ------------------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------------------~  278 (815)
                                                                                              .
T Consensus       321 ~~~~~~~~~~~~~~~~~d~~k~~~LGw~P~~~~~~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~  393 (393)
T d1i24a_         321 MTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLNFAVQFKDRVDTKQIMPSVSWKKIGVKTKSMT  393 (393)
T ss_dssp             EEECCSSCSCSSCCCCBCCCHHHHTTCCCCCCCHHHHHHHHHHHHHTGGGCCGGGSSCCCCTTTCCSSCCCC-
T ss_pred             EECCCCCCCCCCCEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCC
T ss_conf             5646899889866763789999974994056999999999999999887501764588888750011224669

>d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=0  Score=29649.52  Aligned_cols=1  Identities=0%  Similarity=-0.792  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~f~w~~~~~~~~~~~i~~kLdyLk~LGv~aI~L~Pi~~~~~~~~~GY~~~d~y~~~~~~~~~~vd~~~Gt   80 (393)
T d1hvxa2           1 AAPFNGTMMQYFEWYLPDDGTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGT   80 (393)
T ss_dssp             CCCCCCCEEECCCTTCCSSSCHHHHHHHHHHHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCC
T ss_pred             CCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             98988648996750668889709999997899997499989979888688889989886676555545556776878899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~df~~LV~~aH~~GIkVIlDvV~NHt~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (393)
T d1hvxa2          81 KAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYH  160 (393)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999999999987998999984355446677542110134764334455787444455556777777778776655555


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~l~~~~~~w~~~~giDGfR~D~a~~i~  240 (393)
T d1hvxa2         161 FDGVDWDESRKLSRIYKFRGIGKAWDWEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHIK  240 (393)
T ss_dssp             EEEEEEETTTTEEEEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             78776556677676433268757556555554300101453300557737777788899998876388615642245578


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~f~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  320 (393)
T d1hvxa2         241 FSFFPDWLSYVRSQTGKPLFTVGEYWSYDINKLHNYIMKTNGTMSLFDAPLHNKFYTASKSGGTFDMRTLMTNTLMKDQP  320 (393)
T ss_dssp             TTHHHHHHHHHHHHHCCCCEEEECCCCSCHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCSCGGGTTTTCHHHHCG
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
T ss_conf             66799999999874477623551002763777777764045655003089999999987038779999999753423784


Q ss_pred             ------------------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------------------~  278 (815)
                                                                                              .
T Consensus       321 ~~~v~fl~NHD~~r~~~~~~~~~~~~~~~a~a~~l~~~pGiP~iyyGdE~G~~~~~~p~~~~~i~~~~~~rk~  393 (393)
T d1hvxa2         321 TLAVTFVDNHDTEPGQALQSWVDPWFKPLAYAFILTRQEGYPCVFYGDYYGIPQYNIPSLKSKIDPLLIARRD  393 (393)
T ss_dssp             GGEEEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHHSSSSEEEEEHHHHHCBGGGTBCCCHHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             3186877578785513444587999999999999982899389883672299996999707786999997179

>d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]

Probab=100.00  E-value=0  Score=29649.52  Aligned_cols=1  Identities=0%  Similarity=-0.493  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~f~w~~~~~gg~~~gi~~kLdylk~LGvtaI~L~Pi~~~~~~~~~gy~~~~~Y~~~~~~~~~~vd~~~Gt~~d   80 (393)
T d1e43a2           1 VNGTLMQYFEWYTPNDGQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSE   80 (393)
T ss_dssp             CCCCEEECCCTTCCSSSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHH
T ss_pred             CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             97617886766778889899999997899997599989969572689888999786567665434456766888999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 f~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (393)
T d1e43a2          81 LQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDG  160 (393)
T ss_dssp             HHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEEE
T ss_pred             HHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999999986998999870025557775444442235741113566654555344555667778877666555444788


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~np~v~~~~~~~~~~w~~~~GiDGfR~Da~~~~~~~f  240 (393)
T d1e43a2         161 ADWDESRKISRIFKFRGEGKAWDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFSF  240 (393)
T ss_dssp             ESCBTTTTBCCEEEECSSSCCCCSSSCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
T ss_conf             87666677677322157645555556555540202332311437714567799998766543486537861345689799


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~  320 (393)
T d1e43a2         241 LRDWVQAVRQATGKEMFTVAEYWQNNAGKLENYLNKTSFNQSVFDVPLHFNLQAASSQGGGYDMRKLLNGTVVSKHPLKS  320 (393)
T ss_dssp             HHHHHHHHHHHHCSCCEEEECCCCSCHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCSCGGGTTTTCSTTTCGGGE
T ss_pred             HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCE
T ss_conf             99999999874286057766533773776641222044430454117799999877216648899998515111680402


Q ss_pred             ------------------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------------------~  278 (815)
                                                                                              .
T Consensus       321 v~fl~nHD~~R~~~~~~~~~~~~~~la~a~ll~~~pG~P~IyyGdE~G~~g~~~~~~~~~~~~i~~l~~~rk~  393 (393)
T d1e43a2         321 VTFVDNHDTQPGQSLESTVQTWFKPLAYAFILTRESGYPQVFYGDMYGTKGDSQREIPALKHKIEPILKARKQ  393 (393)
T ss_dssp             EEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHHSSSSEEEEEHHHHHCCCCSSTTCCCCCHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             5755178773413356763479999999999982899479871573299998998867789999999998684

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=0  Score=29585.03  Aligned_cols=1  Identities=0%  Similarity=-0.461  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~g~~T~~vH~G~~~~~~~g~v~pPI~~ssT~~f~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEg~~~a~~~   80 (392)
T d1gc0a_           1 LPGFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL   80 (392)
T ss_dssp             CCCHHHHHHHTTCCGGGGTTBSSCCBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CCCCCHHCEECCCCCCCCCCCEECCCCCCCCEEECCHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCEEEH
T ss_conf             94812020548988877899950882288887518889999862688688523289886899999999998399511101


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~~d~~~~~~ai~~~t~lv~~Esp~NP~l~v  160 (392)
T d1gc0a_          81 ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHM  160 (392)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred             HHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCEEEE
T ss_conf             44789999998752369980001211110145564321024774224578667999998478787599964666321354


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~Di~~i~~ia~~~g~~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~  240 (392)
T d1gc0a_         161 ADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAV  240 (392)
T ss_dssp             CCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCC
T ss_pred             CCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             24399999998459879983672574505867848988998665203598554431024306789898899999703886


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~p~da~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~~~~~~~  320 (392)
T d1gc0a_         241 LSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGR  320 (392)
T ss_dssp             CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHH
T ss_pred             CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHH
T ss_conf             88045799982206089999999999999999997399865786524458865332133456778379999959999999


Q ss_pred             -----------------------------------------------------------------------C
Q ss_conf             -----------------------------------------------------------------------9
Q 003496          278 -----------------------------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------------------------~  278 (815)
                                                                                             .
T Consensus       321 ~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~Gi~~~liRlSVGlEd~eDLi~Dl~~AL~aa~  392 (392)
T d1gc0a_         321 RFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKASA  392 (392)
T ss_dssp             HHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHCCCCEEEECCCCCCHHHCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf             999858846671246876850108622264228999999759792969998601899999999999999629

>d2d0ta1 a.266.1.2 (A:12-403) Indoleamine 2,3-dioxygenase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Indolic compounds 2,3-dioxygenase-like
superfamily: Indolic compounds 2,3-dioxygenase-like
family: Indoleamine 2,3-dioxygenase-like
domain: Indoleamine 2,3-dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=29580.00  Aligned_cols=1  Identities=0%  Similarity=-1.058  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~f~vs~~~GFLp~~Pl~~LP~~y~~w~~i~~~lp~Ll~~~~lr~~V~~LP~l~~~~l~~~~~~r~a~~~lsfla~aYi   80 (392)
T d2d0ta1           1 SKEYHIDEEVGFALPNPQENLPDFYNDWMFIAKHLPDLIESGQLRERVEKLNMLSIDHLTDHKSQRLARLVLGCITMAYV   80 (392)
T ss_dssp             CCSSSCBTTTBTSCSSCCCCCCGGGHHHHHHHHTHHHHHHTTCHHHHHHHCCCCCSTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             97334087768899984565786327999999987887755809999984786784433896999999999999999997


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 w~~~~~~~~~~LP~~Ia~Pl~~vs~~Lg~pP~ltYa~~~L~Nw~~~dp~~~~~~dNl~~i~~F~g~~dE~~F~lv~v~iE  160 (392)
T d2d0ta1          81 WGKGHGDVRKVLPRNIAVPYCQLSKKLELPPILVYADCVLANWKKKDPNKPLTYENMDVLFSFRDGDCSKGFFLVSLLVE  160 (392)
T ss_dssp             HTTSSSCCCSEECHHHHHHHHHHHHHHTCCSSCCHHHHTTSSEEESSTTSCSCGGGEEESCCSSTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             07899977778987888999999997499986516556310310058778887330556402789974135789879999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~l~~~~~~~~a~~~~d~~~~~~~l~~i~~~i~~i~~~~~~m~e~~~p~~fy~~~R~fi~G~k~~~~~p~GviYeg  240 (392)
T d2d0ta1         161 IAAASAIKVIPTVFKAMQMQERDTLLKALLEIASCLEKALQVFHQIHDHVNPKAFFSVLRIYLSGWKGNPQLSDGLVYEG  240 (392)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCHHHHHHTHHHHTCCBSSCGGGTTCBEETT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEEEECCCCCCCCCCEECC
T ss_conf             86446999999999998767758799999999999999999998502029855621423545322437776888730036


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~p~~~~G~SgaQSsii~~lD~~LGv~h~~~~~~l~~~L~~mR~YmP~~HR~Fl~~l~~~~~ir~~v~~~~~~~L~~a  320 (392)
T d2d0ta1         241 FWEDPKEFAGGSAGQSSVFQCFDVLLGIQQTAGGGHAAQFLQDMRRYMPPAHRNFLCSLESNPSVREFVLSKGDAGLREA  320 (392)
T ss_dssp             TCSSCBCBCCCCGGGCHHHHHHHHHTTCCSSCSSSHHHHHHHHHGGGSCHHHHHHHHHHHTSCCHHHHHHTTCCHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHH
T ss_conf             77776426788766664089999995785668875088999999985739999999999840436788870588899999


Q ss_pred             -----------------------------------------------------------------------C
Q ss_conf             -----------------------------------------------------------------------9
Q 003496          278 -----------------------------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------------------------~  278 (815)
                                                                                             .
T Consensus       321 y~~~v~~l~~FR~~H~~~v~~YIi~~~~~~~~~~~~~~~~~~~~~~gTGGT~~~~fLk~~rd~t~~~~~~~~  392 (392)
T d2d0ta1         321 YDACVKALVSLRSYHLQIVTKYILIPASQQPKENKTSEDPSKLEAKGTGGTDLMNFLKTVRSTTEKSLLKEG  392 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTHHHHTC-------------------CTHHHHHHHHHHHHHHHHTCSTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             999999999999999999999999886641223678888888888217885488999997767887761389

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=0  Score=29578.36  Aligned_cols=1  Identities=0%  Similarity=-1.489  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~e~Lt~~~~~~la~~lg~~~~~~~l~~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E   80 (392)
T d2pula1           1 KTPLYETLNESSAVALAVKLGLFPSKSTLTCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIE   80 (392)
T ss_dssp             CCCCCCCCCHHHHHHHHHHTTC-----CCEEEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCEEEEEECCCCHHCCCCCCCCCCHHHHHHH
T ss_conf             99877269989999999984998988873699807985276899995799848999617713034677788877899999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~L~~~~~~~p~~vP~v~~~d~~~~~lvmE~L~~~~~~~~~l~~~~~~~~~a~~lg~~La~~h~~~~~~~~~~~~~~~~  160 (392)
T d2pula1          81 SSALIRQGEHVPHLVPRVFYSDTEMAVTVMEDLSHLKIARKGLIEGENYPHLSQHIGEFLGKTLFYSSDYALEPKVKKQL  160 (392)
T ss_dssp             HHHHHHHHTTCGGGSCCEEEEETTTTEEEECCCTTSEEHHHHHHHTCCCTTHHHHHHHHHHHHHHHTSTTTSCHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC
T ss_conf             99999865057988552899859887798713577653022201542128999999999999998735033442111012


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~n~~l~~~~e~~~~~~py~~~~~~~~~~~~~~~~~~l~~d~~l~~~~~~l~~~~~~~~~~LiHGDl~~gNIlv~~~  240 (392)
T d2pula1         161 VKQFTNPELCDITERLVFTDPFFDHDTNDFEEELRPFVEKLWNNDSVKIEAAKLKKSFLTSAETLIHGDLHTGSIFASEH  240 (392)
T ss_dssp             HHHTCCHHHHHHHHHHTTTGGGTTCTTCCCCGGGHHHHHHHHTCHHHHHHHHHHHHHHHHBCCEEECSCCCGGGEEECSS
T ss_pred             CCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCEEECCC
T ss_conf             33446578887777640104788988741065455778765520789999999874323688600335776784667599


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~vID~E~a~~G~~~~Dlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~  320 (392)
T d2pula1         241 ETKVIDPEFAFYGPIGFDVGQFIANLFLNALSRDGADREPLYEHVNQVWETFEETFSEAWQKDSLDVYANIDGYLTDTLS  320 (392)
T ss_dssp             CEEECCCTTCEEECTHHHHHHHHHHHHHHHHHSCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTTSTTHHHHHHH
T ss_pred             CEEEECHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf             30895226522287899999999999999740663034568999999999999999999876165500034899999999


Q ss_pred             -----------------------------------------------------------------------C
Q ss_conf             -----------------------------------------------------------------------9
Q 003496          278 -----------------------------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------------------------~  278 (815)
                                                                                             .
T Consensus       321 ~~~~d~~~~~g~~~~rr~~g~a~~~d~~~i~~~~~r~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~  392 (392)
T d2pula1         321 HIFEEAIGFAGCELIRRTIGLAHVADLDTIVPFDKRIGRKRLALETGTAFIEKRSEFKTITDVIELFKLLVK  392 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSCCHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf             999999998889999987341444421315798889999999999999999615512999999999999709

>d1xima_ c.1.15.3 (A:) D-xylose isomerase {Actinoplanes missouriensis [TaxId: 1866]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: Xylose isomerase
domain: D-xylose isomerase
species: Actinoplanes missouriensis [TaxId: 1866]

Probab=100.00  E-value=0  Score=29577.53  Aligned_cols=1  Identities=0%  Similarity=-0.659  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~kfs~g~Wt~~~~g~d~FG~~tr~~~~~~e~~~~l~~lG~~g~~fHd~dl~P~~~~~~~~~~~~~~~k~~l~~t   80 (392)
T d1xima_           1 VQATREDKFSFGLWTVGWQARDAFGDATRTALDPVEAVHKLAEIGAYGITFHDDDLVPFGSDAQTRDGIIAGFKKALDET   80 (392)
T ss_dssp             CCCCGGGCEEEEHHHHTCCCCBTTBCCSSCCCCHHHHHHHHHHHTCSEEECBHHHHSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             99986673579960366768799998877754799999999985998686067877888998788999999999999863


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 Gl~~~~~t~nlf~~p~f~~Ga~TsPD~~vR~~Ai~~~k~aID~aaeLGa~~~v~W~G~~G~~~~~~~d~~~~~~~~~e~l  160 (392)
T d1xima_          81 GLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLGAELGAKTLVLWGGREGAEYDSAKDVSAALDRYREAL  160 (392)
T ss_dssp             TCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEEECTTSEESSGGGCCHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             98234663342447143158877939999999999999999999995898379637877667876558999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~v~dya~d~g~gv~~~IEpKP~EP~~~~~i~d~~~al~~i~~vg~p~~vgvnlD~gH~~~ag~~~~~~ia~a~~~gkL~  240 (392)
T d1xima_         161 NLLAQYSEDRGYGLRFAIEPKPNEPRGDILLPTAGHAIAFVQELERPELFGINPETGHEQMSNLNFTQGIAQALWHKKLF  240 (392)
T ss_dssp             HHHHHHHHHHTCCCEEEEECCSSSSSSEESSCSHHHHHHHHTTSSSGGGEEECCBHHHHHTTTCCHHHHHHHHHHHTCBC
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCHHHHHHHHHHCCCEE
T ss_conf             99999887508885598603778887543407799999999971990036674113245433798579999998659789


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 hvHlND~~~~~~D~DL~~Gs~~~~~~~~l~~~l~~g~~g~~~~~G~~~fD~~~~r~~~~~~~~~~~~~~~~~~~~l~~~a  320 (392)
T d1xima_         241 HIDLNGQHGPKFDQDLVFGHGDLLNAFSLVDLLENGPDGAPAYDGPRHFDYKPSRTEDYDGVWESAKANIRMYLLLKERA  320 (392)
T ss_dssp             CCEECBCCSSSSCCCBCTTSSSHHHHHHHHHHHHSCGGGSCSCCSCEEECCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99748998989888988898788899999999984777776777875402587677871069999999999999999999


Q ss_pred             -----------------------------------------------------------------------C
Q ss_conf             -----------------------------------------------------------------------9
Q 003496          278 -----------------------------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------------------------~  278 (815)
                                                                                             .
T Consensus       321 ~~l~~d~~~~~al~a~~~~~~~~~tl~~~~~~~~~~a~~~~~~~~~~~~~~~rg~~~~~l~q~~~~~l~~~~  392 (392)
T d1xima_         321 KAFRADPEVQEALAASKVAELKTPTLNPGEGYAELLADRSAFEDYDADAVGAKGFGFVKLNQLAIEHLLGAR  392 (392)
T ss_dssp             HHHHHCHHHHHHHHHTTSGGGGSCSSCTTCCHHHHHHCGGGTTTCCHHHHHTSCCCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCC
T ss_conf             998778788999998665663376556564468998767533346877786534369999999999972689

>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=0  Score=29575.05  Aligned_cols=1  Identities=0%  Similarity=-0.327  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~   80 (392)
T d1yvua2           1 KLNFKDTVLDAKGKNTKVITNLRKFLELCRPFVKKDVLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSL   80 (392)
T ss_dssp             ECCCCCCEECSSCCEECCSSCCHHHHHHCCCCCSCSEEEEEEEEEEC-----CHHHHHHHHHHHHHHTTTCEEEEEEEEE
T ss_pred             CCCCHHHEECCCCCCCEEEECCEEHHHHCCCCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEECCCCCCE
T ss_conf             92110210135899742223320224324732356634424789999631066799999999999986292645788671


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~Y~~IK~~~~~~gIptQ~i~~~tl~~~~~~~~~~NIa  160 (392)
T d1yvua2          81 ILAQTREEAKEKLIPVINKIKDVDLVIVFLEEYPKVDPYKSFLLYDFVKRELLKKMIPSQVILNRTLKNENLKFVLLNVA  160 (392)
T ss_dssp             EECSSTTHHHHHHHHHHTTTSSCSEEEEEEC----------CHHHHHHHHHHHHTTCCCEEEEHHHHHHSCHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECHHHCCCCCCHHHHHHHH
T ss_conf             31277511599999998402677789999768888665554047999999985499664898866616898358999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 lqinaKlGGipw~l~~~~~~~tmiIGiDv~h~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ee~~~~~~~~~l~~  240 (392)
T d1yvua2         161 EQVLAKTGNIPYKLKEIEGKVDAFVGIDISRITRDGKTVNAVAFTKIFNSKGELVRYYLTSYPAFGEKLTEKAIGDVFSL  240 (392)
T ss_dssp             HHHHHHTTCCSCEESCCTTCCSEEEEECEEECCCSSSCCCEEEEEEEECTTSCEEEEEEEEECSCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             99999849834688788999759999998715888984638999999868997789998854776078999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~P~rIIi~RdG~~~~~El~~i~~a~~~~~pki~~IvV~Krh~~Rff~~~~~~~Gt~v~~~~~~~~~~~s~~~~  320 (392)
T d1yvua2         241 LEKLGFKKGSKIVVHRDGRLYRDEVAAFKKYGELYGYSLELLEIIKRNNPRFFSNEKFIKGYFYKLSEDSVILATYNQVY  320 (392)
T ss_dssp             HHHTTCCTTCEEEEEESSCCCHHHHHHHHHHHHHHTCEEEEEEEECSSCCCEECSCSCCTTEEEEBSSSEEEECCSCCCS
T ss_pred             HHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCEEECCCCCCCCCCEEECCCCEEEEEECCCCC
T ss_conf             99964999866999958877379999999999864995899999815882656789999998771798929999768857


Q ss_pred             -----------------------------------------------------------------------C
Q ss_conf             -----------------------------------------------------------------------9
Q 003496          278 -----------------------------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------------------------~  278 (815)
                                                                                             -
T Consensus       321 qGT~rP~~Y~vl~d~~~~d~l~~lt~~Lc~l~~~~t~svslPapi~YA~~lA~~~r~~~~p~~~~~~~~~~l  392 (392)
T d1yvua2         321 EGTHQPIKVRKVYGELPVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIEPIKKEGDIMYWL  392 (392)
T ss_dssp             TTCCCCEEEEEEECSSCHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTCSSCCEEEESCCTTC
T ss_pred             CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             877788589998898998999999999775126718998007799999999999751178654575524219

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=29504.23  Aligned_cols=1  Identities=100%  Similarity=0.205  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 k~~T~~vh~g~~~~~~~g~v~pPi~~sst~~f~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEg~~~a~~~~   80 (391)
T d1cl1a_           1 KLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFP   80 (391)
T ss_dssp             CHHHHHHHTTCCHHHHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTTTTCCCCTTTCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred             CCCCCEECCCCCCCCCCCCCCCCEECCCCEEECCHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             91400360898999889984498548885362898999987527766866767899865999999999981995279851


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~d~~~~~~~i~~~t~~i~~EtpsNP~l~v~  160 (391)
T d1cl1a_          81 CGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVH  160 (391)
T ss_dssp             SHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGTCCTTEEEEEEESSCTTTCCCC
T ss_pred             CCCCEEEEHHHCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf             50001110222046778769983355520133322011233333200267311122233345553355303576532112


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~  240 (391)
T d1cl1a_         161 DVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMV  240 (391)
T ss_dssp             CHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCCCCCEEEEECCHHCCCCCCCCCCCEECCCCCCCCCHHHHHCCCCCC
T ss_conf             32789998874157827998534332322111353340677623100036653334420003543210001111001357


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~p~~a~ll~rgl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~e~~  320 (391)
T d1cl1a_         241 DADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEEL  320 (391)
T ss_dssp             CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCHHHH
T ss_conf             85120244435316788999999999999988874465433333222204568988630589876402453388899999


Q ss_pred             ----------------------------------------------------------------------C
Q ss_conf             ----------------------------------------------------------------------9
Q 003496          278 ----------------------------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------------------------~  278 (815)
                                                                                            -
T Consensus       321 ~~f~d~L~l~~~a~SlG~~~SLi~~~~~~~~~~~~~~~~~gi~~~liRlSVGlEd~eDLi~Dl~~AL~~i~  391 (391)
T d1cl1a_         321 ANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFARIV  391 (391)
T ss_dssp             HHHHTTCSSCBCCSCCCSSSCEEEEECHHHHHHTSTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHCCCCCEEEECCCCCCCCEECCCCCCCCCCCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf             99997499265856778876533478222343579247659996979999561999999999999999669

>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: TDP-epi-vancosaminyltransferase GtfA
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=100.00  E-value=0  Score=29500.51  Aligned_cols=1  Identities=0%  Similarity=-0.860  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 mril~~~~gt~Ghi~P~laLA~~L~~rGh~V~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (391)
T d1pn3a_           1 MRVLITGCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVVTEVVA   80 (391)
T ss_dssp             CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEECSSCSSGGGSCTTCCCTTCGGGHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCEEEECCCCHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf             97999858873689999999999998899899997803676898779848987836877734856666999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~l~~~~~~~D~vi~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (391)
T d1pn3a_          81 EWFDKVPAAIEGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPSEQSQAERDMYNQGADRLFGDAVNSHRASI  160 (391)
T ss_dssp             HHHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSGGGSCHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999730798478734471378999999980876488531224455312220056788999888778899999874


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  240 (391)
T d1pn3a_         161 GLPPVEHLYDYGYTDQPWLAADPVLSPLRPTDLGTVQTGAWILPDERPLSAELEAFLAAGSTPVYVGFGSSSRPATADAA  240 (391)
T ss_dssp             SCCCCCCHHHHHHCSSCEECSCTTTSCCCTTCCSCCBCCCCCCCCCCCCCHHHHHHTTSSSCCEEEECTTCCSTHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCEEECCCHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCHHHHH
T ss_conf             37663200024566640231542431157777771565686567655677888642115897278722431223278999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~p~~~ll~~a~~~v~hgG~~t~~Eal~~G~P~v~~P~~~d~~~  320 (391)
T d1pn3a_         241 KMAIKAVRASGRRIVLSRGWADLVLPDDGADCFVVGEVNLQELFGRVAAAIHHDSAGTTLLAMRAGIPQIVVRRVVDNVV  320 (391)
T ss_dssp             HHHHHHHHHTTCCEEEECTTTTCCCSSCCTTCCEESSCCHHHHHTTSSCEEEESCHHHHHHHHHHTCCEEEECSSCCBTT
T ss_pred             HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHCCEEEECCCHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf             99999998569779994364333445688988995446879998425489852743799999982886899335567745


Q ss_pred             ----------------------------------------------------------------------C
Q ss_conf             ----------------------------------------------------------------------9
Q 003496          278 ----------------------------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------------------------~  278 (815)
                                                                                            .
T Consensus       321 eQ~~nA~~l~~~G~g~~l~~~~~~~~~l~~~i~~~l~~~~r~~a~~~a~~~~~~g~~~aa~~i~~~l~~~~  391 (391)
T d1pn3a_         321 EQAYHADRVAELGVGVAVDGPVPTIDSLSAALDTALAPEIRARATTVADTIRADGTTVAAQLLFDAVSLEK  391 (391)
T ss_dssp             BCCHHHHHHHHHTSEEEECCSSCCHHHHHHHHHHHTSTTHHHHHHHHGGGSCSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf             29999999998798897685789999999999998399999999999999885279999999999987459

>d1nt4a_ c.60.1.2 (A:) Glucose-1-phosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate mutase-like
superfamily: Phosphoglycerate mutase-like
family: Histidine acid phosphatase
domain: Glucose-1-phosphatase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=29498.57  Aligned_cols=1  Identities=0%  Similarity=-1.356  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~vP~g~~L~~V~vl~RHG~R~P~~~~~~~~~~~~~~~~~~~~~~~g~LT~~G~~q~~~lG~~lr~~Y~~~~~l~~~~~~   80 (391)
T d1nt4a_           1 QTVPEGYQLQQVLMMSRANLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECP   80 (391)
T ss_dssp             CCCCTTEEEEEEEEEECCCCBCCCGGGHHHHHHTCSSCCCCCSSCTTCBCHHHHHHHHHHHHHHHHHHHHTTSSCSSSCC
T ss_pred             CCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             99899998849999973867999988775313477344778999856110889999999999999998760677787778


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~v~vrst~~~Rt~~SA~afl~Gl~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (391)
T d1nt4a_          81 PPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQ  160 (391)
T ss_dssp             CTTSEEEEECSSHHHHHHHHHHHHHHSTTSCCCEECCSCCSSCCTTTCCCCCCCCSHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             70005886178719999999999972788777756443457777666775456652106788787764310243139999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (391)
T d1nt4a_         161 LLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVL  240 (391)
T ss_dssp             HHHHHHTGGGSTTTTTTCCCCTTTCCCEEECCTTSCCEEESHHHHHHHHHHHHHHHHHTTCCTTTGGGGTSCSTTHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf             99997633022144555555688888888875324766675077776599999999984899997434676769999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~~k~~l~s~HD~ti~~~l~aLgl~~~~~p~~~~~~p~~s~~  320 (391)
T d1nt4a_         241 SKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKI  320 (391)
T ss_dssp             HHHHHHHHHHHHCSHHHHHHHTHHHHHHHHHHTTTTTTTSCSEEEEECCHHHHHHHHHHTTBCCCCCTTCSSSSCTTCEE
T ss_pred             HHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEE
T ss_conf             99999999986287688764022899999999873589886279997156689999998389866788877888976638


Q ss_pred             ----------------------------------------------------------------------C
Q ss_conf             ----------------------------------------------------------------------9
Q 003496          278 ----------------------------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------------------------~  278 (815)
                                                                                            .
T Consensus       321 ~fEl~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gC~~~~~~lCpl~~F~~~~~~~i~  391 (391)
T d1nt4a_         321 VFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDADGFCPMDKFDSVLNEAVK  391 (391)
T ss_dssp             EEEEEEETTTTEEEEEEEEEECCHHHHHHTCCCCSSSCCEEEECCBTTBCCCTTSCEEHHHHHHHHHHHCC
T ss_pred             EEEEEECCCCCCCEEEEEEECCCCHHHCCCCCCCEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             99998617888755999986376132035665430103774156479988999996689999999999739

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=29497.77  Aligned_cols=1  Identities=0%  Similarity=-1.423  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~iYlD~aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~   80 (391)
T d1p3wa_           1 KLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNL   80 (391)
T ss_dssp             CCSEECBTTTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHH
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHH
T ss_conf             97498537422679999999999999864665787316659999999999999999999739997819997988999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~  160 (391)
T d1p3wa_          81 AIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQ  160 (391)
T ss_dssp             HHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCCBC
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCEECHHHHHHHCCCCCEEEEEECCCCCCEEEC
T ss_conf             99642353057998899924654138999999997598899967887872768999975799948999978978881077


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~g~~g~g~~~~~~~~~~~~~~~~~gg~~~~~~~~  240 (391)
T d1p3wa_         161 DIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRS  240 (391)
T ss_dssp             CHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTBCCCCCSSCSSCTTTTTSC
T ss_pred             CHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEECCHHCCCCCCCCCCCCCCCCCC
T ss_conf             78999998555895799730122577564202104653212231005788559999855021156875468856667515


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~  320 (391)
T d1p3wa_         241 GTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLA  320 (391)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETTSCHHHHHHHTTTEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCEEEEEEECCCCHHHHHHHHCCCE
T ss_conf             74023334453000467887766789999999999999877624806502444567518999857877699999718977


Q ss_pred             ----------------------------------------------------------------------C
Q ss_conf             ----------------------------------------------------------------------9
Q 003496          278 ----------------------------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------------------------~  278 (815)
                                                                                            .
T Consensus       321 v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~~~~~~~~~~~  391 (391)
T d1p3wa_         321 VSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQ  391 (391)
T ss_dssp             CBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHCC
T ss_pred             EECCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCC
T ss_conf             98262003776540599997399810069889996678899999999999999999999973967786329

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=100.00  E-value=0  Score=29497.08  Aligned_cols=1  Identities=0%  Similarity=-0.128  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~p~~~~~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~   80 (391)
T d1gpea1           1 YLPAQQIDVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTT   80 (391)
T ss_dssp             CCCCCCCCCGGGSBCCGGGTTTCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTST
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHCCC
T ss_conf             98600145554112791212699664999896789999999998787982999837889888873040888998860897


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~dw~~~t~p~~~~r~~~~~~G~~lGGsS~in~~~~~rg~~~d~~~w~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~  160 (391)
T d1gpea1          81 VDQNYLTVPLINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAA  160 (391)
T ss_dssp             TBCCEECCCCTTSCCCEECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHH
T ss_pred             CCCCCEEEECCCCCEEEECEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHCCC
T ss_conf             66683413567995741121112576551430378603522334410037998644320378888765315886011035


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~r~s~a~~~~~p~  240 (391)
T d1gpea1         161 GHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPN  240 (391)
T ss_dssp             TCCCCGGGCCBSSSEEEBCCCCSSCBCTHHHHHHHHHHHTTCCBSCCTTSSCCCEEECCEESBCTTCCBCCHHHHHTTTT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHHCCCCC
T ss_conf             66766445678886432445565545789999999887548721201225765432222211320333442122025763


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~r~nl~i~t~a~V~rIl~~~~~~g~ra~GV~~~~~~g~~~~v~A~keVILaAGai~SP~LLl~SGIGp~~~L~~~gI~~  320 (391)
T d1gpea1         241 YQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQ  320 (391)
T ss_dssp             TTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCCC
T ss_pred             CCCHHHHHHCCCEEEEEEEECCCCCCEEEEEEEECCCCEEEEEEECCEEEEECCHHCCHHHHHHCCCCCHHHHHHCCCCE
T ss_conf             22013443305325688650788874688658833897278998488799926120466899866797388998779988


Q ss_pred             ----------------------------------------------------------------------C
Q ss_conf             ----------------------------------------------------------------------9
Q 003496          278 ----------------------------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------------------------~  278 (815)
                                                                                            .
T Consensus       321 v~dlP~Gvg~nl~dh~~~~v~~~~~v~~~~~l~~~~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (391)
T d1gpea1         321 LLDLPVGICSMMSRELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDYAKSA  391 (391)
T ss_dssp             SEECCTTCTCBSCGGGTCSBCTTCBBTTCBSEEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEECCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99897541215346766555034345477774331245686220432234443557666689998761249

>d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: 4-alpha-glucanotransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=0  Score=29496.55  Aligned_cols=1  Identities=0%  Similarity=-0.959  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~v~Yei~~~~F~d~~~dg~Gd~~gi~~kLdyl~~LGv~~I~l~Pi~~~~~~~GY~~~d~~~vd~~~Gt~~d~~~lv~~~h   80 (391)
T d1lwha2           1 MIGYQIYVRSFRDGNLDGVGDFRGLKNAVSYLKELGIDFVWLMPVFSSISFHGYDVVDFYSFKAEYGSEREFKEMIEAFH   80 (391)
T ss_dssp             CCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHTTCSEEEECCCEECSSSSCCSCSEEEEECGGGCCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             97999815610588999860999999855999975999899797987999999785577874712399999999999997


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~  160 (391)
T d1lwha2          81 DSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKETDLDERREWDGEKIWHPLEDGRFYRGLFGPFSPDLNYD  160 (391)
T ss_dssp             HTTCEEEEEECTTBCCTTSHHHHHHHTTCHHHHTTBCBCCTTCCTTCBCSSSCCBCEEECTTSCEEECTTCTTSCBBCTT
T ss_pred             HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             35987844331013334444433223677655664200377545676546788754333677751236668867753433


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 n~~v~~~i~~~~~~w~e~gvDGfR~Daa~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  240 (391)
T d1lwha2         161 NPQVFDEMKRLVLHLLDMGVDGFRFDAAKHMRDTIEQNVRFWKYFLSDLKGIFLAEIWAEARMVDEHGRIFGYMLNFDTS  240 (391)
T ss_dssp             SHHHHHHHHHHHHHHHHHTCCEEEETTGGGSSSSHHHHHHHHHHHHTTCCSEEEECCCSCSSSHHHHHHHHEEEECHHHH
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEECCCHH
T ss_conf             41146899998888760699700105588877764211588999998765300255411200011034446731134178


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nhD~~~~~~~~~~~~~~~~~~a~~lllt~pG~P~IyyGdE~G~~~  320 (391)
T d1lwha2         241 HCIKEAVWKENTRVLIESIERAVIAKDYLPVNFTSNHDMSRLASFEGGFSKEKIKLSISILFTLPGVPLVFYGDELGMKG  320 (391)
T ss_dssp             HHHHHHHHHTCTHHHHHHHHHHTSSCSSEEEEESCCTTSCCGGGGGGCCCHHHHHHHHHHHTTSSSEEEEETTGGGTCCC
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCHHCCCCC
T ss_conf             89999874034899999998631467765000001555543334123201567999999862689987886143027768


Q ss_pred             ----------------------------------------------------------------------C
Q ss_conf             ----------------------------------------------------------------------9
Q 003496          278 ----------------------------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------------------------~  278 (815)
                                                                                            +
T Consensus       321 ~~~~~~~~~~r~pm~W~~~~~~~~~~~~~~~~~~~~~~~~nve~q~~~~~s~~~~~~~Li~lRk~~~al~r  391 (391)
T d1lwha2         321 VYQKPNTEVVLDPFPWNESMCVEGQTFWKWPAYNGPFSGISVEYQKRDPDSILSHTLGWTRFRKENQWIDR  391 (391)
T ss_dssp             CCCSSCGGGGSCCCCSSTTSCSTTCCCSSCCSSCCSSSSCSHHHHTTCTTSHHHHHHHHHHHHHTCGGGGG
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCHHHCC
T ss_conf             98899865311888878777788888887867897423117999875816899999999999813856239

>d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease, catalytic domain {Bacillus pasteurii [TaxId: 1474]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: alpha-subunit of urease, catalytic domain
domain: alpha-subunit of urease, catalytic domain
species: Bacillus pasteurii [TaxId: 1474]

Probab=100.00  E-value=0  Score=29434.21  Aligned_cols=1  Identities=0%  Similarity=-0.625  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 GgiDtHvHfi~Pqq~~~al~sGiTT~~GgGtGpa~gt~att~tpG~~~i~~ml~a~d~~P~N~g~~gkGn~s~~~~l~eq   80 (390)
T d4ubpc2           1 GGIDTHVHFINPDQVDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKGHGSSIAPIMEQ   80 (390)
T ss_dssp             CEEEEEEECCCTTHHHHHHHTTEEEEEEECCSSCHHHHHSSCCCHHHHHHHHHHHHTTCSSEEEEEEECCCSSHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
T ss_conf             98220003348878999985697366468557777878745689888999999865527823115232666986799999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 i~aGa~GlKiHEDwGatpa~id~~L~vad~~dvqv~iHtDtlNE~gfve~T~~a~~gRtiH~~HtEGaGGGHaPDii~~~  160 (390)
T d4ubpc2          81 IDAGAAGLKIHEDWGATPASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTLRAINGRVIHSFHVEGAGGGHAPDIMAMA  160 (390)
T ss_dssp             HHHTCCEEEEEGGGCCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHHHHTTCCEEETTTTSTTSSSTTTGGGGG
T ss_pred             HHHHHHEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHC
T ss_conf             98655005013113647789999999864059268985387510101165899867962111467888889883268763


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 g~~nvLpsSTnPT~Pyt~nt~~EhldM~MvcHhL~~~ipeDvafAesRiR~eTiaAEdvLHD~GaiSi~sSDsQaMGRvg  240 (390)
T d4ubpc2         161 GHPNVLPSSTNPTRPFTVNTIDEHLDMLMVCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISMMSTDALAMGRAG  240 (390)
T ss_dssp             GSTTEEEBCCSTTSSCBTTHHHHHHHHHHHHHTCCTTSHHHHHHHHHHSCHHHHHHHHHHHHTTSSCBCCCCBTTSSCTT
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCC
T ss_conf             77865578999887886672666367377641479888026777763033012326777652486444136753246400


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 Evi~Rtwq~A~kmk~qrG~l~~d~~~~DN~RvkRYiAKyTINPAIahGish~VGSvE~GKlADG~a~~~tsvtFVSqaAi  320 (390)
T d4ubpc2         241 EMVLRTWQTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADGDLIHDTNITFMSKSSI  320 (390)
T ss_dssp             CHHHHHHHHHHHHHHHHCSCTTCCSSCCHHHHHHHHHTTTHHHHHHHTCTTTSSSCCTTSBCCTTHHHHSCEEEECHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHH
T ss_conf             67776778898877751489875566777013202530246806750741125764678434876345764899858887


Q ss_pred             ---------------------------------------------------------------------C
Q ss_conf             ---------------------------------------------------------------------9
Q 003496          278 ---------------------------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------------------------~  278 (815)
                                                                                           .
T Consensus       321 d~Gi~e~LGL~k~l~pVkn~R~ItKkDMk~Nda~P~IeVDPETYeV~aDGelltcePA~~LPLAQRYFLF  390 (390)
T d4ubpc2         321 QQGVPAKLGLKRRIGTVKNCRNIGKKDMKWNDVTTDIDINPETYEVKVDGEVLTCEPVKELPMAQRYFLF  390 (390)
T ss_dssp             HTTHHHHHTCCSEEEECCCCSSCCGGGSTTCCCCCCCEECTTTCCEEETTEECCCCCBSCCSSSTTTCCC
T ss_pred             HCCCHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCEEECCCCEEEEECCEEECCCCCCCCCCHHCCCCC
T ss_conf             5777677088644886058887786785015789983689986689889999046876756630120177

>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=0  Score=29430.09  Aligned_cols=1  Identities=0%  Similarity=-1.391  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 mktl~d~~~~~k~Vl~R~D~NvPi~~g~i~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~Sl~~v~~~l~~~   80 (390)
T d1v6sa_           1 MRTLLDLDPKGKRVLVRVDYNVPVQDGKVQDETRILESLPTLRHLLAGGASLVLLSHLGRPKGPDPKYSLAPVGEALRAH   80 (390)
T ss_dssp             CCBGGGSCCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCSSCCGGGCSHHHHHHHHHH
T ss_pred             CCCHHHCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             97412258789999999403777559908976899999999999997899899995589999989761379999999752


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 l~~~v~~~~~~~~~~~~~~~~~l~~g~i~lLENvRF~~~E~~nd~~f~~~La~l~DiyVNDAF~~aHR~haS~vgi~~~l  160 (390)
T d1v6sa_          81 LPEARFAPFPPGSEEARREAEALRPGEVLLLENVRFEPGEEKNDPELSARYARLGEAFVLDAFGSAHRAHASVVGVARLL  160 (390)
T ss_dssp             CTTEEECCSCTTSHHHHHHHHTCCTTCEEECSCGGGSTTTTTTCHHHHHHHGGGCSEEEECCGGGTTSCCCCCCCGGGTS
T ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCEEEEHHHHHCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHCCCCCCCHHHH
T ss_conf             46532653101122122222346665378651123245521165277776652476589631466665056622501333


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ps~aG~l~ekEi~~L~~~l~~~~rP~vaIlGGaKvsdKi~~i~~l~~k~D~iiigG~mAntFL~a~G~~IG~sl~e~~~~  240 (390)
T d1v6sa_         161 PAYAGFLMEKEVRALSRLLKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRL  240 (390)
T ss_dssp             CEEECHHHHHHHHHHHTTTSSCCSSEEEEECCSCGGGTHHHHHHHGGGCSEEEECSTTHHHHHHHTTCBCTTCCCCGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCCHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf             45668999999999999985446750899834640236999999997525666644177999997597668634431146


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~a~~~~~~i~lp~dv~~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~aktI~WNGPmGvfE  320 (390)
T d1v6sa_         241 DLAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFARALEGARTVFWNGPMGVFE  320 (390)
T ss_dssp             HHHHHHHHHHHHHTCEEECCSEEEEESSCCTTCCCEEEETTBCCTTCEEEEECHHHHHHHHHHTTTCSEEEEESCSSCTT
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf             66676777654302333333211220123677532356433310024432000134677887750264489975644502


Q ss_pred             ---------------------------------------------------------------------C
Q ss_conf             ---------------------------------------------------------------------9
Q 003496          278 ---------------------------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------------------------~  278 (815)
                                                                                           .
T Consensus       321 ~~~F~~GT~~i~~aia~~~~a~sIiGGGdT~aai~~~g~~~~fshVSTGGGA~Le~L~G~~LPgi~aL~~  390 (390)
T d1v6sa_         321 VPPFDEGTLAVGQAIAALEGAFTVVGGGDSVAAVNRLGLKERFGHVSTGGGASLEFLEKGTLPGLEVLEG  390 (390)
T ss_dssp             STTTTHHHHHHHHHHHTCSSCEEEEESHHHHHHHHTTTCGGGSSEECCSSSHHHHHHHHSCCHHHHTTCC
T ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCCCHHHHCC
T ss_conf             5743079999999998558997999488999999974986787179577899999977999642143159

>d1nsca_ b.68.1.1 (A:) Influenza neuraminidase {Influenza B virus, different strains [TaxId: 11520]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Sialidases
family: Sialidases (neuraminidases)
domain: Influenza neuraminidase
species: Influenza B virus, different strains [TaxId: 11520]

Probab=100.00  E-value=0  Score=29428.74  Aligned_cols=1  Identities=0%  Similarity=-0.394  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~r~ge~~~n~~~lVtREPyVSC~p~eC~~FaL~QGt~l~~kHSNgTi~DRsp~RtL   80 (390)
T d1nsca_           1 EPEWTYPRLSCQGSTFQKALLISPHRFGEARGNSAPLIIREPFIACGPKECKHFALTHYAAQPGGYYNGTREDRNKLRHL   80 (390)
T ss_dssp             CCCCCCCCCBCSCSSEEEEEEECGGGGCCTTSCCCBEEEEEEEEEECSSCEEEEEEEEEEESSSSCCTTTTCSCCSSCEE
T ss_pred             CCCCCCCCEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEECCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHEE
T ss_conf             97554451210452123420227210254446674069727601018430145862054111686668841456411201


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~s~~lG~~P~~~ns~f~~vaWSsssCHDGk~wl~i~vtG~d~nA~A~~~Y~g~~tdsI~SW~~nILRTQESeCvCinG~C  160 (390)
T d1nsca_          81 ISVKLGKIPTVENSIFHMAAWSGSACHDGREWTYIGVDGPDSNALIKIKYGEAYTDTYHSYANNILRTQESACNCIGGDC  160 (390)
T ss_dssp             EEEETTSCCBTTTCEEEEECSEEEEEECSSCEEEEEEESCGGGCEEEEEETTEEEEEEECSSSSCCEECSSCCEEETTEE
T ss_pred             EECCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEECCEEEEEHHHHHHHHCCCCCCCEEEECCEE
T ss_conf             22326799965663379987652433688724899878698872899998999964055334310200432048989989


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~vvMTDGpA~~~A~~ki~~i~eGkIi~~~~l~g~~~HiEECSC~Yp~~~~V~CVCRDNW~GsNRPvv~in~~~~s~~~gY  240 (390)
T d1nsca_         161 YLMITDGSASGISKCRFLKIREGRIIKEIFPTGRVEHTEECTCGFASNKTIECACRDNSYTAKRPFVKLNVETDTAEIRL  240 (390)
T ss_dssp             EEEEEEECTTSCEEEEEEEEETTEEEEEECCEESCSBCEEEEEEESSSSEEEEEEECSSSCSSCEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEE
T ss_conf             99992688778542589998456288776058886724752115899881699970788888998499545534145315


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 vCSGl~~DTPR~~D~s~tg~C~~n~~~G~~GVKGgf~~~~~~~~~~vW~GRTiS~~SRSGfE~~kV~~gw~~~~s~~~~~  320 (390)
T d1nsca_         241 MCTETYLDTPRPDDGSITGPCESNGDKGRGGIKGGFVHQRMASKIGRWYSRTMSKTERMGMELYVRYDGDPWTDSDALAH  320 (390)
T ss_dssp             CCCSSCCSSSCCCTTCCCSSTTCCCSCCSSCCCCCEEEEECSSCEEEEEEECSSSSSSEEEEEEEEESSCTTTCCCCCEE
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCEEE
T ss_conf             85366578999888887767888876888863565011012468874764420476667507999778987768620005


Q ss_pred             ---------------------------------------------------------------------C
Q ss_conf             ---------------------------------------------------------------------9
Q 003496          278 ---------------------------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------------------------~  278 (815)
                                                                                           -
T Consensus       321 ~q~iV~~~n~sgYSg~F~~~~k~C~~pCF~VElIRGrp~e~WTSnS~vvfCg~~s~~~~wswpDGA~i~l  390 (390)
T d1nsca_         321 SGVMVSMKEPGWYSFGFEIKDKKCDVPCIGIEMVHDGGKKTWHSAATAIYCLMGSGQLLWDTVTGVDMAL  390 (390)
T ss_dssp             EEEEEEEEEECCCEEEEEEECSSSEEEEEEEEEEECCCTTSCCEEEEEEEEECSSSCCCCCCCCCCCTTC
T ss_pred             EEEEEECCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCEECCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             7899953788862178998589853022899997288766501375699972589977866998656689

>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=0  Score=29425.71  Aligned_cols=1  Identities=0%  Similarity=0.437  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~g~~gg~~~pe~l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~~grpTPL~~~~~Ls~~lg~~IylK~E~ln   80 (390)
T d1qopb_           1 TTLLNPYFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTTLYLKREDLL   80 (390)
T ss_dssp             CCSSCCEETTEEEEESCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEECHHHHTTSSEEEEEEEGGGS
T ss_pred             CCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHEHHHHHHHHCCEEEEEEECCC
T ss_conf             98777865683999687888999999999999997397899999999874489996553758654535977999971487


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ptGS~K~R~a~~~i~~A~~~G~~~iv~easaGN~g~a~A~aaa~~Gl~~~I~mp~~~~~~k~~~v~~m~~~GAeVv~v~~  160 (390)
T d1qopb_          81 HGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHS  160 (390)
T ss_dssp             TTSBTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEECS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECC
T ss_conf             44656604899999987543873023103477899999999985367459963320011235888999865966999527


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~e~~~q~~~~~g~~pD~vv~~vGgGs~~~G~~  240 (390)
T d1qopb_         161 GSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMF  240 (390)
T ss_dssp             TTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHTTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHEE
T ss_conf             85136676999999976333555530343234334654110156655012389999970986306886235410111100


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~f~~~~~~~~ig~ep~~~g~~~~~~~a~~~~g~~g~~~~~~~~~~~~~~g~~~~~~s~a~gl~~~~~~~~~~~l~~~g~  320 (390)
T d1qopb_         241 ADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGR  320 (390)
T ss_dssp             GGGTTCTTSEEEEEEEEETBGGGTBSCCHHHHSEEEEETEEEEEECBCTTSCBCCCCCSSGGGCCSSCCHHHHHHHHTTS
T ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf             11004663248613566356565444551035744554112454113688864443222455334662067899986286


Q ss_pred             ---------------------------------------------------------------------C
Q ss_conf             ---------------------------------------------------------------------9
Q 003496          278 ---------------------------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------------------------~  278 (815)
                                                                                           -
T Consensus       321 ~~~~~vtD~Ea~~a~~~La~~EGI~~a~Esa~Ava~Ai~~a~~~~~~~~~VVv~lsG~G~kD~~~~~~~l  390 (390)
T d1qopb_         321 ADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTVHDIL  390 (390)
T ss_dssp             SEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHHSTTSCEEEEEEECBBCGGGHHHHHHHC
T ss_pred             EEEEEECHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHC
T ss_conf             3999999999999999999966984168269999999998635579998899997889734799999639

>d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Iron-containing alcohol dehydrogenase
domain: Hypothetical oxidoreductase yqhD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=29423.50  Aligned_cols=1  Identities=0%  Similarity=-1.589  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~m~~f~f~~P~~I~fG~g~l~~l~~~~~~~~~vliV~~~~~~~~~g~~~~v~~~L~~~~~~~f~~v~~~p~~~~v~~~   80 (390)
T d1oj7a_           1 KAGLNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNA   80 (390)
T ss_dssp             CBCCCCEEEEEEEEEEESTTGGGGHHHHSCTTCEEEEEECSSHHHHHSHHHHHHHHTTTSEEEEECCCCSSCBHHHHHHH
T ss_pred             CCCCCCCEEECCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH
T ss_conf             99888808748986898569999999998679988999897168774399999997189947999282379999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~D~IIavGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagtgse~t~~avi~~~~~  160 (390)
T d1oj7a_          81 VKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTT  160 (390)
T ss_dssp             HHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCSSCGGGSSEEEEEETTT
T ss_pred             HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99976337877985478854408999999751874300344312466433467873335665443111243101124443


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~k~~~~~~~~~P~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~E~~~s~~~~~~~~~~~a~~~~~~~~~~l~~a~~~~~d  240 (390)
T d1oj7a_         161 GDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIHDRFAEGILLTLIEDGPKALKEPEN  240 (390)
T ss_dssp             TEEEEEECGGGSCSEEEECGGGGTTCCHHHHHHHHHHHHHHHHHHHSSSCBCCHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             CCEECCCHHHCCCCEEEEHHHHCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCC
T ss_conf             11000110000145046514430369744430322558888889871775321230367765555530134777760446


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~ar~~l~~as~~a~~~~~~~g~~~~g~~Hal~h~l~~~~~v~HG~~~ai~lp~v~~~~~~~~~~~~~~~a~~~~~~~~~  320 (390)
T d1oj7a_         241 YDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEG  320 (390)
T ss_dssp             HHHHHHHHHHHHHHSSSTTTTTSCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHCCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             89999888888998865540486666531344334310268765311233221332001111599999999995485469


Q ss_pred             ---------------------------------------------------------------------C
Q ss_conf             ---------------------------------------------------------------------9
Q 003496          278 ---------------------------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------------------------~  278 (815)
                                                                                           .
T Consensus       321 ~~~e~~~~~i~~i~~~~~~lglP~~L~e~Gv~~~~i~~la~~~~~~~~~~~~np~~l~~d~i~~il~~A~  390 (390)
T d1oj7a_         321 SDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRIYEAAR  390 (390)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTCCCSGGGGTCCSTTHHHHHHHHHHTTCSSBTTTTCBCHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHCC
T ss_conf             9699999999999999998498999899199999999999999863555309997899999999999509

>d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus sp., ksm-k38 [TaxId: 1409]

Probab=100.00  E-value=0  Score=29423.86  Aligned_cols=1  Identities=0%  Similarity=-1.790  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~i~~kLdyLk~LGvt~I~l~Pi~~~~~~~~~gY~~~d~~~~~~~~~~~~vd~~~Gt~   80 (390)
T d1ud2a2           1 DGLNGTMMQYYEWHLENDGQHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTK   80 (390)
T ss_dssp             CCCCCCEEECCCTTCCCSSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCH
T ss_pred             CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf             99777699844057788897799999979999976998899697803888889998866774445554457768889999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~efk~lV~~~H~~GI~VilDvV~NHt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (390)
T d1ud2a2          81 AQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHF  160 (390)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCGGGTTSSCCCCBCGGGE
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999999998558813898714554676630344420268654332345543445554556776677678776543445


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~dg~r~D~~~~~~~~~  240 (390)
T d1ud2a2         161 NGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWY  240 (390)
T ss_dssp             EEEEEETTTTEEEEEEETTCCCCSSCCCTTSCCCCCSSEEECTTSHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHHH
T ss_pred             CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCHHHCCHHH
T ss_conf             78876655777751211687655555422222222334410004889999988765301210124653334320067677


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (390)
T d1ud2a2         241 TSDWVRHQRNEADQDLFVVGEYWKDDVGALEFYLDEMNWEMSLFDVPLNYNFYRASQQGGSYDMRNILRGSLVEAHPMHA  320 (390)
T ss_dssp             HHHHHHHHHHHCSSCCEEEECCCCSCHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHHCTTSCGGGTTTTCHHHHCGGGE
T ss_pred             HHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCE
T ss_conf             88888887643202103411124786110101245432333203678889999875134469999987533033783326


Q ss_pred             ---------------------------------------------------------------------C
Q ss_conf             ---------------------------------------------------------------------9
Q 003496          278 ---------------------------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------------------------~  278 (815)
                                                                                           .
T Consensus       321 v~fl~nHD~~r~~~~~~~~~~~~~~~~~~~il~~~pG~P~iy~GdE~G~~~~~~~~~~d~i~~l~~~R~~  390 (390)
T d1ud2a2         321 VTFVDNHDTQPGESLESWVADWFKPLAYATILTREGGYPNVFYGDYYGIPNDNISAKKDMIDELLDARQN  390 (390)
T ss_dssp             EECSCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGGGTBCCCHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             8870277665400013675789999999999985799849974265097998985126888999997389

>d1sg6a_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Aspergillus nidulans [TaxId: 162425]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Dehydroquinate synthase, DHQS
domain: Dehydroquinate synthase, DHQS
species: Aspergillus nidulans [TaxId: 162425]

Probab=100.00  E-value=0  Score=29347.53  Aligned_cols=1  Identities=0%  Similarity=-0.993  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 p~~i~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ivtD~~v~~l~~~~v~~~l~~~~~~~~~~~~~~~~~~~~gE~~   80 (389)
T d1sg6a_           1 PTKISILGRESIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVS   80 (389)
T ss_dssp             CEEEEETTEEEEEEETTHHHHTHHHHHHHHSCCSEEEEEEEHHHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGG
T ss_pred             CCEEEECCCCCEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC
T ss_conf             91688769731898888078775999984179981899978965898999999999870742146762489981698452


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 Ks~~~~~~i~~~~~~~~~~~~r~d~IiaiGGG~v~D~ak~~A~~y~rgi~~i~vPTtlla~~Das~g~k~~in~~~~kn~  160 (389)
T d1sg6a_          81 KSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPLGKNL  160 (389)
T ss_dssp             SSHHHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHGGGCCEEEEEECSHHHHHTTTSSCEEEEEETTEEEE
T ss_pred             CCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCHHCCCCCCCCCEEEECCCCCCCE
T ss_conf             89999999999999628876777569996563477889999999855876367314021256653232134211366421


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~g~~~~P~~V~iD~~~l~tlP~r~~~aG~~e~ik~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~I  240 (389)
T d1sg6a_         161 IGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRREVTPGEHRFEGTEEILKARI  240 (389)
T ss_dssp             EEEECCCSEEEEEGGGGGTSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCCCCTTSCTTGGGHHHHHHHH
T ss_pred             EEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHH
T ss_conf             21012045552005554341799998634235553212687888899986999987544201201322104699999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~s~~~k~~iv~~d~~e~g~r~~ln~GHt~~HAlE~~~~~~~lHGEaVaiGml~~~~ls~~~g~l~~~~~~~i~~~l~~l  320 (389)
T d1sg6a_         241 LASARHKAYVVSADEREGGLRNLLNWGHSIGHAIEAILTPQILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAY  320 (389)
T ss_dssp             HHHHHHHHHHHHC-----CGGGGGGTTHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf             99999863202333443263310135466788887632234568889998899999999993799999999999999986


Q ss_pred             --------------------------------------------------------------------C
Q ss_conf             --------------------------------------------------------------------9
Q 003496          278 --------------------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------------------~  278 (815)
                                                                                          +
T Consensus       321 gLPt~l~dl~~~~~~~~~~~~~~~l~~~~~~DKK~~~~~i~~vl~~~iG~~~~~~~~~~~~~~i~~~L~  389 (389)
T d1sg6a_         321 GLPTSLKDARIRKLTAGKHCSVDQLMFNMALDKKNDGPKKKIVLLSAIGTPYETRASVVANEDIRVVLA  389 (389)
T ss_dssp             TCCCSTTCHHHHHHTTTCCCCHHHHHHHHHTCCE-------ECCEEETTEESSSSCEECCHHHHHHHCC
T ss_pred             CCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEECCCCCCHHHHHHHHC
T ss_conf             999654344200013434599999999986378857997899967457767663277599899999739

>d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: Lesion bypass DNA polymerase (Y-family), catalytic domain
domain: DNA polymerase eta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=29347.19  Aligned_cols=1  Identities=0%  Similarity=-0.959  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~~~~~~~~~~l~~~~~~~~~~~~vI~hiDmD~FyAsvE~~~~p~l~~~Pv~V~q~~~via~sYeAR~~GVk~gm~~~eA   80 (389)
T d1jiha2           1 MSKFTWKELIQLGSPSKAYESSLACIAHIDMNAFFAQVEQMRCGLSKEDPVVCVQWNSIIAVSYAARKYGISRMDTIQEA   80 (389)
T ss_dssp             CCSSBHHHHHGGGCTTTGGGSTTCCEEEEECTTHHHHHHHHHTTCCTTSCEEEEETTEEEEECHHHHTTTCCTTSCHHHH
T ss_pred             CCCCCHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCEEEEECCEEEEECHHHHHHCCCCCCCHHHH
T ss_conf             98413645877279752236877679997365089989967563526997799008869998999997199878929999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~k~CP~li~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~Yr~~S~~v~~il~~~~~~vE~~SIDEaflD  160 (389)
T d1jiha2          81 LKKCSNLIPIHTAVFKKGEDFWQYHDGCGSWVQDPAKQISVEDHKVSLEPYRRESRKALKIFKSACDLVERASIDEVFLD  160 (389)
T ss_dssp             HHHCTTCEEEECCEEETTCSSEECCTTCSTTCSCTTSCCCSSSEEECCHHHHHHHHHHHHHHHHHCSCEEEEETTEEEEE
T ss_pred             HHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEE
T ss_conf             98697636852121234444333344320001331001465326898899999999999999986888057416637897


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 lT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~  240 (389)
T d1jiha2         161 LGRICFNMLMFDNEYELTGDLKLKDALSNIREAFIGGNYDINSHLPLIPEKIKSLKFEGDVFNPEGRDLITDWDDVILAL  240 (389)
T ss_dssp             CHHHHHHHHHHCCSCBSSSSCBHHHHTHHHHHHHHHCCSCTTSBCCCCCGGGGGCCCCSEECCTTCCCSCCSHHHHHHHH
T ss_pred             CCHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             50023220355431000122112332212345433332233234456642111222244433433344444356654028


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 g~~ia~~IR~~I~~etGlt~S~GIa~NK~LAKlAs~~~KPngqtvl~~~~v~~fl~~~~lpi~ki~GIG~k~~kkL~~~l  320 (389)
T d1jiha2         241 GSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKNDCLLDFLDCGKFEITSFWTLGGVLGKELIDVL  320 (389)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCEEEEESSHHHHHHHHTTTCSSCEEECCGGGHHHHHTSSSCCGGGSGGGSSHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHH
T ss_conf             99999999999999869984302455289999988744988558667899999997267872020787889999999984


Q ss_pred             --------------------------------------------------------------------C
Q ss_conf             --------------------------------------------------------------------9
Q 003496          278 --------------------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------------------~  278 (815)
                                                                                          .
T Consensus       321 gi~t~~di~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~f~l~Rg~~~~pv~~r  389 (389)
T d1jiha2         321 DLPHENSIKHIRETWPDNAGQLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLSRGRYGLPLSSR  389 (389)
T ss_dssp             TCCSSSHHHHHHHHSCSCHHHHHHHHHHHHTSTTCCTTTCSSCTTCHHHHHHHHHHHTTTCCCCCCCCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf             897613399987653688999855000655541068776555753244248888644147638888889

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=0  Score=29346.60  Aligned_cols=1  Identities=0%  Similarity=-0.593  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~r~~~~~~~~i~~l~~~a~~~~~~g~~vi~l~~G~p~~~~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~   80 (389)
T d2gb3a1           1 FSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRR   80 (389)
T ss_dssp             CCHHHHSCCCCTTGGGHHHHHHHHHTTCEEEECSSCCCCSCCCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHT
T ss_pred             CCHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             97456348987788899999999976998888989989999889999999850777778899868999999999998886


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~g~~~~~~~I~it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (389)
T d2gb3a1          81 QRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERT  160 (389)
T ss_dssp             SCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTE
T ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf             39876552699625543221222112235798688707987433432113686321232222355420245554215674


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~  240 (389)
T d2gb3a1         161 KGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGC  240 (389)
T ss_dssp             EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEE
T ss_pred             CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             07984798766443210899999984234499999994131002323322222222223443345565334576563132


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~~~~~~l  320 (389)
T d2gb3a1         241 LITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAEL  320 (389)
T ss_dssp             EECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEEC
T ss_pred             EECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEC
T ss_conf             51100268998766420122223222222222322320002232333321002344445430463236999558999958


Q ss_pred             --------------------------------------------------------------------C
Q ss_conf             --------------------------------------------------------------------9
Q 003496          278 --------------------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------------------~  278 (815)
                                                                                          .
T Consensus       321 p~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~~~~~~l~~a~~~L~~~lk~f~~  389 (389)
T d2gb3a1         321 PVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMFCS  389 (389)
T ss_dssp             SSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999986006329789994750146888889989999728999999999999999999619

>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease, catalytic domain {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: alpha-subunit of urease, catalytic domain
domain: alpha-subunit of urease, catalytic domain
species: Helicobacter pylori [TaxId: 210]

Probab=100.00  E-value=0  Score=29357.72  Aligned_cols=1  Identities=0%  Similarity=-0.625  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 GiDtHvHfi~Pqq~~~al~sGiTT~iGgGtGPa~Gt~att~tpg~~~i~~ml~a~d~~P~N~g~~gkGn~s~~~~l~eqi   80 (389)
T d1e9yb2           1 GIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLAKGNASNDASLADQI   80 (389)
T ss_dssp             EEEEEEETTCTTHHHHHHHTTEEEEEEECCSSCHHHHHCCCCCHHHHHHHHHHHHTTSSSEEEEEEECCCSCHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf             95545334488789999856870774586588877776552797608999998600377253662116779837899999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~aGa~GlKiHEDwGatp~~Id~~L~vad~~dvqv~iHtDtlNE~Gfve~T~~a~~gRtiH~~HtEGaGGGHAPDii~~~~  160 (389)
T d1e9yb2          81 EAGAIGFKIHEDWGTTPSAINHALDVADKYDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAG  160 (389)
T ss_dssp             HTTCSEEEECGGGCCCHHHHHHHHHHHHHTTCEEEECCCTTCSSCCHHHHHHHHTTCCEEETTTTSTTSCSTTTGGGGGG
T ss_pred             HHCCCEEECCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHCC
T ss_conf             72303220231026787888899998775095389438976654303648998679752003137777777617888705


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~nvLpsSTnPT~Pyt~nt~~EhldMlmvcHhL~~~ipeDvafAesRiR~eTIaAEdvLhD~GaiSi~sSDsqaMGRvgE  240 (389)
T d1e9yb2         161 EHNILPASTNPTIPFTVNTEAEHMDMLMVCHHKDKSIKEDVQFADSRIRPQTIAAEDTLHDMGAFSITSSDSQAMGRVGE  240 (389)
T ss_dssp             STTEEEEECGGGCSCBTTHHHHHHHHHHHTTTCCSSCHHHHHHHHHHCCHHHHHHHHHHHHTTSCCEECCCTTSSCCTTS
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHCHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHH
T ss_conf             77766788999878666628886345241034798980267777630330223367776336854531366644443677


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 vi~RtwQtA~kmk~~rG~l~~d~~~~DN~RvkRYiAKYTINPAIahGis~~VGSvE~GK~a~G~A~~~tSvtFVSqaAid  320 (389)
T d1e9yb2         241 VITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVHHGKAKYDANITFVSQAAYD  320 (389)
T ss_dssp             HHHHHHHHHHHHHHHHCSCSSCCSSSCHHHHHHHHGGGTHHHHHHTTCTTTSSSSCTTSBGSTTHHHHHCEEEECHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCHHCCCCCCCCCCCCCCCCCCCEEEEECHHHHH
T ss_conf             89999998999998863687667776427777666650568577558211048625366135867665635886688875


Q ss_pred             --------------------------------------------------------------------C
Q ss_conf             --------------------------------------------------------------------9
Q 003496          278 --------------------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------------------~  278 (815)
                                                                                          .
T Consensus       321 ~Gi~~~LGL~K~l~pVkn~R~ItK~DM~~Nda~P~IeVDPETYeV~aDGelltcePA~~LPLAQRYFLF  389 (389)
T d1e9yb2         321 KGIKEELGLERQVLPVKNCRNVTKKDMQFNNTTAHIEVNPETYHVFVDGKEVTSKPANKVSLAQLFSIF  389 (389)
T ss_dssp             TTHHHHTTCCSEEEECCCCSSCCGGGSTTCCCCCCEEECTTTCCEEETTEECCCCCBSCCSSSTTTCCC
T ss_pred             CCCHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCEEECCCCEEEEECCEECCCCCCCCCCCHHCCCCC
T ss_conf             787677387752786138887887785115789982689997689889999135765657630110177

>d2o3ia1 e.73.1.1 (A:2-390) Hypothetical protein CV3147 {Chromobacterium violaceum [TaxId: 536]}

class: Multi-domain proteins (alpha and beta)
fold: CV3147-like
superfamily: CV3147-like
family: CV3147-like
domain: Hypothetical protein CV3147
species: Chromobacterium violaceum [TaxId: 536]

Probab=100.00  E-value=0  Score=29342.06  Aligned_cols=1  Identities=0%  Similarity=-0.792  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~Ls~~Dl~~i~~Ga~iLGtGGGGdp~~~~~l~~~~~~~~~~~~~~V~li~~del~D~~~V~v~~mGAPtv~~E~~~~~   80 (389)
T d2o3ia1           1 AFELSPSDLEPLLQGACFFGSGGGGTMISARHLAANFRKGDYYPTDKVRVVDVDEATDGDCVMVAYMGAPDAINQVQWPN   80 (389)
T ss_dssp             CEEECGGGHHHHHHHHHHTTTTCSCCHHHHHHHHTTCSBTTTBSCSCEEEECGGGCCSSEEEEEEEEECHHHHTTCSSCH
T ss_pred             CCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEECHHHCCCCCEEEEEEEECCHHHHEECCCC
T ss_conf             93757999999851459997278876688999999986642257996699535336888899997640787883405799


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~e~~~a~~~l~~~~g~~~~av~~~EiGG~Ns~~pl~~AA~~glPvVDaD~mGRAfPelqm~t~~i~G~~~~P~~lad~  160 (389)
T d2o3ia1          81 GPVEAALAARQRLESQGRKLAYVVAPESGALGFVVASLVAAKLGLAVVDADGAGRAVPSLPMLTYAAAGVPPTPAFLAGE  160 (389)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHTCEEESBCSSSSCCSSGGGSHHHHTTCCCCSEEEECS
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCHHHEEHEECCCCCCCEEEECC
T ss_conf             75799999999999719975799951668722789999999719988747875456774322000105899887699728


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~Gn~~i~~~~~~~~~~~~~e~~~~~~e~~~R~~~~~~~~Gg~~~~a~~pm~~~~~~~~~~I~gTlS~A~~iGrav~~ar~  240 (389)
T d2o3ia1         161 SGLCVELGVRMPPPDGQRREDISTVVEQMLRPILTNPQFGQFGGLAMWMMSPAQLGGALPVRGTLSRALKLGRALQDGKV  240 (389)
T ss_dssp             SSCEEEEEEECCCCC---CCCHHHHHHHHHHHHTTSTTTCSEEEEEEEEECHHHHHHHCCSBSHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99779984023555412577899999998877766875174347862659989983201168559999999899998664


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~l~~~~~~~g~~~l~~Gki~~v~r~~~~Gf~~G~v~ieg~~~~~~i~fqNE~L~a~~~g~~~~la~vPDLI~  320 (389)
T d2o3ia1         241 KTAEAMLDFLRRELDIKGKLLFGPATLASPEVSTAGGFDLGKVVLEDGERRCTVLYQNESLLAWDSALSHPLATAPDAIS  320 (389)
T ss_dssp             CSHHHHHHHHHHHHCCCCEEEEEEEEECCC----------CEEEEESSSCEEEEEESSSEEEEEETTCSSCSEETTSEEE
T ss_pred             CCCCHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCEEEEEEEECCCEEEEEEEEECEEEEEECCCCCEEEECCCEEE
T ss_conf             24327999998732667868999689997799705871789999907985899999814189998798978997796799


Q ss_pred             --------------------------------------------------------------------C
Q ss_conf             --------------------------------------------------------------------9
Q 003496          278 --------------------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------------------~  278 (815)
                                                                                          .
T Consensus       321 ~lD~~tG~pitte~~~~~~~~g~~~~ryG~~V~Vi~~pa~~~wrt~~~l~~~GP~~~~fGy~~~y~P~e  389 (389)
T d2o3ia1         321 YFVEGEGQHVFSNGDLSGNDHGLDPSVRGRKAAVIALPAAAPLSEGLILQSFADELAQLGYLGPYAPVD  389 (389)
T ss_dssp             EEECSSSCCCCCHHHHBCSSSSBCTTTTTSEEEEEEECCCGGGSSHHHHHHHHHHHHHTTCCSCCCCCC
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHCCHHHHHHCCCHHHHCCCCCCCCCCC
T ss_conf             986688864423332345556654234798899999609827486333655095055359997765288

>d1f8ea_ b.68.1.1 (A:) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Sialidases
family: Sialidases (neuraminidases)
domain: Influenza neuraminidase
species: Influenza A virus, different strains [TaxId: 11320]

Probab=100.00  E-value=0  Score=29279.10  Aligned_cols=1  Identities=0%  Similarity=-0.128  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~n~~kplC~i~G~a~~sKDN~IRig~~g~i~V~REPyVSC~p~eC~~FaL~QGa~l~~kHSNgTi~DRsp~RtL~s~   80 (388)
T d1f8ea_           1 RDFNNLTKGLCTINSWHIYGKDNAVRIGEDSDVLVTREPYVSCDPDECRFYALSQGTTIRGKHSNGTIHDRSQYRALISW   80 (388)
T ss_dssp             CCCCCCCCEECCCSEEEEEEECCHHHHHTTSCBEEEEEEEEEEETTEEEEEEEEEEEESSSGGGTTTTCSCCTTCEEEEE
T ss_pred             CCHHHCCCCCCCCCCEEEEECCCCEEECCCCCEEEEECCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHEEEEC
T ss_conf             94011376666433146661477168638987899826512028202034762043101786668841566510113441


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~lG~~p~~~ns~f~~vaWSsssCHDGk~Wl~i~vtG~D~nA~A~~~Y~g~~tdti~SW~~nILRTQESeCvCinG~C~vv  160 (388)
T d1f8ea_          81 PLSSPPTVYNSRVECIGWSSTSCHDGKTRMSICISGPNNNASAVIWYNRRPVTEINTWARNILRTQESECVCHNGVCPVV  160 (388)
T ss_dssp             ETTSCCBTTTCEEEEESSEEEEEECSSSEEEEEEESCTTSCEEEEEETTEEEEEEECSSSSCCBCCSSCCCCBTTEEEEE
T ss_pred             CCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCEEEEHHHHHHHHHCCCCCCCEEEECCEEEEE
T ss_conf             26899966774589998643444689724899878798883799998999963265444311100322048989988999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 mTDG~A~~~A~~ri~~i~eGkIik~~~l~g~~~HiEECSCYp~~~~V~CvCRDNW~GsNRP~v~in~~~~~~~~~YvCsg  240 (388)
T d1f8ea_         161 FTDGSATGPAETRIYYFKEGKILKWEPLAGTAKHIEECSCYGERAEITCTCRDNWQGSNRPVIRIDPVAMTHTSQYICSP  240 (388)
T ss_dssp             EEEECSSSCEEEEEEEEETTEEEEEEECCSSCCCCEEEEEEEETTEEEEEEECCSSCSSCEEEEEETTTTEEEEEECCCS
T ss_pred             EECCCCCCCCCEEEEEEECCEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEECC
T ss_conf             92688778631589998566388876169886731763422899946999706888888975995455431443278646


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~DTPR~~D~s~g~C~~p~~~~g~~GVKGf~f~~G~~vW~GRTiS~~sRsGfE~~~v~~gwt~~~s~~~~~q~iv~n~n  320 (388)
T d1f8ea_         241 VLTDNPRPNDPTVGKCNDPYPGNNNNGVKGFSYLDGVNTWLGRTISIASRSGYEMLKVPNALTDDKSKPTQGQTIVLNTD  320 (388)
T ss_dssp             SCCSSSCCCCCSSCCSSSCCCSCCSCCCCCCEECCTTSCEEEECSCSSSSEEEEEEECTTTTTCTTCCCSEEEEEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCCCCCCHHHHCCEEEEECCC
T ss_conf             44789998988866478987778888734314766897687664247667761699934875276603204228996587


Q ss_pred             -------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------~  278 (815)
                                                                                         .
T Consensus       321 wSGYSGsF~~~~~~~~C~~pCFyVElIRGrp~E~~v~WTSnSiv~fCG~~~~~g~~swpDGA~i~ff~  388 (388)
T d1f8ea_         321 WSGYSGSFMDYWAEGECYRACFYVELIRGRPKEDKVWWTSNSIVSMCSSTEFLGQWDWPDGAKIEYFL  388 (388)
T ss_dssp             ECCCEEEECCTTCSSSEECCEEEEEEEEETTTCTTSSCEEEEEEEEEEESSCCCCCCCCCCCCGGGGC
T ss_pred             CCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             77561771234348873011489999618876563467407779993679986786689865465559

>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Vacuolar ATP synthase subunit C
superfamily: Vacuolar ATP synthase subunit C
family: Vacuolar ATP synthase subunit C
domain: Vacuolar ATP synthase subunit C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=29276.27  Aligned_cols=1  Identities=0%  Similarity=0.104  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~y~lvSlP~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~f~IP~lKvGTLDsLv~lsDeL~KlD~~ve~vv~Kv~~   80 (388)
T d1u7la_           1 LYTANDFILISLPQNAQPVTAPGSKTDSWFNETLIGGRAFVSDFKIPEFKIGSLDTLIVESEELSKVDNQIGASIGKIIE   80 (388)
T ss_dssp             CCCCCEEEEEEEETTCCCTTSTTCCHHHHHHHTGGGGTSEEEECCCCCCBCSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             97565069998778788889850468999985225887236304798777135999998788888788899999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~l~~~~~~~~~~l~v~~~~~~~yl~~F~Wd~aKyp~~~~l~elv~~i~~~~~~id~dlk~k~~~Yn~~K~~l~~~~R  160 (388)
T d1u7la_          81 ILQGLNETSTNAYRTLPINNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAER  160 (388)
T ss_dssp             HHHHTTSSCSSSCCSCCBTTBCHHHHHHTCCCCTTTSCTTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHEEEECCCCHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99987236110321676878138987564460444288889899999999999998889999999999999999998740


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 K~~G~L~~r~L~diV~~ed~V~dSEyLtTllVvVPk~~~~dwl~~YEtL~~~VVPrSs~~i~~D~e~~L~~VtlFkk~~~  240 (388)
T d1u7la_         161 KKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIAEDAEYVLFNVHLFKKNVQ  240 (388)
T ss_dssp             HTCSCTTTSCCTTTCCGGGSCCSCSSEEEEEEEEEGGGHHHHHHHGGGSSTTBCTTCCEEEEECSSEEEEEEEEEGGGHH
T ss_pred             CCCCCEEECCHHHHCCHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCCCHHHHCEECCCEEEEEEEEEHHHHH
T ss_conf             04785262427752798872553314058999961531788999986325762687155302568805899999723199


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 eF~~~aRE~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~~wiHiKalRvFVESVLRYGLP~~  320 (388)
T d1u7la_         241 EFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVFINWFHIKALRVYVESVLRYGLPPH  320 (388)
T ss_dssp             HHHHHHHHTTCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred             HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999997594304266797899999999999999999999999999999999999999998568766433453589834


Q ss_pred             -------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------~  278 (815)
                                                                                         -
T Consensus       321 F~~~li~p~~k~~kklr~~L~~~f~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ey~PyV~~~i~l  388 (388)
T d1u7la_         321 FNIKIIAVPPKNLSKCKSELIDAFGFLGGNAFMKDKKGKINKQDTSLHQYASLVDTEYEPFVMYIINL  388 (388)
T ss_dssp             EEEEEEEECTTCHHHHHHHHHHHHGGGGCTTCC------------------------CCSSEEEEEEC
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf             13899950872589999999998634265300234446667776543212335677515549998349

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=29275.49  Aligned_cols=1  Identities=0%  Similarity=-1.622  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 gll~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~   80 (388)
T d1w3ba_           1 GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER   80 (388)
T ss_dssp             CCCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             96999999998699999999999999868998999999999999869999999999999985999899999999996420


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
T d1w3ba_          81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             00222222222121122222222222222222222222222221112222222222222222222110001356788887


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  240 (388)
T d1w3ba_         161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH  240 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             40258610689986363010247199999999999984946499999971552200529999999998577755479999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  320 (388)
T d1w3ba_         241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN  320 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             99999999878999999999999984999899999999999974879999999986540487300101579999998789


Q ss_pred             -------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------~  278 (815)
                                                                                         .
T Consensus       321 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf             99999999999986889899999999999985999999999999997099989999999999998589

>d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Chorismate synthase, AroC
superfamily: Chorismate synthase, AroC
family: Chorismate synthase, AroC
domain: Chorismate synthase, AroC
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=100.00  E-value=0  Score=29274.49  Aligned_cols=1  Identities=0%  Similarity=-0.661  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 lR~tT~GESHG~aig~vIdG~PaGl~i~~~~I~~~L~RR~pG~~~~~t~R~E~D~v~ilSGv~~G~TtG~PI~~~I~N~D   80 (388)
T d1qxoa_           1 MRYLTAGESHGPRLTAIIEGIPAGLPLTAEDINEDLRRRQGGYGRGGRMKIENDQVVFTSGVRHGKTTGAPITMDVINKD   80 (388)
T ss_dssp             CEEEEECCTTSSEEEEEEECCCBTCBCCHHHHHHHHHHHHCSTTCCTHHHHCCCCCEEEESEETTEECSSCEEEEEECGG
T ss_pred             CCEEECCCCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCEEEEEECCC
T ss_conf             95541313688834899816186887499999999955798999997668999827994644389806774499998787


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~PRPGHAD~~~~~Kyg~~d~r~gggRsSaReTa~rVAaGaiAk~~L~~~gI~v~s~  160 (388)
T d1qxoa_          81 HQKWLDIMSAEDIEDRLKSKRKITHPRPGHADLVGGIKYRFDDLRNSLERSSARETTMRVAVGAVAKRLLAELDMEIANH  160 (388)
T ss_dssp             GGGGTTTTCSSCCCGGGTTTTCCCSCCTTSSHHHHHHHHTCSSTHHHHHHHSGGGHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf             77754444411123455432012457888435789987478656687751688999999999999999999819735235


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 v~~IG~i~~~~~~~~~~~~~~~~~~~~~~~c~d~~~~~~m~~~I~~ar~~gDSlGG~ve~~~~gvP~GLG~pv~~d~kLd  240 (388)
T d1qxoa_         161 VVVFGGKEIDVPENLTVAEIKQRAAQSEVSIVNQEREQEIKDYIDQIKRDGDTIGGVVETVVGGVPVGLGSYVQWDRKLD  240 (388)
T ss_dssp             EEEETTEECCCCSSCCHHHHHHHHHTSTTCCSCGGGHHHHHHHHHHHHHTTCCBCEEEEEEEESCCTTCSCSSSGGGCHH
T ss_pred             EEEECCEECCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf             68741320267443687888764311556467868855668889999853887676399999717833368866776541


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 a~La~AlmSIpAvKgvEfG~GF~~a~~~GSe~nD~~~~~~~~~~~~~tN~~GGi~GGISnG~pI~~rva~KPtsSI~~~q  320 (388)
T d1qxoa_         241 ARLAQAVVSINAFKGVEFGLGFEAGYRKGSQVMDEILWSKEDGYTRRTNNLGGFEGGMTNGQPIVVRGVMKPIPTLYKPL  320 (388)
T ss_dssp             HHHHHHHHTSTTEEEEEETTGGGGGGSBGGGTSCCEEEETTTEEEESCCTTTTEETTEECSSCEEEEEEECCCSCCSSCE
T ss_pred             HHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
T ss_conf             89998774243113453056488897421455650100466784113688762016777788769999957865567755


Q ss_pred             -------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------~  278 (815)
                                                                                         .
T Consensus       321 ~Tvd~~~~e~~~~~~gRhDpCivpRAvpV~EAm~alvLad~~L~k~g~d~l~~~~~~~~~y~~~~~~~  388 (388)
T d1qxoa_         321 MSVDIETHEPYKATVERSDPTALPAAGMVMEAVVATVLAQEILEKFSSDNLEELKEAVAKHRDYTKNY  388 (388)
T ss_dssp             EEECTTTCCEEEECCSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHSCCSBHHHHHHHHHHHHHHHHTC
T ss_pred             CCEECCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             53566898067246898897075532899999999999999999857775999999999999998519

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=100.00  E-value=0  Score=29272.20  Aligned_cols=1  Identities=0%  Similarity=-0.892  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~l~~PGP~~~~~~V~~Am~~~~~~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a   80 (388)
T d2ch1a1           1 KFTPPPASLRNPLIIPEKIMMGPGPSNCSKRVLTAMTNTVLSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAG   80 (388)
T ss_dssp             CCCCCCGGGSSCCCCCCCBCCSSSSCCCCHHHHHHTTSCCCCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHH
T ss_pred             CCCCCCHHHCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHH
T ss_conf             98999634437668885540108998889999997476778878899999999999999999689997199976848999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~ea~~~~l~~~~~~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~  160 (388)
T d2ch1a1          81 MEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQP  160 (388)
T ss_dssp             HHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCC
T ss_conf             99999974211133333222310000033443311332123565445521012344430478633565302222322211


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (388)
T d2ch1a1         161 LEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLL  240 (388)
T ss_dssp             CTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHH
T ss_pred             HHHHCCHHCCCCCEEEEEEEECCCCCCCCHHCCCCEEEEECCCCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCH
T ss_conf             12200000146540366532102346621230576399982655457887289972427788754202575531025603


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~  320 (388)
T d2ch1a1         241 LLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIM  320 (388)
T ss_dssp             HHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEE
T ss_pred             HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEEE
T ss_conf             55543023320025576532778999999999998766677898887777877766553022323689788098489998


Q ss_pred             -------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------~  278 (815)
                                                                                         -
T Consensus       321 ~p~g~~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~~~~~~~  388 (388)
T d2ch1a1         321 IPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHPDYIF  388 (388)
T ss_dssp             CCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred             CCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999999998513998996788655698899717717899999999999999999961986589

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=100.00  E-value=0  Score=29272.17  Aligned_cols=1  Identities=0%  Similarity=-0.924  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~k~~~~~LtfDDVlLvP~~st~~~~~vdl~~~~t~~~~l~iPIisA~MDtVt~~~mAi~ma~~GGlgVihr~~~ie~q~~   80 (388)
T d1eepa_           1 NKITKEALTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQRK   80 (388)
T ss_dssp             CCSCCCCCCGGGEEECCCCCCSCGGGCCCCEESSSSCEESSSEEECCCTTTCSHHHHHHHHHHTSEEEECSSSCHHHHHH
T ss_pred             CCCCCCCCCCCCEEEECCCCCCCHHHCEEEEEEECCEECCCCEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHH
T ss_conf             96333578841079827988777778354489538776699877169888788999999998798899908999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~v~~Vk~~~~~~~~~~~~d~~~~~~~~~t~~~~~~~~~a~~d~~~~~~~p~~~~d~~~~l~vgaAvg~~~~~~~ra~~L~  160 (388)
T d1eepa_          81 EIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELV  160 (388)
T ss_dssp             HHHHHHTCC--------------------------------------CCTTCCBCTTSCBCCEEEECSCTTHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHH
T ss_conf             99986230044520036763310223300554422547877188876506777655224101220589789999999877


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~aG~D~ivID~AhG~s~~~~~~i~~ik~~~~~v~vIaGNV~T~e~a~~L~~~GaD~VkVGiGpGs~CtTr~~~GvG~pq~  240 (388)
T d1eepa_         161 KAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQI  240 (388)
T ss_dssp             HTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHH
T ss_pred             HHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHH
T ss_conf             51254543103663167799999999987899866500126799999998629775543122232345654236674238


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 sai~~~~~~~~~~~vpiIADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~Espg~~~~~~g~~~k~~~gm~S~~a~~~g~  320 (388)
T d1eepa_         241 TAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGS  320 (388)
T ss_dssp             HHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTSSSCEEEETTEEEEC--------------
T ss_pred             HHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEEECCCEEECCHHHHCCCCCCCEEEEECCCEEECCCCCCCHHHHHCCC
T ss_conf             89999999861577157853666737730136785155034053654136788418985892740155665487775445


Q ss_pred             -------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------~  278 (815)
                                                                                         .
T Consensus       321 ~~~~~~~~~~~~~~~~~EG~~~~v~~~G~~~~~~~~l~gglrs~m~y~Ga~~l~e~~~~~~fv~vt~~  388 (388)
T d1eepa_         321 KSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKINSKFVKISHS  388 (388)
T ss_dssp             ----------------------CEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHSCCEEECCCC
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCEEEEECCC
T ss_conf             21013334664422346704987078887899999999999997421586629998539889997899

>d2dcfa1 e.3.1.1 (A:5-392) 6-aminohexanoate-dimer hydrolase NylC {Flavobacterium sp. [TaxId: 239]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: 6-aminohexanoate-dimer hydrolase NylC
species: Flavobacterium sp. [TaxId: 239]

Probab=100.00  E-value=0  Score=29270.81  Aligned_cols=1  Identities=100%  Similarity=1.167  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~t~~nw~~~~~~r~~f~~~~~~~pt~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~t~a   80 (388)
T d2dcfa1           1 STGQHPARYPGAAAGEPTLDSWQEPPHNRWAFAHLGEMVPSAAVSRRPVNAPGHALARLGAIAAQLPDLEQRLEQTYTDA   80 (388)
T ss_dssp             CCCCCCCSSTTCCTTCSCTTTTTSTTHHHHHTTCGGGTSCCCCCCSCC----CCCEEECTTHHHHCTTHHHHHHHTTEEE
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCE
T ss_conf             99888455889523677847864886301205558774884342079888775333212444455433999987428847


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~lV~~~G~iv~E~y~~~~~~~t~~~~~SvtKs~ta~li~~lve~G~l~ldd~v~~ylPe~~~~~~~~iTi~~LL~mtsGl  160 (388)
T d2dcfa1          81 FLVLRGTEVVAEYYRAGFAPDDRHLLMAVSKSLCGTVVGALVDEGRIDPAQPVTEYVPELAGSVYDGPSVLQVLDMQISI  160 (388)
T ss_dssp             EEEEETTEEEEEEECTTCCTTCCEECTTHHHHHHHHHHHHHHHTTSCCTTSBGGGTCGGGTTSTTSSCBHHHHHTTCBCC
T ss_pred             EEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHCCCCC
T ss_conf             99998998999974699884320148999889999999999734854456752302454404543215677764233677


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pg~~f~Y~~~~~~lLg~iie~~tG~~~~~~~~e~i~  240 (388)
T d2dcfa1         161 DYNEDYVDPASEVQTHDRSAGWRTRRHGDPADTYEFLTTLRGDGSTGEFQYCSANTDVLAWIVERVTGLRYVEALSTYLW  240 (388)
T ss_dssp             SCCCCSSCTTSHHHHHHHHHTSSCCCTTCCSSHHHHHHTCCCCSCBSSCCCCHHHHHHHHHHHHHHHCSCHHHHHHHHTG
T ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHCC
T ss_conf             64234355651355666653101001246188999874067679998789806789999999987517630222333204


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~PlGm~~~~~~~~~~~g~~~~~ggl~~tarDlarfg~l~l~~G~~~g~qils~~~i~~~~~~~~~~~~~~~~~~~~~~~~  320 (388)
T d2dcfa1         241 AKLDADRDATITVDTTGFGFANGGVSCTARDLARVGRMMLDGGVAPGGRVVSEDWVRRVLAGGSHEAMTDKGFTNTFPDG  320 (388)
T ss_dssp             GGTTCSSCCEECBCTTCCBCTTTCEEECHHHHHHHHHHHHTTTEETTEECSCHHHHHHHHHCCCTTTCCCHHHHHHCTTC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             84212222222334567632100323132214577788874885488605649999998568972001245656678999


Q ss_pred             -------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------~  278 (815)
                                                                                         -
T Consensus       321 ~Yg~~ww~~~~~~~~~~~~G~~GQ~i~vdP~~~lvIV~ls~~~~~~~~~~~~~~~~i~~~i~~~l~av  388 (388)
T d2dcfa1         321 SYTRQWWCTGNERGNVSGIGIHGQNLWLDPLTDSVIVKLSSWPDPDTEHWHRLQNGILLDVSRALDAV  388 (388)
T ss_dssp             EEETTEEECCCTTCCEEEEETTTEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHHHHHTSCC
T ss_pred             CCCCCEEECCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             97864551699997089887789689999069989999599999985468999999999999997229

>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of family B DNA polymerases
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=29270.13  Aligned_cols=1  Identities=0%  Similarity=-0.427  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~g~~ltr~~~d~~~g~~i~~~~~t~~G~~~v~v~~q~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~V~~v   80 (388)
T d1q8ia1           1 AQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGL   80 (388)
T ss_dssp             CEEEEEEEEEEECCTTCBEEEEEEEETTEEEEEECSCBCEEEEEEGGGHHHHHHHTTTCCSEEEEEEEEECTTSCEEEEE
T ss_pred             CCCCEEEEEEEEEECCCEEEEEEEECCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHCCCCEECCEEEECCCCCEEEEE
T ss_conf             98623630024771897799999985998879998799679999854567999998547781664322055789779999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 y~~~~~~~r~l~~~l~~~g~~vyEaDI~~~~RfliD~~i~~~~w~~~~~~~~~~~~~~~~~~~~~~P~lkilsfDIE~~~  160 (388)
T d1q8ia1          81 YCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETTR  160 (388)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCCBSTTCCHHHHHHHHTTCSSEEEEEEEEETTEEEEEEEEECTTCCCCCCEEEEEEEECT
T ss_pred             EECCHHHHHHHHHHHHHCCCEEEECCCCHHHEEEEECCCCCCEEEEEECCCCEEECCEEEECCCCCCCCEEEEEEEEECC
T ss_conf             92899999999998862698589768996884899787888858998624661541067566788997359999999747


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~si~l~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~E~~LL~~F~~~i~~~dPDii~GyNi~~FDlpyL~~Ra~~~~  240 (388)
T d1q8ia1         161 HGELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYR  240 (388)
T ss_dssp             TSCEEEEEEEETTEEEEEEESSCCSCCTTCSSEEEEESSHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTT
T ss_pred             CCCEEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHC
T ss_conf             88667898548998889999567777787855999969999999999999987199889960788878899999999858


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 i~~~lgr~~~~~~~~~~~~~~~~~~~~i~Gr~~lD~~~~~k~~~~~~~sy~L~~Va~~~Lg~~K~~~~~~~~~~~~~~~~  320 (388)
T d1q8ia1         241 LPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRF  320 (388)
T ss_dssp             CCCCCSSSSCCCEEEEECSSSCEEEEEBTTBEEEEHHHHHHHSCCCCSCCCHHHHHHTTC------------CTHHHHHH
T ss_pred             CCCHHHHCCCCCEEEECCCCCCCEEEECCEEEEEEHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCC
T ss_conf             87404424772205875655651133020499860268897563043546776755410024455557255589987157


Q ss_pred             -------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------~  278 (815)
                                                                                         +
T Consensus       321 ~~d~~~l~~Y~~~D~~Lv~~L~~k~~~i~~~~ela~l~g~pl~~~g~s~~~~~~lll~~~~r~g~v~P  388 (388)
T d1q8ia1         321 AEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAP  388 (388)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCSCTTTTCCHHHHHHHHHHHHHHHTTBCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCCEECC
T ss_conf             12489999998999999999999877899999999884979899788499999999999997799587

>d2py5a2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]}

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: DNA polymerase I
domain: phi29 DNA polymerase
species: Bacteriophage phi-29 [TaxId: 10756]

Probab=100.00  E-value=0  Score=29270.26  Aligned_cols=1  Identities=0%  Similarity=-0.860  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~t~~s~~~~~fk~~~~~~~~~~~~p~~~~~~~~~ir~~y~GG~~~~~~~~~~~~~~~i~~yD~nSLYPs~M~~~~~p~g~   80 (388)
T d2py5a2           1 MTAGSDSLKGFKDIITTKKFKKVFPTLSLGLDKEVRYAYRGGFTWLNDRFKEKEIGEGMVFDVNSLYPAQMYSRLLPYGE   80 (388)
T ss_dssp             SSHHHHHHHHHHHHHCHHHHHHHSCCCCHHHHHHHHTTCCCCCEEECGGGBTCEECSEEEEEETTHHHHHHHHSCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCC
T ss_conf             96307899999999765146540888991477888971217623214544555668548986557239998337899776


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
T d2py5a2          81 PIVFEGKYVWDEDYPLHIQHIRCEFELKEGYIPTIQIKRSRFYKGNEYLKSSGGEIADLWLSNVDLELMKEHYDLYNVEY  160 (388)
T ss_dssp             EEEEESSCCCCTTSCEEEEEEEEEEEECTTCCCCCCC-------CCSCCSBCTTSCEEEEEEHHHHHHHHHHEEEEEEEE
T ss_pred             CEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECHHHHHHHHHCCCCEEEEE
T ss_conf             04653614666666770489999822765557766530344677865784668850567873899999995587258888


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~f~~~~~~~k~~~~~~~~~kk~~~~~~q~~~KLl~NSlYGk~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (388)
T d2py5a2         161 ISGLKFKATTGLFKDFIDKWTYIKTTSEGAIKQLAKLMLNSLYGKFASNPDVTGKVPYLKENGALGFRLGEEETKDPVYT  240 (388)
T ss_dssp             EEEEEEEEESCTTHHHHHHHHHHHHHCCHHHHHHHHHHHHSSHHHHTCCSBCCBEEEEECTTSSEEEEECCCCBCCCCCH
T ss_pred             EEEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHEECCCCCCCCCEEECCCCCEEHHHHHCCCCCCCCCH
T ss_conf             76677212357899999842588774017799999974542441013335655434641443200121210001464431


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~ia~~ita~~r~~~~~~~~~~~~~v~Y~DTDSi~~~~~~~~~~~~~~~~~~~lg~~~~E~~~~~~~~~~~K~Y~~~~~~~  320 (388)
T d2py5a2         241 PMGVFITAWARYTTITAAQACYDRIIYCDTDSIHLTGTEIPDVIKDIVDPKKLGYWAHESTFKRAKYLRQKTYIQDIYMK  320 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTTEEEEETTEEEEESSSCCGGGGGGBCSSSTTSEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEECCCCCHHHHHHHHCHHHHCCCCCCCCCCHHHCCCCCHHHCEEECC
T ss_conf             48899998888889987641488379983636886577621567764245650546301010112116643201457424


Q ss_pred             -------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------~  278 (815)
                                                                                         .
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~v~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~d~~~~~~  388 (388)
T d2py5a2         321 EVDGKLVEGSPDDYTDIKFSVKCAGMTDKIKKEVTFENFKVGFSRKMKPKPVQVPGGVVLVDDTFTIK  388 (388)
T ss_dssp             EETTEEEECBTTBCSEEEEEEEETTCCHHHHTTCCTTTCSTTCEEEEEEEEEEETTEEEEEEEEEECC
T ss_pred             CCCCCCCCCCCEEECCHHHHHHHCCCHHHHHHHHHHHHCHHHHEEECCEEEEECCCCCEECCCEEECC
T ss_conf             54332233442340152456455231699999987750502411656351177069826524402239

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=29271.45  Aligned_cols=1  Identities=0%  Similarity=-0.991  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~l~~pGP~~~~~~Vl~am~~~~i~HRs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT   80 (388)
T d1h0ca_           1 HKLLVTPPKALLKPLSIPNQLLLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGH   80 (388)
T ss_dssp             CCCSSCCCGGGGSCCCCCCCEECSSSCCCCCHHHHHHHTCCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHH
T ss_pred             CCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHH
T ss_conf             98767997676555688767212499988999999975768888789899999999999999996899983899869489


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~a~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i  160 (388)
T d1h0ca_          81 CALEAALVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVL  160 (388)
T ss_dssp             HHHHHHHHHHCCSSCCEEECBSSHHHHHHHHHHHHHC--CBCCBCCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEE
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEECCCCC
T ss_conf             99999999861268740231134301000012211111133333587655216899987616971137874200014445


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (388)
T d1h0ca_         161 QPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLD  240 (388)
T ss_dssp             CCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTC
T ss_pred             CCHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC
T ss_conf             67999988764025441001112344332112345651220333321468972677750078887544304666432212


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~  320 (388)
T d1h0ca_         241 IKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTT  320 (388)
T ss_dssp             HHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEE
T ss_pred             CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHCCCEEEE
T ss_conf             00023443210233443556657999988878999997166531000121047778777633753126887773880899


Q ss_pred             -------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------~  278 (815)
                                                                                         .
T Consensus       321 ~~~p~~~~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k~~  388 (388)
T d1h0ca_         321 VAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHCPKKK  388 (388)
T ss_dssp             EECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCCC-
T ss_pred             EECCCCCCHHHHHHHHHHCCCEEEECCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             98899989999999998519989957852204998998477777999999999999999999862569

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=0  Score=29267.45  Aligned_cols=1  Identities=100%  Similarity=1.300  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~s~~~~~~~~s~ir~~~~~~~~~~dvi~l~~g~p~~~~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~   80 (388)
T d1gdea_           1 ALSDRLELVSASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNG   80 (388)
T ss_dssp             CHHHHHHHSCCCHHHHHHHHHHHCTTCEECCCCSCCSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             95156410894689999999858998199999889998789999999999855764789985779999999999875133


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~  160 (388)
T d1gdea_          81 IEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKT  160 (388)
T ss_dssp             CCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTE
T ss_pred             CCCCCHHEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHCCCCC
T ss_conf             56787020431367535889999986589798998899848899999985998999514556687879999997375687


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR  240 (388)
T d1gdea_         161 RALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWR  240 (388)
T ss_dssp             EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGC
T ss_pred             EEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCCHHHCCCCCCEEEEEECCHHHCCCCCCC
T ss_conf             59998999698888689999999999999869999997088655333677777656057788089995772433376361


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg~fl  320 (388)
T d1gdea_         241 LGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYI  320 (388)
T ss_dssp             CEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTTEE
T ss_pred             EEEEEEECCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf             78997302102343211232223333220045789986032036899999999875334566653212566589833799


Q ss_pred             -------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------~  278 (815)
                                                                                         -
T Consensus       321 ~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~~~e~l~~al~rL~~~l~e~k~~  388 (388)
T d1gdea_         321 FPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKERKLV  388 (388)
T ss_dssp             CCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEECCCCCCCHHHHHHHHHHHCCEEEEECHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99888879999999999998599999810451989999799996499999999999999999961799

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=29266.42  Aligned_cols=1  Identities=0%  Similarity=0.603  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~p~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg   80 (388)
T d1erja_           1 HYLVPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATG   80 (388)
T ss_dssp             CCCCCTTSSSCTTCCCCHHHHCCCSSSSCTTSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEE
T ss_pred             CCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEE
T ss_conf             95687113244147999705765843475322468897089868877762054107607999968999999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~  160 (388)
T d1erja_          81 CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ  160 (388)
T ss_dssp             CBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             ECCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             49948999813640576631665443244321110146778988999988999801213444111121111111111111


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~  240 (388)
T d1erja_         161 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV  240 (388)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCC
T ss_conf             11111111011111111112221015654101111110000124544211236887875899738981999634557300


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  320 (388)
T d1erja_         241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND  320 (388)
T ss_dssp             EEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG
T ss_pred             EEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCC
T ss_conf             01024433345778987899997999999999789928987515776432101344420011012455327899988999


Q ss_pred             -------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------~  278 (815)
                                                                                         -
T Consensus       321 ~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k~  388 (388)
T d1erja_         321 EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  388 (388)
T ss_dssp             CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEEC
T ss_conf             99999969897999999999699999688997899998467425899999999918997999762149

>d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Bacterial lipase
domain: Lipase L1
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=0  Score=29266.15  Aligned_cols=1  Identities=0%  Similarity=-0.427  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~yPIVLvHGl~Gf~~~~l~~~~YW~G~~~~I~~~L~~~G~~V~~~~V~p~~S~~~RA~eL~~~I~~~~~d~G~~   80 (388)
T d1ku0a_           1 ASPRANDAPIVLLHGFTGWGREEMLGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLSSNWDRACEAYAQLVGGTVDYGAA   80 (388)
T ss_dssp             CCCCCCCCCEEEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEECCCCSSBCHHHHHHHHHHHHHCEEEECCHH
T ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98877999889818866677544676214678536468999858978998516986678999999999986345453376


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 hs~~~~~~~~~r~y~g~~~~~~~~~kVnLIgHS~GGld~Ryl~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~SvTT  160 (388)
T d1ku0a_          81 HAAKHGHARFGRTYPGLLPELKRGGRVHIIAHSQGGQTARMLVSLLENGSQEEREYAKEHNVSLSPLFEGGHRFVLSVTT  160 (388)
T ss_dssp             HHHHHTSCSEEEEECCSCGGGGGTCCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCCCCEEEEEE
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             77652302237567220003366786358604554587999999702356432222212344333223567750688885


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 IsTPH~GS~~AD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~~es~~~~~~~~~~s~~~~~~~~a  240 (388)
T d1ku0a_         161 IATPHDGTTLVNMVDFTDRFFDLQKAVLEAAAVASNAPYTSEIYDFKLDQWGLRREPGESFDHYFERLKRSPVWTSTDTA  240 (388)
T ss_dssp             ESCCTTCCGGGGSTTHHHHHHHHHHHHHHHHHHHTTSCGGGCCCCCCBGGGTBCCCTTCCHHHHHHHHHTSHHHHSSSBH
T ss_pred             CCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHH
T ss_conf             05788986366542346652147889998876403542110002466653343457651099999988538876666401


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~dLtt~g~~~fN~~~~~~p~v~Y~S~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~NDGlV  320 (388)
T d1ku0a_         241 RYDLSVPGAETLNRWVKASPNTYYLSFSTERTYRGALTGNYYPELGMNAFSAIVCAPFLGSYRNAALGIDSHWLGNDGIV  320 (388)
T ss_dssp             HHHHSHHHHHHHHHHCCCCTTSEEEEEEECCEEECTTTCCEEECTTSCHHHHHHTHHHHTTCCBGGGTBCGGGCCBSSSS
T ss_pred             HHHCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             03106599999733357899846777785143345777632224444454334557545553346532137679988865


Q ss_pred             -------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------~  278 (815)
                                                                                         +
T Consensus       321 ~v~S~~~g~~~~~~~~~~~~~~i~~G~W~~~~~~~~DHld~iG~~~~~~~~~~~~Y~~~a~~L~~l~~  388 (388)
T d1ku0a_         321 NTISMNGPKRGSNDRIVPYDGTLKKGVWNDMGTYNVDHLEVIGVDPNPSFNIRAFYLRLAEQLASLRP  388 (388)
T ss_dssp             BGGGSSSCCTTCCCCEEECCSSCCBTSEEEEEEESCCTTGGGTSSCCTTSCHHHHHHHHHHHHHTCCC
T ss_pred             CHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             88557587056777543345654455011036547649997388987877999999999999843999

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=100.00  E-value=0  Score=29266.05  Aligned_cols=1  Identities=0%  Similarity=0.303  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 m~~~~~~~~~~~s~~~~i~~~a~~~~~~g~~vi~l~~G~p~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~   80 (388)
T d1j32a_           1 MKLAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKL   80 (388)
T ss_dssp             CCCCHHHHTSCCCSSTTTHHHHHHHHTTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHH
T ss_pred             CCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             94523745399589999999999998779986899997899999899999999998558877899988999999999998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~  160 (388)
T d1j32a_          81 QRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAI  160 (388)
T ss_dssp             HHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHC
T ss_pred             HHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHC
T ss_conf             87316577885599868789999999999819989899928981879999998568599983153336678999999727


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~  240 (388)
T d1j32a_         161 TPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYA  240 (388)
T ss_dssp             CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTT
T ss_pred             CCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHCCCCCCCEEEECCCHHHHH
T ss_conf             77874999889999877403535554432011237867972056531034677887888948522156057037705413


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~g  320 (388)
T d1j32a_         241 MTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDG  320 (388)
T ss_dssp             CTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCB
T ss_pred             CCHHHEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCC
T ss_conf             60657599998899999998766521245668999887632445099999999999999999999998479978668993


Q ss_pred             -------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------~  278 (815)
                                                                                         -
T Consensus       321 g~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~~~~e~l~~al~rl~~~l~~l~  388 (388)
T d1j32a_         321 AFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLHGIL  388 (388)
T ss_dssp             TTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHC
T ss_conf             68999988887999999999999869999981643599996999983899999999999999999859

>d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: NagZ-like
domain: Beta-D-glucan exohydrolase, N-terminal domain
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=100.00  E-value=0  Score=29269.12  Aligned_cols=1  Identities=0%  Similarity=-1.391  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~y~d~~~~~e~Rv~dLl~~MTleEKigQl~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~lq~~   80 (388)
T d1x38a1           1 DYVLYKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKGATAKEWQDMVDGFQKA   80 (388)
T ss_dssp             CCCGGGCTTSCHHHHHHHHHTTCCHHHHHHHTEEEEGGGCCHHHHHHTTCCEEEECTTCCSSTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99876889999999999999877999999613064445688788985256616636876667898999999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~giPlli~~D~e~G~~~~~~~t~~p~~~~~aat~d~~l~~~~g~~~g~E~ra~Gin~~~aPv~Dv~~~p~~gr~~  160 (388)
T d1x38a1          81 CMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRDPYLVKRIGEATALEVRATGIQYAFAPCIAVCRDPRWGRCY  160 (388)
T ss_dssp             HHTSSSCCCCEEEECCSSSSTTSTTCCCCCCHHHHHHHTCHHHHHHHHHHHHHHHHHTTCCEECCCBCCCCSCTTSTTGG
T ss_pred             HHHCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             87436898836633655675235664210033311025897999999998657887448763367763534564446556


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 et~geDp~l~~~~~~~v~~~~g~~~~~~~~G~~~~~~~~gV~a~~KHFpG~g~~~~~~~~~~~~i~~~~l~~~~l~pf~~  240 (388)
T d1x38a1         161 ESYSEDRRIVQSMTELIPGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVDGINENNTIINREGLMNIHMPAYKN  240 (388)
T ss_dssp             GSSCSSHHHHHHGGGHHHHHHCCCCTTCCTTCCCCCSTTSCBCEEEEETTGGGCGGGCTTCEECCCHHHHHHHTSHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             67667889999988653664110135430122223455674213314436886646740334530488899886145577


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~i~~g~~~vM~s~~~~~g~pa~~s~~~l~~lLR~~~gF~G~VvSD~~~m~~~~~~~~~~~~~~~~~a~~ag~d~~~~~~~  320 (388)
T d1x38a1         241 AMDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRITTPAGSDYSYSVKASILAGLDMIMVPNK  320 (388)
T ss_dssp             HHHTTCCEEEECSSEETTEEGGGCHHHHCCCCCTTSCCCSEEECCTTTTGGGSSSTTTTHHHHHHHHHHHTCCBEECCSC
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCHHHCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCC
T ss_conf             77605651223422357756657999999998730599752424221023312356775789999998517881347853


Q ss_pred             -------------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------------~  278 (815)
                                                                                         +
T Consensus       321 ~~~~~~~l~~av~~G~i~~~rid~sv~Ril~~k~~lGlfd~p~~~~~~~~~i~~~~h~~~a~~aA~~S  388 (388)
T d1x38a1         321 YQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTMGLFENPYADPAMAEQLGKQEHRDLAREAARKS  388 (388)
T ss_dssp             HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHTTTTTCCSCCGGGGGGTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf             89999999999985998999999999999999999489988877824544069999999999999639

>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Indolic compounds 2,3-dioxygenase-like
superfamily: Indolic compounds 2,3-dioxygenase-like
family: Indoleamine 2,3-dioxygenase-like
domain: Hypothetical protein SO4414
species: Shewanella oneidensis [TaxId: 70863]

Probab=100.00  E-value=0  Score=29203.15  Aligned_cols=1  Identities=0%  Similarity=-0.825  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~d~wir~~f~~~n~~le~~y~~~~~~~~~~~~g~~~k~~l~~~g~~~i~~ll~egntdegf~~~f~llgnvg~ym   80 (387)
T d1zeea1           1 YNTEAFDEWIRSRFVELNSQLEQLYYQQTDRANVQEVGTELKHTLESEGRELVKALLDEGNTDEGFDSAFDLLGNVGLYM   80 (387)
T ss_dssp             CHHHHHHHHHHTHHHHHHHHHHHHHHHSSSSSCCSSSCHHHHHHHHHHHHHHHHTTTTTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             96678889999999998799999997477732342000899999999889999999966785231799999975158999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~acrrh~i~ep~re~~~p~~eas~la~~~~as~gv~prf~~~hl~~hn~a~~~~~k~ft~l~de~~f~~~nt~~~~a~~~  160 (387)
T d1zeea1          81 AACRRHEITEPTRETTSPLLEASALAMHIGASIGVTPRFATAHLTTHNRAHNGIYKRFTDLPDEKLFVDYNTKGILAYKR  160 (387)
T ss_dssp             HHHHHTTSSCTTTCSSCSCHHHHHHHHHHHHHHTSCSSCCHHHHTTTCCEETTEECCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99874267785301368414437999988886399923566666315665410676305883578999875799999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 a~~~l~~~~~lgi~hp~~~~ll~~~~~aLq~v~~sn~~l~~~ld~~~Ff~~vRPyykP~rVG~q~YrG~sAgqsa~I~vl  240 (387)
T d1zeea1         161 ASDALLKIQPLGISHPISHDLLRVTKQALQDVIESNQQLFNRLDTDRFFYCVRPYYKPYRVGSVVYRGANAGDFAGINVI  240 (387)
T ss_dssp             HHHHHHTTTTTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHTGGGGCCEEETTEEECCCCTTCSHHHHHH
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHCCCEEECCCCHHHCCCHHHH
T ss_conf             99998764287899754899999999999999999999998439999899856312543237751079971201008999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 D~LLGvcha~dP~ysqfL~dmr~YMPP~hra~L~d~~r~PSl~d~vLsa~~~~~~~~y~~nL~aflevC~~hg~afR~hH  320 (387)
T d1zeea1         241 DLTLGLCFANEASYSQMLVDKFLYMMPEDQQILRECMRRPNLMDDFLQAKGCIHQDWYQENLKLFIEVCELHGQTAIQHH  320 (387)
T ss_dssp             HHHTTSSCTTSHHHHHHHHTTGGGSCHHHHHHHHHHTTSCCHHHHHHHTGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99975563799409999999986179789999999863871689998635650038999999999999999999999999


Q ss_pred             ------------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------------~  278 (815)
                                                                                        .
T Consensus       321 lQlV~KYI~~pS~~~~~q~~~~lTaSGPpl~vLLk~LkKLRD~R~AA~r~Di~tr~~d~~~l~~~l~  387 (387)
T d1zeea1         321 NELVTKYIAEPSVSMEQQHLAKVTASGPPLHVLLASLERLRDRRAAVLRDDIRTRYYDLKKLKDSLR  387 (387)
T ss_dssp             HHHTSCC------------------------CCHHHHHHHHHHHTTCCCSSSCCTHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf             9999999972887434266566447899807899999998665542031137763999999998609

>d2aepa1 b.68.1.1 (A:83-469) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Sialidases
family: Sialidases (neuraminidases)
domain: Influenza neuraminidase
species: Influenza A virus, different strains [TaxId: 11320]

Probab=100.00  E-value=0  Score=29201.54  Aligned_cols=1  Identities=0%  Similarity=0.038  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 e~~n~t~plC~i~gfa~~sKDN~iR~g~~g~i~V~REPyVSC~p~eCr~FaL~QGa~l~~kHsNGTi~DRsp~R~L~s~~   80 (387)
T d2aepa1           1 EYRNWSKPQCKITGFAPFSKDNSIRLSAGGDIWVTREPYVSCDPDKCYQFALGQGTTLNNRHSNDTVHDRTPYRTLLMNE   80 (387)
T ss_dssp             CCCCCCSCBCCCSEEEEEEECCHHHHHTTSCCEEEEEEEEEECSSCEEEEEEEEEEESSSGGGTTCCCSCCTTCEEEEEE
T ss_pred             CCCCCCCCCCCCCCEEEEECCCCEEECCCCCEEEEECCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHEEEECC
T ss_conf             95546676675343046763662575378866998266020284401357631321027866688426654101035513


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 lG~P~~~~s~~~~vaWSsssCHDGk~wl~I~vtG~D~nA~A~i~Y~g~~tdti~SW~~nILRTQESeCvCinG~C~vvmT  160 (387)
T d2aepa1          81 LGVPFHLGTKQVCIAWSSSSCHDGKAWLHVCVTGHDENATASFIYDGRLVDSIGSWSKKILRTQESECVCINGTCTVVMT  160 (387)
T ss_dssp             TTCCCCTTCEEEEECSEEEEEECSSCEEEEEEESCTTSCEEEEEETTEEEEEEECSSSSCCBCCSSCCEEETTEEEEEEE
T ss_pred             CCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEECCEEEEHHHHHHHHHCCCCCCCEEEECCEEEEEEE
T ss_conf             67997558657899863243468862489987768888089999899985326544430120042204898998899992


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 DG~A~~~A~~ri~~i~eGkIik~~~l~g~~~HiEECSCYp~~~~V~CvCRDNW~GsNRP~v~in~~~~~~~~~YvCsg~~  240 (387)
T d2aepa1         161 DGSASGRADTKILFIEEGKIVHISPLSGSAQHVEECSCYPRYPGVRCVCRDNWKGSNRPIVDINVKDYSIVSSYVCSGLV  240 (387)
T ss_dssp             EECSSSCEEEEEEEEETTEEEEEEECCSSCCCCEEEEEEEETTEEEEEEECCSSCSSCEEEEECTTTCCEEEEECCCSSC
T ss_pred             CCCCCCCCEEEEEEEECCEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCEEEECCHHCEEEEEEEECCCC
T ss_conf             68878853068999845638877606888673276330379982699970688877897499540022045305753644


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~DTpRp~D~s~~g~C~~p~~~~G~~GVKGf~F~~Gn~vW~GRTiS~~sRsGfE~~~v~~gwt~~~Sk~~~~~q~iV~n~n  320 (387)
T d2aepa1         241 GDTPRKNDSSSSSHCLNPNNEEGGHGVKGWAFDDGNDVWMGRTISEKFRSGYETFKVIEGWSKPNSKLQINRQVIVDRGN  320 (387)
T ss_dssp             CCSSCCCTTTCCCCSSSCCCSSCSSCCCCCEEEETTEEEEEECSSSSSSEEEEEEEETTTTTSTTCCCEEEEEEEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCC
T ss_conf             78999888776655658888888886163368658973876532376677616999458875878634111479995588


Q ss_pred             ------------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------------~  278 (815)
                                                                                        -
T Consensus       321 wSGYSGsF~~~~k~C~~pCF~VElIRGrp~E~~v~WTS~S~v~fCG~~~~~~~~swpDGA~i~~mp~  387 (387)
T d2aepa1         321 RSGYSGIFSVEGKSCINRCFYVELIRGRKQETEVWWTSNSIVVFCGTSGTYGTGSWPDGADINLMPI  387 (387)
T ss_dssp             ECCCEEEEEEECSSSEEEEEEEEEEEETTTCTTSSCEEEEEEEEEEESSCCCCCCCCCCCCGGGSCC
T ss_pred             CCCCEEEEEECCCCCCCEEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             7752257996899842002899996078764505785187799936789867866899766676669

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=0  Score=29199.26  Aligned_cols=1  Identities=0%  Similarity=-1.257  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~l~~~~~~l~~~a~~g~ld~~~gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~   80 (387)
T d1qvra2           1 TYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKR   80 (387)
T ss_dssp             CCSHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCE
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCCE
T ss_conf             93779999798899998599998748089999999998248899976879999889999999999998089997886966


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT~  160 (387)
T d1qvra2          81 IVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTL  160 (387)
T ss_dssp             EEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECH
T ss_pred             EEEEEHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCH
T ss_conf             89955766652667413689999999998505899669872408888427778774138999999973788516663689


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~ey~~~e~d~al~rrF~~v~v~ep~~~~~~~il~~~~~~~e~~h~v~~~~~ai~~~v~ls~ryi~~r~~PdKAidlld~a  240 (387)
T d1qvra2         161 DEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEA  240 (387)
T ss_dssp             HHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf             99987633679998246112799867889999999999987404774669999999985023666566704688999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~a~~~i~~~s~P~el~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~  320 (387)
T d1qvra2         241 AARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQH  320 (387)
T ss_dssp             HHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99998641589588999999999999999998740145788887653323567999999999999888879999999999


Q ss_pred             ------------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------------~  278 (815)
                                                                                        .
T Consensus       321 ~Le~lr~~le~A~r~gd~e~AaeL~y~~ip~le~el~~l~~~~~~~~lvr~~VteedIA~VVSrWTG  387 (387)
T d1qvra2         321 RLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTG  387 (387)
T ss_dssp             HHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             9999999999999764688788875250799999999999873579877686398999999976109

>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Myotubularin-like phosphatases
domain: Myotubularin-related protein 2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=29196.39  Aligned_cols=1  Identities=0%  Similarity=-1.590  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~edGW~~yd~~~E~~RlGl~~~~WRiS~iN~~Y~lC~SYP~~lVVP~~isD~~l~~~a~fr~~~R~Pvl~w~~~~~~   80 (387)
T d1zsqa2           1 EVFPENGWKLYDPLLEYRRQGIPNESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQ   80 (387)
T ss_dssp             CCCSSCGGGSCCHHHHHHHTTCSCSSEEEECTTTTSSSCTTSCSSEEEETTCCHHHHHHHHHHBGGGCCCEEEEECTTTC
T ss_pred             CCCCCCCHHHCCHHHHHHHCCCCCCCEEEEEECCCCEECCCCCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf             98788763235889999863899888788542699704588998169828589999999987636997607988759998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 a~L~RssqP~~g~~~~r~~ede~~l~~i~~~~~~~~~~~I~D~Rp~~na~an~~~ggG~E~~~~Y~~~~~~f~~i~nih~  160 (387)
T d1zsqa2          81 ATITRCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHV  160 (387)
T ss_dssp             CEEEEECCBCCTTTTCCCHHHHHHHHHHHHHSSSCSSEEEEECSCHHHHHHHHHHTCCCCCTTTCTTEEEEECCCCCHHH
T ss_pred             CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHCCCCCCCHHCCCCCEEEEECCCCHHH
T ss_conf             36885178577756787689999999999737776753555477414688752248986552105675245304665278


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 vr~s~~kl~~~~~~~~~~~~~~s~le~s~WL~~i~~~L~~A~~ia~~l~~~~~sVlVh~sdGwD~T~qvsSL~ql~lDpy  240 (387)
T d1zsqa2         161 MRESLRKLKEIVYPNIEETHWLSNLESTHWLEHIKLILAGALRIADKVESGKTSVVVHSSDGWDRTAQLTSLAMLMLDGY  240 (387)
T ss_dssp             HHHHHHHHHHHHSSCCCGGGHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCEEEECSSSSSHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf             99999999998558875466775243444499999999999999999970897399857888752489999999973832


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 yRTi~GF~~LIekewi~~Gh~F~~R~~h~~~~~~~~e~sPvFl~FLDcV~ql~~q~P~~FEF~e~~L~~l~~h~~s~~fg  320 (387)
T d1zsqa2         241 YRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFG  320 (387)
T ss_dssp             GGSHHHHHHHHHHHTTTTTCCHHHHHTTTCCCTTCTTCCCHHHHHHHHHHHHHHHCTTTCSBCHHHHHHHHHHHHHCSSS
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf             11188899999988873378632342678777566777985699999999998749740112799999999986026646


Q ss_pred             ------------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------------~  278 (815)
                                                                                        +
T Consensus       321 tFl~n~e~eR~~~~~~~~t~Slw~~~~~~~~~f~N~~Y~~~~~~~l~P~~~~~~~~~W~~~ylR~~p  387 (387)
T d1zsqa2         321 TFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYGSYSNHVLYPVASMRHLELWVGYYIRWNP  387 (387)
T ss_dssp             TTCSSSHHHHHHTTHHHHSCCHHHHHHTCGGGGBCTTTTSCSSSCCCCCCSTTTCCCCHHHHTCSCC
T ss_pred             CCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCEEHHHHCCCCCC
T ss_conf             4555899999871768787369999987599855978788999857033675667426753335587

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=0  Score=29193.50  Aligned_cols=1  Identities=0%  Similarity=-0.295  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~y~~~p~~i~ra~G~~l~d~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~~~~~~~~~   80 (387)
T d1vefa1           1 WRALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPM   80 (387)
T ss_dssp             CHHHHHHHHHHBCSCSCCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHH
T ss_pred             CHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEECCCCEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf             96688606531489878898318984749999798799998464187665528969999999999976364666557705


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~  160 (387)
T d1vefa1          81 RGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVE  160 (387)
T ss_dssp             HHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEE
T ss_pred             HHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCE
T ss_conf             99999876530232101111246726799999999876113312325656889996123863478655678878899826


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~p~~d~~~l~~~~~~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PD  240 (387)
T d1vefa1         161 FIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPD  240 (387)
T ss_dssp             EECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS
T ss_pred             EECCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             86889799999756897479999787788888649989999999999976926984002224674677765446783776


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 i~~~gK~l~gG~~~~~~~~~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~~~L~~l~~~~  320 (387)
T d1vefa1         241 ILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPK  320 (387)
T ss_dssp             EEEECGGGGTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCCTT
T ss_pred             EEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             33313257887666332221023102236883553799863001011200010333222057665078999998617984


Q ss_pred             ------------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------------~  278 (815)
                                                                                        +
T Consensus       321 v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~g~l~~~~g~~~ir~~Ppl~it~~~ld~~~~~i~~aLS  387 (387)
T d1vefa1         321 IREVRGMGLMVGLELKEKAAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVLA  387 (387)
T ss_dssp             EEEEEEETTEEEEEESSCSHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             EEEEEECCEEEEEEEECCCHHHHHHHHHHCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf             5788521469999982774699999999789759933899899979713999999999999999859

>d1bxba_ c.1.15.3 (A:) D-xylose isomerase {Thermus aquaticus, subsp. Thermophilus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: Xylose isomerase
domain: D-xylose isomerase
species: Thermus aquaticus, subsp. Thermophilus [TaxId: 271]

Probab=100.00  E-value=0  Score=29192.73  Aligned_cols=1  Identities=0%  Similarity=-1.391  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~~p~~~~~f~~~~W~~~~~g~dpfg~~~~~~~~~~~~~~~~~~lg~~~~~fHd~d~~p~~~~~~e~~~~~~~~k~~~~~   80 (387)
T d1bxba_           1 MYEPKPEHRFTFGLWTVGNVGRDPFGDAVRERLDPVYVVHKLAELGAYGVNLHDEDLIPRGTPPQERDQIVRRFKKALDE   80 (387)
T ss_dssp             CCCCCGGGCEEEEHHHHTCCCCBTTBCCCSCCCCHHHHHHHHHHHTCSEEEEEHHHHSCTTCCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             99998766147997235787889988543112788999999984499878516665588899878999999999998641


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~Gl~~~~~t~nlf~~~~~~~Gs~t~pD~~vR~~Ai~~~k~~id~a~~LGa~~~vlW~G~dG~~~~~~~d~~~~~~~~~e~  160 (387)
T d1bxba_          81 TGLKVPMVTANLFSDPAFKDGAFTSPDPWVRAYALRKSLETMDLGAELGAEIYVVWPGREGAEVEATGKARKVWDWVREA  160 (387)
T ss_dssp             HTCBCCEEECCCSSSGGGGGCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCTTCEESCGGGCGGGTHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             68721122454355623324764689889999999999999999998499979975787766776306799999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 l~~v~~~a~~~g~~~~i~iEpkP~EP~~~~~~~~~~~~l~~~~~~g~~~~~gl~lD~~H~~l~g~~~~~~v~~a~~~gkL  240 (387)
T d1bxba_         161 LNFMAAYAEDQGYGYRFALEPKPNEPRGDIYFATVGSMLAFIHTLDRPERFGLNPEFAHETMAGLNFVHAVAQALDAGKL  240 (387)
T ss_dssp             HHHHHHHHHHHTCCCEEEECCCSSSSSSEESSCSHHHHHHHHTTSSSGGGEEECCBHHHHHHTTCCHHHHHHHHHHTTCB
T ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHEEECCCCCHHHHCCCCHHHHHHHHHHHCCE
T ss_conf             99999977750788379995168988544214889999999998377020754123044530487668899999983964


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 g~vh~Nd~~~~~~D~DL~~g~~~~~~~~~~~~~L~~~gy~G~~~fD~~~~r~~~~~~l~~~~~~~m~~~a~ll~~a~~l~  320 (387)
T d1bxba_         241 FHIDLNDQRMSRFDQDLRFGSENLKAAFFLVDLLESSGYQGPRHFDAHALRTEDEEGVWAFARGCMRTYLILKERAEAFR  320 (387)
T ss_dssp             CCEECCBCCSSSSCCCBCTTSSCHHHHHHHHHHHHHTTCCSCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ECEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             15574777777887666888621889999999998458876433134567788500689999999999999999999988


Q ss_pred             ------------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------------~  278 (815)
                                                                                        .
T Consensus       321 ~d~~~~~~l~ary~~~~a~~~~~~~~~~~~~~~l~~~~~~~~a~~~~s~~qE~Le~l~n~~i~g~~~  387 (387)
T d1bxba_         321 EDPEVKELLAAYYQEDPAALALLGPYSREKAEALKRAELPLEAKRRRGYALERLDQLAVEYLLGVRG  387 (387)
T ss_dssp             TCHHHHHHHHHHTCCCHHHHTTSSSCCSHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHTTCCC
T ss_pred             HCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf             6768999999987212442201100145679984476678431432672499999999999862369

>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: beta-secretase (memapsin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=29190.23  Aligned_cols=1  Identities=0%  Similarity=-0.992  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~l~~~~~~~Y~~~i~IGtP~Q~~~li~DTGSs~lWv~~~~c~~~~~~f~~~~SsT~~~~~~~~~i~Y~~g~~~G   80 (387)
T d2qp8a1           1 FVEMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEG   80 (387)
T ss_dssp             CTTTTTCEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCEEEE
T ss_pred             CCCHHHCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCEEE
T ss_conf             92133025589999899999988999799999989961048926898767881583028871757981899968960999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~D~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~~~l~~~~~~~~~fs~~l~~~~  160 (387)
T d2qp8a1          81 ELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAG  160 (387)
T ss_dssp             EEEEEEEECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCCCSCEEEEECCCS
T ss_pred             EEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEECCCC
T ss_conf             99999999847773367478999982477621134556622334564435788778537888626574215767632455


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~G~l~~Gg~d~~~~~g~~~~~~~~~~~~~~v~~~~i~v~g~~~~~~~~~~~~~~aiiDSGts~i~lp~  240 (387)
T d2qp8a1         161 FPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPK  240 (387)
T ss_dssp             SCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCSBTTBBCCEEEEEETTEECCCCGGGGGSSCEEECTTCCSEEEEH
T ss_pred             CCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCCEEEEEEEEEEECCEECCCCCCCCCCCCEEEECCCCEEECCH
T ss_conf             44456644457784467456233334573586314543336899879999999656654567764169816997086889


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~fp~~~~~~~~~~~~~~~~~~i~p~~y~~~~~~~~~~~~~  320 (387)
T d2qp8a1         241 KVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDD  320 (387)
T ss_dssp             HHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSSTTEEEEEEECHHHHEEEECCTTCCSCE
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCEEEEEECHHHHEEECCCCCCCCCE
T ss_conf             99999999856001465567754453156410038986421340578866621233079998879911551356786766


Q ss_pred             ------------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------------~  278 (815)
                                                                                        .
T Consensus       321 c~~~~~~~~~~~~ILG~~Flr~~y~vfD~~~~~IGfA~a~c~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (387)
T d2qp8a1         321 CYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEGPFVTLDMEDCGYN  387 (387)
T ss_dssp             EEEECEEEESSCEEECHHHHTTEEEEEETTTTEEEEEEETTCCCCSSCCCEEEEEEECCCGGGGSCC
T ss_pred             EEEEEECCCCCCEEEHHHHHCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCC
T ss_conf             8998707999977970894286899998999999999778687788131256798888984652789

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=100.00  E-value=0  Score=29190.23  Aligned_cols=1  Identities=0%  Similarity=-0.892  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~p~~g~W~~~~~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~   80 (387)
T d1k3ia3           1 YTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPG   80 (387)
T ss_dssp             CCCCCTTSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEE
T ss_conf             98788978716786889861017899925999999984057666788776068999988889686667789874452568


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~  160 (387)
T d1k3ia3          81 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  160 (387)
T ss_dssp             EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             EEEECCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCEEEEECCCCCCEE
T ss_conf             99946886898636888621675675574421565664210130355317826652136633354320566348889551


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (387)
T d1k3ia3         161 SLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYD  240 (387)
T ss_dssp             EETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEE
T ss_pred             ECCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCEEEECCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             15887644311346651365042269997079877874686774781486667173166556676657632226378861


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~  320 (387)
T d1k3ia3         241 AVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPV  320 (387)
T ss_dssp             TTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBC
T ss_pred             CCCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCEE
T ss_conf             35882478875367887752100000111113567884060366566543433566058749998884567668899470


Q ss_pred             ------------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------------~  278 (815)
                                                                                        .
T Consensus       321 ~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~~~~~~~~~~~~~e~y~Ppyl~~~~  387 (387)
T d1k3ia3         321 FTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPNYLYNSN  387 (387)
T ss_dssp             CCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEECGGGBCTT
T ss_pred             CEEEEEECCCCEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCHHCCCCC
T ss_conf             1079897999918878899975531279999889999999698767888661148998260405898

>d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-1,4-galactanase
species: Bacillus licheniformis [TaxId: 1402]

Probab=100.00  E-value=0  Score=29192.47  Aligned_cols=1  Identities=0%  Similarity=-0.625  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~f~~g~d~s~~~~~e~~g~~~~~~~g~~~d~~~~lk~~G~n~VRl~vw~~~~~~~~~~~~~g~~~l~~   80 (387)
T d1ur4a_           1 GLYVEKVSGLRKDFIKGVDVSSIIALEESGVAFYNESGKKQDIFKTLKEAGVNYVRVRIWNDPYDANGNGYGGGNNDLEK   80 (387)
T ss_dssp             CCCCCCCTTCCTTCEEEEECTTHHHHHHTTCCCBCTTSCBCCHHHHHHHTTCCEEEEEECSCCBCTTCCBCSTTCCCHHH
T ss_pred             CCCCCCCCCCCHHCEEEEECHHHHHHHHCCCEEECCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHH
T ss_conf             95223578998100777861068999867977889999710599999983998799404447743335767776242999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~a~~~Gl~v~ldlH~sd~wadp~~q~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eigNE~~~~~  160 (387)
T d1ur4a_          81 AIQIGKRATANGMKLLADFHYSDFWADPAKQKAPKAWANLNFEDKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETNGGL  160 (387)
T ss_dssp             HHHHHHHHHHTTCEEEEEECSSSSCCSSSCCCCCGGGTTCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCSSCB
T ss_pred             HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
T ss_conf             99999999987997999867787776877777850321322047999999999999998863699812799724888674


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~ll~~~~~avr~~dp~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~d~ig~s~Y~~w~~~~~~~~~~l~~  240 (387)
T d1ur4a_         161 AGETDWAKMSQLFNAGSQAVRETDSNILVALHFTNPETSGRYAWIAETLHRHHVDYDVFASSYYPFWHGTLKNLTSVLTS  240 (387)
T ss_dssp             TTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEEECCTTSTTHHHHHHHHHHHTTCCCSEEEEEECTTTSCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHH
T ss_conf             67688999999999999998730887527872267653277889999998659876400202312347608999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 l~~~~~k~v~v~E~~~~~t~~~~d~~~~~~~~~~~~~~~p~s~~gQ~~~l~~l~~~~~~~~~~G~G~~YWep~w~~~~~~  320 (387)
T d1ur4a_         241 VADTYGKKVMVAETSYTYTAEDGDGHGNTAPKNGQTLNNPVTVQGQANAVRDVIQAVSDVGEAGIGVFYWEPAWIPVGPA  320 (387)
T ss_dssp             HHHHHCCEEEEEEECCCSCSCCSSSSCCSSSCTTSCCCSCSSHHHHHHHHHHHHHHHHTTCTTEEEEEEECTTCCCSSCG
T ss_pred             HHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
T ss_conf             99983996389985044347786444765787633356777899999999999999985478805999735763136777


Q ss_pred             ------------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------------~  278 (815)
                                                                                        -
T Consensus       321 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~w~n~aLFd~~g~~l~~l~~f~~~~~~~~~  387 (387)
T d1ur4a_         321 HRLEKNKALWETYGSGWATSYAAEYDPEDAGKWFGGSAVDNQALFDFKGRPLPSLHVFQYVDTGTPF  387 (387)
T ss_dssp             GGHHHHHHHHHHHCCSSBCGGGTTTCTTTHHHHCBSCSCGGGCSBCTTSCBCGGGGHHHHHHHCCC-
T ss_pred             CCCCCCHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
T ss_conf             6543450345412642032213324641123456777411210335589867577877413478999

>d2ex0a1 c.87.1.9 (A:26-412) Alpha-2,3/2,6-sialyltransferase/sialidase {Pasteurella multocida [TaxId: 747]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Sialyltransferase-like
domain: Alpha-2,3/2,6-sialyltransferase/sialidase
species: Pasteurella multocida [TaxId: 747]

Probab=100.00  E-value=0  Score=29197.95  Aligned_cols=1  Identities=0%  Similarity=-0.327  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ktlEvYvD~AsLPslqqlm~iiq~ne~~~n~rli~w~R~~i~d~~l~~~~n~~F~~~~~n~~~~~~~~il~~~~~~~~in   80 (387)
T d2ex0a1           1 KTITLYLDPASLPALNQLMDFTQNNEDKTHPRIFGLSRFKIPDNIITQYQNIHFVELKDNRPTEALFTILDQYPGNIELN   80 (387)
T ss_dssp             EEEEEEEESSSHHHHHHHHHHHHTTTCSSSCEEEEETTCCCCHHHHTTCSSEEECCEETTEECTHHHHHHTTCCSCEEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf             95699954355615999999986046778821577742368778987301021354457895299999997174433799


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 i~~Nt~hS~d~~~~I~~~~~~~~~kv~i~~L~lYDDGSaEYV~l~~~k~~d~~~~~~~~~~~l~~~l~~Gt~~~~n~~~~  160 (387)
T d2ex0a1          81 IHLNIAHSVQLIRPILAYRFKHLDRVSIQQLNLYDDGSMEYVDLEKEENKDISAEIKQAEKQLSHYLLTGKIKFDNPTIA  160 (387)
T ss_dssp             EEEESTTHHHHHHHHHHHHHHTTTTEEEEEEEEECCSHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHCCCCCSCHHHH
T ss_pred             EECCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf             82121767776899999998740573048887752885888667764133034445678899988876387778985101


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~Y~w~qlypt~YH~Lr~Dyf~~~~~L~~Lk~yL~~n~kqM~Wd~f~~fn~~Qk~lf~~~vgf~~E~~qq~~~q~~nFiFt  240 (387)
T d2ex0a1         161 RYVWQSAFPVKYHFLSTDYFEKAEFLQPLKEYLAENYQKMDWTAYQQLTPEQQAFYLTLVGFNDEVKQSLEVQQAKFIFT  240 (387)
T ss_dssp             TTCGGGTSCEEEEESCHHHHHHCGGGHHHHHHHGGGEEECCSCHHHHSCHHHHHHHHHHHTCCHHHHHHTCCSSEEEEEE
T ss_pred             EEEHHHCCCCHHHHEEHHHHHCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEE
T ss_conf             33044406743431105565057452479999840333467523200698888899987179899999997267875997


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 GTts~~~~~e~~eyyaqqQInvin~a~ne~s~~~~g~~ydLfFKGHP~~~~~N~~I~~~~~~mi~IpakIpFEvLmMTg~  320 (387)
T d2ex0a1         241 GTTTWEGNTDVREYYAQQQLNLLNHFTQAEGDLFIGDHYKIYFKGHPRGGEINDYILNNAKNITNIPANISFEVLMMTGL  320 (387)
T ss_dssp             CCCCCCSSCCCHHHHHHHHHHHHHHHHSTTSTTCCCTTEEEEEECCTTCTHHHHHHHHHSSSCEECCTTSCHHHHHHTTC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEECCCCCCCHHHHHHHHCCHHHHCCCCCCCHHHHHHCCC
T ss_conf             13455676306778899989998732388996530675115772699865056899743355522644586299987278


Q ss_pred             ------------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------------~  278 (815)
                                                                                        -
T Consensus       321 LPd~VGG~aSSlyFsiP~e~in~ivFtss~~~~s~~d~~~~~lvqVM~~L~iv~~~~V~fw~~~k~~  387 (387)
T d2ex0a1         321 LPDKVGGVASSLYFSLPKEKISHIIFTSNKQVKSKEDALNNPYVKVMRRLGIIDESQVIFWDSLKQL  387 (387)
T ss_dssp             CCSEEEEECCGGGGGSCGGGEEEEEECCCSSCSSHHHHHTSHHHHHHHHTTSCCGGGEEEGGGSCCC
T ss_pred             CCHHHCCCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHCCHHHHHHHHCCCCHHHEEEHHHHHCC
T ss_conf             8054336000258975533124899933764256565653839999999777766763676753039

>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=0  Score=29115.49  Aligned_cols=1  Identities=0%  Similarity=-1.391  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~~~~~~~~~~pe~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~rpTPLi~~~~Ls~~lgg~~Iy~K~E~lnptGS   80 (386)
T d1v8za1           1 MWFGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGA   80 (386)
T ss_dssp             CEETTEECCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSTTSB
T ss_pred             CCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf             97678098848788899999999999999639899999999987338999855173766876289739999666877877


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~KdR~a~~~i~~a~~~G~~~~v~~~s~Gn~g~a~A~aaa~~G~~~~i~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~  160 (386)
T d1v8za1          81 HKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRT  160 (386)
T ss_dssp             THHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEEECSTTSS
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCH
T ss_conf             64168999999876528831675225226999999999976986430344115544179999998649827994687430


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~q~~~~~g~~pd~vv~~vGgG~~~~g~~~~~~  240 (386)
T d1v8za1         161 LKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFV  240 (386)
T ss_dssp             HHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             88889989999986056654214544574336133310013544537888998628989889977887178899998764


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~v~iigvep~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v  320 (386)
T d1v8za1         241 NDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYV  320 (386)
T ss_dssp             TCTTSEEEEEEEEETBGGGTBSCCHHHHCEEEEETTEEEEECBCTTSCBCCCCCSSTTSCCSBCCHHHHHHHHTTSEEEE
T ss_pred             HCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEE
T ss_conf             23670599970576643355532000357655551021001068777603443222221245530577888754854999


Q ss_pred             -----------------------------------------------------------------C
Q ss_conf             -----------------------------------------------------------------9
Q 003496          278 -----------------------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------------------~  278 (815)
                                                                                       .
T Consensus       321 ~VtD~E~~~a~~~La~~EGI~~~~~sa~alA~a~kla~~~~~~~~VV~iltG~G~kD~~~~~~~~g  386 (386)
T d1v8za1         321 TVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKVSG  386 (386)
T ss_dssp             EEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTSCTTCEEEEEECBBSGGGHHHHHHHHC
T ss_pred             EECHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHCC
T ss_conf             989999999999999965993566799999999998787199897999968885212999998539

>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=29115.34  Aligned_cols=1  Identities=0%  Similarity=-0.958  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~pw~v~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~rRg~~f~hrd~~~il~~~~~gkp~~vytG   80 (386)
T d1r6ta2           1 EDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTG   80 (386)
T ss_dssp             CCEESSSCEECSCTTCCCHHHHHHHHTCEECCHHHHHHHHHHHCSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHCCEEEECCCHHHHHHHHHCCCCEEEEEC
T ss_conf             98438660668876666699999984888688899999997536886154533604422679999999974998589945


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~PSg~~lHlGh~v~~~~~~~~q~~~~~~v~i~iaD~~a~~~~~~~~~e~~~~~~e~~~~~lA~GlDp~kt~i~~~s~~~  160 (386)
T d1r6ta2          81 RGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYM  160 (386)
T ss_dssp             ECCCTTCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEEHHHHG
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHH
T ss_conf             17998402899999999999999721324489932517640456999999999999999999817895002899684799


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~l~~~~~~~~~l~r~~t~~~~k~~~~~~~~~~~g~~~YP~lQaaDil~~~~d~~~~~~~~~~~lvpvG~DQ~~h~~ltR  240 (386)
T d1r6ta2         161 GMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTR  240 (386)
T ss_dssp             GGCTTHHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             98899999999998756514888864335677676531279889999983470542255665420110262899999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 Dia~r~~~~~p~~l~~~~lpgL~G~~~KMSsS~~~s~I~l~D~~~~i~~KI~~~~~~~~~~~~~e~~~~~g~~~~~v~~~  320 (386)
T d1r6ta2         241 DVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFM  320 (386)
T ss_dssp             HHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHH
T ss_pred             HHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             99998278886221144556778743445567777434635988899997661143168765446000389841317999


Q ss_pred             -----------------------------------------------------------------C
Q ss_conf             -----------------------------------------------------------------9
Q 003496          278 -----------------------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------------------~  278 (815)
                                                                                       .
T Consensus       321 ~l~~f~~d~~~~eel~~~y~~G~l~~gd~K~~lae~l~~~l~~~rekr~~~~~~~v~~~l~~~kl~  386 (386)
T d1r6ta2         321 YLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLA  386 (386)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTSCCCCC
T ss_pred             HHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             999986987589999999976999989999999999999978999999998888999985546799

>d1muwa_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces olivochromogenes [TaxId: 1963]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: Xylose isomerase
domain: D-xylose isomerase
species: Streptomyces olivochromogenes [TaxId: 1963]

Probab=100.00  E-value=0  Score=29114.21  Aligned_cols=1  Identities=0%  Similarity=-0.626  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~p~~~~rF~~~~Wt~~~~g~dpFG~~tr~~~~~~d~~~~~~~lG~~~~~fHd~D~~P~~~~~~e~~~~~~~i~~~l~~   80 (386)
T d1muwa_           1 SYQPTPEDRFTFGLWTVGWQGRDPFGDATRPALDPVETVQRLAELGAHGVTFHDDDLIPFGSSDTERESHIKRFRQALDA   80 (386)
T ss_dssp             CCCCCGGGCEEEEHHHHTCCCCBTTBCCSSCCCCHHHHHHHHHHHTCCEEEEEHHHHSCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99898445335886205765879999888999898999999998599879747775688899867889999999999985


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~Gl~~~~~t~nlf~~p~~~~Ga~tspD~~vR~~Ai~~~k~aiDia~~LGa~~vv~W~G~~G~~~~~~~d~~~~~~~l~e~  160 (386)
T d1muwa_          81 TGMTVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAKTYVAWGGREGAESGAAKDVRVALDRMKEA  160 (386)
T ss_dssp             HTCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCSEEEECCTTCEESSTTSCCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCEECCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             29701134156410200113787792999999999999999999998399848984787755677667999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 l~~v~dya~~~g~~v~~~IEpkP~EP~~~~~~~t~~~al~~l~~~g~~~~~glnlD~gHa~~ag~~~~~~ia~a~~~grL  240 (386)
T d1muwa_         161 FDLLGEYVTSQGYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGIAQALWAGKL  240 (386)
T ss_dssp             HHHHHHHHHHHTCCCEEEECCCSSSSSSEESSCSHHHHHHHHTTSSSGGGEEECCBHHHHHTTTCCHHHHHHHHHHTTCB
T ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCCCEECCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCE
T ss_conf             99999999972999369982057887553310769999999997299531346644465330477715899999873867


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~vhlNd~~~~~~D~DL~fG~~~~~~~~~~~~~L~~~Gy~G~~~FD~k~~R~~~~~~~~~~~~~~m~~~a~~~~~a~~~~  320 (386)
T d1muwa_         241 FHIDLNGQSGIKYDQDLRFGAGDLRAAFWLVDLLESAGYEGPRHFDFKPPRTEDIDGVWASAAGCMRNYLILKERAAAFR  320 (386)
T ss_dssp             CCCEECBCCSSSSCCCBCTTSSSHHHHHHHHHHHHHHTCCSCEEECCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             34211533477743456676401789999999999559988330540367788766799999999999999999999865


Q ss_pred             -----------------------------------------------------------------C
Q ss_conf             -----------------------------------------------------------------9
Q 003496          278 -----------------------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------------------~  278 (815)
                                                                                       .
T Consensus       321 ~d~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~e~Le~l~~~~l~g~r  386 (386)
T d1muwa_         321 ADPEVQEALRASRLDELAQPTAADGVQELLADRTAFEDFDVDAAAARGMAFERLDQLAMDHLLGAR  386 (386)
T ss_dssp             HCHHHHHHHHHTTHHHHTSCSCTTCHHHHHHCGGGTTTCCHHHHHHSCCCHHHHHHHHHHHHHTCC
T ss_pred             HCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf             499999999986554113544445256677776520013813343255029999999999971379

>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 7, HDAC7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=29113.62  Aligned_cols=1  Identities=0%  Similarity=-0.825  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~Tg~vyd~~~l~H~~~~g~~~~HPE~p~Rl~~i~~~L~~~gl~~~~~~~~p~~a~~~~L~~vH~~~YI~~l~~~~~   80 (386)
T d3c10a1           1 TLPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPL   80 (386)
T ss_dssp             CCTTCEEEECCGGGGGCCCTTCCGGGCSSCTHHHHHHHHHHHHTTCGGGSEEECCCCCCHHHHTTTSCHHHHHHHHCCTT
T ss_pred             CCCCCEEEEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHCCHHHHHHHHHCHH
T ss_conf             99887799977788557899999899897989999999999966996578376789899999988299999999862605


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dt~~~~~~s~~Aa~~aaG~~~~a~~~v~~~~~~~afa~~rppGHHA~~~  160 (386)
T d3c10a1          81 SRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHS  160 (386)
T ss_dssp             CSCCCCHHHHHHHHHC---CBCTTSCEESSSSCEECTTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCSSCCTTCBTT
T ss_pred             HHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf             43112233321034555420367777666888645761089999998457888776542376544441244323545655


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~GFC~fNdvAiaa~~l~~~~~~~rV~iiD~DvHhGnGTq~if~~~~~V~~~SiH~~~~~~~~p~tG~~~e~G~g~g~g  240 (386)
T d3c10a1         161 TAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEG  240 (386)
T ss_dssp             BCBTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECTTTTSTTCCCCTTCCCCGGGTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
T ss_conf             66873433288999999986214677437742467887604676425543354333566545678889887638877766


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~n~pl~~~l~~~~~d~~yl~~~~~~l~~~~~~f~PdlIvvsaG~D~~~~D~~pLg~l~lt~~~~~~~~~~l~~~~~~~  320 (386)
T d3c10a1         241 FNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGA  320 (386)
T ss_dssp             CEEEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCCGGGCCCBBCHHHHHHHHHHHTTSGGGC
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             64456410136799983999999999999999866998899968825334675356367558999999999999873998


Q ss_pred             -----------------------------------------------------------------C
Q ss_conf             -----------------------------------------------------------------9
Q 003496          278 -----------------------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------------------~  278 (815)
                                                                                       .
T Consensus       321 vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~  386 (386)
T d3c10a1         321 VVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVHSKYWGCMQR  386 (386)
T ss_dssp             EEEEECSCCCHHHHHHHHHHHHHHHHTCCCCGGGCSGGGSCCCHHHHHHHHHHHHHHTTTCGGGCC
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             799968888865899999999999838999987841013588888999999999999886076329

>d1v5da_ a.102.1.2 (A:) Chitosanase {Bacillus sp., strain k17 [TaxId: 1409]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Chitosanase
species: Bacillus sp., strain k17 [TaxId: 1409]

Probab=100.00  E-value=0  Score=29113.21  Aligned_cols=1  Identities=0%  Similarity=-0.427  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~pfp~~~~y~~~~~~~~~~q~~~~~~~~~~y~~wk~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~t~SEGqgYGM   80 (386)
T d1v5da_           1 AKEMKPFPQQVNYAGVIKPNHVTQESLNASVRSYYDNWKKKYLKNDLSSLPGGYYVKGEITGDADGFKPLGTSEGQGYGM   80 (386)
T ss_dssp             CCCSSCSCCCCCCTTCCCCCSSCHHHHHHHHHHHHHHHHHHHEECCCTTSTTCCEECCCCCCCBTTBCCCEEHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHH
T ss_conf             98788898753536774888667899999999999999999853367777764001465556788898753005888999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 l~Av~~~~~~~nd~~~Fd~lw~wt~~~l~~~~~~L~aW~~~~~~~~v~d~nsAtDgDl~iA~ALl~A~~~Wg~~~~~~Y~  160 (386)
T d1v5da_          81 IITVLMAGYDSNAQKIYDGLFKTARTFKSSQNPNLMGWVVADSKKAQGHFDSATDGDLDIAYSLLLAHKQWGSNGTVNYL  160 (386)
T ss_dssp             HHHHHTBTTBTTHHHHHHHHHHHHHHTBCSSCTTSBCSEECSSGGGTTTSCCCHHHHHHHHHHHHHHHHHHCSSSSSCHH
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             99998476775619999999999999860679998668857999877799988768999999999999774885178999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~A~~ii~~i~~~~~~~~~~~l~~g~~~~~~~~~~npSY~~p~~~~~fa~~~~d~~W~~v~~~~~~ll~~~~~~~~~~tG  240 (386)
T d1v5da_         161 KEAQDMITKGIKASNVTNNNQLNLGDWDSKSSLDTRPSDWMMSHLRAFYEFTGDKTWLTVINNLYDVYTQFSNKYSPNTG  240 (386)
T ss_dssp             HHHHHHHHHTHHHHHBCTTSSBCSSTTSCTTCCCBCGGGCCHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999998750578887426888788898755831054999999997458972999999999999998763188768


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 L~PDw~~~~~~~~~~~~~~~~~~~~~~~~ydA~Rvpl~la~d~~w~g~~~a~~~~~~~~~f~~~~~~~~~~~i~~~y~l~  320 (386)
T d1v5da_         241 LISDFVVKNPPQPAPKDFLDESEYTNAYYYNASRVPLRIVMDYAMYGEKRSKVISDKVSSWIQNKTNGNPSKIVDGYQLN  320 (386)
T ss_dssp             CCCSSEETTTTEECCTTGGGSCTTTTSBCTTGGGHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTTCGGGCCSCBCTT
T ss_pred             CCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             99631212786767765677777888724119999999998886427804789999999999986147976556632147


Q ss_pred             -----------------------------------------------------------------C
Q ss_conf             -----------------------------------------------------------------9
Q 003496          278 -----------------------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------------------~  278 (815)
                                                                                       +
T Consensus       321 G~~~~~~~~~~~~a~~~~aa~~~~~~~~~~~~~~~~~~~~~~~YY~~~L~Ll~ll~lsGn~~~p~p  386 (386)
T d1v5da_         321 GSNIGSYPTAVFVSPFIAASITSSNNQKWVNSGWDWMKNKRERYFSDSYNLLTMLFITGNWWKPVP  386 (386)
T ss_dssp             SCBCCCSCCHHHHHHHHHTTTTCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSCCCCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             742688875899999999862873169999998733357778857999999999997388888998

>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Iron-containing alcohol dehydrogenase
domain: Lactaldehyde reductase FucO
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=29042.50  Aligned_cols=1  Identities=0%  Similarity=-1.391  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 m~~~~~~~~~~~fG~g~l~~l~~~l~~~G~k~~Livt~~~~~~~g~~~~v~~~L~~~gi~~~vf~~v~~~p~~~~v~~~~   80 (385)
T d1rrma_           1 MANRMILNETAWFGRGAVGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGL   80 (385)
T ss_dssp             CCEEEECCSEEEESTTGGGGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHH
T ss_pred             CCCEEECCCCCEECCCHHHHHHHHHHHCCCCEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHH
T ss_conf             99526669972798689999999999769997999989655658089999999987598599986826997989999886


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~D~IiaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~lP~i~IPTtagTgse~t~~avi~~~~~~~  160 (385)
T d1rrma_          81 GVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGTAAEVTINYVITDEEKRR  160 (385)
T ss_dssp             HHHHHHTCSEEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSSCCTTTCSEEEEEETTTTE
T ss_pred             HHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             54303588889866988422699999999638753026665043222478774674366544643234442224444331


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~a~~g~Dal~h~~E~~~s~~~~p~~~~~a~~a~~~~~~~l~~~~~~~~~~~~  240 (385)
T d1rrma_         161 KFVCVDPHDIPQVAFIDADMMDGMPPALKAATGVDALTHAIEGYITRGAWALTDALHIKAIEIIAGALRGSVAGDKDAGE  240 (385)
T ss_dssp             EEEEECGGGCCSEEEECGGGTTTSCHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             EEEEEEEECCCCCCCCHHHHHCCCCHHEEEECHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             01355420135322006777327980126400364664112111113320001277899999999752432000056899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~a~~~ag~~~~~~~~g~~hai~~~l~~~~~i~HG~a~ai~lp~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  320 (385)
T d1rrma_         241 EMALGQYVAGMGFSNVGLGLVHGMAHPLGAFYNTPHGVANAILLPHVMRYNADFTGEKYRDIARVMGVKVEGMSLEEARN  320 (385)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHTTCCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf             99999999976651676400053203200233457510001436889987335269999999998388656999899999


Q ss_pred             ----------------------------------------------------------------C
Q ss_conf             ----------------------------------------------------------------9
Q 003496          278 ----------------------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------------------~  278 (815)
                                                                                      .
T Consensus       321 ~~i~~i~~~~~~lglP~~L~d~Gv~~~~l~~ia~~a~~~~~~~~nP~~~t~~di~~il~~a~~g~  385 (385)
T d1rrma_         321 AAVEAVFALNRDVGIPPHLRDVGVRKEDIPALAQAALDDVCTGGNPREATLEDIVELYHTAWEGG  385 (385)
T ss_dssp             HHHHHHHHHHHHTTCCSSGGGGTCCGGGHHHHHHHHHTCGGGGGCSSCCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             99999999999859999988829899999999999985720059994389999999999997489

>d1uhga_ e.1.1.1 (A:) Ovalbumin {Hen (Gallus gallus) [TaxId: 9031]}

class: Multi-domain proteins (alpha and beta)
fold: Serpins
superfamily: Serpins
family: Serpins
domain: Ovalbumin
species: Hen (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=0  Score=29041.62  Aligned_cols=1  Identities=0%  Similarity=-1.256  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~l~~~~~~Fa~~l~~~l~~~~~~~N~v~SP~si~~~Laml~~GA~g~T~~el~~~L~~~~~~~~~~~~~~~~~~~~~~~   80 (385)
T d1uhga_           1 GSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNVH   80 (385)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHCTTSCEEECHHHHHHHHHHHHTTCCHHHHHHHHHHHTCTTCTTCSHHHHTTTTSCTTTT
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHH
T ss_conf             96789999999999999861396986998889999999999986775899999997388877664301444203388999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~~l~v~~~~~~~~~f~~~~~~~y~~~~~~~df~~~~~~a~~~IN~wv~~~T~g~i~~~  160 (385)
T d1uhga_          81 SSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNV  160 (385)
T ss_dssp             HHHHHHHHHHTSCCSSEEEEEEEEEEEETTSCBCHHHHHHHHHHCSSCEEEECCTTTHHHHHHHHHHHHHHHTTTCSCCC
T ss_pred             HHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             99999999963899873699998888866765448899999987097334564311799999999999998706886566


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 v~~~~l~~~t~l~lina~~f~~~W~~~F~~~~t~~~~F~~~~~~~~~v~~m~~~~~~~~~~~~~~~~~~v~Lpy~~~~~s  240 (385)
T d1uhga_         161 LQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFASGTMS  240 (385)
T ss_dssp             SCTTSSCTTCCEEEEEEEEEEECEEECCCGGGCEEEEECCCC--CEEEEEEEEEEEEEEEEEGGGTEEEEEEEBTTSSEE
T ss_pred             CCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEHHHEECCCCCCCCCCCCCCEEEECCCCCCCEE
T ss_conf             78667896544114542799542046664555540664258994353002001021234545566817887132489758


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 m~iilP~~~~~l~~~~~~l~~~~l~~~~~~~~~~~~~v~l~lPkF~i~~~~dl~~~L~~lGl~~~F~~~adfs~is~~~~  320 (385)
T d1uhga_         241 MLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAES  320 (385)
T ss_dssp             EEEEEESSTTCHHHHHHHCCHHHHHHHTSTTTCEEEEEEEEEECEEEEEEEEHHHHHHHHTCCGGGSTTCCCTTTBCSTT
T ss_pred             EEEEECCCCCCHHHHHHHCCHHHHHHHHHHHCCCCEEEEEEEEEEEEECCEEHHHHHHHCCCCHHHCCCCCCCCCCCCCC
T ss_conf             99997776676155554213556999763430424599997104876311007998875598111068787656779998


Q ss_pred             ----------------------------------------------------------------C
Q ss_conf             ----------------------------------------------------------------9
Q 003496          278 ----------------------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------------------~  278 (815)
                                                                                      +
T Consensus       321 l~vs~i~q~~~i~v~E~Gt~a~a~t~~~~~~~~~~~~f~~drPF~f~I~~~~t~~~lf~G~v~~P  385 (385)
T d1uhga_         321 LKISQAVHAAHAEINEAGREVVGSAEAGVDAASVSEEFRADHPFLFCIKHIATNAVLFFGRCVSP  385 (385)
T ss_dssp             CCEEEEEEEEEEEECSCEEECCCHHHHHHHHTTCCCEEECCSCEEEEEEETTTCCEEEEEEESCC
T ss_pred             CEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEECCC
T ss_conf             06552788999998998713010120001367899779913999999998999968999994398

>d1xmxa_ c.52.1.26 (A:) Hypothetical protein VC1899 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: Restriction endonuclease-like
family: Hypothetical protein VC1899
domain: Hypothetical protein VC1899
species: Vibrio cholerae [TaxId: 666]

Probab=100.00  E-value=0  Score=29041.00  Aligned_cols=1  Identities=0%  Similarity=-1.324  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~m~~hv~~i~~~~~~n~~p~l~~~~~p~~~v~i~t~~~~~~~e~L~~~lk~~~i~~e~~~i~~~~d~~~I~~~l~~~~~   80 (385)
T d1xmxa_           1 NAMAIHVGIIDQDPVRLVTPLLDHRTVSRHIIFIGDHTQTVIYQRLSDVLNKRNISTDFFEIPAGSNTSAIKSAIRELAE   80 (385)
T ss_dssp             CTTEEEEEECCSSCHHHHHHHHSTTCCCCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEECCCCHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             96289999963772435568654788886699996743699999999999846986168745875576999999999998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~v~lN~TGGTK~Msl~ay~~~r~~~~~~~Y~d~~~~rl~~l~~~~~~~~~~~~~i~i~d~l~~~~~~~~~~~~  160 (385)
T d1xmxa_          81 TLKARGEEVKFNASCGLRHRLLSAYEVFRSYHWPIFVVEPNSDCLCWLYPEGNNDTQVQDRITIADYLTIFGARGEFNEH  160 (385)
T ss_dssp             HHHHHTCEEEEECSSSCHHHHHHHHHHHHHTTCCEEEECTTTCEEEEEESTTSCCEECCCCCCHHHHHHHTTCEEECC--
T ss_pred             HHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCHHCCCC
T ss_conf             62203873999916766888999999998559846999769966999667767675577878899999984033000566


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~l~~~~~~~~~el~~~l~~ln~~~~~~~~~~~~~~~~s~~~~~~~~~~~ll~~l~~~~~~~~~~~~l~F  240 (385)
T d1xmxa_         161 QLSPQLDQQLYQLGERWASNALELGPGLATLNYLATTCRKEQKLDVELSDKQQGYRELNLLLSDLVEAKIASYENGILTF  240 (385)
T ss_dssp             --CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSEEECCHHHHTCHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCEEEE
T ss_conf             68866789999999998634776767999999986512212010244462244536788999988753432214863231


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~a~~Fl~G~WLE~yv~~~l~~~~~~~~~~~d~~~~v~i~~~~~~~~~~nElDv~~~~~~~l~~IECKt~~~~~~~~~  320 (385)
T d1xmxa_         241 INEEARRFANGEWLETLVHSTVKQIQDDMPTIQDRSLNVQVYRQLGEREVRNELDVATVVNNKLHIIECKTKGMRDDGDD  320 (385)
T ss_dssp             SSHHHHHHHHTTHHHHHHHHHHHHHHTTCTTEEEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEESSCCCC-CCC
T ss_pred             CHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCHHH
T ss_conf             41778743588089999999999877540445026767798326888765532689999799999999568887754578


Q ss_pred             ----------------------------------------------------------------C
Q ss_conf             ----------------------------------------------------------------9
Q 003496          278 ----------------------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------------------~  278 (815)
                                                                                      +
T Consensus       321 ~l~kl~~l~~~lgG~~~r~~LVs~~~~~~~~~~ra~~~~i~vI~~~~l~~l~~~L~~w~~~~~~~  385 (385)
T d1xmxa_         321 TLYKLESLRDLLGGLQARAMLVSFRPLRHNDITRAEDLGLALIGPDELKDLKTHLTQWFKAAGGN  385 (385)
T ss_dssp             HHHHHHHHHHHHHGGGCEEEEEESSCCCHHHHHHHHHHTCEEECGGGGGGHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCC
T ss_conf             89999999998289532499999058847799999866949983888899999999999973799

>d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: DHH phosphoesterases
superfamily: DHH phosphoesterases
family: Exonuclease RecJ
domain: Exonuclease RecJ
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=0  Score=29039.64  Aligned_cols=1  Identities=0%  Similarity=-0.428  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~l~~m~~A~~~i~~ai~~~e~I~I~gDyD~DGitS~aIl~~~L~~~g~~~~~~Ip~R~~eGyGl~~~~i~~~~~~   80 (385)
T d1ir6a_           1 PLALLPLKGLREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHLEA   80 (385)
T ss_dssp             CCCCCCCTTHHHHHHHHHHHHHTTCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEECCCTTTSCSSCCGGGHHHHHTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHC
T ss_conf             97676735899999999999977997999927786067999999999998899759987786656998689999998533


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~LiItvD~G~~~~e~i~~~~~~gi~vIv~DHH~~~~~~~~~~iv~~~~~~~~~~~~~gaGva~~l~~~l~~~~~~~~~~  160 (385)
T d1ir6a_          81 SDLFLTVDCGITNHAELRELLENGVEVIVTDHHTPGKTPPPGLVVHPALTPDLKEKPTGAGVAFLLLWALHERLGLPPPL  160 (385)
T ss_dssp             CSEEEESSCCTTCGGGHHHHTTSCCEEEEECCSCCCSSCCSSEEECGGGSTTCCCCCCHHHHHHHHHHHHHHTTTCCCCG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHCHH
T ss_conf             77699823652203667667632872321465465657401212157678850101302578999999886432442202


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~l~L~aiGtiaD~~pL~~eNR~lv~~gl~~~~~~~~~g~~~L~~~~~~~~~~~di~f~i~P~iNA~GRl~~a~~a~~lL  240 (385)
T d1ir6a_         161 EYADLAAVGTIADVAPLWGWNRALVKEGLARIPASSWVGLRLLAEAVGYTGKAVEVAFRIAPRINAASRLGEAEKALRLL  240 (385)
T ss_dssp             GGHHHHHHHHHHTTCCCSSHHHHHHHHHHHHCTTCSCHHHHHHHHHTTCCSCSHHHHHTHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf             44455456455455401367889987777785114558899997542213201221111131113334444310212444


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~a~~~a~~l~~~N~~Rk~~~~~i~~~a~~~~~~~~~~i~~~~~~~~~GviGivAsrl~~~~~kP~iv~~~~kGS  320 (385)
T d1ir6a_         241 LTDDAAEAQALVGELHRLNARRQTLEEAMLRKLLPQADPEAKAIVLLDPEGHPGVMGIVASRILEATLRPVFLVAQGKGT  320 (385)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCTTSSSEEEECTTCCHHHHHHHHHHHHHHHCSCEEEEETTEEE
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCEEE
T ss_conf             41236789999999887777899999999999875430335159995377662022045899999729978999667387


Q ss_pred             ----------------------------------------------------------------C
Q ss_conf             ----------------------------------------------------------------9
Q 003496          278 ----------------------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------------------~  278 (815)
                                                                                      -
T Consensus       321 ~Rs~~g~~l~~~l~~~~~~l~~~GGH~~AaG~~i~~~~~~~F~~~l~~~~~~~~~~~~~~~~~d~  385 (385)
T d1ir6a_         321 VRSLAPISAVEALRSAEDLLLRYGGHKEAAGFAMDEALFPAFKARVEAYAARFPDPVREVALLDL  385 (385)
T ss_dssp             EECCSSCCHHHHHHTTGGGCSEEEECSSEEEEECCGGGHHHHHHHHHHHHHSSCCTTTTCCSTTC
T ss_pred             EECCCCCCHHHHHHHHHCHHHCCCCHHHCCEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHCCC
T ss_conf             76899978999999874530137991670467974989999999999999856353220442479

>d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease, catalytic domain {Klebsiella aerogenes [TaxId: 28451]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: alpha-subunit of urease, catalytic domain
domain: alpha-subunit of urease, catalytic domain
species: Klebsiella aerogenes [TaxId: 28451]

Probab=100.00  E-value=0  Score=29049.50  Aligned_cols=1  Identities=0%  Similarity=-0.625  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 GiDtHvHfi~Pqq~~~al~sGiTT~iGgGtGPa~Gt~att~tpg~~~~~~ml~a~d~~P~N~g~~gkGn~s~~~~l~eqi   80 (385)
T d1ejxc2           1 GIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRMLQAADSLPVNIGLLGKGNVSQPDALREQV   80 (385)
T ss_dssp             EEEEEEECSCTTHHHHHHHTTEEEEEEECCSSSHHHHHSSCCCHHHHHHHHHHHHTTSSSEEEEEEECCCSSHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
T ss_conf             95545334488789999866973663686688877777573888899999998655078331052116669868999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~AGa~GlKiHEDwGatpa~id~~L~vad~~dvqv~iHtDtlNE~gfvedT~~a~~gRtiH~~H~EGaGGGHAPDii~~~~  160 (385)
T d1ejxc2          81 AAGVIGLKIHEDWGATPAAIDCALTVADEMDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACA  160 (385)
T ss_dssp             HHTCSEEEEEGGGCCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHHHHTTCCEEESSTTSTTSSSTTTGGGGGG
T ss_pred             HHHHCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHC
T ss_conf             71132144775235675899999876754183589760535400200214887579730332025677786631567624


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~nvlpsSTnPT~P~t~nt~~EhldMlmvcHhL~~~ipeDvafAesRiR~eTiaAEdvLhD~GaiSi~sSDsQaMGRvGE  240 (385)
T d1ejxc2         161 HPNILPSSTNPTLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSDSQAMGRVGE  240 (385)
T ss_dssp             CTTEEEEEESTTSSCBTTHHHHHHHHHHHC----------CHHHHHHSCHHHHHHHHHHHHTTSSCEEECCTTSSSCTTC
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHCCCEEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf             68535789998878866736764772332046898875677664233530123267776345743442153332576774


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 vi~RtwqtA~kmk~~rG~l~~d~~~~DN~RvkRYIAKYTINPAIahGIsh~VGMFGA~G~A~~~tSvtFVSqaAid~gi~  320 (385)
T d1ejxc2         241 VILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHEVGMFGALGSARHHCRLTFLSQAAAANGVA  320 (385)
T ss_dssp             HHHHHHHHHHHHHHHHCSCTTCCSSSCHHHHHHHHHHHTHHHHHHTTCTTTSSCGGGSHHHHHHHCEEEECHHHHHTTHH
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHCCCCCEECCCCCCCCCCCCCCEEEECHHHHHCCCH
T ss_conf             11020787999987603687777777624777666662368188768455135323456555457138856888867684


Q ss_pred             ----------------------------------------------------------------C
Q ss_conf             ----------------------------------------------------------------9
Q 003496          278 ----------------------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------------------~  278 (815)
                                                                                      -
T Consensus       321 ~~LgL~K~lvpVkn~R~ItK~DM~~Nda~P~IeVDPeTYeV~aDGelltcePA~~LPLAQRYFLF  385 (385)
T d1ejxc2         321 ERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDAQTYEVRVDGELITSEPADVLPMAQRYFLF  385 (385)
T ss_dssp             HHTTCCSEEEECCCTTTCCGGGSTTCCCCCCEEECTTTCCEEETTEECCCCCBSSCSSSTTTCCC
T ss_pred             HHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCEEEEECCEECCCCCCCCCCCHHCCCCC
T ss_conf             77388760686148887787786015789982789997689989999046765667631110176

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=100.00  E-value=0  Score=29036.65  Aligned_cols=1  Identities=0%  Similarity=-1.156  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~p~~~~~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~dw~~~t   80 (385)
T d1cf3a1           1 GIEASLLTDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYET   80 (385)
T ss_dssp             CHHHHSBCCGGGTTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCCTTSCHHHHBGGGTTTTTTSTTBCCEEC
T ss_pred             CCCHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf             96605218912126996889998968899999999987879829998889998787832048767755218978768605


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~r~~~~~~G~~lGGsS~in~~~~~R~~~~d~d~w~~~~~~~gw~~~~l~Pyf~k~E~~~~~~~~~~~~~~~~~~  160 (385)
T d1cf3a1          81 VELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNA  160 (385)
T ss_dssp             CCCTTTSCCCEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCG
T ss_pred             CCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             57677894365221002466512331353215866611210036878676336688999887610787311221122355


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~g~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~d~n~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~nl  240 (385)
T d1cf3a1         161 SCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNL  240 (385)
T ss_dssp             GGSCSSSSEEEBCCCCSSCBCTHHHHHHHHHHTTTCCBCCCTTSSCCCEEECCCBSBCTTCBBCCHHHHHTGGGTTCTTE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHCCCCC
T ss_conf             55677543334565545556878999999999769997677555665533223332322333223556533732107743


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~i~t~~~V~rI~~~~~~~~~ra~GV~~~~~~g~~~~v~A~keVILsAGAi~SP~LLl~SGIGp~~~L~~~gI~~~~dlP~  320 (385)
T d1cf3a1         241 QVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPV  320 (385)
T ss_dssp             EEEESCEEEEEEEECSSSSCEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTBSCHHHHGGGTCCCSBCCCT
T ss_pred             CCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEECCEEEECCCHHHCHHHHHHCCCCCHHHHHHCCCCEEEECCC
T ss_conf             33377368888871899654799999986899789999688899868535499999865998378998779986998974


Q ss_pred             ----------------------------------------------------------------C
Q ss_conf             ----------------------------------------------------------------9
Q 003496          278 ----------------------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------------------~  278 (815)
                                                                                      .
T Consensus       321 g~~~~~~~~~~~vv~~~~~v~g~~~lr~v~~s~~p~~~~~~~~~~~~~~a~~~~d~i~~~~~~~~  385 (385)
T d1cf3a1         321 GLCSMMPKEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDYASMQ  385 (385)
T ss_dssp             TCTCBSCGGGTCSBCTTSBBTTCBSEEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             04206887766614665542660571742575786212675148799985366789998775449

>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Cytochrome P450
superfamily: Cytochrome P450
family: Cytochrome P450
domain: Cyp175a1
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=0  Score=29035.55  Aligned_cols=1  Identities=0%  Similarity=-0.926  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~dp~~~~~~~~~kyg~v~~~~~~~p~v~v~dp~~v~~il~~~~~~~~~~~~~~~~~~~G~gl~   80 (385)
T d1n97a_           1 MKRLSLREAWPYLKDLQQDPLAVLLAWGRAHPRLFLPLPRFPLALIFDPEGVEGALLAEGTTKATFQYRALSRLTGRGLL   80 (385)
T ss_dssp             CEECCHHHHHHHHHHHHHCHHHHHHHHHHHCSEEEECCTTCCEEEECSHHHHHHHHHCTTEECCSHHHHHHHHHHCSSTT
T ss_pred             CCCCCCCCCCHHHHHHHHCHHHHHHHHHHHCCCEEEEECCEEEEEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCEE
T ss_conf             98888553538799987799999999999789789996998799989999999997289977688607779998579500


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~g~~wk~~R~~l~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~vdl~~~l~~~~~~vi~~~~fg~~~~~~~~~~~~~~  160 (385)
T d1n97a_          81 TDWGESWKEARKALKDPFLPKNVRGYREAMEEEARAFFGEWRGEERDLDHEMLALSLRLLGRALFGKPLSPSLAEHALKA  160 (385)
T ss_dssp             TCCHHHHHHHHHHHCGGGSHHHHHTTHHHHHHHHHHHHHTCCSCCEEHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             37979999999997234144432231025778999987650455335788888875520255553465432015666665


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ei~~~~~~~l~ag~dTt~~~l~~~l~~L~~~  240 (385)
T d1n97a_         161 LDRIMAQTRSPLALLDLAAEARFRKDRGALYREAEALIVHPPLSHLPRERALSEAVTLLVAGHETVASALTWSFLLLSHR  240 (385)
T ss_dssp             HHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHGGGTTSTTGGGSCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             56777777666665455899999986515678899887511104697889999999988765024211211025676541


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 P~v~~~l~~E~~~~~a~i~EtlRl~p~~~~~~r~~~~d~~~~g~~i~~g~~v~~~~~~~~~~~~~dp~~F~PeRf~~~~~  320 (385)
T d1n97a_         241 PDWQKRVAESEEAALAAFQEALRLYPPAWILTRRLERPLLLGEDRLPPGTTLVLSPYVTQRLHFPDGEAFRPERFLEERG  320 (385)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHSCSSCCEEEEESSCEEETTEEECTTCEEEECHHHHHHHSSTTTTSCCTTHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             02333333333332101201122333332212233322233333333333333332210011478876638432376567


Q ss_pred             ----------------------------------------------------------------C
Q ss_conf             ----------------------------------------------------------------9
Q 003496          278 ----------------------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------------------~  278 (815)
                                                                                      .
T Consensus       321 ~~~~~~lpFG~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~p~~~~~~r~r~  385 (385)
T d1n97a_         321 TPSGRYFPFGLGQRLCLGRDFALLEGPIVLRAFFRRFRLDPLPFPRVLAQVTLRPEGGLPARPRE  385 (385)
T ss_dssp             CCBTTBCTTCCSTTCCTTHHHHHHHHHHHHHHHHTTCBCCCCCCCCEEESSSEEETTCCEECCBC
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCEEEEECCCEEEEEEC
T ss_conf             88887067899765690399999999999999998378896898732460578646981788609

>d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: PepX catalytic domain-like
domain: Alpha-amino acid ester hydrolase
species: Acetobacter pasteurianus [TaxId: 438]

Probab=100.00  E-value=0  Score=29035.88  Aligned_cols=1  Identities=0%  Similarity=-1.290  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~ipmrDG~~L~~~v~~P~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~   80 (385)
T d2b9va2           1 HDPLSVQTGSDIPASVHMPTDQQRDYIKREVMVPMRDGVKLYTVIVIPKNARNAPILLTRTPYNAKGRANRVPNALTMRE   80 (385)
T ss_dssp             CCTTTCCCSCSCC---------CCSEEEEEEEEECTTSCEEEEEEEEETTCCSEEEEEEEESSCHHHHTCSSTTCSSHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             99754345777786665887667797686889989999889999997189996018999816788876556775322354


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~a~~Gy~vv~~d~RG~g~S~G~~~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~  160 (385)
T d2b9va2          81 VLPQGDDVFVEGGYIRVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGF  160 (385)
T ss_dssp             HSCGGGHHHHHTTCEEEEEECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHH
T ss_pred             CCCHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHH
T ss_conf             43057999996896899976774368898512045210011220155787799999999856674446410045667899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~a~~~~~~l~a~~~~~~~~d~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (385)
T d2b9va2         161 TVVMALLDPHPALKVAAPESPMVDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFAT  240 (385)
T ss_dssp             HHHHHHTSCCTTEEEEEEEEECCCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHH
T ss_pred             HHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCH
T ss_conf             99999854677634999812456532101234773011210899986541014586411114678889987252445320


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~p~~~~~~~~p~~d~~w~~~s~~~~~~~~~i~vP~l~~~g~~dd~~~~g~~~~~~~l~~~~~~~~~~LiiGPw~  320 (385)
T d2b9va2         241 QAGLDQYPFWQRMHAHPAYDAFWQGQALDKILAQRKPTVPMLWEQGLWDQEDMWGAIHAWQALKDADVKAPNTLVMGPWR  320 (385)
T ss_dssp             HTTGGGCHHHHHHHHCCSSSHHHHTTCHHHHHHHHCCCSCEEEEEETTCSSCSSHHHHHHHHHHHTTCSSCEEEEEESCC
T ss_pred             HCCCCHHHHHHHHCCCCCCCHHHHHCCHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf             10442134566530376543122315846888633556762899841368765433789999875156888579993776


Q ss_pred             ----------------------------------------------------------------C
Q ss_conf             ----------------------------------------------------------------9
Q 003496          278 ----------------------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------------------~  278 (815)
                                                                                      -
T Consensus       321 H~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~WFD~~LKG~~~~~~~p~v~~~~~G~~~Wr~~~~W  385 (385)
T d2b9va2         321 HSGVNYNGSTLGPLEFEGDTAHQYRRDVFRPFFDEYLKPGSASVHLPDAIIYNTGDQKWDYYRSW  385 (385)
T ss_dssp             TTGGGSCCSEETTEECSSCHHHHHHHHTHHHHHHHHHSTTCCCCCCCSEEEEETTTTEEEEESSS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEECCCC
T ss_conf             77866566666664567520013689999999999708999999999879998789827418979

>d2c5wb1 e.3.1.1 (B:266-650) Penicillin-binding protein 1a, transpeptidase domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: Penicillin-binding protein 1a, transpeptidase domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=100.00  E-value=0  Score=29034.52  Aligned_cols=1  Identities=0%  Similarity=-0.693  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~yp~~~d~~~~e~i~~~~~~~~~~~~~~G~~I~tTiD~~lQ~~~e~~~~~~~~~~~~~~~~~~a~vv~d~~TG~IlA~v   80 (385)
T d2c5wb1           1 SNYPAYMDNYLKEVINQVEEETGYNLLTTGMDVYTNVDQEAQKHLWDIYNTDEYVAYPDDELQVASTIVDVSNGKVIAQL   80 (385)
T ss_dssp             CCSCGGGHHHHHHHHHHHHHHHSCCTTTSCEEEEECCCHHHHHHHHHHHHCSSSCCCSCSSCEEEEEEEETTTCBEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEE
T ss_conf             99748999999999998777644232069987994789999999999997534312678663289999988999399999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~N~a~~~~~~pGStfKp~~~yaaAle~g~~~~~~~~~~d~~~~~~~~~~~~~n~~~~~~G~itl~~al  160 (385)
T d2c5wb1          81 GARHQSSNVSFGINQAVETNRDWGSTMKPITDYAPALEYGVYESTATIVHDEPYNYPGTNTPVYNWDRGYFGNITLQYAL  160 (385)
T ss_dssp             CCSSCCCCCTTCCCTTTCCCSCCGGGHHHHHTHHHHHHTTSCSBSSCEEEESSCBCTTSSCBCCCTTSCCCEEEEHHHHH
T ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHH
T ss_conf             55655544434543201143467740447899999986497002331123454211136866422465565136650333


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~S~N~~~~~l~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~tplqla~aya~iAngG~~~~P~~i~~i  240 (385)
T d2c5wb1         161 QQSRNVPAVETLNKVGLNRAKTFLNGLGIDYPSIHYSNAISSNTTESDKKYGASSEKMAAAYAAFANGGTYYKPMYIHKV  240 (385)
T ss_dssp             HTTCHHHHHHHHHHHCHHHHHHHHHTTTCBCSSCCGGGGSCCCCSSCCSSBSCCHHHHHHHHHHHHTTSEEECCBSEEEE
T ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf             31655300345666403368999997087545653223445441135885256899999988765147643221430122


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~d~~~~~~~~~~~~~~v~s~~~a~~~~~~m~~vv~~GT~~~a~~~~~~vaGKTGTaq~~~~~~~~~~~~~~~~~~d~WFv  320 (385)
T d2c5wb1         241 VFSDGSEKEFSNVGTRAMKETTAYMMTDMMKTVLTYGTGRNAYLAWLPQAGKTGTSNYTDEEIENHIKTSQFVAPDELFA  320 (385)
T ss_dssp             EETTSCEEECCCCEEECSCHHHHHHHHHHHHHHHHHSTTGGGCCTTCCCEEEEEECCCCHHHHHHTCCCSSCEESCEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             12344422123455420477888888764110135775221356565313565565666665444435564222205999


Q ss_pred             ----------------------------------------------------------------C
Q ss_conf             ----------------------------------------------------------------9
Q 003496          278 ----------------------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------------------~  278 (815)
                                                                                      .
T Consensus       321 G~~P~~~~~Vwvg~~~~~~~~~~~G~~~Aapi~~~im~~~~~~~~~~~f~~P~gi~~~g~~~~~~  385 (385)
T d2c5wb1         321 GYTRKYSMAVWTGYSNRLTPLVGNGLTVAAKVYRSMMTYLSEGSNPEDWNIPEGLYRNGEFVFKN  385 (385)
T ss_dssp             EECSSEEEEEEEECSSTTSCEEGGGGGHHHHHHHHHHHHHHSSSCCCCCCCCTTEEEETTEEEEC
T ss_pred             ECCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCEEEECC
T ss_conf             55998899999940788887688722889999999999997269977799999867767089529

>d2ix0a4 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: RNB domain-like
domain: Exoribonuclease 2, RNB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=29042.13  Aligned_cols=1  Identities=0%  Similarity=-1.556  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 e~~~~~~~~~~~~~~~R~Dl~~l~~~tID~~~a~d~DDAisie~~~~~~~~l~VHIADva~~v~~~s~Ld~~A~~R~~S~   80 (385)
T d2ix0a4           1 EAPDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTN   80 (385)
T ss_dssp             SCCCCCCCCCCCCCCCCEECTTSCCBEEECSSCCCCCEEEEEEEEGGGEEEEEEEECCGGGTSCTTSHHHHHHHHHCBCE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCHHHHHCCCCHHHHHHHHHCCCE
T ss_conf             99875431001467874208899989976999942665589999689919999998777887598999999999968838


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 Ylp~~~~pMLP~~ls~~~~SL~~~~~r~a~s~~~~l~~~g~i~~~~~~~~s~I~s~~~ltY~~v~~~l~~~~~~~~~~~~  160 (385)
T d2ix0a4          81 YLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEA  160 (385)
T ss_dssp             EETTEEECSSCHHHHHTTSSCCTTCEEEEEEEEEEECTTCCBCSCCEEEEEEEECCCEEEHHHHHHHHTTCSSCCCSSHH
T ss_pred             ECCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEEEEECCCCCEECCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHH
T ss_conf             89999778898166420014566532047778999856761401336876789726757499999997403334532022


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~l~~L~~~~~~lr~~R~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~lieE~MilaN~~va~~l~~~~~~~i  240 (385)
T d2ix0a4         161 IAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI  240 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCCCCCCCEEEEEECTTSCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             59999999999999999874167621343022010244455413787404088888888887766899999997348873


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~R~~~~p~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~a~ys~~~~~H~gLgl~~Y  320 (385)
T d2ix0a4         241 YNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAY  320 (385)
T ss_dssp             EEEBCCSCGGGHHHHHHHHHHTTCCCCTTGGGSHHHHHHHHHHHHHSSSSHHHHHTGGGCCCCEEESSCCCBTTTTBSCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
T ss_conf             22222357477899999999710366855334625677776520355416789999998643103798877413084612


Q ss_pred             ----------------------------------------------------------------C
Q ss_conf             ----------------------------------------------------------------9
Q 003496          278 ----------------------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------------------~  278 (815)
                                                                                      .
T Consensus       321 thfTSPIRRY~DLivhrqL~a~L~~~~~~~~~~ei~~~~~~~~~~a~~aer~~~~~~~~~~lk~~  385 (385)
T d2ix0a4         321 ATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDK  385 (385)
T ss_dssp             BCCSCTTTBHHHHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             EEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             01586776377899999999997699999889999999999999999999999999999985789

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=28968.49  Aligned_cols=1  Identities=0%  Similarity=-1.822  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~k~~T~~vh~G~~~~~~~gav~pPI~~sst~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEgg~~a~~~sSGMaAi~~   80 (384)
T d1cs1a_           1 RKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHL   80 (384)
T ss_dssp             CCHHHHHHHTTTTCCTTTCBSSCCBCCCSBBCCSBTTBCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHH
T ss_pred             CCHHHHEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf             97404214689898888998259844888746089776568743189887899999999998299706884372799999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~d~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~i~~i  160 (384)
T d1cs1a_          81 VTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHL  160 (384)
T ss_dssp             HHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHH
T ss_pred             HHHHCCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCEECCHHHHHHH
T ss_conf             98631445550013465200246665421122333222356788799986216666279971456653010457887554


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 a~~~g~~~vVDNT~atP~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~  240 (384)
T d1cs1a_         161 AREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLL  240 (384)
T ss_dssp             HHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHH
T ss_pred             HHHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             54148679971553474546664468889998063003667774443345782665420011221122024500389996


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 rgL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~~~a~~f~~~L~l~~  320 (384)
T d1cs1a_         241 RGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFT  320 (384)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSE
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCCE
T ss_conf             12111478998999999999996445886446641223301489998750689861268752466999999998389155


Q ss_pred             ---------------------------------------------------------------C
Q ss_conf             ---------------------------------------------------------------9
Q 003496          278 ---------------------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------------------~  278 (815)
                                                                                     .
T Consensus       321 ~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlEd~eDLi~Dl~~AL~aa~~g  384 (384)
T d1cs1a_         321 LAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAANKG  384 (384)
T ss_dssp             EBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHTCC
T ss_pred             ECCCCCCCCCEECCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC
T ss_conf             5626687540430661015100799999866989296999865099999999999999986079

>d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylococcus capsulatus [TaxId: 414]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Methane monooxygenase hydrolase beta subunit
species: Methylococcus capsulatus [TaxId: 414]

Probab=100.00  E-value=0  Score=28966.98  Aligned_cols=1  Identities=0%  Similarity=-1.556  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~a~~~~~~~~~r~~~~~~~p~~rr~seYE~vT~~~qp~p~~~~~~~~~~~W~~~~~~g~p~y~~   80 (384)
T d1mtyb_           1 ERRRGLTDPEMAAVILKALPEAPLDGNNKMGYFVTPRWKRLTEYEALTVYAQPNADWIAGGLDWGDWTQKFHGGRPSWGN   80 (384)
T ss_dssp             CCCCTTTCHHHHHHHHHHCCSSCSCSCCCTTTTSCCSSSSCCHHHHHHTTCSCCBTTSTTCCBCSCCSSCCTTCCCSSCG
T ss_pred             CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCCCCHHHCCCCCCCCCEEEECCCCCCCCCC
T ss_conf             98667998778899861277886667776424467577896643510227889956617767647764613899998886


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~Tal~~~DW~~frDP~q~~yrtY~~~qae~e~~v~~~~d~~~~~~~~~~l~~~w~~~~L~~~l~p~r~~E~ga~~~~a~  160 (384)
T d1mtyb_          81 ETTELRTVDWFKHRDPLRRWHAPYVKDKAEEWRYTDRFLQGYSADGQIRAMNPTWRDEFINRYWGAFLFNEYGLFNAHSQ  160 (384)
T ss_dssp             GGCSCCCSCTTCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGSCHHHHHTTTTTHHHHHHHHHHHHHHTTHH
T ss_pred             CCCEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             64313447746535801889999999999999999999999996696211999999999999860240799999987899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 i~r~~~g~~i~~a~~fqa~DeLR~aQ~i~~~~~~L~~~~pgf~~~~~~~k~~W~~dp~wQg~R~~vE~~l~~~~Dw~E~~  240 (384)
T d1mtyb_         161 GAREALSDVTRVSLAFWGFDKIDIAQMIQLERGFLAKIVPGFDESTAVPKAEWTNGEVYKSARLAVEGLWQEVFDWNESA  240 (384)
T ss_dssp             HHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHHHHCSTTHHHHHHHHHHHHTCCCHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             98646868999999998766888999999999999874789862337998886048065779999998987114499999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 vA~Nlv~dpll~~L~~~~f~~~~Aa~nGD~~t~~l~~s~q~D~~Rh~~~~~alvk~~l~~dpe~~~~Nr~llq~Wi~~W~  320 (384)
T d1mtyb_         241 FSVHAVYDALFGQFVRREFFQRLAPRFGDNLTPFFINQAQTYFQIAKQGVQDLYYNCLGDDPEFSDYNRTVMRNWTGKWL  320 (384)
T ss_dssp             HHHHHTHHHHHHHHHHHTTHHHHGGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf             99876488644899999999999997698047999999998999999899999999984585332668999999999999


Q ss_pred             ---------------------------------------------------------------C
Q ss_conf             ---------------------------------------------------------------9
Q 003496          278 ---------------------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------------------~  278 (815)
                                                                                     .
T Consensus       321 ~~a~~Al~~~~pi~s~~p~~~~~~~~~~a~~~rv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (384)
T d1mtyb_         321 EPTIAALRDFMGLFAKLPAGTTDKEEITASLYRVVDDWIEDYASRIDFKADRDQIVKAVLAGLK  384 (384)
T ss_dssp             HHHHHHHHHHGGGGGGSCTTSCCHHHHHHHHHHHHHHHHHHTGGGGTCCCCHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             9999999987687610677878889999999999987653024103665458899999972369

>d3c0na2 f.8.1.1 (A:85-468) (Pro)aerolysin, pore-forming lobe {Aeromonas hydrophila [TaxId: 644]}

class: Membrane and cell surface proteins and peptides
fold: Aerolisin/ETX pore-forming domain
superfamily: Aerolisin/ETX pore-forming domain
family: (Pro)aerolysin, pore-forming lobe
domain: (Pro)aerolysin, pore-forming lobe
species: Aeromonas hydrophila [TaxId: 644]

Probab=100.00  E-value=0  Score=28966.95  Aligned_cols=1  Identities=0%  Similarity=-0.327  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ip~~~~~~~~~~d~~~~~~~~v~~~~~fi~pls~LAh~LGY~W~gg~~~q~Vged~~~~r~gd~w~~~~~n~g~c~gyrc   80 (384)
T d3c0na2           1 IPTLSALDIPDGDEVDVQWRLVHDSANFIKPTSYLAHYLGYAWVGGNHSQYVGEDMDVTRDGDGWVIRGNNDGGCDGYRC   80 (384)
T ss_dssp             CCCCCCEEECSCCHHHHHHHHHTCTTTTHHHHHHHHHHHTBSCCSCTTCSSTTCSEEEEECSSSEEEEECCCSCCCSTTT
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCEEECCCCCCEECCCCEEEECCCEEEEECCCCCCCCCEEE
T ss_conf             98654411389987887888762870011569999865073677677874114452566438767996256899774451


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~er~ki~~~nf~~~i~~~~f~~G~~~v~~~epi~t~s~~a~N~sDt~qt~itvt~~~t~T~TWSkT~s~~~s~sV~ik~s  160 (384)
T d3c0na2          81 GDKTAIKVSNFAYNLDPDSFKHGDVTQSDRQLVKTVVGWAVNDSDTPQSGYDVTLRGDTATNWSKTNTYGLSEKVTTKNK  160 (384)
T ss_dssp             TSCCEEEEEEEEEEEEEEEEEECCCSEEEEEEEEEEEEEEEECSSSCBCCEEEEEEEEEEEEEEECCSSSGGGTCBCSSC
T ss_pred             CCCCEEEEEEEEEEECCCCEECCCCEEECCCEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
T ss_conf             56215898756778657644427818844542899999997389886158899999998423898654778889999888


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 f~iPligeteisvs~S~n~s~s~s~t~S~T~T~t~s~~VtVPP~Skv~V~i~l~rs~idVPYt~t~~I~Ydv~~~gFLRw  240 (384)
T d3c0na2         161 FKWPLVGETELSIEIAANQSWASQNGGSTTTSLSQSVRPTVPARSKIPVKIELYKADISYPYEFKADVSYDLTLSGFLRW  240 (384)
T ss_dssp             EECCCCSSSCCCCEECTTSCGGGCCEEEEEEEECCEECCCBCTTEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEBCT
T ss_pred             EECCEEEEEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEC
T ss_conf             85663514469999976788850675137899888876301898359999999866873556899999998987116741


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 gGNa~~~hp~~Rpt~~~tf~~g~~~~~~~~i~yq~d~r~ipg~~~~wdW~w~~~~~g~~~m~~~~~~~~R~~~s~isG~f  320 (384)
T d3c0na2         241 GGNAWYTHPDNRPNWNHTFVIGPYKDKASSIRYQWDKRYIPGEVKWWDWNWTIQQNGLSTMQNNLARVLRPVRAGITGDF  320 (384)
T ss_dssp             TCCCBTTCCSSCCEEEEEEEESSCCCSTTCHHHHHHTTTCGGGCSSBCHHHHHHHHCHHHHHHHHHHHTCCEEEEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf             56213448988886426886057888743411243202357876511364155553567777777664222346434217


Q ss_pred             ---------------------------------------------------------------C
Q ss_conf             ---------------------------------------------------------------9
Q 003496          278 ---------------------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------------------~  278 (815)
                                                                                     .
T Consensus       321 ~a~sq~~g~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~  384 (384)
T d3c0na2         321 SAESQFAGNIEIGAPVPLAADSKVRRARSVDGAGQGLRLEIPLDAQELSGLGFNNVSLSVTPAA  384 (384)
T ss_dssp             EEEEEEECCCEECCCEEC-----------------CCEEECCCCHHHHHHHTCEEEEEEEEECC
T ss_pred             EEEECCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCHHHHHHCCCCCEEEEEEECC
T ss_conf             8850211015524711158068642346664467863897347977886367674389976389

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=100.00  E-value=0  Score=28961.32  Aligned_cols=1  Identities=0%  Similarity=-0.891  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~g~~v~~fE~~~a~~~g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p   80 (384)
T d1b9ha_           1 KAPEFPAWPQYDDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVP   80 (384)
T ss_dssp             CCCCCCCSSCCCHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             98989898887999999999999739946568989999999999997969399967889999999998499988989981


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~t~~a~~~ai~~~g~~p~~~d~~~~~~~~d~~~~~~~i~~~tk~i~~~~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~  160 (384)
T d1b9ha_          81 AFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIMPVHMAGLMADMDALAKISADTGVPLLQDAAHAH  160 (384)
T ss_dssp             SSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEEC
T ss_conf             43223221222222233211233444435665441020023332222333322233443110222333356553104033


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ga~~~g~~~g~~g~~~~~Sf~~~K~i~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aai  240 (384)
T d1b9ha_         161 GARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASV  240 (384)
T ss_dssp             TCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHH
T ss_pred             CCCCCCEECCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             60048983675520000024555434433431243224999998899985689876666432312356632235301213


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 g~~qL~~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~GI~~~~~y~  320 (384)
T d1b9ha_         241 LRAQLARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFR  320 (384)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCC
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf             33343211321123433446666664225666443222222222333310001000222599999999987998553072


Q ss_pred             ---------------------------------------------------------------C
Q ss_conf             ---------------------------------------------------------------9
Q 003496          278 ---------------------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------------------~  278 (815)
                                                                                     .
T Consensus       321 plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~~~  384 (384)
T d1b9ha_         321 AIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVARA  384 (384)
T ss_dssp             CGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             CHHCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHCEEECCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             2213978885488744433344679899999839798647999998999999999999999609

>d1hn0a1 a.102.3.2 (A:235-618) Chondroitin ABC lyase I {Proteus vulgaris [TaxId: 585]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Chondroitin AC/alginate lyase
family: Hyaluronate lyase-like catalytic, N-terminal domain
domain: Chondroitin ABC lyase I
species: Proteus vulgaris [TaxId: 585]

Probab=100.00  E-value=0  Score=28959.32  Aligned_cols=1  Identities=0%  Similarity=-0.394  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~p~~~~T~~~~~~~d~ir~R~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ng~~~g~pi~~~~~~   80 (384)
T d1hn0a1           1 EPEIQFHNVKPQLPVTPENLAAIDLIRQRLINEFVGGEKETNLALEENISKLKSDFDALNIHTLANGGTQGRHLITDKQI   80 (384)
T ss_dssp             CCCCCCCCCSSCCCCCHHHHHHHHHHHHHHHHHHHSSCCCTTCCCCCCHHHHHHHHHTTCCEECTTSCEECCCEECTTGG
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
T ss_conf             98777677899888896788899999999999872688652157777899999999985686456874247755562012


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~aY~~~g~~~~~~el~~~i~~~~d~l~dQg~~~gS~~~~~nww~~~i  160 (384)
T d1hn0a1          81 IIYQPENLNSQDKQLFDNYVILGNYTTLMFNISRAYVLEKDPTQKAQLKQMYLLMTKHLLDQGFVKGSALVTTHHWGYSS  160 (384)
T ss_dssp             GGGCGGGSCHHHHHHHTTSEEHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHTTCSTTCCCSCCTTHHHHH
T ss_pred             HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCEECCCCCCCCCHHHHHH
T ss_conf             20577676533344431266899999999999999747887322399999999999999872320378777673112238


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 r~~~~a~~Lm~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~D~~~t~~~~~l~~~Ll~~d~~e~i~~l~~l~  240 (384)
T d1hn0a1         161 RWWYISTLLMSDALKEANLQTQVYDSLLWYSREFKSSFDMKVSADSSDLDYFNTLSRQHLALLLLEPDDQKRINLVNTFS  240 (384)
T ss_dssp             HHHHHHHHHTHHHHHHTTCHHHHHHHHHHHGGGGHHHHTCCCCTTTTCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             77988999987753226789999999987446864245676677850378999999999999985599199999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~l~~~~~~vt~G~~dGfk~DGS~~qH~~~Y~gYg~~~l~~~~~~~~ll~gT~f~~~~~~~~~l~~~l~~~~~~~~~~~~  320 (384)
T d1hn0a1         241 HYITGALTQVPPGGKDGLRPDGTAWRHEGNYPGYSFPAFKNASQLIYLLRDTPFSVGESGWNNLKKAMVSAWIYSNPEVG  320 (384)
T ss_dssp             HHHHHHHHSCCSTTCSEECTTSCEEETTEECHHHHHHHHHHHHHHHHHHTTSTTCCCHHHHHHHHHHHHHHHHTBSSBBC
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99887750478887886457887550678774269999999999999967998767989999999999999998454466


Q ss_pred             ---------------------------------------------------------------C
Q ss_conf             ---------------------------------------------------------------9
Q 003496          278 ---------------------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------------------~  278 (815)
                                                                                     -
T Consensus       321 ~~~~GR~p~~~~~~~~~~~a~~~~al~g~~~~D~~~A~~ylrl~~~~~~~~~~~~~~~~~pa~~  384 (384)
T d1hn0a1         321 LPLAGRHPFNSPSLKSVAQGYYWLAMSAKSSPDKTLASIYLAISDKTQNESTAIFGETITPASL  384 (384)
T ss_dssp             GGGCTTCTTSCCBGGGGHHHHHHHHTTSTTSCCHHHHHHHHHHHTCCHHHHHHHHSSCCCCCCC
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCC
T ss_conf             5555777899875543189999997078866799999999987347785416676158787879

>d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: Dihydropyrimidine amidohydrolase Pyd2
species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]

Probab=100.00  E-value=0  Score=28958.79  Aligned_cols=1  Identities=0%  Similarity=-0.990  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 G~ID~HvH~rePg~~~~~~~ed~~tgs~AAa~GGvTtvi~mp~~~p~~~~~~~~~~~~~~~~~~~a~~~~~vdy~~~~~~   80 (384)
T d2fvka2           1 GGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQTLYCDYGLHLIL   80 (384)
T ss_dssp             CEEECCBCCCCTTCTTSCCSCCHHHHHHHHHHTTEEEEEEEEECCTTCCSTTHHHHHHHHHHHHHTTSCCSSEEEEEEEC
T ss_pred             CCEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf             92538757788999987610329999999980895599989999999997899999999999999734850206578987


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~el~~~~~~~~~~~~Gv~~~k~f~~~~~~~~~~~~l~~~l~~~~~~g~~v~~H~Ed~~~~~~~~~~~~~~  160 (384)
T d2fvka2          81 FQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPGLQISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEEQ  160 (384)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHHCCCEEEEESSSTTTBCCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHT
T ss_pred             ECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHC
T ss_conf             57787661277877678888705575441213325522344779999999999754982451322078898887777655


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 g~~~~~~~~~~rP~~aE~~av~r~~~la~~~g~~lhi~HiSt~~~ve~I~~ak~~G~~Vt~Et~ph~L~l~~~~~~~~~~  240 (384)
T d2fvka2         161 GLTDAYYHGVSRPSIVEGEATNRAITLATTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHHH  240 (384)
T ss_dssp             TCCSTTHHHHTSCHHHHHHHHHHHHHHHHHTTCCEEECSCCCHHHHHHHHHHHHHTCCEEEEECHHHHHCCGGGGSCC--
T ss_pred             CCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHHHHCCCHHHCCCCC
T ss_conf             98774332454453213678999999887519607722335612367899853049978998376776146301024442


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~k~~PPLR~~~dr~aL~~~l~dG~Id~IaSDHaP~~~~eK~~~~~~~~~  320 (384)
T d2fvka2         241 GEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDHCSYNYYEKTSTASKHRA  320 (384)
T ss_dssp             ------CCSCCGGGSSSSTTTCTTCTTGGGGGCCSSCCCCTTSHHHHHHHHHHTSCSEECCCBCCCBSSCCSSTTBGGGG
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCCCCCCCC
T ss_conf             22111223333222122223554310137516976999987789999977447964279627888788883355333333


Q ss_pred             ---------------------------------------------------------------C
Q ss_conf             ---------------------------------------------------------------9
Q 003496          278 ---------------------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------------------~  278 (815)
                                                                                     .
T Consensus       321 ~~~~~~~~~df~~ap~G~~gle~~lpll~~~~v~~~~~~sl~~lv~~~s~nPAki~Gl~p~KGs  384 (384)
T d2fvka2         321 FDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGS  384 (384)
T ss_dssp             EEGGGTEESCGGGSCCCBCCTTTHHHHHHHHTTTTTSSSCHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             3433345676310999974599899999999986489899999999996999999499998998

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=0  Score=28960.63  Aligned_cols=1  Identities=0%  Similarity=-0.461  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~pi~~~f~D~~l~~~~~~~l~~~~~~~~~~~~~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~   80 (384)
T d2omza2           1 LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD   80 (384)
T ss_dssp             CSCCCCSSCEEHHHHSCSHHHHHHHHHHTTCSSTTSEECHHHHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCC
T ss_conf             97652589998331320889999999986777778863988957878998999898776242458999989681881798


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 l~~l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  160 (384)
T d2omza2          81 ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS  160 (384)
T ss_dssp             CGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             86334771101030134333222211123343334433222222222222222211213466313100232222112222


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l  240 (384)
T d2omza2         161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL  240 (384)
T ss_dssp             EEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGC
T ss_pred             CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHCC
T ss_conf             21232201111245421101122243332110022353233303577447878644457787888877777896134325


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~  320 (384)
T d2omza2         241 TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS  320 (384)
T ss_dssp             TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCS
T ss_pred             CCCCHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEECCCCCCC
T ss_conf             65341004467447877535546687754567445787732356522223323233333221000024676777788778


Q ss_pred             ---------------------------------------------------------------C
Q ss_conf             ---------------------------------------------------------------9
Q 003496          278 ---------------------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------------------~  278 (815)
                                                                                     .
T Consensus       321 ~l~~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         321 DISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA  384 (384)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCCEE
T ss_pred             CCCCCCCCCCCCEEECCCCCCCCCHHHCCCCCCCEEECCCCCCCCCHHHCCCCCCCEEECCCCC
T ss_conf             9845366898898989899899974670899999898979958998000039999996397895

>d1vz6a_ d.154.1.2 (A:) Glutamate N-acetyltransferase 2 (ornithine acetyltransferase) {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a+b)
fold: DmpA/ArgJ-like
superfamily: DmpA/ArgJ-like
family: ArgJ-like
domain: Glutamate N-acetyltransferase 2 (ornithine acetyltransferase)
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=100.00  E-value=0  Score=28891.67  Aligned_cols=1  Identities=0%  Similarity=-0.792  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 sPkGf~~~~~~aGiK~~~r~DL~li~~~~~~~~AgvFT~N~~~AApV~~~r~~l~~~~~ravvvNSGnANA~TG~~G~~~   80 (383)
T d1vz6a_           1 TPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEEN   80 (383)
T ss_dssp             CCTTEEEEEECCCSSTTCCCCEEEEEESSCCEEEEEECCCTTCCHHHHHHHHHTTTSBCCEEEEEEEECCCSCHHHHHHH
T ss_pred             CCCCEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCEECCCHHHHHHHCCCCCEEEEEECCCHHHHCCHHHHHH
T ss_conf             99859999999536679998689999579976999973687530151998987526884299995374111115888999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 a~~~~~~~A~~l~i~~~~Vl~aSTGVIG~~Lp~~kI~~~i~~l~~~l~~~~~~~AA~AImTTDt~pK~~~i~~~~~~i~G  160 (383)
T d1vz6a_          81 AREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVRVSVGGATLVG  160 (383)
T ss_dssp             HHHHHHHHHHHHTCCGGGEEEEEEEESSCCCCHHHHHHHHTTCCCCSSSBCHHHHHHHTCSSCSSCEEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEEEEECCCEEEE
T ss_conf             99999876553045753145512420101464113344332112232343366544453066420258999720424777


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 iaKGsGMI~PnMATML~fi~TDa~i~~~~L~~~l~~~v~~sFN~ItVDGDtSTNDtv~~lAnG~~~~~~~~~f~~aL~~v  240 (383)
T d1vz6a_         161 IAKGVGMLEPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAGEFEEALHTA  240 (383)
T ss_dssp             EEECSSSCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHTGGGBCSSSCCCSSCEEEEEEEEEEEECCHHHHHHHHHHH
T ss_pred             EEECCHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             86014320555452478999615567688999999864145000654588887758999845875321078777778899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~LA~~Iv~DGEGATK~i~v~V~gA~s~~dA~~iAr~ia~S~LVKtA~~G~DpNWGRI~aAiG~~~~~~~~d~~~i~i~  320 (383)
T d1vz6a_         241 ALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAMAIGKCSDDTDIDQERVTIR  320 (383)
T ss_dssp             HHHHHHHHHHTCTTCSSEEEEEEEEESSHHHHHHHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHTCTTCTTCCTTTCEEE
T ss_pred             HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHEEEE
T ss_conf             99999998636533225899998058999999999999752299998873458847777766423567766662425999


Q ss_pred             --------------------------------------------------------------C
Q ss_conf             --------------------------------------------------------------9
Q 003496          278 --------------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------------~  278 (815)
                                                                                    .
T Consensus       321 ~~~~~v~~~g~~~~~~~~~~~~~~~~~m~~~ei~I~vdL~~G~~~~~~wtcDLt~~YV~INad  383 (383)
T d1vz6a_         321 FGEVEVYPPKARGDQADDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSE  383 (383)
T ss_dssp             ETTEEEECC-------CHHHHHHHHHHTTSSEEEEEEECCSSSEEEEEEEECCCHHHHHHHHC
T ss_pred             ECCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEECCCCCCHHCCCCC
T ss_conf             899999963667887733559999987457848999997888922899907698322102689

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=28889.18  Aligned_cols=1  Identities=0%  Similarity=-1.058  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~g~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g   80 (383)
T d1bs0a_           1 SWQEKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSG   80 (383)
T ss_dssp             CHHHHHHHHHHHCCGGGCCCCCCCCSBCSSSEEEETTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTC
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             95799999999999819971112457888876998996899987653026678989999999999983898876553467


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~lE~~LA~~~g~e~al~~~SG~~an~~~i~al~~~~d~v~~d~~~h~si~~g~~~~~~~~~~~~hnd~~~le~~  160 (383)
T d1bs0a_          81 YSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARL  160 (383)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCCCEEECCHHHHHHHHH
T ss_conf             40689999999987519983588604422467778760699866885045528776342357875257340578899998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 l~~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~~  240 (383)
T d1bs0a_         161 LASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVS  240 (383)
T ss_dssp             HHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSC
T ss_pred             HCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             41457774499965787877723315679999886491998303123210377664558771774211245212233465


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 Gg~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~~~~s~Ii  320 (383)
T d1bs0a_         241 GAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADSCSAIQ  320 (383)
T ss_dssp             CEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECSCCSSBC
T ss_pred             CCCCCCCHHHHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf             54200321677899860446664244320689999999999985025788888888899998788755986579998879


Q ss_pred             --------------------------------------------------------------C
Q ss_conf             --------------------------------------------------------------9
Q 003496          278 --------------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------------~  278 (815)
                                                                                    .
T Consensus       321 ~v~~g~~~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~g  383 (383)
T d1bs0a_         321 PLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG  383 (383)
T ss_dssp             CEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHHC
T ss_pred             EEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf             999799999999999999789149897489789998459998677799999999999998649

>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=28888.57  Aligned_cols=1  Identities=100%  Similarity=1.300  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~d~~d~~~~l~~~~lV~~m~~~Gf~lle~G~vr~kn~~~~~~k~~~~~~~~~i~~~~~Gy~lafg~~~~~~g~~~~~~   80 (383)
T d1u7ga_           1 AVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEGNNFFGNINWLM   80 (383)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSCSSSCCCSTTGG
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCHHH
T ss_conf             97576459999999999999999999998611144889999999999999999886034867868489988677750542


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~~~~~~vy~~~~hwvw~~g~l~~lG~~Dfa  160 (383)
T d1u7ga_          81 LKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFA  160 (383)
T ss_dssp             GTTCCTTCEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHHHHHSSCHHHHHTCCCSS
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHCCCHHHHEECCCCCCCCCCCEECC
T ss_conf             15765321222211567757633133310231103334665026753045676502156587420488753357863016


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 Gs~vVH~~gG~~aL~~~~~lgpR~~~~~~~~~~~~~~~~~lG~~iLw~gW~gFN~gs~~~~~~~~~~~~~nt~~a~a~~~  240 (383)
T d1u7ga_         161 GGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAI  240 (383)
T ss_dssp             CTTTTHHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             74366404209899888753875445656565678146667899999999873445435520588999998776788999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~k~~~~~~~nG~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~vHg~~G  320 (383)
T d1u7ga_         241 LGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCG  320 (383)
T ss_dssp             HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEHHHHH
T ss_conf             99999998735987799999886545540246755346156899886210778899999986601366465670321368


Q ss_pred             --------------------------------------------------------------C
Q ss_conf             --------------------------------------------------------------9
Q 003496          278 --------------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------------~  278 (815)
                                                                                    -
T Consensus       321 i~G~l~~glfa~~~~~g~~~~~~~~~~~ql~~Ql~g~~v~~~~~~~~~~ii~~il~~~~gLRV  383 (383)
T d1u7ga_         321 IVGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRV  383 (383)
T ss_dssp             HHHHHHHHHHTSGGGTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBC
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             999988998267444665654541268999999999999999999999999999984728769

>d1mhyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylosinus trichosporium [TaxId: 426]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Methane monooxygenase hydrolase beta subunit
species: Methylosinus trichosporium [TaxId: 426]

Probab=100.00  E-value=0  Score=28888.36  Aligned_cols=1  Identities=0%  Similarity=-1.291  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~p~~~~~~~r~~~~f~~p~~rr~seYE~vt~~~Qp~p~~~~~~~~~~~W~~~f~~G~~~y~~~~   80 (383)
T d1mhyb_           1 KRGLTDPERAAIIAAAVPDHALDTQRKYHYFIQPRWKPLSEYEQLSCYAQPNPDWIAGGLDWGDWTQKFHGGRPSWGNES   80 (383)
T ss_dssp             CCTTTCHHHHHHHHHHSCSSCSCCCCSTTTTSCCSSSSCCHHHHHHTTCSCCBTTSTTCCBCSCCSSCCTTCCCSSCGGG
T ss_pred             CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHCCCCCCCCCCEEECCCCCCCCCCC
T ss_conf             99999745888998616788666677656657868789554444202677985651355654783042079999987553


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 Tai~~~DW~afrDP~q~~yr~Yv~~qaeqe~~v~~~~d~~~~~~~~~~l~p~w~~~~L~~~l~p~r~~E~ga~m~~a~i~  160 (383)
T d1mhyb_          81 TELRTTDWYRHRDPARRWHHPYVKDKSEEARYTQRFLAAYSSEGSIRTIDPYWRDEILNKYFGALLYSEYGLFNAHSSVG  160 (383)
T ss_dssp             CSCCCSCTTCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGSCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             00143663654580088899999989999999999999999669620089999999999986131089999998889998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 r~a~~~~i~n~~~fqa~DeLR~aQ~l~~~~~~L~~~~~gf~~~~~~~k~~W~~dp~WQ~~R~~vE~~lva~~Dw~E~~vA  240 (383)
T d1mhyb_         161 RDCLSDTIRQTAVFAALDKVDNAQMIQMERLFIAKLVPGFDASTDVPKKIWTTDPIYSGARATVQEIWQGVQDWNEILWA  240 (383)
T ss_dssp             HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHHHHCGGGHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             64675899999999988788899999999999877468987056899889844886899999999887317659999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~NlV~e~ll~~L~~~~f~~~~Aa~nGD~~t~~l~~s~q~D~~R~~~w~~alvk~~l~~d~e~~~~Nr~~lq~Wi~~W~~~  320 (383)
T d1mhyb_         241 GHAVYDATFGQFARREFFQRLATVYGDTLTPFFTAQSQTYFQTTRGAIDDLFVYCLANDSEFGAHNRTFLNAWTEHYLAS  320 (383)
T ss_dssp             HHHTHHHHHHHHHHTTTHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             98879986589999999999999759705699999999899999999999999998469522155899999999999999


Q ss_pred             --------------------------------------------------------------C
Q ss_conf             --------------------------------------------------------------9
Q 003496          278 --------------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------------~  278 (815)
                                                                                    .
T Consensus       321 a~~A~~~l~pi~~~~p~~~~~~~~~~~~~a~~rv~~~~~~~~a~~i~~~~~~~~~~~~~~~~~  383 (383)
T d1mhyb_         321 SVAALKDFVGLYAKVEKVAGATDSAGVSEALQRVFGDWKIDYADKIGFRVDVDQKVDAVLAGY  383 (383)
T ss_dssp             HHHHHHHHGGGGGGSCCCTTTTSHHHHHHHHHHHHHHHHHHTHHHHTCCCCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
T ss_conf             999999867876047754431105789999999999885433154176546999999986469

>d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SAICAR synthase-like
superfamily: SAICAR synthase-like
family: Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta
domain: Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=28886.30  Aligned_cols=1  Identities=0%  Similarity=-0.925  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~r~~~~l~~~~~~Gi~~sv~~l~~~~~~~~L~~~dF~~~~k~~~~~~~~~~~~~~~~fkfk~Y~P~vF~~lR~~fgi~   80 (383)
T d1bo1a_           1 KLFRASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLPSRFKFKEYCPMVFRNLRERFGID   80 (383)
T ss_dssp             CCCCCSSHHHHHHHHHHHHHHHHHTTSCCCSSCCGGGGTCEEEEEEECBSSSCSSSCSEEEEEEECHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECHHHHHHHHHHCCCC
T ss_conf             94410238999999737988875228996000371003445897347777886779887079983799999999981989


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~dy~~Sl~~~~~~~~~s~GkSGs~F~~t~D~rfiiKti~~~E~~~l~~~l~~Y~~h~~~~n~~TLL~k~~Gly~i~~~~  160 (383)
T d1bo1a_          81 DQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDG  160 (383)
T ss_dssp             HHHHHHHHHSSCCEECCCC----CCEEECTTSSEEEECCCHHHHHHHHHHHHHHHHHHHTTTTCCSSCCEEEEEEEEETT
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEEEECC
T ss_conf             89999972788654345657767867880699689998579999999999899999998607875787634303787479


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~lKD~df~~~~~~i~l~~~~k~~l~~ql~~D~~fL~~  240 (383)
T d1bo1a_         161 VETYMVVTRNVFSHRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEFLAQ  240 (383)
T ss_dssp             EEEEEEEEECSSCSSSCCSEEEEECCCSSSSCSCSGGGSSSCCEECHHHHHHTTCCCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf             52799998424567765103676158632567675334555204656778764688230799999999999999999987


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~imDYSLLvGIh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (383)
T d1bo1a_         241 LKIMDYSLLVGIHDVDRAEQEEMEVEERAEDEECENDGVGGNLLCSYGTPPDSPGNLLSFPRFFGPGEFDPSVDVYAMKS  320 (383)
T ss_dssp             HTCCSCCEEEEEEEHHHHHHHHHHHHHHTTTTC-----------------------------------CCSCCTTTSTTE
T ss_pred             CCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             78675043675512211112211001124555444555564322345789788302221553346644577765445445


Q ss_pred             --------------------------------------------------------------C
Q ss_conf             --------------------------------------------------------------9
Q 003496          278 --------------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------------~  278 (815)
                                                                                    .
T Consensus       321 ~~~~~~~~vyyiGIIDiLq~Y~~~KklE~~~Ksl~~~~g~~IS~v~P~~Ya~RF~~Fi~~I~~  383 (383)
T d1bo1a_         321 HESSPKKEVYFMAIIDILTPYDTKKKAAHAAKTVKHGAGAEISTVNPEQYSKRFNEFMSNILT  383 (383)
T ss_dssp             EECSSTTEEEEEEECCSCC------------------CCCSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             678997599999999715779689999999999211889896127989999999999998649

>d1imva_ e.1.1.1 (A:) Pigment epithelium-derived factor, PEDF {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Serpins
superfamily: Serpins
family: Serpins
domain: Pigment epithelium-derived factor, PEDF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=28885.20  Aligned_cols=1  Identities=0%  Similarity=-0.759  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~L~~~l~~~~~~~Niv~SP~si~~~L~~l~~Ga~g~T~~el~~~L~~~~~~~   80 (383)
T d1imva_           1 TGALVEEEDPFFKVPVNKLAAAVSNFGYDLYRVRSSMSPTTNVLLSPLSVATALSALSLGADERTESIIHRALYYDLISS   80 (383)
T ss_dssp             CCCCCCCCSHHHHSHHHHHHHHHHHHHHHHHHHHHHHCTTSCEEECHHHHHHHHHHHGGGCCHHHHHHHHHHTTGGGCCC
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCH
T ss_conf             99866554754458289999999999999999985129698199888999999999998647399999999738999984


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~l~~~~~~~~~~l~~~n~i~v~~~~~~~~~f~~~~~~~y~~~~~~~~~~~~~~~~~IN~wv~~~T~g~I~~~  160 (383)
T d1imva_          81 PDIHGTYKELLDTVTAPQKNLKSASRIVFEKKLRIKSSFVAPLEKSYGTRPRVLTGNPRLDLQEINNWVQAQMKGKLARS  160 (383)
T ss_dssp             SCHHHHHHHHHHHHTSTTSCEEEEEEEEECTTCCCCHHHHHHHHHHHCCCCEECCSCHHHHHHHHHHHHHHHTTTCSCCC
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             89999999998750067763677877886168741668888887623764664354479999999999985075620364


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~t~~~lvna~~fk~~W~~~F~~~~t~~~~F~~~~~~~~~V~mM~~~~~~~~~~~~~~~~~~vv~lp~~~~~sm~  240 (383)
T d1imva_         161 TKEIPDEISILLLGVAHFKGQWVTKFDSRKTSLEDFYLDEERTVRVPMMSDPKAVLRYGLDSDLSCKIAQLPLTGSMSII  240 (383)
T ss_dssp             CSCCCSSCSEEEEEEEEEECCEEECCCGGGCEEEEEESSSSCEEEEEEEEEEEEEEEEEEETTTTEEEEEEEETTTEEEE
T ss_pred             CCCCCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCEEEE
T ss_conf             33438665124311104423202556533454464234798479830211245514566516655389994137973899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 iiLP~~~~~~l~~l~~~l~~~~l~~~~~~~~~~~v~v~lPkF~i~~~~dL~~~L~~lGl~~~F~~adfs~is~~~l~vs~  320 (383)
T d1imva_         241 FFLPLKVTQNLTLIEESLTSEFIHDIDRELKTVQAVLTVPKLKLSYEGEVTKSLQEMKLQSLFDSPDFSKITGKPIKLTQ  320 (383)
T ss_dssp             EEEESSCCSCCHHHHTTCCHHHHHHHHHHCEEEEEEEEEECEEEEEEEECHHHHHTTTTTHHHHSCCCTTTCSSCCCEEE
T ss_pred             EEEECCCCCCHHHHHHHCCHHHHHHHHHHCCCEEEEEEECEEEEEEECCHHHHHHHCCHHHHCCCCCCCCCCCCCCEEEE
T ss_conf             99962667886787664068899998750642279995021887540246675431343330345674556799947445


Q ss_pred             --------------------------------------------------------------C
Q ss_conf             --------------------------------------------------------------9
Q 003496          278 --------------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------------~  278 (815)
                                                                                    +
T Consensus       321 v~hka~ieVdE~G~~a~a~t~~~~~~~~~~~~f~~drPF~f~I~~~~t~~iLF~G~v~~P~~~  383 (383)
T d1imva_         321 VEHRAGFEWNEDGAGTTPSPGLQPAHLTFPLDYHLNQPFIFVLRDTDTGALLFIGKILDPRGP  383 (383)
T ss_dssp             EEEEEEEEECSCEEECC--------CCCCCCEEECCSCEEEEEEETTTCCEEEEEEESCTTCC
T ss_pred             EEEEEEEEECCCCCCCCCCCCEECCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEECCCCCC
T ss_conf             789999999888611132222101567899679911999999999999968999995289997

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=28886.06  Aligned_cols=1  Identities=0%  Similarity=-1.059  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~   80 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKVNEV   80 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCCEEECCCS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCCEEECCCEEECCCCHHHHHHHHHCCCCCEECCCC
T ss_conf             98998978899999999986899789993499874506688778982895776696798769999999859962222676


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (383)
T d2v5za1          81 ERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLA  160 (383)
T ss_dssp             SEEEEEETTEEEEECSSSCCCCSHHHHHHHHHHHHHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHCSSHHHHHHH
T ss_pred             CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             63477347643223444200011444554899999999866430011321013455544667999998704626778888


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~i~~~~~v~~I~~~~~~v  240 (383)
T d2v5za1         161 TLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENV  240 (383)
T ss_dssp             HHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHHHHGGGEEESCCEEEEECSSSSE
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCEEEECCCCEEEEECCCEE
T ss_conf             87654220246302467889999886132212333246762133144154999999987598499368606899609969


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~  320 (383)
T d2v5za1         241 LVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYME  320 (383)
T ss_dssp             EEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCTTHHHHHGGGTTCCBTTEEECSGGGCSSSTTSHH
T ss_pred             EEEECCCCEEECCEEEECCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCHH
T ss_conf             99988997898799998989899951824899999999999975447754401354408768668556653466775067


Q ss_pred             --------------------------------------------------------------C
Q ss_conf             --------------------------------------------------------------9
Q 003496          278 --------------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------------~  278 (815)
                                                                                    +
T Consensus       321 ga~~~g~~~a~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~P~~p~~~~~i~~~~  383 (383)
T d2v5za1         321 GAVEAGERAAREILHAMGKIPEDEIWQSEPESVDVPAQPITTTFLERHLPSVPGLLRLIGLTT  383 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSCGGGSSCCCCCCSSSCCCCCCCCHHHHHCCCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC
T ss_conf             899987999999999862588044302484224655454545605224999987403167779

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=28881.43  Aligned_cols=1  Identities=0%  Similarity=-0.959  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~P~GL~N~GNtCY~NSvLQ~L~~ip~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~p~~~~~~l~   80 (383)
T d2ayna1           1 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLH   80 (383)
T ss_dssp             CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHCSEECCHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             98995858898406999999999766999999985145315777645277999999999999865898457799999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~QqDa~Ef~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~~~~c~~c  160 (383)
T d2ayna1          81 MAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTES  160 (383)
T ss_dssp             HHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEESSS
T ss_pred             HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCEEEEEEEEEEEEEEEECCC
T ss_conf             97376502555672245439999998788999998753203644211101211124667872054022899988883578


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~l~L~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~  240 (383)
T d2ayna1         161 EEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVN  240 (383)
T ss_dssp             CCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTEECCCCEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSC
T ss_pred             CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEECCCEEECCCCCCE
T ss_conf             96551002231323210221010013456665201100124532376401202346502341453410220120567621


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~K~~~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L  320 (383)
T d2ayna1         241 AKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDL  320 (383)
T ss_dssp             CBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTTTCCCSEEEE
T ss_pred             EECCCEECCCCEEECHHHCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             33584774687664432146033013321024554432211013667554434542222236533344446789951999


Q ss_pred             --------------------------------------------------------------C
Q ss_conf             --------------------------------------------------------------9
Q 003496          278 --------------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------------~  278 (815)
                                                                                    .
T Consensus       321 ~avi~H~G~s~~~GHY~a~vk~~~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~aYiLfY~r~  383 (383)
T d2ayna1         321 QAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPR  383 (383)
T ss_dssp             EEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEECC
T ss_pred             EEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCEEEECHHHHHHHHCCCCCCCEEEEEEEEC
T ss_conf             999999789999977089999999928999899508937999977527998893699999879

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=100.00  E-value=0  Score=28880.35  Aligned_cols=1  Identities=0%  Similarity=0.071  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d   80 (383)
T d1gy8a_           1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN   80 (383)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCC
T ss_conf             96979995787689999999999828998999826876555300133566677776541133332235541799784568


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  160 (383)
T d1gy8a_          81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNA  160 (383)
T ss_dssp             HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CC
T ss_pred             HHHHHHHHHCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             78866666224012043232443222223222233134554442232001110477533333332222334433222222


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~~~~  240 (383)
T d1gy8a_         161 EPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQ  240 (383)
T ss_dssp             CCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC-
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             22123357899988886676799999999998599779971230515676666555666510027999999986103454


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s~~el~~~  320 (383)
T d1gy8a_         241 RLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIEV  320 (383)
T ss_dssp             ----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHHHHH
T ss_pred             CCHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEHHHHHHH
T ss_conf             20123333037835873785546899747856888999999999986402221111346753899689996359999999


Q ss_pred             --------------------------------------------------------------C
Q ss_conf             --------------------------------------------------------------9
Q 003496          278 --------------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------------~  278 (815)
                                                                                    .
T Consensus       321 i~~~~~~~~~~~~~~~~~~d~~~~~~d~~k~~k~LGw~P~~~l~e~i~~t~~~w~~~~~~~~~  383 (383)
T d1gy8a_         321 ARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTHPNGYA  383 (383)
T ss_dssp             HHHHHCCCCCEEEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTCTTTTC
T ss_pred             HHHHHCCCCCEEECCCCCCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             999869997648899999986785357899999879966787999999999999986800489

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=28807.20  Aligned_cols=1  Identities=0%  Similarity=-0.428  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~   80 (382)
T d1u08a_           1 PLIPQSKLPQLGTTIFTQMSALAQQHQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLY   80 (382)
T ss_dssp             CCCCCCSCCCCCCCHHHHHHHHHHHTTCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHCCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             98824547799986999999996269978854988999778999999999985599889898677999999999999984


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~  160 (382)
T d1u08a_          81 GYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERT  160 (382)
T ss_dssp             SCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTE
T ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHCCCC
T ss_conf             99988772378646358889998751035640599731443213455443133200012214335689999731213574


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~R  240 (382)
T d1u08a_         161 RLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWK  240 (382)
T ss_dssp             EEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGC
T ss_pred             CEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
T ss_conf             08998798765454565332012332210243202430320210343345542000123468579985035521478665


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 iG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~p~gg~~~~~  320 (382)
T d1u08a_         241 VGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLV  320 (382)
T ss_dssp             CEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSEEEE
T ss_pred             CHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEEE
T ss_conf             11010210137888752022323456433322333222206777789999876300002232037857956894679989


Q ss_pred             -------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------~  278 (815)
                                                                                   -
T Consensus       321 ~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~~~e~l~~al~RL~~l  382 (382)
T d1u08a_         321 DYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQL  382 (382)
T ss_dssp             ECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTTC
T ss_pred             ECCCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHCC
T ss_conf             56888999999999999997999998224527899989889999809999999999998179

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=0  Score=28805.96  Aligned_cols=1  Identities=0%  Similarity=0.303  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~~~~~r~~~~~~s~~~~i~~~a~~~~~~G~~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~   80 (382)
T d1b5pa_           1 MRGLSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEK   80 (382)
T ss_dssp             CCCCCHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             93788999848988899999999999967998289999989999889999999999865886899987889999999764


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~  160 (382)
T d1b5pa_          81 FRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRA  160 (382)
T ss_dssp             HHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTT
T ss_pred             HHHHCCCCCCCCCCEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf             44303411265534056778999999999967997989987998477999999845847998554101458999999973


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G  240 (382)
T d1b5pa_         161 ITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTG  240 (382)
T ss_dssp             CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGG
T ss_pred             CCCCCEEEEECCCCCCCCHHCCHHHHHHHHHHHHHCCEEEEEECCCCCEECCCCCCCHHHCCCCCEEEEECCHHHCCCCH
T ss_conf             78897699989997976600799999999999998590899976641232178988887818997799946346451807


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 lR~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~gg  320 (382)
T d1b5pa_         241 WRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGA  320 (382)
T ss_dssp             GCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSBT
T ss_pred             HHEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCE
T ss_conf             56699998999999999998750357653222222222233121157899999999862267898876449767568941


Q ss_pred             -------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------~  278 (815)
                                                                                   -
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~~~~~e~l~~al~rl~~~L  382 (382)
T d1b5pa_         321 FYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVL  382 (382)
T ss_dssp             TEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGGGC
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf             79968578999999999999997897999572258999699997499999999999999869

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=0  Score=28805.39  Aligned_cols=1  Identities=0%  Similarity=-0.460  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (382)
T d1wkva1           1 ALADISGYLDVLDSVRGFSYLENAREVLRSGEARCLGNPRSEPEYVKALYVIGASRIPVGDGCSHTLEELGVFDISVPGE   80 (382)
T ss_dssp             CEEEGGGGTTHHHHCCSSTTHHHHHHHHHHTEEECBSSGGGCHHHHHHHHHHTCSEEEBSSSCEEETTTTTTTCCCSCTT
T ss_pred             CCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCEECCCCCC
T ss_conf             96421015677775324278999999986035030579975478999999844553556776531166526210489854


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~l~~~~~~~PTPLvrl~l~~~~G~~IylKlE~~NPtGgSfKdR~A~~~i~~A~~~~~~g~~VVeaSSGN~GiAlA  160 (382)
T d1wkva1          81 MVFPSPLDFFERGKPTPLVRSRLQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRRVEKGSLVADATSSNFGVALS  160 (382)
T ss_dssp             CEESSHHHHHHHSCSCCEEECCCCCSTTEEEEEEEGGGSTTTSBTTHHHHHHHHHHHTTTSCTTCEEEEECCHHHHHHHH
T ss_pred             EEECCHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHH
T ss_conf             67579899856899998777877888898999985478999876299999999999985268999999858759999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~aa~lGik~~Iv~P~~~~~~K~~~ira~GAeVi~~~~~~~~~~~~~~a~~~a~~~~~~~~~q~~N~~~~~~h~~ttg~E  240 (382)
T d1wkva1         161 AVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPRVMKDSKNEGFVHVNQFYNDANFEAHMRGTARE  240 (382)
T ss_dssp             HHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEEETTCSSSGGGHHHHHHHHHHHCCEECCTTTCHHHHHHHHHTHHHH
T ss_pred             HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHHCCHHH
T ss_conf             99998499779996200112222222356861154375105679999876520245754332345430232112112178


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 I~eQl~~~~~~~d~vv~~vGtGG~~~Gi~~~lk~~~p~vkiigVep~~~~~i~g~~~i~~g~~~~~~~d~~~~i~~Vsd~  320 (382)
T d1wkva1         241 IFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRVETGMLWINMLDISYTLAEVTLE  320 (382)
T ss_dssp             HHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEECTTCCCTTCCCGGGCCSHHHHSCCCCEEEEECHH
T ss_pred             HHHHHHCCCCCEEEEEEECCCCCCCCCCEEEHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHH
T ss_conf             99996467873167897416654233320101231876623675244444445641024576575646644299997999


Q ss_pred             -------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------~  278 (815)
                                                                                   .
T Consensus       321 Eai~a~r~La~~EGI~vgpSSGaavaaa~k~a~~~~~~~~~vVvIlcD~G~rYlstiyN~~~  382 (382)
T d1wkva1         321 EAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPDTGFKYLSLVQNALE  382 (382)
T ss_dssp             HHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTTCSCSEEEEEEECBBGGGCHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCC
T ss_conf             99999999999819888189999999999998640689998999988897432676426789

>d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltogenic amylase, central domain
species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]

Probab=100.00  E-value=0  Score=28804.97  Aligned_cols=1  Identities=0%  Similarity=-1.357  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~p~W~~~~v~Y~i~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~~gi~~kLdylk~LGv~~i~l~Pi~~~~~~~   80 (382)
T d1ea9c3           1 FQPPAWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSKLGVNAVYFTPLFKATTNH   80 (382)
T ss_dssp             CCCCTHHHHCCCCEECSTTSCCCCSCSCSSCCSCCCSSSCCCSSCCCCCHHHHHHTHHHHHHHTCSEEEECCCSSCSSSS
T ss_pred             CCCCCCCCCCEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
T ss_conf             97986023886999971220379988786676434555777676678189999985699986799889969770178877


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 gY~~~~~~~id~~~Gt~~df~~lv~~~h~~gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (382)
T d1ea9c3          81 KYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVDGIP  160 (382)
T ss_dssp             TTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEEECCCSBCCTTTHHHHHHHTTTTTCTTTTSSCBCSSSCCCTTSCC
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             87754453544366777899999999986264378763013441348325556406876544430013464432235763


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~d~n~~~~~v~~~l~~~~~~w~~~~gvDGfR~Da~~~~~~~~~~~~~~~~~~~~p~~~~~~e~~~~~~~  240 (382)
T d1ea9c3         161 TYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVANEVSHQFWREFRRVVKQANPDAYILGEVWHESSI  240 (382)
T ss_dssp             SBCBSSSCTTSBBCCTTSHHHHHHHHHHHHHHHHHHCCSEEEETTCTTSCHHHHHHHHHHHHHHCTTCEEEECCCSCCTT
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf             22233344345742301388999999987515653146678743620076566545666554008981588543145532


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nHD~~r~~~~~~~~~~~~~~a~~  320 (382)
T d1ea9c3         241 WLEGDQFDAVMNYPFTNAVLDFFIHQIADAEKFSFMLGKQLAGYPRQASEVMFNLLDSHDTARLLTQADGDKRKMKLAVL  320 (382)
T ss_dssp             TTTTTSCSEEBCHHHHHHHHHHTTSCCSCHHHHHHHHHHTTTTSCHHHHHTCEECSCCTTSCCHHHHHCSCHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             13676432212343004667655046421567899999999854020654405520367666312246787999999999


Q ss_pred             -------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------~  278 (815)
                                                                                   .
T Consensus       321 ~~l~~pG~P~Iy~G~E~g~~~~~~~~~r~~~~w~~~~~~~~l~~~~~~L~~lR~~~paL~~G  382 (382)
T d1ea9c3         321 FQFTYFGTPCIYYGDEVGLDGGHDPGCRKCMEWDETKHDKDLFAFYQTVIRLRQAHAALRTG  382 (382)
T ss_dssp             HHTTSSSEECCCSSCSSCCCCCSHHHHTCCCCCCTTSCCHHHHHHHHHHHHHHHHCSHHHHC
T ss_pred             HHHHCCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCC
T ss_conf             99971798787755754888999977648878877765389999999999999568975189

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=28808.00  Aligned_cols=1  Identities=0%  Similarity=-1.489  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~l~~PGP~~v~~~V~~Am~~~~~~hr~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~   80 (382)
T d2bkwa1           1 KSVDTLLIPGPIILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILS   80 (382)
T ss_dssp             CCCCEECSSSSCCCCHHHHHTTSCCCCCTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCT
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHH
T ss_conf             98656427899788799999727326897769999999999999999985334898719999386899999999998876


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~~~~~~  160 (382)
T d2bkwa1          81 KAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQA  160 (382)
T ss_dssp             TCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHH
T ss_pred             CCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHEEEEECCCCCCCCCCCHHHHHH
T ss_conf             07998248997312334434311100133333223677775641579998630110100232112246302441233332


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (382)
T d2bkwa1         161 IKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWT  240 (382)
T ss_dssp             HHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHH
T ss_pred             CCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf             01334310256302455322123233557569950566667689750255405999864331035888663011122100


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~  320 (382)
T d2bkwa1         241 PIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVY  320 (382)
T ss_dssp             HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEE
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCEEEEC
T ss_conf             23311345556535677577789999999999876324557999999999999764115532234683011587379970


Q ss_pred             -------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------~  278 (815)
                                                                                   .
T Consensus       321 ~~~~~~~~~~L~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~~~  382 (382)
T d2bkwa1         321 VADPPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQRK  382 (382)
T ss_dssp             CSCHHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC-
T ss_pred             CCCHHHHHHHHHHCCEEEECCCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             89989999999978939977877311699899858868997999999999999999997739

>d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: Choline/Carnitine O-acyltransferase
domain: Choline O-acetyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=0  Score=28807.47  Aligned_cols=1  Identities=0%  Similarity=-0.394  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 e~~LP~LPvP~L~~Tl~ryL~s~~Pl~s~ee~~~t~~~v~~F~~~~g~G~~Lq~~L~~~~~~~~nwl~~~W~~~~YL~~R   80 (382)
T d1t1ua1           1 ELDLPKLPVPPLQQTLATYLQCMQHLVPEEQFRKSQAIVKRFGAPGGLGETLQEKLLERQEKTANWVSEYWLNDMYLNNR   80 (382)
T ss_dssp             CTTSCCCCCCCHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHHHSSSTTHHHHHHHHTTTCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC
T ss_conf             99998899999999999999985445999999999999999751698179999999987446878607778765016788


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~pL~~~~n~~~~~~~~~~~~~~~q~~rAA~l~~~~l~f~~~l~~~~l~~~~~~~~~~~~plcM~qy~~lF~t~RiP~~~~  160 (382)
T d1t1ua1          81 LALPVNSSPAVIFARQHFQDTNDQLRFAACLISGVLSYKTLLDSHSLPTDWAKGQLSGQPLCMKQYYRLFSSYRLPGHTQ  160 (382)
T ss_dssp             SCHHHHTCCEEEECCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTCSCCTTSSSCCSSSCCCCTTGGGTTTEEEECCSSS
T ss_pred             CCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCHHHHHHHCCCEECCCCCC
T ss_conf             78650056612105666876037999999999999999999756656861210224898667899998728670568998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 D~l~~~~~~~~~~~~HIvVl~~g~~y~v~v~~~~~~l~~~ei~~~l~~I~~~~~~~~~~~~~ig~LT~~~Rd~Wa~~r~~  240 (382)
T d1t1ua1         161 DTLVAQKSSIMPEPEHVIVACCNQFFVLDVVINFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAKARTV  240 (382)
T ss_dssp             CEEEECCCSSSSCCCEEEEEETTEEEEEESEETTEECCHHHHHHHHHHHHHHHTCSTTCCCCGGGGGGSCHHHHHHHHHH
T ss_pred             CEEEECCCCCCCCCCEEEEEECCEEEEEEEEECCEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             74665576778898779999899899999998990688999999999999624455556888450555871999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 L~~~~~N~~~L~~Ie~alfvv~LDd~~~~~~~e~~~~~~~l~g~~~~~~~~NRW~DKslq~IV~~nG~~g~~~EHS~~DG  320 (382)
T d1t1ua1         241 LLKDSTNRDSLDMIERCICLVCLDGPGTGELSDTHRALQLLHGGGCSLNGANRWYDKSLQFVVGRDGTCGVVCEHSPFDG  320 (382)
T ss_dssp             HTTSHHHHHHHHHHHTCSCEEEECCCCSSCCCHHHHHHHHHHTTSTTTTTTSCCTTBSEEEEECTTSCEEEEECSTTCCH
T ss_pred             HHCCCCHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCH
T ss_conf             85596158999999866489992799988701689999986178778998610677873799978986898504676249


Q ss_pred             -------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------~  278 (815)
                                                                                   -
T Consensus       321 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~L~f~l~~~~~~~I~~a~~~~~~~~~dl  382 (382)
T d1t1ua1         321 IVLVQCTEHLLKHMMTSNKKLVRADSVSELPAPRRLRWKCSPETQGHLASSAEKLQRIVKNL  382 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCTTSCSSSCSCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHE
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999998640677888887778999658788658899999999999999997349

>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: Choline/Carnitine O-acyltransferase
domain: Peroxisomal carnitine O-octanoyltransferase, COT
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=0  Score=28810.04  Aligned_cols=1  Identities=0%  Similarity=-1.324  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 e~Tf~~q~~LP~LPvP~Le~Tl~ryL~s~~pl~~~~e~~~t~~~v~~F~~~~G~~Lq~~L~e~a~~~~NWl~~~W~~~~Y   80 (382)
T d1xl7a1           1 ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAY   80 (382)
T ss_dssp             CCTTTTGGGCCCCCCCCHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCTTSSHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             96431427799898999899999999986566999999999999999974939999999998740698850587867753


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 L~~R~pl~~~~n~~~~~~~~~~~~~~~~~~q~~raA~l~~~~~~f~~~l~~~~l~~~~~~~~plcm~qy~~lF~t~RiPg  160 (382)
T d1xl7a1          81 LDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPG  160 (382)
T ss_dssp             TSCCSCHHHHTCEEEECGGGGTTCCCCTTCHHHHHHHHHHHHHHHHHHHHTTCSCCCEETTEECCCGGGGGTSSEEEECC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCEEECHHHHHHHCCCEECCC
T ss_conf             25577864555666766556777885500699999999999999998740365471230998760799997612771689


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~D~~~~~~~~~~~~~~~~HIvVl~~g~~ykv~v~~~~~~~s~~el~~~l~~I~~~~~~~~~~~~vg~LTt~~Rd~WA~  240 (382)
T d1xl7a1         161 ITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAK  240 (382)
T ss_dssp             SSCCEEEECCCCTTTCCCCCEEEEEETTEEEEEESEETTEECCHHHHHHHHHHHHHHHHTSCCCCCGGGGGGSCHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCCCCEEEEEECCCEEEEEEEECCEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             98772002355556789886699997893089999329908889999999999997354678887755067656479999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~R~~L~~~~~~N~~~L~~Ie~AlfvvcLD~~~~~~~~e~~~~~~~~~l~G~~~NRW~DKs~q~IV~~nG~~G~~~EHS~~  320 (382)
T d1xl7a1         241 AREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGCCCDHAPY  320 (382)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHSSCEEEECCCCCCCCSSCCHHHHHHHHSSCGGGCCTTBSCEEEECTTSCEEEEECSSSC
T ss_pred             HHHHHHHCCHHHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCH
T ss_conf             99997617842699999987446888613568889858999999963859873327766713899689888987368716


Q ss_pred             -------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------~  278 (815)
                                                                                   +
T Consensus       321 DG~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~p~~L~f~l~~~i~~~I~~A~~~~~k~as  382 (382)
T d1xl7a1         321 DAMVMVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAAS  382 (382)
T ss_dssp             CTHHHHHHHHHHHHHHHHTTTCCCSCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf             69999999999999976127878888887789997577896698999999999999998509

>d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltogenic amylase, central domain
species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]

Probab=100.00  E-value=0  Score=28806.32  Aligned_cols=1  Identities=0%  Similarity=-0.659  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~P~w~~~~viY~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~kLdyl~~lGi~~I~l~Pv~~~~~   80 (382)
T d1wzla3           1 VFTTPEWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFASPS   80 (382)
T ss_dssp             SCCCCSGGGGCCEEEECGGGTCCCCGGGCCTTCCCCCTTCCCCTTCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSS
T ss_pred             CCCCCCCCCCCEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf             97998420288799997024137998778766643344566655777785899999831999977997899798677875


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~gY~~~~~~~vd~~~Gt~~d~~~lv~~~H~~Gi~vilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (382)
T d1wzla3          81 HHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR  160 (382)
T ss_dssp             SSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCTTSHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSC
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             45776556320236788788999999999752451576321013333333331001037654246643003654566789


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~dLn~~n~~v~~~~~~~~~~w~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~~i~e~~~~~~  240 (382)
T d1wzla3         161 TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWMEQGIDGWRLDVANEVDHAFWREFRRLVKSLNPDALIVGEIWHDAS  240 (382)
T ss_dssp             CSBCBSSSSCTTCBBBCTTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEECCSSCCG
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf             74444344556678507799999999999999999758875034334335645556789998752884478620035652


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~  320 (382)
T d1wzla3         241 GWLMGDQFDSVMNYLFRESVIRFFATGEIHAERFDAELTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAKFRLAV  320 (382)
T ss_dssp             GGCSSSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHTTSCHHHHTTCEEESCCTTSCCHHHHTTTCHHHHHHHH
T ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHCCCCHHHHHHHH
T ss_conf             02203342023302677899986514764314678888753201643245663123058775536765389799999999


Q ss_pred             -------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------~  278 (815)
                                                                                   +
T Consensus       321 ~~llt~pG~P~iy~G~E~g~~g~~~~~~r~~~~W~~~~~~~~l~~~~~~L~~lR~~~paL~r  382 (382)
T d1wzla3         321 LFQMTYLGTPLIYYGDEIGMAGATDPDCLRPMIWEEKEQNRGLFEFYKELIRLRHRLASLTR  382 (382)
T ss_dssp             HHHHHSSSEEEEETTGGGTCCCCSTTGGGCCCCCCGGGSCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHCC
T ss_conf             99998089878973730277899995445788988655570899999999999830986488

>d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Neopullulanase, central domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=0  Score=28807.12  Aligned_cols=1  Identities=0%  Similarity=-1.723  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~P~w~~~~viY~v~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~kldyl~~LGv~~i~L~Pi~~~~~   80 (382)
T d1j0ha3           1 DLFEAPDWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLVDLGITGIYLTPIFRSPS   80 (382)
T ss_dssp             GSCCCCGGGGGCCEEEECGGGTCCSCGGGSCTTCCCTTSSCCCSSCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSS
T ss_pred             CCCCCCCCHHCCEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf             98899964107779999755312799887766665345557766766785899999867999976998899698876876


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~gy~~~d~~~vd~~~Gt~~~~~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (382)
T d1j0ha3          81 NHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPR  160 (382)
T ss_dssp             SSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSS
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             56877565643278879979999999986423643787752102333344312220368745557742224566545663


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~dln~~n~~vr~~l~~~~~~wi~~~giDGfR~Da~~~~~~~~~~~~~~~~~~~~p~~~~i~e~~~~~~  240 (382)
T d1j0ha3         161 PNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFRQEVKALKPDVYILGEIWHDAM  240 (382)
T ss_dssp             CSBCBSTTCTTSBBBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEECCSSCCG
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf             23332356777764440769999999998886766441157984453216645534444433202898522343234512


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~R~~~~~~~~~~~~~~a~  320 (382)
T d1j0ha3         241 PWLRGDQFDAVMNYPFTDGVLRFFAKEEISARQFANQMMHVLHSYPNNVNEAAFNLLGSHDTSRILTVCGGDIRKVKLLF  320 (382)
T ss_dssp             GGCSSSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTSCHHHHHTCBCBSCCTTSCCHHHHTTTCHHHHHHHH
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             34213554410155310456654303543201221022210113654467662320467777741213488599999999


Q ss_pred             -------------------------------------------------------------C
Q ss_conf             -------------------------------------------------------------9
Q 003496          278 -------------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------------~  278 (815)
                                                                                   .
T Consensus       321 ~lllt~pG~P~iy~G~E~G~~~~~~~~~r~~~~W~~~~~~~~l~~~~k~L~~lR~~~paL~r  382 (382)
T d1j0ha3         321 LFQLTFTGSPCIYYGDEIGMTGGNDPECRKCMVWDPMQQNKELHQHVKQLIALRKQYRSLRR  382 (382)
T ss_dssp             HHHHHSSSCCEEETTGGGTCCCCSTTGGGCCCCCCTTTSCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHCCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCC
T ss_conf             99998179888986863286899880103577888654576999999999999842997586

>d1by7a_ e.1.1.1 (A:) Plasminogen activator inhibitor-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Serpins
superfamily: Serpins
family: Serpins
domain: Plasminogen activator inhibitor-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=28733.37  Aligned_cols=1  Identities=0%  Similarity=-1.590  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~l~~~~~~Fa~~L~~~l~~~~~~~N~v~SP~si~~~L~~l~~Ga~g~T~~el~~~L~~~~~~~~~~~~~~~~~~l~~~l   80 (381)
T d1by7a_           1 EDLCVANTLFALNLFKHLAKASPTQNLFLSPWSISSTMAMVYMGSRGSTEDQMAKVLQFNEVGAAADKIHSSFRSLSSAI   80 (381)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHSSSSCEEECHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTCCG-GGHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             90778999999999999873098985998789999999999986664999999997089987888999999999999998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~df~~~~~~a~~~IN~wv~~~T~g~I~~~~~~~~l~~~t  160 (381)
T d1by7a_          81 NASTGNYLLESVNKLFGEKSASFREEYIRLCQKYYSSEPQAVDFLECAEEARKKINSWVKTQTKGKIPNLLPEGSVDGDT  160 (381)
T ss_dssp             C------CEEEEEEEEEETTSCBCHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHTTTSCTTSSCTTSCCTTC
T ss_pred             HCCCCCCEEEECCCHHCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             56798847866000000368732889999999861773020443212599999999999975247754567855679731


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~lvna~~fk~~W~~~F~~~~t~~~~F~~~~~~~~~V~mm~~~~~~~~~~~~~~~~~~v~lp~~~~~~m~iilp~~~~~  240 (381)
T d1by7a_         161 RMVLVNAVYFKGKWKTPFEKKLNGLYPFRVNSAQRTPVQMMYLREKLNIGYIEDLKAQILELPYAGDVSMFLLLPDEIAD  240 (381)
T ss_dssp             CEEEEEEEEECCCBSSCCEECC---EEEEEETTEEEEECEEEEEEEEEEEEETTTTEEEEEEEETTTEEEEEEEESSCCS
T ss_pred             HHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCC
T ss_conf             75611244774211578752356555333689805899516651555543136767499996147970799996277665


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~v~lPkF~i~~~~dl~~~L~~lGi~~~F~~~~Adfs~is~~~~l~vs~i  320 (381)
T d1by7a_         241 VSTGLELLESEITYDKLNKWTSKDKMAEDEVEVYIPQFKLEEHYELRSILRSMGMEDAFNKGRANFSGMSERNDLFLSEV  320 (381)
T ss_dssp             SSSSCHHHHHHCCHHHHHHHTSTTTEEEEEEEEEEECEEEEEEEECHHHHHHTTCCGGGCTTTCCCTTTBSCSCCCCCEE
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEEECCCEEEEEEECHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCEEEEE
T ss_conf             35666776642258899987512114340489965648997550569999856851120445454445678898157667


Q ss_pred             ------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------~  278 (815)
                                                                                  +
T Consensus       321 ~q~~~ieVdE~Gt~aaa~t~~~~~~~~~~~~~~f~~nrPF~f~I~d~~t~~iLF~G~v~~P  381 (381)
T d1by7a_         321 FHQAMVDVNEEGTEAAAGTGGVMTGRTGHGGPQFVADHPFLFLIMHKITNCILFFGRFSSP  381 (381)
T ss_dssp             EEEEEEEECSCBC-----------------CCEEECCSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             EEEEEEEECCCCCCCCCCCCEEEECCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEECCC
T ss_conf             8889999878842023133200003568999879933998999999999978999994398

>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: alpha-mannosidase
domain: Golgi alpha-mannosidase II
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=0  Score=28733.11  Aligned_cols=1  Identities=100%  Similarity=3.493  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      |                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~q~~~~~~~~~~~~~~~kl~VhlV~HsH~D~gWl~t~~e~~~~~~~~i   80 (381)
T d3bvua3           1 CQDVVQDVPNVDVQMLELYDRMSFKDIDGGVWKQGWNIKYDPLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTKHI   80 (381)
T ss_dssp             CCCSSSCCCCCSEEHHHHHHHCCCCCCCCSSSTTSCCCCCCGGGCBTTBCEEEEEEEEEECCSSSSSCHHHHHHHTHHHH
T ss_pred             CCHHHHHCCCCCEEHHHHHHHCCCCCCCCCCCCCCCCEEECHHHCCCCCCCEEEEECCCCCCHHHCCCHHHHHHHHHHHH
T ss_conf             94366405766622687886521538999716677512205421476788379993877888002375999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 l~~~l~~l~~~p~~~F~~~~~~~~~~w~~~~~pe~~~~vk~lV~~GrlEivgg~wv~~De~~~~~es~Irql~~G~~~l~  160 (381)
T d3bvua3          81 LSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLK  160 (381)
T ss_dssp             HHHHHHHHHHCTTCCEEECCHHHHHHHHTTSCHHHHHHHHHHHHTTSEEESSCCSSCBCSSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEECCEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999999879997799835389999999749999999999998798799687121463457997999999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~fG~~p~~~w~~D~FGhs~~lp~il~~~Gi~~~~~~R~~~~~~~~~~~~k~lef~w~~~W~~~~~s~ilth~~~~~~Y~  240 (381)
T d3bvua3         161 QFMNVTPTASWAIAPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYD  240 (381)
T ss_dssp             HHHCCCCCEEEECSSSSBCTHHHHHHHTTTCCEEEECCCCHHHHHHHHHTTCSEEEECCTTCSSCTTCEEEEECCSSCSS
T ss_pred             HHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCHHHHCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCCCCC
T ss_conf             97599973589638887657789999856988699974135542005201466504304666899880457516555668


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~p~~~~~d~~~~~~f~f~~~~~~~~~~p~~~~~~~i~~~nv~~r~~~~~~~~~~~a~~~~tn~vL~p~G~Df~y~~a~~w  320 (381)
T d3bvua3         241 IPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEW  320 (381)
T ss_dssp             GGGTSSSCHHHHGGGCGGGSSTTSCCCTTSCCCCCCCTTTHHHHHHHHHHHHHHHHTTSSSSEEEEEEEEETCSCSHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHH
T ss_conf             85567887211345442123455777876668766625589999999999999986216887389816668787761037


Q ss_pred             ------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------~  278 (815)
                                                                                  .
T Consensus       321 ~~~~~n~~kli~~iN~~~~~~v~i~~ST~~~Yf~al~~~~~~~~~~~P~~~gDFfpYad~~  381 (381)
T d3bvua3         321 DVQRVNYERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRS  381 (381)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGCEEEEECCHHHHHHHHHHHHHTTSCCCCEEESCBCSCBSST
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             7888769999999971888881899889999999999987524778877678876788899

>d1odza_ c.1.8.3 (A:) Mannanase A, ManA {Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId: 155077]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Mannanase A, ManA
species: Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId: 155077]

Probab=100.00  E-value=0  Score=28728.59  Aligned_cols=1  Identities=100%  Similarity=1.134  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~p~~~~lvd~~At~~tk~L~~~L~~~~g~~il~Gqq~~~~~g~~~~~~~~~~sdv~~~tG~yPAv~G~D~~~~~~~~~~   80 (381)
T d1odza_           1 VKPVTVKLVDSQATMETRSLFAFMQEQRRHSIMFGHQHETTQGLTITRTDGTQSDTFNAVGDFAAVYGWDTLSIVAPKAE   80 (381)
T ss_dssp             CCCEECCCSSTTCCHHHHHHHHHHHHHTTTCEEEEEETTTTCCSSCSCCSSSCCHHHHHHSSCCSEEEEEGGGTSTTCTT
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHCCCCCCCCH
T ss_conf             98877620597779999999999998648966983355444564436665306667640377744201200135687321


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~GgIvt~~WH~~~P~~~~~~~~~~~~~~~d~~~~v~~~lpg~~~~~~~~~~ld~ia~~~~~L~~~~~~  160 (381)
T d1odza_          81 GDIVAQVKKAYARGGIITVSSHFDNPKTDTQKGVWPVGTSWDQTPAVVDSLPGGAYNPVLNGYLDQVAEWANNLKDEQGR  160 (381)
T ss_dssp             CCCHHHHHHHHHTTCEEEEECCCCCTTTGGGCSSTTTTSTTCCSCCSTTTSTTSTTHHHHHHHHHHHHHHHHTCBCTTSC
T ss_pred             HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             44999999999779959998730788987777641577643135667504899703699999999999999975540388


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~vPVl~Rp~hE~nG~WfwWg~~~~~p~~y~~lwr~~~~~l~~~~g~~Nliwv~sp~~~~~~~~~~~~~~YPGDdyVDivG  240 (381)
T d1odza_         161 LIPVIFRLYHENTGSWFWWGDKQSTPEQYKQLFRYSVEYLRDVKGVRNFLYAYSPNNFWDVTEANYLERYPGDEWVDVLG  240 (381)
T ss_dssp             BCCEEEECSCSTTSSSSTTSTTSSCHHHHHHHHHHHHHHHHTTSCCCSEEEEECCBCCSSCCHHHHHSSCCCTTTCSEEC
T ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             76289964210479865667889998999999999999998715986189986478787776444201089988677888


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~D~Y~~~~~~~~~~~~~~~~l~~~~~~A~~~gKp~altE~G~~~~~~~~~~~~~~W~~~~l~~i~~~p~~~~i~y~~~W~  320 (381)
T d1odza_         241 FDTYGPVADNADWFRNVVANAALVARMAEARGKIPVISGIGIRAPDIEAGLYDNQWYRKLISGLKADPDAREIAFLLVWR  320 (381)
T ss_dssp             CEEEECSSSCHHHHHHHHHHHHHHHHHHHHHTCEECBCEEEECHHHHHTTCCCTTHHHHHHHHHHHSTTGGGCSEEEECC
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf             63557888753589999999999999998559951663036667711026765426999999997282222443899985


Q ss_pred             ------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------~  278 (815)
                                                                                  .
T Consensus       321 N~~~~~~~~~~~~~~~~~~p~p~~~~~g~~~~~dF~~f~~~~~~lf~~dlp~ly~~p~~~~  381 (381)
T d1odza_         321 NAPQGVPGPNGTQVPHYWVPANRPENINNGTLEDFQAFYADEFTAFNRDIEQVYQRPTLIV  381 (381)
T ss_dssp             CCTTCEEC--CCEECCCCSCCSSHHHHHTSHHHHHHHHHHSTTEECGGGCCSCSCCCEECC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHCHHHHHCCCCCC
T ss_conf             6766556666677763336777634457642899999976960113444807551677779

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=100.00  E-value=0  Score=28728.33  Aligned_cols=1  Identities=0%  Similarity=-1.390  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~fp~l~~~~yld~~~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~   80 (381)
T d1elua_           1 QFPGLANKTYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGC   80 (381)
T ss_dssp             CCGGGTTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHH
T ss_pred             CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHH
T ss_conf             99878988895697636899999999999999865278765315679999999999999998397945199978858986


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~~~n~tG~  160 (381)
T d1elua_          81 DIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQ  160 (381)
T ss_dssp             HHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCC
T ss_pred             HHCCHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             21000233247853899546541132011122334542222322233333205899998640233222123333456531


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~~~~~~~p~~~~~~  240 (381)
T d1elua_         161 VLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWR  240 (381)
T ss_dssp             BCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTT
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             10035788987520345321022344334554442212222333333454422122305677741888986396100244


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~  320 (381)
T d1elua_         241 SITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQA  320 (381)
T ss_dssp             TEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC
T ss_conf             54433333443344432222333223204555433001588744421101456667899998875089769647887653


Q ss_pred             ------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------~  278 (815)
                                                                                  +
T Consensus       321 ~~vsf~~~~~~~~~~i~~~L~~~gi~v~~~~~~~~lRis~~~~nt~edid~ll~~l~e~~~  381 (381)
T d1elua_         321 GLVSFTVDSPLGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLADFGP  381 (381)
T ss_dssp             SEEEEEECSSSCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTTCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf             1899983898899999999996896898668999799955788999999999999996691

>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: MGS-like
domain: Mannosylglycerate synthase, MGS
species: Rhodothermus marinus [TaxId: 29549]

Probab=100.00  E-value=0  Score=28730.27  Aligned_cols=1  Identities=0%  Similarity=-0.693  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 slVVIP~~NEe~~il~~~v~~~a~~P~~~eIvVvDdsSdDtt~~i~~~~~~~~~~~~~~v~~~~~~~l~~~~~GKG~g~~   80 (381)
T d2bo4a1           1 SLVVFPFKHEHPEVLLHNVRVAAAHPRVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMN   80 (381)
T ss_dssp             CEEEEECCSSCHHHHHHHHHHHHHSTTCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHH
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCHHHH
T ss_conf             98999727885889999999997589814999986999875999999852300113321001110023546578848899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~A~~~g~~~a~gd~lvflDADl~~~~pe~i~~L~~~i~~g~d~V~g~y~R~~~~grvt~~l~~pll~~l~~~~~~~~i~d  160 (381)
T d2bo4a1          81 TALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADFGYGLVRHYFPRASTDAMITWMITRTGFALLWPHTELSWIEQ  160 (381)
T ss_dssp             HHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHHTTCSEEEEECCCCTTSCHHHHHTHHHHHHHHCTTSSGGGCSC
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99999997088888999758767677999999999876305758986314567882236755899999860201565054


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 Pl~G~~a~~R~~~~~L~~~~~v~~~~~~G~Di~lt~~A~~~G~rI~EV~i~~~~l~~~f~~v~~~~f~l~~~~~~~W~~~  240 (381)
T d2bo4a1         161 PLGGELLMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVQQGVSIYECYIPEGKAHRLYGGLDDLRTMLVECFAAIQSLQ  240 (381)
T ss_dssp             TTCCCEEEEHHHHHHHHHCHHHHTCCSTTHHHHHHHHHHHTTCCEEEEECTTCCCCCCSCCGGGGHHHHHHHHHHHHHHT
T ss_pred             CCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
T ss_conf             77610104099999862434556567866244999999985974784478778777899999999999999987782363


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~p~~~~g~~~~~~p~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (381)
T d2bo4a1         241 HEVVGQPAIHRQEHPHRVPVHIAERVGYDVEATLHRLMQHWTPRQVELLELFTTPVREGLRTCQRRPAFNFMDEMAWAAT  320 (381)
T ss_dssp             TCCCCSCCCEEECCCCCCCHHHHTCCCSCHHHHHHHHTSSCCHHHHHHGGGSCHHHHHHHHHTTTSCCCTTCCHHHHHHH
T ss_pred             CEECCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf             33322012022557445888888752047999999999755777999998569988888987444664778767999999


Q ss_pred             ------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------~  278 (815)
                                                                                  .
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (381)
T d2bo4a1         321 YHVLLEHFQPGDPDWEELLFKLWTTRVLNYTMTVALRGYDYAQQYLYRMLGRYRYQAALEN  381 (381)
T ss_dssp             HHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999997301460688871056889999999999976079899999999877787876249

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=28726.67  Aligned_cols=1  Identities=0%  Similarity=-0.494  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~e~p~~~tedfgFk~l~~~~~~~~~~d~lP~~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~   80 (381)
T d1xipa_           1 ASSLKDEVPTETSEDFGFKFLGQKQILPSFNEKLPFASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTF   80 (381)
T ss_dssp             CCEECCCCCEEEESSCEEEEEEEEECSCCCTTCCCSSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCC
T ss_pred             CCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCEEEEEEHHHHHHHHHCCCCCCCC
T ss_conf             97546667816646530587166212789544589644426899577788999889977999989978786556788862


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~ip~v~~vafs~d~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~  160 (381)
T d1xipa_          81 KWEKEIPDVIFVCFHGDQVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQL  160 (381)
T ss_dssp             SEEEECTTEEEEEEETTEEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EECCCCCCEEEEEEECCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEECCCCEEEEEECCCCEEEEEECCCCCCCC
T ss_conf             34168998689986189899995897899985100145446554556111021886069996589778999415864444


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy~~~~~~~ed~  240 (381)
T d1xipa_         161 AQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDE  240 (381)
T ss_dssp             EESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSS
T ss_pred             CCCCCEEEECCCCEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCC
T ss_conf             47752387338926999968968999818982036567788201578867786166899951756999987776666767


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~ii~~~~~~~~f~~~~Di~~pfgs~~R~p~y~~~~l~~w~~~~~~l~iv~Ss~s~di~vl~~~~~~~~~~D~~  320 (381)
T d1xipa_         241 VSYDQKMYIIKHIDGSASFQETFDITPPFGQIVRFPYMYKVTLSGLIEPDANVNVLASSCSSEVSIWDSKQVIEPSQDSE  320 (381)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEESSSCCCCCCSCCCCCEEEEEEEEEEETTEEEEEEEETTCSBCEEECSSSEEEESSGGG
T ss_pred             CCCCEEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEEECCCCEEEECCCC
T ss_conf             76433799982699983035256566776566667517999830056567868999556763456861367489812675


Q ss_pred             ------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------~  278 (815)
                                                                                  .
T Consensus       321 Ra~lP~~~~~d~Dt~piGlalD~ss~~~v~~p~~g~~~~~plP~l~vL~~~G~L~~ww~~~  381 (381)
T d1xipa_         321 RAVLPISEETDKDTNPIGVAVDVVTSGTILEPCSGVDTIERLPLVYILNNEGSLQIVGLFH  381 (381)
T ss_dssp             CCBCCBCTTTCCBCCEEEEEEECSCCC--------------CCEEEEEETTSEEEEEEEEC
T ss_pred             CEEECCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEEEEEEC
T ss_conf             3040357788876531589997124752315788822278998899996987899999879

>d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: PepX catalytic domain-like
domain: Alpha-amino acid ester hydrolase
species: Xanthomonas citri [TaxId: 346]

Probab=100.00  E-value=0  Score=28727.55  Aligned_cols=1  Identities=0%  Similarity=-1.024  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~p~~p~~~~~~~~~~~~~~~~~~~~v~i~~rDG~~L~~~v~~P~~~~~~P~il~~~pYg~~~~~~~~~~~~~~~~~~~~   80 (381)
T d1mpxa2           1 TSPMTPDITGKPFVAADASNDYIKREVMIPMRDGVKLHTVIVLPKGAKNAPIVLTRTPYDASGRTERLASPHMKDLLSAG   80 (381)
T ss_dssp             CCTTSCSSCSSCCCCCCTTCSEEEEEEEEECTTSCEEEEEEEEETTCCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGG
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             98989999998777776555866988999899998999999996899973089997567789765656665444320068


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~a~~Gy~vv~~d~RG~g~S~G~~~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~  160 (381)
T d1mpxa2          81 DDVFVEGGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMA  160 (381)
T ss_dssp             GHHHHHTTCEEEEEECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHH
T ss_pred             HHHHHHCCCEEEEEECCCCCCCCCCEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHH
T ss_conf             99999689799998137657889853315201210132006789999999998753588576504560365778889888


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 a~~~~~~l~a~v~~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (381)
T d1mpxa2         161 LTNPHPALKVAVPESPMIDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLE  240 (381)
T ss_dssp             HTSCCTTEEEEEEESCCCCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGG
T ss_pred             HHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCC
T ss_conf             75356521043232454252010243468335322289998642110366112110135677787525654424023144


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~d~~w~~~s~~~~~~~~~i~vP~l~i~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~LviGPw~H~~~  320 (381)
T d1mpxa2         241 QLPWWHKLTEHAAYDAFWQEQALDKVMARTPLKVPTMWLQGLWDQEDMWGAIHSYAAMEPRDKRNTLNYLVMGPWRHSQV  320 (381)
T ss_dssp             GSHHHHHHHHTCSSCHHHHTTCHHHHHHTSCCCSCEEEEEETTCSSCSSHHHHHHHHHGGGCTTSSSEEEEEESCCTTGG
T ss_pred             CCHHHHHHHHCCCCCCHHHHCCCHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
T ss_conf             46177887527875301232690266652345674389842555775653899999999842666783699936767787


Q ss_pred             ------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------~  278 (815)
                                                                                  -
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~l~wFD~~LKg~~~~~~~ppV~~~~~G~~~Wr~~~~W  381 (381)
T d1mpxa2         321 NYDGSALGALNFEGDTARQFRHDVLRPFFDQYLVDGAPKADTPPVFIYNTGENHWDRLKAW  381 (381)
T ss_dssp             GSCCSEETTEECSSCHHHHHHHHTHHHHHHHHHSTTCCCCCCCSEEEEETTTTEEEEESSS
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCC
T ss_conf             6677767766665101134689999999999727999999999889997899968407979

>d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Fungal alpha-amylases
species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]

Probab=100.00  E-value=0  Score=28726.54  Aligned_cols=1  Identities=0%  Similarity=0.171  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~p~~W~~~~iY~i~~~~F~~~~~~~~~~~~~~~~~~~gGd~~gi~~~Ldyl~~LGv~~I~L~Pi~~~~~~~~~~~~~~~   80 (381)
T d2guya2           1 ATPADWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYH   80 (381)
T ss_dssp             CCHHHHTTCCEEEECHHHHCBTTCCSSCCCCGGGTCCCCBCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCCTT
T ss_pred             CCCCCCCCCEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf             99702147829999755211799988877787667647848999999699998779998996988778766688899998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 gY~~~d~~~vd~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (381)
T d2guya2          81 GYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQ  160 (381)
T ss_dssp             SCSEEEEEEECTTSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCEEBCGGGCCGGGSBSCCSGGGBCCSCBCCCTTCHHH
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC
T ss_conf             75046646655677877899999989886063213100124666545765222334689875431001344445444554


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~w~~~~giDGfR~D~~~~~~~~f~~~~~~~~~~~~igE~~~~~~~~~~  240 (381)
T d2guya2         161 VEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNKAAGVYCIGEVLDGDPAYTC  240 (381)
T ss_dssp             HHHSBEECSSEEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCGGGHHHHHHHHTSEEEECCCCSCHHHHG
T ss_pred             CCEEECCCCCCCCCHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHCCHHHHHHHHHCCEEEEEEECCCCCHHHHC
T ss_conf             32023257765510103355889999998765103113555103403754589999764321402563110364075540


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~enHD~~R~~s~~~~~~~~~~a~~~l~t  320 (381)
T d2guya2         241 PYQNVMDGVLNYPIYYPLLNAFKSTSGSMDDLYNMINTVKSDCPDSTLLGTFVENHDNPRFASYTNDIALAKNVAAFIIL  320 (381)
T ss_dssp             GGGGTSSEEBCHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHSSCGGGSEECSCCTTSCCGGGTCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             23324444224066799999996267761778999998874067643000101676752210225889999999999998


Q ss_pred             ------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------~  278 (815)
                                                                                  .
T Consensus       321 ~pGiP~iy~G~E~g~~g~~~~~~r~~~~~~~~~~~~~l~~~i~~L~~lR~~~~~~~~~~~~  381 (381)
T d2guya2         321 NDGIPIIYAGQEQHYAGGNDPANREATWLSGYPTDSELYKLIASANAIRNYAISKDTGFVT  381 (381)
T ss_dssp             SSSEEEEETTGGGTCCCCSTTTTCCCGGGGTCCTTSHHHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred             CCCCCEEECCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             0897298736002757998811001466556767879999999999997488641699879

>d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Fungal alpha-amylases
species: Aspergillus niger, acid amylase [TaxId: 5061]

Probab=100.00  E-value=0  Score=28725.24  Aligned_cols=1  Identities=0%  Similarity=-0.494  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~W~~~~iY~i~~~~F~~~~~~~~~~~~~~~~~~~gG~~~g~~~kLdyL~~LGv~~I~L~Pi~~~~~~~~~~~~~~~   80 (381)
T d2aaaa2           1 LSAASWRTQSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYH   80 (381)
T ss_dssp             CCHHHHTTCCEEECCHHHHCCTTCCSCCCCCGGGCSCCCCCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCSTT
T ss_pred             CCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf             98034488727999838106899998877777767758938999999799999769998994987668765788998875


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 gY~~~d~~~id~~~Gt~~~~k~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (381)
T d2aaaa2          81 GYWQQKIYDVNSNFGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHPYCLITDWDNLTM  160 (381)
T ss_dssp             SCSEEEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCBSSCGGGCCGGGSBSCCSGGGBCCCCBCCCTTCHHH
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             56646543311024988999999998866311110023445433456776555333587554345588766456445555


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~pdln~~np~v~~~~~~~~~~~~~~~giDGfR~D~~~~~~~~f~~~~~~~~~~~~igE~~~~~~~~~~  240 (381)
T d2aaaa2         161 VEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRIDSVLEVQPDFFPGYNKASGVYCVGEIDNGNPASDC  240 (381)
T ss_dssp             HHHSBEECSSSEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEESCSTTSCGGGHHHHHHHHTSEEEECCCCSCHHHHG
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf             67775678666675313233255667766644204221322000001233307899998744532233530379813321


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~nHD~~R~~~~~~~~~~~~~a~a~llt  320 (381)
T d2aaaa2         241 PYQKVLDGVLNYPIYWQLLYAFESSSGSISNLYNMIKSVASDCSDPTLLGNFIENHDNPRFAKYTSDYSQAKNVLSYIFL  320 (381)
T ss_dssp             GGGGTSSEEBCHHHHHHHHHHHSSTTSCHHHHHHHHHHHHHHCSCGGGSEECSCCTTSCCGGGTCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             11344333002157899999985487307899999974331157721103435667721041246989999999999997


Q ss_pred             ------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------~  278 (815)
                                                                                  +
T Consensus       321 ~pG~P~iy~G~E~g~~g~~~p~~r~~~~~~~~~~~~~l~~~i~~L~~lRk~~~al~~~~~~  381 (381)
T d2aaaa2         321 SDGIPIVYAGEEQHYAGGKVPYNREATWLSGYDTSAELYTWIATTNAIRKLAIAADSAYIT  381 (381)
T ss_dssp             SSSEEEEETTTTTTCCCCTTTTTCCCGGGGTTCTTCHHHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHCCCCCC
T ss_conf             0797675747214878998834111367677746769999999999997049453279879

>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=100.00  E-value=0  Score=28726.74  Aligned_cols=1  Identities=0%  Similarity=0.104  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~pi~~~~~~~~Y~~~i~iGtpliiDTGSs~~Wvpc~~c~~~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~   80 (381)
T d1t6ex_           1 LPVLAPVTKDPATSLYTIPFHDGASLVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPAPGCPAPSCGSDKHDKPC   80 (381)
T ss_dssp             CCEEEEEEECTTTCCEEEEEETTEEEEEETTCCCEEECCCTTCCCCCCBTTSHHHHHHHSSCCTTCCCCCC------CBC
T ss_pred             CCEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             98798112269988599999769866998998811460678877766562780264235757888887666678778888


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~Y~~Gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGi~Glg~~~~s~~~ql~~~~~~  160 (381)
T d1t6ex_          81 TAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKV  160 (381)
T ss_dssp             EECCBCTTTCCBCCEEEEEEEEEEEEESSSSEEEEEEEEEEEEECCGGGGTTSCTTEEEEEECSSSTTSHHHHHHHHHTC
T ss_pred             CEEEEEECCCCEEEEEEEEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCC
T ss_conf             60677838998888799999999653223552025885112202435665444667630210588873157887651376


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~fsl~l~~~~~~~~~~~~g~~~~~~~~g~~~~~pi~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~i~DTGtt~  240 (381)
T d1t6ex_         161 ANRFLLCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRLPY  240 (381)
T ss_dssp             CSEEEEECCSSSCEEEEESCCSCSCHHHHTTCCEEECBCCTTCCSCEECEEEEEETTEECCCCTTCSCTTCEEECSSCSS
T ss_pred             CEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEEECCEEECCCCCCCCCCCEEEECCCCE
T ss_conf             44899554777654237603656633357833777654157874257888778518846615755456763687427734


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~f~~~~~~~i~~~~y~~~  320 (381)
T d1t6ex_         241 VLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVD  320 (381)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHC-------CCEECCCTTCSCEEEGGGCCEETTEECCCCEEEEETTSCEEEECHHHHEEE
T ss_pred             EECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCEEEECHHHEEEE
T ss_conf             97778999999999988751445664211101466677522622565555565431461799975996799770473899


Q ss_pred             ------------------------------------------------------------C
Q ss_conf             ------------------------------------------------------------9
Q 003496          278 ------------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------------~  278 (815)
                                                                                  -
T Consensus       321 ~~~~~~Cl~i~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfA~~~~~~~~~~~  381 (381)
T d1t6ex_         321 VKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRLPHFTGCGGL  381 (381)
T ss_dssp             EETTEEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEEECCTTCCSCC-
T ss_pred             ECCCCEEEEEEECCCCCCCCCCCCCEEECHHHHCCEEEEEECCCCEEEEEECCCCCCCCCC
T ss_conf             0798489999832556677888973898979848689999899999999877888887688

>d1vbga3 d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N-terminal domain {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Pyruvate phosphate dikinase, N-terminal domain
domain: Pyruvate phosphate dikinase, N-terminal domain
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=0  Score=28659.36  Aligned_cols=1  Identities=0%  Similarity=-1.523  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~f~~~~~~~~~~~~~lvGGK~AnLgel~~~G~pVP~GFvITt~Ay~~Fi~~n~~l~~~L~~~I~~~l~~~~~~~~   80 (380)
T d1vbga3           1 KKRVFHFGKGKSEGNKTMKELLGGKGANLAEMASIGLSVPPGFTVSTEACQQYQDAGCALPAGLWAEIVDGLQWVEEYMG   80 (380)
T ss_dssp             CCSEEEEETTEESSCTTCTTTTHHHHHHHHHHHHTTCCCCCEEEECHHHHHHHHHTTSCCCTTHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             98899879986568814475072889989999978599999888549999999980764658799999999987787633


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~e~~a~~s~a~~~~~~~~~~~~~~~~~~~~~~~~  160 (380)
T d1vbga3          81 ATLGDPQRPLLLSVRSGAAVSMPGMMDTVLNLGLNDEVAAGLAAKSGERFAYDSFRRFLDMFGNVVMDIPRSLFEEKLEH  160 (380)
T ss_dssp             CBTTCSSSBCCEEEECCCSSCCTTCCCCEEEETCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHH
T ss_conf             22356421011001232034566767787751352488998863231101766555553101100034024567788888


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~q~m~~~~~~gv~ft~~p~~~~~~~~~I~a~~Glg~~v  240 (380)
T d1vbga3         161 MKESKGLKNDTDLTASDLKELVGQYKEVYLSAKGEPFPSDPKKQLELAVLAVFNSWESPRAKKYRSINQITGLRGTAVNV  240 (380)
T ss_dssp             HHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHHHSSCCCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTCCCCCCCCEEE
T ss_pred             HHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEECCCCCCCCCCCCCEEECCCCCCCEEE
T ss_conf             88762304543136987566788998876650487422226888887654212102477100156502641330124245


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 v~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~La~l~~~iE~~yg~P  320 (380)
T d1vbga3         241 QCMVFGNMGNTSGTGVLFTRNPNTGEKKLYGEFLVNAQGEDVVAGIRTPEDLDAMKNLMPQAYDELVENCNILESHYKEM  320 (380)
T ss_dssp             EECCCSCSSTTCEEEEEESSCTTTCCSSCEEEEEESSCHHHHHHTSCCCEETHHHHHHCHHHHHHHHHHHHHHHHHHCSC
T ss_pred             EEEEECCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             56663388737667613443444675213322112555545300044366531022238899999999999999981985


Q ss_pred             -----------------------------------------------------------C
Q ss_conf             -----------------------------------------------------------9
Q 003496          278 -----------------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------------~  278 (815)
                                                                                 +
T Consensus       321 qDIEWA~~dg~L~ILQaRPv~~~~~aa~~~~~d~~~~~~i~~~~~~~~~~p~~~~~~l~~  380 (380)
T d1vbga3         321 QDIEFTVQENRLWMLQCRTGKRTGKSAVKIAVDMVNEGLVEPRSAIKMVEPGHLDQLLHP  380 (380)
T ss_dssp             EEEEEEEETTEEEEEEEEECCCCHHHHHHHHHHHHHTTSSCHHHHGGGSCHHHHHHTTSC
T ss_pred             CEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHCCC
T ss_conf             105999989989999744787557879999999988599688999873898577461399

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=0  Score=28658.92  Aligned_cols=1  Identities=0%  Similarity=0.769  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~t~~~h~~~~~dp~ga~~~PI~~sstf~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LE~~~~a~~fsSGMaAisal   80 (380)
T d1ibja_           1 ASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAV   80 (380)
T ss_dssp             CCHHHHHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHH
T ss_pred             CCHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHH
T ss_conf             97767624279999999896188557766461887766895140898868999999999971986188603199999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 l~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~  160 (380)
T d1ibja_          81 THLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAH  160 (380)
T ss_dssp             HTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred             HHHHCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf             98627998799974033554012222110454212235751678877775067618996142443223445899999998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~g~~~vVDnT~atP~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rg  240 (380)
T d1ibja_         161 AQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRG  240 (380)
T ss_dssp             TTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHH
T ss_pred             HCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC
T ss_conf             75980896243004300255455898999606520256667554433344126777787630466773787779999842


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 l~Tl~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~~~~a~~f~d~l~l~~~a~  320 (380)
T d1ibja_         241 IKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAV  320 (380)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEECS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf             31445538889888899999997389866996056456864211222456542111111127999999998389175741


Q ss_pred             -----------------------------------------------------------C
Q ss_conf             -----------------------------------------------------------9
Q 003496          278 -----------------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------------~  278 (815)
                                                                                 -
T Consensus       321 SlG~~~SLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlE~~eDLi~Dl~qAl~~l~~  380 (380)
T d1ibja_         321 SFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTFPL  380 (380)
T ss_dssp             CCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCSSCHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCCCCCCCCHHHHHHCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf             568766130485223012089999997697939599983409999999999999976689

>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]

Probab=100.00  E-value=0  Score=28655.80  Aligned_cols=1  Identities=0%  Similarity=-0.560  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~LF~P~~ig~~~lkNRiv~~pm~~~~~~~G~p~~~~~~~y~~rA~Ggglii~~~~~V~~~~~~~~~~~~~~~d~~i~   80 (380)
T d1q45a_           1 SNETLFSSYKMGRFDLSHRVVLAPMTRCRALNGVPNAALAEYYAQRTTPGGFLISEGTMVSPGSAGFPHVPGIYSDEQVE   80 (380)
T ss_dssp             CCCCTTSCEEETTEEESCSEEECCCCCCCSGGGCCCHHHHHHHHHTCCTTCEEEEEEEESSTTCCCSTTCCBCSSHHHHH
T ss_pred             CCCCCCCCCCCCCEEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCEEECCCCCCCCCCCCCCCHHHHH
T ss_conf             98635898118999856875884438883889979999999999998497799974508877757899986217779988


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~k~l~~~vh~~g~~~~~QL~H~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~  160 (380)
T d1q45a_          81 AWKQVVEAVHAKGGFIFCQLWHVGRASHAVYQPNGGSPISSTNKPISENRWRVLLPDGSHVKYPKPRALEASEIPRVVED  160 (380)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEECCTTSCCGGGSGGGCCCEESSSCCCCTTTCCEECTTSCEECCCCCEECCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEECCHHHHHHHHHH
T ss_conf             99999999873576258875307866665545567787666557666677224267755568998843787889999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 f~~aA~~A~~aGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~lEii~aIr~~vg~~~~~~~~~~~~d~~~  240 (380)
T d1q45a_         161 YCLSALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAIDHLD  240 (380)
T ss_dssp             HHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGG
T ss_pred             HHHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf             99999999982865366000211367654165335576655764231036677779988887015672278752022366


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~Gg~~~~~  320 (380)
T d1q45a_         241 ATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRMAYNGTFMSSGGFNKEL  320 (380)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHTTSSCCSEEEEECCC---------------CHHHHHHHHHHHHSCSCEEEESSCCHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCHHH
T ss_conf             42133123333210256676653135632477416754433334566567625667889988652488589679989999


Q ss_pred             -----------------------------------------------------------C
Q ss_conf             -----------------------------------------------------------9
Q 003496          278 -----------------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------------~  278 (815)
                                                                                 +
T Consensus       321 ae~~l~~G~~DlV~~gR~liaDPdlv~K~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  380 (380)
T d1q45a_         321 GMQAVQQGDADLVSYGRLFIANPDLVSRFKIDGELNKYNRKTFYTQDPVVGYTDYPFLAP  380 (380)
T ss_dssp             HHHHHHTTSCSEEEESHHHHHCTTHHHHHHTTCCCCCCCGGGSSCCCSSTTTTCSCCCCC
T ss_pred             HHHHHHCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             999998699632455299887924999996299988887466458999898577789897

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=0  Score=28655.19  Aligned_cols=1  Identities=100%  Similarity=3.493  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      |                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~G   80 (380)
T d2gmha1           1 CKVPRITTHYTIYPRDQDKRWEGVNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSG   80 (380)
T ss_dssp             CCSCCCCCCTTTSCTTSCGGGSSCCCCCCEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
T ss_conf             98885335642245335754444574201363888998977899999999985213413999799981788899874535


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 gvl~~~~l~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~  160 (380)
T d2gmha1          81 ACLDPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYP  160 (380)
T ss_dssp             CEECTHHHHHHCTTHHHHTCCCCEECCEEEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEET
T ss_pred             CCCCHHHHHHHCCCHHHHCCCCCCCEECCEEEEEECCCCCCCCCCCCHHCCCCCCEEEHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             16668899987630344355301320012279963366466545670110245551320467888999987631543443


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~~~l~~~~~~~~G~~sip  240 (380)
T d2gmha1         161 GYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQGGFQSIP  240 (380)
T ss_dssp             TCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCGGGGCC
T ss_pred             ECCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             01001344225773110122332323334556555643003463799956178866288876542103665545666665


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~l~~~G~lLVGDAAG~vnP~~g~GI~~Am~SG~lAAeai~~al~~~~~~~~~~~~~~~~y~~~~~~s~~~~eL~~~rn~~  320 (380)
T d2gmha1         241 KLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKTIGLHVTEYEDNLKNSWVWKELYSVRNIR  320 (380)
T ss_dssp             CCEETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHTCCCCCCSSSSCCCTHHHHHHHTSHHHHHHHHTTTTT
T ss_pred             CCCCCCEEEEECCCCCCCHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             34069806873354313512148753220237889999999997188643103444556889987628999999863877


Q ss_pred             -----------------------------------------------------------C
Q ss_conf             -----------------------------------------------------------9
Q 003496          278 -----------------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------------~  278 (815)
                                                                                 +
T Consensus       321 ~~~~~~~g~~~g~~~~~~~~~~~~g~~p~tl~~~~~d~~~l~~~~~~~~i~y~~~d~~~~  380 (380)
T d2gmha1         321 PSCHGILGVYGGMIYTGIFYWIFRGMEPWTLKHKGSDSDQLKPAKDCTPIEYPKPDGQIS  380 (380)
T ss_dssp             GGGGSTTTHHHHHHHHHHHTTTTTTCCSCCCCCCSCGGGCCCCGGGSCCCCCCCCCSSSS
T ss_pred             HHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             898752108999999999999857898701789997889988798589998999989169

>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein MW1667 (SA1546)
domain: Hypothetical protein MW1667 (SA1546)
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=0  Score=28653.30  Aligned_cols=1  Identities=0%  Similarity=-0.960  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~i~fd~dGVll~~~~~~D~s~ltv~~ll~s~e~Lg~~~~i~~~k~~~~t~~~i~~~~~~~~~il~~~k~~g~n~~~dl   80 (380)
T d1qyia_           1 MKKILFDVDGVFLSEERCFDVSALTVYELLMDKCYLGLHSHIDWETLTDNDIQDIRNRIFQKDKILNKLKSLGLNSNWDM   80 (380)
T ss_dssp             CCEEEECSBTTTBCSHHHHHHHHHHHHHHHHCTTTTCCSCCCCGGGCCHHHHHHHHHHHHTTTHHHHHHHHTTCCCHHHH
T ss_pred             CCEEEEECCCEEECCEEECCHHHHHHHHHHHCHHHCCCCEEEECCCCCCHHHHHHEEEEECCHHHHHHHHHCCCCHHHHH
T ss_conf             96699937807982433203676658887612011256404533765510043311133053246676662688806999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~k~~~~~~~~~~~~~~~~~~~a~~~~~  160 (380)
T d1qyia_          81 LFIVFSIHLIDILKKLSHDEIEAFMYQDEPVELKLQNISTNLADCFNLNEQLPLQFLDNVKVGKNNIYAALEEFATTELH  160 (380)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHCSSCHHHHHTTSGGGCSSCCCCCTTTTHHHHTTCCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCHHHCC
T ss_conf             99999999998774348985778987775436408999875365556775148888765324553144755521376528


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~a~~~~r~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~p~~~v~~~l~~lk~aGi~v~i~Tg~  240 (380)
T d1qyia_         161 VSDATLFSLKGALWTLAQEVYQEWYLGSKLYEDVEKKIARTTFKTGYIYQEIILRPVDEVKVLLNDLKGAGFELGIATGR  240 (380)
T ss_dssp             CSCCGGGSTTCHHHHHHHHHHHHHHHHHHHHHHHHCSCCSCSSCCCTTTTCCBSSCHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             75888999986899999999999877220223345533156675423013565334363999999999879959998899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~a~~il~~lgl~~~F~~~~i~~~~d~~~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~k~~iv~~~~~~~~~~~~  320 (380)
T d1qyia_         241 PYTETVVPFENLGLLPYFEADFIATASDVLEAENMYPQARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFI  320 (380)
T ss_dssp             CHHHHHHHHHHHTCGGGSCGGGEECHHHHHHHHHHSTTSCCCCTTSTHHHHHHHHCCCGGGHHHHHHCCTTCSCTTTEEE
T ss_pred             CHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf             79999999998199534785058744133311220331102369986999999998088778899999973899886999


Q ss_pred             -----------------------------------------------------------C
Q ss_conf             -----------------------------------------------------------9
Q 003496          278 -----------------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------------~  278 (815)
                                                                                 .
T Consensus       321 vGD~~~D~~aak~Ag~~~Igv~~G~~g~~~~~el~~~~AD~ii~~~~el~~il~~l~~~~  380 (380)
T d1qyia_         321 VGDSLADLLSAQKIGATFIGTLTGLKGKDAAGELEAHHADYVINHLGELRGVLDNLLEHH  380 (380)
T ss_dssp             EESSHHHHHHHHHHTCEEEEESCBTTBGGGHHHHHHTTCSEEESSGGGHHHHHSCTTTTC
T ss_pred             ECCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCEEECCHHHHHHHHHHHHHCC
T ss_conf             889989999999879988999458888643778976799999889999999999998509

>d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum [TaxId: 1521]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase CelA
species: Clostridium cellulolyticum [TaxId: 1521]

Probab=100.00  E-value=0  Score=28652.25  Aligned_cols=1  Identities=0%  Similarity=-1.026  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~g~nlgn~lda~~~~~~~~~~~~e~~Wgnp~~t~~~i~~ik~~Gfn~vRi   80 (380)
T d1edga_           1 MYDASLIPNLQIPQKNIPNNDGMNFVKGLRLGWNLGNTFDAFNGTNITNELDYETSWSGIKTTKQMIDAIKQKGFNTVRI   80 (380)
T ss_dssp             CCCGGGSCCCCCCCCCCCCSHHHHHHHHHCSEEECTTSTTCCCCSSCCSGGGHHHHTTCSCCCHHHHHHHHHHTCCEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf             95434576564465566888789999864784623867036887656678987776699616699999999869987997


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 Pv~w~~~~~~~~~~i~~~~l~~v~~vV~~a~~~Gl~VIldlHh~~~~~~~~~~~~~~~~~~~~~~~~~W~qiA~~fkd~~  160 (380)
T d1edga_          81 PVSWHPHVSGSDYKISDVWMNRVQEVVNYCIDNKMYVILNTHHDVDKVKGYFPSSQYMASSKKYITSVWAQIAARFANYD  160 (380)
T ss_dssp             CCCCGGGEETTTTEECHHHHHHHHHHHHHHHTTTCEEEEECCSCBCTTTSBCSSGGGHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             34078826899885298999999999999997699799845667887766678656757799999999999887606898


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~l~fel~NEP~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~IR~~~~~n~~r~i~v~g~~~~~~~~~~~~~~~p~  240 (380)
T d1edga_         161 EHLIFEGMNEPRLVGHANEWWPELTNSDVVDSINCINQLNQDFVNTVRATGGKNASRYLMCPGYVASPDGATNDYFRMPN  240 (380)
T ss_dssp             TTEEEECCSSCCCTTSTTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHHHTCGGGGTSCEEEECGGGCHHHHHSTTCCCCC
T ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHCCCC
T ss_conf             66999621344446786544532223108999999999999999999984457886089857886477543000111554


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 d~~~~~~~li~s~H~Y~p~~f~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~giPviiGEfG~~~~~~~~~r~  320 (380)
T d1edga_         241 DISGNNNKIIVSVHAYCPWNFAGLAMADGGTNAWNINDSKDQSEVTWFMDNIYNKYTSRGIPVIIGECGAVDKNNLKTRV  320 (380)
T ss_dssp             CCTTCCSCEEEEEECCCSHHHHTSCGGGTCCCCCCTTCHHHHHHHHHHHHHHHHHTGGGTCCEEEEEECCCCSSCHHHHH
T ss_pred             CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHH
T ss_conf             45677887799975157643566667767877655576113899999999999988754962999623376789858999


Q ss_pred             -----------------------------------------------------------C
Q ss_conf             -----------------------------------------------------------9
Q 003496          278 -----------------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------------~  278 (815)
                                                                                 .
T Consensus       321 ~~~~~~~~~a~~~gi~~~~Wdn~~~~~~~~~fg~~dr~~~~w~~p~~~~~~~~~~~g~~~  380 (380)
T d1edga_         321 EYMSYYVAQAKARGILCILWDNNNFSGTGELFGFFDRRSCQFKFPEIIDGMVKYAFGLIN  380 (380)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCCCCCSSSSCCCCCEETTTTEESSHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf             999999999998699279987998888866745153788865889999999998648999

>d1elja_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: D-maltodextrin-binding protein, MBP
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=0  Score=28650.96  Aligned_cols=1  Identities=0%  Similarity=-0.793  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~k~~eg~i~~W~~~~~~~~~~~~~~~~~F~~~~p~I~v~~~~~~~~~~~l~~~~~~g~~pDi~~~~~~~~~~~~~~g~l~   80 (380)
T d1elja_           1 MKIEEGKVVIWHAMQPNELEVFQSLAEEYMALCPEVEIVFEQKPNLEDALKAAIPTGQGPDLFIWAHDWIGKFAEAGLLE   80 (380)
T ss_dssp             CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCTTEEEEEEECTTHHHHHHHHTTTTCSCSEEEEEGGGHHHHHHTTCBC
T ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCC
T ss_conf             98766389999589803899999999999987839799998689999999999976999819999937799999879963


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~l~~~~~~~~~~~~~~~~~~~~~~dG~~y~~P~~~~~~~l~ynkd~~~~~P~T~~e~~~~~~~l~~~~~~~~~~~~~~~~  160 (380)
T d1elja_          81 PIDEYVTEDLLNEFAPMAQDAMQYKGHYYALPFAAETVAIIYNKEMVSEPPKTFDEMKAIMEKYYDPANEKYGIAWPINA  160 (380)
T ss_dssp             CCTTTCCHHHHTTBCHHHHHHTEETTEECEEEEEEEECEEEEETTTCSSCCSSHHHHHHHHHHHCBGGGTBCSCBCCCSH
T ss_pred             CCCHHHHHCCCCCCCHHHHHHEEECCEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             08665400221112166664103454301122222103566666676421332899999999986044771454311454


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~  240 (380)
T d1elja_         161 YFISAIAQAFGGYYFDDKTEQPGLDKPETIEGFKFFFTEIWPYMAPTGDYNTQQSIFLEGRAPMMVNGPWSINDVKKAGI  240 (380)
T ss_dssp             HHHHHHHTTTSCCSEETTTTEECTTSHHHHHHHHHHHHHTGGGSCSCCCHHHHHHHHHTTSSSEEEECGGGHHHHHHTTC
T ss_pred             CCCCHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHC
T ss_conf             32201120478500033454467798899999999987443233545750465666405761155244288999875430


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~s~~~e~A~~fi~~l~s~e~~~~~~~~~~g~~P~~~~~~~~~~~~~~~  320 (380)
T d1elja_         241 NFGVVPLPPIIKDGKEYWPRPYGGVKLIYFAAGIKNKDAAWKFAKWLTTSEESIKTLALELGYIPVLTKVLDDPEIKNDP  320 (380)
T ss_dssp             CEEEECCCCEEETTEEECCCCEEEEEEEEEBTTCSCHHHHHHHHHHHHHCHHHHHHHHHHHCCBCCBGGGGGCHHHHTCH
T ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCHHHHCCH
T ss_conf             26644458878776666652211000011244674599999999986326999999998348888777788598755193


Q ss_pred             -----------------------------------------------------------C
Q ss_conf             -----------------------------------------------------------9
Q 003496          278 -----------------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------------~  278 (815)
                                                                                 .
T Consensus       321 ~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~g~~~~d~~~al~~~~~~i~~~~k  380 (380)
T d1elja_         321 VIYGFGQAVQHAYLMPKSPKMSAVWGGVDGAINEILQDPQNADIEGILKKYQQEILNNMQ  380 (380)
T ss_dssp             HHHHHHHHHHTCEECCCCTTHHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             899999999518207889878999999999999997789992099999999999999529

>d1lj5a_ e.1.1.1 (A:) Plasminogen activator inhibitor-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Serpins
superfamily: Serpins
family: Serpins
domain: Plasminogen activator inhibitor-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=28578.91  Aligned_cols=1  Identities=0%  Similarity=-0.593  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~F~~~l~~~l~~~~~~~N~v~SP~si~~~La~l~~Ga~g~T~~el~~~L~~~~~~~~~~~~~~~~~~   80 (379)
T d1lj5a_           1 VHHPPSYVAHLASDFGVRVFQQVAQASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGMAPALRHLYK   80 (379)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHSTTBCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHTSCTTSTTHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             98976888888849999999998723969869987899999999999867728999999970999873778999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~l~~~~~~~~l~~an~l~v~~~~~~~~~f~~~~~~~y~~~~~~vdF~~~~~a~~~IN~wv~~~T~g~I~~~~~~~~l~~~  160 (379)
T d1lj5a_          81 ELMGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIINDWVKTHTKGMISNLLGKGAVDQL  160 (379)
T ss_dssp             HHHCGGGSSEEEEEEEEEEETTSCCCTTHHHHHHHHHSCCCEEECTTSHHHHHHHHHHHHHHTTTTSCCCSSCTTSSCTT
T ss_pred             HHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             86175554520024478773567245788998787636600135555268999999999996049932331376678965


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 t~~~lvna~~f~~~W~~~F~~~~t~~~~F~~~~~~~~~V~~M~~~~~~~~~~~~~~~~~~~~vv~Lp~~~~~~sm~iilP  240 (379)
T d1lj5a_         161 TRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAP  240 (379)
T ss_dssp             CCEEEEEEEEEEEEBSSCCCCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEBTTSSEEEEEEEE
T ss_pred             CEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEECC
T ss_conf             40466721799511347677355533210346785576112354151205885036666058999603798478999647


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~v~l~lPkf~i~~~~dl~~~L~~lGl~~~F~~~~adfs~is~~~~l~vs~v  320 (379)
T d1lj5a_         241 YEKEVPLSALTNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQFQADFTSLSDQEPLHVAQA  320 (379)
T ss_dssp             SSTTSCTHHHHTTCCHHHHHHHHHHCEEEEEEEEEECEEEEEEEECHHHHHHTTCCGGGCTTTCCCTTTCSSSCCCEEEE
T ss_pred             CCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEEEEEEEEECHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             76666367776530077788777634313308999999984100277878867972235765565223678898077656


Q ss_pred             ----------------------------------------------------------C
Q ss_conf             ----------------------------------------------------------9
Q 003496          278 ----------------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------------~  278 (815)
                                                                                +
T Consensus       321 ~hk~~iev~E~G~~a~a~t~~~~~~~~~~~~f~~drPF~f~I~~~~t~~~lf~G~v~~P  379 (379)
T d1lj5a_         321 LQKVKIEVNESGTVASSSTAVIVSARMAPEEIIMDRPFLFVVRHNPTGTVLFMGQVMEP  379 (379)
T ss_dssp             EEEEEEEECSSEEEEEEEEEEEESSCCCCCCCCBCCEEEEEEEETTTTEEEEEEEEECC
T ss_pred             EEEEEEEECCCCEEECCCCEEEECCCCCCCEEEEECCEEEEEEECCCCCEEEEEEECCC
T ss_conf             88999998787145022322542268999879940998999999999968999995398

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=100.00  E-value=0  Score=28576.95  Aligned_cols=1  Identities=0%  Similarity=-0.295  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLV   80 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSSTTCCTTCSHHHHHCGGGHHHHHHHTCEESCCCCCCCC
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99732589989688999999999658893999936899987522346222023346664445434566333566554555


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~r~~~~d~~~~~~~~~~~~~~~~~~~~~~~  160 (379)
T d2f5va1          81 VDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTHWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKA  160 (379)
T ss_dssp             CCCSCTTSCCCSSCCCCTTCCTTCCTTSCCTTCEECCSTTGGGGTCCCBCCCCCGGGSCCSSSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCEEECCCCCCHHHHHHCCCCCHHHHCCCCCCCCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf             66777777667876761688821214442454122303799846216683458988863012457776688686025564


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~  240 (379)
T d2f5va1         161 ESYFQTGTDQFKESIRHNLVLNKLAEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVA  240 (379)
T ss_dssp             HHHHTEESCTTTTCHHHHHHHHHHHHHTTTSSCCEECCEEEEEEETTEEEECCHHHHCCCCCEEETTEEEEEEEEECSEE
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHCCHHHHCCCCCEEECCCE
T ss_conf             44454899999877775277877553445656765444210047888788589886343310433776489999956999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~~~~~~~~~~~~~~~~~~~g~h~mG~~~~  320 (379)
T d2f5va1         241 CERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELLPSLGSHRMGFDEK  320 (379)
T ss_dssp             EEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHHTTSSCCSSCCTTSCCSSSTTTTBTCBCSCTT
T ss_pred             EEEEEEECCCCEEEEEEEEECCCCEEEEEECEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf             99999818999899999997999979999650899655766898997322002223345566753166545044566888


Q ss_pred             ----------------------------------------------------------C
Q ss_conf             ----------------------------------------------------------9
Q 003496          278 ----------------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------------~  278 (815)
                                                                                .
T Consensus       321 ~~~~vvd~~~~v~g~~nlyv~d~sv~p~~~~~nPt~t~~alA~r~a~~i~~~~~~~~~~  379 (379)
T d2f5va1         321 EDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNFTPSPFT  379 (379)
T ss_dssp             TTTCSBCTTCBBTTCSSEEECSGGGCCSCCCSCSHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred             CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             88724788975213289797388556775656818889999999999999862458999

>d3sila_ b.68.1.1 (A:) Salmonella sialidase {Salmonella typhimurium, strain lt2 [TaxId: 90371]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Sialidases
family: Sialidases (neuraminidases)
domain: Salmonella sialidase
species: Salmonella typhimurium, strain lt2 [TaxId: 90371]

Probab=100.00  E-value=0  Score=28574.33  Aligned_cols=1  Identities=0%  Similarity=-1.723  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~yRiP~L~~~~~G~llA~~e~R~~~~~d~~~~div~~rS~DgGkTWs~~   80 (379)
T d3sila_           1 EKSVVFKAEGEHFTDQKGNTIVGSGSGGTTKYFRIPAMCTTSKGTIVVFADARHNTASDQSFIDTAAARSTDGGKTWNKK   80 (379)
T ss_dssp             CEEEEECTTCCCCBCTTSCBCCCSBGGGBCCEEEEEEEEECTTCCEEEEEEEESSCSCSSSCEEEEEEEESSSSSCCEEE
T ss_pred             CCCEEEEECCCCCCCCCCCEEEECCCCCCEEEEECCEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCC
T ss_conf             94089984775715889858996479986255746689997999599999667789887777519999913796589999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~i~~~~~~~~~~~~~~p~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~g~tw~~p~~~~~~  160 (379)
T d3sila_          81 IAIYNDRVNSKLSRVMDPTCIVANIQGRETILVMVGKWNNNDKTWGAYRDKAPDTDWDLVLYKSTDDGVTFSKVETNIHD  160 (379)
T ss_dssp             EEECCCCSCTTTCEEEEEEEEEEEETTEEEEEEEEEEESSCCSCGGGCCSSSSCTTCEEEEEEESSTTSCCEEECCSHHH
T ss_pred             EECCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf             88647998765243477647887899978999999735788875430135678774247887658610001467425321


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~g~g~gi~~~~g~l~~p~~~~~~~~~~~~~~~~~~~sddgg~w~~~~~~~~~~~~E~~vve~dG~ll~  240 (379)
T d3sila_         161 IVTKNGTISAMLGGVGSGLQLNDGKLVFPVQMVRTKNITTVLNTSFIYSTDGITWSLPSGYCEGFGSENNIIEFNASLVN  240 (379)
T ss_dssp             HHHHHCSEEEEEECSEECEECTTSCEEEEEEEEECTTSSCSEEEEEEEESSSSSEECCSCCEECTTCCEEEEEETTEEEE
T ss_pred             CCCCCCCEEEECCCCCCEEEECCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCEEEECCCCEEE
T ss_conf             12236530455057662476046534645898815899862799999857887533540356778877889864885799


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~R~~g~~~v~~S~DgG~TWse~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~r~~~~~~~s~d~g~tW~~~  320 (379)
T d3sila_         241 NIRNSGLRRSFETKDFGKTWTEFPPMDKKVDNRNHGVQGSTITIPSGNKLVAAHSSAQNKNNDYTRSDISLYAHNLYSGE  320 (379)
T ss_dssp             EECCSSBCBCEEESSSSSCCEECTTTTTCSBCCTTCCCCEEEEEEETTEEEEEEEEECCTTSSTTCCCEEEEEECTTTCC
T ss_pred             EEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCC
T ss_conf             98717966999986898623145665323221224321226883469919999889888888635899974688867788


Q ss_pred             ----------------------------------------------------------C
Q ss_conf             ----------------------------------------------------------9
Q 003496          278 ----------------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------------~  278 (815)
                                                                                .
T Consensus       321 ~~~~~~~~~~~~~~~~~aYS~l~~~~~~~~~~l~~lyE~~~~i~~~~lt~~l~~~~~~~  379 (379)
T d3sila_         321 VKLIDDFYPKVGNASGAGYSCLSYRKNVDKETLYVVYEANGSIEFQDLSRHLPVIKSYN  379 (379)
T ss_dssp             EEEEEEEECSCCCTTSCCCEEEEEEEETTEEEEEEEEEETTEEEEEECGGGHHHHHTCC
T ss_pred             CEEEECCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCEEEHHHHHHHHHHCCCC
T ss_conf             67995147501589970312248747989999999998999878369776477733479

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=100.00  E-value=0  Score=28502.25  Aligned_cols=1  Identities=0%  Similarity=-0.625  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~LtfdDVllvP~~st~~sr~V~l~t~lt~~~~l~iPIIsApMdtVt~~~mA~als~~GGLGvLhr~~~   80 (378)
T d1jr1a1           1 GLTAQQLFNCGDGLTYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVTEAGMAIAMALTGGIGFIHHNCT   80 (378)
T ss_dssp             CBCHHHHTSSCCCCCGGGEEECCCCCCSCGGGCBCCEESSSSCEESSCEEECCCTTTCSHHHHHHHHHHTCEEEECCSSC
T ss_pred             CCCHHHHHCCCCCCCCCCEEEECCCCCCCHHHCEEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEECCCCC
T ss_conf             98978862568888844679847988776777562069887856899879799987388999999997899469769999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~e~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~~~~~~~~~~l~~agv~vi~id~a~g~~~~~~~~i~~ik~~~~~  160 (378)
T d1jr1a1          81 PEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIGTHEDDKYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYMKEKYPN  160 (378)
T ss_dssp             HHHHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEECSSTHHHHHHHHHHHHTCCEEEECCSSCCSHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHEEHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf             99999887641104327643335546789999956687789999999751555576403676202357999999987899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~iIaGnVaT~e~a~~L~~aGAD~VkVGiG~Gs~ctTr~~tGvG~pq~sai~~~~~~a~~~~vpIIADGGi~~~gdiakA  240 (378)
T d1jr1a1         161 LQVIGGNVVTAAQAKNLIDAGVDALRVGMGCGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKA  240 (378)
T ss_dssp             CEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHH
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCEEEE
T ss_conf             72530220129999999982999786033135444454222347665202567887511569853425333547732468


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 la~GAd~VMmGs~fAgt~EspG~~~~~~g~~~k~~~gm~S~~a~~~~~~~~~~~~~~~~~~~~~eG~~~~v~~~G~v~~~  320 (378)
T d1jr1a1         241 LALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRYFSEADKIKVAQGVSGAVQDKGSIHKF  320 (378)
T ss_dssp             HHTTCSEEEESTTTTTBTTSSSCCEESSSCEEEEEECTTSTTTC----------------CCCCCBCEEEEECCBCHHHH
T ss_pred             EEEECCEEEECCEEEEEECCCCCCCEECCCEEEECCCCCHHHHHHCCCCHHHHHCCCCCCCCCCCCCEEEECCCCCHHHH
T ss_conf             88605435532321342004675231468332312431045554401320332103345644787317850368778999


Q ss_pred             ---------------------------------------------------------C
Q ss_conf             ---------------------------------------------------------9
Q 003496          278 ---------------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------------~  278 (815)
                                                                               .
T Consensus       321 ~~~l~gglrs~m~y~G~~~l~e~~~~~~~~~~~f~~~t~~~~~e~~~h~~~~~~~~~~  378 (378)
T d1jr1a1         321 VPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELKFEKRTSSAQVEGGVHSLHSYEKRLF  378 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCSBHHHHHHHHHHSCSCEEECCHHHHHHHSCCSCSCCCCCCC
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCCCCCCCC
T ss_conf             9999999888652657573999975333577269998845301257875541012339

>d1xqga_ e.1.1.1 (A:) Maspin {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Serpins
superfamily: Serpins
family: Serpins
domain: Maspin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=28500.92  Aligned_cols=1  Identities=0%  Similarity=-1.390  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~l~~a~~~Fa~~L~~~l~~~~~~~N~v~SP~si~~~L~~l~~Ga~g~T~~el~~~L~~~~~~~~~~~~~~~~~~~   80 (378)
T d1xqga_           1 QGSMDALQLANSAFAVDLFKQLSEKEPLGNVLFSPIALSTSLSLAQVGAKGDTANEIGQVLHFENVKDVPFGFQTVTSDV   80 (378)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHHHSTTSCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHTTGGGCSSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             97678999999999999999987229798499888999999999998677589999999708998689999999999997


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~l~~~~~l~~~~~~~~~~~f~~~~~~~y~~~v~~~dF~~~~~~~~~~IN~wv~~~T~g~i~~~~~~~~~~~~t  160 (378)
T d1xqga_          81 NKLSSFYSLKLIKRLYVDKSLNLSTEFISSTKRPYAKELETVDFKDKLEETKGQINNSIKDLTDGHFENILADNSVNDQT  160 (378)
T ss_dssp             HHHTTTSSEEEEEEEEEETTSCCCHHHHHHTTTTTTTCEEEECHHHHHHHHHHHHHHHHHHHTTTSCSCCSCTTSCCTTC
T ss_pred             HCCCCCCEEEEEECHHHCCCCCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             45467725887312022034532488998766323654686432440567789999999984158715456898989875


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~l~na~~f~~~W~~~F~~~~T~~~~F~~~~~~~~~v~mm~~~~~~~~~~~~~l~~~vv~Lp~~~~~~sm~iilP~~~~  240 (378)
T d1xqga_         161 KILVVNAAYFVGKWMKKFSESETKESPFRVNKTDTKPVQMMNMEATFSMGNIDSINSKIIELPFQNKHLSMFILLPKDVE  240 (378)
T ss_dssp             CEEEEEEEEEECCBSSCCCGGGCEEEEEESSSSCEEEEEEEEEEEEEEEEEEGGGTEEEEEEEBGGGSSEEEEEEESSCC
T ss_pred             EEEEEEEEEEEEEECCCCCCCCCEECCEECCCCCEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCC
T ss_conf             17888875886002278755652215501289955764123101426422206777389995058995789999567665


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~L~~l~~~l~~~~l~~~~~~~~~~~~~v~l~lPkF~i~~~~dl~~~L~~lGl~~~F~~~~adfs~is~~~~l~vs~  320 (378)
T d1xqga_         241 DESTGLEKIEKQLNSESLSQWTNPSTMANAKVKLSIPKFKVEKMIDPKASLENLGLKHIFSEDTSDFSGMSETKGVALSN  320 (378)
T ss_dssp             SSSSSCHHHHHSCSHHHHHHHTCGGGCEEEEEEEEEECEEEEEEECTHHHHHHHTCCGGGCTTTCCCTTTCSCSSCCEEE
T ss_pred             CCCCHHHHHHHHCCHHHHHHHHHHHHCEEEEEEEEEEEEEEEEEECHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             54433899998639889998743542534799998004899876255887775584000588877544577999923787


Q ss_pred             ---------------------------------------------------------C
Q ss_conf             ---------------------------------------------------------9
Q 003496          278 ---------------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------------~  278 (815)
                                                                               +
T Consensus       321 i~qk~~i~vdE~G~~a~~~t~~~~~~~~~~f~~drPFlf~I~d~~t~~~Lf~G~v~~P  378 (378)
T d1xqga_         321 VIHKVSLEITEDGGDSIEVPGARILQHKDELNADHPFIYIIRHNKTRNIIFFGKFSSP  378 (378)
T ss_dssp             EEEEEEEEECSCBCCCCCCTTTTTSSCCCCCBCCSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             EEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEECCC
T ss_conf             6889999990685521223244457999879814998999999999978999993499

>d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Animal alpha-amylase
species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]

Probab=100.00  E-value=0  Score=28496.34  Aligned_cols=1  Identities=0%  Similarity=-1.623  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~i~~~f~W~~~~i~~~~~~yl~~lG~tai~l~P~~e~~~~~~~~~~~~Y~~~dY~id~~~Gt~~df~~L   80 (378)
T d1jaea2           1 EKDANFASGRNSIVHLFEWKWNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSYIINTRSGDESAFTDM   80 (378)
T ss_dssp             CCCCCCCTTCEEEEEETTCCHHHHHHHHHHTTTTTTEEEEECCCCSCBBCCTTCCGGGGGSBCCSCSEETTEEHHHHHHH
T ss_pred             CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHH
T ss_conf             99998879970699702574999999999999980998899092620678899877565678632268889999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 V~~aH~~GI~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dln~~n  160 (378)
T d1jaea2          81 TRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSGDFHSPCEVNNYQDADNVRNCELVGLRDLNQGS  160 (378)
T ss_dssp             HHHHHHTTCEEEEEECCSBCCSSCEEBTTSCEEBTTTTBBTTTTBCGGGBCCCCBCCCTTCHHHHHHSBBTTBCBBCTTS
T ss_pred             HHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99998567244564034421244677766555688744476788876556899886777875433100014567103389


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 p~V~~~l~~~~~~w~e~gvDGfR~Daa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~  240 (378)
T d1jaea2         161 DYVRGVLIDYMNHMIDLGVAGFRVDAAKHMSPGDLSVIFSGLKNLNTDYGFADGARPFIYQEVIDLGGEAISKNEYTGFG  240 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHTCCCCCGGGTCCTTCCCEEEEECCCCSSSSCCGGGTTTSS
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHCCCCCCCCCHHCCCCC
T ss_conf             99999999999999985778446531112578787777776543132112444555404532001553200110103665


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~Fl~NHD~~R~~~~~~~~~~~~~~~~lA~af~lt~p~G~P  320 (378)
T d1jaea2         241 CVLEFQFGVSLGNAFQGGNQLKNLANWGPEWGLLEGLDAVVFVDNHDNQRTGGSQILTYKNPKPYKMAIAFMLAHPYGTT  320 (378)
T ss_dssp             EEECHHHHHHHHHHHTTTSCGGGGGGCSGGGTCCCGGGEEECSCCTTHHHHSCTTCCCTTSHHHHHHHHHHHHHSCSSEE
T ss_pred             HHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf             00021332014554305762999999855440378540457624678777588763456898999999999998579887


Q ss_pred             ---------------------------------------------------------C
Q ss_conf             ---------------------------------------------------------9
Q 003496          278 ---------------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------------~  278 (815)
                                                                               .
T Consensus       321 ~iy~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~w~~~~r~~~i~~m~~frn~~~  378 (378)
T d1jaea2         321 RIMSSFDFTDNDQGPPQDGSGNLISPGINDDNTCSNGYVCEHRWRQVYGMVGFRNAVE  378 (378)
T ss_dssp             EEEECBCCSSTTCCCCBCTTSCBCCCEECTTSCEETTBCCGGGSHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             8982365577777898888987778875866787878889989999999999866479

>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]}

class: All alpha proteins
fold: Citrate synthase
superfamily: Citrate synthase
family: Citrate synthase
domain: Citrate synthase
species: Antarctic bacterium DS2-3R [TaxId: 56673]

Probab=100.00  E-value=0  Score=28427.86  Aligned_cols=1  Identities=0%  Similarity=-1.590  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~GL~Gv~v~~s~IS~Idg~~G~L~YRG~~i~dLa~~~sfEEVa~LL~~G~lP~~~el~~f~~~l~~~~~lp~~~~   80 (377)
T d1a59a_           1 EPTIHKGLAGVTADVTAISKVNSDTNSLLYRGYPVQELAAKCSFEQVAYLLWNSELPNDSELKAFVNFERSHRKLDENVK   80 (377)
T ss_dssp             CCCCCGGGTTCCCCCCSSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHTSCSCCHHHH
T ss_pred             CCCCCCCCCCCEECEEECEEEECCCCEEEECCEEHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             99889888998466075727858998799958439998714999999999978989499999999999998337986799


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~l~~~p~~~~pm~~l~~~~s~l~~~~~~~~~~~~~~~~~~~~~lia~~~~i~a~~~r~~~g~~~~~p~~~~~~~~~~~~  160 (377)
T d1a59a_          81 GAIDLLSTACHPMDVARTAVSVLGANHARAQDSSPEANLEKAMSLLATFPSVVAYDQRRRRGEELIEPREDLDYSANFLW  160 (377)
T ss_dssp             HHHTTSCTTSCHHHHHHHHHHHHHHTCTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf             99997302002113445555320344532344657777777777888899888877763268887789876256999987


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~l~~~Lvl~aDHg~n~StfaaR~vaSt~~d~~~~~~a~~~al~Gp~hGga~~~~~~~l~~i~~~~~~  240 (377)
T d1a59a_         161 MTFGEEAAPEVVEAFNVSMILYAEHSFNASTFTARVITSTLADLHSAVTGAIGALKGPLHGGANEAVMHTFEEIGIRKDE  240 (377)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHHHHHHHHHHHSCCCSSC
T ss_pred             HHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             62123320888877677876542477676236666664258514467787877603420111278999999998621566


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~v~~~l~~~~~i~GfGH~vy~~~DPR~~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~k~l~pNvD~  320 (377)
T d1a59a_         241 SLDEAATRSKAWMVDALAQKKKVMGFGHRVYKNGDSRVPTMKSALDAMIKHYDRPEMLGLYNGLEAAMEEAKQIKPNLDY  320 (377)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTBCCSSCSSCCTTHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHCCCBCTHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf             50266777899999998667866466874445667406777767777665412206677899999999971799978176


Q ss_pred             --------------------------------------------------------C
Q ss_conf             --------------------------------------------------------9
Q 003496          278 --------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------~  278 (815)
                                                                              +
T Consensus       321 ~~~~l~~~lG~p~~~~~~lf~i~R~~G~~AH~~Eq~~~~~l~RP~~~Y~G~~~R~~p  377 (377)
T d1a59a_         321 PAGPTYNLMGFDTEMFTPLFIAARITGWTAHIMEQVADNALIRPLSEYNGPEQRQVP  377 (377)
T ss_dssp             HHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCSCCCCCCC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCC
T ss_conf             999999996849667769999999999999999998579975746540389999897

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=100.00  E-value=0  Score=28426.07  Aligned_cols=1  Identities=0%  Similarity=-1.024  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~p~~~l~~PGP~~v~~~Vl~am~~~~~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~   80 (377)
T d1vjoa_           1 ISINDNQRLQLEPLEVPSRLLLGPGPSNAHPSVLQAMNVSPVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTA   80 (377)
T ss_dssp             CCCCCTTCCCCCSCCCCCCEECSSSCCCCCHHHHHHHSSCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHH
T ss_conf             96473003446799987266610899789999999757688897888999999999999999859999809998484899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~  160 (377)
T d1vjoa_          81 AMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQ  160 (377)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEEC
T ss_pred             HHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEECCCEEEE
T ss_conf             99999984334344420242001344444454320311100135778743202456666057640345554202334630


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (377)
T d1vjoa_         161 PLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDM  240 (377)
T ss_dssp             CCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCH
T ss_pred             CHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEECC
T ss_conf             50554334552264389960002333321012456505640212440589779974132667765203589974011001


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~rs~~v~~~~~p~  320 (377)
T d1vjoa_         241 NLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPD  320 (377)
T ss_dssp             HHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCT
T ss_pred             CHHHHCCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHCCCEEEEEECCC
T ss_conf             10110257653346530142022257777666533725787888887654566664168546068276097499998999


Q ss_pred             --------------------------------------------------------C
Q ss_conf             --------------------------------------------------------9
Q 003496          278 --------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------~  278 (815)
                                                                              .
T Consensus       321 ~~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~  377 (377)
T d1vjoa_         321 GVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR  377 (377)
T ss_dssp             TCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             989999999998649999966862326998998267578999999999999999859

>d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: UDP-N-acetylglucosamine 2-epimerase
domain: UDP-N-acetylglucosamine 2-epimerase
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=0  Score=28425.49  Aligned_cols=1  Identities=0%  Similarity=-0.925  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~k~Ki~~v~GtR~e~~kl~pli~~l~~~~~~~~~li~tG~H~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~   80 (377)
T d1o6ca_           1 KKLKVMTVFGTRPEAIKMAPLVLELKKYPEIDSYVTVTAQHRQMLDQVLDAFHIKPDFDLNIMKERQTLAEITSNALVRL   80 (377)
T ss_dssp             CCEEEEEEECSHHHHHHHHHHHHHGGGCTTEEEEEEECCSCGGGTHHHHHHTTCCCSEECCCCCTTCCHHHHHHHHHHHH
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             98469999970585999999999997189998799993798899999985168777535443889988999999999850


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~kpD~v~v~GDr~e~la~a~aa~~~~Ipi~HiegG~~s~~~~~~~~de~~R~~iskls~~hf~~t~~~~~~L~~  160 (377)
T d1o6ca_          81 DELFKDIKPDIVLVHGDTTTTFAGSLAAFYHQIAVGHVEAGLRTGNKYSPFPEELNRQMTGAIADLHFAPTGQAKDNLLK  160 (377)
T ss_dssp             HHHHHHHCCSEEEEETTCHHHHHHHHHHHHTTCEEEEESCCCCCSCTTTTTTHHHHHHHHHHHCSEEEESSHHHHHHHHH
T ss_pred             HHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf             56665336653676403454301566653114227999514565433234714554003565304886323466634433


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~G~~~~~I~~vG~~~~D~i~~~~~~~~~~~~~~~~~~~~~ilvt~Hr~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  240 (377)
T d1o6ca_         161 ENKKADSIFVTGNTAIDALNTTVRDGYSHPVLDQVGEDKMILLTAHRRENLGEPMENMFKAIRRIVGEFEDVQVVYPVHL  240 (377)
T ss_dssp             TTCCGGGEEECCCHHHHHHHHHCCSSCCCSTTTTTTTSEEEEECC----------HHHHHHHHHHHHHCTTEEEEEC---
T ss_pred             HCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             03445427523420678888777777753334430578449998323101466337899998752123355653234552


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~ni~~~~~l~~~~fl~llk~s~~vIgnSss~i~Ea~~lg~P~Inir~~tERqe~~~~g~nilv~~  320 (377)
T d1o6ca_         241 NPVVREAAHKHFGDSDRVHLIEPLEVIDFHNFAAKSHFILTDSGGVQEEAPSLGKPVLVLRDTTERPEGVEAGTLKLAGT  320 (377)
T ss_dssp             -CHHHHHHHHC--CCSSEEECCCCCHHHHHHHHHHCSEEEEC--CHHHHGGGGTCCEEEECSCCC---CTTTTSSEEECS
T ss_pred             CCCCCHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHEEECCCCHHHHHHHHHHCEEEEECCCCCCCCHHHCCEEEECCC
T ss_conf             11321122101345651475132136889999864225641640467766665414898078875822000680598789


Q ss_pred             --------------------------------------------------------C
Q ss_conf             --------------------------------------------------------9
Q 003496          278 --------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------~  278 (815)
                                                                              +
T Consensus       321 ~~~~I~~~i~~~l~~~~~~~~~~~~~npYGdG~as~rI~~~L~~~~~~~k~~~~~~~  377 (377)
T d1o6ca_         321 DEENIYQLAKQLLTDPDEYKKMSQASNPYGDGEASRRIVEELLFHYGYRKEQPDSFT  377 (377)
T ss_dssp             CHHHHHHHHHHHHHCHHHHHHHHHCCCTTCCSCHHHHHHHHHHHHTTSCSCCCCCCC
T ss_pred             CHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             999999999999749687763065889898982999999999985083336878999

>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Glycosyl Hydrolase Family 88
domain: Unsaturated glucuronyl hydrolase
species: Bacillus sp. GL1 [TaxId: 84635]

Probab=100.00  E-value=0  Score=28423.63  Aligned_cols=1  Identities=0%  Similarity=-0.959  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~g~~~~~~~~~Wt~Gf~~G~lwl~ye~Tgd~~~~~~a~~~~~~~~~~~~~   80 (377)
T d2d5ja1           1 MWQQAIGDALGITARNLKKFGDRFPHVSDGSNKYVLNDNTDWTDGFWSGILWLCYEYTGDEQYREGAVRTVASFRERLDR   80 (377)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTTCEEEEESSSSSEEEESSCSSCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             94899999999999988855101797748998377408983376479999999999869999999999999999975224


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~hd~Gf~~~~s~~~~y~~Tgd~~y~~~a~~~a~~L~~r~~~~~g~~~~w~~~~~~~~~~~~~iD~lm~~~~l~~~  160 (377)
T d2d5ja1          81 FENLDHHDIGFLYSLSAKAQWIVEKDESARKLALDAADVLMRRWRADAGIIQAWGPKGDPENGGRIIIDCLLNLPLLLWA  160 (377)
T ss_dssp             TTTCSSSTHHHHHHTTHHHHHHHHCCHHHHHHHHHHHHHHHTTEETTTTEECCSSSTTCTTTTTEEEGGGGGGHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             45566347631257679999987299989999999999999831867785435787888777766055125429999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~tgd~~y~~~A~~h~~~~~~~l~r~d~s~~~~~~~~~~tG~~~~~~t~qG~~~~s~WsRGqaW~i~gl~~~~~~t~~~  240 (377)
T d2d5ja1         161 GEQTGDPEYRRVAEAHALKSRRFLVRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGNA  240 (377)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHTBBTTSCBCSEEEECTTTCCEEEEECSSSSSTTSCBHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHCCH
T ss_conf             88509876999999999999998268899748898865899862578888788773167632199999999999983881


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~l~~a~~~a~~~l~~~~~dgi~~wd~~~p~~~~~~~DsSa~Ai~A~gll~L~~~~~~~~~~~~~Y~~~a~~i~~~l~~~  320 (377)
T d2d5ja1         241 DLLETAKRMARHFLARVPEDGVVYWDFEVPQEPSSYRDSSASAITACGLLEIASQLDESDPERQRFIDAAKTTVTALRDG  320 (377)
T ss_dssp             HHHHHHHHHHHHHHTTCCTTSCCBSBTTSCCCTTSCBCHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             78999999999999738877885321566678999877326789999999999852577267999999999999999876


Q ss_pred             --------------------------------------------------------C
Q ss_conf             --------------------------------------------------------9
Q 003496          278 --------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------~  278 (815)
                                                                              .
T Consensus       321 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~iygDYy~~Eal~r~~~~~~~~w~~~~~  377 (377)
T d2d5ja1         321 YAERDDGEAEGFIRRGSYHVRGGISPDDYTIWGDYYYLEALLRLERGVTGYWYERGR  377 (377)
T ss_dssp             TBCCCCSSCCCSBSCBCSBTTTTBSSSBCBHHHHHHHHHHHHHHHHCCCTTSSCTTC
T ss_pred             HHCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             600689988844631635789999988673559999999999997388653745899

>d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Gastric lipase
domain: Gastric lipase
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=100.00  E-value=0  Score=28421.61  Aligned_cols=1  Identities=0%  Similarity=-0.792  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~y~~e~h~v~t~DG~~l~~~ri~~~~~~~~~~~~~~~vlllHG~~~~~~~~~~~~~~   80 (377)
T d1k8qa_           1 AFGKLHPTNPEVTMNISQMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNLPN   80 (377)
T ss_dssp             CCCBSSCCCGGGGCCHHHHHHHTTCCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGGGGSSSCTT
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCC
T ss_conf             97667789987677889999984998558999817999898998468888876689989089989996314677442752


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~sla~~L~~~Gy~V~~~D~rG~G~S~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~~g~~~v~lvGhS~GG~ia~  160 (377)
T d1k8qa_          81 NSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKTGQDKLHYVGHSQGTTIGF  160 (377)
T ss_dssp             TCHHHHHHHTTCEEEECCCTTSTTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHHCCSCEEEEEETHHHHHHH
T ss_pred             CHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH
T ss_conf             06999999879989998089988888887778752220137799984341799999999972999879997332699999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~a~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (377)
T d1k8qa_         161 IAFSTNPKLAKRIKTFYALAPVATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNAL  240 (377)
T ss_dssp             HHHHHCHHHHTTEEEEEEESCCSCCSSCCSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             99986323320004675214544444114678998750136666642000114046777765431022034667877655


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~vPvL~i~  320 (377)
T d1k8qa_         241 FIICGFDTMNLNMSRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWN  320 (377)
T ss_dssp             HHHHCCCGGGSCGGGHHHHHTTCCCCEEHHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEE
T ss_pred             HHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEE
T ss_conf             42037771114677766666315553359999999999753741220330345556651345751222754899989999


Q ss_pred             --------------------------------------------------------C
Q ss_conf             --------------------------------------------------------9
Q 003496          278 --------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------~  278 (815)
                                                                              .
T Consensus       321 G~~D~~~~~~~~~~l~~~lp~~~~~~~i~~~GH~d~~~~~~a~~~v~~~I~~fl~~~  377 (377)
T d1k8qa_         321 GGNDLLADPHDVDLLLSKLPNLIYHRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGTD  377 (377)
T ss_dssp             ETTCSSSCHHHHHHHHTTCTTEEEEEEETTCCTTHHHHCTTHHHHTHHHHHHHHHTC
T ss_pred             ECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHCC
T ss_conf             589972289999999997799759999699988303424454999999999997229

>d2i71a1 e.72.1.1 (A:1-377) Hypothetical protein SSO1389 {Sulfolobus solfataricus [TaxId: 2287]}

class: Multi-domain proteins (alpha and beta)
fold: SSO1389-like
superfamily: SSO1389-like
family: Cas DxTHG
domain: Hypothetical protein SSO1389
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=0  Score=28420.59  Aligned_cols=1  Identities=0%  Similarity=0.735  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 m~~l~ia~wG~p~~w~~~~Y~~~~~~~~~~~s~~~l~~~~~~d~~vi~~~dSl~~~~~~~~~d~~~~~~~~~~~~~~~l~   80 (377)
T d2i71a1           1 MASIVFSTIGNPKGYQKVTYEIDGEKFESNVSVLALRDLLKVDKTVVILGISVADVYNCKYADYRSCKECIIQNSKNDLG   80 (377)
T ss_dssp             CEEEEEEEESCTTCCCCEEEEETTEEEEESSHHHHHHHHTTCSEEEEEEEGGGGGGGTCCCSCHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEECCCCCCCEEEEEEECCCEEECCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             95499993478665728999978931204455999998747883999997301123468822799999999999998608


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~viv~P~vg~~f~g~~~~~~~~~~~~l~~~l~~~~~~eI~lD~thGiNy~~~~~~~a~~~~~~~~~~~~~~~~~l~~  160 (377)
T d2i71a1          81 ISESYVVAPNVYQKFKGKPDHYFTYIYYHSLRILEKEGINEVFIDTTHGINYMGVLAKEAIQLAVSAYAAKSEKEVKVSL  160 (377)
T ss_dssp             CCSCEEEECCCBTTEESCTHHHHHHHHHHHHHHHHHHTEEEEEEEEEECCTTHHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCCEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             88449992797628856888999999999999850389868999777870059999999999999999974578744999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~nsdP~~~~~~~~~~I~~i~~~~i~p~~~~~~i~~~fl~~~k~~~~~~~ke~~~~i~~~~~al~~gl~lyL~~~~~~~~l  240 (377)
T d2i71a1         161 YNSDPVGKDVSDTVKLHEIEAIKISPLSGLKYVTYQILNKDKNFFNKIFSDSVNAIPRFATALDNGLFIYLSEKDSSLHL  240 (377)
T ss_dssp             EECCCTTCCTTSEEECEEEEEEEECHHHHHHHHHHHHHTSCTTTTTTSSTTHHHHHHHHHHHHHTTCHHHHHHSCCHHHH
T ss_pred             EECCCCCCCCCCCEEEEEECCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHH
T ss_conf             94776568887746999840126221466554303566667777678888888899999986540429999874022327


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~e~~~~~~~~~~~~e~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~~~~l~~l~e~~~~~v~~~~i~~Ei~~i~~~~~~  320 (377)
T d2i71a1         241 KRLEDDLSKDPLLTPSENEINVVYKDMKYALSHALFYVISRFSGNVDLDTLRHYAETYADKVTRAIIENEVDKIEKYQMG  320 (377)
T ss_dssp             HHHHHHHHSCCEEEECSSCEEEECCCHHHHHHHHHHHHHGGGCSCEEHHHHHHHHHHHSCHHHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             88998630002330465312302330788999999998740230210899999998861356999999999988861477


Q ss_pred             --------------------------------------------------------C
Q ss_conf             --------------------------------------------------------9
Q 003496          278 --------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------~  278 (815)
                                                                              -
T Consensus       321 ~~~~~~~k~~~~~~~~~d~RNF~AHaGLe~nvt~vk~~~~~i~v~y~e~~~~i~~~l  377 (377)
T d2i71a1         321 SERKLLGEYMKVEGKGFDKRILYAHGGLPYAGTYVYKEKDKVYVTYGDKIDEIERQI  377 (377)
T ss_dssp             SSCEEGGGTC---------CHHHHTTTCCTTTCEEEEETTEEEEECGGGHHHHHHHC
T ss_pred             CCHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEHHHHHHHHHHCC
T ss_conf             760478886310147885300100348652729999669889998787599998419

>d1ci9a_ e.3.1.1 (A:) Esterase EstB {Burkholderia gladioli [TaxId: 28095]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: Esterase EstB
species: Burkholderia gladioli [TaxId: 28095]

Probab=100.00  E-value=0  Score=28420.21  Aligned_cols=1  Identities=0%  Similarity=0.204  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~a~l~~~id~~~~~~~~~~~~pG~~~~V~~~g~~v~~~~~G~ad~~~~~~~~~~t~f~iaSvtK~~ta~~v~~Lve~G~l   80 (377)
T d1ci9a_           1 AASLAARLDAVFDQALRERRLVGAVAIVARHGEILYRRAQGLADREAGRPMREDTLFRLASVTKPIVALAVLRLVARGEL   80 (377)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCSEEEEEEEETTEEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHHTSS
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCC
T ss_conf             94189999999999998289875999999999999998478624455988999986860326899999999999975996


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~ldd~v~~ylP~~~~~~~~~~~~~ITi~~Ll~htsGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (377)
T d1ci9a_          81 ALDAPVTRWLPEFRPRLADGSEPLVTIHHLLTHTSGLGYWLLEGAGSVYDRLGISDGIDLRDFDLDENLRRLASAPLSFA  160 (377)
T ss_dssp             CTTSBGGGTCTTCCCBCTTSCCCCCBHHHHHHTCSSCCCHHHHCTTSHHHHHTCCCSSSCCSSCHHHHHHHHHHSBCSSC
T ss_pred             CCCCCCHHHHHHHHCCCCCCCCCCEEHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf             53322112331110134324577515013035532466633444113565540245665455899999999862888679


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 PG~~~~Ys~~~~lLg~iie~vtg~~~~~~~~e~i~~PLGm~~t~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (377)
T d1ci9a_         161 PGSGWQYSLALDVLGAVVERATGQPLAAAVDALVAQPLGMRDCGFVSAEPERFAVPYHDGQPEPVRMRDGIEVPLPEGHG  240 (377)
T ss_dssp             TTSCCCCCTHHHHHHHHHHHHHTSCHHHHHHHHTHHHHTCCSCBSCCSCGGGBCCCEECCSSSCEECCTTEEEECCTTSC
T ss_pred             CCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99627607689999998763133203455467786213875343357826640000024677653134654345545666


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~g~gGl~sta~Dlarf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~G~~~~~~~~~  320 (377)
T d1ci9a_         241 AAVRFAPSRVFEPGAYPSGGAGMYGSADDVLRALEAIRANPGFLPETLADAARRDQAGVGAETRGPGWGFGYLSAVLDDP  320 (377)
T ss_dssp             SEEEECGGGGGCTTSCCCTTTCCEECHHHHHHHHHHHHHCSSSSCHHHHHHHHSCSSCGGGCTTSTTEEECSSSEEESCH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECEEEECCC
T ss_conf             54345763223645555677632235999999999765116787077876650102477766678971241011430376


Q ss_pred             --------------------------------------------------------C
Q ss_conf             --------------------------------------------------------9
Q 003496          278 --------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------~  278 (815)
                                                                              .
T Consensus       321 ~~~~~~~~~g~~~h~G~~gt~~~idP~~~l~vv~ltN~~~~~~~~~~~~~l~~~vYa  377 (377)
T d1ci9a_         321 AAAGTPQHAGTLQWGGVYGHSWFVDRALGLSVLLLTNTAYEGMSGPLTIALRDAVYA  377 (377)
T ss_dssp             HHHTCSSCTTCEEEEETTTEEEEEEGGGTEEEEEEESEETHHHHSHHHHHHHHHHTC
T ss_pred             CCCCCCCCCCCEECCCCCCEEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf             535788999856626821418999944998999988489999875999999982189

>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II, PAC) {Streptococcus mutans [TaxId: 1309]}

class: All beta proteins
fold: Supersandwich
superfamily: V-region of surface antigen I/II (SA I/II, PAC)
family: V-region of surface antigen I/II (SA I/II, PAC)
domain: V-region of surface antigen I/II (SA I/II, PAC)
species: Streptococcus mutans [TaxId: 1309]

Probab=100.00  E-value=0  Score=28419.39  Aligned_cols=1  Identities=100%  Similarity=0.338  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~kdla~Y~~~l~~Y~~e~~~y~~alae~ek~KnedGyl~~p~aQ~LvF~~Ep~A~~ti~~~gk~~~a~~~~~~~~~~~~~   80 (377)
T d1jmma_           1 QKDLADYPVKLKAYEDEQASIKAALAELEKHKNEDGNLTEPSAQNLVYDLEPNANLSLTTDGKFLKASAVDDAFSKSTSK   80 (377)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTSBSSCCCBCEECSCCTTCEEEEEESSEEECHHHHHHHHHSGGGH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCCHHHHHHHHCCCCCH
T ss_conf             94077889999999999999999999998740556663640145414316787268885255311301112233044303


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~v~l~kg~~vtvTYtNL~nSsynGKKI  160 (377)
T d1jmma_          81 AKYVQKILQLDDLDITNLEQSNDVASSMELYGNFGDKAGWSTTVSNNSQVKWGSVLLERGQSATATYTNLQNSYYNGKKI  160 (377)
T ss_dssp             HHHHTTEECGGGCCGGGGCSGGGEESSCCEEETTSTTSSCEETTTBTSCCEEEEEEECTTCEEEEEEECCSSCEETTEEE
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCEE
T ss_conf             33101010223443224333322000002355555445501024567753025699617998999962754442178323


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 sKvvytYtl~~s~s~~g~~i~~~l~~DPT~t~f~~~~~g~~~~~~~~~v~~~vkFYDe~G~~i~~~~Al~S~sSLN~~~~  240 (377)
T d1jmma_         161 SKIVYKYTVDPKSKFQGQKVWLGIFTDPTLGVFASAYTGQVEKNTSIFIKNEFTFYDEDGKPINFDNALLSVASLNREHN  240 (377)
T ss_dssp             EEEEEEEEECTTCCCSSSCEEEEEESSGGGCEEEECCCSSCBSSCEEEEEEEEEEEETTSCBCCEEEEEEEECCCCBCSS
T ss_pred             EEEEEEEEECCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCEECCCCCEEEEECCCCCCC
T ss_conf             69999999555788888624689815995279998512666656643899999999789989226602687410258998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~iE~V~~~ng~fv~I~GSSV~~~~g~~ya~~~~~~~~~~~Gsr~~~~~~~~~~s~WD~~~s~~ayYGA~v~~~~g~~~~~  320 (377)
T d1jmma_         241 SIEMAKDYSGKFVKISGSSIGEKNGMIYATDTLNFKQGEGGSRWTMYKNSQAGSGWDSSDAPNSWYGAGAIKMSGPNNHV  320 (377)
T ss_dssp             EEEEEESCSSEEECBTTCSEEEETTEEEECSSCCSSTTSTTCSSCSSCCSSTTCCCCSSSCTTGGGGCEEEEEEESCEEE
T ss_pred             CEEEEECCCCEEEEECCCEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEE
T ss_conf             46899748971899579766865994772677432346676421223467766787778997631123778970895489


Q ss_pred             --------------------------------------------------------C
Q ss_conf             --------------------------------------------------------9
Q 003496          278 --------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------~  278 (815)
                                                                              -
T Consensus       321 t~g~~~a~~~~~~~~~~~~~~~d~~~~~~~~iWfa~ns~i~a~~vp~~~~e~Pt~P~  377 (377)
T d1jmma_         321 TVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPV  377 (377)
T ss_dssp             EEEEEEGGGTSCGGGSCCCTTCCTTCCBCSEEEECCBSCCCSSSCCBCCCCCCCCCC
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             970455432246644455666655567776231674378765458999987899989

>d1nm8a1 c.43.1.3 (A:9-385) Carnitine acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: Choline/Carnitine O-acyltransferase
domain: Carnitine acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=28424.13  Aligned_cols=1  Identities=0%  Similarity=-1.390  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~Q~sLP~LPvP~L~~Tl~ryL~s~kPl~s~ee~~~t~~~v~~F~~~~g~G~~Lq~~L~~~~~~~~nwl~~~W~~~~YL~   80 (377)
T d1nm8a1           1 HHTDPLPRLPVPPLQQSLDHYLKALQPIVSEEEWAHTKQLVDEFQASGGVGERLQKGLERRARKTENWLSEWWLKTAYLQ   80 (377)
T ss_dssp             CCCCCCCCCCCCCHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHSSSTTHHHHHHHHTTT
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf             96567998999999999999999865149999999999999998736860799999999975147773468899886435


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~R~pl~~~~n~~~~~~~~~~~~~~~q~~rAA~l~~~~l~f~~~l~~~~l~~~~~~~~plcM~qy~~lF~t~RiP~~~~D~  160 (377)
T d1nm8a1          81 YRQPVVIYSSPGVMLPKQDFVDLQGQLRFAAKLIEGVLDFKVMIDNETLPVEYLGGKPLCMNQYYQILSSCRVPGPKQDT  160 (377)
T ss_dssp             CCSCSBTTTBCEEECCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCEETTEECCCGGGGGTTTEEEECCSSSCE
T ss_pred             CCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCEEECHHHHHHHCCCEECCCCCCCC
T ss_conf             88785466766300267777760679999999999999999998728778656589944189998761765068999883


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 l~~~~~~~~~~~HIvV~~~g~~ykv~v~d~~g~~ls~~ei~~~l~~I~~~~~~~~~~~vg~LTt~~Rd~Wa~~r~~L~~~  240 (377)
T d1nm8a1         161 VSNFSKTKKPPTHITVVHNYQFFELDVYHSDGTPLTADQIFVQLEKIWNSSLQTNKEPVGILTSNHRNSWAKAYNTLIKD  240 (377)
T ss_dssp             EEECTTSSSCCCEEEEEETTEEEEEECBCTTSCBCCHHHHHHHHHHHHHTCCCCCSCCGGGGGGSCHHHHHHHHHHHTTS
T ss_pred             CCCCCCCCCCCCEEEEEECCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             20057778888769999899899999988999899899999999999961104688886405678728999999998608


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~N~~~L~~Iesalfvv~LDd~~p~~~~e~~~~~~~~~~lhG~g~~~~~~NRW~DKs~q~IV~~nG~~g~~~EHS~~DG~  320 (377)
T d1nm8a1         241 KVNRDSVRSIQKSIFTVCLDATMPRVSEDVYRSHVAGQMLHGGGSRLNSGNRWFDKTLQFIVAEDGSCGLVYEHAAAEGP  320 (377)
T ss_dssp             HHHHHHHHHHHHSSCEEEEECCCSCCCSTTHHHHHHHHHHHCSCTTTTTTSCCTTBSEEEEEETTSCEEEEECTTSCCHH
T ss_pred             CHHHHHHHHHHHCEEEEEECCCCCCCCCHHHHHHHHHHHEECCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCHH
T ss_conf             60799999997547888833788888613666666555033687557987726665517999789877862267761289


Q ss_pred             --------------------------------------------------------C
Q ss_conf             --------------------------------------------------------9
Q 003496          278 --------------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------------~  278 (815)
                                                                              .
T Consensus       321 ~v~~~~~~v~~~~~~~~~~~~~~~~~~~p~~L~f~l~~~i~~~I~~a~~~~~~li~D  377 (377)
T d1nm8a1         321 PIVTLLDYVIEYTKKPELVRSPMVPLPMPKKLRFNITPEIKSDIEKAKQNLSIMIQD  377 (377)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999999987234666788778899975878976989999999999999998259

>d1k9oi_ e.1.1.1 (I:) Alaserpin (serpin 1) {Tobacco hornworm (Manduca sexta) [TaxId: 7130]}

class: Multi-domain proteins (alpha and beta)
fold: Serpins
superfamily: Serpins
family: Serpins
domain: Alaserpin (serpin 1)
species: Tobacco hornworm (Manduca sexta) [TaxId: 7130]

Probab=100.00  E-value=0  Score=28347.73  Aligned_cols=1  Identities=0%  Similarity=-1.256  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 g~~~~~~~l~~~~~~F~~~l~~~~~~~~~~~N~v~SP~si~~~La~l~~ga~g~T~~el~~~L~~~~~~~~~~~~~~l~~   80 (376)
T d1k9oi_           1 GETDLQKILRESNDQFTAQMFSEVVKANPGQNVVLSAFSVLPPLGQLALASVGESHDELLRALALPNDNVTKDVFADLNR   80 (376)
T ss_dssp             CTHHHHTTHHHHHHHHHHHHHHHHHTTSTTSCEEECSGGGHHHHHHHTTTBCTHHHHHHHHHTTCSCTTHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             98558999999999999999999983298981998889999999999986673899999997099985457999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~f~~~~~~~y~~~~~~vdf~~~~~a~~~IN~wv~~~T~g~I~~~~~~~~l~~~~  160 (376)
T d1k9oi_          81 GVRAVKGVDLKMASKIYVAKGLELNDDFAAVSRDVFGSEVQNVDFVKSVEAAGAINKWVEDQTNNRIKNLVDPDALDETT  160 (376)
T ss_dssp             SCSCCSSBCCEEEEEEEEESSCCBCSGGGSTTTSSSCCCEEEECTTSHHHHHHHHHHHHHHHTTTSSCCCSCGGGCCTTC
T ss_pred             HHHHCCCCCEEEEEEHHHHCCCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCH
T ss_conf             87536798578854002304887166899998752286554245555699999999999986378221006877899501


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~lvna~~f~~~W~~~F~~~~t~~~~F~~~~~~~~~v~~m~~~~~~~~~~~~~l~~~vveLP~~~~~~sm~iilP~~~~  240 (376)
T d1k9oi_         161 RSVLVNAIYFKGSWKDKFVKERTMDRDFHVSKDKTIKVPTMIGKKDVRYADVPELDAKMIEMSYEGDQASMIIILPNQVD  240 (376)
T ss_dssp             CEEEEEEEEEEBCBSSCCCGGGCEEEEECSSSSCCEEEEEEEEEEEEEEEEETTTTEEEEEEEBGGGSEEEEEEEESSTT
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCC
T ss_conf             45665515655422278883233513053279926999723421417887507798799996237993699999668776


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~l~~~~~~l~~~~~~~~~~~~~~~~~v~v~lPkF~i~~~~~l~~~L~~lGl~~~F~~~~ad~s~~~~~~~~l~vs~v~q~  320 (376)
T d1k9oi_         241 GITALEQKLKDPKALSRAEERLYNTEVEITLPKFKIETTTDLKEVLSNMNIKKLFTPGAARLENLLKTKESLTVDAAIQK  320 (376)
T ss_dssp             THHHHHHHTTSTTTTTTTTTSCEEEEEEEEEECEEEEEEEEHHHHHHTTTCCSTTSTTTSCBTTTBSSCCCCCCSEEEEE
T ss_pred             CHHHHHHHHCCHHHHHHHHHHCCCEEEEEEEEEEEEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf             63578864225346899875151228999843589752212788765438754357652312356588998788736877


Q ss_pred             -------------------------------------------------------C
Q ss_conf             -------------------------------------------------------9
Q 003496          278 -------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------~  278 (815)
                                                                             +
T Consensus       321 ~~ievdE~G~~a~a~t~~~~~~~~~~~~~~f~~drPF~f~I~~~~~~lf~G~v~~P  376 (376)
T d1k9oi_         321 AFIEVNEEGAEAAAANAFGIVPKSLILYPEVHIDRPFYFELKIDGIPMFNGKVIEP  376 (376)
T ss_dssp             EEEEECSCBSSCSSSCCSSSEESCCCCCCEEECCSCEEEEEEESSSEEEEEEESCC
T ss_pred             EEEEECCCCEEEECCCCEEEECCCCCCCCEEEEECCEEEEEEECCEEEEEEEECCC
T ss_conf             89999987116001432344116788897599648979999979969999994288

>d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: O-acetyltransferase
domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG
species: Acremonium chrysogenum [TaxId: 5044]

Probab=100.00  E-value=0  Score=28347.39  Aligned_cols=1  Identities=0%  Similarity=-1.090  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~~~~~~~~~~~~~i~~F~le~G~~l~~~~laY~t~G~ln~~~~NaVlv~h~ltg~~~~~~WW~~liG~g~alDt~kyfV   80 (376)
T d2vata1           1 NRFEASLDAQDIARISLFTLESGVILRDVPVAYKSWGRMNVSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFI   80 (376)
T ss_dssp             CHHHHTSCCCEEEEEEEEECTTSCEEEEEEEEEEEESCCCTTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEE
T ss_pred             CCHHHCCCCCCEEEECCEEECCCCCCCCCEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCEEE
T ss_conf             93220345475375376782799885895699996256488899889984887677021234887077998637463389


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 I~~n~lG~~~gst~p~s~~p~~~~~~~yg~~FP~~ti~D~v~aq~~ll~~LGI~~l~aViG~SmGGmqal~wa~~~Pd~v  160 (376)
T d2vata1          81 ICLNYLGSPFGSAGPCSPDPDAEGQRPYGAKFPRTTIRDDVRIHRQVLDRLGVRQIAAVVGASMGGMHTLEWAFFGPEYV  160 (376)
T ss_dssp             EEECCTTCSSSSSSTTSBCTTTC--CBCGGGCCCCCHHHHHHHHHHHHHHHTCCCEEEEEEETHHHHHHHHHGGGCTTTB
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCHHHH
T ss_conf             98346788767888877896212377545568852057889999999987386617886134278899999998361777


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~li~Ia~~~~~s~~~~a~~~~~~~ai~~Dp~w~~G~Y~~~~~p~~GL~~Ar~~~~~ty~S~~~~~~rf~~~~~~~~gr~  240 (376)
T d2vata1         161 RKIVPIATSCRQSGWCAAWFETQRQCIYDDPKYLDGEYDVDDQPVRGLETARKIANLTYKSKPAMDERFHMAPGVQAGRN  240 (376)
T ss_dssp             CCEEEESCCSBCCHHHHHHHHHHHHHHHHSTTSGGGTCCTTSCCHHHHHHHHHHHHHHTSCHHHHHHHSCCCCCCC----
T ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC
T ss_conf             52312356523455778888999987422212457775433116789999999999984599999999723224422200


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vesyL~~~g~k~~~rfDansyl~l~~a~d~~Di~~~~~g~l~~aL~~I~a~~L  320 (376)
T d2vata1         241 ISSQDAKKEINGTDSGNSHRAGQPIEAVSSYLRYQAQKFAASFDANCYIAMTLKFDTHDISRGRAGSIPEALAMITQPAL  320 (376)
T ss_dssp             -----------------------CGGGHHHHHHHHHHHHHHSSCHHHHHHHHHHHHTCBTTTTTCSSHHHHHTTCCSCEE
T ss_pred             CCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEE
T ss_conf             01000111013444332222343156799999987765530555012899999998503333338899999850899989


Q ss_pred             -------------------------------------------------------C
Q ss_conf             -------------------------------------------------------9
Q 003496          278 -------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------~  278 (815)
                                                                             .
T Consensus       321 vI~~~sD~lFPp~~~~e~a~~l~~a~~~~I~S~~GHDaFL~e~~~~~~~I~~FL~q  376 (376)
T d2vata1         321 IICARSDGLYSFDEHVEMGRSIPNSRLCVVDTNEGHDFFVMEADKVNDAVRGFLDQ  376 (376)
T ss_dssp             EEECTTCSSSCHHHHHHHHHHSTTEEEEECCCSCGGGHHHHTHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             99868420849999999998627874999899988652266999999999999748

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=0  Score=28347.12  Aligned_cols=1  Identities=0%  Similarity=-2.155  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~ip~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~E~~la~~~g~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~   80 (376)
T d1mdoa_           1 DFLPFSRPAMGAEELAAVKTVLDSGWITTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMT   80 (376)
T ss_dssp             CCBCSCCCCCCHHHHHHHHHHHHHTCCSSSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf             98668999999999999999996699768977999999999998819599968889999999998089998989872343


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~ai~~~g~~pv~~d~~~~~~~~d~~~l~~~i~~~tkaIi~~h~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~  160 (376)
T d1mdoa_          81 WVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGERYGIPVIEDAAHATGTS  160 (376)
T ss_dssp             CHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCE
T ss_pred             CCCCCCCHHCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEEECCCHHCCCE
T ss_conf             42110001103431244114433347899999975478981999867888715333899988741946996464310674


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~g~~g~~~~Sf~~~K~l~~g~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~  240 (376)
T d1mdoa_         161 YKGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLN  240 (376)
T ss_dssp             ETTEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHH
T ss_pred             ECCEECCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHH
T ss_conf             68820466657664278867787788888997125679998764036876443332233323311000012353440145


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 Aai~~~qL~~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~gI~~~~  320 (376)
T d1mdoa_         241 AAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGL  320 (376)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf             66655433333579999866534554311465433221234444544332222220002133399999999987998465


Q ss_pred             -------------------------------------------------------C
Q ss_conf             -------------------------------------------------------9
Q 003496          278 -------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------~  278 (815)
                                                                             .
T Consensus       321 ~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~~  376 (376)
T d1mdoa_         321 HFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAG  376 (376)
T ss_dssp             CCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             ECCCHHCCHHHHHHCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             78532308998952887898799999859798448999999999999999999729

>d1f6da_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: UDP-N-acetylglucosamine 2-epimerase
domain: UDP-N-acetylglucosamine 2-epimerase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=28346.64  Aligned_cols=1  Identities=0%  Similarity=0.303  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 MKi~~v~GtR~e~~kl~pli~~l~~~~~~~~~li~tG~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   80 (376)
T d1f6da_           1 MKVLTVFGTRPEAIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLFSIVPDYDLNIMQPGQGLTEITCRILEGLKP   80 (376)
T ss_dssp             CEEEEEECSHHHHHHHHHHHHHHHHCTTCEEEEEECCTTGGGGHHHHHHTTCCCSEECCCCSSSSCHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             96999998267399999999999738998779999088989999999862878774400488999899999999986478


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~kPD~v~v~GDr~e~la~a~aa~~~~ipi~HiegG~~s~~~~~~~pde~~R~~iskls~~hf~~~~~~~~~L~~~G  160 (376)
T d1f6da_          81 ILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQNLLREN  160 (376)
T ss_dssp             HHHHHCCSEEEEETTCHHHHHHHHHHHTTTCCEEEESCCCCCSCTTSSTTHHHHHHHHHHTCSEEEESSHHHHHHHHHTT
T ss_pred             HHHHCCCCCEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHCC
T ss_conf             89745676224310344313689998740753899852446542000474066554203200488743478886877518


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~I~~vG~~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvt~H~~~~~~~~~~~i~~~l~~~~~~~~~~~  240 (376)
T d1f6da_         161 VADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQ  240 (376)
T ss_dssp             CCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEECCCCBSSCCHHHHHHHHHHHHHHHHCTTEE
T ss_pred             CCCCCCCEECCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf             98653412167248788887765423512321111022334777766998335411112009999999865434214047


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ii~p~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~~fl~ll~~a~~vignSssgi~Ea~~lg~P~Inir~~ter~~~~~~g  320 (376)
T d1f6da_         241 IVYPVHLNPNVREPVNRILGHVKNVILIDPQEYLPFVWLMNHAWLILTDSGGIQEEAPSLGKPVLVMRDTTERPEAVTAG  320 (376)
T ss_dssp             EEEECCBCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHCSEEEESSSGGGGTGGGGTCCEEECSSCCSCHHHHHHT
T ss_pred             EECCCCCCHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCEEEEECCCCHHHHHHHHCCCEEECCCCCCCCCCEECC
T ss_conf             85254432124446766640444513323556789999984163998368506766787489889727876576412368


Q ss_pred             -------------------------------------------------------C
Q ss_conf             -------------------------------------------------------9
Q 003496          278 -------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------~  278 (815)
                                                                             -
T Consensus       321 ~~i~v~~~~~~I~~ai~~~l~~~~~~~~~~~~~npYGdG~as~rI~~iLk~~~i~~  376 (376)
T d1f6da_         321 TVRLVGTDKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQACSRILEALKNNRISL  376 (376)
T ss_dssp             SEEECCSSHHHHHHHHHHHHHCHHHHHHHHHSCCTTCCSCHHHHHHHHHHHTCCCC
T ss_pred             EEEECCCCHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             06987899999999999997285766530457898989849999999998568999

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=0  Score=28344.09  Aligned_cols=1  Identities=0%  Similarity=0.303  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~iyld~a~~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~   80 (376)
T d1eg5a_           1 MRVYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKT   80 (376)
T ss_dssp             CCEECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHC
T ss_conf             97988786316699999999999998748987654699999999999999999998098978099979878997766621


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~  160 (376)
T d1eg5a_          81 VAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVED  160 (376)
T ss_dssp             HHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEECHHHHHHHCCCCCEEEEEECCCCCCCEEEEEHH
T ss_conf             44332235763223432220128999999866988999768988727789999864899608999777665412554124


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~~gp~G~~~l~~~~~~~~~p~~~g~~~~~~~~~~~~~  240 (376)
T d1eg5a_         161 VTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGVPIRPLIHGGGQERGLRSGTQN  240 (376)
T ss_dssp             HHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTSCCCCSBCSSCTTTTTBCSCCC
T ss_pred             HHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCEECCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             44554311467504787531246545520004865000125434357886268852576658720189875445477664


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~vr~  320 (376)
T d1eg5a_         241 VPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVST  320 (376)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC
T ss_pred             CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCEEEEC
T ss_conf             02456677775402210246666666543200012331011123433211256023225997999999988559908967


Q ss_pred             -------------------------------------------------------C
Q ss_conf             -------------------------------------------------------9
Q 003496          278 -------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------~  278 (815)
                                                                             -
T Consensus       321 G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~~l  376 (376)
T d1eg5a_         321 SSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFL  376 (376)
T ss_dssp             ------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHCCCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             61103886206699997399834479889996589899999999999999999639

>d1wu4a1 a.102.1.2 (A:6-381) Xylanase Y {Bacillus halodurans [TaxId: 86665]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Xylanase Y
species: Bacillus halodurans [TaxId: 86665]

Probab=100.00  E-value=0  Score=28344.03  Aligned_cols=1  Identities=0%  Similarity=-1.590  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~g~~~~~~y~n~~~~~g~~q~~~~~k~~~~~~~~f~~~~~~~~y~~~~~~~~yv~d~~n~dv~SEGqgYGMl~Av~~~dr   80 (376)
T d1wu4a1           1 EGAFYTREYRNLFKEFGYSEAEIQERVKDTWEQLFGDNPETKIYYEVGDDLGYLLDTGNLDVRTEGMSYGMMMAVQMDRK   80 (376)
T ss_dssp             CCHHHHCCCCCHHHHTTCCHHHHHHHHHHHHHHHHSSCC--CCEEEETTTEEEECBTTTTBEEHHHHHHHHHHHHHTTCH
T ss_pred             CCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCH
T ss_conf             99764675552888828899999999999999981689766189971798558766799985556799999999980999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~FD~lw~wt~~~l~~~d~~~~~L~aW~~~~~g~v~d~n~AtDgDl~iA~ALl~A~~~Wg~~~~~~~~Y~~~A~~il~~i  160 (376)
T d1wu4a1          81 DIFDRIWNWTMKNMYMTEGVHAGYFAWSCQPDGTKNSWGPAPDGEEYFALALFFASHRWGDGDEQPFNYSEQARKLLHTC  160 (376)
T ss_dssp             HHHHHHHHHHHHHTBCCSSTTTTSBCSEECTTSCBSCSCCCHHHHHHHHHHHHHHHHHHCCCSSTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf             99999999999985367777666715336799997889988767999999999999874887533356999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~nPSY~~P~~~~~fa~~a~~~~~~~W~~~~~~s~~ll~~~~~~~tGL~PDw~  240 (376)
T d1wu4a1         161 VHNGEGGPGHPMWNRDNKLIKFIPEVEFSDPSYHLPHFYELFSLWANEEDRVFWKEAAEASREYLKIACHPETGLAPEYA  240 (376)
T ss_dssp             HHTTSSSSCCCSBCTTTCCBCSSTTCSEECGGGCCHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHSCTTTCCCCSSE
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
T ss_conf             98546788865103674455558887502801037899999998613477457999999999999971147879998425


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~dg~~~~~~~~~~~~yDA~Rvpl~ia~d~~w~g~~~~~~~~~~~~~~f~~~~~~~~~~~y~~dG~~~~~~~~~~~g~~a  320 (376)
T d1wu4a1         241 YYDGTPNDEKGYGHFFSDSYRVAANIGLDAEWFGGSEWSAEEINKIQAFFADKEPEDYRRYKIDGEPFEEKSLHPVGLIA  320 (376)
T ss_dssp             ETTSSBCCTTSCSSBSGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCCGGGCEEECTTSCEEEEECSCHHHHHH
T ss_pred             EECCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHH
T ss_conf             35895378778997750199999999977512575356799999999998634666688553368414677888679999


Q ss_pred             -------------------------------------------------------C
Q ss_conf             -------------------------------------------------------9
Q 003496          278 -------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------~  278 (815)
                                                                             +
T Consensus       321 ~~a~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~YY~~~L~Llall~lsG~~r~~~p  376 (376)
T d1wu4a1         321 TNAMGSLASVDGPYAKANVDLFWNTPVRTGNRRYYDNCLYLFAMLALSGNFKIWFP  376 (376)
T ss_dssp             HHHHGGGGCTTCTTHHHHHHHHHTSCCCCSTTHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf             99999997279716899999987234788888878999999999998298444179

>d2v3qa1 c.94.1.1 (A:1-376) PstS-like phosphate-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: PstS-like phosphate-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=28343.42  Aligned_cols=1  Identities=0%  Similarity=-1.557  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~i~gaGat~p~p~~~~~~~~~~~~~~y~~~GSG~G~~~~~~g~~~~~~~~~~~tvdfa~sd~~l~~~E~~~~~~~~~~~~   80 (376)
T d2v3qa1           1 DINGGGATLPQKLYLTPDVLTAGFAPYIGVGSGKGKIAFLENKYNQFGTDTTKNVHWAGSDSKLTATELATYAADKEPGW   80 (376)
T ss_dssp             CBCEEECSTTHHHHTSTTTSCTTBCCCEECCHHHHHHHHHHTCGGGTCSCTTSCCCEEEESSCCCHHHHHHHHHHTHHHH
T ss_pred             CCEEEEHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf             93215222799999998763596789956576899999963886444556546771353477789999988774066777


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~v~iPv~~~~Iai~~N~~~~~~l~Lt~~~L~~If~G~It~Wnd~~i~~p~~~I~vv~R~d~SGTt~~Ft~~L~~~~~~  160 (376)
T d2v3qa1          81 GKLIQVPSVATSVAIPFRKAGANAVDLSVKELCGVFSGRIADWSGITGAGRSGPIQVVYRAESSGTTELFTRFLNAKCTT  160 (376)
T ss_dssp             CCEEEEEEEEEECBCBBCCCCSSCCEECHHHHHHHHHTSCCBGGGSTTSCCCSBCEEEEESSCCHHHHHHHHHHHHHCCS
T ss_pred             CCEEEEEEEEEEEEEEEECCCCHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCC
T ss_conf             86289747764479987347625543479999843337623001135457677854784489986078889988652755


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~g~~~~~~~~~~~~~~~~~~~~~a~gs~gv~~~v~~~~~~~gaIGY~~~~ya~~~~~~l~~~~~~~~~~~~~~~~~  240 (376)
T d2v3qa1         161 EPGTFAVTTTFANSYSLGLTPLAGAVAATGSDGVMAALNDTTVAEGRITYISPDFAAPTLAGLDDATKVARVGKGVVNGV  240 (376)
T ss_dssp             SSSCBCCCSCGGGTBTTCSTTSTTCEEESHHHHHHHHHHCTTSCSCEECCBCHHHHSSSGGGGGCTTTBCEECCEEETTE
T ss_pred             CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCEEECC
T ss_conf             32234643102332245677677650003573087887540477765444430100022222103332024453000035


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~v~pt~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YPI~~~~y~~~~~~~~~~~~~~~vk~Fl  320 (376)
T d2v3qa1         241 AVEGKSPAAANVSAAISVVPLPAAADRGNPDVWVPVFGATTGGGVVAYPDSGYPILGFTNLIFSQCYANATQTGQVRDFF  320 (376)
T ss_dssp             EECCBCCCTHHHHHHHHTCCCCCGGGTTCGGGGSCEEESSCBTTEEECCSSSCSCEEEEEEEEESCBSSHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHEEEECCCCCCHHHHHHHHHH
T ss_conf             66621245888997651144554344566532223334322001357888851112111100002368700159999999


Q ss_pred             -------------------------------------------------------C
Q ss_conf             -------------------------------------------------------9
Q 003496          278 -------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------~  278 (815)
                                                                             .
T Consensus       321 ~~~l~~~~~gq~~~~~~GyvPLp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (376)
T d2v3qa1         321 TKHYGTSANNDAAIEANAFVPLPSNWKAAVRASFLTASNALSIGNTNVCNGKGRPQ  376 (376)
T ss_dssp             HHHTCSSSSSHHHHHHTTCBCCCHHHHHHHHHHHTSTTSTTSTTCHHHHTTCCBCC
T ss_pred             HHHHHCCCCHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             99860553257889978974399999999999986225420227864367788999

>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

Probab=100.00  E-value=0  Score=28340.64  Aligned_cols=1  Identities=0%  Similarity=-0.527  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~T~aIq~AIdac~~Gg~V~iP~G~~~vyltg~i~LkSnv~L~l~~ga~L~~s~d~~   80 (376)
T d1bhea_           1 SDSRTVSEPKTPSSCTTLKADSSTATSTIQKALNNCDQGKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGVTLRAVNNAK   80 (376)
T ss_dssp             CCSSCCCCCCCCCEEEEEECCSSBCHHHHHHHHTTCCTTCEEEEECSSSSEEEESCEECCTTCEEEECTTCEEEECSCSG
T ss_pred             CCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEECEEECCCCEEEEECCEEEEECCCHH
T ss_conf             98654578989975686789997369999999987779999999699745699804897888789991997999738979


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~y~~~~~~~~~~~~~~~~~~~~i~~~~~~Ni~ItG~G~IDG~G~~~~~~~~~~~~~~~~~~~~~~~~~~rP~~i~~~~~~  160 (376)
T d1bhea_          81 SFENAPSSCGVVDKNGKGCDAFITAVSTTNSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSK  160 (376)
T ss_dssp             GGBSSTTCSSCEESCSCCBCCSEEEESCBSCEEECSSEEECCTTSCCSSSSSCTTHHHHHHHHHTCEECCCCSEEEESCE
T ss_pred             HCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEECCEEECCCCEEECCCCCCHHCCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf             96566630236751576541268824863079972768813344162277641000123444466777897699999115


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 nv~i~~iti~ns~~~~~~~~~~~~v~i~n~~I~~~~~~~NtDGidi~~s~nv~I~n~~i~~gDD~i~~ks~~~~~~~~ni  240 (376)
T d1bhea_         161 NFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAETRNI  240 (376)
T ss_dssp             EEEEEEEEEECCSSCSEEEESCEEEEEEEEEEECCTTCSSCCSEEEESCEEEEEESCEEECSSCSEEEEECTTSCCEEEE
T ss_pred             CEEEEEEEEECCCCEEEEEECCCEEEEEEEECCCCCCCCCCCEEECCCCCEEEEEECEEECCCCCEEEECCCCCCCCCEE
T ss_conf             68997039955993699996885599996750588657776340025645099982533048981566046677774459


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~i~n~~~~~~~g~~iGs~~~~v~nv~i~n~~~~~~~~g~~Iks~~~~gG~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~  320 (376)
T d1bhea_         241 SILHNDFGTGHGMSIGSETMGVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKEGS  320 (376)
T ss_dssp             EEEEEEECSSSCEEEEEEESSEEEEEEEEEEEESCSEEEEEECCTTTCCEEEEEEEEEEEEESCSEEEEEETTSSCCCCC
T ss_pred             EEEEEEEECCCCCEECCCCCCEEEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCCCEEEEEECCCCCCC
T ss_conf             99963896688730645668778899993258688704789825887607989999968993667448998144788888


Q ss_pred             -------------------------------------------------------C
Q ss_conf             -------------------------------------------------------9
Q 003496          278 -------------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------------~  278 (815)
                                                                             .
T Consensus       321 ~~~~i~nIt~~Ni~~~~~~~~~l~g~~~~~~~~v~~~nv~i~~~~~~~~~nv~~k~  376 (376)
T d1bhea_         321 NVPDWSDITFKDVTSETKGVVVLNGENAKKPIEVTMKNVKLTSDSTWQIKNVNVKK  376 (376)
T ss_dssp             CCCEEEEEEEEEEEECSCCEEEEECTTCSSCEEEEEEEEECCTTCEEEEESEEEEC
T ss_pred             CCCEEEEEEEEEEEEECCEEEEEECCCCCCCEEEEEEEEEEECCCCCEEEEEEECC
T ss_conf             79779518999079935325999868888823699984899759888788055329

>d2fug41 e.18.1.2 (4:35-409) NADH-quinone oxidoreductase chain 4, Nqo4 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: HydB/Nqo4-like
superfamily: HydB/Nqo4-like
family: Nqo4-like
domain: NADH-quinone oxidoreductase chain 4, Nqo4
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=0  Score=28273.67  Aligned_cols=1  Identities=0%  Similarity=-1.690  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 p~~hG~~r~~~~v~ge~V~~a~~~ig~~~RGfEk~l~Gr~~~da~~i~~RICGIC~~aH~~A~~~AlE~a~gv~~p~~a~   80 (375)
T d2fug41           1 PSTHGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYLQNITYTPRMDYLHSFAHDLAYALAVEKLLGAVVPPRAE   80 (375)
T ss_dssp             CEEECSSSCEEEECCSSSCCEEEECCTTCCCHHHHGGGSCHHHHHHHGGGTTSSSHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             CCCCCEEEEEEEECCCEEEEEEEEECCCCHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf             99885289999976988999898306652689998749996882212063111038799999999999991998899999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~lR~l~~~~e~i~sH~l~~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~~G~~~h~~~~~~gG~~~~~~~~~~~~~~~~~  160 (375)
T d2fug41          81 TIRVILNELSRLASHLVFLGTGLLDLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVKEDLPEEFVPELKKLL  160 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTSSSSSCCCEETTEESSCCCTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCEECCCEEECCCHHHHHHHHHHH
T ss_conf             99999999988767999999834520024388899999899999999846865520521202302279867889999998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  240 (375)
T d2fug41         161 EVLPHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVRKAYPYSGYETYTFDVPLGERGDVFD  240 (375)
T ss_dssp             TTTTTTTHHHHHHHSSCSCCTTSCSCCCCSSSCSTTTTTTCCSSCCSSCCTTTTTCCSSCCCC-----CCCCCCSSSSHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             76088778898740367500002577533451023315765554555642133120067554556565534424776432


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~g~vEApRG~L~  320 (375)
T d2fug41         241 RMLVRIREMRESVKIIKQALERLEPGPVRDPNPQITPPPRHLLETSMEAVIYHFKHYTEGFHPPKGEVYVPTESARGELG  320 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCSCCBCCCTTTSCCCTTCTTTCTTHHHHHHHHHHSCCCCCSCCCCCCBCCSSSCBC
T ss_pred             CCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCEEEE
T ss_conf             10213444421468999899748898744344110335699997554541013444566776899579999974886799


Q ss_pred             ------------------------------------------------------C
Q ss_conf             ------------------------------------------------------9
Q 003496          278 ------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------~  278 (815)
                                                                            .
T Consensus       321 H~~~~d~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr  375 (375)
T d2fug41         321 YYIVSDGGSMPYRVKVRAPSFVNLQSLPYACKGEQVPDMVAIIASLDPVMGDVDR  375 (375)
T ss_dssp             EEEECCSSSSCSEEEECCSHHHHTTTHHHHTTTSCGGGTTHHHHTTCCCHHHHHC
T ss_pred             EEEEECCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf             9999989981899999898877999999996799167899998567976447898

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=0  Score=28271.14  Aligned_cols=1  Identities=0%  Similarity=-1.158  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~i~EG~~~i~vp~~~~~~~~~vFYNp~q~~NRDlsvl~~~~~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~   80 (375)
T d2dula1           1 LIEVQEGKAKILIPKAESIYDSPVFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISED   80 (375)
T ss_dssp             CEEEEETTEEEEEC--------CCCCCGGGHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHH
T ss_pred             CEEEEECCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCHH
T ss_conf             94899586899941787778788242877764107999999973998799868774099999998589978998259989


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~~~~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~v  160 (375)
T d2dula1          81 AYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGV  160 (375)
T ss_dssp             HHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf             99999999986375432211243323554336741004556567515767744578888817999999997044877999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 TaTD~a~L~G~~~~~~~r~Yg~~~~~~~~~~E~glRill~~i~r~Aa~~~~~i~PllS~~~~~y~Rv~vrv~~~~~~~~~  240 (375)
T d2dula1         161 TATDGAPLCGAHPRACLRKYLAVPLRGELCHEVGTRILVGVIARYAAKYDLGIDVILAYYKDHYFRAFVKLKDGARKGDE  240 (375)
T ss_dssp             EECCHHHHTTSSHHHHHHHHSSBCCCSTTHHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEETTEEEEEEEEEESHHHHHH
T ss_pred             EECCCHHHCCCCCHHHHHHHCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEECCHHHHHH
T ss_conf             93686120479917899972876137866501889999999999987429805999999824607999999137677887


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~g~~~~C~~c~~~~~~~~~~~~~~~~~GPlW~G~L~d~efl~~~~~~~~~~~~~~~~~~~~ll~~i~eE~~~P~~y  320 (375)
T d2dula1         241 TLEKLGYIYFDDKTGKFELEQGFLPTRPNAYGPVWLGPLKDEKIVSKMVKEAESLSLARKKQALKLLKMIDQELDIPLFY  320 (375)
T ss_dssp             HHTTEEEEEECTTTCCEEEEESSSCCSSSCEEEEECSCSBCHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHSCCSSCCE
T ss_pred             HHHHCCCEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             88744817871898877775588999787867883673369999999998754057540569999999998614998298


Q ss_pred             ------------------------------------------------------C
Q ss_conf             ------------------------------------------------------9
Q 003496          278 ------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------~  278 (815)
                                                                            .
T Consensus       321 ~l~~la~~lk~~~P~~~~~~~aL~~~Gy~asrtH~~p~~iKTdAp~~~i~~i~r~  375 (375)
T d2dula1         321 DTHAIGRRLKIETKKVEEIISALREQGYEATRTHFSPTGIKTSAPYEVFIETIKR  375 (375)
T ss_dssp             EHHHHHHHHTCCBCCHHHHHHHHHHTTCCEEEETTEEEEEEESSCHHHHHHHHBC
T ss_pred             CHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCEECCCCHHHHHHHHHC
T ss_conf             5799998739999999999999997898899657899977137999999999709

>d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of family B DNA polymerases
species: Bacteriophage RB69 [TaxId: 12353]

Probab=100.00  E-value=0  Score=28270.93  Aligned_cols=1  Identities=0%  Similarity=-0.926  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 m~~fyt~v~~~gn~i~~rg~d~nG~r~~~~~~f~Py~Yv~~~~~~~t~~ksl~G~~v~~v~f~s~~e~r~~~k~~~~~~~   80 (375)
T d1ih7a1           1 MKEFYLTVEQIGDSIFERYIDSNGRERTREVEYKPSLFAHCPESQATKYFDIYGKPCTRKLFANMRDASQWIKRMEDIGL   80 (375)
T ss_dssp             CCCEEEEEEEETTEEEEEEECTTSCEEEEEECCCCEEEEECCTTSCCSCEETTSCBEEEEECSSHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCEEEECCEEEEEEEECCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCC
T ss_conf             98644022799999999999679989999954730699988999864534148817666746988999999997155543


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~v~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~DIE~~~~~~~p~~~~~~~~i~~I~~~~~~~~~~~~~~~~~~~~~~~~  160 (375)
T d1ih7a1          81 EALGMDDFKLAYLSDTYNYEIKYDHTKIRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDDRFYVFDLLNSPYGNVE  160 (375)
T ss_dssp             CCBSCCCHHHHHHHHHTCSCCCCCGGGSCEEEEEEEECCSSSCCCTTTCCSCEEEEEEEETTTTEEEEEEECCCTTCCCC
T ss_pred             EECCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCC
T ss_conf             11256641201012357654566754220455788970576656864232100011246615880999996377756654


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~sE~eLL~~F~~~~~~~dPDiitGwN~~~FD~pYL~~R~~~~~~~~~~~  240 (375)
T d1ih7a1         161 EWSIEIAAKLQEQGGDEVPSEIIDKIIYMPFDNEKELLMEYLNFWQQKTPVILTGWNVESFDIPYVYNRIKNIFGESTAK  240 (375)
T ss_dssp             CCCHHHHHSCTTTTCCCCCHHHHTTEEEEEESSHHHHHHHHHHHHHHSCCSEEEETTTTTTHHHHHHHHHHHHHCHHHHG
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCHHHHH
T ss_conf             32212233311124555655567985999829999999999999876498899871777887099999998640100233


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~D~~~~~~~~~~~~~~s~~l~~v~~~~l~~~K~~~~~~~~~~~~~d~~~~  320 (375)
T d1ih7a1         241 RLSPHRKTRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYDGPISKLRESNHQRY  320 (375)
T ss_dssp             GGSTTSCEEEEEEECSSCEEEEEEETTCEEEEHHHHHHHHSSCCCSCCSHHHHHHHHTCCCCCCCSSCGGGHHHHHHHHH
T ss_pred             HHHHCCCCCEEEEEEECCCCCEECCCCCEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCHHHH
T ss_conf             44423785079998512554011035640002899998753023210005678888751466557555999987494686


Q ss_pred             ------------------------------------------------------C
Q ss_conf             ------------------------------------------------------9
Q 003496          278 ------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------~  278 (815)
                                                                            .
T Consensus       321 ~~Y~~~D~~L~~~L~~kl~~i~~~~~~a~~~~v~~~~v~~q~~~~~~li~~~~~~  375 (375)
T d1ih7a1         321 ISYNIIDVYRVLQIDAKRQFINLSLDMGYYAKIQIQSVFSPIKTWDAIIFNSLKE  375 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSCGGGGGCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             6520998999999999872899999999987959899738999999999999529

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=0  Score=28270.10  Aligned_cols=1  Identities=0%  Similarity=-0.327  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~r~~~~~~~~~~~~~~~a~~~~~~G~~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~   80 (375)
T d1o4sa_           1 VSRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGE   80 (375)
T ss_dssp             CCHHHHHSCCCSSHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             94546548977899999999999977998589989588997889999999999855876889986789999999864332


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (375)
T d1o4sa_          81 RYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG  160 (375)
T ss_dssp             HHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf             15655433323346728999999999981899989982586543102321122222233344332356136777775235


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~  240 (375)
T d1o4sa_         161 KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGW  240 (375)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGG
T ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCCCCCC
T ss_conf             76379981899885577999999999986887098124674003001333332112355778978999405142058866


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~g~~~~~p~gg~f~~~~~  320 (375)
T d1o4sa_         241 RVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKMGVKFVEPEGAFYLFFKV  320 (375)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSBSSEEEEEC
T ss_pred             CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEEC
T ss_conf             44543233331012232212344333320002334321121023678889999999987874495685689407999979


Q ss_pred             ------------------------------------------------------C
Q ss_conf             ------------------------------------------------------9
Q 003496          278 ------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------~  278 (815)
                                                                            +
T Consensus       321 ~~~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~~~~e~l~~al~rl~~~l~~  375 (375)
T d1o4sa_         321 RGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLNS  375 (375)
T ss_dssp             SSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf             9997999999998599999976115899969999728999999999999999659

>d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal domain {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Pyruvate phosphate dikinase, N-terminal domain
domain: Pyruvate phosphate dikinase, N-terminal domain
species: Clostridium symbiosum [TaxId: 1512]

Probab=100.00  E-value=0  Score=28272.45  Aligned_cols=1  Identities=0%  Similarity=0.769  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~k~v~~f~e~~~~d~~lvGGK~AnLgel~~~G~pVP~GFviTt~Ay~~Fl~~n~~~~~~l~~~i~~~l~~l~~~~~~~~~   80 (375)
T d1kbla3           1 AKWVYKFEEGNASMRNLLGGKGCNLAEMTILGMPIPQGFTVTTEACTEYYNSGKQITQEIQDQIFEAITWLEELNGKKFG   80 (375)
T ss_dssp             CCCEEEGGGCCGGGHHHHHHHHHHHHHHHHTTCCCCCEEEECHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHTSCBT
T ss_pred             CCEEEECCCCCCHHHHCCCHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             97789887799023643828899899999783998998885099999999826657487999999999866643275446


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  160 (375)
T d1kbla3          81 DTEDPLLVSVRSGARASMPGMMDTILNLGLNDVAVEGFAKKTGNPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKE  160 (375)
T ss_dssp             CSSSCBCEEEEEECSSCCTTSSCEEEEETCCTTHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             54320121010013432100014676630350456667651343233211310255542000011015678888876653


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~q~~~~~~a~gv~~t~~~~~~~~~~~~i~~~~glg~~vv~  240 (375)
T d1kbla3         161 EKGVHFDTDLTADDLKELAEKFKAVYKEAMNGEEFPQEPKDQLMGAVKAVFRSWDNPRAIVYRRMNDIPGDWGTAVNVQT  240 (375)
T ss_dssp             HTCCCSGGGCCHHHHHHHHHHHHHHHHTTTTTCCCCCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCCGGGCCEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEECCCCCCCCCEEEC
T ss_conf             04337777767888999999999999875148865553024445530146773146655554420341466666630102


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~eLa~~a~~iE~~yG~PqD  320 (375)
T d1kbla3         241 MVFGNKGETSGTGVAFTRNPSTGEKGIYGEYLINAQGEDVVAGVRTPQPITQLENDMPDCYKQFMDLAMKLEKHFRDMQD  320 (375)
T ss_dssp             CCCTTSSTTCEEEEEEEECTTTCCEEEEEEEEESCCHHHHHHTSSCCEEGGGHHHHCHHHHHHHHHHHHHHHHHHTSCEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEECCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf             21057774226641245675444321122000013466642431226654431321808999999999999998199614


Q ss_pred             ------------------------------------------------------C
Q ss_conf             ------------------------------------------------------9
Q 003496          278 ------------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------------~  278 (815)
                                                                            -
T Consensus       321 IEWAi~dG~l~ILQaRPv~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  375 (375)
T d1kbla3         321 MEFTIEEGKLYFLQTRNGKRTAPAALQIACDLVDEGMITEEEAVVRIEAKSLDQL  375 (375)
T ss_dssp             EEEEEETTEEEEEEEEECCCCHHHHHHHHHHHHHTTSSCHHHHHHHSCGGGGGGG
T ss_pred             EEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHCCC
T ss_conf             6999999989999766788657869999999998699799999872794211229

>d1txka2 b.30.5.9 (A:23-396) Glucans biosynthesis protein G (MdoG, OpgG), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: MdoG-like
domain: Glucans biosynthesis protein G (MdoG, OpgG), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=28203.85  Aligned_cols=1  Identities=0%  Similarity=-0.228  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 F~f~~l~~~Ar~lA~~py~~p~~~lP~~l~~L~Yd~yr~Irf~~~~alW~~~~~~f~v~~fh~G~~f~~pV~i~~V~~g~   80 (374)
T d1txka2           1 FSIDDVAKQAQSLAGKGYETPKSNLPSVFRDMKYADYQQIQFNHDKAYWNNLKTPFKLEFYHQGMYFDTPVKINEVTATA   80 (374)
T ss_dssp             CCHHHHHHHHHHHHTSCCCCCCCCCCCC----CHHHHTTCEECGGGCBTTTSSCSCEEEEEECBTTBCSCBEEEEECSSC
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCE
T ss_conf             98799999999985189889876689878729998971636486521105799998787627876679877999970995


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~i~fd~~~F~y~~~~~~~~~~~~~GfAGFRl~~pln~~~~~de~~~FlGASYFRavg~g~~YGlSARGLAIdTa~~~g  160 (374)
T d1txka2          81 VKRIKYSPDYFTFGDVQHDKDTVKDLGFAGFKVLYPINSKDKNDEIVSMLGASYFRVIGAGQVYGLSARGLAIDTALPSG  160 (374)
T ss_dssp             EEECCCCGGGEECTTSCCCTTTSTTCCEEEEEEEECSSCTTCCEEEEEEESTTEEEECCTTCCCCCEEESCEESTTCTTC
T ss_pred             EEEEECCHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCHHHEEEECCCCCCCCCHHHEECCCCCCCC
T ss_conf             68810188996678877784556678730599963467887443167771620224534897366311010005799987


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 EEFP~F~~FWle~P~~~~~~~~vyALLDspSvtGAYrF~i~PG~~t~~dV~a~Lf~R~~v~~lGiAPLTSMf~~ge~~~~  240 (374)
T d1txka2         161 EEFPRFKEFWIERPKPTDKRLTIYALLDSPRATGAYKFVVMPGRDTVVDVQSKIYLRDKVGKLGVAPLTSMFLFGPNQPS  240 (374)
T ss_dssp             CBCCEEEEEEEECCCTTCCCEEEEEEEEETTEEEEEEEEEECSSSEEEEEEEEEEESSCCSCEEEEEEEECEEEBTTBCC
T ss_pred             CCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEEEECCCCCCCCCCCHHHHHCCCCCCCC
T ss_conf             67987748996657899976999999239741007999997599889999889980676121350211365306898899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~dD~RPeVHDSDGL~i~~g~GE~iWRPL~NP~~l~~S~f~d~~p~GFGLlQRdR~F~~YqD~ea~Ye~RPSlWVeP~gd  320 (374)
T d1txka2         241 PANNYRPELHDSNGLSIHAGNGEWIWRPLNNPKHLAVSSFSMENPQGFGLLQRGRDFSRFEDLDDRYDLRPSAWVTPKGE  320 (374)
T ss_dssp             SSCCSCSCEESCCEEEEECTTSCEEEEECCCCSSCEEEEEEEESCCEEEEECCCCCGGGTCCTTTCGGGCCEEEEEESSC
T ss_pred             CCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCEEEEEECCCCCCCCCEECCCCHHHHCCCHHHHCCCCEEEEEECCC
T ss_conf             88987875525664379737996782368898862175675589863233613777232306413233487378876676


Q ss_pred             -----------------------------------------------------C
Q ss_conf             -----------------------------------------------------9
Q 003496          278 -----------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------~  278 (815)
                                                                           .
T Consensus       321 WG~G~V~LvEIPT~~E~~DNIVAfW~P~~~~~~G~~~~f~Yrl~W~~~~p~~h~  374 (374)
T d1txka2         321 WGKGSVELVEIPTNDETNDNIVAYWTPDQLPEPGKEMNFKYTITFSRDEDKLHA  374 (374)
T ss_dssp             CCEEEEEEEECCCSCTTSCCEEEEEEESCCCCTTCEEEEEEEEEEESCGGGGSC
T ss_pred             CCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCC
T ss_conf             778679999768997243658999767887899996989989974789876679

>d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Citrate synthase
superfamily: Citrate synthase
family: Citrate synthase
domain: Citrate synthase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=0  Score=28197.50  Aligned_cols=1  Identities=0%  Similarity=-0.659  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 v~rGL~Gv~v~eS~Is~IDg~~G~L~YRG~~i~dLa~~~sfEEVa~LL~~G~LP~~~el~~f~~~l~~~~~lp~~~~~~l   80 (374)
T d1ioma_           1 VARGLEGVLFTESRMCYIDGQQGKLYYYGIPIQELAEKSSFEETTFLLLHGRLPRRQELEEFSAALARRRALPAHLLESF   80 (374)
T ss_dssp             CCGGGTTCCCSCCSSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCSCCHHHHHHH
T ss_pred             CCCCCCCCEEEEEECEEEECCCCEEEECCEEHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             99888998485655636748988899988559998703999999999978969799999999999997047988898999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~p~~~~pm~~l~~~vs~l~~~~~~~~~~~~~~~~~~~~~lia~~~~i~a~~~~~~~g~~~~~p~~~~s~a~n~l~m~~  160 (374)
T d1ioma_          81 KRYPVSAHPMSFLRTAVSEFGMLDPTEGDISREALYEKGLDLIAKFATIVAANKRLKEGKEPIPPREDLSHAANFLYMAN  160 (374)
T ss_dssp             TTSCTTSCHHHHHHHHHHHHHHTCTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             85343421157777766652125752223310689999998624305788899998469877788603679999877623


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 g~~p~~~~~~~l~~~lvl~aDHg~n~St~aaR~~aSt~~d~~~av~agl~al~GplhGga~~~~~~~l~e~~~~~~~~~~  240 (374)
T d1ioma_         161 GVEPSPEQARLMDAALILHAEHGFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRMIQEIGTPERAREW  240 (374)
T ss_dssp             SSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHCSHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHEEEECCCCCCCCHHHEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHH
T ss_conf             89999899999875613452588765122422554058747788888887337866786528999999850675354999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 v~~~l~~~~~i~GfGH~vy~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~pNvd~~~~~l~~~l  320 (374)
T d1ioma_         241 VREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVAEKHGHSKEYQILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDL  320 (374)
T ss_dssp             HHHHHHTTCCCTTBSCSSCSSCCTTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTTCCBCHHHHHHHHHHHT
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC
T ss_conf             99998678877776764333553237999999998776427722789999998432430266898878689999999984


Q ss_pred             -----------------------------------------------------C
Q ss_conf             -----------------------------------------------------9
Q 003496          278 -----------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------~  278 (815)
                                                                           .
T Consensus       321 Gip~~~~~~lf~i~R~~Gw~AH~~E~~~~~~~l~RP~~~Y~G~~~r~~~p~~~R  374 (374)
T d1ioma_         321 GFSLEFFTPIFAVARISGWVGHILEYQELDNRLLRPGAKYVGELDVPYVPLEAR  374 (374)
T ss_dssp             TCCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCSCSSCCCCCGGGC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             988565559999999999999999998557985277540069999988676669

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=100.00  E-value=0  Score=28194.52  Aligned_cols=1  Identities=0%  Similarity=-1.223  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~e~~~~~~~l~~~~~~~~G~~~~~fE~~~~~~~~~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~~~~   80 (374)
T d1o69a_           1 GNELKYIEEVFKSNYIAPLGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICY   80 (374)
T ss_dssp             CCHHHHHHHHHHHTTTSCTTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHH
T ss_pred             CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHH
T ss_conf             93899999999639807899899999999999978295999678799999999986988839999499661743799843


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~g~~pv~~Di~~~~~~~~~~~~~~~~~~~~~~~aii~~~~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~  160 (374)
T d1o69a_          81 LKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGT  160 (374)
T ss_dssp             TTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEECGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTS
T ss_pred             CCCEEEECCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCEECCEECCC
T ss_conf             44505734665321012123342100001233201111133310336888987651694410222342145678840688


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~gd~~~fSf~~~K~l~tgeGG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~~~i~~  240 (374)
T d1o69a_         161 FGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLK  240 (374)
T ss_dssp             SSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHH
T ss_pred             CCCEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH
T ss_conf             77557894257646534665222133689998530222233333333333458864244624566667777665431004


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 r~~i~~~y~~~L~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~r~~  320 (374)
T d1o69a_         241 KREIYEWYKEFLGEYFSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPL  320 (374)
T ss_dssp             HHHHHHHHHHHHTTTEECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCC
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEEEEECCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             67899998864024323333456787773140233034433224310000000010001210999999999879987873


Q ss_pred             -----------------------------------------------------C
Q ss_conf             -----------------------------------------------------9
Q 003496          278 -----------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------~  278 (815)
                                                                           .
T Consensus       321 y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~~~lk  374 (374)
T d1o69a_         321 WKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK  374 (374)
T ss_dssp             CCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHCHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             854342966534787899899999839898969887799999999999999979

>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Initiation factor 2b
species: Leishmania major [TaxId: 5664]

Probab=100.00  E-value=0  Score=28194.03  Aligned_cols=1  Identities=0%  Similarity=-0.262  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~~~~~~~l~si~~~~~~v~ilDQ~~LP~~~~~~~~~t~~~v~~AIk~M~VRGAPaIgvaaA~glala~~~~~~~~~~~s   80 (374)
T d2a0ua1           1 MSKPHHATLESIKYTPGSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEMRVRGAPAIAVSAALGIAVATQRKAANGELKS   80 (374)
T ss_dssp             CCCCSSCCCCSEEEETTEEEEECTTTTTTCCCEEEECSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CCCCCCCCEEEEEEECCEEEEEECCCCCCCEEEEEECCHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf             99887895016999699999985788998179999699999998856370259429999999999999985222753001


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~el~~~L~~a~~~L~~sRPTAVNL~nAv~rv~~~i~~~~~~~s~~e~~~~ll~~A~~i~~eD~~~n~~Ig~~Ga~li~e  160 (374)
T d2a0ua1          81 GREVQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAEVAQAFVELAEAVYTNDVAFNEGIMRHGAAHILA  160 (374)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCSCSHHHHHHHHHHHHHHHSCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             79999999999999985597542256899999999864287778999999999999999999999999999978999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~ilThcn~g~Lat~~~gtal~~i~~a~~~gk~~~V~v~EtRP~~qG~rlta~~L~~~gi~~t~i~Dsa~~  240 (374)
T d2a0ua1         161 AAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAAS  240 (374)
T ss_dssp             HHHHTTCSSEEEEECSCCSTTTSSSSCSHHHHHHHHHHTTCEEEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGHH
T ss_pred             HHHHCCCCCCEEEEECCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEECCCHH
T ss_conf             88621788732676416753375113224677678997698617998046433464689999998616771899545256


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~m~~~~v~~VivGad~v~~nG~v~nkiGT~~~A~~A~~~~vP~~v~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~  320 (374)
T d2a0ua1         241 SLMLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEITTNLVTK  320 (374)
T ss_dssp             HHHHHSCCCEEEECCSEECTTCCEEEETTHHHHHHHHHHTTCCEEEECCGGGBCTTCCSGGGSCCCBCCTHHHHBCTTTC
T ss_pred             HHHHCCCEEEEEECCEEEEECCCEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
T ss_conf             66205642589852318984697886246499999999749988999115642767799775646678967734334566


Q ss_pred             -----------------------------------------------------C
Q ss_conf             -----------------------------------------------------9
Q 003496          278 -----------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------~  278 (815)
                                                                           .
T Consensus       321 ~~~~~~~~~~~v~np~fD~tP~~lIt~~iiTe~G~~~P~~~~~~~~~~~~~~~~  374 (374)
T d2a0ua1         321 QRVVADGPHLSIWNPVFDITPSELITGGIITEKGVQAPAASAPYYDIASIIAQA  374 (374)
T ss_dssp             CBCSCCCTTEEECCBSEEEECGGGCCSEEECSSCEECCCSSSSCCCHHHHHHCC
T ss_pred             CEECCCCCCCCEECCCCCCCCHHHCCCEEECCCCCCCCCCCCCCCCHHHHHHCC
T ss_conf             120257888602486831789699499788889861655467721479896239

>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=28193.79  Aligned_cols=1  Identities=0%  Similarity=-1.058  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~f~~~~~~~~~~~~~~i~V~R~~l~~d~~~~l~~~~~~~l~~~l~V~F~gE~g~D~GG~~rEff~~l~~el   80 (374)
T d1nd7a_           1 HMGFRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEV   80 (374)
T ss_dssp             CCTHHHHHHHHHHHHHHTCCSSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEEETTTCCCCCTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             96378999999988761689885599976565899999999716989847876999789874478711999999999998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~p~~~lf~~~~~~~~~~~~~p~~~~~~~~~~~f~~lG~lig~al~~~~~~~~~f~~~f~k~Llg~~~t~~DL~~iD~~~  160 (374)
T d1nd7a_          81 LNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEF  160 (374)
T ss_dssp             TCGGGSSEEESSSSSCCEEECGGGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHTTCHHH
T ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHCHHH
T ss_conf             08866875664798855355874436805899998857999999984961387756899988549989899998857898


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~sl~~l~~~~~e~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~VT~~N~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~v  240 (374)
T d1nd7a_         161 YNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEV  240 (374)
T ss_dssp             HHHHHHHHSSCSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             87499998546410466035787751278742254478997652068789999999999997211789999999869876


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ip~~~l~~f~~~eL~~licG~~~id~~~l~~~~~y~gy~~~s~~i~~fw~vl~~~t~ee~~~fL~FvTGs~rlP~~G~~~  320 (374)
T d1nd7a_         241 VPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAE  320 (374)
T ss_dssp             SCGGGGTTCCHHHHHHHHHCCCCCCHHHHHHTEEEESCCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGG
T ss_pred             CCHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHEEECCCCCCCCCCHHH
T ss_conf             79898764889999986279987788999643261367899889999999877069999987446636899889864565


Q ss_pred             -----------------------------------------------------C
Q ss_conf             -----------------------------------------------------9
Q 003496          278 -----------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------~  278 (815)
                                                                           .
T Consensus       321 l~~~~~~~~~~i~~~~~~~~LP~A~TCfn~L~LP~Yss~e~l~ekL~~AI~~~e  374 (374)
T d1nd7a_         321 LMGSNGPQKFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE  374 (374)
T ss_dssp             CEETTEECCEEEECCSCTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHSCC
T ss_pred             HCCCCCCCCEEECCCCCCCCCCCHHHHHCEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf             435678875131468999999705440267669898899999999999997149

>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Morphinone reductase
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=0  Score=28192.13  Aligned_cols=1  Identities=0%  Similarity=-1.257  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~P~LF~Pl~Ig~~~lkNRiv~apm~~~~~~dg~~t~~~~~yy~~rA~gGlii~e~~~V~~~~~~~~~~~~i~~d~~   80 (374)
T d1gwja_           1 TSFSNPGLFTPLQLGSLSLPNRVIMAPLTRSRTPDSVPGRLQQIYYGQRASAGLIISEATNISPTARGYVYTPGIWTDAQ   80 (374)
T ss_dssp             CCCCCCCTTSCEEETTEEESCSEEECCCCCCCCSSSCCCHHHHHHHHHTTTSSEEEEEEEESSGGGCCBTTCCBCSSHHH
T ss_pred             CCCCCCCCCCCEEECCEEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCHHHH
T ss_conf             99994999998418998978875874458988999998799999999984878799974798886578889873555554


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 i~~~k~l~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~  160 (374)
T d1gwja_          81 EAGWKGVVEAVHAKGGRIALQLWHVGRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDGIPG  160 (374)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECCTTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCGGGHHH
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             15666689998605862676554168655545588887100035556667655443565544567878860049999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ii~~f~~AA~rA~~AGfDgVEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~~  240 (374)
T d1gwja_         161 IVEDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFL  240 (374)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTC
T ss_pred             HHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf             99999999999998099888732220346778887535764454343121100567889998998838753225553100


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~g~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~ae~~l~~g~aD  320 (374)
T d1gwja_         241 ELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKGGLIYCGNYDAGRAQARLDDNTAD  320 (374)
T ss_dssp             CCTTCCCSCHHHHHHHHHHHHHHHTCSEEEEECSCBTTBCCCCCTTHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCS
T ss_pred             CCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCC
T ss_conf             23687653247888876413110472277751576457886524999999998738878997895999999999869974


Q ss_pred             -----------------------------------------------------C
Q ss_conf             -----------------------------------------------------9
Q 003496          278 -----------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------~  278 (815)
                                                                           .
T Consensus       321 lV~~gR~~iadPd~~~K~~~G~~l~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~  374 (374)
T d1gwja_         321 AVAFGRPFIANPDLPERFRLGAALNEPDPSTFYGGAEVGYTDYPFLDNGHDRLG  374 (374)
T ss_dssp             EEEESHHHHHCTTHHHHHHHTCCCCCCCGGGSSSSSSTTTTCCCCCCCSSCCCC
T ss_pred             EEHHHHHHHHCCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHCC
T ss_conf             844669998792299999759988888841125799988387888542235319

>d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: ERO1-like
superfamily: ERO1-like
family: ERO1-like
domain: Endoplasmic oxidoreductin 1, Ero1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=28191.66  Aligned_cols=1  Identities=0%  Similarity=-1.323  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~s~~~vd~~N~~i~p~L~~L~~~dyFRyfkVnL~~~CPFW~~d~~~C~~~~C~V~~c~dee~iP~~~~~~~~~~~~~~~~   80 (374)
T d1rp4a_           1 GSFNELNAINENIRDDLSALLKSDFFKYFRLDLYKQCSFWDANDGLCLNRACSVDVVEDWDTLPEYWQPEILGSFNNDTM   80 (374)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTSTTTSEEEEESSCCCSSSCSSSSCCCTTTTBCCCSSCGGGSCGGGSHHHHTCCCTTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf             97878999899988999986378960434338899898999432574998998803775565861024101046664112


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dfC~~dD~~~~~~~YVdLl~NPERyTGY~G~~a~~IW~~IY~ENCF~~~~  160 (374)
T d1rp4a_          81 KEADDSDDECKFLDQLCQTSKKPVDIEDTINYCDVNDFNGKNAVLIDLTANPERFTGYGGKQAGQIWSTIYQDNCFTIGE  160 (374)
T ss_dssp             EECCTTCGGGSBHHHHSSTTTSSCCSSSCCCHHHHTTCCCTTEEEEETTTSCCCCCCBCHHHHHHHHHHHHHTCCCCTTS
T ss_pred             HHCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf             21145653002204033320355554431101334456777754766300856235888873788999999975789876


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~c~ekrvfyrlISGlHsSIs~Hl~~~yl~~~~~~w~pN~~~f~~R~g~~p~rl~NLYF~y~~~LrAl~k~~~~l~~~~  240 (374)
T d1rp4a_         161 TGESLAKDAFYRLVSGFHASIGTHLSKEYLNTKTGKWEPNLDLFMARIGNFPDRVTNMYFNYAVVAKALWKIQPYLPEFS  240 (374)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHSEEETTTTEEECCHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHGGGCCCCS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             43107788999988888888999998764167767637899999999736838889899999999999998888886467


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~l~~~~~~~~fde~~~f~~~~~~~lk~efr~~frnisriMDCV~CeKCrLwGKlQt~GlgtALKIL  320 (374)
T d1rp4a_         241 FCDLVNKEIKNKMDNVISQLDTKIFNEDLVFANDLSLTLKDEFRSRFKNVTKIMDCVQCDRCRLWGKIQTTGYATALKIL  320 (374)
T ss_dssp             TTSSTTTTHHHHHHHHHHTTCCGGGGSCTTCTTTSCHHHHHHHHHHHHHHHHGGGGCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             77877789999999999871666678888538841399999999999999999716676376756899887799999998


Q ss_pred             -----------------------------------------------------C
Q ss_conf             -----------------------------------------------------9
Q 003496          278 -----------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------~  278 (815)
                                                                           .
T Consensus       321 f~~~~~~~~~~~~~~~~L~R~ElvALiNt~~rlS~SI~~v~~F~~m~~~~~~~~  374 (374)
T d1rp4a_         321 FEINDADEFTKQHIVGKLTKYELIALLQTFGRLSESIESVNMFEKMYGKRLLER  374 (374)
T ss_dssp             HHHHTCCHHHHHHHHHTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             535553346766664554599999999999999999999999999999764129

>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamine synthetase catalytic domain
domain: Glutamine synthetase, C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=0  Score=28190.40  Aligned_cols=1  Identities=100%  Similarity=1.167  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~DPR~iLkk~~~~l~~~G~~~~~~~g~E~EF~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (374)
T d2bvca2           1 SRDPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEADGSPNRGYKVRHKG   80 (374)
T ss_dssp             TTCHHHHHHHHHHHHHHHSSCSEEEEEEEECEEEESEEEEEECSSCEEEEEECTTBGGGTTCSBCTTSCBCCCCCBCTTC
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCEEEEEECEEEEEECCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             98869999999999997799870357726589997145445566776201363000246787656788887786656566


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~i~~~l~~~Gi~~~~~~~E~~~~gQ~Ei~~~~~~~l~aAD~~~~~k~~ik~vA~~~G~~atFmp  160 (374)
T d2bvca2          81 GYFPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMP  160 (374)
T ss_dssp             CSCBCTTTSCCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCS
T ss_pred             CEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             50002000226899999998787469763763215666825887067630668999999999999999986397477764


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 KP~~~~~Gsg~H~h~Sl~~~~~n~~~~~~~~~~lS~~~~~~iaGlL~h~~~l~al~~P~vNSY~Rl~~~~~ap~~~~Wg~  240 (374)
T d2bvca2         161 KPLFGDNGSGMHCHQSLWKDGAPLMYDETGYAGLSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVPGYEAPINLVYSQ  240 (374)
T ss_dssp             CSSTTSCCCCEEEEEEEEETTEECSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHHSCSTTHHHHSSTTSSSCSBCCEEE
T ss_pred             EECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEECC
T ss_conf             31567887660079974158988655566655567999999999985209888987378742653489875644774046


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~nR~~~iRi~~~~~~~~~~riE~R~~da~aNPYL~lAailaagl~Gi~~~l~p~~p~~~~~~~~~~~~~~~~~~LP~sl~  320 (374)
T d2bvca2         241 RNRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDKDLYELPPEEAASIPQTPTQLS  320 (374)
T ss_dssp             TCTTSSEEECCCCSCTTSCCEEECSCCSSSCHHHHHHHHHHHHHHHHHTTCCCCCCCCSCGGGCCHHHHHTSCBCCSSHH
T ss_pred             CCCCCCEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHH
T ss_conf             76655311024468975626885278833107899999999866656412344687778513299657658132501799


Q ss_pred             -----------------------------------------------------C
Q ss_conf             -----------------------------------------------------9
Q 003496          278 -----------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------~  278 (815)
                                                                           -
T Consensus       321 eAl~~l~~d~~~~~~~~~~g~~~i~~y~~~Kr~~E~~~~~~~vt~wE~~~Y~~~  374 (374)
T d2bvca2         321 DVIDRLEADHEYLTEGGVFTNDLIETWISFKRENEIEPVNIRPHPYEFALYYDV  374 (374)
T ss_dssp             HHHHHHHHCCHHHHGGGSSCHHHHHHHHHHHHHHTHHHHHTSCCHHHHHHHTTC
T ss_pred             HHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCC
T ss_conf             999999759787876563789999999999999999999689999999604899

>d1so7a_ b.68.1.1 (A:) Sialidase 2 (Neu2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Sialidases
family: Sialidases (neuraminidases)
domain: Sialidase 2 (Neu2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=28186.72  Aligned_cols=1  Identities=0%  Similarity=-0.860  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~p~~~~~~~f~~g~~~yRiP~lv~~~~g~~l~A~a~~r~~~~d~~~~~iv~~rS~D~G~T~~~~Ws~~~~v~~~~~~~~~   80 (374)
T d1so7a_           1 LPVLQKESVFQSGAHAYRIPALLYLPGQQSLLAFAEQRASKKDEHAELIVLRRGDYDAPTHQVQWQAQEVVAQARLDGHR   80 (374)
T ss_dssp             CCCSEEEEEEECTTCCEEEEEEEEETTTTEEEEEEEECC-------CEEEEEEEEEEGGGTEEEECCCEECTTSCCTTEE
T ss_pred             CCCCCEEEEEECCCCCEEECEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCE
T ss_conf             99431267768895368647799985999999999687677668987699999637883043466798994778989955


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~p~~~~d~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~p~~i~~~~~~~~~~~~~~~~~~~~~  160 (374)
T d1so7a_          81 SMNPCPLYDAQTGTLFLFFIAIPGQVTEQQQLQTRANVTRLCQVTSTDHGRTWSSPRDLTDAAIGPAYREWSTFAVGPGH  160 (374)
T ss_dssp             EEEEEEEECTTTCCEEEEEEEEESSCCHHHHHCTTCCCCEEEEEEESSTTSSCCCCEECHHHHHGGGGGGEEEEEECSSC
T ss_pred             EEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCEEEEEECCC
T ss_conf             56212789899997999998506877653224688885408999688886335686026610145435774366520233


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~r  240 (374)
T d1so7a_         161 CLQLNDRARSLVVPAYAYRKLHPIQRPIPSAFCFLSHDHGRTWARGHFVAQDTLECQVAEVETGEQRVVTLNARSHLRAR  240 (374)
T ss_dssp             CEECCSTTCCEEEEEEEEECCSSSSCCEEEEEEEEESSTTSSCEECCCCSBSEEEEEEEEEEC--CEEEEEEEEESSSEE
T ss_pred             CEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCCCE
T ss_conf             12664048868866676516766678971499999358754110156568888422588851456643677425478967


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~S~D~G~tW~~~~~~~~l~~~~~~~~~~s~i~~~~~~~~~~~~~~~ll~~~p~~~~~r~~~~l~l~~S~D~G~tW~~  320 (374)
T d1so7a_         241 VQAQSTNDGLDFQESQLVKKLVEPPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRPPAPEAWSE  320 (374)
T ss_dssp             EEEEESSTTSSCCCCEEEEEEECCTTTCCCCEEEEEECCCC----CSEEEEEEEECCSSSSEEEEEEEESSTTCGGGCCC
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCEECCC
T ss_conf             99996279966543202333448888885314898335434444688369983788988887608999998889916478


Q ss_pred             -----------------------------------------------------C
Q ss_conf             -----------------------------------------------------9
Q 003496          278 -----------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------~  278 (815)
                                                                           -
T Consensus       321 ~~~i~~g~~~YS~~~~~~dg~~~~~~i~~lyE~~~~~~i~f~~~~l~~~~~~~~  374 (374)
T d1so7a_         321 PVLLAKGSCAYSDLQSMGTGPDGSPLFGCLYEANDYEEIVFLMFTLKQAFPAEY  374 (374)
T ss_dssp             CEEEEEEEEEEEEEEEEEECTTSSEEEEEEEEETTTTEEEEEEEEHHHHCGGGC
T ss_pred             CEEECCCCCCCCHHEECCCCCCCCEEEEEEEECCCCCEEEEEEEEHHHHCCCCC
T ss_conf             548688997684525867998885699999956997657999989999175779

>d1kfwa1 c.1.8.5 (A:10-327,A:389-444) Psychrophilic chitinase B {Arthrobacter sp., tad20 [TaxId: 1667]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Type II chitinase
domain: Psychrophilic chitinase B
species: Arthrobacter sp., tad20 [TaxId: 1667]

Probab=100.00  E-value=0  Score=28185.18  Aligned_cols=1  Identities=0%  Similarity=-1.624  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~g~rvvgYy~~W~~y~r~~~~~~l~~~i~~~~lTHi~YAFa~i~~~~~~~~~~~~~~~~~~~g~~~~~d~~~d~   80 (374)
T d1kfwa1           1 PLTSTVNGYRNVGYFAQWGVYGRAFQAKQLDVSGTAKNLTHINYSFGNINNQTLTCFMANKAQGTGPNGSDGAGDAWADF   80 (374)
T ss_dssp             CCBSSBTTBEEEEEEEGGGGSTTCCCHHHHHHTSCGGGCSEEEEEEECBCTTTCSBCCCEECCCSSTTTTTTCEEHHHHH
T ss_pred             CCCCCCCCCEEEEEECCCEECCCCCCHHHCCCCCCHHHCCEEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             98888888789999895400588898634767798524987999123014875532024311134778752347606541


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lK~~~p~lKvllSiGGw~~s~~F~~~a~~~~~R~~Fi~s~v~~~~~~~l~  160 (374)
T d1kfwa1          81 GMGYAADKSVSGKADTWDQPLAGSFNQLKQLKAKNPKLKVMISLGGWTWSKNFSKAAATEASRQKLVSSCIDLYIKGNLP  160 (374)
T ss_dssp             TCCCCTTTSSSSSCCCTTCSCCHHHHHHHHHHTTCTTCEEEEEEECSSSCTTHHHHTSSHHHHHHHHHHHHHHHTSCCEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             33334444456655653321013689999998618997599998189877763111047889999999999999981975


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~FDGiDiDWEyP~~~~~~~~~~~~~~~D~~nf~~Ll~eLR~~ld~~~~~~~k~~~Ls~A~~~~~~~~  240 (374)
T d1kfwa1         161 NFEGRGGAGAAAGIFDGIDIDWEWPGTNSGLAGNGVDTVNDRANFKALLAEFRKQLDAYGSTNNKKYVLSAFLPANPADI  240 (374)
T ss_dssp             EETTEEETTTTTTTCCEEEEECSCTTSSCSSTTCCCCTTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECSSHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC
T ss_conf             21111232233244663011226514446777777887648999999999999999987563575389999852540011


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~d~~~i~~~vD~invMtYD~~G~w~~~~tg~~apLy~~~~~~~~~~~~~svd~aV~~~~~~Gvp~~KlvlGipyd~  320 (374)
T d1kfwa1         241 DAGGWDDPANFKSLDFGSIQGYDLHGAWNPTLTGHQANLYDDPADPRAPSKKFSADKAVKKYLAAGIDPKQLGLGLAADN  320 (374)
T ss_dssp             HHHTTTCGGGGGTCSEEEECCSCSSCTTSTTBCCCSSCSSCCTTCCSCGGGCCCHHHHHHHHHHTTCCGGGEEEEEESCC
T ss_pred             CCCCCCHHHHHCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCHHHEEEEECCCC
T ss_conf             23473266452004799997144046789987776675779977877777770699999999987999899389846799


Q ss_pred             -----------------------------------------------------C
Q ss_conf             -----------------------------------------------------9
Q 003496          278 -----------------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------------~  278 (815)
                                                                           +
T Consensus       321 ~~si~~K~~y~~~~glgG~m~W~~~~D~~g~Ll~a~~~~l~~~~~~~~~~~~p~  374 (374)
T d1kfwa1         321 IATTKQKTDYIVSKGLGGGMWWELSGDRNGELVGAMSDKFRAAAPGPVTEAAPP  374 (374)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECGGGCTTCHHHHHHHHHHHHSSCCSCCCBCCC
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             999999999998569953999975579997499999998458899987788998

>d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: UDP-N-acetylglucosamine 2-epimerase
domain: UDP-N-acetylglucosamine 2-epimerase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=0  Score=28117.71  Aligned_cols=1  Identities=0%  Similarity=-1.256  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~MkkI~~v~GtR~e~~kl~pli~~l~~~~~~~~~li~tG~H~~~~~~~~~~~~i~~d~~l~~~~~~~s~~~~~~~~~~~~   80 (373)
T d1v4va_           1 GMKRVVLAFGTRPEATKMAPVYLALRGIPGLKPLVLLTGQHREQLRQALSLFGIQEDRNLDVMQERQALPDLAARILPQA   80 (373)
T ss_dssp             CCEEEEEEECSHHHHHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHTTTCCCSEECCCCSSCCCHHHHHHHHHHHH
T ss_pred             CCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             99769999873697999999999997189998899992688255637122408886656787888887789999999987


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~l~~~kPD~vlv~GDr~e~la~a~aa~~~~ipi~HiegG~rsg~~~~~~~de~~R~~iskls~~hf~~t~~~~~~L~~  160 (373)
T d1v4va_          81 ARALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLRSGNLKEPFPEEANRRLTDVLTDLDFAPTPLAKANLLK  160 (373)
T ss_dssp             HHHHHHTTCSEEEEESSCHHHHHHHHHHHHTTCCEEEETCCCCCSCTTSSTTHHHHHHHHHHHCSEEEESSHHHHHHHHT
T ss_pred             HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHH
T ss_conf             66664037640011136753103778898762122241343455433567616666655223443255122156666666


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~Ge~~~~I~~vG~p~~D~i~~~~~~~~~~~~~~~~~~~lvt~hr~~n~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~  240 (373)
T d1v4va_         161 EGKREEGILVTGQTGVDAVLLAAKLGRLPEGLPEGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLNPVV  240 (373)
T ss_dssp             TTCCGGGEEECCCHHHHHHHHHHHHCCCCTTCCSSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSCHHH
T ss_pred             HCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             30454213442662155777654311000223445531688426555312789999999986533565035640342221


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~n~~~~~~l~~~~~l~ll~~s~~vignSssgi~Ea~~lg~P~Inir~~~eRqeg~~~g~nvlv~~d~~~  320 (373)
T d1v4va_         241 REAVFPVLKGVRNFVLLDPLEYGSMAALMRASLLLVTDSGGLQEEGAALGVPVVVLRNVTERPEGLKAGILKLAGTDPEG  320 (373)
T ss_dssp             HHHHHHHHTTCTTEEEECCCCHHHHHHHHHTEEEEEESCHHHHHHHHHTTCCEEECSSSCSCHHHHHHTSEEECCSCHHH
T ss_pred             HHHHHHHHCCCCCCEEECCCHHHHHHHHHHHCEEEECCCCHHHHCCHHHCCCEEEECCCCCCHHHHHCCEEEECCCCHHH
T ss_conf             03555543033320011100078888876430168506412222003205868984887669878962904975899999


Q ss_pred             ----------------------------------------------------C
Q ss_conf             ----------------------------------------------------9
Q 003496          278 ----------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------~  278 (815)
                                                                          +
T Consensus       321 I~~~i~~~l~~~~~~~~~~~~~npYGdG~as~rI~~~L~~~~~~~~~~~~~~~  373 (373)
T d1v4va_         321 VYRVVKGLLENPEELSRMRKAKNPYGDGKAGLMVARGVAWRLGLGPRPEDWLP  373 (373)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHSCCSSCCSCHHHHHHHHHHHHTTSSCCCCCCCC
T ss_pred             HHHHHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             99999999719898864024889898987999999999998489989878899

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=0  Score=28117.63  Aligned_cols=1  Identities=0%  Similarity=-0.161  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLREKQQFP   80 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCGGGEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCCEEEECCCEEEECCCHHHHHHHHHHCCCCCCCCC
T ss_conf             99899989688999999999868998999958998858668954299899538658727887999999983885212332


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (373)
T d1seza1          81 LSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLEPILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPF  160 (373)
T ss_dssp             SSCCCEEEESSSSEEECCSSHHHHHHSSSSCHHHHHHHHTHHHHC----------CCCBHHHHHHHHHCHHHHHTTHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCHHCCCCHH
T ss_conf             11233212244333221122134442122211355566788887642000000111000000012223432001011012


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~  240 (373)
T d1seza1         161 VAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICKD  240 (373)
T ss_dssp             HHHHHSCCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC----------CCCSCCSTTCSCBEETTCTHHHHHHHHTT
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
T ss_conf             21010233110025567899987641001445567876404322222101234333203540453034612799999998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 l~~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~  320 (373)
T d1seza1         241 LREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGH  320 (373)
T ss_dssp             SCTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCT
T ss_pred             HCCCEEECCCEEEEEEEECCCCCCCCCCEEEECCCCCCCCEEEECCEEEECCCHHHHHHCCCCCCCCCCCHHHHCCCCCC
T ss_conf             50655764987899999678542113552786124789746998899999986577653365557775332330100245


Q ss_pred             ----------------------------------------------------C
Q ss_conf             ----------------------------------------------------9
Q 003496          278 ----------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------~  278 (815)
                                                                          +
T Consensus       321 ~~~~~~~~~~~~~t~~pglf~aGd~~~g~~~~~A~~~G~~aA~~i~~~L~~~~  373 (373)
T d1seza1         321 NYDSVLDAIDKMEKNLPGLFYAGNHRGGLSVGKALSSGCNAADLVISYLESVS  373 (373)
T ss_dssp             THHHHHHHHHHHHHHSTTEEECCSSSSCSSHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             CCCCEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             78867626423478999999972578765399999999999999999875289

>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Dextranase, catalytic domain
domain: Dextranase, catalytic domain
species: Penicillium minioluteum [TaxId: 28574]

Probab=100.00  E-value=0  Score=28115.05  Aligned_cols=1  Identities=0%  Similarity=-0.826  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~ga~p~~~~d~t~a~~~a~~~~~~~~~~~vvy~PpG~y~~g~~~~~~~~~~~~~g~~l~~~~~~~y~~~G~~~~~~i~   80 (373)
T d1ogmx2           1 LPSGMIPHMTPDNTQTMTPGPINNGDWGAKSILYFPPGVYWMNQDQSGNSGKLGSNHIRLNSNTYWVYLAPGAYVKGAIE   80 (373)
T ss_dssp             CCGGGSCCCCTTTEEECCSEEECTTTTCSSSEEEECSEEEEECBCTTCCBSCSSSCCEECCTTCCEEEECTTEEEESCEE
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCEEEECCEEECCCEEEECCCEEECCCCEEEECCCCCEEEEEEE
T ss_conf             98886589898846875310465244689888998994638387430474588738669636743776079857986798


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~n~~i~giti~~s~~~~~~~~~~~~v~i~  160 (373)
T d1ogmx2          81 YFTKQNFYATGHGILSGENYVYQANAGDNYIAVKSDSTSLRMWWHNNLGGGQTWYCVGPTINAPPFNTMDFNGNSGISSQ  160 (373)
T ss_dssp             ECCSSCEEEESSCEEECTTSCTTCBTTTTTBSCCCTTTBCCSEEESCCCSSEEEEEESCEEECCSSCCEEECSSSCEEEE
T ss_pred             ECCCCEEEEECCEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECEEEECCCEEEEEECCCCEEEEE
T ss_conf             63765089971207838866632566543223346776567755899984227999677997899169987268759999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~i~~~~~~~~n~dgi~~~~~~~i~~~~~~~gDD~i~~~s~~i~v~n~~~~~~~~~~~~~~g~~g~~i~nv~v~ni~v~  240 (373)
T d1ogmx2         161 ISDYKQVGAFFFQTDGPEIYPNSVVHDVFWHVNDDAIKIYYSGASVSRATIWKCHNDPIIQMGWTSRDISGVTIDTLNVI  240 (373)
T ss_dssp             EEEEEEECCCSTTCCCCBCCTTCEEEEEEEEESSCSEECCSTTCEEEEEEEEECSSSCSEECCSSCCCEEEEEEEEEEEE
T ss_pred             EEEEEECCCCCCCCEEEECCCCEEEEEEEEECCCCEEEECCCCEEEEEEEEECCCCEEEEEECCCCCCCCEEEEEEEEEE
T ss_conf             78999668877787005324878999528963887799657988999799978875247883667887631599915998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ni~f~nI~~~~~~~~~i~~~~~~~~~~~~i~nV~i~nI~~~~~~~~  320 (373)
T d1ogmx2         241 HTRYIKSETVVPSAIIGASPFYASGMSPDSRKSISMTVSNVVCEGLCPSLFRITPLQNYKNFVVKNVAFPDGLQTNSIGT  320 (373)
T ss_dssp             ECCCSSCCTTTTCEEEEECCCSSSSCCCEEEEEEEEEEEEEEECSSBCEEEEECCSEEEEEEEEEEEEETTCBCCSTTCT
T ss_pred             CCEECCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEEEEECCCC
T ss_conf             85611220033434443322112100689869992899919998753676999876788888332189984499804571


Q ss_pred             ----------------------------------------------------C
Q ss_conf             ----------------------------------------------------9
Q 003496          278 ----------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------~  278 (815)
                                                                          +
T Consensus       321 ~~~~~~~~~~~~~~~~~~Ni~i~~~~i~~~n~~~~~~~~~~~~g~~~~~~~~~  373 (373)
T d1ogmx2         321 GESIIPAASGLTMGLAISAWTIGGQKVTMENFQANSLGQFNIDGSYWGEWQIS  373 (373)
T ss_dssp             TCEEECCCTTCCEEEEEEEEEETTEECCTTTCSTTSSSCEEECGGGTTTCEEC
T ss_pred             EEEEEECCCCCCCCEEEECEEEECEEEECCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf             66875014687388578676991969864777777321678777504531229

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=100.00  E-value=0  Score=28115.91  Aligned_cols=1  Identities=0%  Similarity=0.071  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~a~~~~~~~~~a~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l   80 (373)
T d2madh_           1 SSASAAAAAAAAALAAGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEF   80 (373)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEECCCCCEE
T ss_conf             90565434310132145678986563018999789997342257876599998999979999957988607986899989


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~  160 (373)
T d2madh_          81 ALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD  160 (373)
T ss_pred             EEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCEE
T ss_conf             99960577532124531899997778938889726885136851689708998589937999986987467762368728


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  240 (373)
T d2madh_         161 DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQAD  240 (373)
T ss_pred             EEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEECCCCEEEEEE
T ss_conf             99824520699962899199999479939999747742667886300366753043458878994299925896599997


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~  320 (373)
T d2madh_         241 ISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDV  320 (373)
T ss_pred             CCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCE
T ss_conf             68990789776305647578664136741335771499759995488824786258986999989999698986689982


Q ss_pred             ----------------------------------------------------C
Q ss_conf             ----------------------------------------------------9
Q 003496          278 ----------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------~  278 (815)
                                                                          .
T Consensus       321 ~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~~  373 (373)
T d2madh_         321 DAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNEA  373 (373)
T ss_pred             EEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEECCC
T ss_conf             58999989998999996799929999999998999988889898189984689

>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium vivax [TaxId: 5855]

Probab=100.00  E-value=0  Score=28114.22  Aligned_cols=1  Identities=0%  Similarity=-1.158  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~Y~~~I~iGtP~Q~~~v~~D   80 (373)
T d1miqa_           1 HLTLAFKIERPYDKVLKTISKKNLKNYIKETFNFFKSGYMKQNYLGSENDVIELDDVANIMFYGEGEVGDNHQKFMLIFD   80 (373)
T ss_dssp             CEEEEEEEECHHHHHHHHSCHHHHHHHHHHHHHHHTTSCTTCCCCCBTTBCCCGGGTBCEEEECCCEETTTTEECCEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEEEEE
T ss_conf             92233303582467787766666889887644331134232122256787687255169789999998799989999997


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 TGSs~lWv~~~~C~~~~c~~~~~y~~~~SsT~~~~~~~~~~~y~~G~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~  160 (373)
T d1miqa_          81 TGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGTVKGFFSKDLVTLGHLSMPYKFIEVTDTDDLEPI  160 (373)
T ss_dssp             TTCCCEEEEBTTCCSSGGGGSCCBCGGGCTTCEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEECGGGTTH
T ss_pred             CCCHHEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCEEEEEEEEEEEEECCCCEEEEEEEEEECCCCCCC
T ss_conf             99625189879999743468982389889853388963899928817999999788897674267668999840356753


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~g~l~~Gg~d~~~~~g~~~~~pv~~~~~w~  240 (373)
T d1miqa_         161 YSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQ  240 (373)
T ss_dssp             HHHSCCCEEEECSSCCTTCSSCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEEBSSSSSSE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHCCCCCEEEEEECCCCCCCCEEECCCCCCHHCCCEEEEEECCCCCEEE
T ss_conf             23566563566444433578854301124443225653278871367888715642677830114424687114552489


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 i~l~~~~~~~~~~~~~~iiDTGTs~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~P~itf~f~g~~~~l~p~~y~  320 (373)
T d1miqa_         241 IDLDVHFGKQTMEKANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYYM  320 (373)
T ss_dssp             EEEEEEETTEEEEEEEEEECTTBSSEEECHHHHHHHHHHHTCEECTTSSCEEEETTCTTCCCEEEECSSCEEEECGGGSE
T ss_pred             EEEEEEECCEECCCCCEEECCCCCEECCCHHHHHHHHHHHCCEECCCCCEEEECCCCCCCCEEEEEECCEEEEECHHHEE
T ss_conf             99998778675487416862677213157899999999839755068970675344688863999999999998889906


Q ss_pred             ----------------------------------------------------C
Q ss_conf             ----------------------------------------------------9
Q 003496          278 ----------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------~  278 (815)
                                                                          .
T Consensus       321 ~~~~~~~~~~C~~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~rIGfA~ak~  373 (373)
T d1miqa_         321 NPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAIAKN  373 (373)
T ss_dssp             EESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTEEEEEEECC
T ss_pred             EEEEECCCCEEEEEEEECCCCCCCEEECHHHHCCEEEEEECCCCEEEEEECCC
T ss_conf             88996799899999998888999899717943769999999999999998079

>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Amide receptor/negative regulator of the amidase operon (AmiC)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=0  Score=28113.92  Aligned_cols=1  Identities=0%  Similarity=-0.195  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~pvIG~~~p~tG~~a~~G~~~~~g~~lAv~~iN~~GGi~Gr~i~l~~~D~~~~~~~a~~~a~~Li~~~~V~aiiG~~~S~   80 (373)
T d1qo0a_           1 RPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSH   80 (373)
T ss_dssp             CCEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBCCEEEEECCTTCHHHHHHHHHHHHHHSCCCEEEECCSHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECHHHH
T ss_conf             98899972886842655299999999999998850996886889999769999999999999999608966998041333


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~av~~~~~~~~vp~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~vaii~~d~~~g~~~~~~~~~~~~~  160 (373)
T d1qo0a_          81 TRKAVMPVVERADALLCYPTPYEGFEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQ  160 (373)
T ss_dssp             HHHHHHHHHHHHTCEEEECSCCCCCCCCTTEEECSCCGGGTHHHHHHHHHHHSCSEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf             24456899997199678223354345687336604671787777888987515742553467764037888653111220


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~G~~vv~~~~~~~~~~~~d~~~~~~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  240 (373)
T d1qo0a_         161 HGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEAEVAKMESDV  240 (373)
T ss_dssp             TTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCSTTHHHHHHHHHHHHCSSCCCCEEESSCCHHHHTTSCHHH
T ss_pred             CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             36733678971676442046799999875188732320235047779999998457656640125545248776444443


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~aY~a~~~~a~Ai~~ag~~d~~~i~~aL~~~~~~~~~G~  320 (373)
T d1qo0a_         241 AEGQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGNWRVEDVQRHLYDIDIDAPQGP  320 (373)
T ss_dssp             HTTCEEEESCCTTCCSHHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHSSCCEEETTEE
T ss_pred             HCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEECCCEE
T ss_conf             05720102442000027789999999987398788770799999999999999998689999999999855953078365


Q ss_pred             ----------------------------------------------------C
Q ss_conf             ----------------------------------------------------9
Q 003496          278 ----------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------~  278 (815)
                                                                          -
T Consensus       321 i~f~~~~~~~~~~~~i~q~~~dg~~~vv~~~~~~v~p~p~~~~~~~~~w~~~~  373 (373)
T d1qo0a_         321 VRVERQNNHSRLSSRIAEIDARGVFQVRWQSPEPIRPDPYVVVHNLDDWSASM  373 (373)
T ss_dssp             EEECTTTSBEEBCCEEEEECTTSCEEEEEECSSCBCCCTTCCSCCGGGGGGGC
T ss_pred             EEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99838998346866999993699589996069836799974888865455569

>d1m0wa2 d.142.1.6 (A:6-210,A:324-491) Eukaryotic glutathione synthetase ATP-binding domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Eukaryotic glutathione synthetase ATP-binding domain
domain: Eukaryotic glutathione synthetase ATP-binding domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=28112.14  Aligned_cols=1  Identities=0%  Similarity=-1.392  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~s~~~~~~l~~~~~dwa~~hGl~~~~~~~~~~~~~~~~aP~tL~Pspfpr~~F~~a~~vq~~~n~L~~~vS~D~~~~~~f   80 (373)
T d1m0wa2           1 PSKDQLNELIQEVNQWAITNGLSMYPPKFEENPSNASVSPVTIYPTPIPRKCFDEAVQIQPVFNELYARITQDMAQPDSY   80 (373)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCEECCTTGGGCTTEEEECCEESSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             98799999999999999971947436877789886145787952776888999999999999999999997240426899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 L~~~l~~~~~~D~~Ft~~L~~i~~~v~~~g~~~~q~i~Lgl~RSDYMld~~~~~~~~KQVE~NTIa~sfg~ls~~v~~lH  160 (373)
T d1m0wa2          81 LHKTTEALALSDSEFTGKLWSLYLATLKSAQYKKQNFRLGIFRSDYLIDKKKGTEQIKQVEFNTVSVSFAGLSEKVDRLH  160 (373)
T ss_dssp             HHHHHHHHHHHTTTTHHHHHHHHHHHTSCCSSCCCCCEEEEEEEEEEEEEETTEEEEEEEEEECSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCCCCCCCHHHHEEEEEEEHHHHHHHHHHHHHH
T ss_conf             99998767405889999999999999854446243258744301321477666523441230020020121888999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~l~~~~~~d~~~~~~~d~~~~~~~~~~~le~~~a~~~~~~l~g~KKvQq~La~pgvLe~Fl~d~~~~~~lr~tF~~ly~  240 (373)
T d1m0wa2         161 SYLNRANKYDPKGPIYNDQNMVISDSGYLLSKALAKAVESYKSQQKKIQQLLTDEGVLGKYISDAEKKSSLLKTFVKIYP  240 (373)
T ss_dssp             HHHHHTTSSCTTSCSSCGGGBCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHTTSHHHHTTTCCCHHHHHHHHTTCCCEEE
T ss_pred             HHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf             99985557788775016886545155189886666466776467652672103668898867988999999998504786


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 Ld~~~~g~~~~~~Al~~p~~~VLKPQrEGGGnniyg~dI~~~L~~l~~~e~~ayILMerI~Pp~~~~~~~~r~~~~~~~~  320 (373)
T d1m0wa2         241 LDDTKLGREGKRLALSEPSKYVLKPQREGGGNNVYKENIPNFLKGIEERHWDAYILMELIEPELNENNIILRDNKSYNEP  320 (373)
T ss_dssp             CSSSHHHHHHHHHHHHCGGGEEEEESSCSSCCCEEGGGHHHHHHTSCGGGGGGEEEEECCCCCCBCSCCEEETTEEECCC
T ss_pred             CCCCHHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEECCCEEEECC
T ss_conf             78502128999998619153897455557665401479999987478444113307854179988875997299011277


Q ss_pred             ----------------------------------------------------C
Q ss_conf             ----------------------------------------------------9
Q 003496          278 ----------------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------------~  278 (815)
                                                                          .
T Consensus       321 ~vSELGifG~~l~~~~~v~~N~~~G~LlRTK~~~~nEGGVaaG~g~lDS~~L~  373 (373)
T d1m0wa2         321 IISELGIYGCVLFNDEQVLSNEFSGSLLRSKFNTSNEGGVAAGFGCLDSIILY  373 (373)
T ss_dssp             BEEEEEEEEEEEECSSCEEEEEEEEEEEEEECCEEETTEEEECCEEECCEEEC
T ss_pred             EEECCCCCEEEEECCCEEEEECCEEEEEECCCCCCCCCCEECCEEECCCHHCC
T ss_conf             32033041899978977997165028896279988876810354223422009

>d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: tRNA-guanine transglycosylase
family: tRNA-guanine transglycosylase
domain: Queosine tRNA-guanine transglycosylase
species: Zymomonas mobilis [TaxId: 542]

Probab=100.00  E-value=0  Score=28043.68  Aligned_cols=1  Identities=0%  Similarity=-0.693  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~Fei~~~d~~AR~G~L~~~~g~i~TP~fmpv~t~g~v~~ltpd~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gglh   80 (372)
T d1r5ya_           1 RPRFSFSIAAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRPGAERIAKLGGLH   80 (372)
T ss_dssp             CCSCEEEEEEEETTEEEEEEEETTEEEEESEEECBCTTSSCTTCCHHHHHHTTCSCEEEEHHHHHHTTCHHHHHHTTCHH
T ss_pred             CCCEEEEEEECCCCEEEEEEEECCEEEECCEEEECCCCCCCCCCCHHHHHHCCCCEEECHHHHHHHCCCCHHHHHCCCHH
T ss_conf             99607999965585004899979977679978754778808847999999728988833188887587617877426513


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~f~~~~~~iltdsGg~q~~sl~~~~~~~~~gv~f~s~~~g~~~~ltpe~~i~~q~~ig~DI~~~Ldd~~~~~~~~~~~~~  160 (372)
T d1r5ya_          81 SFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKSHLDGSRHMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAAS  160 (372)
T ss_dssp             HHHTCCSCEEEECSHHHHC-CC-CCEEETTEEEC---------CBCHHHHHHHHHHHTCSEEECCCCCCCSSCCHHHHHH
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHH
T ss_conf             34204565200247654323223455577885353226872111000779999985088467522446653101678899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~rt~~w~~~~~~~~~~~~~~~~~~~lfgivqGg~~~dlR~~s~~~l~~~~~~G~aiGgl~~~~~~~~~~~~v~~~~~~  240 (372)
T d1r5ya_         161 SMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVPM  240 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHCEEEEEECCTTCHHHHHHHHHHHHHHCCSEEEECSCSSSSCHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHCCCC
T ss_conf             99999999999999875055667666321131541265688889999986213732122445675067788899850200


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 Lp~~kPr~l~Gvg~P~~il~~V~~GvD~FD~~~p~r~Ar~G~alt~~g~~~l~~~~~~~d~~Pl~~~C~C~~C~~~sraY  320 (372)
T d1r5ya_         241 LPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAY  320 (372)
T ss_dssp             SCTTSCEEETTCCSHHHHHHHHTTTCCEEECSHHHHHHHTTEECCTTCCEETTSGGGTTCCSCSSSSCCSHHHHHCCHHH
T ss_pred             CCCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCEEECCCCEEECCCCCCCCCCCCCCCCCCHHHCCCCHHH
T ss_conf             12011022047898789888360589954543113111136157259832321232335689869898992325159999


Q ss_pred             ---------------------------------------------------C
Q ss_conf             ---------------------------------------------------9
Q 003496          278 ---------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------~  278 (815)
                                                                         .
T Consensus       321 l~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~f~~~y~  372 (372)
T d1r5ya_         321 IHHLIRAGEILGAMLMTEHNIAFYQQLMQKIRDSISEGRFSQFAQDFRARYF  372 (372)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf             9877638836899999999999999999999999985999999999999649

>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: HDAC homologue
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=0  Score=28041.17  Aligned_cols=1  Identities=0%  Similarity=-0.891  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~k~~li~~~d~~~~~~g~~HPe~p~Rl~~i~~~L~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~~   80 (372)
T d1c3pa_           1 KKVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERCQCVPKG   80 (372)
T ss_dssp             CCEEEEECGGGGGSCCCTTCGGGSCCHHHHHHHHHHTTCCCGGGEEECCCCCHHHHTTTSCHHHHHHHHHHHHHTSCCTT
T ss_pred             CEEEEEECHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCC
T ss_conf             90899968201587897843959799999999999769987880771898999999871899999999974544467522


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~p~~~~~~~~a~~~~g~~~~a~~~~~~g~~a~~ppGG~HHA~~~~a~GFC~fNnvAiaa~~l~~~~~~R  160 (372)
T d1c3pa_          81 AREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKR  160 (372)
T ss_dssp             HHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTCEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHHHTTCCC
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCC
T ss_conf             31014688767878889999998753358897653224542241246534421024313640460999999998744674


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 V~ivD~DvHhGnGtq~if~~d~~V~~~SiH~~~~~~~p~~tG~~~e~G~~~g~g~~~NiPL~~g~~D~~y~~~~~~~l~p  240 (372)
T d1c3pa_         161 ILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEI  240 (372)
T ss_dssp             EEEEECSSSCCHHHHHHHTTCSSEEEEEEEECTTTSTTSSSCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             47874345677762577761477543000257777788888772236787665412414488655628999999986799


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~f~Pd~IvvsaG~D~~~~Dplg~l~lt~~~~~~~~~~~~~~~~~~~~vleGGY~~~~~a~~~~~~~~~l~g~~~~~~  320 (372)
T d1c3pa_         241 VKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPYALARAWTLIWCELSGREVPEK  320 (372)
T ss_dssp             HHHHCCCSEEEEECCSTTBTTCTTCSCCBCHHHHHHHHHHHHHHHCSCEEECCCCCCHHHHHHHHHHHHHHHHTCCCCSS
T ss_pred             HHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99866976899978816677686568868888999999999985899699975878588999999999999829999845


Q ss_pred             ---------------------------------------------------C
Q ss_conf             ---------------------------------------------------9
Q 003496          278 ---------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------~  278 (815)
                                                                         .
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  372 (372)
T d1c3pa_         321 LNNKAKELLKSIDFEEFDDEVDRSYMLETLKDPWRGGEVRKEVKDTLEKAKA  372 (372)
T ss_dssp             CCHHHHHHHHHSCCCCSSTTCCCGGGGGCSSCCCCCCCCCHHHHHHHHHHHC
T ss_pred             CCHHHHHHHCCCCHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             6877887631588777424467033200247855535778899999998509

>d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of family B DNA polymerases
species: Bacteriophage T4 [TaxId: 10665]

Probab=100.00  E-value=0  Score=28040.93  Aligned_cols=1  Identities=0%  Similarity=-1.690  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~fytnv~~~gn~il~rg~~~~G~r~~~~~~f~Py~y~~~~~~~~~ksl~G~~v~~v~f~s~~~~r~~~~~~~~~~~~~~   80 (372)
T d1noya_           1 DEFYISIETVGNNIVERYIDENGKERTREVEYLPTMFRHCKEESKYKDIYGKNCAPQKFPSMKDARDWMKRMEDIGLEAL   80 (372)
T ss_dssp             CCEEEEEEEETTEEEEEEECTTSCEEEEEEECCCSEECGGGGTCSSCTTTTCCCCCEECSSHHHHHHHHHHHHHHCTTCT
T ss_pred             CCCCEEEEEECCEEEEEEEECCCEEEEEEECCEEEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEE
T ss_conf             98661369999999999996599799999656058999858997858359908877857999999999997256663464


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~die~~~~~~~~~~~~~~~i~~I~~~~~~~~~~~~f~~~~~~~~~~~~~~~  160 (372)
T d1noya_          81 GMNDFKLAYISDTYGSEIVYDRKFVRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDDRFYVFDLLNSMYGSVSKWDA  160 (372)
T ss_dssp             HHHHHHHHHHHHHTCSCCCCCGGGCCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTTEEEEEEECCCSSCCCCCCCH
T ss_pred             ECCCCCEEEHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHEEECCCCEEEEEEECCCCCCCCCCCCC
T ss_conf             02343413312316545556623225773022002346688631010000222144159879999962656566556555


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~E~~lL~~F~~~~~~~dPDii~G~N~~~FD~pYL~~R~~~~~~~~~~~~~~~  240 (372)
T d1noya_         161 KLAAKLDCEGGDEVPQEILDRVIYMPFDNERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSP  240 (372)
T ss_dssp             HHHHSCGGGTCCCCCHHHHTTEEEEEESCHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGST
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             55433222346665545668759998099999999999999872888799970678616799999987456310111221


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~sy~L~~v~~~~l~~~K~~~~~~l~~~~~~d~~~l~~Yn  320 (372)
T d1noya_         241 IGRVKSKLLQNMYGSKEIYSIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLPYDGPINKLRETNHQRYISYN  320 (372)
T ss_dssp             TSCEEEEECCGGGCSCEEEEETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCCCCSSCGGGHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEECCCCCCEEEEECCCEEEEEEHHHEECCCCCCHHHHHHHHEEECCCCCCCCCCHHHHHHHHHCHHHHHEEC
T ss_conf             26521001101356522564033148975101200002330024344310001146777742249999874925702201


Q ss_pred             ---------------------------------------------------C
Q ss_conf             ---------------------------------------------------9
Q 003496          278 ---------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------~  278 (815)
                                                                         .
T Consensus       321 i~D~~L~~~L~~kl~~i~~~~~la~~~gvp~~~v~~~~~~~~~~~~~~l~~~  372 (372)
T d1noya_         321 IIDVESVQAIDKIRGFIDLVLSMSYYAKMPFSGVMSPIKTWDAIIFNSLKGE  372 (372)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHTCCGGGGGCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHCC
T ss_conf             9988999999998757999999999989398993749999999999986259

>d1qlpa_ e.1.1.1 (A:) Antitrypsin, alpha-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Serpins
superfamily: Serpins
family: Serpins
domain: Antitrypsin, alpha-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=28040.41  Aligned_cols=1  Identities=0%  Similarity=-0.826  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~Fa~~l~~~l~~~~~~~N~v~SP~si~~~La~l~~Ga~g~T~~el~~~L~~~~~~~~~~~~~~~~~~~~~~   80 (372)
T d1qlpa_           1 FNKITPNLAEFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEIPEAQIHEGFQELLRT   80 (372)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHCSSSCEEECHHHHHHHHHHHHTTCCHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             93220769999999999986129798299878999999999998546799999999709998778689999999999987


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~l~~~n~i~~~~~~~l~~~f~~~~~~~f~~~~~~~df~~~~~~~~~iN~wv~~~T~g~i~~~~~~~~~~t~l  160 (372)
T d1qlpa_          81 LNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVF  160 (372)
T ss_dssp             HSCSSCCCCEEEEEEEEEETTCCBCHHHHHHHHHTSCCEEEEECTTSHHHHHHHHHHHHHHHTTTSSCSCCCCCCTTCCE
T ss_pred             HHCCCCCHHHHHHEEEEECCCCCCCHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf             53247614451010023316776478999999987275241455444699999999999998579875545678974155


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~lina~~f~~~W~~~F~~~~t~~~~F~~~~~~~~~V~mm~~~~~f~~~~~~~l~~~~~~lp~~~~~~~~il~~~~~~l~~  240 (372)
T d1qlpa_         161 ALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFLPDEGKLQH  240 (372)
T ss_dssp             EEEEEEEECCCBSSCCCGGGCEEEEEESSSSCEEEEEEEEEEEEEEEEEETTTTEEEEEEEETTTEEEEEEEECTTCHHH
T ss_pred             HHHHHHEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCEEEEECCCCCCCEEEEEECCCCCHHH
T ss_conf             54323213043113566210445654036885489750000153111014667869995256777259999778679899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 l~~~L~~~~l~~~~~~~~~~~v~v~lPkF~i~~~~dl~~~L~~lGl~~~F~~~ad~~~i~~~~~l~vs~v~q~~~i~v~E  320 (372)
T d1qlpa_         241 LENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGVTEEAPLKLSKAVHKAVLTIDE  320 (372)
T ss_dssp             HHHHCCHHHHHHHHHCCCCEEEEEEEECEEEEEEEEHHHHTGGGTCCGGGSTTCCCTTTBSSSCCCCCEEEEEEEEEECS
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEECCHHHHHHHCCCHHHHCCHHHHCCCCCCCCCEEEEEEEEEEEEECC
T ss_conf             98764599999998735644789998789985211577877755946554225453176788981566378899999878


Q ss_pred             ---------------------------------------------------C
Q ss_conf             ---------------------------------------------------9
Q 003496          278 ---------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------~  278 (815)
                                                                         .
T Consensus       321 ~Gteaaa~t~~~~~~~s~~~~f~~drPFlf~I~~~~t~~iLf~G~v~~Pt~~  372 (372)
T d1qlpa_         321 KGTEAAGAMFLEAIPMSIPPEVKFNKPFVFLMIEQNTKSPLFMGKVVNPTQK  372 (372)
T ss_dssp             CSSSSCCCCCCCCCCSSCCCEEECCSCEEEEEEETTTCCEEEEEEESCTTCC
T ss_pred             CCCCHHHHHEEECCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEECCCCCC
T ss_conf             8400323210102357899759926998999999899939999992799899

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=0  Score=28039.65  Aligned_cols=1  Identities=100%  Similarity=0.103  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~g~~~~gp~~~~~~~~~~d~~~~~~td~g~~~~~~~~f~~~~~~~~~gg~~r~~~~~~lp~~~~~a~~~~~L~   80 (372)
T d1j58a_           1 PQPIRGDKGATVKIPRNIERDRQNPDMLVPPETDHGTVSNMKFSFSDTHNRLEKGGYAREVTVRELPISENLASVNMRLK   80 (372)
T ss_dssp             CCSEETTEECCCCSCCCHHHHHHCHHHHSCCTTCBSCCCCCEECGGGSCCEEETTEEEEEECTTTCTTCSSCEEEEEEEC
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEHHHCHHHHHHHHEEEEEC
T ss_conf             98604899998889877666531864458997766755105642133544236797147864443800331100589988


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 pga~~~pH~H~~ae~~yVl~G~~~vt~Vd~~G~~~~~~l~~GDv~~~P~G~~H~i~n~~dg~e~l~vf~~~~~~~~~~f~  160 (372)
T d1j58a_          81 PGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEFLLVFDDGSFSENSTFQ  160 (372)
T ss_dssp             TTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEEEEEEEEEEEEESCTTCCGGGEEE
T ss_pred             CCCCCCCCCCCCCCEEEEEECEEEEEEEECCCCEEEEEECCCCEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEE
T ss_conf             99676873637643899995779999994899489988536988998999779997179995899997788866653043


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~p~evLa~af~v~~~~~~~i~~~e~~i~~~~~p~~~~~~~~~~~~g~~~~~~~~~l~~q~P~~~~gG~~~~~d  240 (372)
T d1j58a_         161 LTDWLAHTPKEVIAANFGVTKEEISNLPGKEKYIFENQLPGSLKDDIVEGPNGEVPYPFTYRLLEQEPIESEGGKVYIAD  240 (372)
T ss_dssp             HHHHHHTSCHHHHHHHHTCCTGGGTTSCSSCCSEECCCCCCCHHHHCCCCTTCCCSSCSEEEGGGSCCEECSSEEEEEES
T ss_pred             ECCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEC
T ss_conf             10121359878998761999899863431223312456887423454147788998763230224688415774679926


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~fp~~~~is~~~~~l~PG~~~~~H~Hp~a~E~~yvl~G~g~v~v~~~~g~~~t~~l~~GDv~~iP~g~~H~i~N~g~e  320 (372)
T d1j58a_         241 STNFKVSKTIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGDE  320 (372)
T ss_dssp             TTTSTTCCSCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEECTTCBEEEEECSSS
T ss_pred             CCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEECEEEEEEECCCCCEEEEEECCCCEEEECCCCEEEEEECCCC
T ss_conf             33477667506999998899645887799972999999790999998579806899825985899899974999987999


Q ss_pred             ---------------------------------------------------C
Q ss_conf             ---------------------------------------------------9
Q 003496          278 ---------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------~  278 (815)
                                                                         -
T Consensus       321 ~l~~l~vf~s~~~~~i~~~~~l~~~P~~vv~~~~~~~~e~~~~l~~~k~~vv  372 (372)
T d1j58a_         321 PLVFLEIFKDDHYADVSLNQWLAMLPETFVQAHLDLGKDFTDVLSKEKHPVV  372 (372)
T ss_dssp             CEEEEEEESSSSCCCEEHHHHHHTSCHHHHHHHHTCCHHHHTTCCSSCCSBC
T ss_pred             CEEEEEEECCCCCCEEEHHHHHHHCCHHHHHHHHCCCHHHHHHHHHCCCCCC
T ss_conf             8899999789996545687876549999999885969999998875687669

>d1vkpa_ d.126.1.6 (A:) Agmatine iminohydrolase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Porphyromonas-type peptidylarginine deiminase
domain: Agmatine iminohydrolase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=0  Score=28038.42  Aligned_cols=1  Identities=0%  Similarity=-0.726  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~tp~~~gfrmPaEwe~~~~~~l~wP~~~~~w~~~~~~~~~~~~~i~~~Ia~~e~V~vl~~~~~~~~~~~~~~~nV~~~~   80 (372)
T d1vkpa_           1 RESPAEHGYYMPAEWDSHAQTWIGWPERQDNWRHNALPAQRVFAGVAKAISKFEPVTVCASPAQWENARKQLPEDIRVVE   80 (372)
T ss_dssp             CCCGGGGTCBCCCTTSCEEEEEECCCCCTTTSTGGGHHHHHHHHHHHHHHHTTSCEEEEECTTTHHHHHHHSCTTSEEEE
T ss_pred             CCCHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCEEEE
T ss_conf             97935549976898563615999868998621345556899999999997389849999797999999975746728999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~dD~W~RD~GPifv~~~~~~~~~~~~~~~~~vdf~FN~wG~k~~~~~~~~~~d~~~~~~ia~~~~~~~~~~~lvlEGG  160 (372)
T d1vkpa_          81 MSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSMILEGG  160 (372)
T ss_dssp             CCCSSCCHHHHSCEEEECCC-------CCSEEEEEEECCTTTHHHHSSBSCCTTHHHHHHHHHHHHTCCEEEEEEECCGG
T ss_pred             CCCCCHHHHCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCC
T ss_conf             15898788614877998088642334678557860201366655555421345677999987412168744567166389


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~ie~dG~GtlltTe~clln~nRNP~~sk~~ie~~Lk~~lGv~~viwl~~g~~~~DdTdGHID~~arFi~~~til~~~~~d  240 (372)
T d1vkpa_         161 SIHVDGEGTCLVTEECLLNKNRNPHMSKEQIEEELKKYLGVQSFIWLPRGLYGDEDTNGHIDNMCCFARPGVVLLSWTDD  240 (372)
T ss_dssp             GEEECSSSEEEEEHHHHTCTTTCTTSCHHHHHHHHHHHHCCCEEEEESCCCTTCTTTTCCGGGTEEEEETTEEEEEECCC
T ss_pred             CEEECCCCCEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHEEEECCCCEEEEEECCC
T ss_conf             77989996299756782077889998999999999986297559997670027988765500058971799079873288


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~y~~~~~~~~~L~~~~d~~g~~~~ii~lp~p~~~~~~~~~~~~~~~~~~~~~~~~g~~l~aSY~Nfli~N~~VivP  320 (372)
T d1vkpa_         241 ETDPQYERSVEALSVLSNSIDARGRKIQVIKLYIPEPLYMTEEESSGITQDGEAIPRLAGTRLAASYVNFYIANGGIIAP  320 (372)
T ss_dssp             TTSTHHHHHHHHHHHHHTCBCTTSCBCEEEEEECCSCCBCCHHHHHTSCCCSSBCCCCTTCBCCCCTTCCEEETTEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEC
T ss_conf             76855899999999999887505884317983034540003200145334666554568988655347999999999995


Q ss_pred             ---------------------------------------------------C
Q ss_conf             ---------------------------------------------------9
Q 003496          278 ---------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------~  278 (815)
                                                                         .
T Consensus       321 ~ygd~~~D~~A~~~l~~~fP~r~Vi~Id~~~~i~~~gG~iHCiT~q~Pa~~~  372 (372)
T d1vkpa_         321 QFGDPIRDKEAIRVLSDTFPHHSVVGIENAREIVLAGGNIHCITQQQPAEPT  372 (372)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTSEEEEETTTHHHHTTTCCTGGGEEEEECCCC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCEEECCCCCCCCCC
T ss_conf             7989430799999999988898799827889998579853575777779999

>d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Polyketide synthase PKS18
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=0  Score=28036.45  Aligned_cols=1  Identities=0%  Similarity=-0.493  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~p~~~a~I~g~g~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~ri~~~tGI~~R~~~~~~~~~~~~~~~~~~~~   80 (372)
T d1teda_           1 AQLPPAPPTTVAVIEGLATGTPRRVVNQSDAADRVAELFLDPGQRERIPRVYQKSRITTRRMAVDPLDAKFDVFRREPAT   80 (372)
T ss_dssp             CCCCCCCCCCEEEEEEEEEECCSCEEEHHHHHHHHHTC----CCTTHHHHHHHTSCCSEEECSSCTTSTTHHHHTTCSSC
T ss_pred             CCCCCCCCCCEEEEEEEEEECCCEEECHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHCCCC
T ss_conf             99897999844899988996799178399999999860678177899999998359863514516543461445414887


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~r~~~~~e~~~~la~~Aa~~aL~~ag~~~~dId~lI~~t~t~~~~P~~a~~v~~~LGl~~~~~~~~~~~~gC~g~~~a  160 (372)
T d1teda_          81 IRDRMHLFYEHAVPLAVDVSKRALAGLPYRAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNA  160 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGEEEEEEEESSCCCSSCHHHHHHHHHTCCTTCEEEEEESCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH
T ss_conf             88888877737999999999999997599988998899964689888668899876514687625766004674179999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 L~~A~~~l~sg~~~~~LVV~~E~~s~~~~~~d~~~~~~~~~lfGDGAaA~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (372)
T d1teda_         161 LGTATNYVRAHPAMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVVVRSSFSQLLDNTE  240 (372)
T ss_dssp             HHHHHHHHHHSTTCEEEEEEEEECGGGCCCCSSHHHHHHHHHBCEEEEEEEEEEECTTSCCCTTCEEEEEEEEEECTTCT
T ss_pred             HHHHHHHHHCCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf             99999998559976521653112002104777613565655413632047750477645567750587035642168876


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~did~~i~Hq~~~~i~~~i~~~Lgl~~ek~~~s~~~l  320 (372)
T d1teda_         241 DGIVLGVNHNGITCELSENLPGYIFSGVAPVVTEMLWDNGLQISDIDLWAIHPGGPKIIEQSVRSLGISAELAAQSWDVL  320 (372)
T ss_dssp             TSEEEEEETTEEEEEECTTHHHHHHHHHHHHHHHHHHHTTCCGGGCSCEEECCSCHHHHHHHHHHHTCCGGGGHHHHHHH
T ss_pred             CCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             55456778776320014777999998889999987876399878742232247659999999998198978816568888


Q ss_pred             ---------------------------------------------------C
Q ss_conf             ---------------------------------------------------9
Q 003496          278 ---------------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------------~  278 (815)
                                                                         .
T Consensus       321 ~~~GN~~sasip~~L~~~l~~g~~~~g~d~vll~~fG~G~s~~~~ll~~~~~  372 (372)
T d1teda_         321 ARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIRR  372 (372)
T ss_dssp             HHHCBCTHHHHHHHHHHHHHSCSSSSSSEEEEEEEEETTTEEEEEEEEECCC
T ss_pred             HCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHEEECC
T ss_conf             4047748879999999999838878899889999995899589876325229

>d1mkfa_ b.116.1.1 (A:) Viral chemokine binding protein m3 {Murid herpesvirus 4, MuHV-4 [TaxId: 33708]}

class: All beta proteins
fold: Viral chemokine binding protein m3
superfamily: Viral chemokine binding protein m3
family: Viral chemokine binding protein m3
domain: Viral chemokine binding protein m3
species: Murid herpesvirus 4, MuHV-4 [TaxId: 33708]

Probab=100.00  E-value=0  Score=27969.49  Aligned_cols=1  Identities=0%  Similarity=-1.091  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 hssgvstqsvdlsqikrgdeiqahcltpaetevtecagilkdvlsknlhelqglcnvknkmgvpwvsveelgqeiitgRL   80 (371)
T d1mkfa_           1 HSSGVSTQSVDLSQIKRGDEIQAHCLTPAETEVTECAGILKDVLSKNLHELQGLCNVKNKMGVPWVSVEELGQEIITGRL   80 (371)
T ss_dssp             CCSEEEECCCCTTTSTTHHHHHHHHSSSCCSSTHHHHHHHHHHHHHCTTGGGGGCSEEEEEEEECEEEGGGTEEEEEECC
T ss_pred             CCCCCCCCCCCHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHCCCC
T ss_conf             98774343323888445425665207821003677778899987642887751430244468846569884125500676


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 P~Ps~~~~~~~~~vrVLV~AEs~tpee~P~~~~~A~~~m~T~~~~~~LsD~N~~F~s~~~~vW~i~i~k~~VD~~mLT~A  160 (371)
T d1mkfa_          81 PFPSVGGTPVNDLVRVLVVAESNTPEETPEEEFYAYVELQTELYTFGLSDDNVVFTSDYMTVWMIDIPKSYVDVGMLTRA  160 (371)
T ss_dssp             CCSSCCCCTTSCEEEEEEEEECCCCSSCCSSCCCEEEEEECSSCEEEECGGGEEEEETTEEEEEEEEEGGGSSTTCEEEE
T ss_pred             CCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHEEEEEEEEEECCCCEEEEECCEEEEEEECCHHEECHHHHHHH
T ss_conf             77755787667648999995179987880788765441044554785024643787400279999646001122143355


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~FL~~~P~~k~T~mi~Y~~TFTWCGeigai~e~~~P~PS~~A~~PVC~~~~RY~~~kF~~~DGC~~Et~~~~~s~i~P~~  240 (371)
T d1mkfa_         161 TFLEQWPGAKVTVMIPYSSTFTWCGELGAISEESAPQPSLSARSPVCKNSARYSTSKFCEVDGCTAETGMEKMSLLTPFG  240 (371)
T ss_dssp             EESSCCTTCEEEEEEEEETTEEEEEEEEEECTTSCCBCCSEEEEETTSSGGGGSSSTTTTTTTCCGGGTSCCEEECSCTT
T ss_pred             HHHHHCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEECCCCCCCCCCCCCCEEECCCC
T ss_conf             67754767608998436565053403254368778997610038542004665347524136743000555640555578


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~P~~qa~mNTC~C~~KY~~~~L~~~~~i~i~~ia~~~~~~~P~YVm~~YF~St~~N~~~~s~~L~~C~~~mtsH~G~~~~  320 (371)
T d1mkfa_         241 GPPQQAKMNTCPCYYKYSVSPLPAMDHLILADLAGLDSLTSPVYVMAAYFDSTHENPVRPSSKLYHCALQMTSHDGVWTS  320 (371)
T ss_dssp             SCSSCEEEESTHHHHHHCSSCCCCCSCEEEEEEECGGGCCSCEEEEEEEECCCCCCTTSCCCCEEEEEEEEEEETTEEEE
T ss_pred             CCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCEEE
T ss_conf             98440303532058882476577334188876225233467406788750666667668898644899998743673013


Q ss_pred             --------------------------------------------------C
Q ss_conf             --------------------------------------------------9
Q 003496          278 --------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------~  278 (815)
                                                                        .
T Consensus       321 ~~s~QCP~~~~~G~~q~VL~~~~~pt~~~~iVGvsi~~eGQq~Ri~Y~Gdh  371 (371)
T d1mkfa_         321 TSSEQCPIRLVEGQSQNVLQVRVAPTSMPNLVGVSLMLEGQQYRLEYFGDH  371 (371)
T ss_dssp             CCCSSCCEEEEECSSTTEEEEEECGGGGGGEEEEEEEETTEEEEEESSCCC
T ss_pred             EECCCCCEEEEECCCEEEEEEEECCCCCCCEEEEEEEECCCEEEEECCCCC
T ss_conf             313557556730676068999982466764056999974700021012589

>d1r53a_ d.258.1.1 (A:) Chorismate synthase, AroC {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Chorismate synthase, AroC
superfamily: Chorismate synthase, AroC
family: Chorismate synthase, AroC
domain: Chorismate synthase, AroC
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=27968.19  Aligned_cols=1  Identities=0%  Similarity=-0.627  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 MnsfG~~lr~ttfGESHG~alg~vidG~PaG~~i~~~~I~~~L~RR~pG~~~~~t~R~E~D~veilSGv~~G~TtGsPI~   80 (371)
T d1r53a_           1 MSTFGKLFRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTRRRPGQSKLSTPRDEKDRVEIQSGTEFGKTLGTPIA   80 (371)
T ss_dssp             CCEECSSSEEEEECCTTSSEEEEEEECCCTTCBCCGGGTHHHHHTTCC------------CCCEECSSEETTEECSSCEE
T ss_pred             CCCCCCCEEEEEEECCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCEE
T ss_conf             98776534898415478884489980508588838999999996459999998866899984899243208978455207


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~I~N~d~~s~dy~~~~~~pRPGHAD~~~~~kyg~~d~~gggrsSaReTa~rvaaGaia~~~L~~~~gI~v~s~V~~IG~  160 (371)
T d1r53a_          81 MMIKNEDQRPHDYSDMDKFPRPSHADFTYSEKYGIKASSGGGRASARETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGE  160 (371)
T ss_dssp             EEEEC-----------------------------------------CCCHHHHHHHHHHHHHHHHTTCCEEEEEEEEETT
T ss_pred             EEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECC
T ss_conf             88814532310010133324668741776764486533565415688899999999999999998489799999998611


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 i~~~~~~~d~~~~~~~~~~~~~~~~~~~~vrc~D~~~~~~m~~~I~~ak~~gDSlGGivev~~~gvP~GLG~p~fdkLda  240 (371)
T d1r53a_         161 IKMNRDSFDPEFQHLLNTITREKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCFDKLEA  240 (371)
T ss_dssp             EECCCCTTCHHHHHHHHHCCHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHTTCCCCEEEEEEEESCCTTCSBTTTBCHHH
T ss_pred             EECCCCCCCHHHHHCCCHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCH
T ss_conf             77154345612332214465655553196107886888999999999972599755089999970589877720044145


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~LA~A~mSIpAVKgVEfG~GF~~a~~~GSe~nD~~~~~~~~g~~~~~tN~aGGi~GGiSnG~pi~~rva~KP~sSi~~~q  320 (371)
T d1r53a_         241 MLAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEKETNRLRTKTNNSGGVQGGISNGENIYFSVPFKSVATISQEQ  320 (371)
T ss_dssp             HHHHHHHTSTTBCCCEETTTTGGGGSCHHHHHCSBC--------CBCCCCSCSEETTEECSSCEEEEEEECCC-------
T ss_pred             HHHHHHHCCCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCC
T ss_conf             88887742410025650456117645562247762205788864245688777546764896069999857810046877


Q ss_pred             --------------------------------------------------C
Q ss_conf             --------------------------------------------------9
Q 003496          278 --------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------~  278 (815)
                                                                        .
T Consensus       321 ~Tvd~~~~~~~~~~~gRhDpc~vpra~pV~Eam~alvlad~~L~~~~~d~~  371 (371)
T d1r53a_         321 KTATYDGEEGILAAKGRHDPAVTPRAIPIVEAMTALVLADALLIQKARDFS  371 (371)
T ss_dssp             ----------------CCCSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             547757978776106988981726548999999999999999998516789

>d1to6a_ c.141.1.1 (A:) Glycerate kinase GlxK {Neisseria meningitidis, (serogroup A) [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Glycerate kinase I
superfamily: Glycerate kinase I
family: Glycerate kinase I
domain: Glycerate kinase GlxK
species: Neisseria meningitidis, (serogroup A) [TaxId: 487]

Probab=100.00  E-value=0  Score=27966.96  Aligned_cols=1  Identities=0%  Similarity=0.735  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 MkiliApDsFKgslsA~ea~~ai~~g~~~~~p~~~~~~~P~aDGGEGt~dal~~~~~g~~~~~~v~gplg~~v~a~~~~~   80 (371)
T d1to6a_           1 MKIVIAPDSFKESLTAQQVAEAIKRGFQQSIADVECLLCPVGDGGEGTVDAIRHSLDLEEKCLQVTGSFGQKEVMRYFQK   80 (371)
T ss_dssp             CEEEECCCCBTTTBCHHHHHHHHHHHHHHHCTTCEEEECCCCSSSTTHHHHHHTTSCCEEEEEEEECTTSSEEEEEEEES
T ss_pred             CEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCEEEEEEEECCCCCCEEEEEECC
T ss_conf             90999943888862899999999999998599988999730648543999999863997999999899998157899637


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~tAvIE~A~asGL~l~~~~~r~p~~~tT~G~GelI~~Al~~G~~~iilglGGSAT~DgG~G~L~ALG~~f~D~~g~~l~  160 (371)
T d1to6a_          81 EQLALFEVADLVGLGKIPLEKRNPLQIQTRGIGELIRHLISQEIKEIYIGVGGTASNDGGIGIAAGLGYQFYDEDGNALP  160 (371)
T ss_dssp             SSEEEEETHHHHBGGGSCTTSCCTTSCCCHHHHHHHHHHHHTTCCEEEEEECSBCCCSTTHHHHHTTTCEEECTTSCBCC
T ss_pred             CCEEEEHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCEECCCCCCCC
T ss_conf             87543016663676303887777112246119999999997699769997158636616789999614536888999888


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~g~~L~~i~~id~~~~~~~l~~v~~~ia~DV~npL~G~~GAa~vfgpQKGa~~~~v~~le~~l~~~a~~~~~~~~~~~g  240 (371)
T d1to6a_         161 ACGQSLLNLASVSTENRYKIPEDVHIRILADVVSPLCGHQGATYTFGKQKGLDSTMFEVVDQAIQDFYEKVSPATLKLKG  240 (371)
T ss_dssp             SSGGGGGTCCEEECSSCCCCCTTCEEEEEESCCCCSSSTTSHHHHHSGGGTCCGGGHHHHHHHHHHHHHHHCGGGGGCTT
T ss_pred             CCCHHHHHHHCCCCCCCCCHHHCCEEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCCC
T ss_conf             86153675002662368711342849999556765547878645650445887899999999999999984311015678


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~gaAGG~~~~l~~~l~a~~~~G~~~v~~~~~l~~~i~~aDlVITGEG~~D~QSl~GK~p~~va~~ak~~~pviai~G~v~  320 (371)
T d1to6a_         241 AGAGGGIAGGLCAFAQASIVSGIDTCLDLIDFDKKVSDVDLVIVGEGRLDRQSLAGKAPIGVAKRTPVGVPVVAICGSLV  320 (371)
T ss_dssp             TTTTTTHHHHHHHHSCCEEEEHHHHHHHHTTHHHHTTTCSEEEECCSEECSTTTTTCHHHHHHTTSCTTCCEEEEESEEC
T ss_pred             CCCHHHHHHHHHHHHCCEECCCHHHHHHHHCHHHHHCCCCEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             63102578999999588846509999988599978356998997887552321265767999999767998899977557


Q ss_pred             --------------------------------------------------C
Q ss_conf             --------------------------------------------------9
Q 003496          278 --------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------~  278 (815)
                                                                        -
T Consensus       321 ~~~~~~~~~Gi~~~~si~~~~~~l~~a~~~a~~~L~~~a~~i~r~l~~~~~  371 (371)
T d1to6a_         321 EDLPSLPFENIQAAFSILEKSEPLEDSLKNASLYLEHTASNIGHLLNMPKI  371 (371)
T ss_dssp             TTCCCSSBTTEEEEEECCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             CCHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             886678754962999758899999999998999999999999999842379

>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: Citrate synthase
superfamily: Citrate synthase
family: Citrate synthase
domain: Citrate synthase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=0  Score=27966.51  Aligned_cols=1  Identities=0%  Similarity=-1.158  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~rGL~gv~v~~T~Is~idg~~G~L~YRG~~i~dLa~~~sfEeVa~LL~~G~lP~~~el~~f~~~l~~~~~lp~~~~~~~   80 (371)
T d1aj8a_           1 LAKGLEDVYIDQTNICYIDGKEGKLYYRGYSVEELAELSTFEEVVYLLWWGKLPSLSELENFKKELAKSRGLPKEVIEIM   80 (371)
T ss_dssp             CCGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             CCCCCCCCEEEEEECCEEECCCCEEEECCEEHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             99777998162686712768988799988769998646999999999977979899999999999997168988999998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~p~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~a~~~~i~~~~~~~~~~~~~~~p~~~~~~a~~~l~~~  160 (371)
T d1aj8a_          81 EALPKNTHPMGALRTIISYLGNIDDSGDIPVTPEEVYRIGISVTAKIPTIVANWYRIKNGLEYVPPKEKLSHAANFLYML  160 (371)
T ss_dssp             HHSCTTCCHHHHHHHHHHHHHHHSTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             86114641267777776410110100124310146788899999999999999999837998879860056899987652


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~g~~~~~~~~~~l~~~Lvl~aDHg~n~Stfa~r~vaSt~~d~~~a~~ag~~al~G~~hgga~~~~~~~~~~~~~~~~~~~  240 (371)
T d1aj8a_         161 HGEEPPKEWEKAMDVALILYAEHEINASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAVEEAIKQFMEIGSPEKVEE  240 (371)
T ss_dssp             HSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHHHHHHHHHHHHCSGGGHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf             38878879999999999983677777620656654115775202888888871542011016799999985065420699


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~v~~~l~~~~~i~GfGH~vy~~~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pNvd~~~~~l~~~lg~p  320 (371)
T d1aj8a_         241 WFFKALQQKRKIMGAGHRVYKTYDPRARIFKKYASKLGDKKLFEIAERLERLVEEYLSKKGISINVDYWSGLVFYGMKIP  320 (371)
T ss_dssp             HHHHHHHHTCCCTTBCCSSCSSCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCCBCTTTTHHHHHHTTTCC
T ss_pred             HHHHHHHCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf             99998624776544472211466606889999887630003568999999999987421798838188999999983998


Q ss_pred             --------------------------------------------------C
Q ss_conf             --------------------------------------------------9
Q 003496          278 --------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------~  278 (815)
                                                                        .
T Consensus       321 ~~~~~~lf~~~R~~G~~AH~~Eq~~~~~l~RP~~~YvG~~~~~~~~i~~r~  371 (371)
T d1aj8a_         321 IELYTTIFAMGRIAGWTAHLAEYVSHNRIIRPRLQYVGEIGKKYLPIELRR  371 (371)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHTTCCCCCCEEEECSCCCBCCCCGGGCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCHHHCC
T ss_conf             566669999999999999999998679973855401699899987767659

>d1n7oa1 a.102.3.2 (A:170-540) Hyaluronate lyase {Streptococcus pneumoniae [TaxId: 1313]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Chondroitin AC/alginate lyase
family: Hyaluronate lyase-like catalytic, N-terminal domain
domain: Hyaluronate lyase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=100.00  E-value=0  Score=27966.14  Aligned_cols=1  Identities=0%  Similarity=-0.659  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~d~y~~lr~~w~~~~~G~~~~~~~d~~~~~~~~~l~~~a~~~~~~~~~~~~~~~lw~dl~~~~~~~~~~~~~~rL~~mA   80 (371)
T d1n7oa1           1 VKDTYTDRLDDWNGIIAGNQYYDSKNDQMAKLNQELEGKVADSLSSISSQADRIYLWEKFSNYKTSANLTATYRKLEEMA   80 (371)
T ss_dssp             CCSHHHHHHHHHHHHHTCGGGCCTTCHHHHHHHHHHHHHHHHHHHHSCCSSSCSSSCGGGCCTTSTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             96489999999999863745677687899999999999999999872135677777789987775147999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~ay~~pgs~lY~d~~l~~~I~~al~~l~~~~y~~~~~~~gNWw~~~Ig~P~~l~~~lill~~~l~~~~~~~~~~~i~~~~  160 (371)
T d1n7oa1          81 KQVTNPSSRYYQDETVVRTVRDSMEWMHKHVYNSEKSIVGNWWDYEIGTPRAINNTLSLMKEYFSDEEIKKYTDVIEKFV  160 (371)
T ss_dssp             HHHTCTTSTTTTCHHHHHHHHHHHHHHHHHTSSTTCCCCSCHHHHHTHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHC
T ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf             99859998553699999999999999997089888888898303640758999999988311169999999999999867


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 p~p~~~~~~~~~~~~~TGaN~vd~a~~~i~~glL~~d~~~v~~a~~~i~~v~~~v~~gdG~~~DgSf~qH~~~~Y~G~YG  240 (371)
T d1n7oa1         161 PDPEHFRKTTDNPVKALGGNLVDMGRVKVIAGLLRKDDQEISSTIRSIEQVFKLVDQGEGFYQDGSYIDHTNVAYTGAYG  240 (371)
T ss_dssp             CCTTEECTTSSSCEECCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGGSCCSSSSEECTTSCEEETTTEECTTTHH
T ss_pred             CCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCEECCCCEECCCCEECCCCCH
T ss_conf             88212035677866064116999899999999986799999999999887741102688440377601257622167513


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~l~~~~~~~~~l~gT~~~~~~~~~~~l~~~i~~g~~~~~~~G~~~d~v~GR~ISR~~~~~~~~g~~~~~~~~~l~~~~  320 (371)
T d1n7oa1         241 NVLIDGLSQLLPVIQKTKNPIDKDKMQTMYHWIDKSFAPLLVNGELMDMSRGRSISRANSEGHVAAVEVLRGIHRIADMS  320 (371)
T ss_dssp             HHHHHHHHHHHHHHTTSSSCCCHHHHTHHHHHHHHTTGGGEETTEECGGGSGGGGGCTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             99999999999997799888897899999999995433010555015557886225788666414899999999985149


Q ss_pred             --------------------------------------------------C
Q ss_conf             --------------------------------------------------9
Q 003496          278 --------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------~  278 (815)
                                                                        .
T Consensus       321 ~~~~~~~~~~~iK~~i~~~~~~~~~~~~~~~~~~~~~~~ll~d~~i~~~p~  371 (371)
T d1n7oa1         321 EGETKQRLQSLVKTIVQSDSYYDVFKNLKTYKDISLMQSLLSDAGVASVPR  371 (371)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSSSCGGGGCCSHHHHHHHHHHHHCTTSCCCCC
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf             999999999999999966875452225345789999999865898898998

>d1f1sa1 a.102.3.2 (A:249-619) Hyaluronate lyase {Streptococcus agalactiae [TaxId: 1311]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Chondroitin AC/alginate lyase
family: Hyaluronate lyase-like catalytic, N-terminal domain
domain: Hyaluronate lyase
species: Streptococcus agalactiae [TaxId: 1311]

Probab=100.00  E-value=0  Score=27966.12  Aligned_cols=1  Identities=0%  Similarity=-1.590  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~d~y~~l~~~w~~~~~G~~~~d~~d~~~~~~~~~~~~~a~~~~~~~~~~~~~~~lw~dl~~~~~s~~~~~~~~rL~~mA~   80 (371)
T d1f1sa1           1 EDNFTKLLDKWNDVTIGNYVYDTNDSNMQKLNQKLDETNAKNIEAIKLDSNRTFLWKDLDNLNNSAQLTATYRRLEDLAK   80 (371)
T ss_dssp             CSHHHHHHHHHHHHHTCGGGCCTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCSCSCGGGCCTTSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             97699999999998638766786677899999999999999998612676656667899977752589999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 aY~~pgs~ly~d~~l~~~I~~aL~~l~~~~y~~~~~~~~~~NWW~~eIg~P~~l~~~lill~d~l~~~~~~~~~~~i~~~  160 (371)
T d1f1sa1          81 QITNPHSTIYKNEKAIRTVKESLAWLHQNFYNVNKDIEGSANWWDFEIGVPRSITGTLSLMNNYFTDAEIKTYTDPIEHF  160 (371)
T ss_dssp             HHTCTTSTTTTCHHHHHHHHHHHHHHHHHTSSTTCCCCTTSCHHHHHTHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHH
T ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             98499985547999999999999999983899876688989861123175799999998720015999999999999987


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~p~p~~~~~~~~~~~~~TGaN~vd~a~~~i~~glL~~d~~~v~~a~~~i~~v~~~v~~gdG~~~DgSfiqH~~v~Y~G~Y  240 (371)
T d1f1sa1         161 VPDAEYFRKTLVNPFKALGGNLVDMGRVKIIEGLLRKDNTIIEKTSHSLKNLFTTATKAEGFYADGSYIDHTNVAYTGAY  240 (371)
T ss_dssp             CCCTTEESTTSSCCEECCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCCBSSSSEEBTTSCEEETTTEECTTTH
T ss_pred             CCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCHHCCCCEECCCCC
T ss_conf             78813322567886636522699999999999998289999999999876561103578723047661004670006762


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 G~~~l~~~~~~~~~l~gT~~~~~~~~~~~l~~~i~~g~~~~~~~g~~~~~v~GR~IsR~~~~~~~~g~~~~~~~~~l~~~  320 (371)
T d1f1sa1         241 GNVLIDGLTQLLPIIQETDYKISNQELDMVYKWINQSFLPLIVKGELMDMSRGRSISREAASSHAAAVEVLRGFLRLANM  320 (371)
T ss_dssp             HHHHHHHHHHHHHHHTTSTTCCCHHHHHHHHHHHHHTTGGGEETTEECGGGSGGGGGCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             39999999999999767988888789999999999700456357643565677622478876632799999999987334


Q ss_pred             --------------------------------------------------C
Q ss_conf             --------------------------------------------------9
Q 003496          278 --------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------~  278 (815)
                                                                        +
T Consensus       321 ~~~~~~~~~~~~vK~~i~~~~~~~~~~~~~~~~~~~~~~~ll~d~~I~~~p  371 (371)
T d1f1sa1         321 SNEERNLDLKSTIKTIITSNKFYNVFNNLKSYSDIANMNKLLNDSTVATKP  371 (371)
T ss_dssp             CCSHHHHHHHHHHHHHHHHCCSSCGGGGCCSHHHHHHHHHHHHCTTSCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf             989999999999999984587644100645599999999985578888898

>d1c8ba_ c.56.1.2 (A:) Germination protease {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: HybD-like
family: Germination protease
domain: Germination protease
species: Bacillus megaterium [TaxId: 1404]

Probab=100.00  E-value=0  Score=27965.94  Aligned_cols=1  Identities=0%  Similarity=-0.960  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 m~~~~~l~~y~iRTDLAlEa~E~~~e~~~~~~~~~ei~GV~~~e~~~~~ikiT~V~I~e~Ga~~mgKp~G~YiTiEap~l   80 (371)
T d1c8ba_           1 MEKELDLSQYSVRTDLAVEAKDIALENQPKPNNQSEIKGVIVKEKEEQGVKISMVEITEEGAEAIGKKKGRYVTLESVGI   80 (371)
T ss_dssp             CCCCCCCCCCCCCCCCTTHHHHHHHHHCCC---------CCCSEEEEEEEETTEEEEEEEECHHHHTTTTSCCEEEEEEE
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEEEEECCHHHHHHCCCCCCEEEEECCCC
T ss_conf             98655521143537878988998865320113467668769888862986899999782689985899851799846877


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~D~~~~~e~~~~v~a~~l~~l~~~~~~~~~~~vLVVGLGN~~VTPDALGP~vv~~l~VTRHL~~~~p~~~~~g~r~Vs  160 (371)
T d1c8ba_          81 REQDTEKQEEAMEEVFAKELNFFIKSLNIPDDASCLVVGLGNLSVTPDALGPKAVDNLLITRHLFELQPESVQDGFRPVS  160 (371)
T ss_dssp             CCCSSSSSSHHHHHHHHHHHHHHHHHTTCCTTCCEEEEECSCSSSGGGCHHHHHHTTCCCCHHHHHHSCCSSCSSCCCEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHEECCEEEEHHHHHHCCHHHCCCCCEEE
T ss_conf             75678899999999999999999863178988817999688877786563701113363343045547254507871256


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 aIaPGVmg~TGiET~EIIkgiVek~kPD~VIaIDALAaRs~~Rln~TIQIsDTGI~PGSGVGN~R~~l~~etLGVPVIAI  240 (371)
T d1c8ba_         161 AIVPGVMGMTGIETSDIIFGVVKKVNPDFIIAIDALAARSIERVNATIQISDSGIHPGSGVGNKRKEISYETLGIPVIAI  240 (371)
T ss_dssp             EECSGGGCCCSSCHHHHHHHHHHHHCCSEEEEEEEECCSSGGGSSSEEEEETTCBCSCSSSSCCCCBSSSCCC-------
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECHHHCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHCCCCEEEE
T ss_conf             88587550344249999999987518989999601013752333564786677858887767555637987829988997


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 GVPTVVdAatI~~Dtid~~~~~~~~~~~e~~~~s~~l~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ek~~Li  320 (371)
T d1c8ba_         241 GIPTVVDAVSITSDTIDFILKHFGREMKEQGKPSKSLLPSGMTFGEKKKLTEDDLPNEEQRQTYLGMIGTLPDEEKRRLI  320 (371)
T ss_dssp             --CCCEEEEEEECCEESCCCHHHHTTTTTCC---------------------------------CCCCSSCCCTTHHHHH
T ss_pred             CCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             68806601998789999999987543201346531113332333422222222343112204688776246889999999


Q ss_pred             --------------------------------------------------C
Q ss_conf             --------------------------------------------------9
Q 003496          278 --------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------~  278 (815)
                                                                        .
T Consensus       321 ~EvL~P~~~~l~VTPKeID~~I~~~s~iIs~giN~ALhp~i~~e~~~~y~~  371 (371)
T d1c8ba_         321 HEVLAPLGHNLMVTPKEVDMFIEDMANVVAGGLNAALHHEVDQENFGAYTH  371 (371)
T ss_dssp             HHHTCSSCTTEEEEETTHHHHHHHHHHHHHHHHGGGGSCCCCSCCCCSSCC
T ss_pred             HHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC
T ss_conf             997572479655675738999999999999898898677888778764339

>d1eg1a_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) {Trichoderma reesei, Endoglucanase I [TaxId: 51453]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolase family 7 catalytic core
domain: Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1)
species: Trichoderma reesei, Endoglucanase I [TaxId: 51453]

Probab=100.00  E-value=0  Score=27960.49  Aligned_cols=1  Identities=0%  Similarity=-0.992  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 QQ~Gt~t~E~HP~ltwq~CT~~ggCt~~~g~vV~Danwrw~H~~~~~~c~~gn~~~~~lCpd~~tCa~nC~ldgaDY~~~   80 (371)
T d1eg1a_           1 EQPGTSTPEVHPKLTTYKCTKSGGCVAQDTSVVLDWNYRWMHDANYNSCTVNGGVNTTLCPDEATCGKNCFIEGVDYAAS   80 (371)
T ss_dssp             CEECSSSCCCCCBCCEEEEETTTEEEEECCEEEECGGGSCEECTTCCBSEETTEECTTTCSSSHHHHHHCEECCCCTTTT
T ss_pred             CCCCCCCCCCCCCCEEEECCCCCCCEEECCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf             98887767548851447515899827723569980573202006986543388655234887566776246557763675


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 GVttsG~sltL~~~~~~~~~~~~~vGsRvYLl~~d~~Yqmf~Llg~EftFdVD~S~lpCGlNgALYfveM~adGg~s~~n  160 (371)
T d1eg1a_          81 GVTTSGSSLTMNQYMPSSSGGYSSVSPRLYLLDSDGEYVMLKLNGQELSFDVDLSALPCGENGSLYLSQMDENGGANQYN  160 (371)
T ss_dssp             TEEECSSEEEEESCEECSSSSEECCCCEEEEECTTSSBCCBCCTTSEEEEEECTTSCCTTEEEEEEEECCCTTTTCCSSC
T ss_pred             CEEECCCCEEEEEEEECCCCCCCEECCEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCC
T ss_conf             26951884789999824766532023327997588837888726971688864478875223366665226568966667


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~aGA~YGtGYCDAQCp~~~w~~g~~~~g~~G~CC~EmDIwEANs~A~a~TpH~C~~~~CD~~GC~~NpYR~g~~~fyG~G  240 (371)
T d1eg1a_         161 TAGANYGSGYCDAQCPVQTWRNGTLNTSHQGFCCNEMDILEGNSRANALTPHSCTATACDSAGCGFNPYGSGYKSYYGPG  240 (371)
T ss_dssp             CCGGGGTCCCCCTTCCBCSEETTEECTTCCBCCCCEEEEEEECSSCBCBEEECBCSSCBCSSCCCBCTTTTTCTTTSSTT
T ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             66663675323166873332136677578753035401015454134202434568741888867774555786211489


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~tVDT~k~fTVVTQF~t~~~t~~G~LtEIrR~YVQ~GkvI~n~~~~~~~~~~~~~~~~~ggl~~mg~al~rGmVLv~SlW  320 (371)
T d1eg1a_         241 DTVDTSKTFTIITQFNTDNGSPSGNLVSITRKYQQNGVDIPSAQPGGDTISSCPSASAYGGLATMGKALSSGMVLVFSIW  320 (371)
T ss_dssp             SSSCTTSCEEEEEEEEETTSSTTSCEEEEEEEEEETTEECCCSSTTCEEECCCSGGGGGTTTHHHHHHHHHCBEEEEEEE
T ss_pred             CCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEE
T ss_conf             63026897389988665898664434477579997998902776566644454442336889999888608869999979


Q ss_pred             --------------------------------------------------C
Q ss_conf             --------------------------------------------------9
Q 003496          278 --------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------~  278 (815)
                                                                        .
T Consensus       321 dd~~~~M~WLDs~~~GpC~~~~g~p~~ve~~~p~a~V~~SNIKfG~I~ST~  371 (371)
T d1eg1a_         321 NDNSQYMNWLDSGNAGPCSSTEGNPSNILANNPNTHVVFSNIRWGDIGSTT  371 (371)
T ss_dssp             ECTTTTTHHHHBGGGCSBCTTTTCHHHHHHHCTTCEEEEEEEEEESTTTCC
T ss_pred             ECCCCCCEEECCCCCCCCCCCCCCHHHHHHCCCCCEEEEEECEECCCCCCC
T ss_conf             279998523058988888888898668623289977998727583787889

>d1r85a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Xt6 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Xylanase
species: Bacillus stearothermophilus, Xt6 [TaxId: 1422]

Probab=100.00  E-value=0  Score=27959.09  Aligned_cols=1  Identities=0%  Similarity=-1.489  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~p~l~~~~~~~f~~G~av~~~~l~~~~~~~~~~~~Fn~~t~eN~mKW~~iep~~G~~n~~~aD~~v~~a~~n   80 (371)
T d1r85a_           1 KPHISALNAPQLDQRYKNEFTIGAAVEPYQLQNEKDVQMLKRHFNSIVAENVMKPISIQPEEGKFNFEQADRIVKFAKAN   80 (371)
T ss_dssp             CCCCBGGGSCCHHHHHTTTCEEEEEECGGGGGCHHHHHHHHHHCSEEEESSTTSHHHHCSBTTBCCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHCCCEEEEECCHHHCCCHHHHHHHHHHCCEECCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             99664255664999860578387843755547988999999866900326467634124779925838899999999987


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 gi~vrGH~LvW~~~~P~W~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~I~~v~~rY~g~I~~WDVvNE~~~~~~~~r  160 (371)
T d1r85a_          81 GMDIRFHTLVWHSQVPQWFFLDKEGKPMVNETDPVKREQNKQLLLKRLETHIKTIVERYKDDIKYWDVVNEVVGDDGKLR  160 (371)
T ss_dssp             TCEEEEECSCCSTTCCGGGGBCTTSSBGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEESCBCTTSSBC
T ss_pred             CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCC
T ss_conf             99787767786233354101256666444445422333699999999999999999974897528998731106998733


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~g~dyi~~af~~A~~~~~p~~~L~~Ndy~~~~~~k~~~~~~~v~~l~~~g~pidgIG~Q~H~~~~~~~~~~i~  240 (371)
T d1r85a_         161 NSPWYQIAGIDYIKVAFQAARKYGGDNIKLYMNDYNTEVEPKRTALYNLVKQLKEEGVPIDGIGHQSHIQIGWPSEAEIE  240 (371)
T ss_dssp             CCHHHHHHTTHHHHHHHHHHHHHHCTTSEEEEEESCTTSTTHHHHHHHHHHHHHHTTCCCCEEEECCEECSSSSCHHHHH
T ss_pred             CCCHHHCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHH
T ss_conf             37522115858999999999986687546665145644440258999999999977997441433412367998889999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~l~~~a~~Gl~i~ITElDV~~~~~~~~~~~~~~~~~~e~~~~QA~~y~~~~~~~~~~~p~v~git~WG~~D~~sW~~~~  320 (371)
T d1r85a_         241 KTINMFAALGLDNQITELDVSMYGWPPRAYPTYDAIPKQKFLDQAARYDRLFKLYEKLSDKISNVTFWGIADNHTWLDSR  320 (371)
T ss_dssp             HHHHHHHHTTCEEEEEEEEECSSCSSCCCCSSGGGSCHHHHHHHHHHHHHHHHHHHHTGGGEEEEEESSSSTTSCGGGGG
T ss_pred             HHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
T ss_conf             99999997399237866674167776445766542328999999999999999999638974599986898797446788


Q ss_pred             --------------------------------------------------C
Q ss_conf             --------------------------------------------------9
Q 003496          278 --------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------~  278 (815)
                                                                        .
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pLlfD~~~~pKpAy~ai~d~~  371 (371)
T d1r85a_         321 ADVYYDANGNVVVDPNAPYAKVEKGKGKDAPFVFGPDYKVKPAYWAIIDHK  371 (371)
T ss_dssp             CCEEECTTSCEECCTTSCCSEEETTCSCCCCSSBCTTSBBCHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf             865435545533222222222235677788734689988977999986349

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=0  Score=27955.54  Aligned_cols=1  Identities=100%  Similarity=1.300  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~   80 (371)
T d1k8kc_           1 AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL   80 (371)
T ss_dssp             CEEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             CCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEE
T ss_conf             95789998838999989999999994889899998889978999995588998889999799999999979993999862


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s  160 (371)
T d1k8kc_          81 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS  160 (371)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf             03321100122322110001111111211000002576302544203343311100101112221111111111100013


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~  240 (371)
T d1k8kc_         161 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA  240 (371)
T ss_dssp             TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred             CCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEE
T ss_conf             47679998401576431001221111111101124404766747898751233210000147860588641012100000


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (371)
T d1k8kc_         241 SETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL  320 (371)
T ss_dssp             CSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred             CCCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCEE
T ss_conf             14665203654699979999819926787760898628872020676542124622001685065205871245566141


Q ss_pred             --------------------------------------------------C
Q ss_conf             --------------------------------------------------9
Q 003496          278 --------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------~  278 (815)
                                                                        -
T Consensus       321 ~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~~~~~~~l~~~  371 (371)
T d1k8kc_         321 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDLKIV  371 (371)
T ss_dssp             SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHCTTCCCC
T ss_pred             CCCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCHHHHCCEECC
T ss_conf             255569889999948998656799999189939999698684653587639

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=100.00  E-value=0  Score=27962.93  Aligned_cols=1  Identities=0%  Similarity=-0.892  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 k~~~~~~p~~~~~~~~~v~~~l~~~~~~~G~~v~~fE~~~~~~~g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~   80 (371)
T d2fnua1           1 KEFAYSEPCLDKEDKKAVLEVLNSKQLTQGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTP   80 (371)
T ss_dssp             CCEESCCCCCCHHHHHHHHHHHTSSCCSSSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECS
T ss_pred             CEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCCCCCCCCEEECCC
T ss_conf             92067899899999999999981898668977999999999997829399982689999999999544579977052013


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~t~~a~~~ai~~~G~~pv~vDi~~~~~~~~~~~~~~~~~~t~avi~vh~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga  160 (371)
T d2fnua1          81 ISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDYAGKSVEVESVQKLCKKHSLSFLSDSSHALGS  160 (371)
T ss_dssp             SSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTC
T ss_pred             CCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHCCCC
T ss_conf             44332200022058632123332223221012333046200001123445653334532121102220011314441586


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~G~~g~~~~~Sf~~~K~l~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~  240 (371)
T d2fnua1         161 EYQNKKVGGFALASVFSFHAIKPITTAEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLS  240 (371)
T ss_dssp             EETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHH
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             01030478643222335566534320154578762122200000012101122322222311256510033145555544


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 qL~~l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~L~~~gI~~~~~y~pl~~  320 (371)
T d2fnua1         241 QLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQ  320 (371)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGG
T ss_pred             HHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCC
T ss_conf             43211210334443310001212223333332233333333333322222221067999999999879984144765112


Q ss_pred             --------------------------------------------------C
Q ss_conf             --------------------------------------------------9
Q 003496          278 --------------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------------~  278 (815)
                                                                        -
T Consensus       321 ~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~~  371 (371)
T d2fnua1         321 YQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF  371 (371)
T ss_dssp             SHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             898884266689989999984959896888889999999999999999748

>d2dexx3 d.126.1.5 (X:294-663) Peptidylarginine deiminase Pad4, catalytic C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Peptidylarginine deiminase Pad4, catalytic C-terminal domain
domain: Peptidylarginine deiminase Pad4, catalytic C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=27891.44  Aligned_cols=1  Identities=0%  Similarity=-0.427  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 APwimtpnt~~p~eV~v~~~~~n~~Fi~~v~~l~~~a~~~l~i~~~~~~~~DrW~QDe~E~GY~qaP~~~~pVvldspR~   80 (370)
T d2dexx3           1 APWIMTPNTQPPQEVYACSIFENEDFLKSVTTLAMKAKCKLTICPEEENMDDQWMQDEMEIGYIQAPHKTLPVVFDSPRN   80 (370)
T ss_dssp             CCCBCCCTTSCEEEEEECCCSSCHHHHHHHHHHHHHTTCEEEECCHHHHTTCCCTTTSEEEEEEEETTEEEEEEEECTTC
T ss_pred             CCEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEECCCCCCEEEECCCCCCCEEEECCCC
T ss_conf             98574689998648999861268999999999999729956746524578980300021130342689974558607220


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~gl~~fp~~~llg~dfG~~tr~~~~~~v~~lDSfGNLEvsPPvt~~Gk~YPlGRIliG~s~~~~~~gr~m~~~v~dFL~A  160 (370)
T d2dexx3          81 RGLKEFPIKRVMGPDFGYVTRGPQTGGISGLDSFGNLEVSPPVTVRGKEYPLGRILFGDSCYPSNDSRQMHQALQDFLSA  160 (370)
T ss_dssp             SGGGGHHHHTTSBTTBEEEECSCSSSCCCGGGSGGGEEECCCEEETTEEETTCCEEEEECSSCCTTCCCCCHHHHHHHHH
T ss_pred             CCCHHCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             33011527774178753387348877642023567734479862588426777488547788876545330899999998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 Q~VQ~Pv~L~sdWL~VGHVDEf~~FvPa~~~kgfrlLlAsP~a~~~Ll~~~q~~GhG~a~~f~g~~~~~~~tI~~iL~d~  240 (370)
T d2dexx3         161 QQVQAPVKLYSDWLSVGHVDEFLSFVPAPDRKGFRLLLASPRSCYKLFQEQQNEGHGEALLFEGIKKKKQQKIKNILSNK  240 (370)
T ss_dssp             SGGGCCEEEECTTBSSCCGGGTEEEEECSSGGGEEEEEEEHHHHHHHHHHHHHTTCTTCEETTTCTTSCCEEHHHHHHCH
T ss_pred             HCCCCCCEECCCHHHCCCCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHCCH
T ss_conf             64599802305201057401017876369998538996388999999999987578646504655444221199986387


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~l~~~N~~~q~~Id~nr~iLKrELGLte~DIIdiP~LF~~~~~~~A~a~fP~mVNmlVlg~~L~iPkPfGP~inG~c~le  320 (370)
T d2dexx3         241 TLREHNSFVERCIDWNRELLKRELGLAESDIIDIPQLFKLKEFSKAEAFFPNMVNMLVLGKHLGIPKPFGPVINGRCCLE  320 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCEEECGGGCEEESSCCTTSCEEETTEEEEECCCCCEETTEEHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEHHH
T ss_conf             78999999998631789999987099867731253440545878621237641666874033067899788488630799


Q ss_pred             -------------------------------------------------C
Q ss_conf             -------------------------------------------------9
Q 003496          278 -------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------~  278 (815)
                                                                       +
T Consensus       321 e~v~~lleplGl~c~FiDD~~sYh~~~GeVHcgTNv~R~pf~~kWW~~~p  370 (370)
T d2dexx3         321 EKVCSLLEPLGLQCTFINDFFTYHIRHGEVHAGTNVRRKPFSFKWWNMVP  370 (370)
T ss_dssp             HHHHHHHGGGTCEEEEECCTTTTGGGTCCTTTTEEEEECCCSSCGGGCCC
T ss_pred             HHHHHHHCCCCCEEEEECCCHHHHHCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf             99999745478758995473788861772540464441788866702689

>d2gx8a1 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: NIF3 (NGG1p interacting factor 3)-like
superfamily: NIF3 (NGG1p interacting factor 3)-like
family: NIF3 (NGG1p interacting factor 3)-like
domain: Nif3-related protein BC4286
species: Bacillus cereus [TaxId: 1396]

Probab=100.00  E-value=0  Score=27885.19  Aligned_cols=1  Identities=100%  Similarity=0.769  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~p~~~eii~~le~~~P~~lAe~wDnvGL~vg~~~~~V~~I~valD~t~~vi~eAi~~~adlIItHHPl~f~~~k~l~~~~   80 (370)
T d2gx8a1           1 IPNGHEIISLFESMYPKHLAMEGDKIGLQIGALNKPVRHVLIALDVTEEVVDEAIQLGANVIIAHHPLIFNPLKAIHTDK   80 (370)
T ss_dssp             CCBHHHHHHHHHHHSCGGGSCTTCCCEEEESCSSSBCCEEEEESSCCHHHHHHHHHHTCCEEEESSCSCCSCCSCCCTTS
T ss_pred             CCCHHHHHHHHHHHCCHHHCCCCCCCEEEECCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf             99789999999986999671567987379689977649899997699999999997799999979987768964466788


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~li~~~I~vys~HTnlD~~~~G~nd~La~~Lgl~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~agag~  160 (370)
T d2gx8a1          81 AYGKIIEKCIKNDIAIYAAHTNVDVAKGGVNDLLAEALGLQNTEVLAPTYAEEMKKVVVFVPVTHAEEVRKALGDAGAGH  160 (370)
T ss_dssp             HHHHHHHHHHHTTCEEEECCHHHHHSTTSHHHHHHHHTTCEEEEEEEEEEEEEEEEEEEEECHHHHHHHHHHHHHTTTTC
T ss_pred             CHHHHHHHHHHCCCEEEEECCCHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCHHCCCCC
T ss_conf             05699999997897699932402105775799999984897533335555555542389817256666653000037875


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ig~y~~~~~~~~g~G~~~~~~~~~P~ig~~~~~~~~~e~~~e~~~~~~~~~~v~~al~~ahpy~~~~~~~~~~~~~~~~~  240 (370)
T d2gx8a1         161 IGNYSHCTFSSEGTGTFVPQEGTNPYIGETGQLERVEEVRIETIIPASLQRKVIKAMVTAHPYEEVAYDVYPLDNKGETL  240 (370)
T ss_dssp             BTTEEEEEEEEEEEEEEEEC-----------CCEEEEEEEEEEEEEGGGHHHHHHHHHHHSSSSSCCEEEEEEEEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHEEEECHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCC
T ss_conf             45632131013676541477788875676785664131430220427778889998887288610133421234655555


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 G~Grig~l~~p~~l~~~~~~vk~~l~~~~vr~~g~~~~~I~~VAvc~GSG~s~i~~a~~~gaDv~ITGe~k~h~~~dA~~  320 (370)
T d2gx8a1         241 GLGKIGYLQEEMTLGQFAEHVKQSLDVKGARVVGKLDDKVRKVAVLGGDGNKYINQAKFKGADVYVTGDMYYHVAHDAMM  320 (370)
T ss_dssp             EEEEEEEEEEEEEHHHHHHHHHHHTTCSCCEEESCTTSEEEEEEEEEEECGGGHHHHHHTTCSEEEEECCCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
T ss_conf             76459993786039999999998719982899588887423799973662789999987799899982886799999997


Q ss_pred             -------------------------------------------------C
Q ss_conf             -------------------------------------------------9
Q 003496          278 -------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------~  278 (815)
                                                                       -
T Consensus       321 ~gi~lId~GH~sE~~~~~~l~~~L~~~~~~~~~~i~v~~S~~~~dP~~~i  370 (370)
T d2gx8a1         321 LGLNIVDPGHNVEKVMKQGVQKQLQEKVDAKKLNVHIHASQLHTDPFIFV  370 (370)
T ss_dssp             HTCEEEECCGGGGGHHHHHHHHHHHHHHHHTTCCCEEEECCCCCCCCCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEC
T ss_conf             69979978832628999999999999750048856999954778976449

>d2hgsa4 d.142.1.6 (A:3-201,A:304-474) Eukaryotic glutathione synthetase ATP-binding domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Eukaryotic glutathione synthetase ATP-binding domain
domain: Eukaryotic glutathione synthetase ATP-binding domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=27884.63  Aligned_cols=1  Identities=100%  Similarity=0.969  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~l~d~~~~~~l~~~a~dwa~~hGl~m~~~~~~~~~~~~~~aP~tL~Pspfpr~~F~~a~~vq~~~neL~~~vS~D   80 (370)
T d2hgsa4           1 TNWGSLLQDKQQLEELARQAVDRALAEGVLLRTSQEPTSSEVVSYAPFTLFPSLVPSALLEQAYAVQMDFNLLVDAVSQN   80 (370)
T ss_dssp             CCSGGGGSCHHHHHHHHHHHHHHHHHTTCEEECSSCTTCCSSEEECCEESSCCEECHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCEEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99876588889999999999999997483654688888878345578685577687899999999999999999999737


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~fL~~~l~~~~~~D~Ft~~L~~i~~~v~~~g~~q~l~Lgl~RSDYMl~~~~~~~~~~KQVE~NTIS~sfggls~~v~~l  160 (370)
T d2hgsa4          81 AAFLEQTLSSTIKQDDFTARLFDIHKQVLKEGIAQTVFLGLNRSDYMFQRSADGSPALKQIEINTISASFGGLASRTPAV  160 (370)
T ss_dssp             HHHHHHHHHTHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECSSSCEEEEEEEEECSSCCCHHHHHHSHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHCCCCCCCCCCEEEEEECEEEEECCHHHHHHHHH
T ss_conf             99999999877414799999999999999617866259988200654167777665424786112330002176648999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 Hr~l~~~~~~~~~~~~~p~n~~~~~la~gla~a~~~y~~~KKvQQ~La~pgvLe~Fl~~~~~~~~~lr~tFa~ly~LD~~  240 (370)
T d2hgsa4         161 HRHVLSVLSKTKEAGKILSNNPSKGLALGIAKAWELYGSTKKVQQELSRPGMLEMLLPGQPEAVARLRATFAGLYSLDVG  240 (370)
T ss_dssp             HHHHHHHTTCHHHHTTSCCCCHHHHHHHHHHHHHHHHCCSHHHHHHTTSTTHHHHHSTTCHHHHHHHHHTCCCEEECSSS
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf             99999862555421348899717999999999999974466778987498779987089889999999962314506887


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~g~~a~~~a~~~p~~~VLKPQrEGGGnniyg~dI~~~L~~l~~~~e~~ayILMerI~P~~~~~~~vr~g~~~~~~~~iS  320 (370)
T d2hgsa4         241 EEGDQAIAEALAAPSRFVLKPQREGGGNNLYGEEMVQALKQLKDSEERASYILMEKIEPEPFENCLLRPGSPARVVQCIS  320 (370)
T ss_dssp             HHHHHHHHHHHHSGGGEEEEESCCSSSCCBCHHHHHHHHHHHTTSGGGGGEEEEECCCCCCEEEEEECTTSCCEEEEEEE
T ss_pred             CCCHHHHHHHHHCCHHEEECCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCEEECCCCC
T ss_conf             45269999767390227755632477651015488999997688676667899974378776865898896022056132


Q ss_pred             -------------------------------------------------C
Q ss_conf             -------------------------------------------------9
Q 003496          278 -------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------~  278 (815)
                                                                       -
T Consensus       321 ElGifG~~l~~~~~~~~N~~~G~LlRTK~~~~~EGGVaaG~g~lDSpylv  370 (370)
T d2hgsa4         321 ELGIFGVYVRQEKTLVMNKHVGHLLRTKAIEHADGGVAAGVAVLDNPYPV  370 (370)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEEEEEETTCSSCCTTTTSCEEECCEEC
T ss_pred             CCCCCEEEEECCCEEEEECCCEEEEECCCCCCCCCCEECCEECCCCCCCC
T ss_conf             22243799957987997165107886278988887810254206686649

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=100.00  E-value=0  Score=27883.44  Aligned_cols=1  Identities=0%  Similarity=-1.457  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~g~~   80 (370)
T d2iida1           1 RNPLAECFQENDYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWY   80 (370)
T ss_dssp             CCTTGGGGCCTTHHHHHHHHHHCSCCCSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEE
T ss_pred             CCCHHHHCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCE
T ss_conf             98557615881489999987647999999996999898889999999998789988999589988770678764877702


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~d~G~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (370)
T d2iida1          81 ANLGPMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGK  160 (370)
T ss_dssp             EESSCCCEETTCHHHHHHHHHTTCCEEEECSCCTTSEEEETTEEEEHHHHHHCGGGGCCCCCGGGTTCCHHHHHHHHTHH
T ss_pred             ECCCCEEECCCCHHHHHHHHHHCCCCCEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             32575563276489999999838763101025786279618852220233322455433320355543467777887877


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  240 (370)
T d2iida1         161 VVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKL  240 (370)
T ss_dssp             HHHHHHHSCHHHHHHHHTTSBHHHHHHHTSCCCHHHHHHHHHHTTCGGGTTSBHHHHHHHHHHHTTCCCEEEETTCTTHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf             88988742125666530100179999873255577887752100121001467776421001212566655404569999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~l~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~~  320 (370)
T d2iida1         241 PTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTPY  320 (370)
T ss_dssp             HHHHHHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCTT
T ss_pred             HHHHHHHCCCCCCCCCEEEEEEEECCEEEEEEEECCCCEEEEEEEEEEECCCHHHHHHCCCCCCCCHHHHHHHHHCCCCC
T ss_conf             99999864876336864789888099189999964898179990078853898999607048999899999998337863


Q ss_pred             -------------------------------------------------C
Q ss_conf             -------------------------------------------------9
Q 003496          278 -------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------~  278 (815)
                                                                       .
T Consensus       321 ~~~~~~~~~~~~~g~v~~aGd~~~~~~~~~~~a~~sG~~aA~~i~~a~~~  370 (370)
T d2iida1         321 QFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLASEN  370 (370)
T ss_dssp             HHHHHHHHHHCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             10234504306668779963201378851099999999999999864249

>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=0  Score=27882.70  Aligned_cols=1  Identities=0%  Similarity=-0.461  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~v~ipl~k~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs   80 (370)
T d3psga_           1 LVKVPLVRKKSLRQNLIKDGKLKDFLKTHKHNPASKYFPEAAALIGDEPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSS   80 (370)
T ss_dssp             CEEEEEEECCCHHHHHHHTTCHHHHHHHCCCCGGGGTCTTSCCSSCCCTTGGGTTCCEEEEEEETTTTEEEEEEEETTCC
T ss_pred             CEEEECCCCCCHHHHHHHCCCHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEECCCC
T ss_conf             98981510735889988728289998761146455305555576464033134687799999986898389999967989


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~Wv~~~~C~~~~~~~~~~yd~~~Sst~~~~~~~~~~~Yg~Gs~~G~~~~d~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  160 (370)
T d3psga_          81 NLWVPSVYCSSLACSDHNQFNPDDSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAP  160 (370)
T ss_dssp             CEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEESSSCEEEEEEEEEEEEETTEEEEEEEEEEECSCCCGGGGGCS
T ss_pred             CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEEEEEEEECEEEEEEEEEEEEECCCCEECCCC
T ss_conf             82897865787332566621787564423679718999578359999999778650101211389999603674021456


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~Gi~gl~~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~~l~~~p~~~~~~w~v~~~~  240 (370)
T d3psga_         161 FDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDS  240 (370)
T ss_dssp             CSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSEETTEEEEECE
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCEEECCCCCCHHCCCCEEEEEECCCCEEEEEEEE
T ss_conf             66644545674345688763453554054442226888605888771386378583330341158864135537998724


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 i~v~g~~~~~~~~~~aiiDSGTs~~~lp~~~~~~i~~~l~~~~~~~~~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~yi~  320 (370)
T d3psga_         241 ITMDGETIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYIL  320 (370)
T ss_dssp             EESSSSEEECTTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEECTTCCEECCGGGGGGCCCEEEEETTEEEEECHHHHEE
T ss_pred             EEECCEEEECCCCCCEEEECCCCEEECCHHHHHHHHHHHCCEEECCCCEEEECCCCCCCCEEEEEECCEEEEECHHHEEE
T ss_conf             87299677048970179845886275789999999998587260389677744226778619999899999988599399


Q ss_pred             -------------------------------------------------C
Q ss_conf             -------------------------------------------------9
Q 003496          278 -------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------~  278 (815)
                                                                       .
T Consensus       321 ~~~~~c~~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfAp~a  370 (370)
T d3psga_         321 QDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA  370 (370)
T ss_dssp             ECSSCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             ECCCEEEEEEEECCCCCCCCCCEEECHHHHCCEEEEEECCCCEEEEEECC
T ss_conf             82992899999744589889719998896667999998999999899649

>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Lipopolysaccharide core biosynthesis protein RfaG
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=27881.92  Aligned_cols=1  Identities=0%  Similarity=-1.456  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~i~f~~~~y~p~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (370)
T d2iw1a1           1 IVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPA   80 (370)
T ss_dssp             CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESEECSCCCTTCEEEECCCCCSSHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             98999148899998999999999999977997999956787788886389986765544301158899999999986165


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (370)
T d2iw1a1          81 DRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPER  160 (370)
T ss_dssp             SEEEESSCCTTCSEEECCSCCHHHHHHHHCCHHHHTSHHHHHHHHHHHHHHSTTCCCEEEESCHHHHHHHHHHHCCCGGG
T ss_pred             CEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCCE
T ss_conf             52531036723789987622441046630474200040000067889999742157469982479999999860999642


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 i~vi~~gv~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~gr~~~~Kg~~~li~a~~~l~~~~~~~~~~ii~g~~~~~~  240 (370)
T d2iw1a1         161 FQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRK  240 (370)
T ss_dssp             EEECCCCCCGGGSGGGSCTTHHHHHHHHTTCCTTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSCCHH
T ss_pred             EEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHCCCCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf             89997402222112467656666654304888663699998514554203332011123323322100000112222223


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PvI~s~~~g~~e~i~~~~~G~l~~~~  320 (370)
T d2iw1a1         241 FEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEP  320 (370)
T ss_dssp             HHHHHHHHTCGGGEEEESCCSCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCHHHHHCCCCCEEEECCC
T ss_conf             22222222222222223323344422233334443222234331133214577039993899718885279836998699


Q ss_pred             -------------------------------------------------C
Q ss_conf             -------------------------------------------------9
Q 003496          278 -------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------~  278 (815)
                                                                       .
T Consensus       321 ~d~~~la~~i~~ll~d~~~~~~~~~~ar~~~~~~~~~~~~~~~~~ii~g~  370 (370)
T d2iw1a1         321 FSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITGG  370 (370)
T ss_dssp             CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC
T ss_conf             99999999999997699999999999999999828547999999998485

>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=0  Score=27882.95  Aligned_cols=1  Identities=0%  Similarity=-1.657  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 p~p~~~~~i~vEf~SpN~~kplHvGHlRs~iiGd~laril~~~G~~V~r~nyigD~G~Qi~~l~~~~~~~~~~~~~~~~~   80 (370)
T d1iq0a2           1 PFPRRPGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKY   80 (370)
T ss_dssp             CCCCEEEEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCH
T ss_pred             CCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf             99999986999863899998864311361799999999999769979899847976499999999999856153346544


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~y~~~~~~~~~~~~~~~~~e~~~~le~~~~~~~~~~~l~~~~~~l~~l~v~fD~~~~Es~l~~~~~~~~~i~~l  160 (370)
T d1iq0a2          81 DHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALL  160 (370)
T ss_dssp             HHHHHHHHHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECEEEEECCCCCCCCHHHHHHHH
T ss_conf             56644324666542788888899999999987666999999999888865411331101012202322364146667666


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~ga~~~d~~~~~~~~~~~~~vl~ksDG~~tY~t~DiAy~~~K~~~~~~~~~~~~~~~~~~~i~i~~  240 (370)
T d1iq0a2         161 EQSPHVFRPREGKYAGALVMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSA  240 (370)
T ss_dssp             TTSTTEECCSSSTTTTCEEEECTTTSCSCSCCEEEEECTTSCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTCEEEE
T ss_pred             HHCCCEEECCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCEEECCHHHHHHHHCCCCCCCCEECCCCCCCCEEEEEC
T ss_conf             52361441246665447983374355566674003685267725862079987601033222110024467663267632


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~d~~~~~~~~d~~iyVvd~~Q~~h~~~v~~~~~~~g~~~~~~~~~hv~~g~v~~~g~kMStR~G~~v~l~dll~ea~~~a  320 (370)
T d1iq0a2         241 PEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLEEATRRA  320 (370)
T ss_dssp             EEEEECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEEETTBCSCC----CCBHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHCEEEEEEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHH
T ss_conf             43443202356788887124047999999999981998034111257899983378534356887458999999999999


Q ss_pred             -------------------------------------------------C
Q ss_conf             -------------------------------------------------9
Q 003496          278 -------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------~  278 (815)
                                                                       .
T Consensus       321 ~~~~~~r~~~~~~~~~~a~~vgi~avky~~L~~~~~~~~~Fd~d~~lsfe  370 (370)
T d1iq0a2         321 RAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFE  370 (370)
T ss_dssp             HHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHCSS
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHEEHHHHHCCCCCCCEECHHHHCCCC
T ss_conf             99998508982008999987616632225864589998568789921479

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=100.00  E-value=0  Score=27881.50  Aligned_cols=1  Identities=0%  Similarity=0.869  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (370)
T d3coxa1           1 TLADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFG   80 (370)
T ss_dssp             CCCTTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCSCSCCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBS
T ss_pred             CCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             98888899799978478999999999878793999967899887654533221113455443334544445544543456


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vGG~S~~~~~~~~r~~~~df~~~~~~~~~~~~~~~~y~~~e~~lgv~~~~~~~  160 (370)
T d3coxa1          81 INKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPSVDSNEMYNKYFPRANTGLGVNNIDQAW  160 (370)
T ss_dssp             CCCBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             67656535664445578862156420356555015865524897885223556873788999999999750876444776


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~a~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~s~~~~~L~~a~~~g~~~i  240 (370)
T d3coxa1         161 FESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTI  240 (370)
T ss_dssp             HHHCGGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSTTTTCSTTCCSSSBCCGGGTHHHHHHHTTCEEE
T ss_pred             CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf             66788860889999999974986334664345565655444345531224522364443436837877899985898489


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~t~~~V~~I~~~~~~~~~V~v~~~~~~~~~~~~~~~~A~~VILaAGai~Tp~LLL~S~~~~~l~~~s~~vG~~~g~~~~~  320 (370)
T d3coxa1         241 TTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLVSMKAQGHLPNLSSQVGEGWGVLLNK  320 (370)
T ss_dssp             ECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHHHHHHHTTSSTTSCTTTTCCBSSCTTT
T ss_pred             EECCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEEECCEEEEEECHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCC
T ss_conf             73673899998499718999999588662322899989999995078885999996789897998877667885664575


Q ss_pred             -------------------------------------------------C
Q ss_conf             -------------------------------------------------9
Q 003496          278 -------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------~  278 (815)
                                                                       -
T Consensus       321 ~~~~~g~~~~~~~~~~~d~~~~pg~~~~np~~t~~a~a~~~~~~~~~~~~  370 (370)
T d3coxa1         321 ATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMDKIISSDI  370 (370)
T ss_dssp             TSCTTSBCTTSTTEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             55666544687774576334366766768205379998878998875029

>d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-mannanase
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=100.00  E-value=0  Score=27881.43  Aligned_cols=1  Identities=0%  Similarity=-0.924  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~~v~~~g~~f~~nG~~~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~~k~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~   80 (370)
T d1rh9a1           1 NNFVYTDGTHFALNGKSLYINGFNAYWLMYIAYDPSTRIKVTNTFQQASKYKMNVARTWAFSHGGSRPLQSAPGVYNEQM   80 (370)
T ss_dssp             CCCCEEETTEEEETTEEECEEEEECTTHHHHHHSTTTTHHHHHHHHHHHHTTCCEEEEESSCSSSSSCSEEETTEECHHH
T ss_pred             CCCEEEECCEEEECCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHH
T ss_conf             99679989999999999999999526675011588999999999999998799199979856766765678887546788


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 l~~ld~~l~~a~~~Gi~vi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~  160 (370)
T d1rh9a1          81 FQGLDFVISEAKKYGIHLIMSLVNNWDAFGGKKQYVEWAVQRGQKLTSDDDFFTNPMVKGFYKNNVKVVLTRVNTITKVA  160 (370)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECCBSSSSSSBHHHHHHHHHHTTCCCCCGGGGGTCHHHHHHHHHHHHHHHHCBCTTTCSB
T ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999986999999624443212687555410025777677521124899999999999999998641666765


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~v~~~~l~NEp~~~~~~~~~~~~~~~~~~~~~ir~~dp~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (370)
T d1rh9a1         161 YKDDPTILSWELINEPRCPSDLSGKTFQNWVLEMAGYLKSIDSNHLLEIGLEGFYGNDMRQYNPNSYIFGTNFISNNQVQ  240 (370)
T ss_dssp             GGGCTTEEEEESCBSCCCTTCTTSHHHHHHHHHHHHHHHHHCCSSEEECCCCCCCCGGGGGGSGGGCCCSCCHHHHHTST
T ss_pred             HCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             16870365300036666677543688999999999999965899749984221456544656777444565110235688


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~D~~~~h~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kPv~i~EfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (370)
T d1rh9a1         241 GIDFTTIHMYPNQWLPGLTQEAQDKWASQWIQVHIDDSKMLKKPLLIAEFGKSTKTPGYTVAKRDNYFEKIYGTIFNCAK  320 (370)
T ss_dssp             TCCCEEEECCHHHHSTTSCHHHHHHHHHHHHHHHHHHHHHHTSCEEEEECCCCTTSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             66088753246765567760245667788999999999757975998453676789988889999999999999999998


Q ss_pred             -------------------------------------------------C
Q ss_conf             -------------------------------------------------9
Q 003496          278 -------------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------------~  278 (815)
                                                                       +
T Consensus       321 ~~~~~~G~~~W~~~~~~~~~~~dg~g~~~~d~~~t~~~~~~~~~~~~~~~  370 (370)
T d1rh9a1         321 SGGPCGGGLFWQVLGQGMSSFDDGYQVVLQESPSTSRVILLQSLRLSKLS  370 (370)
T ss_dssp             TTCSEEEEEESCBCCTTCGGGCCSCCBCGGGCHHHHHHHHHHHHHHTTCC
T ss_pred             HCCCEEEEEEEEECCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf             58980899982154788767799845866897228999999999986249

>d1itua_ c.1.9.7 (A:) Renal dipeptidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Renal dipeptidase
domain: Renal dipeptidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=27811.94  Aligned_cols=1  Identities=0%  Similarity=-1.391  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~e~A~~lh~~~pViD~H~D~~~~l~~~~~~~~~~~~~~~~~~~~ghvDlprlr~Ggv~~q~faifv~~~~~~~~~~~   80 (369)
T d1itua_           1 DFFRDEAERIMRDSPVIDGHNDLPWQLLDMFNNRLQDERANLTTLAGTHTNIPKLRAGFVGGQFWSVYTPCDTQNKDAVR   80 (369)
T ss_dssp             CHHHHHHHHHHTTSCEEEEEECHHHHHHHHHTTCTTSGGGCTTTCCSSSCCHHHHHHTTEEEEEEEECCCGGGTTTTHHH
T ss_pred             CHHHHHHHHHHCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCHHHHH
T ss_conf             94789999996489989834328999998733333444344355888865799999669987999998078777759999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~al~~id~~~~~~~~~~d~~~~~~s~~di~~a~~~gkiavil~iEg~~~l~~dl~~L~~~y~lGvR~i~Lt~n~~N~~a~  160 (369)
T d1itua_          81 RTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFREGKVASLIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWAD  160 (369)
T ss_dssp             HHHHHHHHHHHHHHHCTTTEEECCSHHHHHHHHHHTCEEEEEEEECGGGGTTCHHHHHHHHHTTEEEEESCSSSCCSSBC
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf             99999999999999688768973157899998743672788414345311256799999986495598722687887777


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~g~~~~~~~GLt~~G~~~V~emn~lGmiiDlSH~s~~~~~dv~~~s~~PviaSHsn~ral~~h~RNl~De~l~aI  240 (369)
T d1itua_         161 NWLVDTGDSEPQSQGLSPFGQRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVPDDVLRLV  240 (369)
T ss_dssp             BGGGGGTSSCCSSSSBCHHHHHHHHHHHHHTCEEECTTBCHHHHHHHHHHCSSCCEESSCCBTTTSCCTTSBCHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHCCCCHHHHHHH
T ss_conf             75433577876678867678999998641481666487868899988612577456424026654033338998999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 a~~GGviGi~~~~~fl~~~~~~~~~~~~~hi~~~~~l~G~dhVgiGsDfdg~~~~p~gl~~~~~~p~l~~~L~~rG~se~  320 (369)
T d1itua_         241 KQTDSLVMVNFYNNYISCTNKANLSQVADHLDHIKEVAGARAVGFGGDFDGVPRVPEGLEDVSKYPDLIAELLRRNWTEA  320 (369)
T ss_dssp             HHHTCEEEECCCHHHHTSSSCCBHHHHHHHHHHHHHHHCGGGEEECCCTTSCSCCCBTCSSTTCHHHHHHHHHHTTCCHH
T ss_pred             HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHH
T ss_conf             96597488850564212330236899999999999870952179865678999998777787788999999998699999


Q ss_pred             ------------------------------------------------C
Q ss_conf             ------------------------------------------------9
Q 003496          278 ------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------~  278 (815)
                                                                      +
T Consensus       321 ~i~ki~g~N~lRv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (369)
T d1itua_         321 EVKGALADNLLRVFEAVEQASNLTQAPEEEPIPLDQLGGSCRTHYGYSS  369 (369)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHCCSSSCCCCCCCCGGGCCSSSCCCTTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf             9999998869999999999998613876789984572765441578899

>d1rwha1 a.102.3.2 (A:4-372) Chondroitinase AC {Arthrobacter aurescens [TaxId: 43663]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Chondroitin AC/alginate lyase
family: Hyaluronate lyase-like catalytic, N-terminal domain
domain: Chondroitinase AC
species: Arthrobacter aurescens [TaxId: 43663]

Probab=100.00  E-value=0  Score=27810.56  Aligned_cols=1  Identities=0%  Similarity=-1.657  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~d~~~lr~rw~~~l~g~~~~~~~d~~~~~~l~~l~~~a~~~~~~~~~~~~~~~lW~dl~~~~sa~~~~~~~rl~~mA   80 (369)
T d1rwha1           1 PGAAEFAALRNRWVDQITGRNVIQAGDPDFAKAITALNNKAADSLAKLDAAAGRTSVFTDLSLAKDAEMVTTYTRLSQLA   80 (369)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCCTTCHHHHHHHHHHHHHHHHHHHTBCCCTTCSCSBTTCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             96679999999999997488766657878999999999999999997335677666688887886278999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~Ay~~pgs~~y~d~~l~~~I~~al~~l~~~~~~~~~~~~gNWW~~eIg~P~~l~~~liLl~d~l~~~~~~~~~~~i~~f~  160 (369)
T d1rwha1          81 TAWATPTAAVFGDAAVLAAIKAGLADANTLCYNDRKEEVGNWWSWEIGVPRALADAMVLLHAELSAAERTAYCAAIDHFV  160 (369)
T ss_dssp             HHHTSTTSTTTTCHHHHHHHHHHHHHHHHHTSSTTCCCCSCHHHHHTHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHC
T ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf             99819999542699999999999999997188789999999101532858999999998502179899999999999866


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 pdp~~~~~~~~~~~~~tGaNrvd~a~~~i~~glL~~d~~~v~~a~~~i~~v~~~vt~gdGf~~DgSf~qH~~~~Y~G~YG  240 (369)
T d1rwha1         161 PDPWLQFPPKRGKITSVGANRVDLCQGIIIRSLAGEDPTKLNHAVAGLSQVWQYVTSGDGIFRDGSFIQHSTTPYTGSYG  240 (369)
T ss_dssp             SCTTEESCGGGCCEECCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHGGGGGSCBSSSSEEBTTSCEEETTTEECTTTHH
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCEECCCCCH
T ss_conf             78643346667752252009999999999999980899999999998641122245897423477636304442166425


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~l~~~~~~~~~l~gT~~~~~~~~~~~l~~~i~~g~~~~i~~g~m~~~v~GR~ISR~~~~~~~~g~~~~~~~~~la~~~  320 (369)
T d1rwha1         241 VVLLTGLSKLFSLLGGTAFEVSDPTRSIFFDAVEGSFAPVMINGAMADAVRGRSISREANTGYDLGASAIEAILLLARAM  320 (369)
T ss_dssp             HHHHHHHHHHHHHHTTSTTCCCCGGGHHHHHHHHHTTGGGEETTEECGGGSGGGGGCTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             99999999999997799898887899999999995003462577116667887100788776168999999999998519


Q ss_pred             ------------------------------------------------C
Q ss_conf             ------------------------------------------------9
Q 003496          278 ------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------~  278 (815)
                                                                      .
T Consensus       321 ~~~~~~~~~~~vk~~i~~d~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~  369 (369)
T d1rwha1         321 DPATAARWRGLCAGWIARDTYRPILNSASVPRTALVKQLEATGVAPVAE  369 (369)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCSSCTTTTCCHHHHHHHHHHHHHTCCCCCC
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf             9999999999999998718765544676522689999986067783889

>d2heka1 a.211.1.1 (A:1-369) Hypothetical protein aq_1910 {Aquifex aeolicus [TaxId: 63363]}

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Hypothetical protein aq 1910
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=0  Score=27808.70  Aligned_cols=1  Identities=0%  Similarity=-0.860  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~k~~~D~i~g~i~~~~~~~rii~s~~fqRL~~~~Ql~~~~~v~p~a~htR~~HSLgV~~lar~l~~~l~~~~~~~v~~A   80 (369)
T d2heka1           1 MIKEFSDPLYGFVRVGEAGLRLIDSFPFQRLRYVKQLGLAYLVFPSAQHTRFEHSLGVYHITERICESLKVKEKELVKLA   80 (369)
T ss_dssp             CEEEEEETTTEEEEEEHHHHHHHTSHHHHGGGGSBTTTTGGGTSTTCCCBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHH
T ss_pred             CCEEEECCCCCCEECCHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             95377359988886488999982997670345773478552338999566211998999999999999743328899999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~LlHDiGh~PFsH~gE~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~d~  160 (369)
T d2heka1          81 GLLHDLGHPPFSHTTEVLLPRERSHEDFTERVIKETEIYEILKQDYSHEDIERLVRITLGKPEDEEEKLLSEIITGEFGS  160 (369)
T ss_dssp             HHTTTTTCCSSSSCHHHHSTTSSSCCCHHHHHHHHSHHHHHHHTTSCHHHHHHHHHHHHTCCSSHHHHHHHHHHHSTTCH
T ss_pred             HHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCHH
T ss_conf             99860265022204666620345520468998740179999998521236999999863246675204588775265101


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 Drldyl~rd~~~~~~~~g~~~~~~l~~~~~~~~~~l~~~~~~~~~~e~~~~~R~~m~~~vy~h~~~~~~~~~l~~~~~~~  240 (369)
T d2heka1         161 DRMDYLRRDAYFCGVSYGFFDYDRLISTLRVYENKVVVDESGLRALENFLISRYFMYVQVYFHKVVRILSIHLVEFLKKL  240 (369)
T ss_dssp             HHHHHHHHHHHHHTCCSSCCCCHHHHHTEEEETTEEEEEGGGHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             03433344465506767730199998877653400013563499999999999999899955478899999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~d~~~~~~l~D~~i~~~L~~~~~~~~~~~~i~~R~l~K~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  320 (369)
T d2heka1         241 ISQEDFTDINNFLRLNDAFVISELFKRKAFREDFERIFQRKHFKTLLSTENYEKFSETKERLLEKFPQEKVRFDEVEKEV  320 (369)
T ss_dssp             TSSCCCSSTHHHHTCCHHHHHHHHHHCSTTHHHHHHHHSSCCCEEEEEESCHHHHHHHHHHHHHHSCGGGEEEEEEEECS
T ss_pred             HHCCCCCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             86589788999973369999999985802519999998340252020167788899999999987442144401343445


Q ss_pred             ------------------------------------------------C
Q ss_conf             ------------------------------------------------9
Q 003496          278 ------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------~  278 (815)
                                                                      .
T Consensus       321 ~~~~i~i~~~~~l~~l~~~S~lv~~L~~~~~~riy~~~~v~e~~~~~~~  369 (369)
T d2heka1         321 YGGNIYVLSSEGLKKAHELSPLIASLKPIKLYRIYVDRQLWEKARSELK  369 (369)
T ss_dssp             CCSCCEEEETTEEEEHHHHCHHHHHCCCEEEEEEEECTTTHHHHHHTTC
T ss_pred             CCCCEEEECCCCEEEHHHHCHHHHHHHHHHHEEEECCHHHHHHHHHHHC
T ss_conf             6777489639855583563699998688666378889999999998629

>d2ewoa1 d.126.1.6 (A:2-370) Agmatine iminohydrolase {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Porphyromonas-type peptidylarginine deiminase
domain: Agmatine iminohydrolase
species: Streptococcus mutans [TaxId: 1309]

Probab=100.00  E-value=0  Score=27808.58  Aligned_cols=1  Identities=0%  Similarity=0.769  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~tp~~~g~rmPaEwep~~~~~l~wP~~~~~w~~~~~~~~~~~~~i~~~ia~~e~V~~~v~~~~~~~a~~~~~~~   80 (369)
T d2ewoa1           1 AKRIKNTTPKQDGFRMPGEFEKQKQIWMLWPWRNDNWRLGAKPAQKAFLEVAEAISEFEPVSLCVPPLQYENALARVSEL   80 (369)
T ss_dssp             CCEECSSCHHHHTCCCCCTTSCEEEEEECCCCCTTTSSGGGHHHHHHHHHHHHHHHTTSCEEEEECGGGHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHC
T ss_conf             98567899301387878872416069998789986303578999999999999985898699998938999999998536


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~i~~~~~~~dD~W~RD~GP~~v~~~~g~~~~vdf~FN~wG~k~~~~~~~~~~d~~~~~~ia~~~~~~~~~~~~lvlE  160 (369)
T d2ewoa1          81 GSHNIRIIEMTNDDAWIRDCGPTFLVNDKGDLRAVDWEFNAWGGLVDGLYFPWDQDALVARKVCEIEGVDSYKTKDFVLE  160 (369)
T ss_dssp             TCCSEEEEECCCSSCCTTTSSCEEEECSSSCEEEEEEECCTTTTTTTCSSSCCTTHHHHHHHHHHTTTCCEEEEEEEECC
T ss_pred             CCCCEEEEEECCCCHHHHCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEC
T ss_conf             77777999924797566134645898588988998533367765445545522457799999998736543466354875


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 GG~ie~dG~GtlltT~~cll~~nRNp~~s~~~ie~~L~~~LGv~~viwL~~g~~~DdTdGHID~~arFi~~~tvl~~~~~  240 (369)
T d2ewoa1         161 GGSIHVDGEGTVLVTEMCLLHPSRNPHLTKEDIEDKLKDYLNCVKVLWVKDGIDPYETNGHIDDVACFIRPGEVACIYTD  240 (369)
T ss_dssp             GGGEEEETTTEEEEEHHHHTSTTSCTTSCHHHHHHHHHHHHCCSEEEEECCCSCTTTTSSCSTTTEEEEETTEEEEBCCC
T ss_pred             CCCEEECCCCCEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEECC
T ss_conf             89789889985896445621667899989999999999985994799844766666667773206997289849997148


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 d~~~~~y~~~~~~~~~L~~~~d~~G~~~~i~~lp~p~~~~~~~~~~~~~~~~~~~~~~~g~~l~aSY~Nfli~N~~VivP  320 (369)
T d2ewoa1         241 DKEHPFYQEAKAAYDFLSQQTDAKGRPLKVHKMCVTKEPCYLQEAATIDYVEGSIPREEGEMAIASYLNFLIVNGGIILP  320 (369)
T ss_dssp             CTTSTTHHHHHHHHHHHHTCBCSSSCBCEECCBCBCSSCEECCCGGGSCCCCC-------CEECCBTTCCEEETTEEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEE
T ss_conf             87786579999999999987875699753885368975443333455444467664568988654236789999999990


Q ss_pred             ------------------------------------------------C
Q ss_conf             ------------------------------------------------9
Q 003496          278 ------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------~  278 (815)
                                                                      -
T Consensus       321 ~yg~~~D~~Al~~l~~~fP~r~Vv~i~~~~l~~~gG~iHCiT~q~Pa~~  369 (369)
T d2ewoa1         321 QYGDENDQLAKQQVQEMFPDRKVVGVRTEEIAYGGGNIHCITQQQPATL  369 (369)
T ss_dssp             CCSCTTHHHHHHHHHHHSTTSEEEEECTHHHHTTSCCTTTTCEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHCCCCCEECCCCCCCCC
T ss_conf             1798678999999998888997999844698864975247164536899

>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Serine-carboxyl proteinase, SCP
domain: Serine-carboxyl proteinase, SCP
species: Pseudomonas sp., sedolisin [TaxId: 306]

Probab=100.00  E-value=0  Score=27806.75  Aligned_cols=1  Identities=0%  Similarity=0.204  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~g~~P~~l~~~y~~~~~~tG~gvtVaIid~G~~~~~~~Dl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~   80 (369)
T d1ga6a_           1 AGTAKGHNPTEFPTIYDASSAPTAANTTVGIITIGGVSQTLQDLQQFTSANGLASVNTQTIQTGSSNGDYSDDQQGQGEW   80 (369)
T ss_dssp             CCBCCCBCGGGHHHHTTCTTSCCEEEEEEEEEEESBCHHHHHHHHHHHHHTTCCCCCEEEEECSCTTSCCCBCHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCEEE
T ss_conf             98887749899999739998889887489999617865678899999986599989977651799888888887721133


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~ld~~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~~~~~~~~~~~~~~~~a~~~a~~~G  160 (369)
T d1ga6a_          81 DLDSQSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQG  160 (369)
T ss_dssp             HHHHHHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             24500001015686499999957999865699999999999758986244244322457886168999999999999789


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 i~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ggg~s~~~  240 (369)
T d1ga6a_         161 QTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLYTTSAGAYSNETVWNEGLDSNGKLWATGGGYSVYE  240 (369)
T ss_dssp             CEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEEECTTSCEEEEEECEEEECTTSCEEECCCEEEEEE
T ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             78998179876557678898766543434665688402333100135777765442021356787755335789866656


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~P~~~~~~~~~~~~r~~pdv~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~vAGvvALi~~a~~~~~G~~n~~ly~~~~~  320 (369)
T d1ga6a_         241 SKPSWQSVVSGTPGRRLLPDISFDAAQGTGALIYNYGQLQQIGGTSLASPIFVGLWARLQSANSNSLGFPAASFYSAISS  320 (369)
T ss_dssp             ECCGGGGGSTTSCSEEEECSEEEECCGGGCEEEEETTEEEEECSHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCEECCEECCCCCCCCEEEECCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf             67543334422578852201102467875048726854666578753113899999999863567668768899998864


Q ss_pred             ------------------------------------------------C
Q ss_conf             ------------------------------------------------9
Q 003496          278 ------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------~  278 (815)
                                                                      .
T Consensus       321 ~~~~~~di~~g~n~~~~~~~~a~~G~d~~tG~G~~d~~~l~~~~~s~~~  369 (369)
T d1ga6a_         321 TPSLVHDVKSGNNGYGGYGYNAGTGWDYPTGWGSLDIAKLSAYIRSNGF  369 (369)
T ss_dssp             CGGGEECCCSCBSSSTTCSCBCCSSSBTTTBTCEECHHHHHHHHHHHCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHHHCCC
T ss_conf             7665204445888888887678678988956724379999999986699

>d1laxa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: D-maltodextrin-binding protein, MBP
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=27805.04  Aligned_cols=1  Identities=0%  Similarity=-0.925  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 k~~eg~ltvW~~~~~~~~~~~~~~~~fe~~~gv~V~v~~~~~~~~kl~~~~~~g~~pDv~~~~~~~~~~~~~~g~l~~L~   80 (369)
T d1laxa_           1 KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTDPKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEIT   80 (369)
T ss_dssp             CCCTTSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHTTTCSCSEEEEEGGGHHHHHHTTCBCCCC
T ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCC
T ss_conf             98630899996798316999999999865219879999688799999999866999869998908899999879967588


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~dG~~ygiP~~~~~~~~~ynkd~~~~~p~Tw~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (369)
T d1laxa_          81 PDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPL  160 (369)
T ss_dssp             CCHHHHTTBCHHHHHHTEETTEECSEEEEEECCEEEEETTTCSSCCSBGGGHHHHHHHHHTTTCEEECCCCSSGGGTHHH
T ss_pred             HHHHHHHHHHHHHHHHCEECCEEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf             44533455468898653489999897510220135775000112110057899876442037875632577764004899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~  240 (369)
T d1laxa_         161 IAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV  240 (369)
T ss_dssp             HHHTTCEEEEECSSCEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTC
T ss_pred             HHHHCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCEEEEECCHHHHHHHHCCCC
T ss_conf             98717720002355544454455778999999999998752764444552677765515775687416577540011245


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~p~~~~~~~~~~~~~~~~~i~~~s~~~~~A~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (369)
T d1laxa_         241 NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAAT  320 (369)
T ss_dssp             CEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHHHHHHHHHHTTSSHHHHHHHHHHSCCCEESBHHHHHHHTTSHHHHHH
T ss_pred             CCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHH
T ss_conf             61376314555677655556435664057855899999999864899999999973898865133200444439489999


Q ss_pred             ------------------------------------------------C
Q ss_conf             ------------------------------------------------9
Q 003496          278 ------------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------------~  278 (815)
                                                                      .
T Consensus       321 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~s~~eal~~~~~~it  369 (369)
T d1laxa_         321 MENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTRIT  369 (369)
T ss_dssp             HHHHHHSEECCCSTTHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHC
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf             9999608007888568999999999999998399999999999998519

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=0  Score=27731.88  Aligned_cols=1  Identities=0%  Similarity=-1.656  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~k~ltfdDVlLvP~~sti~srdVdls~~~~~~~~l~iPIiss~MDtV~~~~mA~~la~~Gglgvlhr~~~~   80 (368)
T d2cu0a1           1 KFVEKLEKAIKGYTFDDVLLIPQATEVEPKDVDVSTRITPNVKLNIPILSAAMDTVTEWEMAVAMAREGGLGVIHRNMGI   80 (368)
T ss_dssp             CHHHHHHTCCCCCCGGGEEECCCCCSSCSTTCBCCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECSSSCH
T ss_pred             CHHHHHHHHHHCCCCCCEEEECCCCCCCHHHCEEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCH
T ss_conf             96788998876288000898589776766563653796188314889895798776888999999978996575064898


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 e~~~~~v~~v~~~e~~~~~~~d~~~~~~v~~~~~~~~~~r~~~l~~aGvd~ivID~A~Gh~~~~i~~lK~ir~~~~~~vI  160 (368)
T d2cu0a1          81 EEQVEQVKRVKRAEKYKNAVRDENGELLVAAAVSPFDIKRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQKVDADFI  160 (368)
T ss_dssp             HHHHHHHHHHHTCCCCTTCCBCTTSCBCCEEEECTTCHHHHHHHHHTTCSEEEEECSCCCCHHHHHHHHHHHHTCCSEEE
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             99999887433444324101366763799932572778999999983998798437542012456666554121043132


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 aGNVaT~e~~~~l~gaD~VkVGIG~Gs~CTTr~~tGvG~Pq~sAi~e~~~~~~~~~~~iiADGGi~~~Gdi~KAla~GAd  240 (368)
T d2cu0a1         161 VGNIANPKAVDDLTFADAVKVGIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGAD  240 (368)
T ss_dssp             EEEECCHHHHTTCTTSSEEEECSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCS
T ss_pred             ECCCCCHHHHHHHHCCCCEEECCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHEEEEECCC
T ss_conf             21136799997652276214445675555332112423434789999999875249706845887867721135664132


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~VMlG~~lAg~~Espg~~~~~~g~~~k~~~Gm~S~~a~~~~~~~~~~~~~~~~~~~~~~EG~~~~v~~~G~~~~~l~~l~  320 (368)
T d2cu0a1         241 AVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMKGGAERYYQGGYMKTRKFVPEGVEGVVPYRGTVSEVLYQLV  320 (368)
T ss_dssp             EEEESTTTTTBTTCCSCEEEETTEEEEEEECTTSHHHHTC----------CCCCSCSSCCBCEEEEECCBCHHHHHHHHH
T ss_pred             EEECCCHHCCCCCCCCCEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf             35305311142235773671599270135676642211357752223555333444378832885078888899999999


Q ss_pred             -----------------------------------------------C
Q ss_conf             -----------------------------------------------9
Q 003496          278 -----------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------~  278 (815)
                                                                     .
T Consensus       321 gglrs~m~y~G~~~l~e~~~~~~f~~vt~a~~~E~~~h~~~~~~~~~~  368 (368)
T d2cu0a1         321 GGLKAGMGYVGARNIRELKEKGEFVIITHAGIKESHPHDIIITNEAPN  368 (368)
T ss_dssp             HHHHHHHHHTTCSBHHHHHHHCCEEECCHHHHHHHSCCSSCCSCCCCC
T ss_pred             HHHHHHHHHCCCCCHHHHHHCCEEEEECCCCCCCCCCCCEEEECCCCC
T ss_conf             999999876286509998509789999954142467877366356899

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=0  Score=27731.04  Aligned_cols=1  Identities=0%  Similarity=-0.494  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gnIkV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~   80 (368)
T d2ncda_           1 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQS   80 (368)
T ss_dssp             CCSSSGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCGGGTTSCBCEEEEETTTEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHCCCCCCEEEECCCCEEEECC
T ss_conf             91589999999999999999999999999999999874899756997999990789901027898579957998699706


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~v~plv~~vl~G~n~ti~aYGqtGSGKT~Tm~G~~~~~Giipr~~~~Lf  160 (368)
T d2ncda_          81 IDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLF  160 (368)
T ss_dssp             SCHHHHTTTCCCEEECSEEECTTCCHHHHHTTTHHHHHHHHTTCEEEEEEECSTTSSHHHHHTEETTEECHHHHHHHHHH
T ss_pred             CCCCCCCCCCCEEEECCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHH
T ss_conf             88655677686466778587999986214999998898775036513773115787560671366644344667999876


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~~~~~~~~d~~~~~~v~g~~~~~v~~~~~~~~~l~~g~~~r~~~  240 (368)
T d2ncda_         161 DSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATA  240 (368)
T ss_dssp             HHHHHHHTTSCEEEEEEEEEEESSSCEEETTCSSCCCCCEEECTTCTTCEEETTCCCEEECSHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHCCCCCCCEEEEEEEEEECCEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf             45443202455526899999886560201256421354311302666442334430220477788999999987511244


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~t~~n~~ssrSh~i~~i~v~~~~~~~~~~~~s~l~~VDLAGse~~~~~~~~~E~~~IN~SL~aL~~vi~aL~~~~~~iPy  320 (368)
T d2ncda_         241 STAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPY  320 (368)
T ss_dssp             SSSCTTTTTTCEEEEEEEEEEECTTSCCEEEEEEEEEECCCCCCC----------CTTHHHHHHHHHHHHHHTTCSCCCG
T ss_pred             CCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             22146545554327899999976698856765444422010233102321024552026499999999998658998997


Q ss_pred             -----------------------------------------------C
Q ss_conf             -----------------------------------------------9
Q 003496          278 -----------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------~  278 (815)
                                                                     -
T Consensus       321 R~SkLT~lL~dsLggns~t~mI~~isp~~~~~~eTl~TL~fa~rak~~  368 (368)
T d2ncda_         321 RNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSC  368 (368)
T ss_dssp             GGSHHHHHHGGGSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             578889998985599870999999798735499999999999997569

>d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamate-cysteine ligase family 2 (GCS2)
domain: Carboxylate-amine ligase YbdK
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=27730.79  Aligned_cols=1  Identities=0%  Similarity=-0.461  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~f~~~~~~tiGvE~E~~lvd~~~~~~~~~~~~ll~~~~~~~~~~~i~~El~~~qiEl~t~p~~~~~e~~~~l~~~~~~   80 (368)
T d1r8ga_           1 LPDFHVSEPFTLGIELEMQVVNPPGYDLSQDSSMLIDAVKNKITAGEVKHDITESMLELATDVCRDINQAAGQFSAMQKV   80 (368)
T ss_dssp             CCCCCCCCTTCEEEEEEEEEEETTTTEECSCCHHHHTTTSSSCSSSEEEECSSSSEEEEECCSBSSHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999999983489876543679987667757999997222246886310467766998077779999999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~g~~P~~~~~~~~~~~~~ry~~~~~~~~~~~~~~~~~g~hv~~~~~d~~~~~~~~~~~~~~~p~l~  160 (368)
T d1r8ga_          81 VLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENFGYLIQQATVFGQHVHVGCASGDDAIYLLHGLSRFVPHFI  160 (368)
T ss_dssp             HHHHHHHTTCEEECCSBCSSCCC----------------CCGGGGCSCCBCEEEEEEECSSHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99987655875244575212672215577508999998742707888764256031168999999999999999868998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 aL~anSP~~~G~~tg~~s~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vRp~~~~~~iEiR~~D  240 (368)
T d1r8ga_         161 ALSAASPYMQGTDTRFASSRPNIFSAFPDNGPMPWVSNWQQFEALFRCLSYTTMIDSIKDLHWDIRPSPHFGTVEVRVMD  240 (368)
T ss_dssp             HHHCCBCEETTEECSCSBCGGGGGTTSTTCSSCCCCSSHHHHHHHHHHHTTSSSCSSGGGCCCSEEEETTTTEEEEEEEE
T ss_pred             HHHCCCHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf             88528663358677886775267750876565430001120799999998556445677056316876466742124789


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~p~~~~~~~~aa~~~~l~~~l~~~~~~~~~~~~~~~~~~n~~~aar~Gl~~~l~~~~~~~~~~~~~~~~~Ll~~~~~~l  320 (368)
T d1r8ga_         241 TPLTLSHAVNMAGLIQATAHWLLTERPFKHQEKDYLLYKFNRFQACRYGLEGVITDPHTGDRRPLTEDTLRLLEKIAPSA  320 (368)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHCCCCCCGGGGTTHHHHHHHHHHHGGGSEEECTTTCCEEEHHHHHHHHHHHSHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHH
T ss_conf             99988999997568887888998617877640448999999998876144411000689967689999999999999999


Q ss_pred             -----------------------------------------------C
Q ss_conf             -----------------------------------------------9
Q 003496          278 -----------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------~  278 (815)
                                                                     .
T Consensus       321 ~~lg~~~~l~~l~~~v~~g~t~A~~lr~~~~~~gsl~~~v~~~~e~~~  368 (368)
T d1r8ga_         321 HKIGASSAIEALHRQVVSGLNEAQLMRDFVADGGSLIGLVKKHCEIWA  368 (368)
T ss_dssp             HHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHTTCCHHHHHHHHHHHHC
T ss_pred             HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf             978898999999999982999999999999818999999999998739

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=0  Score=27729.52  Aligned_cols=1  Identities=0%  Similarity=-0.958  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~g~a~~~~a~~~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~~~a~spDg~~i~   80 (368)
T d1mdah_           1 EKSKVAGSAAAASAAAASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFA   80 (368)
T ss_dssp             CCCCCCSHHHHHHHTTCCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTCEEEECTTSSCEE
T ss_pred             CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCCEECCCCCEEE
T ss_conf             94121200000123445679866645589876126972045788621799708998377888578777513989998899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~  160 (368)
T d1mdah_          81 LASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQ  160 (368)
T ss_dssp             EEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEE
T ss_pred             EECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCEEE
T ss_conf             97556764010356786999989999383064378542102468864058878998999996899859999899893867


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~  240 (368)
T d1mdah_         161 LTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPA  240 (368)
T ss_dssp             EEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCS
T ss_pred             EEECCCCCEECCCCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCEEEEEECC
T ss_conf             86046752374699823999948998899982689626665303111356664660101558689993489779996069


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a  320 (368)
T d1mdah_         241 AGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAII  320 (368)
T ss_dssp             SCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEE
T ss_pred             CCEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCCEEEEECCCCCEEEEE
T ss_conf             93699760246543045540127883568871799879998358973340588649999899994868955899651799


Q ss_pred             -----------------------------------------------C
Q ss_conf             -----------------------------------------------9
Q 003496          278 -----------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------~  278 (815)
                                                                     .
T Consensus       321 ~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l~~~~~a  368 (368)
T d1mdah_         321 AAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQNEA  368 (368)
T ss_dssp             ECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCCCC
T ss_pred             ECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEECCC
T ss_conf             998999899999489996999989999799998799998789973489

>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamine synthetase catalytic domain
domain: Glutamine synthetase, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=0  Score=27729.49  Aligned_cols=1  Identities=100%  Similarity=0.071  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~dPR~iLkr~~~~l~~~G~~~~~~~g~E~EF~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (368)
T d1f52a2           1 DRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYF   80 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGGGCCCTTCCCCCCCCTTCCSS
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCEEEEECEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf             98879999999999997699870378854288999421035576777565577322456887666887787655577615


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~~~E~~~~gq~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~Gl~atFmpKP~  160 (368)
T d1f52a2          81 PVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPM  160 (368)
T ss_dssp             BCTTSSCCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSCSS
T ss_pred             EEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCC
T ss_conf             53001107889999999888622570564223456784322078786577889999999999999997436334741568


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~GsG~HiH~Sl~~~~~n~~~~~~~~~lS~~~~~fiaGll~~~~~~~al~~PtvNSYkRl~~~~~aP~~~~Wg~~NR~  240 (368)
T d1f52a2         161 FGDNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRS  240 (368)
T ss_dssp             TTSCCCCEEEEEEEEETTEETTBCSSGGGBCHHHHHHHHHHHHTHHHHHHHHSCSGGGGGTSSSCSSCCCEEEEESSCTT
T ss_pred             CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEEECCCCCC
T ss_conf             89877532589874159985656555556489999999999986699899977996077652477768743452367655


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 a~iRi~~~~~~~~~riE~R~~da~aNPYL~lAa~laagl~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~lP~sl~eAl~a  320 (368)
T d1f52a2         241 ASIRIPVVASPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEPMDKNLYDLPPEEAKEIPQVAGSLEEALNA  320 (368)
T ss_dssp             EEEECCCCSCGGGCCEEECCCCTTSCHHHHHHHHHHHHHHHHHTTCCCCSCCCSCCSSSCCSSTTCCCBCCSSHHHHHHH
T ss_pred             CCEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHCHHCCCCCHHHHHHH
T ss_conf             31464025788662478447880177789999999976542421589999777872448976762320151379999999


Q ss_pred             -----------------------------------------------C
Q ss_conf             -----------------------------------------------9
Q 003496          278 -----------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------~  278 (815)
                                                                     -
T Consensus       321 l~~d~~~~~a~~~lGe~~v~~y~~~K~~E~~~~~~~vt~wE~~~Yl~~  368 (368)
T d1f52a2         321 LDLDREFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPVEFELYYSV  368 (368)
T ss_dssp             HHHTCHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHTTC
T ss_pred             HHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
T ss_conf             964978788765156999999999999999999679999999741689

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=0  Score=27727.69  Aligned_cols=1  Identities=100%  Similarity=0.834  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~la~~~~~I~ls~g~p~~~~p~~i~~al~~~l~~~~~Y~~~~G~~elr~aiA~~~~~~~~~   80 (368)
T d1v2da_           1 MRLHPRTEAAKESIFPRMSGLAQRLGAVNLGQGFPSNPPPPFLLEAVRRALGRQDQYAPPAGLPALREALAEEFAVEPES   80 (368)
T ss_dssp             CCCCGGGGGC---CHHHHHHHHHHHTCEECCCCSCSSCCCHHHHHHHHHHTTTSCSCCCTTCCHHHHHHHHHHHTSCGGG
T ss_pred             CCCCHHHHHCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf             97782345467879999999864399889459889998899999999998602568899867899999997525557741


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~  160 (368)
T d1v2da_          81 VVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNT  160 (368)
T ss_dssp             EEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEES
T ss_pred             EEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHCCCCEEEEECC
T ss_conf             26515307888777650444456532358850134567875177320001354345444788999975335765999769


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~  240 (368)
T d1v2da_         161 PMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEF  240 (368)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             98866666999999999999998498265223333220333333222223344503641455323454322211144223


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~p~g~~~~~~~l~~~~~~  320 (368)
T d1v2da_         241 MPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGWDAF  320 (368)
T ss_dssp             HHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEEECTTCCHH
T ss_pred             CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEEECCCCHHH
T ss_conf             32002221012332233333222222333221025788999999865322456876694786688306999968950899


Q ss_pred             -----------------------------------------------C
Q ss_conf             -----------------------------------------------9
Q 003496          278 -----------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------~  278 (815)
                                                                     -
T Consensus       321 ~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~~~e~i~~ai~rL~~~l  368 (368)
T d1v2da_         321 RLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVV  368 (368)
T ss_dssp             HHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHCCEEEEECHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf             999969999996233078999899899996499999999999999869

>d1pyya4 e.3.1.1 (A:264-631) Penicillin-binding protein 2x (pbp-2x), transpeptidase domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: Penicillin-binding protein 2x (pbp-2x), transpeptidase domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=100.00  E-value=0  Score=27727.70  Aligned_cols=1  Identities=0%  Similarity=-0.493  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 Tid~~lQ~~~e~~l~~~~~~~~~~~~~~vv~d~~TG~IlAmas~P~~dpn~~~~~~~~~~~~n~a~~~~~~PGStfKp~~   80 (368)
T d1pyya4           1 TISSPLQSFMETQMDAFQEKVKGKYMTATLVSAKTGEILATTQRPTFDADTKEGITEDFVWRDILYQSNYEPGSAFKVMM   80 (368)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHCCSEEEEEEEETTTTEEEEEEEESCCCTTTCTTCCTTCCCCCHHHHCCBCCGGGGHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf             93979999999999999997089569999999999939999967988854236766103443265517668863054699


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~aaaLe~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vtl~~al~~S~N~~~~~l~~~lg~~~~~~~~~~~G~~~  160 (368)
T d1pyya4          81 LAAAIDNNTFPGGEVFNSSELKIADATIRDWDVNEGLTGGRMMTFSQGFAHSSNVGMTLLEQKMGDATWLDYLNRFKFGV  160 (368)
T ss_dssp             HHHHHHTTCCCTTCEEECCCEEETTEEECCEETTTEECCSCEEEHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHTTTTS
T ss_pred             HHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCC
T ss_conf             99864023332222222101102444432345544334880456999997532454143210358244789998753487


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~e~~g~~p~~~~~~~~~~~~G~~~~~tplq~a~aya~iANgG~~~~P~~i~~i~d~~g~~~~~~~~~~~~~~i  240 (368)
T d1pyya4         161 PTRFGLTDEYAGQLPADNIVNIAQSSFGQGISVTQTQMIRAFTAIANDGVMLEPKFISAIYDPNDQTARKSQKEIVGNPV  240 (368)
T ss_dssp             CCCCSCSSCCCCBCCCSSHHHHHHGGGTCSCBBCHHHHHHHHHHHHTTTCEECCBCEEEEEEGGGTEEEECCCCEEECCS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEECCCCCCCCCCCC
T ss_conf             42245433233467643320000222346655107888867789854876205579888866876410134432344443


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~m~~~v~~~~~~~~~~~gtg~~~~~~~g~~vaGKTGTaq~~~~~~~~~~~~~~~~~~~fvg~~P~~~P~~  320 (368)
T d1pyya4         241 SKDAASLTRTNMVLVGTDPVYGTMYNHSTGKPTVTVPGQNVALKSGTAQIADEKNGGYLVGLTDYIFSAVSMSPAENPDF  320 (368)
T ss_dssp             CHHHHHHHHHHHHHHHHCTTTCTTEETTTTEESSCCTTSCCEEEEEEEECBCSSSSSBCCSTTCEEEEEEEEESSSSCSE
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCE
T ss_conf             27899999999987531145542676046531213799506678822201477788501366565699999957589959


Q ss_pred             -----------------------------------------------C
Q ss_conf             -----------------------------------------------9
Q 003496          278 -----------------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------------~  278 (815)
                                                                     .
T Consensus       321 ai~V~v~~p~~~~g~~gg~vAapi~~~i~~~~~~l~~~~~~~~~~~~~  368 (368)
T d1pyya4         321 ILYVTVQQPEHYSGIQLGEFANPILERASAMKDSLNLQTTAKALEQVS  368 (368)
T ss_dssp             EEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTGGGCTTSCCSTTTTCC
T ss_pred             EEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             999999778867887306899999999999997743589999724489

>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=27656.98  Aligned_cols=1  Identities=0%  Similarity=-0.959  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~l~~~~~~e~ah~~~~~~~~~~~~~~~~~~~~~~L~v~~~Gl~~~nPi~lAsG~~~~~~~i~~~~   80 (367)
T d1d3ga_           1 MATGDERFYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFRNPVGIAAGFDKHGEAVDGLY   80 (367)
T ss_dssp             CCSCCHHHHHHTHHHHHHHHSCHHHHHHHHHHHHHTTCCC---CCCCGGGCEEETTEEESSSEEECTTSSTTSSSHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCEECCCCCEECCCCCCCHHHHHHHH
T ss_conf             97770899999999999865898999999999998337553236898777568899866998676848787899999986


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~G~G~vv~kTit~~~~~gn~~pr~~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~pv~vsi~~~~~~~  160 (367)
T d1d3ga_          81 KMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSV  160 (367)
T ss_dssp             HHTCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEECCCCCBCCHHHHHHHHHTTHHHHHHHHHTTCCEEEEECCCTTCS
T ss_pred             HCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCH
T ss_conf             35874786134246632457760322102111211224767754699998888875411343436863899834654507


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~ad~lelNiScPn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~vKlsP~~~~~~i~~~a  240 (367)
T d1d3ga_         161 DAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIA  240 (367)
T ss_dssp             CHHHHHHHHHHHHGGGCSEEEEESCCTTSTTC----CHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             88888877777765314400245000321122210111101257888887653202245776301247641000134467


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~~~ipIig~GGI~s~~Da~e~i~aG  320 (367)
T d1d3ga_         241 SVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAG  320 (367)
T ss_dssp             HHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHT
T ss_pred             HHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCC
T ss_conf             88876543102113332234454344211244321121110230889999999738995199988979999999999839


Q ss_pred             ----------------------------------------------C
Q ss_conf             ----------------------------------------------9
Q 003496          278 ----------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------~  278 (815)
                                                                    .
T Consensus       321 As~VQi~Ta~~~~Gp~ii~~I~~~L~~~l~~~G~~si~dl~G~a~~~  367 (367)
T d1d3ga_         321 ASLVQLYTALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGADHRR  367 (367)
T ss_dssp             CSEEEESHHHHHHCTHHHHHHHHHHHHHHHHTTCSSHHHHTTGGGGC
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCHHCCC
T ss_conf             97887417788239079999999999999984999899962802269

>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: Citrate synthase
superfamily: Citrate synthase
family: Citrate synthase
domain: Citrate synthase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=0  Score=27656.98  Aligned_cols=1  Identities=0%  Similarity=-0.493  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~GL~gv~~~eT~IS~id~~~G~L~YRG~~i~dLa~~~sFEEva~LL~~G~LPt~~el~~f~~~L~~~~~lp~~v~~~   80 (367)
T d1o7xa_           1 VVSKGLENVIIKVTNLTFIDGEKGILRYRGYNIEDLVNYGSYEETIYLMLYGKLPTKKELNDLKAKLNEEYEVPQEVLDT   80 (367)
T ss_dssp             CBCGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHTCCCCCHHHHHH
T ss_pred             CCCCCCCCCEEEEEECEEEECCCCEEEECCEEHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             97977799837588680386898879998874999861599999999997798969999999999999863581999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 i~~~p~~~hpm~~l~~~vsal~~~d~~~~~~~~~~~~a~~l~A~~p~i~a~~~r~~~g~~~~~p~~~~s~~~~~~~~~~~  160 (367)
T d1o7xa_          81 IYLMPKEADAIGLLEVGTAALASIDKNFKWKENDKEKAISIIAKMATLVANVYRRKEGNKPRIPEPSDSFAKSFLLASFA  160 (367)
T ss_dssp             HHHSCTTSCHHHHHHHHHHHHHHHCCCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCSCHHHHHHHHHHS
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             98601230146788888998765300234321110167789989999999999876489877885034468887654048


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~l~~~lvl~adHg~n~Stfa~r~~aSt~~d~~~~~~aa~~~l~Gplhgga~~~~~~~l~~~~~~~~~~~~~  240 (367)
T d1o7xa_         161 REPTTDEINAMDKALILYTDHEVPASTTAALVAASTLSDMYSSLTAALAALKGPLHGGAAEEAFKQFIEIGDPNRVQNWF  240 (367)
T ss_dssp             SCCCHHHHHHHHHHHHHHSCCSCCHHHHHHHHHHHTTCCHHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHCSGGGHHHHH
T ss_pred             CCCCHHHHHHHHHHHEEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHH
T ss_conf             88506777776567400015788854300001451376422114667776045434673799999999633654237899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~i~GfGH~vy~~~DPR~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~pNvd~~~~~l~~~  320 (367)
T d1o7xa_         241 NDKVVNQKNRLMGFGHRVYKTYDPRAKIFKKLALTLIERNADARRYFEIAQKLEELGIKQFSSKGIYPNTDFYSGIVFYA  320 (367)
T ss_dssp             HHHTTTTCCCCTTBCCSSCSSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTTTCCBCTTTTHHHHHHH
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             99986147754167875343566228999999999865046512699999999999998534589986838999999998


Q ss_pred             ----------------------------------------------C
Q ss_conf             ----------------------------------------------9
Q 003496          278 ----------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------~  278 (815)
                                                                    .
T Consensus       321 lG~p~~~~~~lf~~~R~~G~~AH~~Eq~~~~~~l~RP~~~Y~Gp~~~  367 (367)
T d1o7xa_         321 LGFPVYMFTALFALSRTLGWLAHIIEYVEEQHRLIRPRALYVGPEYQ  367 (367)
T ss_dssp             HTCCGGGHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCEEEECSCSCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCC
T ss_conf             09786778899999999999999999985789841866510098999

>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}

class: Alpha and beta proteins (a/b)
fold: Glycerol-3-phosphate (1)-acyltransferase
superfamily: Glycerol-3-phosphate (1)-acyltransferase
family: Glycerol-3-phosphate (1)-acyltransferase
domain: Glycerol-3-phosphate (1)-acyltransferase
species: Cushaw squash (Cucurbita moschata) [TaxId: 3662]

Probab=100.00  E-value=0  Score=27653.92  Aligned_cols=1  Identities=0%  Similarity=-0.692  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~i~~~~e~~~lp~~~~~~~~~~~~~y~~a~~~s~~~~a~e~~~~~~~~~~~~~~~~~~~p~~   80 (367)
T d1iuqa_           1 ASHSRKFLDVRSEEELLSCIKKETEAGKLPPNVAAGMEELYQNYRNAVIESGNPKADEIVLSNMTVALDRILLDVEDPFV   80 (367)
T ss_dssp             CCCCCGGGGCCSHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             98641322266589999999999855789857999999999999999973489995089999999999888741478743


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 f~~~h~~~~~~~~~~~~~~~~~~~li~~~~s~v~~~~~l~~~~Ekl~~g~nVIlvSNHqS~~D~~il~~ll~~~~~~l~r  160 (367)
T d1iuqa_          81 FSSHHKAIREPFDYYIFGQNYIRPLIDFGNSFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAE  160 (367)
T ss_dssp             CCSEECCCCSSSCHHHHHHHHHGGGBCGGGCEEECHHHHHHHHHHHHTTCEEEEEECCCCTTHHHHHHHHHTTTCHHHHH
T ss_pred             CCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf             67521000578778999999999986478777815789999999860799779987885400389999998512656210


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~i~f~Ak~~l~~~Pl~~~f~~~~g~I~V~rk~~i~~~p~l~~~~~~~~~~al~~~~~lL~~Gg~~v~IfPEGTRsr~~~~  240 (367)
T d1iuqa_         161 NTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPS  240 (367)
T ss_dssp             HCEEEECTHHHHCTTTHHHHHTSEEEECCCGGGTTSSGGGHHHHHHHHHHHHHHHHHHHHHCCCEEEECTTCSCCCBCTT
T ss_pred             CEEEEEEHHHHCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
T ss_conf             33898545562257789999748878995465444563101002233268899999986168759999456764676666


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 dg~l~p~~F~~~~~~~~~~LA~~sgvP~hV~Pvai~~~d~~pP~~~v~~~ige~R~~~~~~V~i~~G~pId~~~~~~~~~  320 (367)
T d1iuqa_         241 TGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPSQVEIEIGEKRVIAFNGAGLSVAPEISFEEIAATHK  320 (367)
T ss_dssp             TCCBCCCCCCHHHHHHHHHHHHTSSSCEEEEEEEEECGGGSCCC----------CCCCCBCCEEEECCCCCHHHHHHTSS
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECHHHHCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCHHHHHHHCC
T ss_conf             66505665575505899999855799956856044133425887543320001036677861488679735666300022


Q ss_pred             ----------------------------------------------C
Q ss_conf             ----------------------------------------------9
Q 003496          278 ----------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------~  278 (815)
                                                                    .
T Consensus       321 ~~~e~~ea~~k~l~d~v~eq~~~Lk~ai~gk~~~~~~~p~~~~~qp~  367 (367)
T d1iuqa_         321 NPEEVREAYSKALFDSVAMQYNVLKTAISGKQGLGASTADVSLSQPW  367 (367)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCGGGGCCSSCCEECCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             63889999999999999999999999985689822258888878999

>d1b65a_ d.154.1.1 (A:) L-aminopeptidase D-Ala-esterase/amidase DmpA {Ochrobactrum anthropi [TaxId: 529]}

class: Alpha and beta proteins (a+b)
fold: DmpA/ArgJ-like
superfamily: DmpA/ArgJ-like
family: DmpA-like
domain: L-aminopeptidase D-Ala-esterase/amidase DmpA
species: Ochrobactrum anthropi [TaxId: 529]

Probab=100.00  E-value=0  Score=27653.21  Aligned_cols=1  Identities=0%  Similarity=-0.891  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 r~r~R~lGi~~~~~pGp~N~ITDV~GV~VGH~T~~~g~~~~~~~~~~~TGvTvIlp~~g~~~~~~v~ag~~~~~g~~~~~   80 (367)
T d1b65a_           1 KPRARDLGLPFTGVTGPYNAITDVDGVGVGFQTIIENEPRPGRKRPARSGVTAILPHMQSETPVPVYAGVHRFNGNGEMT   80 (367)
T ss_dssp             CCCGGGGTCCCCSCBCTTSSGGGSTTCEEEEEEEECSSCCTTCSSCCEEEEEEEETTTTCSSCCCEEEEEEEEEESSCBC
T ss_pred             CCCHHHCCCCCCCCCCCCCCEECCCCCEECCEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf             97567539887888799875014798566223644687654679986711799971899756786055561368876678


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~v~e~g~~~~aIvLTggsa~Glaa~~~v~~~l~~~~~g~~~~~~~~vvPiV~~~~D~~l~d~~~~~~~~~~~~~A~~  160 (367)
T d1b65a_          81 GTHWIEDGGYFLGPVVITNTHGIGMAHHATVRWMVDRYASTYQTDDFLWIMPVVAETYDGALNDINGFPVTEADVRKALD  160 (367)
T ss_dssp             SHHHHHHHCEECSCEEEEEGGGHHHHHHHHHHHHHHHTHHHHSSSSCCCCCCEEEEECCTTTSCGGGCCCCHHHHHHHHH
T ss_pred             CHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf             05653547753677987567248888789999999856888777885210451279980677876678988999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~A~~~~v~~G~VGAGtGa~~~~~KGGiGtASr~~~~~~~~~tVGaLV~~N~g~~~~~~~~g~p~g~~l~~~~~~~~~~~~  240 (367)
T d1b65a_         161 NVASGPVQEGNCGGGTGMITYGFKGGTGTASRVVEFGGRSFTIGALVQANHGQRDWLTIAGVPVGQHMRDGTPQSQLQER  240 (367)
T ss_dssp             TCBSSCCCCBSCGGGTTCEETTEECEEEEEEEEEEETTEEEEEEEEEEECCCCGGGCCBTTBCHHHHCCTTCHHHHC---
T ss_pred             HHHCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCC
T ss_conf             75228877887573211321356787521267887178835999999744788500240775200131445777777889


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 nTtI~VVATDApL~~~ql~RlA~~A~~GlARai~p~ht~dGD~vfA~STg~~~~~~~~~~~~~~~~~l~~~~l~~lf~Aa  320 (367)
T d1b65a_         241 GSIIVVLATDLPLMPHQLKRLARRASIGIGRNGTPGGNNSGDIFIAFSTANQRPMQHRSAPFLDVEMVNDEPLDTVYLAA  320 (367)
T ss_dssp             -CEEEEEEECSCCCHHHHHHHHHTHHHHHHTTTCCCCTTCEEEEEEEECCSCCCCGGGSCSEEEEEEECSGGGHHHHHHH
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHH
T ss_conf             98899999598189999999999865315312677779984779994057867766556554441004720008899999


Q ss_pred             ----------------------------------------------C
Q ss_conf             ----------------------------------------------9
Q 003496          278 ----------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------~  278 (815)
                                                                    .
T Consensus       321 aea~eeAI~nal~~A~t~~G~~~~~~~~~alp~d~~~~~~~~~~~l~  367 (367)
T d1b65a_         321 VDSVEEAVVNAMIAAEDMGGTPFDRLLVQAIDHERLRAVLRQYGRLA  367 (367)
T ss_dssp             HHHHHHHHHHHHHHCCCEECSTTCSCEECCCCHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHHHHHHCCCC
T ss_conf             99999999999974677657589987741799999999999846679

>d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: Cytochrome P450
superfamily: Cytochrome P450
family: Cytochrome P450
domain: Cyp119
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=100.00  E-value=0  Score=27651.94  Aligned_cols=1  Identities=0%  Similarity=-0.295  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~Y~~~~~lR~~~Pv~~~~~~w~vt~~~di~~vl~d~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~~~R   80 (367)
T d1ue8a_           1 MYDWFKQMRKESPVYYDGKVWNLFKYEDCKMVLNDHKRFSSNLTGYNDKLEMLRSGKVFFDIPTRYTMLTSDPPLHDELR   80 (367)
T ss_dssp             CHHHHHHHHHHCSEEECSSCEEECCHHHHHHHHTCTTTEECCCSSTTTTHHHHHTTCCCCCCGGGSSGGGCCTTHHHHHH
T ss_pred             CCHHHHHHHHCCCEEEECCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             90899999856998844998998799999999669853537765567542224466432224555552006867875667


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~f~~~~l~~~~i~~~~~~ll~~l~~~~d~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (367)
T d1ue8a_          81 NLTADAFNPSNLPVDFVREVTVKLLSELDEEFDVIESFAIPLPILVISKMLGINPDVKKVKDWSDLVALRLGRADEIFSI  160 (367)
T ss_dssp             HHHHGGGSGGGSCHHHHHHHHHHHHTTCCSEEEHHHHTTTHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTSSSSSTTTCC
T ss_pred             HCCCCCCCHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             30133478665144999999999986303345316665543444210110464211026778888877620004799999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~ag~ett~~~l~~~~~~l~~~~~~~~~~~~~~  240 (367)
T d1ue8a_         161 GRKYLELISFSKKELDSRKGKEIVDLTGKIANSNLSELEKEGYFILLMIAGNETTTNLIGNAIEDFTLYNSWDYVREKGA  240 (367)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHCCCCCHHHHHHH
T ss_conf             99999999999999986423431012344441347777764133210010111222101023777633000111345556


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~ai~E~lR~~p~~~~~~r~~~~~~~l~g~~ip~G~~V~~~~~~~~rdp~~~~dP~~F~P~R~~~~~l~FG~G~r~C~G~  320 (367)
T d1ue8a_         241 LKAVEEALRFSPPVMRTIRVTKEKVKIRDQVIDEGELVRVWIASANRDEEVFKDPDSFIPDRTPNPHLSFGSGIHLCLGA  320 (367)
T ss_dssp             HHHHHHHHHHSCSBCCEEEEESSCEEETTEEECSSCEEEECHHHHTTCTTTSSSTTSCCTTCCSCCCCTTCCSTTSCTTH
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             77877645205532334432344310221134048754433210035766689722018798999988779987188119


Q ss_pred             ----------------------------------------------C
Q ss_conf             ----------------------------------------------9
Q 003496          278 ----------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------~  278 (815)
                                                                    .
T Consensus       321 ~lA~~e~~~~l~~Ll~rf~~~~~~~~~~~~~~~~~g~~~l~Vr~~r~  367 (367)
T d1ue8a_         321 PLARLEARIALEEFAKKFRVKEIVKKEKIDNEVLNGYRKLVVRVERT  367 (367)
T ss_dssp             HHHHHHHHHHHHHHHHHEEEEEEEEEEECSCSSBCCEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf             99999999999999985896634898534587758975236999979

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=100.00  E-value=0  Score=27652.38  Aligned_cols=1  Identities=0%  Similarity=-0.658  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (367)
T d1n4wa1           1 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRN   80 (367)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCCCCCTTSSSSCCTTSCCGGGSBSCSBCCCCTTCHHHHGGGCCB
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             95709996769899999999977959199991689988766565422222344544333334433543321235677766


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~g~~~~~~~~~~~~~~g~~lGG~S~i~~~~~~r~~~~~f~~~~~~~~~~~~l~pyy~~ae~~l~~~~~~~~~~~~~  160 (367)
T d1n4wa1          81 IDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDT  160 (367)
T ss_dssp             CCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHHHHHC
T ss_pred             CCCCCCCCCCCCCCCCCEEEEEECCCCCCEECCEEECCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             66566740223688652135776378873224360006866742232245738899999999998829877888866667


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~k~s~~~~yl~~a~~~gn~~i~~~t  240 (367)
T d1n4wa1         161 EWYKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLH  240 (367)
T ss_dssp             GGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSGGGTCSTTCCSSSBCCTTTTHHHHHHHTTSEEEEESE
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCC
T ss_conf             78728899999998738642235323224875555655567631246433445654467667623789758980998787


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak~VVLaAGai~Tp~LLl~S~~~g~l~~~s~~lG~~~~~~l~~~~~~  320 (367)
T d1n4wa1         241 QVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRARDTGTLPNLNSEVGAGWGCVLGKATDD  320 (367)
T ss_dssp             EEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHHHHHHHTTSSTTCCTTTTCCBSSCTTTTBCT
T ss_pred             EEEEEEECCCCCEEEEEEEECCCCCCEEEEEEECCEEEEECCHHCCHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCC
T ss_conf             89998985899889999997777752049998648999906523079999847777999986676667865545644456


Q ss_pred             ----------------------------------------------C
Q ss_conf             ----------------------------------------------9
Q 003496          278 ----------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------~  278 (815)
                                                                    +
T Consensus       321 ~g~~~~~~~~~~~~g~~i~~~~~~~p~~t~~ala~~~~~~~~~~~~~  367 (367)
T d1n4wa1         321 YGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQDVT  367 (367)
T ss_dssp             TSBBTTCSSEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             66435877730347743568687893340799998799999885459

>d1ursa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: D-maltodextrin-binding protein, MBP
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=100.00  E-value=0  Score=27650.15  Aligned_cols=1  Identities=0%  Similarity=-1.887  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 qTIt~w~~~~~~~~~~~~~~~~~F~~~~p~~~v~~~~~~~~~~~~~l~~~~~ag~~pDi~~~~~~~~~~~~~~~g~l~~L   80 (367)
T d1ursa_           1 QTITVWSWQTGPELQDVKQIAAQWAKAHGDKVIVVDQSSNPKGFQFYATAARTGKGPDVVFGMPHDNNGVFAEEGLMAPV   80 (367)
T ss_dssp             CEEEEEESCCHHHHHHHHHHHHHHHHHHCCEEEEEECTTCTTCTTHHHHHHHTTCCCSEEEEEEGGGHHHHHHTTCBCCC
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCC
T ss_conf             97999827884579999999999999879989999848828999999999966999839998582789999987995400


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~dG~~y~iP~~~~~~~l~yNk~~~~~~p~T~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (367)
T d1ursa_          81 PSGVLNTGLYAPNTIDAIKVNGTMYSVPVSVQVAAIYYNKKLVPQPPQTWAEFVKDANAHGFMYDQANLYFDYAIIGGYG  160 (367)
T ss_dssp             CTTSCCGGGSCHHHHHTTEETTEECSEEEEEEECEEEEETTTCSSCCCSHHHHHHHHHHHCEECCTTCHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCCHHHHHHCEECCEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf             24554411479778854638877876420354158887401023431008999999866303667777521068887541


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~g~~~~~~~~~~~~~~~~  240 (367)
T d1ursa_         161 GYVFKDNNGTLDPNNIGLDTPGAVQAYTLMRDMVSKYHWMTPSTNGSIAKAEFLAGKIGMYVSGPWDTADIEKAKIDFGV  240 (367)
T ss_dssp             CEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTSCSCCTTCCHHHHHHHHHTTCCSEEEECGGGHHHHHHTTCCEEE
T ss_pred             HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             02211588644543135588889999999999986136564222037788888527741103366665444441156326


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~P~~~~g~~~~~~~~~~~~~i~~~s~~~e~A~~fl~~l~s~e~q~~~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~~~  320 (367)
T d1ursa_         241 TPWPTLPNGKHATPFLGVITAFVNKESKTQAADWSLVQALTSAQAQQMYFRDSQQIPALLSVQRSSAVQSSPTFKAFVEQ  320 (367)
T ss_dssp             ECCCCCTTSCCCCCEEEEEEEEEBTTCSCHHHHHHHHHHHTSHHHHHHHHHHHCCEESSHHHHTSHHHHTCHHHHHHHHH
T ss_pred             EECCCCCCCCCCCEECCCCCCEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHCHHHHHCHHHHHHHHH
T ss_conf             63365788664310005654010210131688999999850699999999971988873767739553209389999999


Q ss_pred             ----------------------------------------------C
Q ss_conf             ----------------------------------------------9
Q 003496          278 ----------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------~  278 (815)
                                                                    .
T Consensus       321 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~~t~~~al~~~~~~i~kg  367 (367)
T d1ursa_         321 LRYAVPMPNIPQMQAVWQAMSILQNIIAGKVSPEQGAKDFVQNIQKG  367 (367)
T ss_dssp             GGGCEECCCSTHHHHHHHHTTHHHHHHHTSSCHHHHHHHHHHHHHC-
T ss_pred             HHHCEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf             95083178785489999999999999829899999999999998576

>d1qw9a2 c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, catalytic domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Alpha-L-arabinofuranosidase, catalytic domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=0  Score=27653.59  Aligned_cols=1  Identities=0%  Similarity=-1.656  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~i~~~i~g~f~E~lg~~i~~g~~~~~~~~~~~~G~R~dv~~~l~~l~~~~lR~PGG~~~~~y~W~~~iGp~~~Rp~~~~~   80 (367)
T d1qw9a2           1 EIDKRIYGSFIEHLGRAVYGGIYEPGHPQADENGFRQDVIELVKELQVPIIRYPGGNFVSGYNWEDGVGPKEQRPRRLDL   80 (367)
T ss_dssp             ECCGGGGEEECCSSTTSTBTTTBCTTCTTBCTTSBBHHHHHHHHHHTCCEEEESCSGGGGGCCGGGGSSCGGGCCCEEET
T ss_pred             CCCHHHCCCHHHHCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHCCCCCCC
T ss_conf             98824424406543573207664799998887665999999999639987865886136705212365986778886588


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~w~~~~~~~~G~~Ef~~~~~~~gaep~~~vn~g~~~~~~a~d~vey~n~~~~t~~~~~R~~~G~~~P~~v~yweIGNE~~  160 (367)
T d1qw9a2          81 AWKSVETNEIGLNEFMDWAKMVGAEVNMAVNLGTRGIDAARNLVEYCNHPSGSYYSDLRIAHGYKEPHKIKTWCLGNAMD  160 (367)
T ss_dssp             TTTEEECCSSCHHHHHHHHHHHTCEEEEEECCSSCCHHHHHHHHHHHHCCSSSHHHHHHHHTTCCSCCCCCEEEESSCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCC
T ss_conf             88876767777899999999809838999837974099999999997068988889999871887888732899635111


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 g~~~~g~~~~~~Y~~~~~~f~~amk~~dP~i~lia~g~~~~~~~~~~~w~~~vl~~~~~~iD~is~H~Y~~~~~~~~~~~  240 (367)
T d1qw9a2         161 GPWQIGHKTAVEYGRIACEAAKVMKWVDPTIELVVCGSSNRNMPTFAEWEATVLDHTYDHVDYISLHQYYGNRDNDTANY  240 (367)
T ss_dssp             STTSTTCCCHHHHHHHHHHHHHHHHHHCTTCEEEECCCSCTTSTTTTHHHHHHHHHHGGGCSEEEEEEEECCTTCCHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             56555788999999999999998760299836999868877776555289999861311577022347778875512455


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~iavdEwn~wy~~~~~~~~~~~~~~~~~~l~~~~tl~~AL~~A~~L~~~  320 (367)
T d1qw9a2         241 LALSLEMDDFIRSVVAIADYVKAKKRSKKTIHLSFDEWNVWYHSNEADKLIEPWTVAPPLLEDIYNFEDALLVGCMLITL  320 (367)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHTCSCCCEEEEEEEEECCTTHHHHTTCCTTBSSCCTTCCCCBHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             55677799999999999999874046778851886224564454555555554233755312237699999999999999


Q ss_pred             ----------------------------------------------C
Q ss_conf             ----------------------------------------------9
Q 003496          278 ----------------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------------~  278 (815)
                                                                    +
T Consensus       321 ~R~sD~V~mA~~A~lvNvl~~i~~~~~~~~~~~~~y~v~~~~s~~~r  367 (367)
T d1qw9a2         321 MKHADRVKIACLAQLVNVIAPIMTEKNGPAWKQTIYYPFMHASVYGR  367 (367)
T ss_dssp             HHTTTTEEEEEEECSBSSSCSEEECTTSCEEECTTHHHHHHHHHHCC
T ss_pred             HHCCCEEEEEEHHHHHHHHCCEEECCCCCEEECCCHHHHHHHHHHCC
T ss_conf             97259556540337664102148659998610751199999998529

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=27582.38  Aligned_cols=1  Identities=0%  Similarity=-1.723  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   80 (366)
T d1hz4a_           1 EIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM   80 (366)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             94430566213999999999999888999999999999854868996799999999999999879999999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~  160 (366)
T d1hz4a_          81 ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI  160 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             87501148999999888788788888999998899999986750341256788899888789998145666689999988


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  240 (366)
T d1hz4a_         161 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA  240 (366)
T ss_dssp             HHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             87663002468999988888887646678888999999999987311572699999999999986044898999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l  320 (366)
T d1hz4a_         241 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  320 (366)
T ss_dssp             CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             76224666777889999999987587999999999999887642667479999999999999878999999999999997


Q ss_pred             ---------------------------------------------C
Q ss_conf             ---------------------------------------------9
Q 003496          278 ---------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------~  278 (815)
                                                                   .
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~~a~~ll~~in  366 (366)
T d1hz4a_         321 ANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREIN  366 (366)
T ss_dssp             HHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHC
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf             6531829999999999999999998659986999999999987559

>d1moqa_ c.80.1.1 (A:) "Isomerase domain" of glucosamine 6-phosphate synthase (GLMS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: double-SIS domain
domain: "Isomerase domain" of glucosamine 6-phosphate synthase (GLMS)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=27578.97  Aligned_cols=1  Identities=0%  Similarity=-1.290  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~m~kEI~eQP~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~vG~GsS~~aa~~~~~~~~~~~~~~v   80 (366)
T d1moqa_           1 GDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPC   80 (366)
T ss_dssp             CCCTTCSSHHHHHHHTHHHHHHHHHTTSEETTEECCGGGCSSHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCE
T ss_conf             99999861788999889999999999876368620543103068887308889999822899999999999998439204


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~sef~~~~~~~~~~~lvI~iSqSG~s~~ti~a~~~a~~~g~~~ti~iT~~~~S~la~~ad~~i~~~~g~E~~~~~T  160 (366)
T d1moqa_          81 DVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVAST  160 (366)
T ss_dssp             EEEEHHHHHTSCCCCCTTEEEEEEESSSCCHHHHHHHHHHTTTTCSEEEEEESSTTCHHHHHSSEEEECCCCCCCSSSCS
T ss_pred             EEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCEEECCCCCCCCHHH
T ss_conf             99965445244345699987998620589635899999999749973899989999978986074632356654220000


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 k~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~G~~~g~A~E~  240 (366)
T d1moqa_         161 KAFTTQLTVLLMLVAKLSRLKGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPIALEG  240 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTCSEEEEEECGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH
T ss_conf             57899999999999986442032026778779999998876889987777899899997367526996577758999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 aLKl~E~~~~~a~~~~~~Ef~HGP~~~i~~~~~vi~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i  320 (366)
T d1moqa_         241 ALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVSSDNMHII  320 (366)
T ss_dssp             HHHHHHHHCCEEEEEEGGGGGGTGGGGCSTTSCEEEESCCHHHHHHHHHHHHHTGGGTCCEEEEEEGGGCCCCBTTEEEE
T ss_pred             HHHHHHHHHHEEEEECHHHHHCCCHHEECCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEE
T ss_conf             99999887674785037776277430230796089846898177999999999997498299996687322445775699


Q ss_pred             ---------------------------------------------C
Q ss_conf             ---------------------------------------------9
Q 003496          278 ---------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------~  278 (815)
                                                                   .
T Consensus       321 ~~p~~~~~l~pl~~~ip~Qlla~~~A~~~G~~PD~Pr~L~K~vtve  366 (366)
T d1moqa_         321 EMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRNLAKSVTVE  366 (366)
T ss_dssp             EECCCCGGGHHHHHHHHHHHHHHHHHHHHTCCSSSCTTCCSCCCCC
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEC
T ss_conf             6699756787999999999999999998198999999998785319

>d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: Cytochrome P450
superfamily: Cytochrome P450
family: Cytochrome P450
domain: Cyp119
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=0  Score=27576.36  Aligned_cols=1  Identities=0%  Similarity=-0.627  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~y~~~~~lR~~~Pv~~~~~~w~vt~~~~v~~vl~d~~~f~s~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~~~R   80 (366)
T d1io7a_           1 MYDWFSEMRKKDPVYYDGNIWQVFSYRYTKEVLNNFSKFSSDLTGYHERLEDLRNGKIRFDIPTRYTMLTSDPPLHDELR   80 (366)
T ss_dssp             CHHHHHHHHHHCSEEECSSCEEECSHHHHHHHHHCTTTEECCCSSHHHHHHHHTTTCCCCSCGGGSSGGGCCTTHHHHHH
T ss_pred             CCHHHHHHHHCCCEEEECCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHH
T ss_conf             90899999835998873998999689999999659400336764555554433355432235555550117857888987


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~f~~~~l~~~~~~i~~~a~~ll~~~~~~~~D~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  160 (366)
T d1io7a_          81 SMSADIFSPQKLQTLETFIRETTRSLLDSIDPREDDIVKKLAVPLPIIVISKILGLPIEDKEKFKEWSDLVAFRLGKPGE  160 (366)
T ss_dssp             GGGTTTTCHHHHHHHHHHHHHHHHHHHHTCCTTSEEHHHHTTTHHHHHHHHHHHTCCGGGHHHHHHHGGGCTTSCCCTTC
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf             76145565130677888899999999873135563210000000122011001687345799999999999764030146


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~l~aG~~tt~~~l~~~l~~l~~~~~~~~~~~~~l~  240 (366)
T d1io7a_         161 IFELGKKYLELIGYVKDHLNSGTEVVSRVVNSNLSDIEKLGYIILLLIAGNETTTNLISNSVIDFTRFNLWQRIREENLY  240 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSCHHHHHHHTSSCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTCHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf             78888889887665420222045665542014589999999999999714420377999999874313322233442001


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~ee~~r~~~~~~~~~R~~~~d~~i~g~~ip~G~~V~~~~~~~~rdp~~~~dP~~F~PeR~~~~~l~FG~G~r~C~G~  320 (366)
T d1io7a_         241 LKAIEEALRYSPPVMRTVRKTKERVKLGDQTIEEGEYVRVWIASANRDEEVFHDGEKFIPDRNPNPHLSFGSGIHLCLGA  320 (366)
T ss_dssp             HHHHHHHHHHSCSBCCEEEEESSCEEETTEEECTTCEEEECHHHHTTCTTTSTTTTSCCTTCCSCCCCTTCCGGGSCTTH
T ss_pred             HHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             00046553000234300010210024333436789777332010025611258665418898999988788986488369


Q ss_pred             ---------------------------------------------C
Q ss_conf             ---------------------------------------------9
Q 003496          278 ---------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------~  278 (815)
                                                                   +
T Consensus       321 ~lA~~e~~~~l~~ll~rf~~~~~~~~~~~~~~~~~~~~~lpVrl~~  366 (366)
T d1io7a_         321 PLARLEARIAIEEFSKRFRHIEILDTEKVPNEVLNGYKRLVVRLKS  366 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEEEEEEEECCCSSBCCEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEEEEEEC
T ss_conf             9999999999999999779882089865787764787554799969

>d1h6za1 c.1.12.2 (A:538-903) Pyruvate phosphate dikinase, C-terminal domain {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate phosphate dikinase, C-terminal domain
domain: Pyruvate phosphate dikinase, C-terminal domain
species: Trypanosoma brucei [TaxId: 5691]

Probab=100.00  E-value=0  Score=27576.21  Aligned_cols=1  Identities=0%  Similarity=-1.291  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~w~d~~r~i~v~aNi~~~~d~~~a~~~GAdGIGL~RtEflfl~~~~~p~~~e~i~~~~~~~~~~~l~   80 (366)
T d1h6za1           1 RSPDLKGSFQTILQWCQEMKRLGVRTNADTPADAAKARSFGAEGVGLCRTEHMFFEGSRINFIREMILADSASGRKAALD   80 (366)
T ss_dssp             CCSCSTTHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHTTTCCSEEECBCSGGGSTTTHHHHHHHHHSCSSHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHCCCCEECHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHH
T ss_conf             98987458999999875378669997089999999999759984503887998618987882898763235577999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 k~~~~~~~~y~~i~~a~~~~pV~iRtlD~g~dk~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~E~NP~LG~RGiR~~L~  160 (366)
T d1h6za1          81 KLLPIQRADFVGILRAMRGLPVTIRLLDPPLHEFVPHDAAAQFELAQKLGMPAEKVRNRVNALHELNPMLGHRGCRLGIT  160 (366)
T ss_dssp             HHHHHHHHHHHHHHTTTSSSCEEEECCCSCGGGGCCSSCSSTTTTSCSSSCCHHHHHHHHHSSCCSSSTTSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHCC
T ss_conf             87788999999999970899879996224322357850555543111003543555532025557884123456655414


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~p~lf~~QlrAilrA~~~~~~~g~~~~l~iMiP~v~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~iG~MiEvPsaal~~  240 (366)
T d1h6za1         161 YPEIYNMQVRAIIEAAIAVSEEGSSVIPEIMVPLVGKKEELSLIREEVVKTAEAVITKSGKRVHYTVGTMIEVPRAAVTA  240 (366)
T ss_dssp             STTHHHHHHHHHHHHHHHHHTTTCCCCEEEEECCCCSHHHHHHHHHHHHHHHHHHHHHSCSCCCCEEEEEECSHHHHHTH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHH
T ss_conf             80667999999999999987528865401221206679999989999989999887504876441367641213899869


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 d~~a~~vDF~SIGTNDLtQy~la~dR~n~~v~~~~~~~~~~~~~~p~~~~~~~av~~lI~~a~~~~r~~~~~i~vsiCGE  320 (366)
T d1h6za1         241 DSIAQKADFFSFGTNDLTQMGCGFSRDDAGPFLRHYGNLGIYAQDPFQSIDQEGIGELVRIAVTKGRRVKPMLKMGICGE  320 (366)
T ss_dssp             HHHTTTCSEEEECTTHHHHHHHTCCGGGCHHHHTTTTTTCSSSSCTTTSCCTTTHHHHHHHHHHHHHHHSTTCEEEECSG
T ss_pred             HHHHHHCCEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             99863050899601046567765301551134567765200010556606699999999999998775189981997064


Q ss_pred             ---------------------------------------------C
Q ss_conf             ---------------------------------------------9
Q 003496          278 ---------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------~  278 (815)
                                                                   .
T Consensus       321 ~a~dp~~~~~Li~lGi~~lSvsp~~ip~vk~a~a~~~~~~~r~~~~  366 (366)
T d1h6za1         321 HGGDPATIGFCHKVGLDYVSCSPFRVPVAIVAAAHASIKDRRAAMK  366 (366)
T ss_dssp             GGGCHHHHHHHHHHTCSEEEECGGGHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             0239999999998699979989277699999999854998787459

>d2bvya2 c.1.8.3 (A:5-370) Mannanase A, ManA {Cellulomonas fimi [TaxId: 1708]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Mannanase A, ManA
species: Cellulomonas fimi [TaxId: 1708]

Probab=100.00  E-value=0  Score=27575.90  Aligned_cols=1  Identities=0%  Similarity=-0.759  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 t~~lvd~~At~~t~~L~~~L~~~~g~~il~Gqq~~~~~g~~~~~~~~~~~~v~~~tG~yPAv~G~D~~~~~~~~~~~~~~   80 (366)
T d2bvya2           1 TIAIVDADATAETRSLLSYLDGVRGEGILFGHQHTTSFGLTTGPTDGTTSDVKNVTGDFPAVFGWDTLIIEGNERPGLAE   80 (366)
T ss_dssp             CBCCSSTTCCHHHHHHHHHHHHHTTTCEEEEEETTTTSCSSSCSCCSSCCHHHHHHSSCBSEEEEETTTTTTSSTTCCSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCC
T ss_conf             96665888799999999999985489879986146444666687426799999976888776443114567874433223


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~Ggivt~~wH~~nP~~g~~~~~~~~~~~~~vlpg~~~~~~~~~~l~~ia~~a~~Lk~~~~~  160 (366)
T d2bvya2          81 NTRDENIALFADYIRKADAIGGVNTVSAHVENFVTGGSFYDTSGDTLRAVLPGGSHHAELVAYLDDIAELADASRRDDGT  160 (366)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTCEEEEECCCCCTTTSCCTTCCTTCHHHHHSTTSTTHHHHHHHHHHHHHHHHHCBCTTSC
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             67311489999999976306997899971377888986557741689873689970689999999999999998750478


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~VPVl~Rp~HE~nG~WfwWg~~~~~p~~y~~lwr~~~d~l~~~~g~~Nliwvwsp~~~~~~~~~~~~~~YPGDdyVDivG  240 (366)
T d2bvya2         161 LIPIVFRPWHENAGSWFWWGAAYGSPGEYQELYRFTVEYLRDVKGVSNFLYAWGPGGGFGGNRDVYLRTYPGDAFVDVLG  240 (366)
T ss_dssp             BCCEEEECSTTTTSSSSTTSTTSSCHHHHHHHHHHHHHHHHHTSCCCSEEEEECCCSCCTTCHHHHGGGCCCTTTCSEEC
T ss_pred             CCCEEEEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHCCCCCEEEEEE
T ss_conf             86089831220379855057889998999999999999999725876169986168778865211665288987478988


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~D~Y~~~~~~~~~~~~~~~l~~~~~~a~~~~Kp~altE~G~~~~~~~~~~~~~~W~~~~l~~i~~~~~~~~~~y~~~W~n  320 (366)
T d2bvya2         241 LDTYDSTGSDAFLAGLVADLRMIAEIADEKGKVSAFTEFGVSGGVGTNGSSPAQWFTKVLAAIKADPVASRNAYMETWAN  320 (366)
T ss_dssp             CEEEESSCCHHHHHHHHHHHHHHHHHHHHHTCEECBCEEEETTCSSTTSCCCTTHHHHHHHHHHHSTTTTCCSEEEECCC
T ss_pred             EECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf             74457888752278999999999999873699579942002578644678742589999999873721001048988548


Q ss_pred             ---------------------------------------------C
Q ss_conf             ---------------------------------------------9
Q 003496          278 ---------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------~  278 (815)
                                                                   +
T Consensus       321 ~~~~~~~~p~~g~~s~~dF~~~~~dp~~~f~~~l~~~y~~~~~~~~  366 (366)
T d2bvya2         321 FDAGQHFVPVPGDALLEDFQAYAADPFTLFASEVTGAFDRTVAAAP  366 (366)
T ss_dssp             CSSSSCSSCCTTCTTHHHHHHHHHSTTEEBGGGCCSTTCCCCCBCC
T ss_pred             CCCCCCCEECCCCCCHHHHHHHHCCCHHHHHHHCCHHHCCCCCCCC
T ss_conf             9988761236997469999999759566542227032147666797

>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Iron-containing alcohol dehydrogenase
domain: Glycerol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=0  Score=27574.54  Aligned_cols=1  Identities=0%  Similarity=-0.394  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~f~~P~~~~~G~gal~~l~~~l~~~g~r~lvvtd~~~~~~~~~~l~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~   80 (366)
T d1jq5a_           1 AAERVFISPAKYVQGKNVITKIANYLEGIGNKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANI   80 (366)
T ss_dssp             CCCBCCCCCSEEEEETTGGGGHHHHHTTTCSEEEEEECHHHHHHTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHH
T ss_pred             CCCCEEECCCEEEEECCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf             99858958963999039999999999974994899989857899999999999877996999981899999999999998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~D~IiavGGGs~iD~aK~iA~~~~~p~i~IPTT~gtgse~t~~avi~~~~~~~~~~~~~~~~P~~vi~Dp~l~~t  160 (366)
T d1jq5a_          81 ARKAEAAIVIGVGGGKTLDTAKAVADELDAYIVIVPTAASTDAPTSALSVIYSDDGVFESYRFYKKNPDLVLVDTKIIAN  160 (366)
T ss_dssp             HHHTTCSEEEEEESHHHHHHHHHHHHHHTCEEEEEESSCCSSCTTCSEEEEECTTSCEEEEEECSSCCSEEEEEHHHHHT
T ss_pred             HHCCCCCEEEEECCCCCCCCHHEEEECCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCHHH
T ss_conf             62038868998168864422000120466535402434434320013212323567422110114557789998610432


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 lP~~~~~sg~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (366)
T d1jq5a_         161 APPRLLASGIADALATWVEARSVIKSGGKTMAGGIPTIAAEAIAEKCEQTLFKYGKLAYESVKAKVVTPALEAVVEANTL  240 (366)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             32788898677788899999998860654323034479999999999999987468876667635658999999999998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~g~~~~~~~~~~~H~i~h~l~~~~g~~~~~~HG~~va~g~~~~~~l~~~~~~~~~~~~~l~~~lglP~~L~dlgi~~~~  320 (366)
T d1jq5a_         241 LSGLGFESGGLAAAHAIHNGFTALEGEIHHLTHGEKVAFGTLVQLALEEHSQQEIERYIELYLCLDLPVTLEDIKLKDAS  320 (366)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHGGGSCSGGGGSCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCCCSTTTTTCTTCC
T ss_pred             HHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCC
T ss_conf             60433467876645211012676237764767633779999999998428899999999999986999999994989777


Q ss_pred             ---------------------------------------------C
Q ss_conf             ---------------------------------------------9
Q 003496          278 ---------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------~  278 (815)
                                                                   .
T Consensus       321 ~~~l~~ia~~a~~~~~~~~nP~~~t~edi~~il~~a~~~~~~~~~~  366 (366)
T d1jq5a_         321 REDILKVAKAATAEGETIHNAFNVTADDVADAIFAADQYAKAYKEK  366 (366)
T ss_dssp             HHHHHHHHHHHTSTTCGGGGTCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999840874147999999999999999999999987209

>d1u5ua_ e.5.1.2 (A:) Allene oxide synthase-lipoxygenase protein, N-terminal domain {Black sea rod (Plexaura homomalla) [TaxId: 47982]}

class: Multi-domain proteins (alpha and beta)
fold: Heme-dependent catalase-like
superfamily: Heme-dependent catalase-like
family: Allene oxide synthase
domain: Allene oxide synthase-lipoxygenase protein, N-terminal domain
species: Black sea rod (Plexaura homomalla) [TaxId: 47982]

Probab=100.00  E-value=0  Score=27572.33  Aligned_cols=1  Identities=100%  Similarity=0.801  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~HakG~ga~G~f~v~~d   80 (366)
T d1u5ua_           1 WKNFGFEIFGEKYGQEELEKRIKDEHTPPPDSPVFGGLKLKLKKEKFKTLFTLGTTLKGFRRATHTVGTGGIGEITIVND   80 (366)
T ss_dssp             CCCCHHHHHHHHHCHHHHHHHHHHHTSCCCCCTTTHHHHHHHHHHHHHHHHHHHHHHTTTSCSSSCSEEEEEEEEEECSS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECC
T ss_conf             97620778877632577664000457899874223475431189999999865411468756654775645999998079


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~f~~G~~~Pv~vRfS~~~G~~D~~~d~RG~AiKf~~~~ge~~~D~v~~n~pvF~~rd~~~F~~~~~a~k~~p~  160 (366)
T d1u5ua_          81 PKFPEHEFFTAGRTFPARLRHANLKYPDDAGADARSFSIKFADSDSDGPLDIVMNTGEANIFWNSPSLEDFVPVEEGDAA  160 (366)
T ss_dssp             CCSCCCSSSCTTCEEEEEEEEEBSSCSCTTSEECBEEEEESSSSSSCCSCEEEEEESSSCSCCSHHHHHHHTTCCTTHHH
T ss_pred             CHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCHH
T ss_conf             01655876179975679999258888865567877369987658987325786337774304798886888860587637


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~f~~~~Pe~~~~~~~~~r~~P~s~~~~~y~s~~tf~fvn~~G~~~yvK~~~~P~~~~~~~~~e~~~~~~~~~~~~~~~~  240 (366)
T d1u5ua_         161 EEYVYKNPYYYYNLVEALRRAPDTFAHLYYYSQVTMPFKAKDGKVRYCRYRALPGDVDIKEEDESGRLTEEEQRKIWIFS  240 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHCEESCSCGGGCCEECCSCEEEECTTCCEEEEEEEEEESSSCCCGGGCTTCCCHHHHTTTTCCS
T ss_pred             HHHHHCCHHHHHHHHHHCCCCCCCCCCCCEECCCCEEEECCCCCEEEEEEEEEECCCCCCCCHHHHHCCCHHHHHHHCCC
T ss_conf             89987098999999985577999834475002261787847898899999998457776642444323722344321246


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~d~Lr~dl~~~l~~g~~~~~l~vQl~~~~d~d~~~i~D~Tk~Wpe~~~P~~~vG~ltl~~~~~~~e~EqlaF  320 (366)
T d1u5ua_         241 RHENEKRPDDYLRKEYVERLQKGPVNYRLQIQIHEASPDDTATIFHAGILWDKETHPWFDLAKVSIKTPLSPDVLEKTAF  320 (366)
T ss_dssp             CCTTCCSCTTHHHHHHHHHHHHSCEEEEEEEEEEECCTTCCGGGGCTTSCCCTTTSCCEEEEEEEEEEECCHHHHHHCCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHCC
T ss_conf             54102576377899999998679954999999546354789998887516886567637879999799897057576524


Q ss_pred             ---------------------------------------------C
Q ss_conf             ---------------------------------------------9
Q 003496          278 ---------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------~  278 (815)
                                                                   .
T Consensus       321 ~P~~~~pgi~~~~~~~~~d~~si~~~R~~vY~~s~~~R~~~~~~~~  366 (366)
T d1u5ua_         321 NIANQPASLGLLEAKSPEDYNSIGELRVAVYTWVQHLRKLKIGSLV  366 (366)
T ss_dssp             CTTCCCTTSCCCCCSSSSSTTHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             8755699837778522243442888999999999998754501569

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=0  Score=27571.77  Aligned_cols=1  Identities=0%  Similarity=-0.826  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~r~~~~~~~~~~~i~~~g~~~i~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a   80 (366)
T d2aeua1           1 LRLEKARKIILEILNEKGRDALYDLSGLSGGFLIDEKDKALLNTYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSA   80 (366)
T ss_dssp             CCCCHHHHHHHHHHHHTCGGGCEECSSCCCCCCCCHHHHHHHTSTTHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHH
T ss_pred             CCHHHHHHHHHHHHCHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHH
T ss_conf             96366788899985633330275432688888864889999998438245689999999987068984479996889999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~l~al~~~~~vi~~~~~~~~~~~~~~~~l~g~~~v~~~d~e~l~~~i~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia  160 (366)
T d2aeua1          81 ILATILALKPKKVIHYLPELPGHPSIERSCKIVNAKYFESDKVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTA  160 (366)
T ss_dssp             HHHHHHHHCCSEEEEECSSSSCCTHHHHHHHHTTCEEEEESCHHHHHTTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCEEECCCCHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf             99999983899979994699862419988976288677799999999736877607999945888867879999999874


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~~G~i~~~~~~i~~~~~~~~~~g~~~~~~~~~a~~  240 (366)
T d2aeua1         161 KNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIY  240 (366)
T ss_dssp             HHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCSCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCHHHCCCEEEEECCCCCCCCCCEEEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             00817899956721432364468987662861787136444545521589706778999999972235568779899888


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~aL~tl~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ll~~~gV  320 (366)
T d2aeua1         241 RALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGI  320 (366)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCE
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCEEECCCCHHHHHHHHHHHCCE
T ss_conf             89986049999999999999999988604111133566667543457630110477760102456879999999981988


Q ss_pred             ---------------------------------------------C
Q ss_conf             ---------------------------------------------9
Q 003496          278 ---------------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------------~  278 (815)
                                                                   .
T Consensus       321 ~~ip~~~~p~~~~~lRis~~~~~~~~i~~d~l~~ai~~~lK~~~~~  366 (366)
T d2aeua1         321 ITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAFKS  366 (366)
T ss_dssp             ECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHTCC
T ss_pred             EEEECCCCCCCCCEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf             9997898889998799951655411089999999999999998459

>d1fn9a_ d.196.1.1 (A:) Outer capsid protein sigma 3 {Reovirus [TaxId: 10891]}

class: Alpha and beta proteins (a+b)
fold: Outer capsid protein sigma 3
superfamily: Outer capsid protein sigma 3
family: Outer capsid protein sigma 3
domain: Outer capsid protein sigma 3
species: Reovirus [TaxId: 10891]

Probab=100.00  E-value=0  Score=27507.55  Aligned_cols=1  Identities=0%  Similarity=-1.391  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 MEVRlPNfHSvVE~I~nSYe~rp~~yst~egWd~~~f~~PDVIkVG~AYCCaQCCGVLGapp~~~~~FPHHrCHQq~~R~   80 (365)
T d1fn9a_           1 MEVCLPNGHQVVDLINNAFEGRVSIYSAQEGWDKTISAQPDMMVCGGAVVCMHCLGVVGSLQRKLKHLPHHRCNQQIRHQ   80 (365)
T ss_dssp             CCCCCCCHHHHHHHHHHHTTTCCCEEBTTTBTCCSSCCCCSEEEETTEEEETTTTEEEEEGGGTCCSCCCCCCCCCCCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf             96446771149999998874577644520131454314876599867587400154336786678607613676776404


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 dtPLLrfvgRvTaH~KRgmLd~~a~~~~~i~D~~~e~~~rv~~egg~lvE~~~~~lD~~s~~~SI~sdWT~PLe~~~dlD  160 (365)
T d1fn9a_          81 DYVDVQFADRVTAHWKRGMLSFVAQMHEMMNDVSPDDLDRVRTEGGSLVELNWLQVDPNSMFRSIHSSWTDPLQVVDDLD  160 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCCEEEECCGGGSSTTSTTTCTTCCTTSCCCCCTTHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHCCCCCCHHCCCCCC
T ss_conf             75577655578887765279999999999873077776676636886331333421606653334304677201014420


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 tr~D~~~tal~~MIDsSdl~pnf~mrdpshafngvkl~gdarqt~fsrtf~~rsslewgvmvydysele~dp~kgr~yr~  240 (365)
T d1fn9a_         161 TKLDQYWTALNLMIDSSDLIPNFMMRDPSHAFNGVKLGGDARQTQFSRTFDSRSSLEWGVMVYDYSELEHDPSKGRAYRK  240 (365)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEESSEESCTHHHHTTSCBCGGGGGCCCCSSCCTTSCCCCCCEEECCHHHHHCGGGCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEEEHHHHCCCCCCCCHHHH
T ss_conf             35789999888600165305332415833322662005740002000025776631444799765663368544502355


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 elvtpardfghfglshysrattp~lgkmpavfsgmltgnckmyp~i~gtak~kt~~kl~~avn~~wgvekirya~gpgg~  320 (365)
T d1fn9a_         241 ELVTPARDFGHFGLSHYSRATTPILGKMPAVFSGMLTGNCKMYPFIKGTAKLKTVRKLVEAVNHAWGVEKIRYALGPGGM  320 (365)
T ss_dssp             HHTSTHHHHCCGGGCCCCEEECCCSTTCCEEECCGGGTSCCEEECCCHHHHHGGGHHHHHHHHHHSCHHHHHHHHCTTHH
T ss_pred             HHCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCC
T ss_conf             53673021364441000223671002562565310147621431023620024378899987745403420221168863


Q ss_pred             --------------------------------------------C
Q ss_conf             --------------------------------------------9
Q 003496          278 --------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------~  278 (815)
                                                                  .
T Consensus       321 tgwy~rtmqqapivltpa~ltmfpdt~kfgd~~~pvmigdpmi~g  365 (365)
T d1fn9a_         321 TGWYNRTMQQAPIVLTPAALTMFPDTIKFGDLNYPVMIGDPMILG  365 (365)
T ss_dssp             HHHHHHHHHHHHHHTSCGGGGCCCSSCSSCSSSSCEEECCCEEEC
T ss_pred             CHHHHHHHHHCCEEECHHHHCCCCCCCCCCCCCCCEECCCCCCCC
T ss_conf             324443453088673468850277742135667863317864369

>d1um0a_ d.258.1.1 (A:) Chorismate synthase, AroC {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a+b)
fold: Chorismate synthase, AroC
superfamily: Chorismate synthase, AroC
family: Chorismate synthase, AroC
domain: Chorismate synthase, AroC
species: Helicobacter pylori [TaxId: 210]

Probab=100.00  E-value=0  Score=27504.91  Aligned_cols=1  Identities=0%  Similarity=-1.026  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 Mns~G~~~r~tt~GESHG~~ig~vIdG~PaGl~i~~e~I~~~L~RR~pG~~~~~t~R~E~D~veilSGv~~G~TtG~PI~   80 (365)
T d1um0a_           1 MNTLGRFLRLTTFGESHGDVIGGVLDGMPSGIKIDYALLENEMKRRQGGRNVFITPRKEDDKVEITSGVFEDFSTGTPIG   80 (365)
T ss_dssp             CCEECSSSEEEECCSCCSSEEEEEEECCCBTCBCCHHHHHHHHHHHTTCCSSCCCHHHHSCEEEECSSEETTEECSSCEE
T ss_pred             CCCCCCCEEEEEEECCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECEECCEECCCCCE
T ss_conf             98764422788515578884489992408688858999999986679999998766899982799027368826577405


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~I~N~d~~s~dy~~~~~~pRPGHAD~~~~~KYg~~D~RgggRsSaReTa~rVaaGaiAk~lL~~~gI~v~~~v~~IG~i  160 (365)
T d1um0a_          81 FLIHNQRARSKDYDNIKNLFRPSHADFTYFHKYGIRDFRGGGRSSARESAIRVAAGAFAKMLLREIGIVCESGIIEIGGI  160 (365)
T ss_dssp             EEEECCCSCCCCCCCCTTBCCTTSTHHHHHHHHCCCCCCCTTCSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEETTE
T ss_pred             EEECCCCCCCCCHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC
T ss_conf             55414656751456664257777761111100785367888618899999999999999988875471589999944544


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSvGG~ve~~~~gv~~~~g~P~GlG~P~f~kLda~LA~A~mSI  240 (365)
T d1um0a_         161 KAKNYDFNHALKSEIFALDEEQEEAQKTAIQNAIKNHDSIGGVALIRARSIKTNQKLPIGLGQGLYAKLDAKIAEAMMGL  240 (365)
T ss_dssp             ECSSCCHHHHHHSTTCBSCHHHHHHHHHHHHHHHHTTCCBCEEEEEEEEESSTTCCCCSCCSBTTTBCHHHHHHHHHHTS
T ss_pred             CCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             45431011202444036872667888999999985188768668999855643444786557876421236999877425


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 pAvKgVE~G~Gf~~a~~~GSe~nD~~~~~~~~tN~aGGi~GGiSnG~pI~~rva~KP~sSI~~pq~Tvd~~~~e~~~~~~  320 (365)
T d1um0a_         241 NGVKAVEIGKGVESSLLKGSEYNDLMDQKGFLSNRSGGVLGGMSNGEEIIVRVHFKPTPSIFQPQRTIDINGNECECLLK  320 (365)
T ss_dssp             TTEEEEEETTGGGGGGSBHHHHCCCEETTEESCCTTTTEETTEECSSCEEEEEEECCCSCCSSCEEEEBTTSCEEEECCC
T ss_pred             CCEEEEEECCCHHHHHCCHHHHCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEEECCCCCCCCCCCCEECCCCEEEEEEC
T ss_conf             33235641454666652576506732478874567785105767887669999957875567755435779987776016


Q ss_pred             --------------------------------------------C
Q ss_conf             --------------------------------------------9
Q 003496          278 --------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------~  278 (815)
                                                                  .
T Consensus       321 gRhDpCivprA~~V~EAm~alvlaD~~L~~~~~~~~~~k~~~~~~  365 (365)
T d1um0a_         321 GRHDPCIAIRGSVVCESLLALVLADMVLLNLTSKIEYLKTIYNEN  365 (365)
T ss_dssp             SCCCSCTHHHHHHHHHHHHHHHHHHHHHHGGGSBHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             988970726528999999999999999997563599999874179

>d2pnwa1 b.52.1.4 (A:5-369) Membrane-bound lytic murein transglycosylase A, MLTA {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: MLTA-like
domain: Membrane-bound lytic murein transglycosylase A, MLTA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=0  Score=27504.14  Aligned_cols=1  Identities=0%  Similarity=-0.925  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 f~l~pvsf~~LPGW~~Dd~~~al~Af~~SC~~l~~~~~~~~~~~~~t~~~~~~~c~~a~~~~~~~~~~aR~Ffe~~F~py   80 (365)
T d2pnwa1           1 FSIDEVSFRDLPGWGQDDPRKLFPAMATILSHLRNAKPYRTGALGITAAELVSLLELAERGQVNSPEQARQFFETNSVPF   80 (365)
T ss_dssp             CEEEECCGGGSTTGGGCCCTTHHHHHHHHHHHHTSSCCCCCCTTCCCHHHHHHHHHHHHHCCCCSHHHHHHHHHHHEEEE
T ss_pred             CCCEECCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCEEE
T ss_conf             96337188778894112499999999999998721785545666778999999999998535699899999999718899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~v~~~~~~~Gl~TGYYEP~l~gS~~~~~~y~~PlY~~P~dLv~vdl~~f~~~l~~~~~~gR~~~~~~~py~~R~~I~~g~  160 (365)
T d2pnwa1          81 RISPAQGKSGFVTAFYEPELEVSATPDDVWRYPIYRRPPELVDIDNDNRPDGFDPSYAFGKADEEGISYFPDRRAIDEGC  160 (365)
T ss_dssp             EEEC----CEEEEEEEECEEEEESSCCSSSCEEEEBCCTTEEECCTTTCCTTCCTTCCEEEEETTEEECCCCHHHHHTTT
T ss_pred             EECCCCCCCEEEEEEEEEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCC
T ss_conf             94048987536898667767000378988987744689531006622255434665302443168766777445554465


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 l~~~g~elaw~~d~vd~fflqIQGSgrv~l~dG~~~rv~yag~NG~pY~sigr~Li~~G~i~~~~~sm~~ir~wl~~nP~  240 (365)
T d2pnwa1         161 LRGRGLEIAWARSKVDLFFVHVQGAARLVFPDGAIKRITYAAKAGHVFSPIGRLLLDRGELDPKTISMQTIRQWLADHPD  240 (365)
T ss_dssp             TTTSSCEEEEESCHHHHHHHHHHTEEEEECTTSCEEEEEEEEECSCCCCCHHHHHHHTTCSCTTTCCHHHHHHHHHHCGG
T ss_pred             CCCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCHHHCCHHHHHHHHHHCHH
T ss_conf             46778623673685777886303617999089998999871678986505679998768878210799999999997969


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~ll~~N~syvFFr~~~~~~~~~Gp~Ga~gvpLtp~rSiAvD~~~~plG~p~~l~~~~~~~~~~~~~~~rl~~aqDTG  320 (365)
T d2pnwa1         241 EVDGVLWHNRSYIFFREADVAGLDMGPIAAAKVPLVAGRALAVDRLIHTFGLPFFIHAPTLTHLDDGKPFARLMLALDTG  320 (365)
T ss_dssp             GHHHHHTTCCCCEEEEEC-------CCBCTTSSBCCTTTEEECCTTTCCTTCEEEEEETTCCTTTTTSCEEEEEEEEECC
T ss_pred             HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEECCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECC
T ss_conf             99999860997599887788776789756137120125035405542578865999656777689987100669997446


Q ss_pred             --------------------------------------------C
Q ss_conf             --------------------------------------------9
Q 003496          278 --------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------~  278 (815)
                                                                  .
T Consensus       321 gAIkG~~R~D~f~G~G~~A~~~Ag~~~~~g~~~~Llpk~~~~r~~  365 (365)
T d2pnwa1         321 SAIVGPARGDIFTGSGFEAGELAGTVRNEADFYILLPRIAAERYR  365 (365)
T ss_dssp             TTCCSTTEEEEEEEESHHHHHHHHTCEEEEEEEEEEEHHHHGGGC
T ss_pred             CCCCCCCCEEEEEECCHHHHHHHHCCCCCEEEEEEEECCHHHHCC
T ss_conf             523689726997408889998860768744799998734354439

>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Pyruvate dehydrogenase E1-alpha, PdhA
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=0  Score=27504.46  Aligned_cols=1  Identities=0%  Similarity=-0.725  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~p~ls~e~l~~~yr~M~l~R~~e~~~~~l~~qG~ig~~h~~~GqEa   80 (365)
T d1w85a_           1 TFQFPFAEQLEKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEA   80 (365)
T ss_dssp             CCCCCHHHHHHHHHHTCCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHH
T ss_pred             CCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf             98797433321022139769999999999885457999999999999999999999999999997799656008898699


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~vg~~~~l~~~D~i~~~yR~hg~~la~G~~~~~~~~~~~G~~~g~~~~~~~~~~~~~~ivG~~~p~AvG~A~a~k~~~~  160 (365)
T d1w85a_          81 SQIASHFALEKEDFILPGYRDVPQIIWHGLPLYQAFLFSRGHFHGNQIPEGVNVLPPQIIIGAQYIQAAGVALGLKMRGK  160 (365)
T ss_dssp             HHHHHHHTCCTTCEEECCSSCHHHHHHTTCCHHHHHHHHHTCGGGGCCCTTCCBCCCCCSTTHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCCCEEEECCCCHHEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             99999986797687631366112255569999999986279988667888755605533357666412567765643046


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~~aist~~~~~~~~~~~~~r~~~~Gi~~~~vDG~D~~~v~~  240 (365)
T d1w85a_         161 KAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYA  240 (365)
T ss_dssp             SCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHH
T ss_pred             CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHH
T ss_conf             88146631677643126888887764336674379997024333322202133211111012357617981440687999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~dd~~~~YR~~eEi~~w~~~DPI~~~~~~L~~~g~~~~~el~~i~~e~~~  320 (365)
T d1w85a_         241 AVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKE  320 (365)
T ss_dssp             HHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHHHHTTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             99999997423796179974134356667868863124774789998848989999999998799999999999999999


Q ss_pred             --------------------------------------------C
Q ss_conf             --------------------------------------------9
Q 003496          278 --------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------~  278 (815)
                                                                  .
T Consensus       321 eV~~A~~~A~~sP~P~~~~l~~~Vy~e~p~~l~eq~~~~~~~~~~  365 (365)
T d1w85a_         321 EIKEAIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYKEKESK  365 (365)
T ss_dssp             HHHHHHHHHHTSCCCCHHHHHHTSCSSCCHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf             999999999868998989998453238998899999999887469

>d1u1ha2 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: UROD/MetE-like
family: Cobalamin-independent methionine synthase
domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=0  Score=27501.42  Aligned_cols=1  Identities=0%  Similarity=-1.490  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~lpTT~VGS~PRp~eLk~a~e~~~~G~is~eel~~~~~~ai~~~v   80 (365)
T d1u1ha2           1 EGVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKVSEEDYVKAIKEEIKKVV   80 (365)
T ss_dssp             THHHHHTTTTSSCCCSSSCCHHHHHHHHHHHSCCCSSCBBCCSBCCCCSCCC-------------CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             96899988089865267983789999999847999986232477889989999999976699999999999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~Q~~aGidiItDGE~~r~d~~~~f~~~l~G~~~~~~~~~~~~~~~~~~~p~~~g~i~~~~~~~~~~~~~~~~~~~~~~k  160 (365)
T d1u1ha2          81 DLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMK  160 (365)
T ss_dssp             HHHHTTCCSBBCCBCTTCSCTTHHHHTTSTTEECCSSCCEEEETTEEECCCEECSCCCCCSCSSHHHHHHHTTSCSSCBE
T ss_pred             HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCEEEECCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf             99998479967639813035999999752670000464157469711066041475446676408999998850122234


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~i~gp~~l~~~~~~~~y~~~~e~~~dLa~ay~~el~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~n~~~  240 (365)
T d1u1ha2         161 GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITN  240 (365)
T ss_dssp             EEEECHHHHHHTSEECSSSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECTTTTTTCCSSGGGHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             45550368853126668899899999999999999999996699389957628764321242159999999999999998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~v~~~~~~g~~~~~~~~l~~l~vd~l~le~~~~~~~~l~~~~~~~p~~K~l~~GVVd~r~~~~E~~e~v~~ri  320 (365)
T d1u1ha2         241 CGVQDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIADRV  320 (365)
T ss_dssp             TTSCTTSEEEEEESCSCCTTTHHHHHTTCCSEEEECCSSSCGGGGGGTSSSSCCCSEEEECCSCTTSSSCCCHHHHHHHH
T ss_pred             HCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHH
T ss_conf             43566655899732655412478885477420001103586278887775288998899888827999879999999999


Q ss_pred             --------------------------------------------C
Q ss_conf             --------------------------------------------9
Q 003496          278 --------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------~  278 (815)
                                                                  .
T Consensus       321 ~~a~~~v~~erl~lspdCGf~~l~~~~a~~KL~~lv~~a~~vr~e  365 (365)
T d1u1ha2         321 NKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLIRSQ  365 (365)
T ss_dssp             HHHHTTSCTTTBCBCCSSCCTTSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHCCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999973885539981888999799899999999999999999659

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=100.00  E-value=0  Score=27500.42  Aligned_cols=1  Identities=0%  Similarity=-1.323  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~L~~~i~~~i~~~G~i~f~~fM~~~LY~p~~GYY~~~~~iG~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~~~~   80 (365)
T d1zkda1           1 IDQTALATEIKRLIKAAGPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQT   80 (365)
T ss_dssp             CCSSHHHHHHHHHHHHHCSEEHHHHHHHHHHCTTTCTTTCC--------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             97207899999999956985599999997079986344789978899886788734799999999999999997177766


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~~~i~w~~~~~~~~~~~g~iiaNE~fDA  160 (365)
T d1zkda1          81 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWHDSFEDVPEGPAVILANEYFDV  160 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEEESSGGGSCCSSEEEEEESSGGG
T ss_pred             CEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCEECCCHHHCCCCCEEEEECCCCCC
T ss_conf             16995188611788866554123311355405898435456778898874166540111474243558759993255755


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 lPv~~~~~~~~~~~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~G~~l~i  240 (365)
T d1zkda1         161 LPIHQAIKRETGWHERVIEIGASGELVFGVAADPIPGFEALLPPLARLSPPGAVFEWRPDTEILKIASRVRDQGGAALII  240 (365)
T ss_dssp             SCCEEEEEETTEEEEEEEEECTTSCEEEEECSSCCTTCGGGSCGGGGGCCTTCEEEECCSHHHHHHHHHHHHHCEEEEEE
T ss_pred             CCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             00128997475421322232255204776310212467763033443147886323565899998765666405653433


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 DYG~~~~~~~~~l~~~~~h~~~d~l~~pG~~DIT~~VnFs~L~~~~~~~g~~~~~~~tQ~~FL~~~GI~~~~~~l~~~~~  320 (365)
T d1zkda1         241 DYGHLRSDVGDTFQAIASHSYADPLQHPGRADLTAHVDFDALGRAAESIGARAHGPVTQGAFLKRLGIETRALSLMAKAT  320 (365)
T ss_dssp             EEEESSCCBCCCCEEECSSSEECTTSSTTSSEEECCEEHHHHHHHHHHTTCEEEEEEEHHHHHHHTTHHHHHHHHHHTSC
T ss_pred             CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECHHHHHHHHHHCCCCEECCCCHHHHHHHCCHHHHHHHHHCCCC
T ss_conf             10045554444203344443366213898753265118899999987458615234358999997889999999975399


Q ss_pred             --------------------------------------------C
Q ss_conf             --------------------------------------------9
Q 003496          278 --------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------~  278 (815)
                                                                  .
T Consensus       321 ~~~~~~~~~~~~~Li~p~~~~MGe~FKVl~~~~~~~~~~~gf~~~  365 (365)
T d1zkda1         321 PQVSEDIAGALQRLTGEGRGAMGSMFKVIGVSDPKIETLVALSDD  365 (365)
T ss_dssp             HHHHHHHHHHHHHHHCEETTEETTTEEEEEEECTTCCCCTTTTCC
T ss_pred             HHHHHHHHHHHHHHCCCCCHHCCHHEEEEEEECCCCCCCCCCCCC
T ss_conf             889999999999726988100211279999817999988898999

>d3c8ya1 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalytic domain {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: Fe-only hydrogenase
superfamily: Fe-only hydrogenase
family: Fe-only hydrogenase
domain: Fe-only hydrogenase, catalytic domain
species: Clostridium pasteurianum [TaxId: 1501]

Probab=100.00  E-value=0  Score=27498.85  Aligned_cols=1  Identities=0%  Similarity=-0.991  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~i~~v~~~l~~~~k~vV~siaP~~r~sla~~f~l~~~~~~~~kl~~~lk~LGF~~V~dt~~gad~~~~e~~~E~~~r~~~   80 (365)
T d3c8ya1           1 HMDRVKNALNAPEKHVIVAMAPSVRASIGELFNMGFGVDVTGKIYTALRQLGFDKIFDINFGADMTIMEEATELVQRIEN   80 (365)
T ss_dssp             CHHHHHHHHHCTTCEEEEEECGGGGGTGGGGGTCCSSCCCHHHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHC
T ss_conf             97899999968995899998927899999984899430028999999998699999983788899999999999999865


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~P~isS~CPg~V~yiEk~~PeLip~ls~v~SP~~~~g~liK~~~~~~~~~~~~~i~~V~I~PC~aKK~Ea~r~e~~~  160 (365)
T d3c8ya1          81 NGPFPMFTSCCPGWVRQAENYYPELLNNLSSAKSPQQIFGTASKTYYPSISGLDPKNVFTVTVMPCTSKKFEADRPQMEK  160 (365)
T ss_dssp             TCSCCEECCCCHHHHHHHHHHCGGGGGGBCCBCCHHHHHHHHHTTHHHHTTCCCGGGEEEEEEESCSHHHHHHTCTTSEE
T ss_pred             CCCCCEEEECCHHHHHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCCCCCCC
T ss_conf             89987598479899999999675653325678888999999999987876099911289999834643224542821245


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~dVD~VLT~~El~~~l~~~~i~~~~l~~~~~~~~~~~~s~~g~~~~~sGG~~~~~~~~~~~~~~~~~~~~~~~~~~r  240 (365)
T d3c8ya1         161 DGLRDIDAVITTRELAKMIKDAKIPFAKLEDSEADPAMGEYSGAGAIFGATGGVMEAALRSAKDFAENAELEDIEYKQVR  240 (365)
T ss_dssp             TTEESCSEEEEHHHHHHHHHHTTCCGGGCCCCCCCGGGTCCCHHHHTTTSTTHHHHHHHHHHHHHHHTCCCSCCCCGGGC
T ss_pred             CCCCCCCEEEEHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECC
T ss_conf             78987488953999999999759992238886668766777866512123663999999998774368865552024306


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 g~~~i~~~~~~~~~~~~~~~~v~G~~n~~~~l~~~k~~~~~~~fvEvmACpgGCinGgGq~~~~~~~~~~~~~~~~r~~~  320 (365)
T d3c8ya1         241 GLNGIKEAEVEINNNKYNVAVINGASNLFKFMKSGMINEKQYHFIEVMACHGGCVNGGGQPHVNPKDLEKVDIKKVRASV  320 (365)
T ss_dssp             SSCSEEEEEEEETTEEEEEEEEESHHHHHHHHHTSGGGSSCCCEEEEESSTTSGGGCTTSCCCCHHHHHHSCHHHHHHHH
T ss_pred             CCCCEEEEEEEECCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             87751899997089178999960299999999987459999728998068998707998688896013268999999998


Q ss_pred             --------------------------------------------C
Q ss_conf             --------------------------------------------9
Q 003496          278 --------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------~  278 (815)
                                                                  .
T Consensus       321 l~~~d~~~~~r~~~en~~~~~ly~~~l~~p~~~~~~~lLHT~y~~  365 (365)
T d3c8ya1         321 LYNQDEHLSKRKSHENTALVKMYQNYFGKPGEGRAHEILHFKYKK  365 (365)
T ss_dssp             HHHHHHHCSCCSGGGCHHHHHHHHHTTCSTTSHHHHHHSBCCCCC
T ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCC
T ss_conf             875430377788855999999999986799838999972687029

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=100.00  E-value=0  Score=27502.04  Aligned_cols=1  Identities=100%  Similarity=1.167  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~k~~r~~l~fdDVllvP~~st~~s~~vdl~~~it~~~~~~iPIIsA~MDtV~~~~mA~~ls~~Gglgvlhr~~~~~   80 (365)
T d1zfja1           1 SNWDTKFLKKGYTFDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMDTVTGSKMAIAIARAGGLGVIHKNMSIT   80 (365)
T ss_dssp             CGGGGSSCCCCCCGGGEEECCCCCCSCGGGCCCCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHH
T ss_pred             CCCCHHHHHCCCCCCEEEEECCCCCCCHHHCEEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEECCCCCHH
T ss_conf             97211223026880108985787776776726237964895268988978988768889999999779916974866789


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 e~~~~~~~~~~~~~~~~v~aavGv~~~~~er~~~l~~agvd~ivID~A~G~s~~~~~~i~~ik~~~~~~~iIaGNV~T~e  160 (365)
T d1zfja1          81 EQAEEVRKVKRSEGRLLVAAAVGVTSDTFERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAE  160 (365)
T ss_dssp             HHHHHHHHHHHHTSCBCCEEEECSSTTHHHHHHHHHHHTCSEEEECCSCTTCHHHHHHHHHHHHHCSSSCEEEEEECSHH
T ss_pred             HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCHH
T ss_conf             98877665443037569999944681277899999986998899978865543214788999865887644411343489


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~a~~L~~aGaD~VkVGiG~Gs~CTTr~~tGvGvPq~sai~~~~~~~~~~~~~iIADGGi~~~GDi~KAla~GAd~VMlG~  240 (365)
T d1zfja1         161 GARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGS  240 (365)
T ss_dssp             HHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEEST
T ss_pred             HHHHHHHCCCCEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHCCCCEEEECC
T ss_conf             99999866976378640256445676301342242138999999997579569805884762066655321587898642


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~lAg~~EsPG~~~~~~g~~~k~~~Gm~s~~a~~~~~~~r~~~~~~~~~~~~~~eG~~~~v~~~G~~~~~~~~l~gglrs~  320 (365)
T d1zfja1         241 MFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKKGSSDRYFQGSVNEANKLVPEGIEGRVAYKGAASDIVFQMLGGIRSG  320 (365)
T ss_dssp             TTTTBSSCCCCEEEETTEEEEEEECTTSHHHHCC--------------CCCCCSBCEEEEECCBCHHHHHHHHHHHHHHH
T ss_pred             HHCCCCCCCCCEEEECCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf             21046678974797778475552775557555456644434455443221224684478546787789999999999998


Q ss_pred             --------------------------------------------C
Q ss_conf             --------------------------------------------9
Q 003496          278 --------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------~  278 (815)
                                                                  -
T Consensus       321 m~y~G~~~l~e~~~~~~fv~vt~~~~~E~~~h~~~~~~~~~~y~~  365 (365)
T d1zfja1         321 MGYVGAGDIQELHENAQFVEMSGAGLIESHPHDVQITNEAPNYSV  365 (365)
T ss_dssp             HHHTTCSSHHHHHHHCCEEECCHHHHHHHSCCSSCCSSCBTTBC-
T ss_pred             HHHCCCCCHHHHHHCCEEEEECCCCCCCCCCCCEEEECCCCCCCC
T ss_conf             762487749999629889999922010258862577157899869

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=100.00  E-value=0  Score=27495.95  Aligned_cols=1  Identities=0%  Similarity=-1.990  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~   80 (365)
T d1jofa_           1 PLHHLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHP   80 (365)
T ss_dssp             CEEEEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEE
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCEEEECCCCCEEEEEECCCEEEEEEECCCCEEEEEEEC
T ss_conf             91199999314999899999858889389845445168999777999489899999938947899990899769876412


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~  160 (365)
T d1jofa_          81 IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLY  160 (365)
T ss_dssp             CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred             CCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCEEEEECCCCCEEE
T ss_conf             89986789987899879999932799789986745788742068664033004764675568898115978889999899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~  240 (365)
T d1jofa_         161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP  240 (365)
T ss_dssp             EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred             EEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEEEEECCCC
T ss_conf             82079987999970688716652511112788740899988998669995158998999995598753778731240245


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~  320 (365)
T d1jofa_         241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS  320 (365)
T ss_dssp             TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCC
T ss_conf             56556665444435776316998999978997135787542279999856887144676766777679986478964899


Q ss_pred             --------------------------------------------C
Q ss_conf             --------------------------------------------9
Q 003496          278 --------------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------------~  278 (815)
                                                                  .
T Consensus       321 G~~l~va~~~s~~v~v~~~~~~~l~~~~~~~vp~p~~~~~~~w~~  365 (365)
T d1jofa_         321 DEWMAITDDQEGWLEIYRWKDEFLHRVARVRIPEPGFGMNAIWYD  365 (365)
T ss_dssp             TTEEEEECSSSCEEEEEEEETTEEEEEEEEECCSTTEEEEEEEEC
T ss_pred             CCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEECC
T ss_conf             999999967999499999828867278999889999976879639

>d2jera1 d.126.1.6 (A:2-365) Agmatine iminohydrolase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Porphyromonas-type peptidylarginine deiminase
domain: Agmatine iminohydrolase
species: Enterococcus faecalis [TaxId: 1351]

Probab=100.00  E-value=0  Score=27424.73  Aligned_cols=1  Identities=0%  Similarity=-0.493  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~tP~~~g~rmPaEwep~~~~~l~wP~~~~~w~~~~~~~~~~~~~i~~~ia~~e~V~v~~~~~~~~~~~~~~~~~   80 (364)
T d2jera1           1 AKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPPE   80 (364)
T ss_dssp             CCBCCSCCHHHHTCBCCCTTSCEEEEEEECCCCTTTSGGGGHHHHHHHHHHHHHHHTTSCEEEEECTTTHHHHHHHSCTT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCC
T ss_conf             98456899111387748995500328997689985204677999999999999985887399997928999999757566


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 v~~~~~~~dD~W~RD~GPi~v~~~~g~~~~vdf~FN~wG~k~~~~~~~~~~D~~~~~~ia~~~~~~~~~~~~lvlEGG~i  160 (364)
T d2jera1          81 ITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSF  160 (364)
T ss_dssp             SEEEECCCSSSCHHHHSCEEEECTTSCEEEEEEECCTTTHHHHCSSSCCTTGGGHHHHHHHHHTCCEEEEEEEECCGGGE
T ss_pred             EEEEECCCCCHHHHCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCE
T ss_conf             49999368875764551389991677567633664687655555555410278999999998366544665737748966


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~dG~GtlltTe~~ll~~nRNp~ls~~~ie~~Lk~~LGv~~viwl~~gl~~DdTdGHID~~arFi~~~~il~~~~~d~~~  240 (364)
T d2jera1         161 HVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNS  240 (364)
T ss_dssp             EECSSSEEEEEHHHHTSTTTCTTSCHHHHHHHHHHHHTCSEEEEECCCSCTTTTSSCGGGTEEEEETTEEEEECCCCTTS
T ss_pred             EECCCCEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCC
T ss_conf             97799639975455514578999899999999999869863677658755677777754448994799569984388878


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~L~~~~da~G~~~~i~~lp~P~~~~~~~~~~~~~~~~~~~~~~~g~~l~aSY~Nfli~N~~VivP~fg~  320 (364)
T d2jera1         241 PFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIVPQYGD  320 (364)
T ss_dssp             TTHHHHHHHHHHHHTCBCTTCCBCEEEEECCCSSCEECCTTSCCCCCTTSCCCCTTCEECCCTTCCEEETTEEEEEECSC
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEECCCC
T ss_conf             35799999999997656534898558862689742333333344534575435689886202578999999999902798


Q ss_pred             -------------------------------------------C
Q ss_conf             -------------------------------------------9
Q 003496          278 -------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------~  278 (815)
                                                                 .
T Consensus       321 ~~D~~Al~~l~~~fP~r~Vv~I~~~~i~~~gG~iHCiT~q~P~~  364 (364)
T d2jera1         321 ENDRLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHXITQQEPKR  364 (364)
T ss_dssp             TTHHHHHHHHHHHSTTSEEEEEECHHHHTTTCCTGGGCEEEECC
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECHHHHHCCCCCCHHHHCCCCC
T ss_conf             77899999999888899799971089875698014463127999

>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=27424.00  Aligned_cols=1  Identities=100%  Similarity=0.636  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~pvyiy~~~~~~~~~~hP~~P~R~~~~~~ll~~~gl~~~~~~v~p~~At~~el~~vHs~~Yi~~l~~~~~~~~~~~~~~   80 (364)
T d1t64a_           1 LVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDS   80 (364)
T ss_dssp             CCCEEECCHHHHHHHTCSSSSCCHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHHCSSCCTTT
T ss_pred             CCCEEEECHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCHH
T ss_conf             98869969888416799898829999999999974996688896889799899998299999999998604026444112


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~l~~d~p~~~~~~~~~~~~aG~~l~A~~~~~~g~~~~a~~~~gg~HHA~~~~a~GFC~~NdvaiA~~~~~~~~~RV~  160 (364)
T d1t64a_          81 IEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERIL  160 (364)
T ss_dssp             TTTTCBTTBCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTCSCEE
T ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCEEE
T ss_conf             01067888887703999999985028999999875986500345754464333444454555689999999985103079


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 iiD~DvHhGnGtq~iF~~d~~V~~~SiH~~~~~~~Pgtg~~~e~G~g~g~~~~~NvPL~~g~~d~~y~~~~~~~i~~~~~  240 (364)
T d1t64a_         161 YVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQ  240 (364)
T ss_dssp             EEECSSSCCHHHHHHHTTCSSEEEEEEEECCTTCTTCCCCTTCCCCGGGTTCEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             98523577776044420687544533345567778898873105876445632334125565738999999976678862


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~f~Pd~IvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~p~~~~~~GGY~~~~~ar~w~~~~~~l~g~~~~~~~P~  320 (364)
T d1t64a_         241 AFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPD  320 (364)
T ss_dssp             HHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCCCCSHHHHHHHHHHHHHHHHTCCCCSBCCC
T ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             57998899989714778997778727998999999999835998799979888878999999999999859988866898


Q ss_pred             -------------------------------------------C
Q ss_conf             -------------------------------------------9
Q 003496          278 -------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------~  278 (815)
                                                                 -
T Consensus       321 ~~~~~~~~p~~~~~~~~~~~~~~n~~~~~~~i~~~i~~~l~~~~  364 (364)
T d1t64a_         321 HEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVV  364 (364)
T ss_dssp             CTTGGGGTTTCBSCCCCCSCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             50155409973136686656566999999999999999987429

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=100.00  E-value=0  Score=27423.73  Aligned_cols=1  Identities=0%  Similarity=-1.556  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 rIkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~v~~lv~~~l~G~n~~i~a   80 (364)
T d1sdma_           1 KIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAVDGYNVCIFA   80 (364)
T ss_dssp             CCEEEEEECCCCHHHHHTTCCBCEEECSTTEEEEECSSSSEEEEECSEEECTTCCHHHHHHTTTHHHHHHHTTCEEEEEE
T ss_pred             CEEEEEECCCCCHHHCCCCCCCEEEECCCCEEEECCCCCCCEEEECCEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             96999992789936622589875996799758735789985477788564999998999998999999996698503552


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 YGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~l~~~~~~~~~~  160 (364)
T d1sdma_          81 YGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMV  160 (364)
T ss_dssp             ECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEESSSCEEETTSCTTSCCCCCEEEECTTSCE
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf             23478776201656766551367899998865531034655369999888723632233576545554433133146760


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~~~~~~~~kl~~vDLAGsEr~~~~~~  240 (364)
T d1sdma_         161 SVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGS  240 (364)
T ss_dssp             EEETCCCEEECSHHHHHHHHHHHHHHHCCCSSCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCSCCCC---
T ss_pred             CCCCCEEEEECCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEECHHHCCCCCCCCC
T ss_conf             20353000117788978986406600044534354103336359999999703676503567998404100352001466


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~g~~~~E~~~iN~SL~~L~~vi~aL~~~~~~ipyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~~~eTl~TL~fa~~ak  320 (364)
T d1sdma_         241 AGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVR  320 (364)
T ss_dssp             ------CCCTTCHHHHHHHHHHHHHHHTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHT
T ss_pred             CCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf             67502332335643206899999997499757730112138878634999509999996987001899999999999984


Q ss_pred             -------------------------------------------C
Q ss_conf             -------------------------------------------9
Q 003496          278 -------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------~  278 (815)
                                                                 .
T Consensus       321 ~i~n~p~~n~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~l~~e  364 (364)
T d1sdma_         321 SIVNDPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE  364 (364)
T ss_dssp             TCCCCCCCCEECHHHHHHHTTTTCC-----------CCEECCCC
T ss_pred             HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
T ss_conf             20667835579899999999999999998744027799997559

>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]

Probab=100.00  E-value=0  Score=27423.48  Aligned_cols=1  Identities=0%  Similarity=-1.423  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~pLFsP~~ig~~~LkNRiv~apm~~~~a~~g~p~~~~~~~y~~rA~gGgliite~~~V~~~g~~~~~~~~l~~d~~   80 (364)
T d1icpa_           1 QVDKIPLMSPCKMGKFELCHRVVLAPLTRQRSYGYIPQPHAILHYSQRSTNGGLLIGEATVISETGIGYKDVPGIWTKEQ   80 (364)
T ss_dssp             CCCCCGGGSCEEETTEEESCSEEECCCCCCCCGGGSCCHHHHHHHHHTCCTTCEEECCCEECSGGGCCSTTCCBCSSHHH
T ss_pred             CCCCCCCCCCCEECCEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCEEECCCCCCCCCCCEECHHHH
T ss_conf             99898899972489999678427524489858999797999999999983964999710788873357999853134344


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 i~~~k~l~~~ih~~g~~~~~QL~H~Gr~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f  160 (364)
T d1icpa_          81 VEAWKPIVDAVHAKGGIFFCQIWHVGRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEF  160 (364)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEECCTTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             45677888886237882577640477554554445788875323456531112346565678887311066799999988


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~aA~rA~~AGfDgVeIH~ahGyLl~QFlSp~tN~RtDeYGGsleNR~Rf~~Eii~aIr~~~g~~~i~~r~s~~~~~~~~  240 (364)
T d1icpa_         161 RVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEA  240 (364)
T ss_dssp             HHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTC
T ss_pred             HHHHHHHHHHCCCEEEEECCCCCHHHCEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC
T ss_conf             99999999839986898305762131200110077675444204320167898765420124886466886043224677


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 g~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~vi~~g~~~~~~ae~~l~~g~aD~V~~  320 (364)
T d1icpa_         241 GDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKGTFIVAGGYDREDGNRALIEDRADLVAY  320 (364)
T ss_dssp             CCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHCCSCEEEESSCCHHHHHHHHHTTSCSEEEE
T ss_pred             CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCEEHH
T ss_conf             67516777889987752032245665158655455455447889999986478789978989999999998699765056


Q ss_pred             -------------------------------------------C
Q ss_conf             -------------------------------------------9
Q 003496          278 -------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------~  278 (815)
                                                                 .
T Consensus       321 gR~~iadPd~~~k~~~g~pi~~~~~~~~~~~~~~~g~~~~p~~~  364 (364)
T d1icpa_         321 GRLFISNPDLPKRFELNAPLNKYNRDTFYTSDPIVGYTDYPFLE  364 (364)
T ss_dssp             SHHHHHCTTHHHHHHHTCCCCCCCGGGSSCCCSSTTTTCSCCCC
T ss_pred             HHHHHHCCCHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCC
T ss_conf             79999790499999709998988611342799998848798889

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=100.00  E-value=0  Score=27422.71  Aligned_cols=1  Identities=0%  Similarity=-0.461  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~tP~ei~~~L~~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvG   80 (364)
T d1um8a_           1 LLSYIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSG   80 (364)
T ss_dssp             CCSCCCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSS
T ss_pred             CCCCCCCHHHHHHHHCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
T ss_conf             97779887999999589623808999999999998998887788764044443311112233456787532441899863


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 KTElAk~LA~~~~~~~ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~~~~d~a~  160 (364)
T d1um8a_          81 KTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSG  160 (364)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------C
T ss_pred             HHHHHHHHHHHCCCCEEEHHHHHCCCCHHHHHHHCCCHHHHHHHCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             78999999864435331112220144316676312103445420245899865463010166653134544555512214


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~V~~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (364)
T d1um8a_         161 EGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILH  240 (364)
T ss_dssp             HHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGG
T ss_pred             HHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf             38898645540586122587778767764168996113455411131014566543014454310001100124666530


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~f~PEf~gRi~~iv~f~~L~~~~l~~Il~~~~~~l~kq~~~~l~~~gi~L~~td~a~~~la~~g~d~~~G  320 (364)
T d1um8a_         241 LVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTG  320 (364)
T ss_dssp             GCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCT
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCC
T ss_conf             24578776530079999872301557402099999999879999999999998757927999899999999956587778


Q ss_pred             -------------------------------------------C
Q ss_conf             -------------------------------------------9
Q 003496          278 -------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------~  278 (815)
                                                                 +
T Consensus       321 AR~L~riie~~l~~~~f~~p~~~~~~v~I~~~~V~~~~~~~~i~  364 (364)
T d1um8a_         321 ARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLIIA  364 (364)
T ss_dssp             GGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSCCEEEC
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHCCCCCCEEEC
T ss_conf             36789999999999855587789999997778867998881439

>d1kbla1 c.1.12.2 (A:510-873) Pyruvate phosphate dikinase, C-terminal domain {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate phosphate dikinase, C-terminal domain
domain: Pyruvate phosphate dikinase, C-terminal domain
species: Clostridium symbiosum [TaxId: 1512]

Probab=100.00  E-value=0  Score=27421.84  Aligned_cols=1  Identities=0%  Similarity=-1.091  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~waD~~r~~~v~aN~~~~~d~~~A~~~GAdGIGL~RTEflfl~~~~~p~~~~~~~~~~~e~~~~   80 (364)
T d1kbla1           1 IETQEASVSGSFERIMVWADKFRTLKVRTNADTPEDTLNAVKLGAEGIGLCRTEHMFFEADRIMKIRKMILSDSVEAREE   80 (364)
T ss_dssp             CCEECCCCCHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHTTCCSEEEECCTHHHHSHHHHHHHHHHHHCCSHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHH
T ss_conf             99768887448999999877467107998289999999999769971548888998727876540566663367266799


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~q~~~y~~i~~~~~g~pvtiRtlD~g~dk~~p~~~~~~~~~~~~lg~~~~~~~~~~~~~~E~NP~LG~RGiR~  160 (364)
T d1kbla1          81 ALNELIPFQKGDFKAMYKALEGRPMTVRYLDPPLHEFVPHTEEEQAELAKNMGLTLAEVKAKVDELHEFNPMMGHRGCRL  160 (364)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTCCEEEECCCSCGGGGSCCSHHHHHHHHHHHTCCHHHHHHHHHHHCCSCGGGSSCTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             99998887877899999860898679851568864467873156899998739987887665424455784224433213


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~l~~p~lf~~QlrAilrA~~~~~~~~g~~~~~~Im~Pmv~~~~E~~~~k~~i~~~~~~l~~~~~~~~~~~iG~MiE~Psa  240 (364)
T d1kbla1         161 AVTYPEIAKMQTRAVMEAAIEVKEETGIDIVPEIMIPLVGEKKELKFVKDVVVEVAEQVKKEKGSDMQYHIGTMIEIPRA  240 (364)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEECSHHH
T ss_pred             EEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHH
T ss_conf             42665236888999999999978843875431441131304999999998888899997530387766148775011599


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 al~~d~~~~~vDF~SIGTNDLtQy~la~dRd~~~~~l~~y~~~~i~~~dP~~~~~~~av~~lI~~~~~~~~~~~~~i~vs  320 (364)
T d1kbla1         241 ALTADAIAEEAEFFSFGTNDLTQMTFGFSRDDAGKFLDSYYKAKIYESDPFARLDQTGVGQLVEMAVKKGRQTRPGLKCG  320 (364)
T ss_dssp             HHTHHHHTTTCSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHTTSCSSCTTTSCCTTTHHHHHHHHHHHHHHHCTTCEEE
T ss_pred             HHHHHHHHHHCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             97189987327679963306878887433253255665554420022375104406999999999999999737998699


Q ss_pred             -------------------------------------------C
Q ss_conf             -------------------------------------------9
Q 003496          278 -------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------~  278 (815)
                                                                 .
T Consensus       321 iCGE~asdp~~~~~L~~lGi~~lS~sp~~vp~~r~a~aqa~~~~  364 (364)
T d1kbla1         321 ICGEHGGDPSSVEFCHKVGLNYVSCSPFRVPIARLAAAQAALNN  364 (364)
T ss_dssp             ECSGGGGSHHHHHHHHHTTCSEEEECGGGHHHHHHHHHHHHHHC
T ss_pred             EECCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHCC
T ss_conf             71731159999999998699989978046699999999987439

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=0  Score=27420.68  Aligned_cols=1  Identities=0%  Similarity=-1.159  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 lslddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~   80 (364)
T d1omwa3           1 LTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD   80 (364)
T ss_dssp             CCSTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSS
T ss_pred             CCHHHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECC
T ss_conf             97776851018842889099999999999799999984587542667999999999999985089985889999999899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~  160 (364)
T d1omwa3          81 KLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK  160 (364)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSSCEEECCCTTCEECSSS
T ss_pred             EEEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEECCCCCEEEEEECEEEECCCC
T ss_conf             88999991489838999873255327899999999999999999779622044422167858896798220102333788


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li  240 (364)
T d1omwa3         161 KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLL  240 (364)
T ss_dssp             CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHHHSSSCCCCCCSSSCHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf             64331134554216876038999844104677899999985999888899899999998604688878877899999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~L~~dP~~R~t~~~~~a~eil~Hp~f~~i~~~~~~~~~~~~p~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  320 (364)
T d1omwa3         241 EGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIPPRGEVNAADAFDIGSFDEEDTKGIKLLDSDQEL  320 (364)
T ss_dssp             HHHTCSSTTTSTTTSSSTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCC--------------------CCCCSSSSGG
T ss_pred             HHHCCCCHHHHCCCCCCCHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHH
T ss_conf             99856698880887435799997491023789879962889959379988888687454665881011379889757899


Q ss_pred             -------------------------------------------C
Q ss_conf             -------------------------------------------9
Q 003496          278 -------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------~  278 (815)
                                                                 .
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~q~~~  364 (364)
T d1omwa3         321 YRNFPLTISERWQQEVAETVFDTINAETDRLEARKKTKNKQLGH  364 (364)
T ss_dssp             GTTCCEECHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCC
T ss_conf             84687657637788888876644526578888642271633389

>d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Iron-containing alcohol dehydrogenase
domain: Glycerol dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=0  Score=27419.78  Aligned_cols=1  Identities=0%  Similarity=0.171  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~m~~~~~~P~rii~G~gal~~l~~~l~~~g~r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~v~~~~~~~~~i~~~~~~~   80 (364)
T d1kq3a_           1 HMITTTIFPGRYVQGAGAINILEEELSRFGERAFVVIDDFVDKNVLGENFFSSFTKVRVNKQIFGGECSDEEIERLSGLV   80 (364)
T ss_dssp             CCCBCCCCCSEEEEETTGGGGHHHHHHTTCSEEEEEECHHHHHHTTCTTGGGGCSSSEEEEEECCSSCBHHHHHHHHTTC
T ss_pred             CCCCCEECCCCEEEECCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf             99755778978798059999999999973993899989865564799999998886698699618989807999999975


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~D~IIavGGGs~~D~aK~ia~~~~~P~I~IPTTa~tgse~t~~avi~~~~~~~k~~~~~~~~P~~viiDp~l~~t~P  160 (364)
T d1kq3a_          81 EEETDVVVGIGGGKTLDTAKAVAYKLKKPVVIVPTIASTDAPCSALSVIYTPNGEFKRYLFLPRNPDVVLVDTEIVAKAP  160 (364)
T ss_dssp             CTTCCEEEEEESHHHHHHHHHHHHHTTCCEEEEESSCCCSCTTSSEEEEECTTSCEEEEEECSSCCSEEEEEHHHHHHSC
T ss_pred             HCCCCEEEEECCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCEEEECCHHHHHHH
T ss_conf             20576899813675410101223334210124225433332446513786326775311200244533887716666435


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  240 (364)
T d1kq3a_         161 ARFLVAGMGDALATWFEAESCKQKYAPNMTGRLGSMTAYALARLCYETLLEYGVLAKRSVEEKSVTPALEKIVEANTLLS  240 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCBCTTSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88886217888653777765554214001015555568999999999999988887777640337999999999877875


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 g~~~~~~~~~~~H~~~~~~~~~~~~~~~~HG~~va~~~~~~~~~~~~~~~~~~~i~~l~~~lglP~~L~elGi~~~~~~~  320 (364)
T d1kq3a_         241 GLGFESGGLAAAHAIHNGLTVLENTHKYLHGEKVAIGVLASLFLTDKPRKMIEEVYSFCEEVGLPTTLAEIGLDGVSDED  320 (364)
T ss_dssp             HHHHHHHCCCHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTCCCSGGGGTCTTCCHHH
T ss_pred             HCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHH
T ss_conf             34213445566520002254523764202107899889999875406799999999999985999989992999998999


Q ss_pred             -------------------------------------------C
Q ss_conf             -------------------------------------------9
Q 003496          278 -------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------~  278 (815)
                                                                 -
T Consensus       321 l~~ia~~a~~~~~~~~~~P~~~t~edi~~il~~A~~~~~~~~~~  364 (364)
T d1kq3a_         321 LMKVAEKACDKNETIHNEPQPVTSKDVFFALKAADRYGRMRKNL  364 (364)
T ss_dssp             HHHHHHHHTCTTSGGGGSSSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999998727775658996899999999999999998875579

>d1oc7a_ c.6.1.1 (A:) Cellobiohydrolase II (Cel6) {Humicola insolens, Cel6a [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycosyl hydrolases family 6, cellulases
family: Glycosyl hydrolases family 6, cellulases
domain: Cellobiohydrolase II (Cel6)
species: Humicola insolens, Cel6a [TaxId: 34413]

Probab=100.00  E-value=0  Score=27418.73  Aligned_cols=1  Identities=0%  Similarity=0.204  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~p~~gNPf~g~~~yvnP~~~~~v~~~a~~~~~d~~~~a~~~~va~~Pta~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   80 (364)
T d1oc7a_           1 APYNGNPFEGVQLWANNYYRSEVHTLAIPQITDPALRAAASAVAEVPSFQWLDRNVTVDTLLVQTLSEIREANQAGANPQ   80 (364)
T ss_dssp             CCCCSCTTTTCEECCCHHHHHHHHHTTGGGCCCHHHHHHHHHHTTSCCCEEECSGGGTTTHHHHHHHHHHHHHHTTCSSC
T ss_pred             CCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             99789988898332474077899999873468988999999985378279711477777522778999999987214788


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~lVvY~iP~RDC~a~as~Ge~~~~~~g~~~y~~Yid~I~~~~~~~~~~~~vvIlEPDsL~nlvt~~~~~~c~~~~~~  160 (364)
T d1oc7a_          81 YAAQIVVYDLPDRDCAAAASNGEWAIANNGVNNYKAYINRIREILISFSDVRTILVIEPDSLANMVTNMNVPKCSGAAST  160 (364)
T ss_dssp             EEEEEEECCCTTCSTTSSSCCCCCCGGGTHHHHHHHHHHHHHHHHHHTTTSCEEEEECTTSTHHHHHCTTSHHHHHHHHH
T ss_pred             CEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCHHHHHHHHH
T ss_conf             51389994799987320004897545766468899999999999975688634999777622223306880666778999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~i~yAi~~l~~pnv~vYlDaGhsgWLgw~~n~~~~a~~~a~~l~~ag~~~~vrGFatNvsNy~~~~~~~~~~~~~~n  240 (364)
T d1oc7a_         161 YRELTIYALKQLDLPHVAMYMDAGHAGWLGWPANIQPAAELFAKIYEDAGKPRAVRGLATNVANYNAWSVSSPPPYTSPN  240 (364)
T ss_dssp             HHHHHHHHHHHTCCTTEEEEEECCCTTTTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESTTCCCCSSCSSCCGGGTTC
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             99999999997169973899978877666760001268999999998647864343378704477666667887544578


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~dE~~y~~~l~~~l~~~G~~~~fvIDTsRNG~gp~~~~~~g~WCN~~GaglG~rPt~~t~~~~vDA~lWIKpPGESDG  320 (364)
T d1oc7a_         241 PNYDEKHYIEAFRPLLEARGFPAQFIVDQGRSGKQPTGQKEWGHWCNAIGTGFGMRPTANTGHQYVDAFVWVKPGGECNG  320 (364)
T ss_dssp             SCCSHHHHHHHHHHHHHHTTCCCEEEEECTTCSSSSCSCSSTTCCSSBSSCCCCSCCBSCCCCTTEEEEECCSCTTBCSC
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
T ss_conf             76259999999999997458887448870467889877778888779999826889978999877677887588847788


Q ss_pred             -------------------------------------------C
Q ss_conf             -------------------------------------------9
Q 003496          278 -------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------~  278 (815)
                                                                 -
T Consensus       321 ~~~~~~~~~D~~C~~~~a~~~aP~AG~Wf~~~f~~Lv~NA~P~f  364 (364)
T d1oc7a_         321 TSDTTAARYDYHCGLEDALKPAPEAGQWFNEYFIQLLRNANPPF  364 (364)
T ss_dssp             CCCTTSTTCCGGGGSTTBCSSCCSTTSBCHHHHHHHHHTCSSCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf             88876666676667655789998677752999999997268999

>d1us3a2 c.1.8.3 (A:243-606) Xylanase 10c {Cellvibrio japonicus [TaxId: 155077]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Xylanase 10c
species: Cellvibrio japonicus [TaxId: 155077]

Probab=100.00  E-value=0  Score=27418.63  Aligned_cols=1  Identities=0%  Similarity=-0.494  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~l~~~~~~~f~~G~av~~~~~~~~~~~~~~~~~~~~~~~fn~~t~eN~mKW~~iep~~G~~nf~~~D~~v~~a   80 (364)
T d1us3a2           1 AYSANVDHLRDLAPSDFPIGVAVSNTDSATYNLLTNSREQAVVKKHFNHLTAGNIMKMSYMQPTEGNFNFTNADAFVDWA   80 (364)
T ss_dssp             CCCCCCSCGGGGCSSSCCEEEEEBCTTCTTTBTTTCHHHHHHHHHHCSEEEESSTTSHHHHCSBTTBCCCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCEEEECCCCCHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             97564358999703689478885276555422246778999999768823165467768855889836838999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~gi~v~GH~lvW~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~vv~ry~~~G~I~~WDVvNEp~~~~~~~~~~~~~~~~  160 (364)
T d1us3a2          81 TENNMTVHGHALVWHSDYQVPNFMKNWAGSAEDFLAALDTHITTIVDHYEAKGNLVSWDVVNEAIDDNSPANFRTTDSAF  160 (364)
T ss_dssp             HHTTCEEEEEEEEECCGGGSCHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCBCSSSSCCBCCTTCHH
T ss_pred             HHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCHH
T ss_conf             98889899950687865578643235786579999999999999987524688357999860444578876556666437


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~g~~~~~i~~Af~~Ar~~~p~a~l~~ndy~~~~~~~~~~~~~~~v~~l~~~g~~idgiG~Q~H~~~~~p~~~~i~~~  240 (364)
T d1us3a2         161 YVKSGNSSVYIERAFQTARAADPAVILYYNDYNIEQNNAKTTKMVDMVKDFQARSIPIDGVGFQMHVCMNYPSIANISAA  240 (364)
T ss_dssp             HHHTTSCSHHHHHHHHHHHHHCTTSEEEEEESSTTSCSHHHHHHHHHHHHHHHTTCCCCEEEECCEEESSCSCHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHH
T ss_conf             77708833999999999998640343211565334663134678999999986899655532410025799998999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 l~~~~~~g~~I~iTEldi~~~~~~~~~~~~~~~~~~~~~~~~~QA~~~~~~~~~~~~~~~~~~~~~vt~Wg~~D~~sW~~  320 (364)
T d1us3a2         241 MKKVVDLGLLVKITELDVAVNQPHCDAYPANKINPLTEAAQLAQKKRYCDVVKAYLDTVPVNQRGGISVWGTTDANTWLD  320 (364)
T ss_dssp             HHHHHTTTCEEEEEEEEEESSCTTSTTTTTTCCCSCCHHHHHHHHHHHHHHHHHHHHHSCGGGEEEEEESCSBGGGCHHH
T ss_pred             HHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC
T ss_conf             99998549905887404741467665444444688875899999999999999998455623455699815874876556


Q ss_pred             -------------------------------------------C
Q ss_conf             -------------------------------------------9
Q 003496          278 -------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------~  278 (815)
                                                                 -
T Consensus       321 ~~~~~~~~~~~~~~~lL~d~d~~pKPAy~av~~~L~g~~~~~~~  364 (364)
T d1us3a2         321 GLYREQFEDEKISWPLLFDNNYNDKPALRGFADALIGTQCTNTH  364 (364)
T ss_dssp             HHTTTTTTTCCCCCCSSBCTTSCBCHHHHHHHHHHHTCCCCSCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf             87777666666687866889989988999999997799887889

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=0  Score=27417.94  Aligned_cols=1  Identities=0%  Similarity=-1.391  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~n~~~~~~~~~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g~e~~~~t~g~t~a~~~~~~   80 (364)
T d2e7ja1           1 DFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMH   80 (364)
T ss_dssp             CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf             97566841027968999999999984477510034666411135708999999999998695979997969999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 al~~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~  160 (364)
T d2e7ja1          81 SLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVK  160 (364)
T ss_dssp             HHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHH
T ss_pred             HHHCCCCEEEEECCCCCCCCHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEECCH
T ss_conf             98679967974046431110688851211798630356433257999976655410467716999605779984552311


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (364)
T d2e7ja1         161 KIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGC  240 (364)
T ss_dssp             HHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTC
T ss_pred             HHEECCCCCCCHHHCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             00000023321111144323444320133332213530331012788888999988799999985156657663333310


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (364)
T d2e7ja1         241 TARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRE  320 (364)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHTTCEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHH
T ss_conf             03235799999999988999999987777788999999975986457888876559983541477789753256677988


Q ss_pred             -------------------------------------------C
Q ss_conf             -------------------------------------------9
Q 003496          278 -------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------~  278 (815)
                                                                 +
T Consensus       321 l~~~~~~~~~~g~~~~~~~~~~~~t~edid~~~~~l~ei~~~ys  364 (364)
T d2e7ja1         321 LKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKYS  364 (364)
T ss_dssp             HHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHCCCCEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             87658713457876269980567999999999999999999759

>d1w0pa3 b.68.1.1 (A:217-346,A:544-777) Vibrio cholerae sialidase {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Sialidases
family: Sialidases (neuraminidases)
domain: Vibrio cholerae sialidase
species: Vibrio cholerae [TaxId: 666]

Probab=100.00  E-value=0  Score=27422.32  Aligned_cols=1  Identities=0%  Similarity=0.005  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~ripsl~~~~~~~g~~~a~~~~r~~~~~~~~~~~~~di~~~RS~DgGkTWs~~~~i~~~~~~~~~~~~~~p~~~   80 (364)
T d1w0pa3           1 VIFRGPDRIPSIVASSVTPGVVTAFAEKRVGGGDPGALSNTNDIITRTSRDGGITWDTELNLTEQINVSDEFDFSDPRPI   80 (364)
T ss_dssp             EEECTTCEEEEEEECSSSTTCEEEEEEEEETCSSTTCTTCEEEEEEEEESSSSSSCCCCEESSGGGCTTSCEEEEEEEEE
T ss_pred             CCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCEEE
T ss_conf             93468973547989807899899999623378998655896459999937897589998883158877786534577699


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~d~g~tw~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  160 (364)
T d1w0pa3          81 YDPSSNTVLVSYARWPTDAAQNGDRIKPWMPNGIFYSVYDVASGNWQAPIVNPGPGHGITLTRQQNISGSQNGRLIYPAI  160 (364)
T ss_dssp             EETTTTEEEEEEEEEETTCCSGGGCCCTTSCCEEEEEEEETTTTEECCCEEECCSSCCEECCCCTTSTTCCTTCEEEEEE
T ss_pred             EECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEE
T ss_conf             97999969999975178877566455355448579986579998512352146420003505797120351992999788


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~s~d~g~tw~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~l~~~~R~~~~~~~~~~~~~~~~~~  240 (364)
T d1w0pa3         161 VLDRFFLNVMSIYSDDGGSNWQTGSTLPIPFRWKSSSILETLEPSEADMVELQNGDLLLTARLDFNQIVNGVNYSPRQQF  240 (364)
T ss_dssp             EESSSCEEEEEEEESSSSSSCEECCCCCCCEEESSSSCEEECEEEEEEEEECTTSCEEEEEEEESCCEETTEECCSEEEE
T ss_pred             EECCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCEEEE
T ss_conf             50578885037885168857886455676665334544345788722699965865678998157865577688975999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~gR~~~~l~~S~D~G~TW~~~~~l  320 (364)
T d1w0pa3         241 LSKDGGITWSLLEANNANVFSNISTGTVDASITRFEQSDGSHFLLFTNPQGNPAGTNGRQNLGLWFSFDEGVTWKGPIQL  320 (364)
T ss_dssp             EESSSSSSCEEEEEEEGGGSTTCCSSCCCCEEEEEECTTSCEEEEEEEECTTTTTSSSSBSEEEEEESSTTSCCEEEEEC
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEE
T ss_conf             97589842235546753335776788632014776057896389996787876577860125999984799679997497


Q ss_pred             -------------------------------------------C
Q ss_conf             -------------------------------------------9
Q 003496          278 -------------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------------~  278 (815)
                                                                 +
T Consensus       321 ~~g~~~Ys~~~~~~~g~~~~~ye~~~~~i~~~~~~~~~l~~~~~  364 (364)
T d1w0pa3         321 VNGASAYSDIYQLDSENAIVIVETDNSNMRILRMPITLLKQKLT  364 (364)
T ss_dssp             CSSBCCSEEEEECSSSEEEEEEECGGGCEEEEEEEHHHHGGGTC
T ss_pred             CCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEEHHHHHCCCC
T ss_conf             28997787327928998999999499838999987999521059

>d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Nitric oxide (NO) synthase oxygenase domain
superfamily: Nitric oxide (NO) synthase oxygenase domain
family: Nitric oxide (NO) synthase oxygenase domain
domain: Nitric oxide (NO) synthase oxygenase domain
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=0  Score=27354.59  Aligned_cols=1  Identities=0%  Similarity=-1.290  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~s~~e~l~~eA~~Fi~~~y~e~~~~~~~~~Rl~ev~~eI~~tGtY~~T~eEL~~GAk~AWRNs~RCIGRl~W~~L~V~D~   80 (363)
T d1m7va_           1 GSHMEILWNEAKAFIAECYQELGKEEEVKDRLDSIKSEIDRTGSYVHTKEELEHGAKMAWRNSNRCIGRLFWNSLNVIDR   80 (363)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTCTTCSCGGGGGGCEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEC
T ss_conf             97678999999999999998648632489999999999974177438999998878998714552323002275725656


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 R~v~t~~~m~eal~~Hl~~AtN~G~Ir~~ITVF~p~~~~~~~~RIwN~QLirYAGY~~dg~iiGDP~~vefT~~c~~lGW  160 (363)
T d1m7va_          81 RDVRTKEDVRDALFHHIETATNNGKIRPSITIFPPEEKGEKQVEIWNHQLIRYAGYESDGERIGDPASRSLTAACEQLGW  160 (363)
T ss_dssp             TTCCSHHHHHHHHHHHHHHHHGGGSCCCEEEECCCCSSSCCSEEECCSBSSCBCEEC--CCCEECGGGHHHHHHHHTTTC
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             68999899999999999997079987623898078778999865644888866175889983689526899999997599


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~t~FDvLPlviq~~g~~~P~~feiP~~lvlEV~i~HP~~~~f~~LgLkWyavP~iS~M~L~iGGi~y~aaPFNGWYM  240 (363)
T d1m7va_         161 RGERTDFDLLPLIFRMRGDEQPVWYELPRSLVIEVPITHPDIEAFSDLELKWYGVPIISDMKLEVGGIHYNAAPFNGWYM  240 (363)
T ss_dssp             CCCCCTTCBCCEEEEETTCSSCEEECCCTTTCCEEECCCSSCGGGGGGCCEEESCCEECSCEEEETTEEESCCCEECCEE
T ss_pred             CCCCCCCCEEEEEEEECCCCCCEEECCCHHHEEEECCCCCCCHHHHHCCCCEEECHHHCCCHHHCCCEEECCCCCCCCEE
T ss_conf             99899888403899967999981331887783675157989755776698632032332240310888542456343422


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~TEIgaRnl~D~~RYn~L~~VA~~mGlDt~~~~sLWkDrAlvElN~AVLhSF~~~gVtivDHHtas~~F~~f~~~E~~~~  320 (363)
T d1m7va_         241 GTEIGARNLADEKRYDKLKKVASVIGISTNYNTDLWKDQALVELNKAVLYSYKKQGVSIVDHHTAASQFKRFEEQEEEAG  320 (363)
T ss_dssp             HHHHHTTTTTCTTTTCCHHHHHHHTTCCCSCGGGTHHHHHHHHHHHHHHHHHHHHTCCEECHHHHHHHHHHHHHHHHHTT
T ss_pred             EHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHC
T ss_conf             00230244555777774799999948888997215778899999999999999879647052788999999999999818


Q ss_pred             ------------------------------------------C
Q ss_conf             ------------------------------------------9
Q 003496          278 ------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------~  278 (815)
                                                                .
T Consensus       321 r~~~gdW~WlvPP~S~s~tpvfH~~~~~~~~~Pnf~yq~~pw~  363 (363)
T d1m7va_         321 RKLTGDWTWLIPPISPAATHIFHRSYDNSIVKPNYFYQDKPYE  363 (363)
T ss_dssp             CCCBCCHHHHSCSSSGGGSGGGGSCCBCCCCSSEEECCCCTTC
T ss_pred             CCCCCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             9999984377788864344277776544445887502788899

>d1zaia1 c.1.10.1 (A:1-363) Fructose-1,6-bisphosphate aldolase {Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Fructose-1,6-bisphosphate aldolase
species: Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId: 9986]

Probab=100.00  E-value=0  Score=27351.07  Aligned_cols=1  Identities=0%  Similarity=-1.392  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~e~~~eL~~~a~~~~~~GKGilAADeS~gT~~Krl~~igventeenr~~yR~~lftsp~f~~~~IsGvILfe   80 (363)
T d1zaia1           1 PHSHPALTPEQKKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIGGVILFH   80 (363)
T ss_dssp             CCCCCSSCHHHHHHHHHHHHHHTCTTCEEEEECCCHHHHHHHHHTTTCCCCHHHHHHHHHHHHTCCGGGTTTEEEEEECH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHCCEEEEECCH
T ss_conf             99877689999999999999980589869982689983777898769999778999999987148512205446897648


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 eTl~q~~~~g~~~~~ll~~kGIvPgIKVDkGl~~l~~~~ge~~t~gLd~L~~rl~~y~~~Ga~faKwRsVi~i~~~~ps~  160 (363)
T d1zaia1          81 ETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQYKKDGADFAKWRCVLKIGEHTPSA  160 (363)
T ss_dssp             HHHTCBCTTSCBHHHHHHHTTCEEEEECCCCEEECTTSSSCEEECCCTTHHHHHHHHHHTTCCEEEEEEEECCSSSCSCH
T ss_pred             HHHHHHCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCC
T ss_conf             87511225998622566515854467347653336788644135662239999999986686513112102235677740


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~I~~na~~laryA~i~q~~GLVPIVEPEVlidg~h~~e~~~~vt~~vl~~v~~~l~~~~V~leg~lLKpnMv~~g~~~~  240 (363)
T d1zaia1         161 LAIMENANVLARYASICQQNGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACT  240 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEECCCCCCCCTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             24899899999999999865842002353442476315788999999999999876412323467501355666754355


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~va~~Tv~~l~~~vp~~VpgIvfLSGGqS~eeAt~~LnamNk~~~~~pW~lsfSfgRALQ~~~lk~W~g~~~n~  320 (363)
T d1zaia1         241 QKYSHEEIAMATVTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENL  320 (363)
T ss_dssp             SCCCHHHHHHHHHHHHHTTSCTTSCEEEECCTTCCHHHHHHHHHHHHHCSSCCCSEEEEEESHHHHHHHHHHHTTCGGGH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCH
T ss_conf             54886675566555654058977772110578765889999999986036899976999751766489999847882258


Q ss_pred             ------------------------------------------C
Q ss_conf             ------------------------------------------9
Q 003496          278 ------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------~  278 (815)
                                                                .
T Consensus       321 ~aaQ~~~~~ra~~Ns~A~~G~y~~~~e~~~~~~~~l~v~~~~y  363 (363)
T d1zaia1         321 KAAQEEYVKRALANSLACQGKYTPSGQAGAAASESLFISNHAY  363 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCCCSSSCCCCCCCCCCSCCGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9999999999985468765850787776754455520067659

>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=27349.59  Aligned_cols=1  Identities=0%  Similarity=0.203  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      =                                                                               
T Consensus         1 WLAEHMlIlgvt~P~g~~~yvaaAFPSaCGKTnlAMl~p~~pGwkv~~vGDDiawi~~~~dG~l~AiNPE~G~FGVapgt   80 (363)
T d1khba1           1 WLAEHMLVLGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVGDDIAWMKFDAQGHLRAINPENGFFGVAPGT   80 (363)
T ss_dssp             CEEESCEEEEEECTTSCEEEEEEECCTTSCHHHHHTCCCCSTTCEEEEEESSCEEEEECTTSBEEEECCCSEEEEECTTC
T ss_pred             CHHHHHHHHEECCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCEEEECCCCCCCCCCCCC
T ss_conf             92352343032489997799987567443421088718899996778941746777787889678536655753447898


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~tnp~am~~l~~~~IFTNValt~DG~vwWeG~~~~~~~~~~~~~w~g~~~~~~~~~paaHpNsRFt~p~~qcp~id~~  160 (363)
T d1khba1          81 SVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPLASGVTITSWKNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAA  160 (363)
T ss_dssp             CTTTCHHHHHHTTBSCEEESCEEETTSCEECTTCCCCCCTTCCEECTTSSEECTTSSSCSSCTTCEEEEEGGGCTTBCTT
T ss_pred             CCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
T ss_conf             98889999997536852443567789974678898889877524678899888888997778875202137669866843


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 wedP~GVpIsaiiFGGRr~~t~PlV~ea~~W~hGV~~GAtm~SE~TAAa~g~~g~vrrdPmAMlpF~gyn~gdY~~hWL~  240 (363)
T d1khba1         161 WESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFGKYLAHWLS  240 (363)
T ss_dssp             TTCTTCEEEEEEEEECCCSSSCCSEEECSSHHHHHHHHHTCEEEC--------CCEEECGGGCTTTCSSCHHHHHHHHHH
T ss_pred             CCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCEEEEEEEECHHHHHHHHCCCCCEECCCHHHHHHCCCCHHHHHHHHHH
T ss_conf             35987514778997565688887248731466607873210104567764146864318066543328898999999876


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~g~~~~~k~PkIF~VNWFrKd~~GkFLWPGfGeN~RVLkWI~~Rv~G~~~A~eTPIG~vP~~~dLd~~GL~~~~~~el~~  320 (363)
T d1khba1         241 MAQHPAAKLPKIFHVNWFRKDKEGKFLWPGFGENSRVLEWMFNRIDGKASTKLTPIGYIPKEDALNLKGLGHINMMELFS  320 (363)
T ss_dssp             GGGSTTCBCCEEEEECSCCBCTTSCBSSCCGGGGHHHHHHHHHHHTC--CEEEETTEEEECTTCSCCTTCCCCCHHHHTC
T ss_pred             HHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHC
T ss_conf             51246567984799976534588886578863156999999998649755201676312683446866788666999838


Q ss_pred             ------------------------------------------C
Q ss_conf             ------------------------------------------9
Q 003496          278 ------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------~  278 (815)
                                                                -
T Consensus       321 vd~~~w~~E~~~i~~~f~~~~g~~LP~el~~eL~~Lk~RL~~m  363 (363)
T d1khba1         321 ISKEFWDKEVEDIEKYLVDQVNADLPCEIEREILALKQRISQM  363 (363)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             7999999999999999998733305099999999999999649

>d1zq1a2 c.88.1.1 (A:76-438) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: Glutaminase/Asparaginase
superfamily: Glutaminase/Asparaginase
family: Glutaminase/Asparaginase
domain: Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD
species: Pyrococcus abyssi [TaxId: 29292]

Probab=100.00  E-value=0  Score=27347.40  Aligned_cols=1  Identities=0%  Similarity=-1.589  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~lPkI~ii~TGGTIa~~~~~~~~~~~p~~~~~~l~~~~p~~~~~~~~~~~~~~~~dS~~~~~~~~~   80 (363)
T d1zq1a2           1 KPEVHFEALIEGKPGLPEVTIIGTGGTIASRIDYETGAVYPAFTAEELAKALPEIFEVANVKPKLLFNIFSEDMKPKHWV   80 (363)
T ss_dssp             CCCCCCCSSCCCCTTCCEEEEEECSCCCCEEEETTTTEEEECCCHHHHHHHCGGGGGTSEEEEEECCCCCGGGCCHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHCCEEEEEEECCCCCHHCCHHHHH
T ss_conf             98644345688999999799997787314046687783378799999998575455125267999633896247999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~l~~~i~~~~~~~d~G~VvtHGTDTl~eTA~~L~~~l~~~~kPVVlTGa~~P~~~~~sDg~~NL~~Al~~A~~~~~~v~v  160 (363)
T d1zq1a2          81 KIAHEVAKALNSGDYGVVVAHGTDTMGYTAAALSFMLRNLGKPVVLVGAQRSSDRPSSDAAMNLICSVRMATSEVAEVMV  160 (363)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCSSSHHHHHHHHHHHEESCCSCEEEECCSSCTTSTTCSHHHHHHHHHHHHTSSBCSEEE
T ss_pred             HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf             99999998632777737983587739999999999724899638996334135677751077899999998565666326


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~i~~a~~v~K~~t~~~~aF~sp~~~pLg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~il~~~pG  240 (363)
T d1zq1a2         161 VMHGETGDTYCLAHRGTKVRKMHTSRRDAFRSINDVPIAKIWPNGEIEFLRKDYRKRSDEEVEVDDKIEEKVALVKVYPG  240 (363)
T ss_dssp             EEESSSSSSCEEEEETTSEEECBSSCSTTEEECSSCCSEEECTTSCEEESCSCCCBCCCCCCEECCCCCCCEEEEECCTT
T ss_pred             EEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf             75200143145532131012345655444468776744899738879862454468887534554245785799993699


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~l~~~~~~g~~GiVl~g~G~Gnvp~~~~~~l~~a~~~gi~VV~~Sqc~~G~v~~~~Y~~g~~l~~~GvI~~gdlt~  320 (363)
T d1zq1a2         241 ISSEIIDFLVDKGYKGIVIEGTGLGHTPNDIIPSIERAVEEGVAVCMTSQCIYGRVNLNVYSTGRKLLKAGVIPCEDMLP  320 (363)
T ss_dssp             CCTHHHHHHHHTTCSEEEEEEBTTTBCCGGGHHHHHHHHHTTCEEEEEESSSBSCCCCSSSHHHHHHHHTTCEECTTCCH
T ss_pred             CCHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHCCEEECCCCCH
T ss_conf             99999999985798369998555888856788999999747926999368787885777654437788699898899899


Q ss_pred             ------------------------------------------C
Q ss_conf             ------------------------------------------9
Q 003496          278 ------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------~  278 (815)
                                                                .
T Consensus       321 ekArikLm~lL~~~~~~~eI~~~f~~nl~GE~t~~~~~~~~~~  363 (363)
T d1zq1a2         321 ETAYVKLMWVLGHTQNLEEVRKMMLTNYAGEITPYTRFDTYLR  363 (363)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHSCSSTTSCSSCBTTCSCC
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             9999999999859999999999971366853688766666569

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=0  Score=27345.38  Aligned_cols=1  Identities=0%  Similarity=-1.257  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   80 (363)
T d2c5aa1           1 TYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGV   80 (363)
T ss_dssp             CCTTCCCCCSCTTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTC
T ss_pred             CHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCCEEEEECHHHHHHHHHHHCC
T ss_conf             92231356737878987999788878999999999978298999968985211342356727993515589899876148


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 d~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~  160 (363)
T d2c5aa1          81 DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQD  160 (363)
T ss_dssp             SEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSS
T ss_pred             CEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             76731023322222222222222222221246777767751752202446654235554456554554346677689888


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~~  240 (363)
T d2c5aa1         161 AFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECV  240 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHH
T ss_conf             78999999999999999984997899982157616876432222221100000113345543438998578874002778


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~~~~~~~~~~~~~d~ska~~~LGw~p~~sleegi~~t  320 (363)
T d2c5aa1         241 EGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRIT  320 (363)
T ss_dssp             HHHHHHHHSSCCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCCCCCSBCEECCHHHHHHHSCCCCCCHHHHHHHH
T ss_pred             HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             99999985788882797168765389999999998689875476899998641455889999986999788999999999


Q ss_pred             ------------------------------------------C
Q ss_conf             ------------------------------------------9
Q 003496          278 ------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------~  278 (815)
                                                                .
T Consensus       321 i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (363)
T d2c5aa1         321 YFWIKEQIEKEKAKGSDVSLYGSSKVVGTQAPVQLGSLRAADG  363 (363)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGGGSCCCCCCCCCCCTTCCCCSCC
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
T ss_conf             9999998876541454432145331110105312476233789

>d1onha_ e.3.1.1 (A:) AMPC beta-Lactamase, class C {Enterobacter cloacae, P99, cephalosporinase [TaxId: 550]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: AMPC beta-Lactamase, class C
species: Enterobacter cloacae, P99, cephalosporinase [TaxId: 550]

Probab=100.00  E-value=0  Score=27345.08  Aligned_cols=1  Identities=0%  Similarity=-1.524  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      =                                                                               
T Consensus         1 p~~~~~l~~~v~~~i~~~~~~~~~pG~~v~V~~~g~~~~~~~G~~~~~~~~p~~~dT~f~iaSitK~~ta~~i~~L~e~G   80 (363)
T d1onha_           1 PVSEKQLAEVVANTVTPLMKAQSVPGMAVAVIYQGKPHYYTFGKADIAANKPVTPQTLFELGSISKTFTGVLGGDAIARG   80 (363)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHTTCSEEEEEEEETTEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCC
T ss_conf             98979999999999999998389986999999999999995876006779889999978720559999999999998669


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~l~lddpv~~ylp~~~~~~~~~ITi~~LL~HtSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~~~llg~i  160 (363)
T d1onha_          81 EISLDDPVTRYWPQLTGKQWQGIRMLDLATYTAGGLPLQVPDEVTDNASLLRFYQNWQPQWKPGTTRLYANASIGLFGAL  160 (363)
T ss_dssp             SCCTTSBGGGTCTTCCCGGGTTCBHHHHHHTCSSCCCSSCCTTCCSHHHHHHHHHHCCCSSCTTSEECCCHHHHHHHHHH
T ss_pred             CCEEEECCCHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEHHHHH
T ss_conf             62242021011100244434555065676530467544586455788999999987554148740231256410013555


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ie~~tg~~~~~~~~e~i~~PLgm~~t~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~aggl~st~~Dla~~~~~~l  240 (363)
T d1onha_         161 AVKPSGMPYEQAMTTRVLKPLKLDHTWINVPKAEEAHYAWGYRDGKAVRAVRVSPGMLDAQAYGVKTNVQDMANWVMANM  240 (363)
T ss_dssp             HTGGGTSCHHHHHHHHTTTTTTCTTEESSCCGGGGGGBCCEEETTEEECCCCCCSSTTHHHHHCCEECHHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCEEECHHHHHHHHHHHH
T ss_conf             56404997004457888861696421446870014652136665974541011024445656614417999999999860


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~G~  320 (363)
T d1onha_         241 APENVADASLKQGIALAQSRYWRIGSMYQGLGWEMLNWPVEANTVVEGSDSKVALAPLPVAEVNPPAPPVKASWVHKTGS  320 (363)
T ss_dssp             CGGGCCSHHHHHHHHHHTSEEEEETTEEECSSCEEEESSCCHHHHHHHHSHHHHTSCEECEEEEEEECCCSSEEEEEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHCEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf             68877716788888775321045787566655020366655554445777542113444445677777778747972365


Q ss_pred             ------------------------------------------C
Q ss_conf             ------------------------------------------9
Q 003496          278 ------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------~  278 (815)
                                                                .
T Consensus       321 ~~G~~s~~~~~P~~~~~ivvl~N~~~~~~~~~~~a~~i~~al~  363 (363)
T d1onha_         321 TGGFGSYVAFIPEKQIGIVMLANTSYPNPARVEAAYHILEALQ  363 (363)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEEESBCCCHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             7875299999977997999997489998899999999999639

>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Pentaerythritol tetranirate reductase
species: Enterobacter cloacae [TaxId: 550]

Probab=100.00  E-value=0  Score=27344.77  Aligned_cols=1  Identities=0%  Similarity=0.769  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~e~LF~P~~ig~~~lkNRiv~apm~~~~a~~~g~~~~~~~~~yy~~ra~~Glii~e~~~V~~~~~~~~~~~~l~~d~~i~   80 (363)
T d1vyra_           1 AEKLFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIA   80 (363)
T ss_dssp             CCSTTSCEEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHHTTTSSEEEEEEEESSSTTCCSTTCCBSSSHHHHH
T ss_pred             CCCCCCCCCCCCEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHCC
T ss_conf             95047983689989788738763468767798998989999999997086979981268885335799987437735503


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~k~l~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~  160 (363)
T d1vyra_          81 AWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVN  160 (363)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECCTTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGGGHHHHHH
T ss_pred             CCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             20033445652697046644126765454436787630101223555555344766664557877764566777999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~f~~AA~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~  240 (363)
T d1vyra_         161 DFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQ  240 (363)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBT
T ss_pred             HHHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCC
T ss_conf             99999999997513403451467103111446766566654464033444767888765553047887412311323311


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~~~~~~~~~~~~~~~~~~~~~~~vi~~G~~t~~~ae~~l~~G~~DlV~  320 (363)
T d1vyra_         241 NVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVA  320 (363)
T ss_dssp             TBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEE
T ss_pred             CHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCCCEEH
T ss_conf             10001330688999999877429806620347766786532888999898658539966899999999999879965115


Q ss_pred             ------------------------------------------C
Q ss_conf             ------------------------------------------9
Q 003496          278 ------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------~  278 (815)
                                                                .
T Consensus       321 ~gR~liadP~~~~K~~~g~~~~~~~~~~~~~~~~~~y~~y~~~  363 (363)
T d1vyra_         321 FGRDYIANPDLVARLQKKAELNPQRPESFYGGGAEGYTDYPSL  363 (363)
T ss_dssp             ESHHHHHCTTHHHHHHHTCCCCCCCGGGSSSSSSTTTTCSCCC
T ss_pred             HHHHHHHCCCHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCC
T ss_conf             5499987921999998389999998754237999985789898

>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Hypothetical protein YteR
domain: Hypothetical protein YteR
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=0  Score=27344.66  Aligned_cols=1  Identities=0%  Similarity=-1.489  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~W~W~~G~~~~gl~~lye~Tgd~~y~~~a~~~~~~~~~~~g~~~~~~~~~d~~   80 (363)
T d1nc5a_           1 KSPLTYAEALANTIMNTYTVEELPPANRWHYHQGVFLCGVLRLWEATGEKRYFEYAKAYADLLIDDNGNLLFRRDELDAI   80 (363)
T ss_dssp             CCHHHHHHHHHHHHHHHCCTTTSSSTTCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHBCTTCCBCCCTTCGGGT
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf             97579999999999973665348999982775649999999999883999999999999999844478745778987415


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~l~~ly~~Tgd~~y~~~a~~~~~~l~~~~~~~~g~~~~~~~~~~~~wiD~l~M~~p~l~~~~~~tgd~~y~d~a~~  160 (363)
T d1nc5a_          81 QAGLILFPLYEQTKDERYVKAAKRLRSLYGTLNRTSEGGFWHKDGYPYQMWLDGLYMGGPFALKYANLKQETELFDQVVL  160 (363)
T ss_dssp             GGGGGHHHHHHHHCCHHHHHHHHHHHGGGGTSCBCTTSCBCSCTTSTTEEETHHHHHHHHHHHHHHHHHTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             88999999998728688999999999862137878878631367887773642067748999999998698789999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~l~d~~~gL~~h~~~~~~~~~~~~~~~~~~~~~WsRGngW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~~~~~  240 (363)
T d1nc5a_         161 QESLMRKHTKDAKTGLFYHAWDEAKKMPWANEETGCSPEFWARSIGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSI  240 (363)
T ss_dssp             HHHHHHHHHBCTTTSCBCSEEETTCCSTTSCTTTCBCSCCBHHHHHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999997515889986525455676677788888786501100019999879999867777800999999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~q~~d~G~w~~~~d~p~~~~~~~etSata~~~y~l~~g~~~g~l~~~y~~~~~ka~~~l~~~~~~~~~~g~~~v~~~~  320 (363)
T d1nc5a_         241 CRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKGYLDRAYETTLLKAYQGLIQHKTETSEDGAFLVKDIC  320 (363)
T ss_dssp             HTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHHHHHEEECTTSCEEECCEE
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf             84558878662310567777898633589999999999998758444999999999999999987403899874650357


Q ss_pred             ------------------------------------------C
Q ss_conf             ------------------------------------------9
Q 003496          278 ------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------~  278 (815)
                                                                .
T Consensus       321 ~g~~~~~~~~y~~~~~~~~~~~G~g~fllA~~e~~~l~~~~~~  363 (363)
T d1nc5a_         321 VGTSAGFYDYYVSRERSTNDLHGAGAFILAMTELEPLFRSAGK  363 (363)
T ss_dssp             CSCCSCCHHHHHTSCEESSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             7899998200126787578757799999999999999984289

>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: 3-isopropylmalate dehydrogenase, IPMDH
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=0  Score=27344.05  Aligned_cols=1  Identities=100%  Similarity=0.834  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 M~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~t~e~i~~~dail~Gaig~P~   80 (363)
T d1cnza_           1 MSKNYHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPK   80 (363)
T ss_dssp             CCCCEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGG
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEECHHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCCCC
T ss_conf             99986699989888559999999999999866619706999996428799974996889999999850413772257878


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~g~~~~~~~~~~~~~~~iD~vivREnteg~Y~g~~~~~~~~~~~~~  160 (363)
T d1cnza_          81 WENLPPESQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK  160 (363)
T ss_dssp             GTTSCGGGSTTHHHHHHHHHHHTCCEEEEEEECCTTCGGGCSBCHHHHHHCCEEEEEEECSSGGGTCSSCEEECCGGGCE
T ss_pred             CCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEECCCCCCEE
T ss_conf             65543456644006799999738825777776125655323576554679842899874135433576531316885203


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~t~~~~~ri~r~Af~~A~~r~~kVt~v~KaNv~k~~~lf~~~~~eva~~yp~I~~~~~~vD~~~~~lv~~P~~f  240 (363)
T d1cnza_         161 AFDTEVYHRFEIERIARIAFESARKRRRKVTSIDKANVLQSSILWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQF  240 (363)
T ss_dssp             EEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGC
T ss_pred             ECCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCC
T ss_conf             32237764899999999999999966995689813753304487899999986228874975176658999986455777


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 dViv~~Nl~GDIlSDl~a~l~GglG~~~s~ni~~~~~a~fEp~HGsapdiaGk~~aNP~a~Ils~ammL~~~lg~~~~A~  320 (363)
T d1cnza_         241 DVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDANDAAT  320 (363)
T ss_dssp             SEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTSCEEEEESSCCCGGGTTTTCSCCHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CEEEEHHHHHHHHHHHHHHHHCCCCCCHHEEEECCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             66642357777678899887504542111034036407851677765334798864909999999999984189879999


Q ss_pred             ------------------------------------------C
Q ss_conf             ------------------------------------------9
Q 003496          278 ------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------~  278 (815)
                                                                -
T Consensus       321 ~i~~Av~~~l~~g~~T~Dl~~~~~~~~T~e~~dai~~~l~~~~  363 (363)
T d1cnza_         321 AIEQAINRALEEGVRTGDLARGAAAVSTDEMGDIIARYVAEGV  363 (363)
T ss_dssp             HHHHHHHHHHHTTCCCGGGTTTTTCCCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             9999999999769967564689974899999999999987019

>d1kwfa_ a.102.1.2 (A:) CelA cellulase {Clostridium thermocellum [TaxId: 1515]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: CelA cellulase
species: Clostridium thermocellum [TaxId: 1515]

Probab=100.00  E-value=0  Score=27341.60  Aligned_cols=1  Identities=0%  Similarity=0.769  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~p~~~~~~~~~~~~~~~qa~~~~~~~~~w~~~k~~~~~~~~~~~~~rv~d~~~~~~~t~SEGQgYGMl~Av~~~d~~~   80 (363)
T d1kwfa_           1 AGVPFNTKYPYGPTSIADNQSEVTAMLKAEWEDWKSKRITSNGAGGYKRVQRDASTNYDTVSQGMGYGLLLAVCFNEQAL   80 (363)
T ss_dssp             CCSSCCCCCSSSCSCSSSCHHHHHHHHHHHHHHHHHHHEECTTSTTSCEECCCGGGTTCEEHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHH
T ss_conf             99887788888766778757899999999999999998066798872488717988987312789999999998499999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 Fd~l~~wt~~~l~~~~L~aW~~~~~~~~~~~~~d~n~AtDgDl~iA~ALl~A~~~Wg~~~~~~Y~~~A~~ii~~i~~~~v  160 (363)
T d1kwfa_          81 FDDLYRYVKSHFNGNGLMHWHIDANNNVTSHDGGDGAATDADEDIALALIFADKLWGSSGAINYGQEARTLINNLYNHCV  160 (363)
T ss_dssp             HHHHHHHHHTTBCTTSSBCSEECTTSCBCTTTTTTSCBHHHHHHHHHHHHHHHHHHCSSSSSCHHHHHHHHHHHHHHHHB
T ss_pred             HHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999974566888536778999877677888989768999999999999774874088999999999999998510


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~l~pg~~~~~~~~~npSY~~p~~~~~fa~~~~~~~W~~v~~~s~~ll~~~~~~~~~tGL~pDw~~~~~~p~~~~~  240 (363)
T d1kwfa_         161 EHGSYVLKPGDRWGGSSVTNPSYFAPAWYKVYAQYTGDTRWNQVADKCYQIVEEVKKYNNGTGLVPDWCTASGTPASGQS  240 (363)
T ss_dssp             CTTTCCBCSBSSSCBTTBBCGGGCCHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHTTTSTTSCCCCSSBCTTSSCCTTSC
T ss_pred             CCCCCEECCCCCCCCCCEECHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             78984553676568988558032359999999963687338999999999999976405888888400046888588898


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~ydA~Rvp~~ia~d~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~G~~~~~~~~~~f~A~~~~~~~~~~~~~~  320 (363)
T d1kwfa_         241 YDYKYDATRYGWRTAVDYSWFGDQRAKANCDMLTKFFARDGAKGIVDGYTIQGSKISNNHNASFIGPVAAASMTGYDLNF  320 (363)
T ss_dssp             CSBSTTGGGHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCGGGCCSCBCTTSCBCCCCCCTTTHHHHHHHHTTSSCHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHH
T ss_conf             87565599999999998750157145899999999998459888750481698446888979899999999873588589


Q ss_pred             ------------------------------------------C
Q ss_conf             ------------------------------------------9
Q 003496          278 ------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------~  278 (815)
                                                                -
T Consensus       321 ~~~~~~~~~~~~~~~~~~YY~~~L~Ll~ll~~sG~~~~p~~~~  363 (363)
T d1kwfa_         321 AKELYRETVAVKDSEYYGYYGNSLRLLTLLYITGNFPNPLSDL  363 (363)
T ss_dssp             HHHHHHHHHHCCCCGGGTTHHHHHHHHHHHHHTTCCCCTTSCC
T ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             9999987522467777887899999999999749989887679

>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=0  Score=27340.17  Aligned_cols=1  Identities=100%  Similarity=1.167  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~d~m~~~~~~~~~W~ng~ivp~~~~~isp~~~~l~YG~gvFEgiR~y~   80 (363)
T d2a1ha1           1 SSFKAADLQLEMTQKPHKKPGPGEPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFK   80 (363)
T ss_dssp             CCCCGGGCEECCCSSCCCCCCTTSCCCTTCSCCSEEEEEEEETTEECCCEEEESCCEEECTTBHHHHSCCEEECCEEEEE
T ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEECCEEEECCCCEECCCHHHCCCCCEEEEEEEEEE
T ss_conf             97542115999767998898972237777755651799992288300887868412610720111304424353689998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~g~i~lFrld~Hl~RL~~Sa~~l~~~~~~~~~~~~~i~~~v~~n~~~v~~~~~~~~yiR~~v~~~~~~~~~~~~~~~~  160 (363)
T d2a1ha1          81 GKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRAL  160 (363)
T ss_dssp             CTTSCEEEESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCSTTCEEEEEEEEEECCBCCSCSCCSEEE
T ss_pred             CCCCCEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCC
T ss_conf             79997899735788777888889757999876899999999998777526654465379997622677644566776662


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~k~~~ny~~~~la~~eA~~~G~de~l~L~~~dg~v~E~~~sN  240 (363)
T d2a1ha1         161 LFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMN  240 (363)
T ss_dssp             EEEEEEEECCSSSSSSCCCEEEEECTTCCSCCTTSSTTSCBGGGTTTHHHHHHHHHHTTCSEEEEEETTTTEEEEETTEE
T ss_pred             EEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCEEEECCCEE
T ss_conf             14897603456750013644689751011467545534214556422226888761489501100013451489616607


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 iF~v~~~kdG~~~l~tppl~~~ILpGITR~~Viela~~~g~i~V~Er~i~~~eL~~A~~~~~~dEvF~tgTa~~I~PV~~  320 (363)
T d2a1ha1         241 IFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHR  320 (363)
T ss_dssp             EEEEEECTTSCEEEEECCCSSSSCCCHHHHHHHHHHHHHTSSEEEECCCBHHHHHHHHHTTCEEEEEEEETTTEEEEEEE
T ss_pred             EEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHCCCCCEEEECCCCCEEEEEEE
T ss_conf             99998358885799723654334674489999999997399820664779999996765599618998478858999999


Q ss_pred             ------------------------------------------C
Q ss_conf             ------------------------------------------9
Q 003496          278 ------------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------------~  278 (815)
                                                                -
T Consensus       321 I~~~~~~~~i~~g~~g~~it~~L~~~l~~iq~G~~~~~W~~~v  363 (363)
T d2a1ha1         321 ILYKDRNLHIPTMENGPELILRFQKELKEIQYGIRAHEWMFPV  363 (363)
T ss_dssp             EEETTEEEECTTGGGTTHHHHHHHHHHHHHHTTSSCCTTEEEC
T ss_pred             EEECCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEC
T ss_conf             9867964893899808899999999999976788899973579

>d1umga_ d.280.1.1 (A:) ST0318 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: Sulfolobus fructose-1,6-bisphosphatase-like
superfamily: Sulfolobus fructose-1,6-bisphosphatase-like
family: Sulfolobus fructose-1,6-bisphosphatase-like
domain: ST0318
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=100.00  E-value=0  Score=27279.09  Aligned_cols=1  Identities=0%  Similarity=-1.489  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 k~TvSvIKADVGg~~GHt~~hp~ll~~a~~~l~~a~~~glliD~~v~~~GDDi~limTH~~G~d~~eiH~lAW~aF~~~t   80 (362)
T d1umga_           1 KTTISVIKADIGSLAGHHIVHPDTMAAANKVLASAKEQGIILDYYITHVGDDLQLIMTHTRGELDTKVHETAWNAFKEAA   80 (362)
T ss_dssp             CEEEEEEEECCCBBTTTTBCCHHHHHHHHHHHHHHHHTTSCSEEEEEEETTEEEEEEEESSCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf             94699997236787777768989999999999861138868877667643742578754689894899999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~vAK~l~LYGAGQDLL~DaFSGNvkGmGPgvAEmEf~ERpsEp~~vF~aDKTePGAfNlPlY~~FaDPfnt~GLvidp~m  160 (362)
T d1umga_          81 KVAKDLGLYAAGQDLLSDSFSGNVRGLGPGVAEMEIEERASEPIAIFMADKTEPGAYNLPLYKMFADPFNTPGLVIDPTM  160 (362)
T ss_dssp             HHHHHTTCBTTTTTTCTTSSSSSCCCCCCEEEEEEECCCSSCEEEEEEEESBCGGGGHHHHHHHHHCTTTCTHHHHCGGG
T ss_pred             HHHHHHCCCCCCCHHHCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEECCCC
T ss_conf             99887256556621211346765257787437887225789857999853888760120689984284578750317101


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 h~Gf~FeV~Dv~~~k~i~l~~Pee~Ydllalig~~~RyvI~~V~~k~~~eiaav~St~RL~~iAG~YvGKDDPV~iVR~Q  240 (362)
T d1umga_         161 HGGFKFEVLDVYQGEAVMLSAPQEIYDLLALIGTPARYVIRRVYRNEDNLLAAVVSIERLNLIAGKYVGKDDPVMIVRLQ  240 (362)
T ss_dssp             TTCEEEEEEETTTTEEEEEETTTTHHHHHHHHTSTTTEEEEEEEETTTCCEEEEECCCCCBCC---CBCCCSCEEEEECS
T ss_pred             CCCEEEEEEEECCCEEEEECCCHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEHHHHHHHHCEECCCCCCEEEEEEC
T ss_conf             36705899970257178851806877899983898735899998668997789976678776406120688866999846


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~gfPA~gEvlepFa~phlVaGwmRGSH~gPlMPV~~~da~~trFdgpPrV~alGFql~~GkL~GP~DlFddpafD~~R~~  320 (362)
T d1umga_         241 HGLPALGEALEAFAFPHLVPGWMRGSHYGPLMPVSQRDAKATRFDGPPRLLGLGFNVKNGRLVGPTDLFDDPAFDETRRL  320 (362)
T ss_dssp             SSSCCHHHHHHTTSSCCEEEETGGGCEEEECEEECSTTCSCCGGGCSCEEEEEEEEEETTEEEEEEESSCSGGGHHHHHH
T ss_pred             CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEECCCCCCCCCCCHHHHHHH
T ss_conf             88996465542244652114434566678743201456887567899768888888627887376324577430689999


Q ss_pred             -----------------------------------------C
Q ss_conf             -----------------------------------------9
Q 003496          278 -----------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------~  278 (815)
                                                               .
T Consensus       321 a~~~A~~mR~~Gpf~PhrLp~~emEYttlp~vl~kL~~rf~~  362 (362)
T d1umga_         321 ANIVADYMRRHGPFMPHRLEPTEMEYTTLPLILEKLKDRFKK  362 (362)
T ss_dssp             HHHHHHHHHTTTTCTTTBCCGGGCSSCCHHHHHHHTTTTCCC
T ss_pred             HHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHCC
T ss_conf             999999998549987655897880211388999999887519

>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=27276.09  Aligned_cols=1  Identities=0%  Similarity=0.238  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~l~~~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~eL   80 (362)
T d1gqea_           1 INPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGL   80 (362)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             91689999999999999997769798999999999986397144499999999999999999999999999999988877


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~Ela~ee~deel~~e~~~~l~~l~~~l~~le~~ll~~~~~D~~nailEIrAGaGG~EA~dfA~~L~RMY~r~ae~~gwk~  160 (362)
T d1gqea_          81 LELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKT  160 (362)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHGGGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             87764110588888899999998622467787521367545454379998257606688999999999999999759858


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 eiid~~~~e~gG~K~v~~~I~G~~ayg~Lk~EsGvHRvqRvp~~es~gr~hTS~a~V~v~P~~~~~~~~~i~~~dl~i~~  240 (362)
T d1gqea_         161 EIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDV  240 (362)
T ss_dssp             EEEEEEECSSSSEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEE
T ss_pred             EEECCCCCCCCCEEEEEEEEECCCHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCCEECCHHHEEEEE
T ss_conf             99414567766546999999776688999872375048884046777347998778899624787631111767827997


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~rs~g~GGQ~vN~t~savri~H~ptgi~v~~q~ersq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~i  320 (362)
T d1gqea_         241 YRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGWGSQI  320 (362)
T ss_dssp             ECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCCCCSCSEE
T ss_pred             EECCCCCCCCHHHHHCEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             52699886512033141688744733677764221014789999999999999999999999999887423127576984


Q ss_pred             -----------------------------------------C
Q ss_conf             -----------------------------------------9
Q 003496          278 -----------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------~  278 (815)
                                                               -
T Consensus       321 RtY~~~~~rv~DhR~~~~~~~~~~vl~G~ld~~i~a~l~~~~  362 (362)
T d1gqea_         321 RSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKAGL  362 (362)
T ss_dssp             EEEEGGGTEEEETTTCCEESCHHHHHTTCCHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCEECCHHHHHCCCHHHHHHHHHHCCC
T ss_conf             676589981500053972578468758877999999987779

>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=0  Score=27273.32  Aligned_cols=1  Identities=0%  Similarity=0.171  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~r~l~~~g~~~~~~~~~ls~e~l~~~yr~M~~~R~~ee~~~~l~~~g~~~~~~~~~GqEA~~vg~~~al~   80 (362)
T d1umda_           1 HRFETFTEEPIRLIGEEGEWLGDFPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIR   80 (362)
T ss_dssp             CCCCSSCSSCBCCBCTTSCBCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCC
T ss_conf             99877886764777899989987899979999999999999999999999999977996022278978999999999758


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~D~~~~~yR~h~~~la~G~~~~~~~ae~~gk~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~a~G~A~a~k~~~~  160 (362)
T d1umda_          81 PGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRT  160 (362)
T ss_dssp             TTTSEEECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf             78786873134189999987439999999845568986543542124212367444444223230077777876530344


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~~aist~~~~~~~~~~~~~~a~~~gi~~~~vDGnDv~~v~~  240 (362)
T d1umda_         161 GQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYY  240 (362)
T ss_dssp             CCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHH
T ss_pred             CCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHEEEEEEECCCHHHHHHH
T ss_conf             42356522688656773499997764336870366520366644321011145344422232100026744505889999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 a~~~Ai~~~R~g~gP~lIE~~tyR~~gHs~~Dd~~~YR~~~Ei~~w~~~DPi~~~~~~L~~~g~~se~e~~~i~~ei~~~  320 (362)
T d1umda_         241 VVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWNEEWEEDVREEIRAE  320 (362)
T ss_dssp             HHHHHHHHHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHHHHHHHHTTCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             99999999985689789971334335787655202220014667773299899999999987999999999999999999


Q ss_pred             -----------------------------------------C
Q ss_conf             -----------------------------------------9
Q 003496          278 -----------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------~  278 (815)
                                                               -
T Consensus       321 V~~a~~~A~~~p~P~~~~l~~~VY~~~~~~l~~q~~~~~~~~  362 (362)
T d1umda_         321 LERGLKEAEEAGPVPPEWMFEDVFAEKPWHLLRQEALLKEEL  362 (362)
T ss_dssp             HHHHHHHHHHTCBCCGGGGGTTSSSSCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHC
T ss_conf             999999998679989899971315799963999999999559

>d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: O-acetyltransferase
domain: Homoserine O-acetyltransferase
species: Leptospira interrogans [TaxId: 173]

Probab=100.00  E-value=0  Score=27271.05  Aligned_cols=1  Identities=0%  Similarity=-1.390  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~f~le~G~~l~~~~l~Y~t~G~ln~~~~NaVlv~h~~tG~~~~~g~~~~~~~~~gww~~liG~g~~   80 (362)
T d2pl5a1           1 GSIGIIETKYAEFKELILNNGSVLSPVVIAYETYGTLSSSKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKS   80 (362)
T ss_dssp             CCCCBCCCEEEEESCEECTTSCEESSEEEEEEEEECCCTTSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSS
T ss_pred             CCCCCEEEEEEECCCEECCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHCCCCCCCCCCCCCHHHHHCCCCCC
T ss_conf             97673666688518756689887689569999630338889988998788776321155677667883358884599976


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 lDt~~yfVI~~n~lG~~~~ss~~~s~~p~~~~~yg~~fP~~t~~D~v~~~~~ll~~LGI~~l~~viG~SmGGmqAl~wA~  160 (362)
T d2pl5a1          81 FDTNQYFIICSNVIGGCKGSSGPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVESLGIEKLFCVAGGSMGGMQALEWSI  160 (362)
T ss_dssp             EETTTCEEEEECCTTCSSSSSSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHTTCSSEEEEEEETHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHH
T ss_conf             47553579962335676666675420012345557677520168899999999997186726777403577889999998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~yPd~v~~~v~ia~sa~~s~~~~~~~~~~~~aI~~Dp~~~~G~Y~~~~P~~GL~~AR~~~~~~y~s~~~~~~~f~~~~~~  240 (362)
T d2pl5a1         161 AYPNSLSNCIVMASTAEHSAMQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPR  240 (362)
T ss_dssp             HSTTSEEEEEEESCCSBCCHHHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCS
T ss_pred             HCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC
T ss_conf             48367664001346533677799999999999844974236875667836799999999999870926666563333444


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~ve~yl~~~g~k~~~rfDan~yl~l~~a~~~~Di~~~~~l~~aL~~I~AkvLvi~~~sD~lFpp~~~~~~a~  320 (362)
T d2pl5a1         241 GNILSTDFAVGSYLIYQGESFVDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYPPAQSREIVK  320 (362)
T ss_dssp             SCTTTTTTTSCGGGGSTTCCSSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHH
T ss_conf             55442067799999998988874078778999986311146333225999996189988999857552759999999999


Q ss_pred             -----------------------------------------C
Q ss_conf             -----------------------------------------9
Q 003496          278 -----------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------~  278 (815)
                                                               .
T Consensus       321 ~l~~a~~~v~~~eI~S~~GHdaFL~e~~~~~~~I~~FL~~p~  362 (362)
T d2pl5a1         321 SLEAADKRVFYVELQSGEGHDSFLLKNPKQIEILKGFLENPN  362 (362)
T ss_dssp             HHHHTTCCEEEEEECCCBSSGGGGSCCHHHHHHHHHHHHCCC
T ss_pred             HHHHCCCCEEEEEECCCCCCCHHCCCHHHHHHHHHHHHCCCC
T ss_conf             997579976999948999742105488999999999973999

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=100.00  E-value=0  Score=27269.72  Aligned_cols=1  Identities=0%  Similarity=-0.394  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~e~~ltFdDVlLvP~~Sti~s~r~dVdl~~~l~~~~~~~~~~i~l~iPIIsAnMDTVt~~~mA~~la~~Gglgvih   80 (362)
T d1pvna1           1 AKYYNEPCHTFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSVSGEKMAIALAREGGISFIF   80 (362)
T ss_dssp             CEECSSCBCCGGGEEECCCCBCTTCCGGGCBCCEECSCEETTSCCSCEESSSEEECSCTTTCSHHHHHHHHHTTCEEEEC
T ss_pred             CCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEEE
T ss_conf             95456788785566983798767777101360268774024556663569847846888768999999999888977995


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 R~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ag~d~i~IDvAhG~~~~v~~~i~~ir~~~~~~~~IiAGNV  160 (362)
T d1pvna1          81 GSQSIESQAAMVHAVKNFRYLVGAGINTRDFRERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNI  160 (362)
T ss_dssp             CSSCHHHHHHHHHHHHTCCCCCEEEECSSSHHHHHHHHHHHTCSEEEECCSCCCBHHHHHHHHHHHHHHGGGSCEEEEEE
T ss_pred             ECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECHHCCCHHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf             05999999998642332023221211013567777777641854775300001015788999999886533103421244


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 aT~e~~~~L~~aGaD~vkVGIG~Gs~CTTr~~tGvG~Pq~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla  240 (362)
T d1pvna1         161 VDGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALA  240 (362)
T ss_dssp             CSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHTCBCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEE
T ss_conf             67889999997297579844303434343655503771677999999999875332036875353323474662357888


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~GAd~VM~G~~lAg~~Espg~~~~~~g~~~k~~~Gm~S~~a~~~~~~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~l~g  320 (362)
T d1pvna1         241 MGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSSRARNWQRYDLGGKQKLSFEEGVDSYVPYAGKLKDNVEASLN  320 (362)
T ss_dssp             TTCSEEEESHHHHTBTTSSSCEEEETTEEEEEEECTTSTTTCCGGGGCSSSCSSCSSCCBCEEEEECCBCHHHHHHHHHH
T ss_pred             EECCCEEEHHHHHCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf             71340021115405565577310103513666622531213322212446521036899737996268777889999999


Q ss_pred             -----------------------------------------C
Q ss_conf             -----------------------------------------9
Q 003496          278 -----------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------~  278 (815)
                                                               .
T Consensus       321 glrs~~~y~G~~~l~~~~~~~~f~~~t~~~~~E~~~H~~~~~  362 (362)
T d1pvna1         321 KVKSTMCNCGALTIPQLQSKAKITLVSSVSIVEGGAHDVIVK  362 (362)
T ss_dssp             HHHHHHHHTTCSBHHHHHHHCEEEEBCHHHHHHHSCCSSEEC
T ss_pred             HHHHHHHHCCCCCHHHHHHCCEEEEECCCCCCCCCCCCEEEC
T ss_conf             999987532767599997488999988210211568826739

>d3thia_ c.94.1.1 (A:) Thiaminase I {Paenibacillus thiaminolyticus [TaxId: 49283]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Thiaminase I
species: Paenibacillus thiaminolyticus [TaxId: 49283]

Probab=100.00  E-value=0  Score=27269.06  Aligned_cols=1  Identities=0%  Similarity=-1.456  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~tl~~~~~~~~p~~~~~~~~~~~~F~~~~P~V~v~~~~~~~~~~~~~~~pDv~~~~~~~~~~~~~~g~l~~L~~~~~~~~   80 (362)
T d3thia_           1 ITLKVAIYPYVPDPARFQAAVLDQWQRQEPGVKLEFTDWDSYSADPPDDLDVFVLDSIFLSHFVDAGYLLPFGSQDIDQA   80 (362)
T ss_dssp             CEEEEECCSCSSCHHHHHHHHHHHHHHHCTTSEEEECCCCTTTCCCCTTCCEEEEEGGGHHHHHHTTCEECBCGGGCTTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHCCCCCCEEEEECHHHHHHHHHCCCCCCCCHHHHHCC
T ss_conf             98999966788867999999999999988193899996652544489989699989088999998898233871011110


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~dG~~y~vP~~~~~~~~~ynkd~~~~aG~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (362)
T d3thia_          81 EDVLPFALQGAKRNGEVYGLPQILCTNLLFYRKGDLKIGQVDNIYELYKKIGTSHSEQIPPPQNKGLLINMAGGTTKASM  160 (362)
T ss_dssp             GGBCHHHHHHTEETTEECCEEEEEECEEEEEETTCHHHHTCCBHHHHHHHHCCCCCCCSSCCEEEEEEECCCSHHHHHHH
T ss_pred             CHHHHHHHHCEEECCEEEEEEEECCCEEEEECHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHH
T ss_conf             01113344311569979997651210799961468997389999973789999999751257887246305877526889


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~  240 (362)
T d3thia_         161 YLEALIDVTGQYTEYDLLPPLDPLNDKVIRGLRLLINMAGEKPSQYVPEDGDAYVRASWFAQGSGRAFIGYSESMMRMGD  240 (362)
T ss_dssp             HHHHHHHHHTCCCCCSSCCCSSSCCHHHHHHHHHHHHHHCHHHHHCCCTTCCTTHHHHHHHHTBEEEEEEETTHHHHHGG
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEECHHHHHHHHH
T ss_conf             99999861885113677633443679999999999997304775334466770122111005818999916587655543


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~P~~~~~~~~~~~~~~~~i~~~s~~~e~A~~fi~fl~s~e~~~~~~~~~g~~~~~~~~~pa~~~~~e~~~~  320 (362)
T d3thia_         241 YAEQVRFKPISSSAGQDIPLFYSDVVSVNSKTAHPELAKKLANVMASADTVEQALRPQADGQYPQYLLPARHQVYEALMQ  320 (362)
T ss_dssp             GGGTEEEECCBSCSSCCCCEEEEEEEEEETTCSCHHHHHHHHHHHHSHHHHHHHHSCCSTTCCCCCCEESBHHHHHHHTT
T ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf             06766546415787789875450231101676479999999999719999999998468876742445057999863310


Q ss_pred             -----------------------------------------C
Q ss_conf             -----------------------------------------9
Q 003496          278 -----------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------~  278 (815)
                                                               .
T Consensus       321 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~e~lg  362 (362)
T d3thia_         321 DYPIYSELAQIVNKPSNRVFRLGPEVRTWLKDAKQVLPEALG  362 (362)
T ss_dssp             TCTHHHHHHHHHTCTTCEECCCCTTHHHHHHHHTTTHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             398699999999987688761799999999999999998609

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

Probab=100.00  E-value=0  Score=27268.55  Aligned_cols=1  Identities=0%  Similarity=-1.358  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (362)
T d1v8ka_           1 PNWEFARMIKEFRVTMECSPLTVTDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQ   80 (362)
T ss_dssp             CCHHHHHHHHHHHHHHTCCTTTTTCTTSCCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCE
T ss_conf             96689999999986413489877888888888999980899968863799469998899189981886444655676860


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~f~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifaYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lf~~~~~  160 (362)
T d1v8ka_          81 AFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQ  160 (362)
T ss_dssp             EEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTS
T ss_pred             EEECCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHC
T ss_conf             67678661999998999999999999998741681388632578888603330577876555687133115567777630


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~~~~~~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~~T~~N~~S  240 (362)
T d1v8ka_         161 PRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNS  240 (362)
T ss_dssp             HHHHTTCCEEEEEEEEEETTEEEETTTTTEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CC
T ss_pred             CCCCCCCHHHEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             12346323311021463277487634577544322124577465898899946889989987414545430245674567


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 SRSH~i~~i~i~~~~~~~~~l~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~~L~~vi~aL~~~~~hiPyR~SkLT~l  320 (362)
T d1v8ka_         241 SRSHACFQILLRTKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQV  320 (362)
T ss_dssp             CSSEEEEEEEEESSSSEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHH
T ss_pred             CCEEEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf             51005799999855600136765202566554444453156553332211107789999999856999688746888886


Q ss_pred             -----------------------------------------C
Q ss_conf             -----------------------------------------9
Q 003496          278 -----------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------~  278 (815)
                                                               .
T Consensus       321 LkdsllGgns~t~~i~~vsp~~~~~~eTl~TL~fa~rak~It  362 (362)
T d1v8ka_         321 LRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS  362 (362)
T ss_dssp             TTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC
T ss_pred             HHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             133047998619999996987010899999999999974379

>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: 3-isopropylmalate dehydrogenase, IPMDH
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=0  Score=27268.49  Aligned_cols=1  Identities=0%  Similarity=-1.788  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~kI~vipGDGIGpEV~~~~~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~G~~lp~et~e~~~~~dail~Gai   80 (362)
T d1vlca_           1 KIHHHHHHMKIAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLEADAIFLGSV   80 (362)
T ss_dssp             CCCCCCSEEEEEEEEESTHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEEEEC
T ss_pred             CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             97768985799998988667999999999999998762997899998457899997789787899999999789871577


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 g~p~~~~~~~~~~~~~~~~~~lR~~ldlyanvRP~r~~~~~~~~~~~~~~~~~~~iD~vivREnteg~Y~g~~~~~~~~~  160 (362)
T d1vlca_          81 GGPKWDDLPPEKRPEIGGLLALRKMLNLYANIRPIKVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLDEEK  160 (362)
T ss_dssp             CCGGGTTSCSTTSHHHHTHHHHHHHTTCCEEEEEEECCGGGGGGSSSCHHHHTTCCEEEEEEECSSGGGTEEEEEECSSC
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCE
T ss_conf             79986543213477665578899974433220026753034566666555667772379850124675557777788856


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~t~~~~~Riar~Af~~A~~~~k~Vt~v~K~Nv~~~~~lf~~~~~eva~~yp~I~~~~~~vD~~~~~lv~~P~~f  240 (362)
T d1vlca_         161 GFDTMIYDRKTVERIARTAFEIAKNRRKKVTSVDKANVLYSSMLWRKVVNEVAREYPDVELTHIYVDNAAMQLILKPSQF  240 (362)
T ss_dssp             EEEECCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGC
T ss_pred             EEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHCCCCC
T ss_conf             99989943478789999999998618980799943775201589999999999667986999730989999998665777


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 dViv~~Nl~GDIlSDl~a~l~GglGl~ps~nig~~~~fE~~HGSApdiaGk~iaNP~a~ils~ammL~~~lg~~~~A~~i  320 (362)
T d1vlca_         241 DVILTTNMFGDILSDESAALPGSLGLLPSASFGDKNLYEPAGGSAPDIAGKNIANPIAQILSLAMMLEHSFGMVEEARKI  320 (362)
T ss_dssp             SEEEECHHHHHHHHHHHTTSSSCGGGCEEEEESSSEEEEESSCCCTTTTTTTCSCCHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             CEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             58985306666777899998513332101210422323125686201058986480999999999987346986999999


Q ss_pred             -----------------------------------------C
Q ss_conf             -----------------------------------------9
Q 003496          278 -----------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------~  278 (815)
                                                               .
T Consensus       321 ~~Av~~~l~~G~~T~Dlg~~~~~~~~T~e~~dav~~~l~~l~  362 (362)
T d1vlca_         321 ERAVELVIEEGYRTRDIAEDPEKAVSTSQMGDLICKKLEEIW  362 (362)
T ss_dssp             HHHHHHHHHTTCCCGGGCSSGGGCCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             999999998599570004699997769999999999999759

>d2drwa1 e.3.1.1 (A:2-363) D-Amino acid amidase DaaA {Ochrobactrum anthropi [TaxId: 529]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: D-Amino acid amidase DaaA
species: Ochrobactrum anthropi [TaxId: 529]

Probab=100.00  E-value=0  Score=27268.41  Aligned_cols=1  Identities=0%  Similarity=-0.294  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~i~~~~~~~~~~g~~g~~v~v~~~g~~v~~~~~G~ad~~~~~p~t~dt~f~i~SvsK~~ta~~i~~lve~G~l~l   80 (362)
T d2drwa1           1 SDLNNAIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDL   80 (362)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCEEEEEEECTTSCEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHTTSCCT
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCC
T ss_conf             95789999999999775997289999999999999857882056698799998697115689999999999997699877


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 dd~v~~ylp~~~~~~~iTi~~LL~htSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~Ysn~~~~llg~ii  160 (362)
T d2drwa1          81 DEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMII  160 (362)
T ss_dssp             TSBGGGTCTTSTTGGGCBGGGGTTTCSCCCCCTTTSBSSCCCCCCHHHHHHHHHHHSCCCCTTSSCCCCSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEECCCCCCEECCCCHH
T ss_conf             76664420354434332335555326899764332223332321026777766406766532201102454311043022


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 e~~tg~~~~~~~~e~i~~PLgm~~T~~~~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (362)
T d2drwa1         161 AHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAADDENPQWDVSGAGDPVDGVWDSTEWFPLSGANA  240 (362)
T ss_dssp             HHHHTSCHHHHHHHHTHHHHTCCSCEETTTCCCCGGGBCCCEEECBTTCCSCSSBCTTCCCCBTTEEECTTTSCHHHHGG
T ss_pred             HHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             32057526666678888502876523357311454533310211556555643233345676566334621134445566


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 aGgl~sta~Dla~~~~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yG~G~~~~~~~~~~~~gH~G~~~G~~s~~~~~  320 (362)
T d2drwa1         241 AGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRD  320 (362)
T ss_dssp             GTCEEECHHHHHHHHHHHHTTSSSCHHHHHHHHTSCEECCCTTSCEEEECSSCEEEEETTEEEEEEEEEETTEEEEEEEC
T ss_pred             CCCEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCEEEEEEE
T ss_conf             57527189999999999847997899999999974256535799888704369998459941898246578823999999


Q ss_pred             -----------------------------------------C
Q ss_conf             -----------------------------------------9
Q 003496          278 -----------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------~  278 (815)
                                                               +
T Consensus       321 p~~~~~iv~l~N~~~~~~~~~~~~~~~~~~~~il~ai~~~~~  362 (362)
T d2drwa1         321 EETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAIKNSRS  362 (362)
T ss_dssp             TTTCCEEEEEESEECSSTTSHHHHTTHHHHHHHHHHHHHHTC
T ss_pred             ECCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             879989999994999556899999999999999999975649

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=100.00  E-value=0  Score=27268.21  Aligned_cols=1  Identities=0%  Similarity=-1.888  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~q~~~~~l~e~a~~~~~~d~~lll~~y~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~nA~~fl~~~~Q~k~~k~~~~~v~   80 (362)
T d1svma_           1 KQVSWKLVTEYAMETKCDDVLLLLGMYLEFQYSFEMCLKCIKKEQPSHYKYHEKHYANAAIFADSKNQKTICQQAVDTVL   80 (362)
T ss_dssp             CCCCHHHHHHHHHHTTCCCHHHHHHHHHGGGSCSTTCHHHHTTCCHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             97428888988987589739999999998712518889999877789999999860669999873106899999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~kr~~~~~ms~~e~i~~~~~~~~~~~p~~~~~~~~~d~~~~~~il~~l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~  160 (362)
T d1svma_          81 AKKRVDSLQLTREQMLTNRFNDLLDRMDIMFGSTGSADIEEWMAGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFK  160 (362)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTSTTCCCCHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             99997312699899999999999853863334544467888999999998644325899999999998289976769998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs~~~l~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~DeiD~l~~~~dg~~  240 (362)
T d1svma_         161 GPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSV  240 (362)
T ss_dssp             CSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHHHTTHHHHHCSS
T ss_pred             CCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCCCC
T ss_conf             99998889999999998599789997742011888875777799899999876541068997288750731134568860


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~p~i~ttN~~~~~~~r~~Rf~~~i~~~~~~~~~~~~~~l~~i~~~~~l~~~~~~L~~li~~~s~  320 (362)
T d1svma_         241 KVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPV  320 (362)
T ss_dssp             CEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTHHHHTTCTTCHHHHHHHHHHHSCG
T ss_pred             HHHHHHHHHCHHHHCCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCH
T ss_conf             13444210024553167724650654300122466736886268974789999999984035788888999987368987


Q ss_pred             -----------------------------------------C
Q ss_conf             -----------------------------------------9
Q 003496          278 -----------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------~  278 (815)
                                                               .
T Consensus       321 ~D~~~~i~~~~~~~~~~l~~ei~~~~~~~~k~~I~~Gk~ile  362 (362)
T d1svma_         321 AEFAQSIQSRIVEWKERLDKEFSLSVYQKMKFNVAMGIGVLD  362 (362)
T ss_dssp             GGSCGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTSCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
T ss_conf             999999999999999987524149999999999976997779

>d1nqka_ c.1.16.4 (A:) Alkanesulfonate monooxygenase SsuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Bacterial luciferase-like
family: Ssud-like monoxygenases
domain: Alkanesulfonate monooxygenase SsuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=27267.97  Aligned_cols=1  Identities=0%  Similarity=0.303  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~AE~lGfd~~w~~eh~~~~dp~~~la~la~~T~rI~lgt~V~~   80 (362)
T d1nqka_           1 MSLNMFWFLPTHGDGHYLGTEEGSRPVDHGYLQQIAQAADRLGYTGVLIPTGRSCEDAWLVAASMIPVTQRLKFLVALRP   80 (362)
T ss_dssp             CCBEEEEECCTTCEESSTTSSTTEECCCHHHHHHHHHHHHHHTCSEEEECCSTTSCCHHHHHHTTSTTCSSCEEEEEECT
T ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCEEEEEEEECC
T ss_conf             92479997456899887888888788999999999999998499999968888888899999999997490699999739


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~P~~~A~~~AtLd~lS~GR~~lGlG~G~~~~e~~~~g~~~~~~~~~~~~~E~~~ilr~l~~~e~v~~~G~~~~~~~~  160 (362)
T d1nqka_          81 SVTSPTVAARQAATLDRLSNGRALFNLVTGSDPQELAGDGVFLDHSERYEASAEFTQVWRRLLQRETVDFNGKHIHVRGA  160 (362)
T ss_dssp             TTSCHHHHHHHHHHHHHHTTSCEEEEECCCCCHHHHHHHTCCCCTTHHHHHHHHHHHHHHHHTTTCCEEEECSSCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
T ss_conf             98986999999999999749985268863666888852122220245566678989999875025664554124652587


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~p~~~p~ppi~~a~~~p~~~~~Aa~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Gr~~~~~~~~~~~~~~~~~~~~  240 (362)
T d1nqka_         161 KLLFPAIQQPYPPLYFGGSSDVAQELAAEQVDLYLTWGEPPELVKEKIEQVRAKAAAHGRKIRFGIRLHVIVRETNDEAW  240 (362)
T ss_dssp             CCSSCCSSSSSSCEEEECSSHHHHHHHHHHCSEEEEECCCHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEESSHHHHH
T ss_pred             CCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCHHHHH
T ss_conf             54234478997016874265789998874265512458999999999999999999709975242343699944689999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGtpe~V~e~L~~~~  320 (362)
T d1nqka_         241 QAAERLISHLDDETIAKAQAAFARTDSVGQQRMAALHNGKRDNLEISPNLWAGVGLVRGGAGTALVGDGPTVAARINEYA  320 (362)
T ss_dssp             HHHHHHTTTSCHHHHHHHHHHSCC-----------------CTTEEETTEEGGGGSSSSSCSCEEEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHH
T ss_conf             98765665430889999986542012100466776530340144433467767777506888708858999999999999


Q ss_pred             -----------------------------------------C
Q ss_conf             -----------------------------------------9
Q 003496          278 -----------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------~  278 (815)
                                                               -
T Consensus       321 ~~G~d~~~l~~~~~~~~l~~f~eeV~P~l~~~~~~~~~~~~~  362 (362)
T d1nqka_         321 ALGIDSFVLSGYPHLEEAYRVGELLFPLLDVAIPEIPQPQPL  362 (362)
T ss_dssp             TTTCCEEEEECSSHHHHHHHHHHHTGGGSCBCCCCCCCCCCC
T ss_pred             HCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             729998999489998999999998999870135067899998

>d2gjxa1 c.1.8.6 (A:167-528) beta-hexosaminidase A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-N-acetylhexosaminidase catalytic domain
domain: beta-hexosaminidase A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=27266.91  Aligned_cols=1  Identities=0%  Similarity=-0.759  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 f~~RG~mlD~aR~~~~~~~lk~~id~ma~~K~N~lhlHltD~~~~r~e~~~~p~l~~~ga~~~~~~~yT~~d~~elv~yA   80 (362)
T d2gjxa1           1 FPHRGLLLDTSRHYLPLSSILDTLDVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVKEVIEYA   80 (362)
T ss_dssp             CSEEEEEEETTTSCCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCBCCSSCTHHHHHHSSCTTTSCBCHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             98558677638888089999999999998299389999874787600147873144337868878863899999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~rgI~vIPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~v~~E~~~lF~~~~iHiGgDE~~~  160 (362)
T d2gjxa1          81 RLRGIRVLAEFDTPGHTLSWGPGIPGLLTPCYSGSEPSGTFGPVNPSLNNTYEFMSTFFLEVSSVFPDFYLHLGGDEVDF  160 (362)
T ss_dssp             HHTTCEEEEECCCSSSCTTTTTTSTTCEEEEESSSSEEEEEEEECTTCHHHHHHHHHHHHHHHHHCCSSEEECCCCSCCS
T ss_pred             HHCCCEEEECCCCCCHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             97598798536665046899874833137665788877755665777377899899999999885146537740540124


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~w~~~p~~~~~~~~~g~~~~~~~l~~~f~~~~~~~l~~~gk~~i~W~d~~~~~~~l~~d~ii~~W~~~~~~~~~~~~~~  240 (362)
T d2gjxa1         161 TCWKSNPEIQDFMRKKGFGEDFKQLESFYIQTLLDIVSSYGKGYVVWQEVFDNKVKIQPDTIIQVWREDIPVNYMKELEL  240 (362)
T ss_dssp             HHHHHCHHHHHHHHHHTCTTCSHHHHHHHHHHHHHHHHTTTCEEEEEHHHHHTTCCCCTTCEEEECCSSSSSCHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHH
T ss_conf             43336878899998617788999999999999999999739706744410256777899872564314543668989999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~G~~~i~s~~~yl~~~~~g~~w~~~y~~~p~~~~~~~~~~~~ilG~e~~lW~E~i~~~~l~~~~~PRl~A~AE~~Ws  320 (362)
T d2gjxa1         241 VTKAGFRALLSAPWYLNRISYGPDWKDFYVVEPLAFEGTPEQKALVIGGEACMWGEYVDNTNLVPRLWPRAGAVAERLWS  320 (362)
T ss_dssp             HHHTTCEEEECTTCCTTSCBSSCTHHHHHHCCTTCSSCCHHHHTTEEEEEEEECTTSCSTTTHHHHHTTHHHHHHHHHHS
T ss_pred             HHHCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             97579859981674256567777656545531036766865650550347770107778510688899799999999859


Q ss_pred             -----------------------------------------C
Q ss_conf             -----------------------------------------9
Q 003496          278 -----------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------~  278 (815)
                                                               .
T Consensus       321 ~~~~~d~~~f~~Rl~~~~~rL~~~Gi~~~p~~~~~c~~~~~~  362 (362)
T d2gjxa1         321 NKLTSDLTFAYERLSHFRCELLRRGVQAQPLNVGFCEQEFEQ  362 (362)
T ss_dssp             CTTCCCHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCSSCCCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCC
T ss_conf             987889999999999999999977998769998645420329

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=27266.86  Aligned_cols=1  Identities=0%  Similarity=-0.825  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~p~~~g~~~~~~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~   80 (362)
T d1q8ya_           1 YHPAFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGAN   80 (362)
T ss_dssp             CCCCCTTCEETTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCC
T ss_conf             97888888844785799899750778189999999999799999983431336899999999998401455555422767


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~  160 (362)
T d1q8ya_          81 HILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLME  160 (362)
T ss_dssp             TBCCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEE
T ss_pred             CEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEE
T ss_conf             64789987631256520234320003542000001223467868999999999999988876405864656770570563


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~kl~dfg~s~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~  240 (362)
T d1q8ya_         161 IVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKD  240 (362)
T ss_dssp             EEETTTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CH
T ss_pred             CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf             05765644305675314421234454223665210571321466777643201237899999878899898755432102


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rp  320 (362)
T d1q8ya_         241 DDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRA  320 (362)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCB
T ss_pred             HHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCC
T ss_conf             68999999983799878862453220001320122024323577644421000156743589999999998779945790


Q ss_pred             -----------------------------------------C
Q ss_conf             -----------------------------------------9
Q 003496          278 -----------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------~  278 (815)
                                                               .
T Consensus       321 ta~e~L~Hp~f~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  362 (362)
T d1q8ya_         321 DAGGLVNHPWLKDTLGMEEIRVPDRELYGSGSDIPGWFEEVR  362 (362)
T ss_dssp             CHHHHHTCGGGTTCTTCTTCCCTTSCTTCBSTTSTTSSSCCC
T ss_pred             CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC
T ss_conf             899996693407898744477998666788899984354409

>d1qjwa_ c.6.1.1 (A:) Cellobiohydrolase II (Cel6) {Trichoderma reesei, Cel6a [TaxId: 51453]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycosyl hydrolases family 6, cellulases
family: Glycosyl hydrolases family 6, cellulases
domain: Cellobiohydrolase II (Cel6)
species: Trichoderma reesei, Cel6a [TaxId: 51453]

Probab=100.00  E-value=0  Score=27265.23  Aligned_cols=1  Identities=0%  Similarity=0.769  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~gNPf~g~~~yvnP~y~a~v~~~a~~~~~~~~~~~~~~ia~~Pta~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (362)
T d1qjwa_           1 ATYSGNPFVGVTPWANAYYASEVSSLAIPSLTGAMATAAAAVAKVPSFMWLDTLDKTPLMEQTLADIRTANKNGGNYAGQ   80 (362)
T ss_dssp             CCCSSCTTTTSEECCCHHHHHHHHHHTGGGCCHHHHHHHHHHTTSCCCEEECSGGGHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf             97678998897331473058899998751368788999999846780698237788740689999999998726887228


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 lV~Y~iP~RDC~a~ss~G~~~~~~~g~~~Yk~Yid~Ia~~~~~~~~~~~vvIlEPDsL~nlvt~~~~~~c~~~~~~~~~~  160 (362)
T d1qjwa_          81 FVVFDLPDRDCAALASNGEYSIADGGVAKYKNYIDTIRQIVVEYSDIRTLLVIEPDSLANLVTNLGTPKCANAQSAYLEC  160 (362)
T ss_dssp             EEECCCTTCSTTCSTTCCSCCGGGTHHHHHHHHHHHHHHHHHHTTTSCEEEEECSSSHHHHHHCTTSHHHHTTHHHHHHH
T ss_pred             EEEECCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             99936999971444249986656554688999999999999856897439997776066654057844457789999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 l~yAv~~L~~pnv~vYlDaGhsgWlgw~~n~~~~a~~~a~~l~~ag~~~~~rGFatNVSNy~~~~~~~~~~~t~~n~~~~  240 (362)
T d1qjwa_         161 INYAVTQLNLPNVAMYLDAGHAGWLGWPANQDPAAQLFANVYKNASSPRALRGLATNVANYNGWNITSPPSYTQGNAVYN  240 (362)
T ss_dssp             HHHHHHHTCCTTEEEEEECCCTTTTCSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESTTSCCCSSCSSCCGGGTTCSCCS
T ss_pred             HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999970899748999788776678743214789999999984667542327898556887766677765445675514


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 e~~Y~~~l~~~l~~~G~~~~~fVIDTsRNG~gp~~~~~~g~WCNp~G~glG~~Pt~~t~~~~vDA~lWIK~PGESDG~~~  320 (362)
T d1qjwa_         241 EKLYIHAIGPLLANHGWSNAFFITDQGRSGKQPTGQQQWGDWCNVIGTGFGIRPSANTGDSLLDSFVWVKPGGECDGTSD  320 (362)
T ss_dssp             HHHHHHHHHHHHHHTTCCSCEEEEECTTCSSSSCSCSSTTCCSSBSSCCCCSCCBSCCCCTTEEEEECCSCTTBCSCCCC
T ss_pred             HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
T ss_conf             89999999999985368899989857888999988767888879999847899988999876016898578826777888


Q ss_pred             -----------------------------------------C
Q ss_conf             -----------------------------------------9
Q 003496          278 -----------------------------------------V  278 (815)
Q Consensus       278 -----------------------------------------~  278 (815)
                                                               -
T Consensus       321 ~~~~~~D~~c~~~~a~~~aP~AG~Wf~~~f~~Lv~nA~P~~~  362 (362)
T d1qjwa_         321 SSAPRFDSHCALPDALQPAPQAGAWFQAYFVQLLTNANPSFL  362 (362)
T ss_dssp             TTSTTCCGGGGSTTBCSSCCSTTSBCHHHHHHHHHTCSSCCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf             888777766676567899897777479999999972689779

>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: E1-beta subunit of pyruvate dehydrogenase (PP module)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=27196.87  Aligned_cols=1  Identities=0%  Similarity=-0.593  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~p~~~~~lske~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~h~~~GqEa~~vg~~~~l~   80 (361)
T d2ozla1           1 FANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGIN   80 (361)
T ss_dssp             CCSEEEEECCCCEEESCSCCSCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSC
T ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             98876565353302015779988788899999999999999999999999999779875065687877999999998679


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~D~~~~~yR~~~~~la~G~~~~~~~ae~~gk~~g~~~G~~~~~h~~~~~~~~~~~ivg~~~p~A~G~A~a~k~~~~~~v  160 (361)
T d2ozla1          81 PTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEV  160 (361)
T ss_dssp             TTSEEECCSCCHHHHHHTTCCHHHHHHHHTTCTTSTTTTSSCTTCCCBTTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCC
T ss_pred             CCCEECCCCCCHHEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE
T ss_conf             55785144444210223104610223312687565566554400123466667645445655157899997654058976


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~yaist~~~~~~~~~~~~~~~~~~~~~~vdGnD~~av~~a~~~A  240 (361)
T d2ozla1         161 CLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFA  240 (361)
T ss_dssp             EEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGGTTTTSCEEEEETTCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf             99972688766763236555554326765899986786667770110354220001365415996267705799999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~R~g~gP~liE~~TyR~~gHs~~D~~~~YR~~~Ei~~~~~k~DPi~~~~~~Li~~g~~se~e~~~i~~ei~~~V~~A  320 (361)
T d2ozla1         241 AAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDA  320 (361)
T ss_dssp             HHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99986069888999865568887666652124777888744413899999999999879999999999999999999999


Q ss_pred             ----------------------------------------C
Q ss_conf             ----------------------------------------9
Q 003496          278 ----------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------~  278 (815)
                                                              +
T Consensus       321 ~~~A~~sp~P~~~~l~~~VYa~~~p~~~~~~~~~~~~~~~~  361 (361)
T d2ozla1         321 AQFATADPEPPLEELGYHIYSSDPPFEVRGANQWIKFKSVS  361 (361)
T ss_dssp             HHHHHHSCCCCGGGTTCSSSSSCCCEEEECSBTTCEEEECC
T ss_pred             HHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             99998588969899973216899807877689996116789

>d1dhsa_ c.31.1.1 (A:) Deoxyhypusine synthase, DHS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Deoxyhypusine synthase, DHS
domain: Deoxyhypusine synthase, DHS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=27195.21  Aligned_cols=1  Identities=0%  Similarity=-0.792  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~p~~a~~~v~~~s~~~p~~~~~V~g~df~~~~~~~~ll~~~~~~GFqA~~Lg~A~~i~~~Mi~~~~~~~~~~~~~~~~~~   80 (361)
T d1dhsa_           1 APAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEPLSQDEDQHADLT   80 (361)
T ss_dssp             CCHHHHHHHSCCCCCCCTTCCCCCCCCGGGCCCHHHHHHGGGGTCHHHHHHHHHHHHHHHHHHHHTCCC-----------
T ss_pred             CCHHHHHCCEECCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             95045424341678899999744178778998999999999873930788999999999998752257765422222234


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~ctIfLt~agam~saGlr~~i~~LIr~g~Vd~IVtTga~lehDi~~~~g~~y~g~f~~dd~~Lr~~ginRIgd  160 (361)
T d1dhsa_          81 QSRRPLTSCTIFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGN  160 (361)
T ss_dssp             ------CSSEEEEEECTHHHHSTHHHHHHHHHHTTCCSEEEECHHHHHHHHHTTTSCCEECCTTCCHHHHHHTTEEEETT
T ss_pred             CHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCC
T ss_conf             00125666438986144411465799999999859977898068850399999808641076568848876437651220


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 v~Ipee~~~~~e~~i~~il~~~~~e~~~~~~~~~~~e~i~~lg~~i~~~~Sil~~A~~~~vPVf~Pa~~DssiG~~l~~~  240 (361)
T d1dhsa_         161 LLVPNENYCKFEDWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGSLGDMIFFH  240 (361)
T ss_dssp             EEEETHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHCCTTCHHHHHHHTTCCEECTTTTSSHHHHHHHHH
T ss_pred             EEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHH
T ss_conf             63177999999999999999999985404776464999999974268952499999982997654776516699999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~iD~~~D~~~l~~~~~~~~~~G~i~iGGGvpKh~i~~~~l~r~g~dyavqItta~~~dGslSGA~p~EaiSWG  320 (361)
T d1dhsa_         241 SYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGADYAVYINTAQEFDGSDSGARPDEAVSWG  320 (361)
T ss_dssp             HHHSTTCCCCSHHHHHHHHHHHHTCSSEEEEEESCTHHHHHHHHHHHTTTSBSEEEEECCCCSTTCCSTTCCHHHHHHHT
T ss_pred             HHCCCCCEEEHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             96189953559999999999987466762699959826378776455317998799970799986766689833013057


Q ss_pred             ----------------------------------------C
Q ss_conf             ----------------------------------------9
Q 003496          278 ----------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------~  278 (815)
                                                              .
T Consensus       321 Ki~~~a~~v~V~~DATIv~PLl~a~~~~k~~~~~~~~~~~~  361 (361)
T d1dhsa_         321 KIRVDAQPVKVYADASLVFPLLVAETFAQKMDAFMHEKNED  361 (361)
T ss_dssp             SBCTTCCCEEECSCHHHHHHHHHHHTGGGGHHHHHHHTTCC
T ss_pred             CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             61789883799960779999999999975401124322489

>d1x1ia1 a.102.3.2 (A:26-386) Xanthan lyase {Bacillus sp. gl1 [TaxId: 84635]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Chondroitin AC/alginate lyase
family: Hyaluronate lyase-like catalytic, N-terminal domain
domain: Xanthan lyase
species: Bacillus sp. gl1 [TaxId: 84635]

Probab=100.00  E-value=0  Score=27193.81  Aligned_cols=1  Identities=0%  Similarity=0.071  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 sdd~~~lr~rw~~~l~g~~~~d~~d~~~~~~l~~l~~~A~~~~~~~~~~~~~~~lW~~l~~~~~~~~l~~~~~rl~~mA~   80 (361)
T d1x1ia1           1 SDEFDALRIKWATLLTGGPALDPADSDIAARTDKLAQDANDYWEDMDLSSSRTYIWYALRGNGTSDNVNAVYERLRTMAL   80 (361)
T ss_dssp             CCHHHHHHHHHHHHHHCCTTCCTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCSCSSGGGCCTTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             91899999999999708876786768999999999999997787458887766767888766630479999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 Ay~~pgs~ly~d~~l~~~I~~al~~~~~~~y~~~~~~~~~NWW~~eIg~P~~l~~~liLl~d~l~~~~~~~~~~~i~~f~  160 (361)
T d1x1ia1          81 AATTVGSSLYGNADLKEDILDALDWLYVNSYNSTRSRSAYNWWHWQLGIPMSLNDIAVLLYDDISAARMATYMDTIDYFT  160 (361)
T ss_dssp             HHHSTTCTTTTCHHHHHHHHHHHHHHHHHTSSTTSCTTSSSHHHHHTHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHC
T ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf             98299985538999999999999999971888888998999125551757999999998514169999999998999857


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 p~~~~TGaN~~d~a~~~~~rglL~~d~~~~~~a~~~i~~~~~~~~v~~gdG~~~DgSf~qH~~~~Y~G~YG~~~l~~~~~  240 (361)
T d1x1ia1         161 PSIGLTGAARAWQAIVVGVRAVIVKDAVKLAAARNGLSGTGIFPYATGGDGFYADGSFVQHTTFAYTGGYGSSVLETTAN  240 (361)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTSTTSSSCCSSSSEECTTSCEEETTTEECTTTHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCCCEECCCCEECCCCEECCCCCHHHHHHHHHH
T ss_conf             89886530788789999999998469999999999976401305526888651478634257710167533999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~l~gT~~~~~~~~~~~l~~~i~~g~~~~i~~g~~~~~v~GR~ISR~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~  320 (361)
T d1x1ia1         241 LMYLLSGSTWSVSDPNQSNVWQWIYEAYRPLLYKGAMMDMVRGREISRSYAQDHAVGHGIVASIVRLAQFAPAPHAAAFK  320 (361)
T ss_dssp             HHHHHTTSTTCCCCGGGGHHHHHHHHTTGGGEETTEECGGGSGGGGGCTTCCHHHHHHHHHHHHHHHTTTCCTTHHHHHH
T ss_pred             HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             99997799887887899999999996002574377016657764014788654457999999999987229999999999


Q ss_pred             ----------------------------------------C
Q ss_conf             ----------------------------------------9
Q 003496          278 ----------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------~  278 (815)
                                                              .
T Consensus       321 ~~~k~~~~~d~~~~~~~~~~~~~~~~~~~ll~d~~i~~~~~  361 (361)
T d1x1ia1         321 QIAKRVIQEDTFSSFYGDVSTDTIRLAKAIVDDPSIAPAAA  361 (361)
T ss_dssp             HHHHHHHHHCCSSCGGGGSCHHHHHHHHHHHTCTTCCCCCC
T ss_pred             HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf             99999986076654235887889999999856898897879

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=100.00  E-value=0  Score=27193.49  Aligned_cols=1  Identities=0%  Similarity=-1.058  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~F~pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~   80 (361)
T d2c0ra1           1 SERAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQF   80 (361)
T ss_dssp             CCCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHH
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHH
T ss_conf             99873357988188899999999987632146865434576898999999999999999968999878999788725999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ea~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~tg~~~~~~~i~~  160 (361)
T d2c0ra1          81 AMIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEASNYMTLPKLQEIQLQDNAAYLHLTSNETIEGAQFKA  160 (361)
T ss_dssp             HHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGTTCSCCCGGGCCCCTTEEEEEEESEETTTTEECSS
T ss_pred             HHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCEECCEEEE
T ss_conf             99985255689823898404111125555430374012102343333415555542046761489972464125115777


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~al~~vDavss~g~~~id~~~~di~~~s~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (361)
T d2c0ra1         161 FPDTGSVPLIGDMSSDILSRPFDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPP  240 (361)
T ss_dssp             CCCCTTSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCC
T ss_pred             EECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             30468841899860333320234334325897413345245673799876876627443223324120003331014664


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~~~~~~~~~~~L~~~G  320 (361)
T d2c0ra1         241 SFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEG  320 (361)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTT
T ss_pred             CEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf             20230115677766502424777789999998756665404654345777431454399997898546999999999788


Q ss_pred             ----------------------------------------C
Q ss_conf             ----------------------------------------9
Q 003496          278 ----------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------~  278 (815)
                                                              .
T Consensus       321 I~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~~~  361 (361)
T d2c0ra1         321 FVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRSRG  361 (361)
T ss_dssp             EESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred             CEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             88736988678698870688999999999999999999659

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=0  Score=27193.34  Aligned_cols=1  Identities=0%  Similarity=-0.161  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~l~~pGP~~~~~~V~~A~~~~~~~~~~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~   80 (361)
T d1m32a_           1 YLLLTPGPLTTSRTVKEAMLFDSCTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVL   80 (361)
T ss_dssp             CEECSSSSCCCCHHHHHTTCCCCCTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEE
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             95036999877799999851544698868999999999999999829899988999889789999999998654224653


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~  160 (361)
T d1m32a_          81 IVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTY  160 (361)
T ss_dssp             EEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEE
T ss_pred             EEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEE
T ss_conf             01101223457777655301233222234678640256899874247662699843002342011234442211452146


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  240 (361)
T d1m32a_         161 IVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSP  240 (361)
T ss_dssp             EEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCC
T ss_pred             EEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC
T ss_conf             75200256745532233445268763034533799866789625554100024566432200111011234566678777


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~~v~~~~~p~~~~~~~~~~~~~l~~~g  320 (361)
T d1m32a_         241 THTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQG  320 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCC
T ss_conf             10446899999999985003566788899887777777622875467856649967999899988779999999999889


Q ss_pred             ----------------------------------------C
Q ss_conf             ----------------------------------------9
Q 003496          278 ----------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------~  278 (815)
                                                              .
T Consensus       321 i~i~~G~~~~~~~~Ris~~g~~~~~di~~lv~al~~~L~~~  361 (361)
T d1m32a_         321 FVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMYWT  361 (361)
T ss_dssp             EECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred             CEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             28978986889989984788899999999999999975999

>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Homocysteine S-methyltransferase
family: Homocysteine S-methyltransferase
domain: Betaine-homocysteine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=27190.41  Aligned_cols=1  Identities=0%  Similarity=-1.888  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~llerL~~~~ililDGgmGteL~~rG~~~~~~Ws~~~~l~~Pe~V~~iH~~yi~AGAdiI~TNTy~a~~~~l~~~g~~~   80 (361)
T d1lt7a_           1 KGILERLNAGEIVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLENRGNYV   80 (361)
T ss_dssp             CCHHHHHHTTCCEECCTTHHHHHHHHTC-------------CHHHHHHHHHHHHHHTCSEEEEEC---------------
T ss_pred             CHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCHHH
T ss_conf             95889862699799978889999977999899988688852959999999999996799998278857879998613266


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~aa~~~a~~~~~~~~~~VaGsigp~~~~~~~~~~~~~~~~~~~q~~~l~~~gvD~il~ETm~~~~Ea~~a  160 (361)
T d1lt7a_          81 LEKISGQEVNEAAADIARQVADEGDALVAGGVSQTPSYLSAKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWA  160 (361)
T ss_dssp             --------CHHHHHHHHHHHHHTTTCEEEEEECCCHHHHTTCCHHHHHHHHHHHHHHHHHTTCSEEEECCCSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             78899999999999998510244321010256678631121104788999999899887504322336777568999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~a~~~~~~Pv~~s~t~~~~g~l~~g~~~e~~~~~~~~~~~~~g~nc~~~p~~~~~~i~~l~~~~~~~~~~~~~~~~p~~  240 (361)
T d1lt7a_         161 VETLIASGKPVAATMAIGPEGDLHGVPPGEAAVRLVKAGASIIGVNCHFDPTISLKTVKLMKEGLEAAQLKAHLMSQPLA  240 (361)
T ss_dssp             HHHHGGGSSCEEEEECCBTTBSTTSCCHHHHHHHHHHTTCSEEEEESSSCHHHHHHHHHHHHHHHHHTTCCCEEEEECCS
T ss_pred             HHHHHHCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             99986036608898787178863677849999988730620555214554676899999999765541455135404652


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~pn~~~~~~~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~Ga~iIGGCCGttP~HI~~la~~l~~~~~~~~p~~~~~~~  320 (361)
T d1lt7a_         241 YHTPDANKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEKHGS  320 (361)
T ss_dssp             BCCTTCCTTCGGGSTTTTTSCGGGBCCHHHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHTHHHHSSCCC-------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             33778776566789887687665647999999999999987990999898798999999999985145899998888877


Q ss_pred             ----------------------------------------C
Q ss_conf             ----------------------------------------9
Q 003496          278 ----------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------~  278 (815)
                                                              .
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  361 (361)
T d1lt7a_         321 WGSGLDMHTKPWVRARARKEYWENLRIASGRPYNPSMSKPD  361 (361)
T ss_dssp             -------------CTTSCHHHHHHCCCCCSCTTSCSCCCCC
T ss_pred             CCCCEECCCCCEECHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             36776426875015446599998626678998881024898

>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Pyrococcus abyssi [TaxId: 29292]

Probab=100.00  E-value=0  Score=27190.41  Aligned_cols=1  Identities=0%  Similarity=0.303  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~~~~v~~~~P~p~G~lHiGH~~~~~i~~Dil~R~~r~~G~~V~~v~g~D~~g~~i~~~A~~~g~~~~~~~~~~~~~~~~   80 (361)
T d1rqga2           1 MVRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKI   80 (361)
T ss_dssp             CCEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf             96599944898889873456445629999999999981599267158537650999999998299999999999986000


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~f~~~~~~  160 (361)
T d1rqga2          81 TFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFAICGRPISFRDSAHYYIKMQDF  160 (361)
T ss_dssp             HHHHHTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGTTTCCBCEEEEEEEEEECGGGT
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCHH
T ss_conf             00001222233544566002344553443101368533124664100022011033213589954310263478750113


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~d~~isr~~~wg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  240 (361)
T d1rqga2         161 AERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKP  240 (361)
T ss_dssp             HHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCH
T ss_conf             54432101335433210345542002023333333346435667654346788278750345546564566676667733


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~G~KMSKSlGN~I~~  320 (361)
T d1rqga2         241 NEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWV  320 (361)
T ss_dssp             TTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBH
T ss_pred             HHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCEECCCCCCCCCCH
T ss_conf             57777654016886348734655533100148999998632565542014778978897023975898668779988788


Q ss_pred             ----------------------------------------C
Q ss_conf             ----------------------------------------9
Q 003496          278 ----------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------~  278 (815)
                                                              -
T Consensus       321 ~d~i~~yg~D~lR~~l~~~~p~~~d~dfs~~~~~~~~n~~~  361 (361)
T d1rqga2         321 HEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEEL  361 (361)
T ss_dssp             HHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC
T ss_conf             99998868089999999608888999889999999864589

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=27188.65  Aligned_cols=1  Identities=0%  Similarity=-1.158  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~df~~p~~i~eal~~~~~~~~~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~~   80 (361)
T d1d2fa_           1 LLPFTISDMDFATAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSE   80 (361)
T ss_dssp             CEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSC
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCC
T ss_conf             92738789799998999999999985788899899898999999999999838999802599908889999987653111


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~~  160 (361)
T d1d2fa_          81 TGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMAD  160 (361)
T ss_dssp             TTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHH
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf             23223233334520368998503437861133332223322211021003677416873044432233320234343200


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (361)
T d1d2fa_         161 LCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSP  240 (361)
T ss_dssp             HHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSC
T ss_pred             HHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCC
T ss_conf             11332200010234332323333456532222233333334454444445420034132267888876510223466510


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~~~~~~l~~~~~~~~~~~~~Ll~~~gv~  320 (361)
T d1d2fa_         241 SVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVA  320 (361)
T ss_dssp             CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCEE
T ss_conf             01247889987503411210133322036778888765310223355567415999983589999999999999869999


Q ss_pred             ----------------------------------------C
Q ss_conf             ----------------------------------------9
Q 003496          278 ----------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------~  278 (815)
                                                              .
T Consensus       321 v~pG~~F~~~~~~~vRis~~~~~e~l~~al~rl~~~l~~lr  361 (361)
T d1d2fa_         321 IMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR  361 (361)
T ss_dssp             CEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             EEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC
T ss_conf             98360018899987999971899999999999999999619

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=100.00  E-value=0  Score=27188.33  Aligned_cols=1  Identities=0%  Similarity=-0.793  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vihl   80 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL   80 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEC
T ss_conf             97999888767999999999977997899984798644277787653168847998657898999999975799999989


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 Aa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e~~~  160 (361)
T d1kewa_          81 AAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTA  160 (361)
T ss_dssp             CSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTSC
T ss_pred             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             60166666775999999999999999999999841222101468549999344101177866775434567887566889


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~v~g~g~~~r~~i~v~D~a  240 (361)
T d1kewa_         161 YAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHA  240 (361)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCEEEECEEHHHHH
T ss_conf             99999899999999999999999968989999138568929985769999999997499817947999689078899999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~ai~~~~~~~~~~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~P~  320 (361)
T d1kewa_         241 RALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPL  320 (361)
T ss_dssp             HHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCS
T ss_pred             HHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCEEEECHHHHHHHHCCCCC
T ss_conf             99999985698899699899997534777767653001233445676543255689999875531578999998799889


Q ss_pred             ----------------------------------------C
Q ss_conf             ----------------------------------------9
Q 003496          278 ----------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------~  278 (815)
                                                              .
T Consensus       321 ~~l~e~i~~ti~w~~~n~~~~~~~k~~~~~~~~~~~y~~~~  361 (361)
T d1kewa_         321 ETFESGIRKTVEWYLANTQWVNNVKSGAYQSWIEQNYEGRQ  361 (361)
T ss_dssp             CCHHHHHHHHHHHHHHCHHHHHHSCCHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             89999999999999986998887661778999998515699

>d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=100.00  E-value=0  Score=27185.83  Aligned_cols=1  Identities=0%  Similarity=-0.493  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~q~f~w~~~~~~~~~~gi~~kLdylk~LGv~~Iwl~Pv~~~~~~~~~~gY~~~dy~~~~~~~~~~~vd   80 (361)
T d1mxga2           1 AKYLELEEGGVIMQAFYWDVPGGGIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVE   80 (361)
T ss_dssp             CCSSCGGGTCCEEECCCTTCCCSSCHHHHHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSS
T ss_pred             CCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             93124455887999452687887855999999789999649998996957407999889998865665567543456778


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~Gt~~d~~~LV~~aH~~GikVIlD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (361)
T d1mxga2          81 TRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTANYLDFHPNELHCCDEGTFG  160 (361)
T ss_dssp             CSSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCCCEEEEETTTTEEEEEECTTCTTCCSCCCGGGBSSSSSCSCCSCCCT
T ss_pred             CCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             78899999999999999779979998603255577656577666556545665567888766555676666554223456


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~giDGfR~Daa~~v~~~f~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~  240 (361)
T d1mxga2         161 GFPDICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKGYGAWVVRDWLNWWGGWAVGEYWDTNVDALLSWAYESGA  240 (361)
T ss_dssp             TSCBBCTTSHHHHHHHTSSTTSHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHHHCCCEEECCCCSCHHHHHHHHHHHTS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHCCHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHCCCC
T ss_conf             76423677605689999999987655441687604505421199999987775168733256346788998655532688


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fl~NHD~~R~~~~~~a~a~llt~pGiP~iyYGd~~~~  320 (361)
T d1mxga2         241 KVFDFPLYYKMDEAFDNNNIPALVYALQNGQTVVSRDPFKAVTFVANHDTDIIWNKYPAYAFILTYEGQPVIFYRDFEEW  320 (361)
T ss_dssp             EEECHHHHHHHHHHHTTTCHHHHHHHHHTTCSSTTTCTTTEEEESCCSSCCCCSCHHHHHHHHHHSSSEEEEEHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHEEECCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf             43041589999999944983789999862521025798781336736678010158999999982899017885897566


Q ss_pred             ----------------------------------------C
Q ss_conf             ----------------------------------------9
Q 003496          278 ----------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------~  278 (815)
                                                              +
T Consensus       321 ~~~~~~~~l~~~~~~~~~g~~~~~~~~~d~~~f~R~gd~~~  361 (361)
T d1mxga2         321 LNKDKLINLIWIHDHLAGGSTTIVYYDNDELIFVRNGDSRR  361 (361)
T ss_dssp             SCHHHHHHHHHHHHHTCCSCEEEEEECSSEEEEEECCCSSC
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCCCC
T ss_conf             77079999999999716798478987799899996788889

>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type A [TaxId: 556]

Probab=100.00  E-value=0  Score=27184.79  Aligned_cols=1  Identities=0%  Similarity=0.769  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~s~~~~G~a~~~ggttGG~gg~~g~v~~Vt~l~dL~~al~~~~~p~iI~v~G~I~~~~~~~~~~~~~~~~~   80 (361)
T d1pe9a_           1 AELVSDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKAR   80 (361)
T ss_dssp             CCCCCTTTTCCCCSSSGGGSSSCCCTTTTCCGGGEEEECSHHHHHHHHTTTTSCEEEEECSEEETTTTCCCCSHHHHHHH
T ss_pred             CCCCCCCHHHCCCCCCEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf             95212111322477634351799876888848779996999999998747997089998549978887443332220223


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~i~v~sn~TI~G~g~~~~i~~~gl~i~~~~~~~NVIiRnl~ir~~~~~~~~~~~~~~~~~~~Dai~i~~~s~~VwIDH~  160 (361)
T d1pe9a_          81 SQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHV  160 (361)
T ss_dssp             SEEECCSSEEEEECTTCCEEESSEEEEEGGGTCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEETTCEEEEEESC
T ss_pred             CEEEECCCCEEEEECCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECC
T ss_conf             15871898579870688489621699850366426999827865575577765668775667873687517743999852


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 s~s~~~~~~~~~~~~~~~~~~~~Dg~~di~~~s~~vTiS~~~f~~h~~~~l~G~~d~~~~~d~g~~~vT~hhN~~~~~~~  240 (361)
T d1pe9a_         161 TISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTE  240 (361)
T ss_dssp             EEECTTSCGGGCCEETTEECCCCCCSEEECTTCEEEEEESCEEEEEEECEEESCCTTCHHHHTTCCEEEEESCEEEEEEE
T ss_pred             EECCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf             74058766533345567630541025875057431373387546877623735677776555786259997854268757


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 R~P~~r~G~~Hv~NNy~~n~~~~~~~~~~y~~~~~~~a~il~E~NyF~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~  320 (361)
T d1pe9a_         241 RAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNGSIFSDNGSVLNGSA  320 (361)
T ss_dssp             CSSEESSCEEEEESCEEEEETTCSSSCCCCSEEECTTCEEEEESCEEEEETCCGGGGGGGEEESSCCEEEEESCEETTEE
T ss_pred             CCCCEECCEEEEECCEEECCCCCCCCCCCEEEECCCCCEEEEECEEEECCCCCCCCCCCEEECCCCCEEECCCEEECCCC
T ss_conf             68873076489989665368676430001565057887799985088899987553220012178877955882520741


Q ss_pred             ----------------------------------------C
Q ss_conf             ----------------------------------------9
Q 003496          278 ----------------------------------------V  278 (815)
Q Consensus       278 ----------------------------------------~  278 (815)
                                                              -
T Consensus       321 ~~~~~~~~~~~~~~~py~y~~~~~a~~v~~~V~~~AGaGkl  361 (361)
T d1pe9a_         321 VDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSGKL  361 (361)
T ss_dssp             CCCTTSSCBCCCSCCCSCCCCCCCCHHHHHHHHHHCSTTCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf             23368765555667875210456257788988744798879

>d1sq1a_ d.258.1.1 (A:) Chorismate synthase, AroC {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a+b)
fold: Chorismate synthase, AroC
superfamily: Chorismate synthase, AroC
family: Chorismate synthase, AroC
domain: Chorismate synthase, AroC
species: Campylobacter jejuni [TaxId: 197]

Probab=100.00  E-value=0  Score=27120.66  Aligned_cols=1  Identities=0%  Similarity=-1.391  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 mntfG~~~r~tt~GESHG~~lg~vidG~PaGl~i~~e~I~~~L~RR~pg~~~~t~R~E~D~veilSGv~~G~TtG~PI~~   80 (360)
T d1sq1a_           1 MNTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELDKRKGGSKFATPRKESDKAQVLSGVFEGYTTGHPIAI   80 (360)
T ss_dssp             CCEECSSSEEEEECCGGGSCEEEEEECCCSSCBCCHHHHHHHHHHTTC-----------CCEEECSSEETTEECSSCEEE
T ss_pred             CCCCCCCEEEEEEECCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCEEEE
T ss_conf             98775523898525578884489993409588609999999996179999889867888717992263689876750078


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~I~N~d~~s~dy~~~~~~pRPGHAD~~~~~KYg~~D~RgggRsSaReTa~rVaaGaiAk~lL~~~gI~v~s~v~~IG~~~  160 (360)
T d1sq1a_          81 VVFNENAHSKDYDNLKDLFRPAHADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLREFDICVQSGVFGVGTFV  160 (360)
T ss_dssp             EEC----------------------------------------CCCTHHHHHHHHHHHHHHHHTTTCEEEEEEEEETTEE
T ss_pred             EEECCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEEEEEEE
T ss_conf             88716787310466623678750777876553985776887515999999999999999999862100666788996661


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~s~vrc~d~~~~~~m~~~I~~ak~~gDSvGG~ve~~~~gvP~GLG~p~fdkLda~LA~A~mSIpAv  240 (360)
T d1sq1a_         161 SNLKEEEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGLGEVLYDKLDSKLAHALMGINAV  240 (360)
T ss_dssp             CCSCGGGSCHHHHHHSTTCBSCTTTHHHHHHHHHHHHHTTCCCCEEEEEEEESCCBSCSBTTTBCHHHHHHHHHHTSTTE
T ss_pred             CCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCEECCCCCHHHHHHHHCCCCC
T ss_conf             47776646877732573347546778999999999854578763189999846997648601365135888777336310


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 KGVE~G~Gf~~a~~~GSe~nD~~~~~~~~tN~~GGi~GGiSnG~pi~~rva~KP~sSi~k~q~TVd~~~~~~~~~~~gRh  320 (360)
T d1sq1a_         241 KAVEIGEGINASKMRGSCNNDALKDGKFLSNHSGGILGGISNGENLILKTYFKPTPSIFAKQESIDKFGNNLKFELKGRH  320 (360)
T ss_dssp             EEEEETTGGGGGGSCHHHHCCCCSSSSCSCCTTCSEETTEEBSSCEEEEEEECCCC---------------------CCS
T ss_pred             EEEEECCCHHHHHHHHHHCCCHHHCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf             01530565565420066462222136644456786000235888628999978875567753222178988788557877


Q ss_pred             ---------------------------------------C
Q ss_conf             ---------------------------------------9
Q 003496          278 ---------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------~  278 (815)
                                                             .
T Consensus       321 Dpc~vprA~~V~Eam~a~vlad~~L~~~~~~~~~~~~~~g  360 (360)
T d1sq1a_         321 DPCVGVRGSVVASAMVRLVLADCLLLNASANLNNLKNAYG  360 (360)
T ss_dssp             CSCTHHHHHHHHHHHHHHHHHHHHHHTGGGSHHHHHHHTC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf             8707165049999999999999999845779999875449

>d1qo5a_ c.1.10.1 (A:) Fructose-1,6-bisphosphate aldolase {Human (Homo sapiens), liver isozyme [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Fructose-1,6-bisphosphate aldolase
species: Human (Homo sapiens), liver isozyme [TaxId: 9606]

Probab=100.00  E-value=0  Score=27120.17  Aligned_cols=1  Identities=0%  Similarity=0.171  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~e~~~eL~~~a~~~~~~GKGiLAaDeS~gT~~Krl~~igventeenr~~yR~~l~tt~~~~~~~IsGvILfe   80 (360)
T d1qo5a_           1 AHRFPALTQEQKKELSEIAQSIVANGKGILAADESVGTMGNRLQRIKVENTEENRRQFREILFSVDSSINQSIGGVILFH   80 (360)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHSTTSCEEEEECCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSCGGGGGTEEEEEECT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHCCEEEEECCH
T ss_conf             99877689999999999999981489879982689983777898769999779999998888518703435656898369


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 eTl~q~~~~g~~~~~ll~~kGIvPgIKVDkGl~~l~~~~ge~~t~gLdgL~~Rl~~y~~~Ga~faKwRaVi~i~~~~ps~  160 (360)
T d1qo5a_          81 ETLYQKDSQGKLFRNILKEKGIVVGIKLDQGGAPLAGTNKETTIQGLDGLSERCAQYKKDGVDFGKWRAVLRIADQCPSS  160 (360)
T ss_dssp             TGGGCBCTTSCBHHHHHHHTTCEEEEECCCCEEECTTSSSCEEECCCTTHHHHHHHHHHTTCCEEEEEEEECCBTTBSCH
T ss_pred             HHHHHHCCCCCCHHHHHHHCCCEEEEECCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCH
T ss_conf             99841423677466899865963578348750007667765335662018899999986474445212200245577745


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~I~~na~~laryA~i~q~~GLVPIVEPEVlidg~h~~e~~~~vt~~vl~~l~~~l~~~~V~LeG~lLKpnMv~pG~~~~  240 (360)
T d1qo5a_         161 LAIQENANALARYASICQQNGLVPIVEPEVIPDGDHDLEHCQYVTEKVLAAVYKALNDHHVYLEGTLLKPNMVTAGHACT  240 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEECCBCCCCCTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf             88999999999999999971976431433245788746889999999999999887652134678742001025511055


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~va~~Tv~~l~~~vp~~VpgIvfLSGGqS~eeAt~~LnamN~~~~~~pW~lsfSygRALQ~s~Lk~W~g~~~n~  320 (360)
T d1qo5a_         241 KKYTPEQVAMATVTALHRTVPAAVPGICFLSGGMSEEDATLNLNAINLCPLPKPWKLSFSYGRALQASALAAWGGKAANK  320 (360)
T ss_dssp             CCCCHHHHHHHHHHHHHHHSCTTCCEEEEBCTTCCHHHHHHHHHHHHHCSSCCCSEEEEEESGGGTHHHHHHHTTCGGGH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCHHH
T ss_conf             55787888899887764303667871001688744888999999986157899976899643756189999857881428


Q ss_pred             ---------------------------------------C
Q ss_conf             ---------------------------------------9
Q 003496          278 ---------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------~  278 (815)
                                                             -
T Consensus       321 ~~aQ~~~~~ra~~Ns~A~~G~y~~~~~~~~~~~~~lfva~  360 (360)
T d1qo5a_         321 EATQEAFMKRAMANCQAAKGQYVHTGSSGAASTQSLFTAC  360 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCCCCCSCCCHHHHSCCSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCC
T ss_conf             9999999999986068756740788887865443003139

>d1jdwa_ d.126.1.2 (A:) L-arginine: glycine amidinotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Amidinotransferase
domain: L-arginine: glycine amidinotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=27117.52  Aligned_cols=1  Identities=100%  Similarity=2.861  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      |                                                                               
T Consensus         1 ~~vn~~sE~~~Lk~VivGr~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ea~ee~d~l~~~Le~~GV~V~r   80 (360)
T d1jdwa_           1 CPVSSYNEWDPLEEVIVGRAENACVPPFTIEVKANTYEKYWPFYQKQGGHYFPKDHLKKAVAEIEEMCNILKTEGVTVRR   80 (360)
T ss_dssp             CCCBBCBSSSCEEEEEECBCTTCBCCCCCHHHHTTSCGGGHHHHHHHTTSBSCHHHHHHHHHHHHHHHHHHHHTTCEEEC
T ss_pred             CCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             99722767463739999517767799976221347856665542332146455999999999999999999876967861


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 p~~~~~~~~~~~~~~~~~~~~~~~~RD~~~~ig~~~i~~~~~~~~r~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (360)
T d1jdwa_          81 PDPIDWSLKYKTPDFESTGLYSAMPRDILIVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELY  160 (360)
T ss_dssp             CCCCCTTCEEECSSCEEECCCBCCHHHHEEEEBTEEEECCBSCGGGTTGGGGTHHHHHHHHHTTCEEEECCCCCCCGGGB
T ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf             46233310101000003675545476202663794233333456553524454157887514675304435543345333


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~H  240 (360)
T d1jdwa_         161 NQDYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMH  240 (360)
T ss_dssp             CTTCCCSSHHHHHHHHHHTCCSBCSSSCCBCGGGEEEETTEEEECCCSSCCHHHHHHHHHHHTTTCEEEECCBSSCCSSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEECCCEEECCCCEEECCCCEEECCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHCC
T ss_conf             45544544454321112463254055125425420111652120234422135899998644665311102336733327


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 lD~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~N~LsI~p~~Vi~~~~n~~~~~~L  320 (360)
T d1jdwa_         241 IDATFNIIGPGIVLSNPDRPCHQIDLFKKAGWTIITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMF  320 (360)
T ss_dssp             STTTEEEEETTEEEECTTSCBTTHHHHHHTTCEEECCCCCCCCTTSCCSSSCGGGGGCCEEEETTEEEEETTCHHHHHHH
T ss_pred             CCCEEEEECCCCEEEECCCCCHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHCCEEEEEEECCCEEEECCCCHHHHHHH
T ss_conf             66226871587189951336355531332585358535223454542153453051589997699999908889999999


Q ss_pred             ---------------------------------------C
Q ss_conf             ---------------------------------------9
Q 003496          278 ---------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------~  278 (815)
                                                             .
T Consensus       321 ~~~Gi~vi~i~~~e~~~~~GG~~CmT~pl~Reg~~e~y~~  360 (360)
T d1jdwa_         321 EKLGITTIKVNIRNANSLGGGFHCWTCDVRRRGTLQSYLD  360 (360)
T ss_dssp             HHTTCEEEEECCHHHHTTTCCTTTTEEEEEESCCCCCSCC
T ss_pred             HHCCCEEEEECHHHHHCCCCCCEEECCCEEECCCCCCCCC
T ss_conf             9888989992626543159997384725087786554669

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=27116.91  Aligned_cols=1  Identities=0%  Similarity=-1.887  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~nF~pGP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a   80 (360)
T d1bjna_           1 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAA   80 (360)
T ss_dssp             CCEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred             CEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHH
T ss_conf             93774798858899999999998751024686543457678899999999999999996899997799978826888863


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~~~~i  160 (360)
T d1bjna_          81 VPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDET  160 (360)
T ss_dssp             HHHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEETTEEEECCGGGCCCCSSCSCEEECSEETTTTEECCCC
T ss_pred             HHHCCCCCCCCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCE
T ss_conf             00102566543330035630344687776417632121012477764035666412577604999655555457652100


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~v~vDa~~~~~~~~vd~~~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (360)
T d1bjna_         161 PDFGADVVVAADFSSTILSRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPP  240 (360)
T ss_dssp             CCCCTTCCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCC
T ss_pred             ECCCCCCEEEEEEECCCCCEEEEECCCEEEEEECCCCCCCCCCCEEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             01244522565662352424436513305999726665447776267641012211446774112678876532024444


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~~~~~~~~~~~l~~~Gi  320 (360)
T d1bjna_         241 TFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLADSALDKLFLEESFAAGL  320 (360)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESSGGGHHHHHHHHHHTTE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf             30278889999988641068999999999999988755335430125774344523999875885249999999997898


Q ss_pred             ---------------------------------------C
Q ss_conf             ---------------------------------------9
Q 003496          278 ---------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------~  278 (815)
                                                             .
T Consensus       321 ~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e~~~~~~  360 (360)
T d1bjna_         321 HALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRHG  360 (360)
T ss_dssp             ECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred             EEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             7634877567388983488999999999999999999739

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=100.00  E-value=0  Score=27116.46  Aligned_cols=1  Identities=0%  Similarity=0.038  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~nF~pGP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~   80 (360)
T d1w23a_           1 VKQVFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQF   80 (360)
T ss_dssp             CCCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH
T ss_pred             CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHH
T ss_conf             98436707988488999999999998753046865434576788999999999999999968999878999478489999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~i~~  160 (360)
T d1w23a_          81 TMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQN  160 (360)
T ss_dssp             HHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTEECSS
T ss_pred             HHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHCCCCCCCCEEEECCCCCCCCEEEEE
T ss_conf             99876411467654155324123334788777640201202444453201112200335553213754881665104432


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (360)
T d1w23a_         161 FPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPP  240 (360)
T ss_dssp             CCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSCTTCEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCC
T ss_pred             CCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             21463036986113453432243565542488504434457765046703434313445774200124543100013331


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~~~~~~~~~~~~l~~~G  320 (360)
T d1w23a_         241 TFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAKEQG  320 (360)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHHHHHHHHHHHHHTT
T ss_pred             CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf             20120015778777641004899999999999888887633520036888201640699998599735999999999789


Q ss_pred             ---------------------------------------C
Q ss_conf             ---------------------------------------9
Q 003496          278 ---------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------~  278 (815)
                                                             .
T Consensus       321 I~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~~~~~~~~~  360 (360)
T d1w23a_         321 FVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKENA  360 (360)
T ss_dssp             EESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf             8665077766717899508999999999999999998559

>d1xfia_ e.50.1.1 (A:) Hypothetical protein At2g17340 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Multi-domain proteins (alpha and beta)
fold: AF1104-like
superfamily: AF1104-like
family: AF1104-like
domain: Hypothetical protein At2g17340
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=0  Score=27115.14  Aligned_cols=1  Identities=100%  Similarity=0.138  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~v~~pll~~~~~~~y~~~tv~~~~~~~~~~~~~~~~~~Wl~~f~~~i~~~~~~A~s~~~~~da~~Ra~~f~~~y~~~L~   80 (360)
T d1xfia_           1 EMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRAESDITVPDAPARAEKFAERYAGILE   80 (360)
T ss_dssp             CCBCCTTSCSCCTTTCCSBCSCCCCTTSCTTSCCHHHHHHHHHHHTTHHHHHHHHHTCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             97566466774213766887788887555221526677999999977889999985089999889999999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~l~~~p~~~g~~~~~~ll~~~re~~Lr~~Gf~DpY~~~K~~eN~~Al~~lp~~~~~id~i~d~~~~l~~~vr~aiAGNif  160 (360)
T d1xfia_          81 DLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIF  160 (360)
T ss_dssp             HHHHCTTGGGCSCCHHHHHHHHHHHHHHTTCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99848765576017889999999999976999800999999999999987999999753016079999999999987764


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 D~Ga~~~~~~~~~~~~~~~~~~~~~~~rp~~vDd~d~~~~rl~~~~~k~vly~~DNaGe~Vfd~lL~~~rell~~g~~V~  240 (360)
T d1xfia_         161 DLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRGAQVV  240 (360)
T ss_dssp             ---------------CCHHHHTTCSCCSSCSEECHHHHHHHHTTTCCCEEEEECCBTTHHHHHTHHHHHHHHHHTTCEEE
T ss_pred             HCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             30220021444046426999999854589753669999998735775407999358734999887899999965898499


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 l~v~~~PilNDvT~~El~~~~~~~~~~~~~~~gld~~~~~Vv~sG~~~Pg~dL~~~s~E~~~~~~~aDLVI~KGMGr~~~  320 (360)
T d1xfia_         241 LAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGMGRGIE  320 (360)
T ss_dssp             EEEBSSCCTTBCBHHHHHHHHHHHC--CCEETTEECTTEEEEECCCCSSSCCTTSBCHHHHHHHTTCSEEEEESHHHHTT
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHCCHHHHHHHHCCCEEEECCCCCHHH
T ss_conf             99888752336249999999998751205765202135189657999887185768999999983699999828751132


Q ss_pred             ---------------------------------------C
Q ss_conf             ---------------------------------------9
Q 003496          278 ---------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------~  278 (815)
                                                             -
T Consensus       321 tN~~a~f~c~~lkL~~vK~~~vA~~lGg~~~d~V~k~~~~  360 (360)
T d1xfia_         321 TNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEV  360 (360)
T ss_dssp             BSTTCCCSSEEEEEEECCCHHHHHHHTCCTTCEEEEEECC
T ss_pred             CCCHHHCCCCEEHHHHHCCHHHHHHHCCCCCCEEEEECCC
T ss_conf             0101322788103334258999999499611279982479

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=100.00  E-value=0  Score=27114.96  Aligned_cols=1  Identities=0%  Similarity=-0.792  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~~~~~~~L~~lGl~~~i~~~~~~~   80 (360)
T d1pn0a1           1 TKYSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDM   80 (360)
T ss_dssp             CCEEEEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCC
T ss_pred             CCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCC
T ss_conf             99888788989989598999999998705332489868998689998868859998989999999869838999626776


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~dg~~s  160 (360)
T d1pn0a1          81 STIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAY  160 (360)
T ss_dssp             CEEEEEEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCC
T ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEEECCCC
T ss_conf             31599722667741112455543333344320253188999999999986165411356732563688638999605776


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (360)
T d1pn0a1         161 PVTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFEMI  240 (360)
T ss_dssp             CEEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCHHHHHHTCCCE
T ss_pred             CEEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCC
T ss_conf             35999998404566542331113787058866327765512456865302368888777631754332001011221110


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~l~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~  320 (360)
T d1pn0a1         241 VTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRL  320 (360)
T ss_dssp             ECSCSEETTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHTTCBCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHEEECCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             14444646928983675432050457887520889999999888876589738999999999999999999999999998


Q ss_pred             ---------------------------------------C
Q ss_conf             ---------------------------------------9
Q 003496          278 ---------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------~  278 (815)
                                                             .
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~G~~~~y~~  360 (360)
T d1pn0a1         321 FSGRPAKDVADEMGVSMDVFKEAFVKGNEFASGTAINYDE  360 (360)
T ss_dssp             HHSCBCSSTTCTTSBCHHHHHHHHHHHHHHHTTCCCCCCS
T ss_pred             HCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHEEECCCCCC
T ss_conf             7799368888860335587899999865554330766688

>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]}

class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: Patatin
domain: Patatin
species: Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]

Probab=100.00  E-value=0  Score=27112.00  Aligned_cols=1  Identities=0%  Similarity=-0.461  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~v~iLsldGGG~rG~~~~~vL~~L~~~~~~~~~~~~~~~~d~fD~i~GTS~Gaiia~~la~g~~~~~~~~~~~~~~~   80 (360)
T d1oxwa_           1 LGEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFAAAKEIVP   80 (360)
T ss_dssp             CCSCEEEEEECCCGGGGHHHHHHHHHHHHHHHHHTTCTTCCHHHHCSEEEECTHHHHHHHHHHSBCTTSSBSSCGGGHHH
T ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             99700899989878999999999999997497234667997142099999963999999999869970318999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~  160 (360)
T d1oxwa_          81 FYFEHGPQIFNPSGQILGPKYDGKYLMQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDIS  160 (360)
T ss_dssp             HHHHHHHHHTCCCCCSSSCSCCCHHHHHHHHHHHTTCBGGGCSSEEEEEEEETTTTEEEEEESSSTTTCGGGCCBHHHHH
T ss_pred             HHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCHHHHHH
T ss_conf             99861210100123346764546999999999958701332167532673015888748973644356886322698861


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~ASsA~P~~F~p~~~~~~~~~~~~~~~~~~Dgg~~~~nnp~~~a~~e~~~l~~~~~~~~~~~~~~~~~~~~~s~gtg~~~  240 (360)
T d1oxwa_         161 YSTAAAPTYFPPHYFVTNTSNGDEYEFNLVDGAVATVADPALLSISVATRLAQKDPAFASIRSLNYKKMLLLSLGTGTTS  240 (360)
T ss_dssp             HHHHCCTTTSCCEEEEEECTTSCEEEEEEEEGGGGTCSSCHHHHHHHHHHHTTTCGGGTTSTTCCGGGEEEEEECCCCBC
T ss_pred             HHHHCCCCCCCCEEEECCCCCCCCEEEEECCCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf             15513887778779732247787326774033542256726778999987624675322245677663155314666664


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~R~~~~~~~~~~~~lDd~s~~~l~~l~~  320 (360)
T d1oxwa_         241 EFDKTYTAKEAATWTAVHWMLVIQKMTDAASSYMTDYYLSTAFQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQ  320 (360)
T ss_dssp             TTSSCCCHHHHTTCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCGGGEEEECCCCBCGGGGCTTCCCHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             33333212442001167689999999876559999999999987447988479974886656541146899999999999


Q ss_pred             ---------------------------------------C
Q ss_conf             ---------------------------------------9
Q 003496          278 ---------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------~  278 (815)
                                                             .
T Consensus       321 ~g~~~~~~~~~~~~~~~~~~~L~~~~~~L~~er~~r~~~~  360 (360)
T d1oxwa_         321 VGENLLKKPVSEDNPETYEEALKRFAKLLSDRKKLRANKA  360 (360)
T ss_dssp             HHHHHHTSBSSSSCCCBHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999996330343066799999999999999998763059

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=100.00  E-value=0  Score=27111.94  Aligned_cols=1  Identities=0%  Similarity=-0.759  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 t~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (360)
T d1kdga1           1 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNPFWWCKDI   80 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCCTTBCTTB
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             95778998968899999999801879699998168987666543454422215764246763212211488755478655


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~G~~lGGsS~in~~~~~r~~~~D~~~~~gwp~~~~~l~py~~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g  160 (360)
T d1kdga1          81 TVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHAPYTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQG  160 (360)
T ss_dssp             SSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTCCGGGSCCHHHHHHHHHHSCCBSCCSTTSCCCSCHHHHHHHHHHHTTT
T ss_pred             CCCCEEEECCHHCCCCCCCCCCCHHHHEECCCCCCCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             43101220111011333112244022100246653333013444333202332110037886344422589999999853


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~g~~~~~~~~G~R~s~~~~yl~~a~~r~nl~i~t~~~V~rI~~d~~ra~GV~~~~~~~~~~~~~  240 (360)
T d1kdga1         161 YNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPNGFI  240 (360)
T ss_dssp             CEECCGGGSTTCCTTEEEECCBCEETTEECHHHHTHHHHHHTCTTEEEECSCCEEEEEEETTEEEEEEESCTTSSGGGEE
T ss_pred             CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCEEE
T ss_conf             16787455788544321000120135322322211356664266300104867999997299899999985236762489


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~v~a~~eVILsAGai~SP~LLl~SGIGp~~~L~~~gi~p~v~~~l~~~~~~~~~p~g~~~~~~~~~~~v~~~~~~~~g~~  320 (360)
T d1kdga1         241 PVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMTTIGSSPQSAVVDSNVKVFGTN  320 (360)
T ss_dssp             EEEEEEEEEECSHHHHHHHHHHHTTBSCHHHHHHHHTSHHHHHHSCCGGGCBCCCTTTTCBCSCTTTCSBCTTCBBTTCS
T ss_pred             EEEECCEEEEECHHHHCHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCEEEECCCCCCCCEECCCCEEECCC
T ss_conf             99979999993656747299986589955666775328643445546453133663200017897562777531463368


Q ss_pred             ---------------------------------------C
Q ss_conf             ---------------------------------------9
Q 003496          278 ---------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------~  278 (815)
                                                             +
T Consensus       321 ~l~~~~a~~~p~~~~~~~~~~~~~~ae~aa~~il~~~~~~  360 (360)
T d1kdga1         321 NLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKILALAGGP  360 (360)
T ss_dssp             SEEECSGGGCSSCCSSCSHHHHHHHHHHHHHHHHHSTTCC
T ss_pred             CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             8368854036545789977556588999998875204899

>d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: 2,6-dihydropseudooxynicotine hydrolase-like
domain: 2,6-dihydropseudooxynicotine hydrolase
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=100.00  E-value=0  Score=27112.46  Aligned_cols=1  Identities=0%  Similarity=-1.589  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~W~~~w~~~a~~~~~~a~~~~~~g~~~~A~~~~~~A~~~~~~a~~~~~   80 (360)
T d2jbwa1           1 KPEDEMDNWGRLILDGVSYSDMVGARDRPKEITWFDYWMSLANEYEQEAERKVALGHDLSAGELLMSAALCAQYAQFLWF   80 (360)
T ss_dssp             CHHHHHCCHHHHHHHTCCHHHHHHHHTCCTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             92658888776761797589998630689942799999999999999999999769987899999999999997356557


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~ip~dg~~l~g~l~~P~~~~~~P~Vi~~hG~~~~~e~~~~~~~~l~~~G~~  160 (360)
T d2jbwa1          81 DERRQKGQARKVELYQKAAPLLSPPAERHELVVDGIPMPVYVRIPEGPGPHPAVIMLGGLESTKEESFQMENLVLDRGMA  160 (360)
T ss_dssp             STHHHHHHHHHHHHHHHHGGGSSSCEEEEEEEETTEEEEEEEECCSSSCCEEEEEEECCSSCCTTTTHHHHHHHHHTTCE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCE
T ss_conf             93677899999999999986479873996357677666239993699999529999379876477899999999966998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 vl~~D~~G~G~s~~~~~~~~~~~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~pri~a~V~~~~~~~~~~  240 (360)
T d2jbwa1         161 TATFDGPGQGEMFEYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPRLAACISWGGFSDLDY  240 (360)
T ss_dssp             EEEECCTTSGGGTTTCCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCTTCCEEEEESCCSCSTT
T ss_pred             EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHH
T ss_conf             99971642223576555656699999999999996600155553423331050999987515987554999746555777


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~vp~~~~~~l~~~~~~~~~~l~~~~~g  320 (360)
T d2jbwa1         241 WDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDEVPLSFVDTVLELVPAEHLNLVVEKDG  320 (360)
T ss_dssp             GGGSCHHHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSSSCTHHHHHHHHHSCGGGEEEEEETTC
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             75433456677777506873577889877406645467527999899972999928999999999657998599997999


Q ss_pred             ---------------------------------------C
Q ss_conf             ---------------------------------------9
Q 003496          278 ---------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------~  278 (815)
                                                             -
T Consensus       321 ~H~~~~~~~~~~~~i~dWl~~~L~~g~~~apt~~~~p~~~  360 (360)
T d2jbwa1         321 DHCCHNLGIRPRLEMADWLYDVLVAGKKVAPTMKGWPLEH  360 (360)
T ss_dssp             CGGGGGGTTHHHHHHHHHHHHHHTSSCCCCCCEESCSCC-
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             9677767579999999999998314897899877788889

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=0  Score=27113.29  Aligned_cols=1  Identities=100%  Similarity=1.167  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~   80 (360)
T d1k32a3           1 SIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK   80 (360)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             CCCHHHCCCCCCCCCCEEEEEECCEEEEEECCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEE
T ss_conf             98601005146889999999989969999899994899169998888999899999999992899899999899994887


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~  160 (360)
T d1k32a3          81 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA  160 (360)
T ss_dssp             CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred             EECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCCCEEECCCCC
T ss_conf             50897127741211454321000111110000012221000000135520230121322566521233121100025654


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  240 (360)
T d1k32a3         161 IHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM  240 (360)
T ss_dssp             EEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGG
T ss_pred             EEEECCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCEECCCCC
T ss_conf             26630455713530354322110012577999999959985575333544023203641179852469601206877767


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~~  320 (360)
T d1k32a3         241 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDL  320 (360)
T ss_dssp             SCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEE
T ss_pred             CCCCCCEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE
T ss_conf             15531136526654001012476752675413898569999735997069996489987999979997498864886879


Q ss_pred             ---------------------------------------C
Q ss_conf             ---------------------------------------9
Q 003496          278 ---------------------------------------V  278 (815)
Q Consensus       278 ---------------------------------------~  278 (815)
                                                             -
T Consensus       321 ~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~~  360 (360)
T d1k32a3         321 RLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPLV  360 (360)
T ss_dssp             EECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSCEE
T ss_pred             EECCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCCCCC
T ss_conf             9999898999997899499999999985459984162259

>d4bcla_ b.75.1.1 (A:) Bacteriochlorophyll A protein {Prosthecochloris aestuarii, strain 2k [TaxId: 1102]}

class: All beta proteins
fold: Bacteriochlorophyll A protein
superfamily: Bacteriochlorophyll A protein
family: Bacteriochlorophyll A protein
domain: Bacteriochlorophyll A protein
species: Prosthecochloris aestuarii, strain 2k [TaxId: 1102]

Probab=100.00  E-value=0  Score=27048.28  Aligned_cols=1  Identities=0%  Similarity=-0.659  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 tTtA~~Dyeiileggssswg~vk~rakvNVP~a~pllp~dc~iKi~~Kpl~~~kgvVR~t~~ieSiVDstknkl~vE~DI   80 (359)
T d4bcla_           1 TTTAHSDYEIILEGGSSSWGQVKGRAKVNVPAAIPLLPTDCNIRIDAKPLDAQKGVVRFTTKIESVVDSVKNTLNVEVDI   80 (359)
T ss_dssp             CCEEEEEEEEEECCTTCCCEEEEEEEEECSCCCCSSCCEEEEEEEEEEECC---CCEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEHHHHHHHCCEEEEEEEE
T ss_conf             94212334789707876531023567603898777766666227620205776786999864045776401404899862


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ANEtkdrRiavGEG~vsVGdFSH~FsfEGsVvnl~YyRsdavrrNvpnp~ymqGrqfHDi~mkVPldn~dlIdTWe~~~~  160 (359)
T d4bcla_          81 ANETKDRRIAVGEGSLSVGDFSHSFSFEGSVVNMYYYRSDAVRRNIPNPIYMQGRQFHDILMKVPLDNNDLVDTWEGFQQ  160 (359)
T ss_dssp             EESSSSEEEEEEEEEEEETTEEEEEEEEEEEEEEESCCCHHHHTTCSSCCCCCEEEEEEEEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEECCCEEEECCCEEEEEEEEEEEEEEEECCHHHHHCCCCCEEECCCCHHHEEEECCCCCHHHHHHHHHHHH
T ss_conf             35787640673243387602224578620488999950146763599865552731100478558995568899999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 a~~~~~~nF~dwIrdfWfIGPa~~al~egGQ~is~I~v~~~~~e~g~k~pvgv~rwrfsh~gsgivdsisrw~elfp~d~  240 (359)
T d4bcla_         161 SISGGGANFGDWIREFWFIGPAFAAINEGGQRISPIVVNSSNVEGGEKGPVGVTRWKFSHAGSGVVDSISRWTELFPVEQ  240 (359)
T ss_dssp             HC---CCSHHHHHHHHHSTTTHHHHHHHTTEEECCCEEEEEEEECC---CEEEEEEEEEEEESSCCHHHHTTTTTCCGGG
T ss_pred             HHHCCCCCHHHHHHHHEEECHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCHHH
T ss_conf             87538974566556514522778888752730330799741025688787553267863787510226777887477634


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 l~~pa~ieg~frsdsqgievkvdg~lpgvsvdaggg~rrilnhpliplvHHGmvgk~n~f~vd~q~kv~lPkGyK~ryaA  320 (359)
T d4bcla_         241 LNKPASIEGGFRSDSQGIEVKVDGNLPGVSRDAGGGLRRILNHPLIPLVHHGMVGKFNDFTVDTQLKIVLPKGYKIRYAA  320 (359)
T ss_dssp             CSSCEEEEEEEEECSSCEEEEEEEEETTSEEEEETTEEEECCCCHHHHHHHTTTTTSSCCEEEEEEEEECCTTCEEEEEE
T ss_pred             CCCCCEECCCCCCCCCCEEEEEECCCCCEEECCCCCCHHHHCCCCCCEEECCCEECCCCCCEEEEEEEECCCCCEEEECC
T ss_conf             39850441454456774489982456860442788722441688620031230312577613368999726871676516


Q ss_pred             --------------------------------------C
Q ss_conf             --------------------------------------9
Q 003496          278 --------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------~  278 (815)
                                                            .
T Consensus       321 pqf~sqn~eey~wsGG~Ya~W~EhvCKGg~gqF~ilyaq  359 (359)
T d4bcla_         321 PQFRSQNLEEYRWSGGAYARWVEHVCKGGTGQFEVLYAQ  359 (359)
T ss_dssp             SCCSEEETTEEEEESHHHHHHHHHHHTTCCCCCEEEEEC
T ss_pred             CHHHHCCHHHEEECCCHHHHHHHHHHCCCCCCEEEEECC
T ss_conf             301001254368637147888875414887754788429

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=0  Score=27044.38  Aligned_cols=1  Identities=0%  Similarity=-1.259  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~~~~i~d~~~~A~~~lp~~~~~y~~gga~~~~t~~~N~~~Fd~i~l~pr~L~d~~~iDlst~~lG~~~~~P~~IspMtg   80 (359)
T d1goxa_           1 MEITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAM   80 (359)
T ss_dssp             CCCCSTTHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSCCBCCEEETTEEESSSEEECCCSC
T ss_pred             CCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEECCCCCCCCEEECCCCC
T ss_conf             95467999999999868888889870567741999999999984626331246887798755678835578615265323


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 g~~~~~~~e~~lA~aA~~~gi~~~~~s~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~vd~~~  160 (359)
T d1goxa_          81 QKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR  160 (359)
T ss_dssp             GGGTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSS
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf             46677864787656688629722334554565023677469984112222106778999999888754033442224102


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~kg~~~~~da~~  240 (359)
T d1goxa_         161 LGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARL  240 (359)
T ss_dssp             CCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCCSHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHH
T ss_conf             22344412442357853314566553036676556411799998513788999999999861566532200244688899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 a~~~g~~~~~vsnhggr~ld~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Di~KALaLGAd~vgigrp~L~~la~~g~  320 (359)
T d1goxa_         241 AVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGE  320 (359)
T ss_dssp             HHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHH
T ss_pred             HHHCCCCCEECCCCCCCCCCCCCCHHHHCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCH
T ss_conf             98706653220321110000000025445566503478621465057575778999998489989876899999984349


Q ss_pred             --------------------------------------C
Q ss_conf             --------------------------------------9
Q 003496          278 --------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------~  278 (815)
                                                            .
T Consensus       321 ~gv~~~i~~l~~EL~~~M~l~G~~~i~~L~~~~l~~~~~  359 (359)
T d1goxa_         321 AGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWD  359 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSBTTTCCGGGEEETTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHCCCCCC
T ss_conf             999999999999999999985899978959954657899

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=100.00  E-value=0  Score=27041.12  Aligned_cols=1  Identities=0%  Similarity=-1.259  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 m~~~~~l~M~gG~G~~SYa~NS~~Q~~~i~~~kp~leeai~~~~~~~~~~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~   80 (359)
T d1m6ex_           1 MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEEL   80 (359)
T ss_dssp             CCCHHHHCCCCCTTSTTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHH
T ss_pred             CCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf             98417603379998533999999999999998999999999624677899865999727899965799999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~  160 (359)
T d1m6ex_          81 RKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIE  160 (359)
T ss_dssp             HHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCC
T ss_pred             HHHCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHCCCCCCEEEEEEHHHHHHHHCCCCCCC
T ss_conf             98638999972899847888526799998463012678875898657722320178874577642003344303885445


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eG  240 (359)
T d1m6ex_         161 SNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEG  240 (359)
T ss_dssp             CCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTT
T ss_pred             CCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             78886797479998999999999999999999999998357857999985567898888863518999999999999859


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 lI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~~~~~~~~~~~~~~~~d~~~~~~~~a~~~RA~~e~~l~~hf  320 (359)
T d1m6ex_         241 LIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLDHF  320 (359)
T ss_dssp             CSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEEETTCCSSCTTCCSSTTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             98899997316842668889999885148975655447654154201223444565889999999999999999999985


Q ss_pred             --------------------------------------C
Q ss_conf             --------------------------------------9
Q 003496          278 --------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------~  278 (815)
                                                            .
T Consensus       321 g~~i~D~lF~r~~~~v~~~~~~~~~~~~~~~~sL~rK~~  359 (359)
T d1m6ex_         321 GEAIIEDVFHRYKLLIIERMSKEKTKFINVIVSLIRKSD  359 (359)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSSCCEEEEEEEEEEBCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCC
T ss_conf             828899999999999996076549953999999996689

>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: 2-methylacyl-CoA racemase Mcr
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=0  Score=27039.60  Aligned_cols=1  Identities=0%  Similarity=-0.925  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~gPL~girVld~~~~~agp~~~~~lad~GA~VikvE~p~~~~~~~~~~~nr~K~si~lDl~~~~g~~~~~~Lv~~aDv~i   80 (359)
T d1x74a1           1 AGPLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLI   80 (359)
T ss_dssp             CCTTTTCEEEEECCSTHHHHHHHHHHHTTCEEEEEECC-----CCCCGGGCSCEEEECCTTSHHHHHHHHHHHTTCSEEE
T ss_pred             CCCCCCCEEEECCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCEEE
T ss_conf             98999989998278308999999999839979998999999813456651898599972859899999999986689988


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~n~~pg~~~~lgl~~~~l~~~nP~lI~~sisgfG~~Gp~~~~~~~D~~~qA~sG~~~~~g~~~~~P~~~~~~~~d~~~g~  160 (359)
T d1x74a1          81 EGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPRSQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGS  160 (359)
T ss_dssp             ECSCTTHHHHHTCSHHHHHHHCTTCEEEEEESSCSSSTTTTSCCCHHHHHHHTSTGGGSSCTTSCCCCCTTCCCCCCTTH
T ss_pred             ECCCCCCHHHCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEHHHHHHHH
T ss_conf             66888736541898788776347816999968988898666565654455556622212789999878732189876799


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 l~aa~ailaAL~~R~~tG~Gq~VdvSl~ea~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~y~t~DG~~i~~~~~~  240 (359)
T d1x74a1         161 MFLLVGILAALWERQSSGKGQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAIE  240 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCEEEEEEHHHHHHHHTHHHHHHHHTTSCCSSTTCSTTTTCSTTEEEEECTTSCEEEEECCS
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEECC
T ss_conf             99999999999999856997486311167788877799999980798865688867666765476254788368996277


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~l~~d~~~~~~~~~~~~~~el~~~l~~~~~~~t~~e~~~~l~~~gvp~~pV~~~~ev~~dpq~~~r~~~~~  320 (359)
T d1x74a1         241 PQFYAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFASHDRDHWGAVFANSDACVTPVLAFGEVHNEPHIIERNTFYE  320 (359)
T ss_dssp             HHHHHHHHHHHTCCGGGSCCTTCGGGHHHHHHHHHHHHHTSCHHHHHHHTSSSSSCEEECCCHHHHTTCHHHHHTTCEEE
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCHHHHHHCCEEE
T ss_conf             78777654121201344321101444688899998776666489999999767970895289999874978897199998


Q ss_pred             --------------------------------------C
Q ss_conf             --------------------------------------9
Q 003496          278 --------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------~  278 (815)
                                                            .
T Consensus       321 ~~~~~~~~~~p~~s~tp~~~~~~P~lGeht~eIL~e~lG  359 (359)
T d1x74a1         321 ANGGWQPMPAPRFSRTASSQPRPPAATIDIEAVLTDWDG  359 (359)
T ss_dssp             CSSSEEECCSSEESSSCCCCCCCCCCCCCHHHHHHHHTC
T ss_pred             ECCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf             689114578878899998899999999789999997279

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=27038.96  Aligned_cols=1  Identities=0%  Similarity=-1.589  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~l~~~~~~~~~r~~d~~fa~~~~~~~~~~~~l~~al~s~~~~~Gh~cl~l~~l~~~~~~~~~~~~~~~~~~~~~~~   80 (359)
T d1w36d1           1 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNW   80 (359)
T ss_dssp             CTHHHHHHHHHTTSSCHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHTTCSEEETTTTTTGGGGSSSCCCCSSCCTTCSTH
T ss_pred             CHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCCHHHCCCCCHHHH
T ss_conf             96899999998183568999999998558985899999999999839997627999751200244430222155558999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~l~~~~~v~~~~~~~p~vl~~~~lyl~~~~~~E~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~A~~~a  160 (359)
T d1w36d1          81 EECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVA  160 (359)
T ss_dssp             HHHHHHSTTEESSSSCCSEEECSSEEEEHHHHHHHHHHHHHHTSCCBCCCCCHHHHHHHHHTTCCCTTSCCHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCCCCCCEEEECCEEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf             99987276656777888658778884047899999999999998637799983789999997465765663899999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 l~~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~~~~~~~~~~~~~~~~~t~~  240 (359)
T d1w36d1         161 LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLH  240 (359)
T ss_dssp             HTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCCCSCSCCCBTTT
T ss_pred             HCCCEEEEECCCCCCCEEHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             70885999768988752169999999999875269828984375999999998887777645810445542013455789


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~ll~~~~~~~~~~~~~~~~l~~d~lIIDEaSmv~~~l~~~ll~~~~~~~~lILvGD~~QLppV~~G~vl~dl~~~~~~~~  320 (359)
T d1w36d1         241 RLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGF  320 (359)
T ss_dssp             SCC-----------CTTSCCSCSEEEECSGGGCBHHHHHHHHHTCCTTCEEEEEECTTSGGGTSTTBCHHHHGGGGTTCC
T ss_pred             HHHHHHHCCHHHHHHHHCCCCCCEEEEHHHHCCCHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCHHHHHHHHHHCCC
T ss_conf             98763100067777543666541346533214489999999987259998999777221668788818999999773477


Q ss_pred             --------------------------------------C
Q ss_conf             --------------------------------------9
Q 003496          278 --------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------~  278 (815)
                                                            .
T Consensus       321 ~~~~~~~l~r~~~~~~~~~~~~~~~~i~d~l~~L~knyR  359 (359)
T d1w36d1         321 TAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR  359 (359)
T ss_dssp             CHHHHHHHHHHSSSCCCCCSTTTTHHHHTTEEECCCCCC
T ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCHHCCHHHCCCCCCC
T ss_conf             899999999985410001333334202172112545789

>d1yvra1 a.118.25.1 (A:5-363) 60-kda SS-aARo ribonucleoprotein {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TROVE domain-like
family: TROVE domain-like
domain: 60-kda SS-aARo ribonucleoprotein
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=100.00  E-value=0  Score=27038.66  Aligned_cols=1  Identities=0%  Similarity=0.303  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~q~~p~~~~qv~N~aGg~a~~~~~~~~L~rfl~~Gt~~~tyY~~~~~l~~e~~~~l~~l~~~~~~~~~v~~l~~~~~~g   80 (359)
T d1yvra1           1 MDQTQPLNEKQVPNSEGCYVWQVSDMNRLRRFLCFGSEGGTYYIEEKKLGQENAEALLRLIEDGKGCEVVQEIKTFSQEG   80 (359)
T ss_dssp             CCTTSCSSTTCEECTTSCEEEECCHHHHHHHHHHHCCTTCCSSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf             98777698211556667720369989999999961368986745826526889999999997278278999999998437


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~r~~p~l~aLal~a~~~d~~~r~~a~~~~~~v~r~~~~L~~fv~~~~~~~~~~~~~~~gr~lrkav~~Wy~~~~~~~L  160 (359)
T d1yvra1          81 RAAKQEPTLFALAVCSQCSDIKTKQAAFRAVPEVCRIPTHLFTFIQFKKDLKEGMKCGMWGRALRKAVSDWYNTKDALNL  160 (359)
T ss_dssp             CSSCSHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHTSCHHHH
T ss_pred             CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHH
T ss_conf             88784269999999986898889999999999996682189999999998536768786258999999999864998999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 A~~~~Ky~~r~gwShkDlLrl~Hpkp~~~~~~~l~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~  240 (359)
T d1yvra1         161 AMAVTKYKQRNGWSHKDLLRLSHIKPANEGLTMVAKYVSKGWKEVQEAYKEKELSPETEKVLKYLEATERVKRTKDELEI  240 (359)
T ss_dssp             HHHHTSCCCSSSCCHHHHHHHTTCCCSSHHHHHHHHHHHTCHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHTCCCHHHH
T ss_pred             HHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             99998517778997999999808999847899999999638511111134433660379999999999998715878889


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~lI~~~~Lt~E~~p~~~~~~~~vWeaLi~~mp~~ALLRNL~~l~~~gvl~~~~~~~~~V~~rL~D~~~l~~arihP~~~  320 (359)
T d1yvra1         241 IHLIDEYRLVREHLLTIHLKSKEIWKSLLQDMPLTALLRNLGKMTADSVLAPASSEVSSVCERLTNEKLLKKARIHPFHI  320 (359)
T ss_dssp             HHHHHHHCCCGGGSCTTGGGCHHHHHHHHHTCCHHHHHHHHHHHHHTTTTCTTCHHHHHHHHHHTCHHHHHHTTCCHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHCCCCHHHH
T ss_conf             99999728989870144316899999998718899999978877452567877278999999847999999725582999


Q ss_pred             --------------------------------------C
Q ss_conf             --------------------------------------9
Q 003496          278 --------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------~  278 (815)
                                                            -
T Consensus       321 L~A~~~Y~~g~~~~~~~~w~p~~~i~~AL~~A~~~sf~~  359 (359)
T d1yvra1         321 LVALETYKKGHGNRGKLRWIPDTSIVEALDNAFYKSFKL  359 (359)
T ss_dssp             HHHHHHHHHCC-----CCCCCCHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             999999984478666677788599999999999987079

>d2hrca1 c.92.1.1 (A:65-423) Ferrochelatase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Chelatase-like
superfamily: Chelatase
family: Ferrochelatase
domain: Ferrochelatase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=27036.65  Aligned_cols=1  Identities=0%  Similarity=-0.128  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~K~K~aVLl~n~G~P~s~~dv~~yL~~~~~d~~vi~~P~~~~l~~~i~~~r~~~~~~~Y~~igg~SPL~~~t~~q~~~l~   80 (359)
T d2hrca1           1 RKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRLTPKIQEQYRRIGGGSPIKIWTSKQGEGMV   80 (359)
T ss_dssp             CCCCEEEEEEECCCCSSGGGHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             99966999974799999789999999974799721163488888887411008899999863899922999999999988


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~L~~~~~~~~~~~v~~amry~~P~i~~~l~~l~~~G~~~iv~lPLyPqyS~sTtgs~~~~~~k~l~~~~~~~~~~~~~i  160 (359)
T d2hrca1          81 KLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTI  160 (359)
T ss_dssp             HHHHHHCGGGCSEEEEEEESSSSSBHHHHHHHHHHTTCSEEEEEESCSSCCTTTHHHHHHHHHHHHHHHTSCCSSEEEEE
T ss_pred             HHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             89876347665437998514355305889999985587440010155423412003226899999998541013566434


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~p~yi~a~a~~i~~~~~~~~~~~~~~~~llfS~HglP~~~~~~gdpY~~q~~~t~~~i~~~l~~~~~~~~~fQSr  240 (359)
T d2hrca1         161 DRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSK  240 (359)
T ss_dssp             CCCTTCHHHHHHHHHHHHHHHTTSCGGGTTTCEEEEEEECCBHHHHTTTCSHHHHHHHHHHHHHHHTTTCSCEEEEEECC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHEEEECC
T ss_conf             67788188999999999999972553357772699961123131454189517889999999998734430333244447


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~g~~~Wl~P~~~~~l~~l~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~~~~G~~~~~~vp~lN~~p~fi~~la~l  320 (359)
T d2hrca1         241 VGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADL  320 (359)
T ss_dssp             CSSSCBSSSBHHHHHHHHHHTTCCEEEEEECSCSSCCHHHHTTTTTHHHHHSCSSSCCSEEEECCCSTTCHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf             79976679858999999997499739998986566534679988899999999975996489827999998999999999


Q ss_pred             --------------------------------------C
Q ss_conf             --------------------------------------9
Q 003496          278 --------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------~  278 (815)
                                                            -
T Consensus       321 v~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~  359 (359)
T d2hrca1         321 VHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTSQQL  359 (359)
T ss_dssp             HHHHHHHTCSSCGGGGSCCTTCCCHHHHHHHHHHHTCCC
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC
T ss_conf             999864788777556888999887103888850053779

>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type B [TaxId: 5061]

Probab=100.00  E-value=0  Score=27035.78  Aligned_cols=1  Identities=0%  Similarity=-0.394  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 a~v~g~a~Gfa~~ttGG~~g~v~~Vtt~~eL~~al~~~~PriI~~~gtid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (359)
T d1qcxa_           1 AGVVGAAEGFAHGVTGGGSASPVYPTTTDELVSYLGDNEPRVIILDQTFDFTGTEGTETTTGCAPWGTASQCQVAINLHS   80 (359)
T ss_dssp             CCCCSCCCGGGTTCCTTTTCCCBCCCSHHHHHHHHHSSSCEEEEECSEEECTTTTCEEEEEEECTTCSSTTBCEEECGGG
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             98776676055688788897489938999999986289974999886681344556322334245554322222325332


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~i~v~sn~TI~G~g~~~~i~g~g~~~~~~~~NVIirnl~ir~~~~~~~~~~Dai~i~~  160 (359)
T d1qcxa_          81 WCDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQGTKGVIKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVDD  160 (359)
T ss_dssp             HHHHHCTTSCEEEEEEEGGGTSCEECCSSEEEEECTTCCEEESCCEEEETTCCCEEEESCEEEEECTTEETSCCSEEEES
T ss_pred             CCCCCCCCCCCEEEEEECCCCCEEEECCCCEEEECCCCEEEECCCEEEEECCCCEEEECEEEECCCCCCCCCCCEEEEEC
T ss_conf             22344556762035530267650784798749851588189746568886784489969098558777787897478617


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 s~nvwIDH~s~s~~~d~~~~~~~~~s~~vTvs~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~vT~hhN~~~~~~~R~P~~  240 (359)
T d1qcxa_         161 SDLVWIDHVTTARIGRQHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKV  240 (359)
T ss_dssp             CCCEEEESCEEEEESSCSEEECSSCCEEEEEESCEEECBCSSBTTSSSBBSCCEEECCSSEEEEEESCEEESBCSCTTEE
T ss_pred             CCCEEEEEEECCCCCCCCEEEECCCCCCEEEECCEECCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCCCCC
T ss_conf             88789982564456887537602677756865307616754101256567787400279861999925615887778606


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 r~g~~~hv~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~  320 (359)
T d1qcxa_         241 QGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVNVVVETPISGQLFSSPDANTNQQCASVFGRSCQLNAFGNSG  320 (359)
T ss_dssp             CSSEEEEEESCEEEEEEEEEEEECTTEEEEEESCEEEEEEEEECSSCSSEEECCCSHHHHGGGHHHHSSCCCCCEEESCC
T ss_pred             CCCCEEEEEEEEEECCCCEEEECCCCEEEEEEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             07844899941796767778824775189998158889887665564320304687554531245556400011335676


Q ss_pred             --------------------------------------C
Q ss_conf             --------------------------------------9
Q 003496          278 --------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------~  278 (815)
                                                            +
T Consensus       321 ~~~~~~~~~~~~~~~~~~~t~~~a~~v~~~V~~~AG~GK  359 (359)
T d1qcxa_         321 SMSGSDTSIISKFAGKTIAAAHPPGAIAQWTMKNAGQGK  359 (359)
T ss_dssp             CCCCBCGGGGGGGTTSCCCCCCCGGGHHHHHHHHSSTTC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf             314688530046677663576899999987775289999

>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type A [TaxId: 5061]

Probab=100.00  E-value=0  Score=27034.54  Aligned_cols=1  Identities=0%  Similarity=0.603  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~v~~~a~Gfa~~ttGG~~g~~~~Vtt~~eL~~al~~~~PriI~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (359)
T d1idka_           1 VGVSGSAEGFAKGVTGGGSATPVYPDTIDELVSYLGDDEARVIVLTKTFDFTDSEGTTTGTGCAPWGTASACQVAIDQDD   80 (359)
T ss_dssp             CCCCSCCCGGGTTCCTTTTCCCBCCCSHHHHHHHHHSSSCEEEEECSEEECTTTTCEEEEEEECTTCSSTTBCEEECGGG
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             97565574144578788897379938999999986289974999863480356644112333234565431101114443


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~i~v~sn~TI~G~g~~~~i~g~g~~i~~~~~NVIiRNl~i~~~~~~~~~~~DaI~i~~  160 (359)
T d1idka_          81 WCENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGSSGAIKGKGLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLDD  160 (359)
T ss_dssp             HHHHHSCCSCEEEEEEESSTTSCEEECSSEEEEECTTTCEEESCCEEECTTCEEEEEESCEEEEECTTEETSCCSEEECS
T ss_pred             CCCCCCCCCCCCEEEEECCCCCCEEECCCCEEEECCCCEEEECCCEEEEECCCEEEEECCEEECCCCCCCCCCCEEEEEC
T ss_conf             22235556763014532167770572799608861588499657468874682199979599568777787887588517


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 s~nVwIDH~s~s~~~d~~~~~~~~~s~~vTis~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vT~hhN~f~~~~~R~P~~  240 (359)
T d1idka_         161 CDLVWIDHVTTARIGRQHYVLGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKV  240 (359)
T ss_dssp             CEEEEEESCEEEEESSCSEEECCCTTCEEEEESCEEECBCSCBTTSSSBBSCCEEECCSSCEEEEESCEEESBCSCTTEE
T ss_pred             CCCEEEEEEEECCCCCCCEEEECCCCCCEEEECEEEECCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCCEE
T ss_conf             86489980060357788635610578726620406523312234566556687332289862899924981577888401


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 r~g~~~hv~NN~~~n~~~~~i~~~~~~~i~~e~N~F~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~  320 (359)
T d1idka_         241 QDNTLLHAVNNYWYDISGHAFEIGEGGYVLAEGNVFQNVDTVLETYEGEAFTVPSSTAGEVCSTYLGRDCVINGFGSSGT  320 (359)
T ss_dssp             CTTCEEEEESCEEEEEEEEEEEECTTCEEEEESCEEEEEEEEEEEESSEEECCSSTTGGGGGHHHHSSCCCCCEEESSCC
T ss_pred             CCCCEEEEECCEEECCCCEEEECCCCEEEEEECEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             34305999876997762557835775158996618867767754467723733567777421244476443113354664


Q ss_pred             --------------------------------------C
Q ss_conf             --------------------------------------9
Q 003496          278 --------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------~  278 (815)
                                                            -
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~a~~v~~~V~~nAG~Gkl  359 (359)
T d1idka_         321 FSEDSTSFLSDFEGKNIASASAYTSVASRVVANAGQGNL  359 (359)
T ss_dssp             CCCBCCTTGGGGTTSCCCCCCCGGGHHHHHHHHCSTTCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf             366776521355665545768878977766434898879

>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Iron-containing alcohol dehydrogenase
domain: Alcohol dehydrogenase TM0920
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=0  Score=27036.37  Aligned_cols=1  Identities=100%  Similarity=1.134  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~f~f~~P~~i~fG~g~l~~l~~~~~~~g~k~liV~~~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~~p~~~~v~~~~~   80 (359)
T d1o2da_           1 VWEFYMPTDVFFGEKILEKRGNIIDLLGKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVE   80 (359)
T ss_dssp             CCCCCCCCEEEESTTHHHHHGGGGGGTCSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHH
T ss_pred             CEECCCCCEEEEECCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf             93737999899948999999999997599589998586888740999999999876984999757468979899987642


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~D~IIavGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtgse~t~~avi~~~~~~~k~~  160 (359)
T d1o2da_          81 RYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGTGSEVTPYSILTDPEGNKRGC  160 (359)
T ss_dssp             HHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCCCGGGCCEEEEECTTSCEEEE
T ss_pred             HCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEEEECCCCCCCHHCCCHHHHHHHHHCCCCC
T ss_conf             00135775688516642001899999998489971331167534457787588426455422114214545675500102


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~P~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~E~~~s~~~~~~~~~~a~~ai~~~~~~l~~~~~~~~~a~~~l~~as  240 (359)
T d1o2da_         161 TLMFPVYAFLDPRYTYSMSDELTLSTGVDALSHAVEGYLSRKSTPPSDALAIEAMKIIHRNLPKAIEGNREARKKMFVAS  240 (359)
T ss_dssp             ECCCCSEEEECGGGGGGCCHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             35778768860754058534445665317999988876400255156688999999999876532104699999877899


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~g~a~~~~g~g~~Hai~h~l~~~~~i~HG~~~ai~lp~v~~~~~~~~~ek~~~ia~~lg~~~~~~~~~lglp~~lg~~  320 (359)
T d1o2da_         241 CLAGMVIAQTGTTLAHALGYPLTTEKGIKHGKATGMVLPFVMEVMKEEIPEKVDTVNHIFGGSLLKFLKELGLYEKVAVS  320 (359)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTTCHHHHHHHTTCCCCCCCC
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             99987551678644410245213303877412578879999999998759999999999889999999985991005979


Q ss_pred             --------------------------------------C
Q ss_conf             --------------------------------------9
Q 003496          278 --------------------------------------V  278 (815)
Q Consensus       278 --------------------------------------~  278 (815)
                                                            -
T Consensus       321 ~~~i~~~~~~a~~~~~~~~np~~~t~e~i~~il~~alg~  359 (359)
T d1o2da_         321 SEELEKWVEKGSRAKHLKNTPGTFTPEKIRNIYREALGV  359 (359)
T ss_dssp             HHHHHHHHHHHTTCGGGGGSSSCCCHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             999999999987385021899468999999999987669

>d2hdsa1 e.3.1.1 (A:4-361) AMPC beta-Lactamase, class C {Escherichia coli, cephalosporinase [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: AMPC beta-Lactamase, class C
species: Escherichia coli, cephalosporinase [TaxId: 562]

Probab=100.00  E-value=0  Score=26960.63  Aligned_cols=1  Identities=0%  Similarity=-0.327  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~p~~~~~~v~~~i~~~~~~~~ipG~~v~v~~~g~~~~~~~G~~~~~~~~~~~~dt~f~iaS~tK~~ta~~i~~lv~~G~l   80 (358)
T d2hdsa1           1 APQQINDIVHRTITPLIEQQKIPGMAVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEI   80 (358)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHTTSC
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf             96789999999999999838998699999999999999688602566988999997863045999999999999755986


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~ld~~v~~ylp~~~~~~~~~iTir~LLshtsG~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~Ysn~~~~llg~iie  160 (358)
T d2hdsa1          81 KLSDPTTKYWPELTAKQWNGITLLHLATYTAGGLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAV  160 (358)
T ss_dssp             CTTSBHHHHCTTCCCGGGTTCBHHHHHHTCSSCCCSSCCTTCCSHHHHHHHHHHCCCSSCTTSEECCCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHH
T ss_conf             42300010000002321101455665026768980430121222089999876175335898426743541110013231


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~tg~~~~~~~~~~i~~PLgm~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aggl~st~~Dla~f~~~~l~~~~~  240 (358)
T d2hdsa1         161 KPSGLSFEQAMQTRVFQPLKLNHTWINVPPAEEKNYAWGYREGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLKPLDI  240 (358)
T ss_dssp             GGGTSCHHHHHHHHTTTTTTCTTEESSCCGGGGGGBCCEEETTEEECCCCCTTHHHHTCCEECHHHHHHHHHHHHCGGGC
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHCCCCC
T ss_conf             13699821202667775059642527898467315102433686412344545578764623899999999998589987


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~G~~~G~~  320 (358)
T d2hdsa1         241 NEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDNKIALAARPVKAITPPTPAVRASWVHKTGATGGFG  320 (358)
T ss_dssp             SSHHHHHHHHHHTSEEEEETTEEECSSCEEEESSCCTHHHHTSTTSSSSCCCEECEEEEEEECCCSSEEEEEEEEETTEE
T ss_pred             CHHHHHHHHHHHHCEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHH
T ss_conf             86888888877632302368766555402035667753234676655211234444556777777850797345267425


Q ss_pred             -------------------------------------C
Q ss_conf             -------------------------------------9
Q 003496          278 -------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------~  278 (815)
                                                           .
T Consensus       321 s~~~~~Pe~~~~ivvltN~~~~~~~~~~~~~~il~al~  358 (358)
T d2hdsa1         321 SYVAFIPEKELGIVMLANKNYPNPARVDAAWQILNALQ  358 (358)
T ss_dssp             EEEEEEGGGTEEEEEEESBCCCHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             89999987997999997799998789999999999759

>d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase, catalytic domain {Alcaligenes faecalis [TaxId: 511]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: D-aminoacylase, catalytic domain
domain: N-acyl-D-aminoacid amidohydrolase, catalytic domain
species: Alcaligenes faecalis [TaxId: 511]

Probab=100.00  E-value=0  Score=26959.89  Aligned_cols=1  Identities=0%  Similarity=-1.754  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 GFID~HtH~D~~~~~~p~~~~~~~~GVTT~v~GncG~s~aP~~~~~~~~~~~~l~~g~~~~w~t~~eyl~~le~~~~~~N   80 (358)
T d1m7ja3           1 GFIDSHTHDDNYLLKHRDMTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLEALRAAPPAVN   80 (358)
T ss_dssp             CEEESSCCCTTHHHHCTTCHHHHTTTEEEEEESCTTCCSCSEECSSCCTTGGGGCSSSCCEESSHHHHHHHHHHSCCSSE
T ss_pred             CCEECCCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf             92522788845532597986414699764888177777145775442005778504777686789999999973587654


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 va~~vgH~~lR~~vmg~~~~~at~~ei~~M~~ll~eal~~GA~G~Stgl~y~P~~~A~~~El~~lak~~~~~g~~~~~h~  160 (358)
T d1m7ja3          81 AACMVGHSTLRAAVMPDLRREATADEIQAMQALADDALASGAIGISTGAFYPPAAHASTEEIIEVCRPLITHGGVYATHM  160 (358)
T ss_dssp             EEEEEEHHHHHHHHCSCCSSCCCHHHHHHHHHHHHHHHHHTCCEEEEETTSGGGTTCCHHHHHHHHTHHHHHTCEEEEEC
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             03541455554415583023578899999999999999658765235775441035898999999988886098346653


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 r~~~~~~~~~~~e~~~~a~~~g~~~~ish~~~~~~~~~~~~~~~~~~~~~a~~G~~i~~d~yPy~ag~t~l~~~~~~~~~  240 (358)
T d1m7ja3         161 RDEGEHIVQALEETFRIGRELDVPVVISHHKVMGKLNFGRSKETLALIEAAMASQDVSLDAYPYVAGSTMLKQDRVLLAG  240 (358)
T ss_dssp             SCSSTTHHHHHHHHHHHHHHHTSCEEECSCCCCSGGGTTTHHHHHHHHHHHHHHSCEEEEECSCSCEEEECCCCTTTTSS
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHCC
T ss_conf             25663178888999999997298657513345777652568999999999863798641215854134522234444133


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~G~~l~eiA~~~g~~p~d~~~dl~~~~~~~~~~~e~~v~~~l~~p~~~igSDgga~~~~~hpr~~gt  320 (358)
T d1m7ja3         241 RTLITWCKPYPELSGRDLEEIAAERGKSKYDVVPELQPAGAIYFMMDEPDVQRILAFGPTMIGSDGLPHDERPHPRLWGT  320 (358)
T ss_dssp             CEEEEEESSCGGGTTCBHHHHHHHTTSCHHHHHHHHCSEEEEECCCCHHHHHHHHHSTTEEECCCCCTTCSSCCTHHHHH
T ss_pred             CHHHHCCCCCHHHCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf             30110266676542574999998839987887888742210010589999999983999228767665789958888661


Q ss_pred             -------------------------------------C
Q ss_conf             -------------------------------------9
Q 003496          278 -------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------~  278 (815)
                                                           .
T Consensus       321 f~r~L~~~vRe~~~lsLeeAI~k~T~~pA~~~Gl~dRG  358 (358)
T d1m7ja3         321 FPRVLGHYSRDLGLFPLETAVWKMTGLTAAKFGLAERG  358 (358)
T ss_dssp             HHHHHCCCCCCTCSSCHHHHHHTTTHHHHHHHTCTTCS
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             89999999567881789999999987999983987899

>d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase
domain: Carboxylesterase
species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]

Probab=100.00  E-value=0  Score=26958.53  Aligned_cols=1  Identities=0%  Similarity=-1.690  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~dpr~dP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~   80 (358)
T d1jkma_           1 PGRLGDESSGPRTDPRFSPAMVEALATFGLDAVAAAPPVSASDDLPTVLAAVGASHDGFQAVYDSIALDLPTDRDDVETS   80 (358)
T ss_dssp             CHHHHCTTCCTTTCTTSCHHHHHHHHTTTTTSCCCCCSSCTTSCHHHHHHHHHHHHHHHHHHHHHSCCCCTTCCCCEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf             99888987786779998999999997536665677998783315599999987647999988755454269988885079


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~i~~~dg~~i~~~iy~P~~~~~~~Pviv~~HGGG~~~gs~~~~~~~~~~~~la~~g~~VvsvdYRla~~~~pe~~~p~  160 (358)
T d1jkma_          81 TETILGVDGNEITLHVFRPAGVEGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWTAEGHHPFPS  160 (358)
T ss_dssp             EEEEECTTSCEEEEEEEEETTCCSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSEETTEECCTTH
T ss_pred             EEEEECCCCCEEEEEEEECCCCCCCCCEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCH
T ss_conf             99996789988899999417888898749996387104066542221067888875100133000001246565677733


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  240 (358)
T d1jkma_         161 GVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISGGYAWDHERRLTELPSL  240 (358)
T ss_dssp             HHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCCCCTTSCHHHHHHHCTHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCHHHCCCCCCH
T ss_conf             56777888889987232468754034444672679999999976527876542223455211366576411110234210


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~lPp~li~~g~~D~l~~e~~~~~~~L~~aGv~v~~~~  320 (358)
T d1jkma_         241 VENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNELDPLRDEGIAFARRLARAGVDVAARV  320 (358)
T ss_dssp             HHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCCCEEEEEETTCTTHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             00234445516666677642775577457300234530110258999899987887787999999999998799589999


Q ss_pred             -------------------------------------C
Q ss_conf             -------------------------------------9
Q 003496          278 -------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------~  278 (815)
                                                           .
T Consensus       321 ~~g~~Hgf~~~~~~~~~~~~~~~~~~i~~Fl~~~~~~~  358 (358)
T d1jkma_         321 NIGLVHGADVIFRHWLPAALESTVRDVAGFAADRARLR  358 (358)
T ss_dssp             ETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ECCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             79896463542466697899999999999999897569

>d1dosa_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Fructose-bisphosphate aldolase (FBP aldolase)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=26957.94  Aligned_cols=1  Identities=0%  Similarity=0.636  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~v~t~~nlk~~L~~A~~~~yAV~AfNv~n~e~~~Aii~AAee~~sPvIlq~s~g~~~y~gg~~~~~~~~~~   80 (358)
T d1dosa_           1 SKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQG   80 (358)
T ss_dssp             CCGGGTCCSEECCTHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHHTCCEEEEECHHHHHHHHCTTSCCCSTTH
T ss_pred             CCHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCHHHHHHHH
T ss_conf             94663346776757999999999998795699878698999999999999968998999061688770764156668767


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~a~~v~~~a~~~~VPV~lHLDHg~~~~~~~i~~~idag~~~~~~~~~~gfsSVMiDgS~l~~eeNi~~Tk~v  160 (358)
T d1dosa_          81 AAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKY  160 (358)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCSCSEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             88888898999999999837997899657652146778887788899999982777776556778857789999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ve~Ah~~gv~VEaElG~igg~Edg~~~~~~~~~~~~T~peea~~~~~ef~~~tgvD~LAvaiGt~HG~Yk~~~~~l~p~l  240 (358)
T d1dosa_         161 LERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKAGNVVLTPTI  240 (358)
T ss_dssp             HHHHHHTTCEEEEECCCCCCCCCCCSCCCCCCCCCSCCHHHHHHHHHHHHTTCSCEEEECCSSCCCSSCCCSCCCCCTHH
T ss_pred             HHHHHHHCCEEEEEEEEEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCCCCCCCCHH
T ss_conf             99985537768984336404567753210102330599899999999876467651565432614553478876677014


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~i~~~~~vp~~~~~LVlHGgSGip~e~i~~ai~~GV~KiNi~Tdlr~a~~~~ir~~~~~n~~~~~~~~~~~~~~  320 (358)
T d1dosa_         241 LRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGE  320 (358)
T ss_dssp             HHHHHHHHHHHHTCCTTCSCEEECSCTTCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHHGGGSSSSEEETTEE
T ss_pred             HHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCC
T ss_conf             69999999987289986534120588897688999999819848961719999999999999984846541113675444


Q ss_pred             -------------------------------------C
Q ss_conf             -------------------------------------9
Q 003496          278 -------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------~  278 (815)
                                                           -
T Consensus       321 ~~~~k~~fDPrk~l~~a~~am~~~v~~~~~~fgs~nkl  358 (358)
T d1dosa_         321 DQPNKKYYDPRVWLRAGQTSMIARLEKAFQELNAIDVL  358 (358)
T ss_dssp             EEECHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             57777767908889999999999999999982897779

>d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endocellulase E1
species: Acidothermus cellulolyticus [TaxId: 28049]

Probab=100.00  E-value=0  Score=26957.73  Aligned_cols=1  Identities=100%  Similarity=1.300  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~g~l~~~G~~~~d~~G~~~~l~GvN~~g~~~~~~~~~~~~~~~~~~~~~~i~~~G~N~VRlpv~~~~~~~~~~~~~~~   80 (358)
T d1ecea_           1 AGGGYWHTSGREILDANNVPVRIAGINWFGFETCNYVVHGLWSRDYRSMLDQIKSLGYNTIRLPYSDDILKPGTMPNSIN   80 (358)
T ss_dssp             CCCSCCEEETTEEECTTSCEECCEEEECCCBTTTTCSCTTTTTSCHHHHHHHHHHTTCCEEEEEEEGGGGSTTCCCCSCC
T ss_pred             CCCCEEEEECCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCHHHCCCCCCCCCCC
T ss_conf             99970996099799999989999987667411345666667724799999999976998899347688746877777755


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~ld~~v~~a~~~Gl~Vildlh~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~~el~  160 (358)
T d1ecea_          81 FYQMNQDLQGLTSLQVMDKIVAYAGQIGLRIILDRHRPDCSGQSALWYTSSVSEATWISDLQALAQRYKGNPTVVGFDLH  160 (358)
T ss_dssp             CSSSCTTTTTCCHHHHHHHHHHHHHHTTCEEEEEEEESBTTBCCSSSCCSSSCHHHHHHHHHHHHHHTTTCTTEEEEECS
T ss_pred             CCCCCHHHHCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             33368111011699999999999997899066401356666888655688277999999999998864476536755320


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 NEP~~~~~~~~~~~~~~~~~~~~~~~~~Ir~~d~~~~v~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~H~Y  240 (358)
T d1ecea_         161 NEPHDPACWGCGDPSIDWRLAAERAGNAVLSVNPNLLIFVEGVQSYNGDSYWWGGNLQGAGQYPVVLNVPNRLVYSAHDY  240 (358)
T ss_dssp             SCCCTTCBSSCCCTTTBHHHHHHHHHHHHHHHCTTSEEEEECBSEETTEECSTTTBCTTTTTSCCCCSSSSCEEEEEECC
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEEEEEEC
T ss_conf             33456776775413455899999999999850899589996546676665322566430432776678667658986414


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~igEfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~W~  320 (358)
T d1ecea_         241 ATSVYPQTWFSDPTFPNNMPGIWNKNWGYLFNQNIAPVWLGEFGTTLQSTTDQTWLKTLVQYLRPTAQYGADSFQWTFWS  320 (358)
T ss_dssp             CTTTCCCGGGSCTTTTTTHHHHHHHHTHHHHHTTSSCEEEEECCCCCCSHHHHHHHHHHHHHTCCHHHHTTSSCEEEESC
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             78767753456630356677788889999998459709992678888999869999999999999998540181699973


Q ss_pred             -------------------------------------C
Q ss_conf             -------------------------------------9
Q 003496          278 -------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------~  278 (815)
                                                           -
T Consensus       321 ~k~~~~~~~G~~~~dw~~~~~~~~~~i~~~~~~~~~~~  358 (358)
T d1ecea_         321 WNPDSGDTGGILKDDWQTVDTVKDGYLAPIKSSIFDPV  358 (358)
T ss_dssp             SCSCCTTTCCSBCTTSSSBCHHHHHHHGGGCCCCCCCC
T ss_pred             CCCCCCCCCCEECCCCCCCCHHHHHHCCCCCCCCCCCC
T ss_conf             77777887640169888878366532030213568989

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=26960.10  Aligned_cols=1  Identities=100%  Similarity=0.138  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 dRv~P~C~~f~~CGGC~~qh~~y~~Ql~~K~~~l~~~~~~~~~~v~~~~p~~YR~r~~~~v~~~~~~~~~~~Gf~~~~s~   80 (358)
T d1uwva2           1 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSS   80 (358)
T ss_dssp             TBCCCSCTTTTTBTTCSCTTBCHHHHHHHHHHHHHHHHTSCCCEEECCCSSSCBSEEEEEEEEETTTTEEEEEEEBTTSS
T ss_pred             CCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCC
T ss_conf             98898999999485861008999999999999999862765676657888777415999845765889569989735884


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~iV~i~~C~i~~~~i~~~l~~lr~~l~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  160 (358)
T d1uwva2          81 DIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAP  160 (358)
T ss_dssp             CEEECSCCTTBCHHHHHHHHHHHHHHTTCGGGGGEEEEEEEEETTEEEEEEEESSCCCHHHHHHHHHHHHHHTCEEEEES
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             06614125145577999999988754033445520399999831880899995266677789999975311363899940


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~g~~~~~~~~g~~~~i~p~sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gv  240 (358)
T d1uwva2         161 DSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGV  240 (358)
T ss_dssp             SSSCCEEEECCCCEEEETTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEE
T ss_pred             CCEEEEEECCCCEEEECCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHCCCCCCEEEEC
T ss_conf             43367762487248960888999877133003303446779889875246788449995366665521003565279822


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 E~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~l~~~~~~~ivYVSCnp~Tl  320 (358)
T d1uwva2         241 EGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATL  320 (358)
T ss_dssp             ESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCCHHHHHHHHHHCCSEEEEEESCHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf             47499999999848755324621342204543234455404675599679973479999999974999899992898998


Q ss_pred             -------------------------------------C
Q ss_conf             -------------------------------------9
Q 003496          278 -------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------~  278 (815)
                                                           -
T Consensus       321 aRDl~~l~~~gy~l~~i~~~D~FP~T~HvE~v~~l~Rv  358 (358)
T d1uwva2         321 ARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV  358 (358)
T ss_dssp             HHHHHHHHHTTCEEEEEEEECCSTTSSCCEEEEEEEC-
T ss_pred             HHHHHHHHHCCCEEEEEEEEECCCCCCCEEEEEEEEEC
T ss_conf             87799998779767599997359998618999999969

>d1edqa2 c.1.8.5 (A:133-443,A:517-563) Chitinase A, catalytic domain {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Type II chitinase
domain: Chitinase A, catalytic domain
species: Serratia marcescens [TaxId: 615]

Probab=100.00  E-value=0  Score=26955.78  Aligned_cols=1  Identities=0%  Similarity=-0.659  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~Yy~~W~~y~~~~~~~~I~~~~~THi~YAFa~v~~~~~~~~~~~~~~~~~~   80 (358)
T d1edqa2           1 TDGSHLAPLKEPLLEKNKPYKQNSGKVVGSYFVEWGVYGRNFTVDKIPAQNLTHLLYGFIPICGGNGINDSLKEIEGSFQ   80 (358)
T ss_dssp             TTCTTSCCCCCCCCTTCCCBCCCSSCEEEEEEEGGGGSTTCCCGGGSCGGGCSEEEEEEECBCCCTTTSGGGGGSTTHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHCCHHHCCEEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf             99754688779778889888789998999995952023899992469986797699950772698874654222333222


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~LK~~~p~lKvllSiGGw~~s~~~~~~a~~~~R~~  160 (358)
T d1edqa2          81 ALQRSCQGREDFKVSIHDPFAALQKAQKGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKVKRDR  160 (358)
T ss_dssp             HHHHHTTTCCTTSBCCSCHHHHHTSCBTTBCSTTCSSCHHHHHHHHHHHHCTTCEEEEEEECSSSCGGGGGTTSHHHHHH
T ss_pred             CCCCCCCCCCCCCEEECCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHH
T ss_conf             22224466777615612714432033467664344344289999999974899769999989987888602358789999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 Fi~svv~~l~~y~~fDGIDIDWEyP~~~g~~~~~~~~~D~~nf~~Ll~eLR~~l~~~~~~~~~~~~ls~a~~~~~~~~~~  240 (358)
T d1edqa2         161 FVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDK  240 (358)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEECSCTTSCSSCTTCCCTTHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECSHHHHTT
T ss_pred             HHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHH
T ss_conf             99999999998353786131124323345778778978998999999999999887643317742025650476445413


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~l~~~vD~inlMtYD~~G~w~~~~~g~~t~l~~~~~~~~~~~~v~~~v~~~~~~Gvp~~KlvlGip~YGRs~~~K~  320 (358)
T d1edqa2         241 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGKIVVGTAMDARSVQAKG  320 (358)
T ss_dssp             SCHHHHGGGCSEEEEECCCSSCTTCSSSCCCSSCSSCCTTCTTCSCCHHHHHHHHHHHTCCGGGEEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHH
T ss_conf             21777863378898860245577787887877888887667877652999999999878998896999685479999887


Q ss_pred             -------------------------------------C
Q ss_conf             -------------------------------------9
Q 003496          278 -------------------------------------V  278 (815)
Q Consensus       278 -------------------------------------~  278 (815)
                                                           .
T Consensus       321 ~y~~~~~lgG~~~W~~~~D~g~ll~a~~~~l~~~~~~~  358 (358)
T d1edqa2         321 KYVLDKQLGGLFSWEIDADNGDILNSMNASLGNSAGVQ  358 (358)
T ss_dssp             HHHHHHTCCEEEEECGGGCCSHHHHHHHHHTTCCBSCC
T ss_pred             HHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf             78862897439887156786289999998647854679

>d2qapa1 c.1.10.1 (A:1-357) Fructose-1,6-bisphosphate aldolase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Fructose-1,6-bisphosphate aldolase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=100.00  E-value=0  Score=26888.55  Aligned_cols=1  Identities=0%  Similarity=-1.259  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~el~~~a~~~~~~GKGilAADeS~gT~~Krl~~iGventEenr~~~R~~l~tsp~~~~   80 (357)
T d2qapa1           1 MSRVTVLQSQLPAYNRLKTPYESELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRALMLEAEGFEQ   80 (357)
T ss_dssp             CCEEEEEGGGSGGGCSCCCTTHHHHHHHHHHHTCTTCEEEEECCCTTTHHHHHGGGTCCCCHHHHHHHHHHHHTCTTGGG
T ss_pred             CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHH
T ss_conf             96121111037775445847899999999998079986998358998277789876999978999999998847987555


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~IsGvILfeeTm~q~~~~g~~~~~ll~~kGIVPgIKVDkGl~~~~~G~~~ek~t~gLD~L~~R~~ey~~~Ga~faKwRsV  160 (357)
T d2qapa1          81 YISGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQMTEGLDGYVKRASAYYKKGCRFCKWRNV  160 (357)
T ss_dssp             TEEEEEECHHHHTCBCTTSSBHHHHHHHTTCEEEEECCCCEEECSSSSTTCEEECCCTTHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CEEEEEECHHHHHHHCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEECCCCHHC
T ss_conf             44689812898732302799779999847981544247751478789974642625677999877754233300310100


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 i~i~~~~ps~~~I~~na~~laryA~i~q~~GLVPIVEPEVlidg~h~~e~~~~vte~vl~~~~~~l~~~~V~Leg~lLKp  240 (357)
T d2qapa1         161 YKIQNGTVSESAVRFNAETLARYAILSQMSGLVPIVEPEVMIDGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKP  240 (357)
T ss_dssp             ECCBTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEECC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             43666775044466568999999999997497631051233224564688899999999999998875314445776543


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 nMv~~G~~~~~~~~~e~va~~tv~~l~~tvP~~VpgIvfLSGGqS~eeAt~~LnaiN~~~~~~pw~lsfSfsRALQ~s~L  320 (357)
T d2qapa1         241 NMVVPGAESGKTAAPEQVAHYTVMTLARTMPAMLPGVMFLSGGLSEVQASEYLNAINNSPLPRPYFLSFSYARALQSSAL  320 (357)
T ss_dssp             CCCCCCTTSSCCCCHHHHHHHHHHHHHHHSBTTCCEEEECCTTCCHHHHHHHHHHHTTCCSCCCSEEEEEESHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHH
T ss_conf             42224543345688556302356665214797787113147886789999999997424578998589863397608999


Q ss_pred             ------------------------------------C
Q ss_conf             ------------------------------------9
Q 003496          278 ------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------~  278 (815)
                                                          .
T Consensus       321 k~W~g~~env~~aQ~~~~~Ra~~ns~A~~G~y~~~~e  357 (357)
T d2qapa1         321 KAWGGKESGLAAGRRAFLHRARMNSMAQLGKYKRSDD  357 (357)
T ss_dssp             HHHTTSGGGHHHHHHHHHHHHHHHHHHHTTCCCGGGC
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             9857974639999999999999868986688687789

>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide phosphodiesterase 1b, PDE1B {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: PDEase
domain: Catalytic domain of cyclic nucleotide phosphodiesterase 1b, PDE1B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=26888.52  Aligned_cols=1  Identities=0%  Similarity=-0.327  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~w~Fd~f~l~~~~~~~~L~~~~~~if~~~~l~~~f~i~~~~l~~Fl~~v~~~Y~~~~nPYHN~   80 (357)
T d1taza_           1 VGPTYSTAVLNCLKNLDLWCFDVFSLNQAADDHALRTIVFELLTRHNLISRFKIPTVFLMSFLDALETGYGKYKNPYHNQ   80 (357)
T ss_dssp             CCCCCCHHHHHHHTTTTSTTCCHHHHHHHTTSCHHHHHHHHHHHHTTHHHHTTCCHHHHHHHHHHHHHHHTTTCCSSSSH
T ss_pred             CCCCCCHHHHHHHHCCCCCCCCCHHCCHHCCCCHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf             99889899999986455699980130101389829999999999878376439899999999999998457789875359


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~HA~dV~q~~~~lL~~~~~~~~l~~~E~~alliAal~HD~~HpG~~N~flv~s~~~LA~lYnd~SvLEnhH~~~~~~lL~  160 (357)
T d1taza_          81 IHAADVTQTVHCFLLRTGMVHCLSEIELLAIIFAAAIHDYEHTGTTNSFHIQTKSECAIVYNDRSVLENHHISSVFRLMQ  160 (357)
T ss_dssp             HHHHHHHHHHHHHHHHHSGGGGSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHHTCHHHHHHTTSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf             99999999999999635632338999999999999988248899635799863887888639987789999999999980


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~i~~~l~~~~~~~~r~~ii~~ILaTDm~~H~~~l~~~~~~~~~~~~~~r~~~~~~lik~ADis~~~rp~~~~~~W~  240 (357)
T d1taza_         161 DDEMNIFINLTKDEFVELRALVIEMVLATDMSCHFQQVKTMKTALQQLERIDKPKALSLLLHAADISHPTKQWLVHSRWT  240 (357)
T ss_dssp             SGGGCTTTTSCHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTCGGGSCHHHHHHHH
T ss_pred             CCCHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf             61000103899899999999999998222267689999999999974114109999999998623554236779999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~l~~Ef~~Qgd~E~~~gl~~sp~~dr~~~~~~~~QigFi~~iv~Plf~~l~~~~p~~~~p~~~~~~~n~~~~~~~~~~~  320 (357)
T d1taza_         241 KALMEEFFRQGDKEAELGLPFSPLCDRTSTLVAQSQIGFIDFIVEPTFSVLTDVAEKSVQPLADEDSKSKNQPSFQWRQP  320 (357)
T ss_dssp             HHHHHHHHHHHHHHHHHTCC------CCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHC--------------------
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999998899845999987668754320788999999999999999998770653688899999999899987641


Q ss_pred             ------------------------------------C
Q ss_conf             ------------------------------------9
Q 003496          278 ------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------~  278 (815)
                                                          +
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~en~~~~~~~~a~  357 (357)
T d1taza_         321 SLDVEVGDPNPDVVSFRSTWVKRIQENKQKWKERAAS  357 (357)
T ss_dssp             -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             2234557876234321314556545438999987439

>d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: O-acetyltransferase
domain: Homoserine O-acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=0  Score=26886.04  Aligned_cols=1  Identities=0%  Similarity=-0.693  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~f~~~~f~l~~G~~l~~~~laY~t~G~ln~~~~NaVlv~h~~tg~~~~~~~~~~~gWW~~liG~g~alDt~kyf   80 (357)
T d2b61a1           1 SVQNVVLFDTQPLTLMLGGKLSYINVAYQTYGTLNDEKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYF   80 (357)
T ss_dssp             CCEEEEESSSSCEECTTSCEECSEEEEEEEESCCCTTCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCE
T ss_pred             CCCEEEEEECCCEECCCCCCCCCCEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEE
T ss_conf             97428998479825689986589569999623337889988998488776653335678887588712799766777518


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 VI~~n~lG~~~gSs~p~s~~p~tg~~~g~~FP~iti~D~v~aq~~Ll~~LGI~~l~~viG~SmGGmqAl~wa~~~Pd~v~  160 (357)
T d2b61a1          81 FISSNVLGGCKGTTGPSSINPQTGKPYGSQFPNIVVQDIVKVQKALLEHLGISHLKAIIGGSFGGMQANQWAIDYPDFMD  160 (357)
T ss_dssp             EEEECCTTCSSSSSCTTSBCTTTSSBCGGGCCCCCHHHHHHHHHHHHHHTTCCCEEEEEEETHHHHHHHHHHHHSTTSEE
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf             99855667766667767889888997776422110689999999999871866488884040788899999874267774


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~i~i~~~a~~s~~~~~~~~~~~~aI~~Dp~~~~G~Y~~~~~p~~GL~~Ar~~a~~ty~s~~~~~~~f~r~~~~~~~~~~  240 (357)
T d2b61a1         161 NIVNLCSSIYFSAEAIGFNHVMRQAVINDPNFNGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWG  240 (357)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHHHHHHHTSTTCGGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBCTTCCTTS
T ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCC
T ss_conf             33244456433235788878899999828777788755688830689999999886404789999874522234433236


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~vesyL~~~g~kf~~rfDan~yl~l~~a~~~~D~~~~~~~l~~aL~~I~a~vLvi~~~sD~lFpp~~~~~~a~~l~~  320 (357)
T d2b61a1         241 DYFQVESYLSYQGKKFLERFDANSYLHLLRALDMYDPSLGYENVKEALSRIKARYTLVSVTTDQLFKPIDLYKSKQLLEQ  320 (357)
T ss_dssp             CCBHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSSSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf             53569999999889887607999999999986632654333338999862699889998477506598999999999986


Q ss_pred             ------------------------------------C
Q ss_conf             ------------------------------------9
Q 003496          278 ------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------~  278 (815)
                                                          .
T Consensus       321 ~~~~v~~~~I~S~~GHdafL~e~~~~~~~I~~fL~~~  357 (357)
T d2b61a1         321 SGVDLHFYEFPSDYGHDAFLVDYDQFEKRIRDGLAGN  357 (357)
T ss_dssp             TTCEEEEEEECCTTGGGHHHHCHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             6998699997999875554769899999999997359

>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Serine-carboxyl proteinase, SCP
domain: Serine-carboxyl proteinase, SCP
species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]

Probab=100.00  E-value=0  Score=26883.93  Aligned_cols=1  Identities=0%  Similarity=-0.427  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~p~~~~~~y~~~~G~tG~Gv~VaViDtGvd~~H~dl~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~   80 (357)
T d1t1ga_           1 AAPTAYTPLDVAQAYQFPEGLDGQGQCIAIIALGGGYDETSLAQYFASLGVSAPQVVSVSVDGATNQPTGDPNGPDGEVE   80 (357)
T ss_dssp             CCCEEECHHHHHHHTTCCTTCCCTTCEEEEEESSCCCCHHHHHHHHHHTTCCCCCEEEEESTTCCCCCCSCTTSTHHHHH
T ss_pred             CCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             99874789999998787889898897899997688778688987775058878998633799999887876556443005


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~d~~~~~GvAp~A~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~  160 (357)
T d1t1ga_          81 LDIEVAGALAPGAKIAVYFAPNTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLA  160 (357)
T ss_dssp             HHHHHHHHHSTTSEEEEEECCSSHHHHHHHHHHHHHCTTTCCSEEEECCCEEGGGSCHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf             77643125414676998741247884589999998741149808965666576766543489998766532157867999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~p~~~~~~~~~~~~  240 (357)
T d1t1ga_         161 AAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASAGRIERETVWNDGPDGGSTGGGVSRIFPLPSWQERANVPPSA  240 (357)
T ss_dssp             ECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEECSSCEEEEEECBCHHHHCBCCCEECSSSCCCGGGTTSCCCCCS
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             84168743211344544201135776236654023678775445201266666433447744121367523354234556


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~pd~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g  320 (357)
T d1t1ga_         241 NPGAGSGRGVPDVAGNADPATGYEVVIDGETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEG  320 (357)
T ss_dssp             STTCCCCCEECSEEEECCTTEEEEEEETTEEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSC
T ss_pred             CCCCCCCCEECCEECCCCCCCCEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCEECCCCC
T ss_conf             67777773313321135787742774699666168831687999999999976405886765999986260133124326


Q ss_pred             ------------------------------------C
Q ss_conf             ------------------------------------9
Q 003496          278 ------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------~  278 (815)
                                                          +
T Consensus       321 ~~~~~~~~~~~~a~~G~d~~tG~G~~n~~~~~~~l~p  357 (357)
T d1t1ga_         321 NNDIANRARIYQAGPGWDPCTGLGSPIGIRLLQALLP  357 (357)
T ss_dssp             BCCCSSSSCCSBCCSSSBTTTBTCEECHHHHHHHHCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             7788888776567668988846741549999874088

>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]}

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: 3-isopropylmalate dehydrogenase, IPMDH
species: Thiobacillus ferrooxidans [TaxId: 920]

Probab=100.00  E-value=0  Score=26883.90  Aligned_cols=1  Identities=0%  Similarity=-0.860  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 M~kI~vipGDGIGpEV~~~~~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~dail~Gai~~p~~~~   80 (357)
T d1a05a_           1 MKKIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAMAADAVILGAVGGPRWDA   80 (357)
T ss_dssp             CCEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCHHHHHHHHSSSSCHHHHHHHHHCSEEEEEECCCGGGTT
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCEEHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             97899977678669999999999999987708985999997552425441994899999999973065406656887567


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~lR~~ldlyanvRP~k~~pg~~~~~pl~~~~~~~vD~vivREnteg~Y~g~~~~~~~~~~~~~a~~~~  160 (357)
T d1a05a_          81 YPPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLRPELVRDVDILVVRELTGDIYFGQPRGLEVIDGKRRGFNTM  160 (357)
T ss_dssp             SCGGGSHHHHHHHHHHHHTCCEEEEEEECCTTSGGGCSBCHHHHTTCEEEEEEECSSSTTTCSSCEEEEETTEEEEEEEE
T ss_pred             CCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEECCCCCEEEEEEE
T ss_conf             78555666477889975695588777640367666789886667761399987455643357753221267764899999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~t~~~~~ri~~~Af~~a~~r~k~vt~v~K~ni~~~~~lf~~~~~eva~~yp~i~~~~~~vD~~~~~lv~~P~~fdViv~  240 (357)
T d1a05a_         161 VYDEDEIRRIAHVAFRAAQGRRKQLCSVDKANVLETTRLWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLLT  240 (357)
T ss_dssp             EEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGCSEEEE
T ss_pred             EEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCEEEC
T ss_conf             96289999999999988645786488885366411368999999999865898278751799999998745456567851


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~Nl~GDIlSDl~a~l~GglGl~ps~nig~~~a~fE~~HGsapdiaGk~~aNP~a~ils~ammL~~~lg~~~~A~~i~~Av  320 (357)
T d1a05a_         241 GNMFGDILSDEASQLTGSIGMLPSASLGEGRAMYEPIHGSAPDIAGQDKANPLATILSVAMMLRHSLNAEPWAQRVEAAV  320 (357)
T ss_dssp             CHHHHHHHHHHHHHTTSCGGGCEEEEECSSCEEEEESSCCCGGGTTTTCSCCHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             17888878899988735765410300068730102456878000589865949999999999972089879999999999


Q ss_pred             ------------------------------------C
Q ss_conf             ------------------------------------9
Q 003496          278 ------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------~  278 (815)
                                                          .
T Consensus       321 ~~~i~~g~~T~Dlgg~~t~~~~T~e~~daV~~~l~~~  357 (357)
T d1a05a_         321 QRVLDQGLRTADIAAPGTPVIGTKAMGAAVVNALNLK  357 (357)
T ss_dssp             HHHHHTTCCCGGGCCTTSCCCCHHHHHHHHHHTTTCC
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             9999769967566999998768999999999987469

>d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Adenosine/AMP deaminase
domain: Adenosine deaminase (ADA)
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=0  Score=26882.75  Aligned_cols=1  Identities=0%  Similarity=-0.959  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~lPK~eLH~HL~Gsi~~~~l~~la~~~~i~~~~~~~~~~~~~~~~~~~~~l~   80 (357)
T d2amxa1           1 EIKFLKKEDVQNIDLNGMSKKERYEIWRRIPKVELHCHLDLTFSAEFFLKWARKYNLQPNMSDDEILDHYLFTKEGKSLA   80 (357)
T ss_dssp             SCCCCCHHHHTTCCGGGCCHHHHHHHHHHSCEEECCBBGGGCCCHHHHHHHHHHTTCCTTSCHHHHHHHHCCCSTTCCHH
T ss_pred             CCCHHHHCCCCCCCHHCCCCHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHH
T ss_conf             93455522555687000470789999983908898667878999999999999729799999499999874567626599


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~f~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~v~y~Elr~~p~~~~~~~g~~~~~v~~~i~~g~~~a~~~~~~~~~~~  160 (357)
T d2amxa1          81 EFIRKAISVSDLYRDYDFIEDLAKWAVIEKYKEGVVLMEFRYSPTFVSSSYGLDVELIHKAFIKGIKNATELLNNKIHVA  160 (357)
T ss_dssp             HHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTTSSEEE
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             99999878778733899999999999999998415161133454324545676457799999999999987439845898


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 l~~~~~~~~~~~~~~~~~~~a~~~~~~vvGidl~g~e~~~~~~~~~f~~ar~~gl~it~HaGE~~~~~~~~~i~~ai~~l  240 (357)
T d2amxa1         161 LICISDTGHAAASIKHSGDFAIKHKHDFVGFDHGGREIDLKDHKDVYHSVRDHGLHLTVHAGEDATLPNLNTLYTAINIL  240 (357)
T ss_dssp             EEEECCCCCSHHHHHTTTHHHHHTTTTEEEEECCSSCCCCGGGHHHHHHHHHTTCEEEEEESCCTTCSSSHHHHHHHHTS
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf             63210266125557999999996388657312467766623469999999831876443455458999747899999704


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~RIgHGv~~~~d~~l~~~l~~~~I~leiCPtSN~~~~~~~~~~~HP~~~l~~~Gv~v~l~TDDp~~f~t~ls~ey~~~  320 (357)
T d2amxa1         241 NVERIGHGIRVSESDELIELVKKKDILLEVCPISNLLLNNVKSMDTHPIRKLYDAGVKVSVNSDDPGMFLSNINDNYEKL  320 (357)
T ss_dssp             CCSEEEECGGGGGCHHHHHHHHHHTCEEEECHHHHHHTTSSSCSTTCTHHHHHHTTCEEEECCBCHHHHTCCHHHHHHHH
T ss_pred             CCCCCCCCHHEECCHHHHHHHHHHCCEEEECCCCHHHHCCCCCCCCCHHHHHHHCCCEEEEECCCCHHHCCCHHHHHHHH
T ss_conf             97313652430058788998887185389887500242358970028999999889959995899412178879999999


Q ss_pred             ------------------------------------C
Q ss_conf             ------------------------------------9
Q 003496          278 ------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------~  278 (815)
                                                          -
T Consensus       321 ~~~~~ls~~el~~l~~nsi~~sF~~~~~K~~l~~~~~  357 (357)
T d2amxa1         321 YIHLNFTLEEFMIMNNWAFEKSFVSDDVKSELKALYF  357 (357)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHC
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf             9981989999999999999986899999999998659

>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Fungal peroxidase (ligninase)
species: Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=100.00  E-value=0  Score=26880.83  Aligned_cols=1  Identities=0%  Similarity=0.204  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 a~c~~g~~~~na~cc~~~~v~~dlq~~~~~~~c~~~A~~~lRL~FHDcfv~~~~~g~~~~gGcDgSill~~~~E~~~~~N   80 (357)
T d1yyda1           1 AVCPDGTRVSHAACCAFIPLAQDLQETIFQNECGEDAHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEPNFSAN   80 (357)
T ss_dssp             CBCTTSCBCSCGGGTTHHHHHHHHHHHTTTTSSSHHHHHHHHHHHHHHHCCCTTTCGGGCCSSSCHHHHSTTTGGGSGGG
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf             92899753677435467999999999985587507899999999824105103567678999781302178644678665


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~Gld~i~~~~~~~~~~~~~VScADiialAardAV~~~~GGP~~~v~~GR~Da~~a~~~~~LP~p~~~~~~l~~~Fa~~~G  160 (357)
T d1yyda1          81 NGIDDSVNNLIPFMQKHNTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGLIPEPQDSVTKILQRFEDAGG  160 (357)
T ss_dssp             TTTHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHTSTTCCCCCCEECCCSCCCCCCTTCSCCTTCCHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             88799999999999637998999999999999997306897204248888642234446789864569999999766512


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 lt~~dmVaLsGAHTIG~ah~~~~~~~~~~~~~tp~~fDn~~f~~ll~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~L~  240 (357)
T d1yyda1         161 FTPFEVVSLLASHSVARADKVDQTIDAAPFDSTPFTFDTQVFLEVLLKGVGFPGSANNTGEVASPLPLGSGSDTGEMRLQ  240 (357)
T ss_dssp             CCHHHHHHHGGGGGGCEESSSSTTCSCEESSSCTTSCSSHHHHHHTBCCCBCSSCSCCTTEECBSCCCCBTTBCCCCEEH
T ss_pred             CCHHHHHEEECCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf             88377611323331000245677754333466656301799999986368988888887601377744440102466248


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 SD~~L~~D~~T~~~V~~yA~n~~~F~~~Fa~AmvKms~lG~~~~~l~dcs~v~p~~~~~~~~~~~~p~~~~~~d~~~~~~  320 (357)
T d1yyda1         241 SDFALAHDPRTACIWQGFVNEQAFMAASFRAAMSKLAVLGHNRNSLIDCSDVVPVPKPATGQPAMFPASTGPQDLELSCP  320 (357)
T ss_dssp             HHHHHHHSTTTHHHHHHTTTCHHHHHHHHHHHHHHHTTTTSCGGGSEECGGGSCCCCCCCCCCCCBCTTCCGGGBCCCCT
T ss_pred             HHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf             99988419889999999965999999999999999997699953144577657899887788876789998676553055


Q ss_pred             ------------------------------------C
Q ss_conf             ------------------------------------9
Q 003496          278 ------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------~  278 (815)
                                                          .
T Consensus       321 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (357)
T d1yyda1         321 SERFPTLTTQPGASQSLIAHCPDGSMSCPGVQFNGPA  357 (357)
T ss_dssp             TSCCCCCCBCSCSSCCCCCSSTTSCSCCCCCCCCCCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             8999887789985334457899877689756678999

>d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase)
species: Pseudomonas stutzeri [TaxId: 316]

Probab=100.00  E-value=0  Score=26880.53  Aligned_cols=1  Identities=100%  Similarity=0.071  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~g~~~~~~~f~w~~~~~~~~~~~~~i~~kl~yl~~lGv~aIwl~P~~~~~~~~~~~~~~~~~hgY~~   80 (357)
T d1gcya2           1 DQAGKSPNAVRYHGGDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFW   80 (357)
T ss_dssp             CCCCCCTTCCCCGGGCCCEEECCCTTHHHHSTTTHHHHHHHHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTTC
T ss_pred             CCCCCCCCCEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCCCCCCCCCCCCCCH
T ss_conf             95556898605358987788624468788777747999999789999739999996947547866777777888788470


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~dy~vd~~~Gt~~df~~LV~~aH~~GI~VIlD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (357)
T d1gcya2          81 HDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYPNDCDDGDRFIGGD  160 (357)
T ss_dssp             SSSCSCSSSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCSSCSCCCCSSSSCBGGGSCCCSSSCBTTBSSCCSTTST
T ss_pred             HHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             30656866799999999999999638737898700354788875100465688765456677778888878555445665


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~dln~~np~v~~~~~~~~~~~~~~~giDGfR~Daa~~i~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~  240 (357)
T d1gcya2         161 ADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTASWQQ  240 (357)
T ss_dssp             TBBCTTSHHHHHHHHHHHHHHHHHSCEEEEEESCGGGSCHHHHHHHHHHHCTTSEEEECCCCCGGGSCTTSGGGGSCHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEHHCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCCCHHHH
T ss_conf             54477987999999999998777528987999515308999999998501788234543225763011011210110456


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fl~NHD~~r~~~~~~~~~~~~~~~~~~~la~a  320 (357)
T d1gcya2         241 IIKDWSDRAKCPVFDFALKERMQNGSIADWKHGLNGNPDPRWREVAVTFVDNHDTGYSPGQNGGQHHWALQDGLIRQAYA  320 (357)
T ss_dssp             HHHHHHHHHTSCEECHHHHHHHHHSCGGGGGGSGGGCSSHHHHTTEEECSCCTTTSBCSSGGGBCCSSCCCGGGHHHHHH
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             66767640344310035554300456999999985076656645257740477755424457864334287999999999


Q ss_pred             ------------------------------------C
Q ss_conf             ------------------------------------9
Q 003496          278 ------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------~  278 (815)
                                                          -
T Consensus       321 lllt~pGiP~IyyGde~d~g~~d~i~~li~iRk~~~i  357 (357)
T d1gcya2         321 YILTSPGTPVVYWDHMYDWGYGDFIRQLIQVRRAAGV  357 (357)
T ss_dssp             HHHHSSSEEEEEHHHHHTSSCHHHHHHHHHHHHHHTC
T ss_pred             HHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             9995799127970785467886999999999976879

>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin
species: Mucor pusillus [TaxId: 4840]

Probab=100.00  E-value=0  Score=26879.80  Aligned_cols=1  Identities=0%  Similarity=-1.622  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~Y~~~i~iGtP~Q~~~~ivDTGSs~~wv~~~~C~~~~~c~~~~~f~~~~SsT~~~~~~~~~~~y~~   80 (357)
T d1mppa_           1 GSVDTPGLYDFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNLNITYGT   80 (357)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCSSCCBCGGGCTTCEEEEEEEEEECSS
T ss_pred             CCCCCCCEECCCCCEEEEEEEECCCCEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf             95445525458798899999982899599999948975428714899998553589878874587622679445886588


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 g~~~G~~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~~i  160 (357)
T d1mppa_          81 GGANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLI  160 (357)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSCGGGSHHHHHHSCCCCCHHHHHHHTTSS
T ss_pred             CCEEEEEEEEECCCCCCEECCEEEEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf             71789998350212660488688999994045423215655433211235545776422244688788789999861565


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~fs~~l~~~~~~G~l~~Gg~d~~~~~~~~~~~pi~~~~~~~~~~~v~l~~i~v~g~~~~~~~~~~~~ilDSGts~~~  240 (357)
T d1mppa_         161 SSPVFSVYMNTNDGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVKIDGSDAVSFDGAQAFTIDTGTNFFI  240 (357)
T ss_dssp             SSSEEEEECCCSSSEEEEEESSCCGGGBSSCCEEEECEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTCCSEE
T ss_pred             CCCEEEEEECCCCCCCEEECCCCCHHHCCCCEEEEEECCCCCCCEEEEEEEEEEEECCEEEEECCCCCCEEEECCCCCCC
T ss_conf             55169998336899963987531766727730578721477874368998706998875765328973148613674236


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 lp~~~~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~c~~~~~~~~  320 (357)
T d1mppa_         241 APSSFAEKVVKAALPDATESQQGYTVPCSKYQDSKTTFSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVLPDG  320 (357)
T ss_dssp             EEHHHHHHHHHHHCTTCEEETTEEEEEHHHHTTCCCEEEEEEECTTCSSCEEEEEEEGGGGEEECSSSSCEEEESEEEES
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCCCCEEEEECHHHEEEEECCCCCEEEEEECCCC
T ss_conf             98999999999856775346885102420144568507999811565356679998659928996589988999984799


Q ss_pred             ------------------------------------C
Q ss_conf             ------------------------------------9
Q 003496          278 ------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------~  278 (815)
                                                          .
T Consensus       321 ~~~~ILG~~fl~~~yvvfD~~~~~iGfA~~~~~~~~~  357 (357)
T d1mppa_         321 GNQFIVGNLFLRFFVNVYDFGKNRIGFAPLASGYEND  357 (357)
T ss_dssp             SSCCEEEHHHHTTEEEEEETTTTEEEEEEBCTTTCCC
T ss_pred             CCCEEECHHHHCCEEEEEECCCCEEEEEECCCCCCCC
T ss_conf             9999945697397999998999999999998678998

>d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Alkaline cellulase K catalytic domain
species: Bacillus sp. [TaxId: 1409]

Probab=100.00  E-value=0  Score=26879.12  Aligned_cols=1  Identities=0%  Similarity=-1.026  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~p~~a~~~~~l~~~G~~~l~d~~G~~v~lrGv~~~~~~w~~~~~~~~~~~~l~~~~G~N~VRlp~~~~~~~~   80 (357)
T d1g01a_           1 PAGMQAVKSPSEAGALQLVELNGQLTLAGEDGTPVQLRGMSTHGLQWFGEIVNENAFVALSNDWGSNMIRLAMYIGENGY   80 (357)
T ss_dssp             CTTCTTCCCHHHHCSCEEEEETTEEEEECTTSCBCCCEEEEESCHHHHGGGCSHHHHHHHHTTSCCSEEEEEEESSSSST
T ss_pred             CCCCCCCCCCCCCCCCCEEEECCEEEEECCCCCEEEEEEEECCCCHHCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCC
T ss_conf             98544567965346788599738589999999999999885676200465568999999998649977988636557887


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~ld~~V~~a~~~GiyVIlD~H~~~~~~~~~~~~~~~~~~W~~iA~ry~~~~~~~~v~~el~NEP~~~~~~~~  160 (357)
T d1g01a_          81 ATNPEVKDLVYEGIELAFEHDMYVIVDWHVHAPGDPRADVYSGAYDFFEEIADHYKDHPKNHYIIWELANEPSPNNNGGP  160 (357)
T ss_dssp             TTCTTHHHHHHHHHHHHHHTTCEEEEEEECCSSSCTTSGGGTTHHHHHHHHHHHHTTCTTGGGEEEECCSCCCSCCTTSC
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf             44989999999999999978988998613268888880355666779999999975476237999987516353567654


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~IR~~~~~~iiv~~~~w~~~~~~~~~~~~~~~nvvys~H~Y~~~~~~~~~~~~~~~~~~  240 (357)
T d1g01a_         161 GLTNDEKGWEAVKEYAEPIVEMLREKGDNMILVGNPNWSQRPDLSADNPIDAENIMYSVHFYTGSHGASHIGYPEGTPSS  240 (357)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHTCHHHHHHSCCSSSSEEEEEEEETTTSCCCCCCCCTTCCGG
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHH
T ss_conf             56676136899999999999999853993499804876665200013557999779998872675677667777566447


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~g~Pv~vgEfG~~~~~~~~~~~~~~~~~~~~~~~~~~isw~~W~~~~~~~~~~~~~~~~~~~~~~~  320 (357)
T d1g01a_         241 ERSNVMANVRYALDNGVAVFATEWGTSQANGDGGPYFDEADVWLNFLNKHNISWANWSLTNKNEISGAFTPFELGRTDAT  320 (357)
T ss_dssp             GCCCHHHHHHHHHHTTCCEEEEEEESSBTTTBSCCCHHHHHHHHHHHHHTTCCEEEEEECCSSSTTCSBCCCCTTSCCCC
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             78999999999997699889983377678887876789999999999974993589957588776433067665566754


Q ss_pred             ------------------------------------C
Q ss_conf             ------------------------------------9
Q 003496          278 ------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------~  278 (815)
                                                          .
T Consensus       321 ~~~~~~~~~w~~~~l~~sG~~v~~~l~g~~~~~~~~~  357 (357)
T d1g01a_         321 DLDPGANQVWAPEELSLSGEYVRARIKGIEYTPIDRT  357 (357)
T ss_dssp             CSSCCTTCCCCGGGBCHHHHHHHHHHHTCCCCCCCCC
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf             5566667888765615467999998536778885789

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=26878.95  Aligned_cols=1  Identities=0%  Similarity=-0.294  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (357)
T d1db3a_           1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (357)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCC
T ss_conf             98899968886899999999997869899997897555556688887403303897599982067979988887525987


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~~~~P~~~Y~~sK  160 (357)
T d1db3a_          81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAK  160 (357)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCCCCCSHHHHHH
T ss_pred             EEEEEECCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             89985203553446559999999999999999999998489988689999845651889888958999999988699999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a~~~~~  240 (357)
T d1db3a_         161 LYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMML  240 (357)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCEEECHHHHHHHHHH
T ss_conf             99999999999996997899996454599877677714789999999838972699799980444443044878999998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  320 (357)
T d1db3a_         241 QQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLL  320 (357)
T ss_dssp             SSSSCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECGGGCCCCC-CCCC
T ss_pred             HCCCCCEEEECCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf             27899759978998164599999999983976321455331000233211222433566760376155357886446404


Q ss_pred             ------------------------------------C
Q ss_conf             ------------------------------------9
Q 003496          278 ------------------------------------V  278 (815)
Q Consensus       278 ------------------------------------~  278 (815)
                                                          +
T Consensus       321 ~d~skakk~LGw~P~~sl~egI~~~I~~~l~~~kk~~  357 (357)
T d1db3a_         321 GDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHS  357 (357)
T ss_dssp             BCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             4889999997998689899999999999999970129

>d16vpa_ d.180.1.1 (A:) Conserved core of transcriptional regulatory protein vp16 {Herpes simplex virus type 1 [TaxId: 10298]}

class: Alpha and beta proteins (a+b)
fold: Conserved core of transcriptional regulatory protein vp16
superfamily: Conserved core of transcriptional regulatory protein vp16
family: Conserved core of transcriptional regulatory protein vp16
domain: Conserved core of transcriptional regulatory protein vp16
species: Herpes simplex virus type 1 [TaxId: 10298]

Probab=100.00  E-value=0  Score=26815.99  Aligned_cols=1  Identities=0%  Similarity=0.636  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~r~psPp~~~sp~~Ly~rLl~eL~F~eGp~Lls~le~wNeDLFSclP~n~dLY~~~~~LSt~~~eVi~~~~~~~p~~~~i   80 (356)
T d16vpa_           1 SRMPSPPMPVPPAALFNRLLDDLGFSAGPALCTMLDTWNEDLFSALPTNADLYRECKFLSTLPSDVVEWGDAYVPERTQI   80 (356)
T ss_dssp             CCSCCCCCCCCHHHHHHHHHHHHTCTTHHHHHHHHHHCCCCCSTTSCCCGGGGTTCGGGCSCHHHHHHHHHHCCCCCSSC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
T ss_conf             99998988789799999999873998517899999984205550377874676531055389899999876179987750


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 dL~ahG~~~~P~~Pa~~eeLP~Yv~avq~fF~sELrAREe~Y~~Ll~~YC~AL~~yLr~sa~~~~r~~~~~~~~~~~~~~  160 (356)
T d16vpa_          81 DIRAHGDVAFPTLPATRDGLGLYYEALSRFFHAELRAREESYRTVLANFCSALYRYLRASVRQLHRQAHMRGRDRDLGEM  160 (356)
T ss_dssp             CTTCCCSSCCCCCCSSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf             01478998899999882353899999999999999998999999999999999999999887751310344541679999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~rq~i~~rYYRE~arLArllylHLYls~tRevswrl~A~Q~~~q~vF~~L~y~W~q~RQf~ClFhPvlfnhGvV~leg~p  240 (356)
T d16vpa_         161 LRATIADRYYRETARLARVLFLHLYLFLTREILWAAYAEQMMRPDLFDCLCCDLESWRQLAGLFQPFMFVNGALTVRGVP  240 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHTTEEEEESCSHHHHSSCCSCSBCCSEEEETTEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEEEECCCEEEECCEEEECCCC
T ss_conf             99999999999999999999999999999999999999986132634605740113432367535335417635667987


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 L~a~~Lr~~Ny~R~eLGLPlvR~~lvEE~~~pL~~~P~fs~~~pRssGyl~~~IraKmeaYS~~hp~~~~~~~~dH~YaR  320 (356)
T d16vpa_         241 IEARRLRELNHIREHLNLPLVRSAATEEPGAPLTTPPTLHGNQARASGYFMVLIRAKLDSYSSFTTSPSEAVMREHAYSR  320 (356)
T ss_dssp             CCHHHHHHHHHHHHHTTCCCCBCTTTSCTTSCSCCCCCCCTTSCCHHHHHHHHHHHHHTSTTC-----------------
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             88899988889998718840110100468987425886556785305689999999864420368888875444576447


Q ss_pred             -----------------------------------C
Q ss_conf             -----------------------------------9
Q 003496          278 -----------------------------------V  278 (815)
Q Consensus       278 -----------------------------------~  278 (815)
                                                         -
T Consensus       321 ~~~~~nYGst~eaml~~~~~~~p~~~~~~~~r~~~~  356 (356)
T d16vpa_         321 APTKNNYGSTIEGLLDLPDDDAPEEAGLAAPRLSFL  356 (356)
T ss_dssp             ----------------------------CCCEEEEC
T ss_pred             CCCCCCCCCCHHHCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf             888888773232101699999635532234321359

>d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: UROD/MetE-like
family: Uroporphyrinogen decarboxylase, UROD
domain: Uroporphyrinogen decarboxylase, UROD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=26809.85  Aligned_cols=1  Identities=0%  Similarity=-0.759  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~ne~~l~al~g~~~dr~PVw~MrqAGRylpey~~~r~~~~f~e~~~~pe~~ae~tl~p~~~~~~DaaiifsDil~~   80 (356)
T d1r3sa_           1 FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTLQPLRRFPLDAAIIFSGILVV   80 (356)
T ss_dssp             CCCCSCCHHHHHHHTCCCSSCCBCCTTSSSTTSHHHHHHHHTSCHHHHHTCHHHHHHHHHHHHHHSCCSCEECCCCTTHH
T ss_pred             CCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf             99764489999975998999998888445425889999871289999855999999998448986795425622442101


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~ealG~~v~f~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~l~~v~eai~~~~~~l~~~~pliGf~ggP~Tla~yli~~~~  160 (356)
T d1r3sa_          81 PQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGG  160 (356)
T ss_dssp             HHHTTCCCEEETTTEEECSSCCCSGGGGGGSCCGGGHHHHTHHHHHHHHHHHHHHTTSSCEEEEEECHHHHHHHHHHSSC
T ss_pred             HHHCCCEEEECCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHCCC
T ss_conf             34228635644889866776433202332101100002144899999999998735565663032031888999872134


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~pe~~~~ll~~lt~~~~~~~~~qi~aGad~i~ifDs~a~~l~~~~~~~~~~~~~~~i~~~i~~~~~~  240 (356)
T d1r3sa_         161 SSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLRE  240 (356)
T ss_dssp             CSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             21378898876303577889999999988999999860566540203520121357888888899999999999875101


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~i~~~~~~~~~l~~~~~~g~d~is~D~~~~l~~~~~~~~~~i~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~  320 (356)
T d1r3sa_         241 AGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEIGQLVKQMLDDFGP  320 (356)
T ss_dssp             TTCCCCCEEEEETTCGGGHHHHTTSSCSEEECCTTSCHHHHHHHHCSSSEEEEEECGGGGGSCHHHHHHHHHHHHHHHCS
T ss_pred             CCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf             24777302101044787888874248561254235799999998489832882888899859999999999999998189


Q ss_pred             -----------------------------------C
Q ss_conf             -----------------------------------9
Q 003496          278 -----------------------------------V  278 (815)
Q Consensus       278 -----------------------------------~  278 (815)
                                                         .
T Consensus       321 ~~~I~nlGhGI~p~tp~env~a~v~~vr~~~k~~~~  356 (356)
T d1r3sa_         321 HRYIANLGHGLYPDMDPEHVGAFVDAVHKHSRLLRQ  356 (356)
T ss_dssp             SSEEEEESSCCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEECCCCCCCCCCHHHHHHHHHHHHHHCHHHCC
T ss_conf             994896999759899999999999999996887459

>d1w8oa3 b.68.1.1 (A:47-402) Micromonospora sialidase, N-terminal domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Sialidases
family: Sialidases (neuraminidases)
domain: Micromonospora sialidase, N-terminal domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=100.00  E-value=0  Score=26807.15  Aligned_cols=1  Identities=0%  Similarity=-1.754  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~g~~g~~~~RiPslv~~~~G~lla~~~~r~~~~~d~~~~~i~~~rS~D~G~TWs~~~~v~~~~~~~~~   80 (356)
T d1w8oa3           1 GEPLYTEQDLAVNGREGFPNYRIPALTVTPDGDLLASYDGRPTGIGAPGPNSILQRRSTDGGRTWGEQQVVSAGQTTAPI   80 (356)
T ss_dssp             CCCCEEEEEEEETTSTTCSCEEEEEEEECTTSCEEEEEEECTTSCSTTSCCEEEEEEESSTTSSCCCCEEEECCBCSSSC
T ss_pred             CCCCCCEEECCCCCCCCCEEEEECEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCC
T ss_conf             99741200110057688383670789998999999999646489988887329999906899787788873238887764


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~v~~~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~  160 (356)
T d1w8oa3          81 KGFSDPSYLVDRETGTIFNFHVYSQRQGFAGSRPGTDPADPNVLHANVATSTDGGLTWSHRTITADITPDPGWRSRFAAS  160 (356)
T ss_dssp             BEEEEEEEEECTTTCCEEEEEEEESSCCTTTCCSCCCTTCTTSCEEEEEEESSTTSSCEEEECGGGSCCSTTCCEEEECS
T ss_pred             CCCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             34466248996899839999964035774443336787787479999983687652104652056655434432123466


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  240 (356)
T d1w8oa3         161 GEGIQLRYGPHAGRLIQQYTIINAAGAFQAVSVYSDDHGRTWRAGEAVGVGMDENKTVELSDGRVLLNSRDSARSGYRKV  240 (356)
T ss_dssp             EECEECCSSTTTTCEEEEEEEECTTSCEEEEEEEESSTTSSCEECCCBCSSCCSEEEEECTTSCEEEEECCTTCCSEEEE
T ss_pred             CCCEEEEECCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEE
T ss_conf             32046000244664045553012236632577752688752001446675543316899257620255642555540577


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~S~D~G~tw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~~S~D~G~tW~~~~~i~~~  320 (356)
T d1w8oa3         241 AVSTDGGHSYGPVTIDRDLPDPTNNASIIRAFPDAPAGSARAKVLLFSNAASQTSRSQGTIRMSCDDGQTWPVSKVFQPG  320 (356)
T ss_dssp             EEESSTTSCCCCCEEEEEEECSSCCCEEEESSTTCCTTCSGGGCEEEEEECCSSSSEEEEEEEESSTTSCCCEEEEEEEE
T ss_pred             EEECCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCEECCCCCEECCC
T ss_conf             88426887543022014335788787326743665346789809999799998897316999990799155886081799


Q ss_pred             -----------------------------------C
Q ss_conf             -----------------------------------9
Q 003496          278 -----------------------------------V  278 (815)
Q Consensus       278 -----------------------------------~  278 (815)
                                                         .
T Consensus       321 ~~~Ys~~~~~~dg~i~~~ye~g~~~~~~~~~l~~~~  356 (356)
T d1w8oa3         321 SMSYSTLTALPDGTYGLLYEPGTGIRYANFNLAWLG  356 (356)
T ss_dssp             ECCCEEEEECTTSCEEEEECCSSEEEEEEECHHHHT
T ss_pred             CCCCCEEEECCCCEEEEEEECCCCCEEEEEEHHHCC
T ss_conf             976863689589989999988997389996289979

>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Thermus thermophilus, AspRS-1 [TaxId: 274]

Probab=100.00  E-value=0  Score=26806.43  Aligned_cols=1  Identities=0%  Similarity=-0.759  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~p~~~~~~~~~~~~~~~~~Rl~~R~LdLR~~~~~~ilr~Rs~i~~~iR~ff~~~gfiEV~TP~L~~~~~eg~~~~~~   80 (356)
T d1l0wa3           1 TPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLV   80 (356)
T ss_dssp             CCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEE
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHH
T ss_conf             96962685445654456698887413365117887999999999999999999988898999898124677764432002


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~yL~~Spel~lk~ll~~g~~~Vf~i~~~FRaE~~~t~H~~EFtmLE~e~~~~~~~~~m~~~E~li~~v~~~  160 (356)
T d1l0wa3          81 PYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFRE  160 (356)
T ss_dssp             ECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             22113201117772856777775232368679982123522268754045668877666788878999999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~f~r~~~~~a~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~  240 (356)
T d1l0wa3         161 ALGVELPLPFPRLSYEEAMERYGSDKPDLRREGFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVR  240 (356)
T ss_dssp             HTCCCCCSSCCEEEHHHHHHHHSSSSCCCSCCSCCEEEEECCBSBCCCTTTSCCCBSSCTTBCBCSTTTTHHHHCGGGCB
T ss_pred             HHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHCCEEEEECCCCCCCHHHHCHHHCCCCCCE
T ss_conf             72877778977511776677870474767777566542036653113110012233437743687665100103888620


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 a~~FdL~~~G~ElanG~~r~~d~~~~~~r~~~~~~~~~~~~~~~~~yl~a~~~G~PP~~G~glGldRLlm~l~g~~~Ird  320 (356)
T d1l0wa3         241 ALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIRE  320 (356)
T ss_dssp             BSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEEEEEHHHHHHHHHTCSSGGG
T ss_pred             EEEEECCCCCEEEECCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHCCCCCHHH
T ss_conf             21230233878862107871748999999999767832357789999999667989962377709999999809995885


Q ss_pred             -----------------------------------C
Q ss_conf             -----------------------------------9
Q 003496          278 -----------------------------------V  278 (815)
Q Consensus       278 -----------------------------------~  278 (815)
                                                         +
T Consensus       321 vi~FPR~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~  356 (356)
T d1l0wa3         321 VIAFPKNKEGKDPLTGAPSPVPEEQLRELGLMVVRP  356 (356)
T ss_dssp             GSSSCCCTTSCBTTTTBSEECCHHHHHHHTEEECCC
T ss_pred             EECCCCCCCCCCCCCCCCCCCCHHHHHHCCEEECCC
T ss_conf             346899999998667899989999998668462185

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=100.00  E-value=0  Score=26806.42  Aligned_cols=1  Identities=0%  Similarity=-0.925  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~   80 (356)
T d1rkxa_           1 INNSFWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQP   80 (356)
T ss_dssp             CCHHHHTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCC
T ss_pred             CCHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCHH
T ss_conf             97344188989997888779999999999779989999789986177776640146876998405685760023430202


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~y~~~k  160 (356)
T d1rkxa_          81 EIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSK  160 (356)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             44444421565653246775353322334035666643045543222222212234565433322234568988432432


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~a  240 (356)
T d1rkxa_         161 GCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSG  240 (356)
T ss_dssp             HHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEECSCTTCEECCEETHHHHHH
T ss_pred             CCCHHHHHHHHHHCCCCHHCCCCCCEEEECCCCCEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCH
T ss_conf             33204566776521342010355733774267776488855143799999999718996688621342122123342200


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~skak~~LGw~P~~~  320 (356)
T d1rkxa_         241 YLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHPRWN  320 (356)
T ss_dssp             HHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHHHHCCCCCCC
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECHHHHHHHHCCCCCCC
T ss_conf             23455540345654444332222223322110245666787489862797179999875765686999999879986888


Q ss_pred             -----------------------------------C
Q ss_conf             -----------------------------------9
Q 003496          278 -----------------------------------V  278 (815)
Q Consensus       278 -----------------------------------~  278 (815)
                                                         .
T Consensus       321 l~egi~~ti~wyk~~~~~~~~~~~~~~~~~~~~~~~  356 (356)
T d1rkxa_         321 LNTTLEYIVGWHKNWLSGTDMHEYSITEINNYMNTK  356 (356)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf             999999999999998748998998999999971589

>d1lbqa_ c.92.1.1 (A:) Ferrochelatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Chelatase-like
superfamily: Chelatase
family: Ferrochelatase
domain: Ferrochelatase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=26806.07  Aligned_cols=1  Identities=0%  Similarity=-1.357  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 k~~tgVLL~nlGtP~s~~~V~~yL~~fl~D~~vi~~p~~~~~~l~~~I~~~R~~k~a~~Y~~IgggSPL~~~t~~qa~~l   80 (356)
T d1lbqa_           1 RSPTGIVLMNMGGPSKVEETYDFLYQLFADNDLIPISAKYQKTIAKYIAKFRTPKIEKQYREIGGGSPIRKWSEYQATEV   80 (356)
T ss_dssp             CCCEEEEEEECCCCSSGGGHHHHHHHHTTCCSSSCCCSSSHHHHHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             99659999878899986899999999758986446878899998656475687999999998189881089999989999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~L~~~~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~ilvlPlyPqyS~sTt~s~~~~v~~~l~~~~~~~~~~~~~  160 (356)
T d1lbqa_          81 CKILDKTCPETAPHKPYVAFRYAKPLTAETYKQMLKDGVKKAVAFSQYPHFSYSTTGSSINELWRQIKALDSERSISWSV  160 (356)
T ss_dssp             HHHHHHHCGGGCCEEEEEEESSSSSCHHHHHHHHHTTTCCEEEEEESCSSCCTTTHHHHHHHHHHHHHHHCTTCCSEEEE
T ss_pred             HHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf             98850233435772168873146320888999998579864378844234427888899999999988750102566426


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 I~~~~~~p~yI~a~a~~i~~~l~~~~~~~~~~~~LlfS~HgiP~~~~~~gdpY~~q~~~t~~~v~~~l~~~~~~~~~fQS  240 (356)
T d1lbqa_         161 IDRWPTNEGLIKAFSENITKKLQEFPQPVRDKVVLLFSAHSLPMDVVNTGDAYPAEVAATVYNIMQKLKFKNPYRLVWQS  240 (356)
T ss_dssp             ECCCTTCHHHHHHHHHHHHHHHHTSCSTTGGGCEEEEEEECCBHHHHTTTCSHHHHHHHHHHHHHHHTTTCSCEEEEEEC
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf             44644312279999999999999767544567379995477653333327874689999999876430566645777640


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 r~g~~~WL~P~t~~~le~l~~g~k~v~v~p~gFvsD~lETL~Eidie~~~~~~gg~~f~~vp~lN~~p~fi~~La~lV~~  320 (356)
T d1lbqa_         241 QVGPKPWLGAQTAEIAEFLGPKVDGLMFIPIAFTSDHIETLHEIDLGVIGESEYKDKFKRCESLNGNQTFIEGMADLVKS  320 (356)
T ss_dssp             CCSSSCBCSCBHHHHHHHHGGGCSCEEEECTTCSSCCHHHHTCCCCCCCTTCTTGGGEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf             45677777875599999840489748998885242234449887777999971887499868998998999999999999


Q ss_pred             -----------------------------------C
Q ss_conf             -----------------------------------9
Q 003496          278 -----------------------------------V  278 (815)
Q Consensus       278 -----------------------------------~  278 (815)
                                                         .
T Consensus       321 ~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (356)
T d1lbqa_         321 HLQSNQLYSNQLPLDFALGKSNDPVKDLSLVFGNHE  356 (356)
T ss_dssp             HHHHCCSSCTTHHHHHHHCCCSSCCSCHHHHSBCCC
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf             865685567446644334768871118698616899

>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]}

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: 3-isopropylmalate dehydrogenase, IPMDH
species: Bacillus coagulans [TaxId: 1398]

Probab=100.00  E-value=0  Score=26806.06  Aligned_cols=1  Identities=0%  Similarity=-1.026  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 m~~rI~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~et~e~i~~~dail~Gav~~p~~~   80 (356)
T d1v53a1           1 MKMKLAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLDICRRSDAILLGAVGGPKWD   80 (356)
T ss_dssp             CCEEEEEEEESTTHHHHHHHHHHHHHHHHTTSSCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGS
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf             97079998878765999999999999998624997499999556899997499288999999986082799256798867


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~lR~~ldlyanvRPv~~~~gi~~~~p~~~~~~~~vD~vivREnteg~Y~g~~~~~~~~~~~~~~~~~  160 (356)
T d1v53a1          81 HNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLKRERVENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTL  160 (356)
T ss_dssp             SSCGGGCHHHHHHHHHHHHTCCEEEEEEECCGGGTTTSSBCHHHHTTCEEEEEEECSSBTTTCSCEEEESSTTCEEEEEE
T ss_pred             CCCCCCCCCHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCEECCCCCCCCCCCC
T ss_conf             78988583021689998708725566665430344579977667788239996046766065305330224652002200


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~t~~~~~ri~r~af~~A~~r~kkVt~v~K~nv~~~~~~~~~~~~eva~eyp~I~~~~~~vD~~~~~lv~~P~~fdViv~  240 (356)
T d1v53a1         161 AYTREEIERIIEKAFQLAQIRRKKLASVDKANVLESSRMWREIAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVIVT  240 (356)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTCHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEE
T ss_pred             EEEEEEEEEHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHCCCCCCEEEC
T ss_conf             02321430034577767874598465775254102450586999999836898699998836678898722344664532


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~Nl~GDIlSDl~a~l~GglGl~~s~ni~~d~~a~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~~lg~~~~A~~i~~A  320 (356)
T d1v53a1         241 ENMFGDILSDEASVITGSLGMLPSASLRSDRFGMYEPVHGSAPDIAGQGKANPLGTVLSAALMLRYSFGLEKEAAAIEKA  320 (356)
T ss_dssp             CHHHHHHHHHHHTTTTSCTTSCEEEEECSSSCEEEEESSCCCGGGTTSSCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             67888888899988736763111200268731463378887234448996592999999999998637987999999999


Q ss_pred             -----------------------------------C
Q ss_conf             -----------------------------------9
Q 003496          278 -----------------------------------V  278 (815)
Q Consensus       278 -----------------------------------~  278 (815)
                                                         .
T Consensus       321 v~~~l~~g~~T~Dl~~~~gg~~~T~e~~dav~~~L~  356 (356)
T d1v53a1         321 VDDVLQDGYCTGDLQVANGKVVSTIELTDRLIEKLN  356 (356)
T ss_dssp             HHHHHHTTEESSSSCCTTCEECCHHHHHHHHHHHCC
T ss_pred             HHHHHHCCCCCCCCCCCCCCEECHHHHHHHHHHHCC
T ss_conf             999998599473556679970379999999998429

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=0  Score=26805.73  Aligned_cols=1  Identities=0%  Similarity=-0.327  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~e~~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s~~~g~~~~~~~~~~~~   80 (356)
T d1jnra2           1 VYYPKKYELYKADEVPTEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTG   80 (356)
T ss_dssp             CCCCSSCCCCCGGGSCEEEEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTTTTCEEEESCCCCSSS
T ss_pred             CCCCCCHHHHCCCCCCCEEEECCEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf             97775033213556776687649899898889999999999978867697999967889997359877899974233323


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~Ds~e~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (356)
T d1jnra2          81 RSERQNTLEDYVRYVTLDMMGLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVREGQWQIMIHGESYKPIIAEAA  160 (356)
T ss_dssp             SBSCCCCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCBCBCTTSCBCBSSSSCEEEEETTHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHH
T ss_conf             56766899999999998606876188999988741123556876097742013323322333100246640788999998


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~i~~~~~~~~l~~~~~~~~~v~~~~~~~~~~G~~~~i~Ak~VILATGG~~~~~~~~~~~~~~~~~~~~~~~tG  240 (356)
T d1jnra2         161 KMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLLFRPRSTGEAAGRTWYAIFDTG  240 (356)
T ss_dssp             HHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSSSCCSCCSGGGGCCSSCTTCBS
T ss_pred             HHHHCCEEEEEEEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             86304517899999887653024665214568877404837984078799917875331357777644564447987577


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 dG~~ma~~aGa~l~~~~~~q~~p~~~~~~~~~~~~~~~~~~~~~~~gl~~~g~~~~~~g~rf~~~~~~~g~~a~~~~~~~  320 (356)
T d1jnra2         241 SGYYMGLKAGAMLTQAGFWVCGPEDLMPEEYAKLFPLKYNRMTTVKGLFAIGDCAGANPHKFSSGSFTEGRIAAKAAVRF  320 (356)
T ss_dssp             HHHHHHHHHTCCEESCEECCCCCTTTCCHHHHTTCSSCCTTBCSSBTEEECGGGBCSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             09999998534524787247616645782432456567664004352121420017766557355655412328999999


Q ss_pred             -----------------------------------C
Q ss_conf             -----------------------------------9
Q 003496          278 -----------------------------------V  278 (815)
Q Consensus       278 -----------------------------------~  278 (815)
                                                         +
T Consensus       321 i~~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~~  356 (356)
T d1jnra2         321 ILEQKPNPEIDDAVVEELKKKAYAPMERFMQYKDLS  356 (356)
T ss_dssp             HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred             HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             972899887788999999988776899998507999

>d2ebsa2 b.69.13.1 (A:431-786) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=100.00  E-value=0  Score=26804.97  Aligned_cols=1  Identities=0%  Similarity=-0.695  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~w~~~~~g~ee~~~~~l~spp~g~~l~s~~gd~~gf~~~dl~~p~~~~~~p~~~~~~~id~a~~~p~~ivr~G~~~~   80 (356)
T d2ebsa2           1 WAPSWYLQIDGIEENAILSLRSPKSGAALLSGIGNISGMKHDDLTKPQKMFGAPQFSNLDSIDAAGNFPNVVVRAGSSGH   80 (356)
T ss_dssp             CCCCEEECCTTCBCCBEEEEECCSSSSSEEEEESSSBCBEESCTTSCCCBCCSSCCSEEEEEEECSSCTTCEEEEEECCC
T ss_pred             CCCCCEECCCCEEHHHEEEEECCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHEEEHHHCCCEEEEEECCCC
T ss_conf             99854576578010000015758999810688864785597458887535268885640120104118956999967788


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~StDgG~TW~~~~~~~~g~~~~~~~~g~ia~s~dg~~ivw~~~~~~~~~gv~~StD~G~TW~~~~~~~~~  160 (356)
T d2ebsa2          81 EYDSACARGAYATDGGDAWTIFPTCPPGMNASHYQGSTIAVDASGSQIVWSTKLDEQASGPWYSHDYGKTWSVPAGDLKA  160 (356)
T ss_dssp             CBTTBCTTEEEESSSSSSEEECSCCCTTCSTTCCSCCEEEECTTSCCEEEECCCTTCCSCCEEESSTTSCCBCCEESCCS
T ss_pred             CCCCCCCCEEEEECCHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCEEEECCCCCCEEECCCCCCC
T ss_conf             78888872799840522442787688886566446646999458993078731467886449970797113876777888


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~i~~d~~~~~~~Ya~~~g~ly~StDgG~TW~~~~~~~~~~~~~~~~v~p~~~g~v~v~~~~~Gl~~StDgG~TWt~i  240 (356)
T d2ebsa2         161 QTANVLSDKVQDGTFYATDGGKFFVSTDGGKSYAAKGAGLVTGTSLMPAVNPWVAGDVWVPVPEGGLFHSTDFGASFTRV  240 (356)
T ss_dssp             CCSCEEECSSSTTCEEEEETTEEEEESSTTSEEEECCBTCCCCCCCCCEECTTSTTCEEEEETTTEEEEESSTTSBCEEE
T ss_pred             CCCEEEEECCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCEEEECCCCCEEEEC
T ss_conf             73189996767965785046319994787654532256775454036888741699502112445259922776348981


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~g~~~~~~~~GvyrS~D~G~TW~~Ind~~~~~g~~~~i~~Dp~~~grvYv  320 (356)
T d2ebsa2         241 GTANATLVSVGAPKSKSDGKKASAPSAVFIWGTDKPGSDIGLYRSDDNGSTWTRVNDQEHNYSGPTMIEADPKVYGRVYL  320 (356)
T ss_dssp             SSCEEEEEEEEEEC---------CCEEEEEEEESSTTSCSEEEEESSTTSSCEECCCTTSCTTCEEEEEECTTSTTCEEE
T ss_pred             CCCCCCCCEECCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCEECCCCCCCCCCEEEEECCCCCCCEEEE
T ss_conf             47888764013333566454678875599999864798076999969997934995997777752289718976998999


Q ss_pred             -----------------------------------C
Q ss_conf             -----------------------------------9
Q 003496          278 -----------------------------------V  278 (815)
Q Consensus       278 -----------------------------------~  278 (815)
                                                         .
T Consensus       321 gT~GrGi~y~~~~~~~s~~~~~~~~~~~~~~~~~~~  356 (356)
T d2ebsa2         321 GTNGRGIVYADLTNKKSNEEKSTAKCANGQKGTHCY  356 (356)
T ss_dssp             EEBSSCEEEEECCC----CCCCEEEETTCCSSSCCC
T ss_pred             EECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             968876799967788577887420127888887679

>d1jaka1 c.1.8.6 (A:151-506) beta-N-acetylhexosaminidase {Streptomyces plicatus [TaxId: 1922]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-N-acetylhexosaminidase catalytic domain
domain: beta-N-acetylhexosaminidase
species: Streptomyces plicatus [TaxId: 1922]

Probab=100.00  E-value=0  Score=26804.64  Aligned_cols=1  Identities=0%  Similarity=-0.161  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 f~~RG~mlD~aR~f~~~~~i~~~id~ma~~K~N~lh~Hl~D~~~~r~e~~~~p~l~~~ga~~~~~~~~~~~yT~~di~~i   80 (356)
T d1jaka1           1 YAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGGGPGGYYTKAEYKEI   80 (356)
T ss_dssp             CSEEEEEEECSSSCCCHHHHHHHHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHH
T ss_pred             CCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCEEECCCCHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             98438678767998599999999999998299079999864887610016873465436756667788885289999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 v~ya~~rgI~viPEid~PgH~~~~~~~~pel~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~v~~E~~~lfp~~~~Hi  160 (356)
T d1jaka1          81 VRYAASRHLEVVPEIDMPGHTNAALASYAELNCDGVAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHI  160 (356)
T ss_dssp             HHHHHHTTCEEEEECCCSSSCHHHHHHCGGGSTTSCCCCCCCSCCCSCCCCCTTCHHHHHHHHHHHHHHHHTCCSSEEEC
T ss_pred             HHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             99999729868644777304679987584002568998644466778865566856789999999999987515507986


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 GgDE~~~~~~~~~~~f~~~~~~~v~~~gk~~~~W~e~~~~~~~~~~vV~~W~~~~~~~~~~~~~~~~~~~G~~vI~s~~~  240 (356)
T d1jaka1         161 GGDEAHSTPKADFVAFMKRVQPIVAKYGKTVVGWHQLAGAEPVEGALVQYWGLDRTGDAEKAEVAEAARNGTGLILSPAD  240 (356)
T ss_dssp             CCCCCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEGGGGGSCCCTTCEEEECCCTTSCHHHHHHHHHHHHTTCEEEECCTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEECCCC
T ss_conf             00244444078999999999999998599458740013678988867887730356763267999999809969977870


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~Yld~~~~~~~~~~~~w~~~~~~~~~y~~~P~~~~~~~~~~~ilG~e~~lWtE~i~~~~~~~~~~~PR~~AlAEr~Ws~  320 (356)
T d1jaka1         241 RTYLDMKYTKDTPLGLSWAGYVEVQRSYDWDPAGYLPGAPADAVRGVEAPLWTETLSDPDQLDYMAFPRLPGVAELGWSP  320 (356)
T ss_dssp             TTCTTBCSSTTCSSSBCTTCCCCHHHHHSCCGGGSSTTCCGGGEEEEEEEECCTTCCSHHHHHHHHTTHHHHHHHHHHSC
T ss_pred             HHEECCCCCCCCCCCCCCCCEEEHHHEEECCCCCCCCCCCHHCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             12020366789987753345122311450366567874521056478855054777998999988775599999998688


Q ss_pred             -----------------------------------C
Q ss_conf             -----------------------------------9
Q 003496          278 -----------------------------------V  278 (815)
Q Consensus       278 -----------------------------------~  278 (815)
                                                         .
T Consensus       321 ~~~~d~~~f~~RL~~~~~~l~~~Gv~y~r~p~~pw~  356 (356)
T d1jaka1         321 ASTHDWDTYKVRLAAQAPYWEAAGIDFYRSPQVPWT  356 (356)
T ss_dssp             GGGCCHHHHHHHHHTTHHHHHHHTCCCCCCTTSCCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             867999999999999999999779980679999999

>d1goia2 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic domain {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Type II chitinase
domain: Chitinase B, catalytic domain
species: Serratia marcescens [TaxId: 615]

Probab=100.00  E-value=0  Score=26803.21  Aligned_cols=1  Identities=0%  Similarity=-1.257  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~yy~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lTHi~yaFa~i~~~g~~~~~~~~~~~~~~~~~~~~~~lK   80 (356)
T d1goia2           1 TRKAVIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALK   80 (356)
T ss_dssp             CCCEEEEEEECCHHHHHTCCSSCTTTCSSCGGGSCHHHHHHCSEEEEEEEEECTTSSEECCTTCCHHHHHHHHHHHHHGG
T ss_pred             CCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHCCEEEEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             98579999867745767624467766776720088404752994999879977996488258765267788999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~p~lKvllSiGGW~~s~~~~~~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGIDIDWE~P~~~~~~~~~~l~~el~  160 (356)
T d1goia2          81 AHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNIDWEYPQAAEVDGFIAALQEIR  160 (356)
T ss_dssp             GGCTTCEEEEEEECHHHHSTTSTTHHHHHHHTSSHHHHHHHHHHHHHHHHHHTCSEEEEECSCCCHHHHHHHHHHHHHHH
T ss_pred             HHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf             87889869999837767788765543067885899999999999999999829982446420135444455336899999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~d~~~l~~~vD~invMtYD~~g~w~~~tg~~spLy~~~~~p~~~~~  240 (356)
T d1goia2         161 TLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNA  240 (356)
T ss_dssp             HHHHHHHHHTTCTTSCCEEEEEEESSHHHHTTTGGGHHHHHTTCSEEEEECCCSSCTTSSSCCCTTCSSBCTTSCCBCCG
T ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCC
T ss_conf             98778888746545543058840577777752104799863215746787302367888887887745477889733212


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~vsydd~~Si~~K~~y~~~~~LgGv~iW~l~~Dd~  320 (356)
T d1goia2         241 LREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFDDAESFKYKAKYIKQQQLGGVMFWHLGQDNR  320 (356)
T ss_dssp             GGGSSCCCCHHHHHHHCCSSBCCCHHHHHHHHHTSTTCCGGGEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECGGGSCT
T ss_pred             CCCCCCCCCHHHCCCCCCCCCCEECCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             55444566765456566887522225899977986599843405882149999999999999957998999981488899


Q ss_pred             -----------------------------------C
Q ss_conf             -----------------------------------9
Q 003496          278 -----------------------------------V  278 (815)
Q Consensus       278 -----------------------------------~  278 (815)
                                                         .
T Consensus       321 ~gsLl~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (356)
T d1goia2         321 NGDLLAALDRYFNAADYDDSQLDMGTGLRYTGVGPG  356 (356)
T ss_dssp             TCHHHHHHHHHHHCTTCCCTTCCCCSCBCCCCCCTT
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCC
T ss_conf             967999987762687899653506788154178999

>d1vbga1 c.1.12.2 (A:521-876) Pyruvate phosphate dikinase, C-terminal domain {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate phosphate dikinase, C-terminal domain
domain: Pyruvate phosphate dikinase, C-terminal domain
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=0  Score=26803.45  Aligned_cols=1  Identities=100%  Similarity=1.167  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~~~~~ad~~r~i~i~aNi~~~~e~~~a~~~gadGVGL~RtEflfl~~~~~~~~~~~~i~~p~~ee~~~~~~~~~~   80 (356)
T d1vbga1           1 SGDLGTFMAWVDDVRKLKVLANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRQMIMAPTLELRQQALDRLLP   80 (356)
T ss_dssp             SCHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCCSEEEEEHHHHHTTCHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCEEEHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             93488999987537764899858999999999847997171777888741886304678987629999999999998788


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~q~~~y~~i~~~~~g~pvtiRtlD~~~dk~lp~~~~~~~~~~l~~~~g~dk~~~~~~~~~~~E~NP~LG~RGiR~~l~~p  160 (356)
T d1vbga1          81 YQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGNIEDIVSELCAETGANQEDALARIEKLSEVNPMLGFRGCRLGISYP  160 (356)
T ss_dssp             HHHHHHHHHHHHTTTSEEEEECCCSCGGGGSCCSCHHHHHHHHHHHHCCCHHHHHHHHHHHCCSCGGGSSCTHHHHHHSH
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHCEEEEECHHHH
T ss_conf             78999999999748996699984278776676630567999999871998024554321334688432020455010211


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~f~~ql~Ail~A~~~~~~~~~~~~~~IMiPmV~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~iGiMiEvPsaal~~d~  240 (356)
T d1vbga1         161 ELTEMQARAIFEAAIAMTNQGVQVFPEIMVPLVGTPQELGHQVTLIRQVAEKVFANVGKTIGYKVGTMIEIPRAALVADE  240 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCCCEEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEECSHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHH
T ss_conf             21357899999898744545756536550058763999999998887757888873066667435552357289997999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~DF~SIGTNDLtQytla~DRdn~~~~~~~y~~~~~~~~dp~~pav~~~i~~lI~~a~~~~k~~~~~i~vsiCGE~a  320 (356)
T d1vbga1         241 IAEQAEFFSFGTNDLTQMTFGYSRDDVGKFIPVYLAQGILQHDPFEVLDQRGVGELVKFATERGRKARPNLKVGICGEHG  320 (356)
T ss_dssp             HTTTCSEEEECHHHHHHHHHTCCTTTGGGTHHHHHHTTSCSSCTTTSCCTTTHHHHHHHHHHHHHHHSTTCEEEEESGGG
T ss_pred             HHHEEEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf             96567899953038999999861310000026888630122587547789999999999999988507999699706434


Q ss_pred             -----------------------------------C
Q ss_conf             -----------------------------------9
Q 003496          278 -----------------------------------V  278 (815)
Q Consensus       278 -----------------------------------~  278 (815)
                                                         -
T Consensus       321 sdp~~~~~L~~lGi~~iS~sp~~ip~~k~a~aq~~~  356 (356)
T d1vbga1         321 GEPSSVAFFAKAGLDYVSCSPFRVPIARLAAAQVLV  356 (356)
T ss_dssp             GSHHHHHHHHHTTCSEEEECGGGHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCC
T ss_conf             799999999987999899890778999999977509

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=100.00  E-value=0  Score=26732.72  Aligned_cols=1  Identities=0%  Similarity=-0.693  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~plw~~~~~~~p~~p~~~~~p~~w~~~~~~~~l~~~~~~~~~~~~~rr~~~l~np~~~~~~~   80 (355)
T d3bu7a1           1 RDTPELEAYYDDLAKIETGALWTVANDIEPWEPTPKSAPVHWKWSDLRREVLRAIDLVRPEDAGRRVVYLRNPQRKDVSA   80 (355)
T ss_dssp             CCCHHHHHHHHHHHHTTCCCGGGSCGGGSCSSCCCSSCCCEECHHHHHHHHHHHHHHSCSSCSSCCCEECCCGGGGGGTC
T ss_pred             CCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCHHHCCEEEEEEECCCCCCCCC
T ss_conf             98578999999998768945110046778999998862216009999999998741168311770599960798778777


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~t~~l~~~~q~l~PGe~~~~HrH~~~~~~~vi~G~g~~t~v~ge~~~~~~GD~~~~P~~~~H~h~n~~~~~~~~~l~~~D  160 (355)
T d3bu7a1          81 ACGWLFSGIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDGHKVELGANDFVLTPNGTWHEHGILESGTECIWQDGLD  160 (355)
T ss_dssp             SBTTBEEEEEEECTTCBCCCEEESSCEEEEEEECSCEEEEETTEEEEECTTCEEEECTTCCEEEEECTTCCCEEEEEEEC
T ss_pred             CCCHHHHHEEEECCCCCCCCCCCCCCEEEEEEECCCEEEEECCEEEEEECCCEEEECCCCEEEEECCCCCCCEEEEEECC
T ss_conf             67204532076689983730115442048999898079989998877667999995899528622478997489998125


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~Pl~~~l~~~f~e~~p~~~~~~~~~~~~s~~~~~~~~~~p~~~~~~~~~sp~~~ypw~~~~~al~~~~~~~~~~~~~g~~  240 (355)
T d3bu7a1         161 IPLTNCLEANFYEVHPNDYQTTDIPLNDSPLTYGGPALLPQLDKWDKPYSPLLKYSWEPTYEALLNYAKASDGSPYDGLI  240 (355)
T ss_dssp             HHHHHHTTCCCEEECTTSSCCCCCCTTHHHHHHCSTTEEESSCCCCCSSCSCCEECHHHHHHHHHHHHTTCCCBTTTBEE
T ss_pred             HHHHHHCCCEECCCCCHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEE
T ss_conf             67876326300125840014555787602455344565443456776668533366442167789898547888778559


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 l~y~nP~tg~~~~~ti~~~~~~l~pG~~~~~hrH~~~~v~~v~~G~g~~~i~g~~~~~~~GDv~~vP~~~~h~~~N~s~~  320 (355)
T d3bu7a1         241 LRYTNPQTGGHPMLTMGASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIVGGKRFDWSEHDIFCVPAWTWHEHCNTQER  320 (355)
T ss_dssp             EEECCTTTSSCSSSSCEEEEEEECTTCBCCCEEESSCEEEEEEECCEEEEETTEEEEECTTCEEEECTTCCEEEEECCSS
T ss_pred             EEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCEEEEECCEEEEEECCCEEEECCCCCEEEECCCCC
T ss_conf             99646655577752016789997899705883735707999997849999999998862899899499984785558998


Q ss_pred             ----------------------------------C
Q ss_conf             ----------------------------------9
Q 003496          278 ----------------------------------V  278 (815)
Q Consensus       278 ----------------------------------~  278 (815)
                                                        .
T Consensus       321 e~~~Lf~~~D~P~~~~Lg~~~e~~~~~~~~~q~~~  355 (355)
T d3bu7a1         321 DDACLFSFNDFPVMEKLGFWAEQALEDNGGHQIVA  355 (355)
T ss_dssp             CCEEEEEEESHHHHHHTTCCCEEECCSTTTCCCCC
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             86899995475999876167775411047976569

>d1fuia2 c.85.1.1 (A:1-355) L-fucose isomerase, N-terminal and second domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FucI/AraA N-terminal and middle domains
superfamily: FucI/AraA N-terminal and middle domains
family: L-fucose isomerase, N-terminal and second domains
domain: L-fucose isomerase, N-terminal and second domains
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=26732.90  Aligned_cols=1  Identities=0%  Similarity=-0.295  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~~~~~pkiGirp~~Dgr~~~~re~le~~t~~~ak~~a~~l~~~l~~~~g~~ve~V~~d~~i~~~~eA~~~aekf~~~~v   80 (355)
T d1fuia2           1 MKKISLPKIGIRPVIDGRRMGVRESLEEQTMNMAKATAALLTEKLRHACGAAVECVISDTCIAGMAEAAACEEKFSSQNV   80 (355)
T ss_dssp             CCSCSCCEEEEEEBCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHCBCTTSCBCCEEECSSCBCSHHHHHHHHHHHHTTTE
T ss_pred             CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             98678980677853356504432038999999999999999987412689976999467516886999999999866598


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 d~~i~v~p~w~~~~~~~~~~~~~p~~vw~fn~~erpG~vgl~a~~aa~~q~Gip~~~iyg~~vqd~~d~~~p~dv~ekll  160 (355)
T d1fuia2          81 GLTITVTPCWCYGSETIDMDPTRPKAIWGFNGTERPGAVYLAAALAAHSQKGIPAFSIYGHDVQDADDTSIPADVEEKLL  160 (355)
T ss_dssp             EEEEEEESSCCCHHHHSCCCSSSCEEEEECBCSSSBHHHHHHHHHHHHHHTTCCCEEEECSSCCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEEECCCCCHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf             77999825546615545314799866882689999868999999999986598734760776668754226699999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~faRAa~av~~Lrg~~ig~iG~~~mGm~~~~~d~~~l~~~fGi~ve~iDm~El~rr~e~~i~D~eEv~~Al~w~k~~~~~  240 (355)
T d1fuia2         161 RFARAGLAVASMKGKSYLSLGGVSMGIAGSIVDHNFFESWLGMKVQAVDMTELRRRIDQKIYDEAELEMALAWADKNFRY  240 (355)
T ss_dssp             HHHHHHHHHHHHTTCEEEEESSCSTTCGGGSCCHHHHHHHHCCEEEEECTHHHHHHHHTTCSCHHHHHHHHHHHHHHCEE
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             99999999998658927887785677441257999999983995278759999999974689999999999999973302


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 g~d~n~~~~~~~~~~~~e~~e~~vkm~~~~rdlm~~n~~l~~~~~~ee~~g~~aia~gfqgqr~wtd~~p~~d~~ea~LN  320 (355)
T d1fuia2         241 GEDENNKQYQRNAEQSRAVLRESLLMAMCIRDMMQGNSKLADIGRVEESLGYNAIAAGFQGQRHWTDQYPNGDTAEAILN  320 (355)
T ss_dssp             CCCCSCGGGCCCHHHHHHHHHHHHHHHHHHHHHHHCCTHHHHTTCHHHHTCCCEEEEEECCTTTTTTTSCCSHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHCCCCCEEEEECCCCHHHCCCCCCHHHHHHHC
T ss_conf             41357512477776759899999999999999985081034414157656888425531245202103655107899857


Q ss_pred             ----------------------------------C
Q ss_conf             ----------------------------------9
Q 003496          278 ----------------------------------V  278 (815)
Q Consensus       278 ----------------------------------~  278 (815)
                                                        .
T Consensus       321 s~~dwnG~rep~~~AtE~D~~~altMl~~~lLTgt  355 (355)
T d1fuia2         321 SSFDWNGVREPFVVATENDSLNGVAMLMGHQLTGT  355 (355)
T ss_dssp             SSEETTEECCCCCEEETTCHHHHHHHHHHHHHHCS
T ss_pred             CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             84444787686336633340108999999875089

>d1luca_ c.1.16.1 (A:) Bacterial luciferase alpha chain, LuxA {Vibrio harveyi [TaxId: 669]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Bacterial luciferase-like
family: Bacterial luciferase (alkanal monooxygenase)
domain: Bacterial luciferase alpha chain, LuxA
species: Vibrio harveyi [TaxId: 669]

Probab=100.00  E-value=0  Score=26730.92  Aligned_cols=1  Identities=0%  Similarity=-0.793  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 M~fg~f~~~~~~~~~~~~~~~~~~~~~a~~ae~~Gf~~~~~~ehh~~~~~~~~~p~~~~a~~a~~T~~I~lgt~v~~~~~   80 (355)
T d1luca_           1 MKFGNFLLTYQPPELSQTEVMKRLVNLGKASEGCGFDTVWLLEHHFTEFGLLGNPYVAAAHLLGATETLNVGTAAIVLPT   80 (355)
T ss_dssp             CEEEEEECCCCCTTCCHHHHHHHHHHHHHHTGGGTCSEEEECCCCSBTTBCCSCHHHHHHHHHHHCSSCEEEEEEEEGGG
T ss_pred             CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf             91357668879999799999999999999999879989996235788877767999999999996791068542367887


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~P~~~A~~~atLd~ls~GR~~lGig~G~~~~~~~~~G~~~~~~~~~~~E~~~il~~l~~~~~~~~~G~~~~~~~~~~~P  160 (355)
T d1luca_          81 AHPVRQAEDVNLLDQMSKGRFRFGICRGLYDKDFRVFGTDMDNSRALMDCWYDLMKEGFNEGYIAADNEHIKFPKIQLNP  160 (355)
T ss_dssp             SCHHHHHHHHHHHHHHHTSCEEEEEECCCCHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHSEEEEESSSCEEEEEECSS
T ss_pred             CHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             65999999998887626997146542034300343210121001101578888887520243322222344444322366


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~p~q~~~~Pi~~a~~sp~~~~~Aa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gr~~~~~~~~~~~~~~v~~~~e~A~  240 (355)
T d1luca_         161 SAYTQGGAPVYVVAESASTTEWAAERGLPMILSWIINTHEKKAQLDLYNEVATEHGYDVTKIDHCLSYITSVDHDSNRAK  240 (355)
T ss_dssp             CCSSTTSSCEEECCCSHHHHHHHHHTTCCBEECSSSCHHHHHHHHHHHHHHHHHTTCCGGGCCCEEEEECEECSSHHHHH
T ss_pred             CCCCCCCCCCCHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             43567888620120322789999985067644354203331127899999887622454333210010011467799999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGtpe~v~~~l~~~~e~~Gv  320 (355)
T d1luca_         241 DICRNFLGHWYDSYVNATKIFDDSDQTKGYDFNKGQWRDFVLKGHKDTNRRIDYSYEINPVGTPEECIAIIQQDIDATGI  320 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC-----------------------------CCSGGGGGSSEESHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHCC
T ss_conf             99999999999986421013576132125421102344555403501678887427741564899999999999997599


Q ss_pred             ----------------------------------C
Q ss_conf             ----------------------------------9
Q 003496          278 ----------------------------------V  278 (815)
Q Consensus       278 ----------------------------------~  278 (815)
                                                        .
T Consensus       321 d~~~l~~~~~~~~~~~~~sl~lfae~V~P~lr~~~  355 (355)
T d1luca_         321 DNICCGFEANGSEEEIIASMKLFQSDVMPYLKEKQ  355 (355)
T ss_dssp             CEEEEECGGGCSHHHHHHHHHHHHHHTGGGCCCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             97999788999999999999999984101124899

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=26729.76  Aligned_cols=1  Identities=0%  Similarity=0.269  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~IG~TPLv~l~~ls~~~G~~~~i~~K~E~~nptGSfKdRg   80 (355)
T d1jbqa_           1 WIRPDAPSRCTWQLGRPASESPHHHTAPAKSPKILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRI   80 (355)
T ss_dssp             CCCTTSCCCCCCCTTSCGGGCCSCCCCCCCCCSEESSGGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTHHHH
T ss_pred             CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEECCCHHHHHCCCCEEEEEECCCCCCCCHHHHH
T ss_conf             98899998865548986888997666776556410318775489973788643277599977999977889755979999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 a~~~i~~a~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~  160 (355)
T d1jbqa_          81 SLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPES  160 (355)
T ss_dssp             HHHHHHHHHHHTCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CC
T ss_pred             HHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCEEEEECCCCCCHHHHH
T ss_conf             99999999972886667669972555400488999986257708996123168899999844976999216643101555


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~vep  240 (355)
T d1jbqa_         161 HVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDP  240 (355)
T ss_dssp             HHHHHHHHHHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             34699999973356513444576532001005650034441389998568622587037788888752487536986325


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~gs~~~~~~~~~~~~~~~~~i~gi~~~~~~~~~~~~~~~~~~~v~D~ea~~~~~~L~~~eGi~vepSsaa~laa~l~~~~  320 (355)
T d1jbqa_         241 EGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQ  320 (355)
T ss_dssp             TTCSCSSSGGGGCCSCCCCSCCSCCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHSCCCBCHHHHHHHHHHHHHGG
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHH
T ss_conf             67720133333322334522355456620111100120220358989999999999998095982899999999999977


Q ss_pred             ----------------------------------C
Q ss_conf             ----------------------------------9
Q 003496          278 ----------------------------------V  278 (815)
Q Consensus       278 ----------------------------------~  278 (815)
                                                        -
T Consensus       321 ~~~~g~~VVvvlcd~G~kY~s~~~~d~~~~~~~~~  355 (355)
T d1jbqa_         321 ELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFL  355 (355)
T ss_dssp             GCCTTCEEEEEECBBGGGGTTTTTCHHHHHHTTCC
T ss_pred             HCCCCCEEEEEECCCCCCCCCCCCCHHHHHHCCCC
T ss_conf             60896989999777976235642689999877899

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=26729.19  Aligned_cols=1  Identities=0%  Similarity=-1.324  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      +                                                                               
T Consensus         1 ~~~~~~~~~~~~f~i~~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~   80 (355)
T d2b1pa1           1 NQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIS   80 (355)
T ss_dssp             CCEEEEEETTEEEEEETTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             CCCEEEEECCCCEEECCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             99879995894045337759988962175859999999999989999998823369799999999999998648987648


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~f~~~~~~~~~~~~~iv~Ey~~~~l~~~~~~~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~~~kl  160 (355)
T d2b1pa1          81 LLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKI  160 (355)
T ss_dssp             CSEEECSCCSTTTCCEEEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEE
T ss_pred             EEEEEECCCCCCCCCEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             99897025643457626999841446778765038999999999999999998865221124567763211365443132


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~df~~~~~~~~~~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~  240 (355)
T d2b1pa1         161 LDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPE  240 (355)
T ss_dssp             CCCCC---------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHH
T ss_pred             ECHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHH
T ss_conf             01023211466655332214655558133147777877433356625789865989988897788999999720589879


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~Hpw~~~~~~~  320 (355)
T d2b1pa1         241 FMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP  320 (355)
T ss_dssp             HHTTSCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGGGCCH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCCCCCCCCCC
T ss_conf             99876566777764175435666421264333543210133379999999999876994579089999669420878881


Q ss_pred             ----------------------------------C
Q ss_conf             ----------------------------------9
Q 003496          278 ----------------------------------V  278 (815)
Q Consensus       278 ----------------------------------~  278 (815)
                                                        .
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (355)
T d2b1pa1         321 AEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMN  355 (355)
T ss_dssp             HHHTCCCC-------CCCCCCHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCC
T ss_conf             00458999877702332415999999999998629

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=26727.94  Aligned_cols=1  Identities=0%  Similarity=-0.593  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~~p~~~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           1 FVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD   80 (355)
T ss_dssp             CCCEEEEEECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEE
T ss_pred             CCCCCEEECCCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCC
T ss_conf             98875888983788699999889999999189909999899993999997899988999986999999996452443211


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d1nexb2          81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  160 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEEEC
T ss_conf             11111111110011111111111112322045543888689998567730012465200010000011234012101100


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  240 (355)
T d1nexb2         161 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ  240 (355)
T ss_dssp             SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             CCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCC
T ss_conf             22210000256334421144204443013110001100012332111111210021012456368763012211111111


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~  320 (355)
T d1nexb2         241 GHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANI  320 (355)
T ss_dssp             CCSSCCCEEEECSSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCT
T ss_pred             CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCEEEEEECCEEEEEECCCCCEEEEEE
T ss_conf             11111111123210033320111111111111110001246882299998499989999809979999999997988884


Q ss_pred             ----------------------------------C
Q ss_conf             ----------------------------------9
Q 003496          278 ----------------------------------V  278 (815)
Q Consensus       278 ----------------------------------~  278 (815)
                                                        +
T Consensus       321 ~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~~dfs  355 (355)
T d1nexb2         321 LKDADQIWSVNFKGKTLVAAVEKDGQSFLEILDFS  355 (355)
T ss_dssp             TTTCSEEEEEEEETTEEEEEEESSSCEEEEEEECC
T ss_pred             CCCCCCEEEEEECCCEEEEEEECCCCEEEEEEECC
T ss_conf             58999899999839919999989890999999588

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=0  Score=26727.37  Aligned_cols=1  Identities=0%  Similarity=-2.155  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      .                                                                               
T Consensus         1 ~~p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v   80 (355)
T d2bbkh_           1 DEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYV   80 (355)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCEE
T ss_conf             99717476589999999982664777671999999999499999899998569948999999996777642015899989


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d2bbkh_          81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT  160 (355)
T ss_dssp             EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred             EEEECCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEECCCCC
T ss_conf             99999999798898058864031179873499933887157732798820454305788376677058740473069963


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  240 (355)
T d2bbkh_         161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA  240 (355)
T ss_dssp             EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred             EEEECCCCCEEEEEECCCCEEEEEECCCCCCEECCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCC
T ss_conf             69993899989998347873799962433300011061021538997388746998299996589907998445784412


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 ~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~  320 (355)
T d2bbkh_         241 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST  320 (355)
T ss_dssp             HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEET
T ss_pred             EEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEEEC
T ss_conf             68543303510899980799767887406871265179975999867888498996689987799992899969999978


Q ss_pred             ----------------------------------C
Q ss_conf             ----------------------------------9
Q 003496          278 ----------------------------------V  278 (815)
Q Consensus       278 ----------------------------------~  278 (815)
                                                        .
T Consensus       321 ~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         321 GDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             TTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCEEEECCCC
T ss_conf             99989999999998999992869796589969999

>d1iq8a1 c.1.20.1 (A:6-360) Archaeosine tRNA-guanine transglycosylase, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: tRNA-guanine transglycosylase
family: tRNA-guanine transglycosylase
domain: Archaeosine tRNA-guanine transglycosylase, N-terminal domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=0  Score=26728.33  Aligned_cols=1  Identities=0%  Similarity=-1.556  Sum_probs=0.0

Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             9-------------------------------------------------------------------------------
Q 003496          277 C-------------------------------------------------------------------------------  277 (815)
Q Consensus       277 ~-------------------------------------------------------------------------------  277 (815)
                      -                                                                               
T Consensus         1 ~m~~F~i~~~d~~AR~G~l~~~~g~i~TP~fmpv~t~~~v~~~p~~l~~~g~~iil~NtYhl~~~p~~~~~~~~gGLh~F   80 (355)
T d1iq8a1           1 KMLKFEIKARDGAGRIGKLEVNGKKIETPAIMPVVNPKQMVVEPKELEKMGFEIIITNSYIIYKDEELRRKALELGIHRM   80 (355)
T ss_dssp             CCEEEEEEEEETTEEEEEEEETTEEEEESEEEEBCCSSSCSSCHHHHHHTTCCEEEEEHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEEECCCCEEEEEECCEEEECCCEEEEECCCCCCCCHHHHHHHCCCEEECCCCCCCCCCCCEEEECCCCHHHH
T ss_conf             95689998611772248999699666089155654587401489999983899892111306789873443124770443


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus        81 ~~w~~~ilTDSGgfQv~sl~~~~~~~e~~i~~q~~lgsDI~m~lD~~~~~~~~~~~~~~s~~rt~~~~~~~~~~~~~~~~  160 (355)
T d1iq8a1          81 LDYNGIIEVDSGSFQLMKYGSIEVSNREIIEFQHRIGVDIGTFLDIPTPPDAPREQAVKELEITLSRAREAEEIKEIPMN  160 (355)
T ss_dssp             HTCCSEEEEECSTTHHHHSSCCSSCHHHHHHHHHHTTCSBBCCCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHCCSCBB
T ss_pred             HCCCCCEECCCCCCEEECCCHHHHHHHHHHEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             02789623055663121120011244566201204576179840346787777999999999999988887653205642


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       161 givqGG~~~dLR~~sa~~l~~~~~dG~aiGG~~~~~~~~~~~~~~~~i~~~~~~Lp~~kPrylmGvG~P~di~~~v~~Gi  240 (355)
T d1iq8a1         161 ATIQGSTYTDLRRYAARRLSSMNFEIHPIGGVVPLLESYRFRDVVDIVISSKMALRPDRPVHLFGAGHPIVFALAVAMGV  240 (355)
T ss_dssp             CCBCCTTCHHHHHHHHHHHHHSCCSBEEECSCHHHHHTTCHHHHHHHHHHHHHHSCTTSCEEETTCCCGGGHHHHHHTTC
T ss_pred             CEECCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHCC
T ss_conf             00012257317699986654178103201166765204789999998864101486336444137887567999998558


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 003496          278 --------------------------------------------------------------------------------  277 (815)
Q Consensus       278 --------------------------------------------------------------------------------  277 (815)
                                                                                                      
T Consensus       241 D~FD~~~p~r~ar~g~~~t~~g~~~l~~~d~~pC~C~~C~~~srayl~HL~~~~e~~LltiHNl~~~~~l~~~iR~aI~~  320 (355)
T d1iq8a1         241 DLFDSASYALYAKDDRYMTPEGTKRLDELDYFPCSCPVCSKYTPQELREMPKEERTRLLALHNLWVIKEEIKRVKQAIKE  320 (355)
T ss_dssp             CEEEESHHHHHHHTTEEEETTEEEEGGGCSSCCCCSTTTTTCCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             96520588887640332157885235411013457852140589999976346488999999999999999999999985


Q ss_pred             ----------------------------------C
Q ss_conf             ----------------------------------9
Q 003496          278 ----------------------------------V  278 (815)
Q Consensus       278 ----------------------------------~  278 (815)
                                                        .
T Consensus       321 g~f~~~~e~~~~~~p~~~~~~~~l~~~~~~~~~~~  355 (355)
T d1iq8a1         321 GELWRLVDERARSHPKLYSAYKRLLEHYTFLEEFE  355 (355)
T ss_dssp             TCHHHHHHHHHTTCHHHHHHHHHHHHCHHHHHHHS
T ss_pred             CCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999869999999999998888875019