Citrus Sinensis ID: 003509

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810----

MWLLVDMQRLSSPATGILCSSKLHNNETKLWGFGFRFKLQRRNESVRRRVKLVVSAELSKSFSLNLGLDSQVIQSNDPSQLPWIGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGECTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLSGRSSIMNAYRVADISMTEDQLPPLAIFRSEMKRCCESMHIALENYLTPEDVRSLDVWRKLQRLKNVCYDSGFPRGDDYPIHTLFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSNDVLLKDSTRTRKLKASAGKFLLEEKYETVKENQDEIQTKNGVFGFGLSVDMDKRNQSNGAYKGLSSVEGVESAKEVDTAVGSLGTTFSKETDPFKAQVPPSNFVSKKEMSRFFRSKTTSPPRYFNYQSKRMDVLPSEIVSSGPVSGVAETRYSQWSLSGNNLSPNHQNLPAGSEKSSDNNGYVSAGCSTNGFDRGDRSSMTEANLLTSVTKNLDEQVISSSVRDVQRSNGKPSNSGDDDLGPIVGNMCASSTGVVRVQSRKKAEMFLVRTDGFSCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLSLFHSL

cEEEEEEcccccccccEEEccccccccccEEEccccEEccccccccccEEEEEEEHHcccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccccccccHHHcHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHcccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccEEcccccEEEEEEcccHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHcccccccccccccccccccccccEEEEEcccHHHHHHHHHHccccccEEEEEccccccccccccccHHHHHHHHHHcccc

cEEEEEccccccccEEEEEccEccccccEEEEcccEEEEEEccccHHEEEEEEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHcccHHHHccccccHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccccccccccccEEEccccccccccccEEEEEccccccHHHHHHHHHcccEEEEEccHHccccHHHHHHHHHHHccccEEEEEEEEEccccccHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHHHHHHHccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccHcccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEcccEcEEcccccccEEEEccccccEEEEEcccccEEEEEEccccHHHHHHHHHHHHHHHccccEEEEcHHHHHHHHcccccccEEEEEccccccccccEEEEEEEcccHHHHHHHHHcccccccEEEEEcccccccccccHHHHHHHHEHHHHHHcc

MWLLVDmqrlsspatgilcssklhnnetklwgfgfrfKLQRRNESVRRRVKLVVSAELSKsfslnlgldsqviqsndpsqlpwigpvpgdiAEVEAYCRIFRAAERLHAALMDTlcnpltgectvsyeftpeekplleDKIVSVLGCMLSLlnkgredvlSGRSSIMNAYRVadismtedqlpplaIFRSEMKRCCESMHIALenyltpedvrSLDVWRKLQRLKnvcydsgfprgddypihtlfanwspvylsnskddiaskdsevtfcrggqvTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIpvevrtaptmEQVEKFASLVsnsskkplylhskeGVWRTYAMVSRWRQYMARCASqisgqtitsndvllkdstRTRKLKASAGKFLLEEKYETVKENQDeiqtkngvfgFGLSVDmdkrnqsngaykglssvegvesakEVDTAVGslgttfsketdpfkaqvppsnfvskkemsrffrskttsppryfnyqskrmdvlpseivssgpvsgvaetrysqwslsgnnlspnhqnlpagsekssdnngyvsagcstngfdrgdrssmteANLLTSVTKNLDEQVISSSVrdvqrsngkpsnsgdddlgpivgnmcasstgvvrvqsrKKAEMFLVRtdgfscnrekvtesslafthpstqqqmlmwkttprtvlvlkkpgpalMEEAKEVASFLYHQEkmnilvepdvhdifaripgfgfvqtfYLQDTSDLHERVDFvaclggdgvilhasnlfrgavppvisfnlgslgfltshpvssylnSLCFLSLFHSL

MWLLVDMqrlsspatgilcssklhnnetklwgfgfrfklqrrnesvrrRVKLVVSaelsksfslnlGLDSQVIQSNDPSQLPWIGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGECTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNkgredvlsGRSSIMNAYRVADISMTEDQLPPLAIFRSEMKRCCESMHIAlenyltpedvrSLDVWRKLQRLKNVCYDSGFPRGDDYPIHTLFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAiddailsgkveLIKIPVEVRTAPTMEQVEKFAslvsnsskkplylhskegvWRTYAMVSRWRQYMARCAsqisgqtitsndvllkdstrtrklkasagkflleekyetvkenqdeiqtkngVFGFGLSVDMDKRNQSNGAYKGLSSVEGVESAKEVDTAVGSLgttfsketdpfkaqvppsnfvskkemsrffrskttsppryfnyqskrMDVLPSEIVSSGPVSGVAETRYSQWSLSGNNLSPNHQNLPAGSEKSSDNNGYVSAGCStngfdrgdrsSMTEANLLTsvtknldeqvisssvrdvqrsngkpsnsgdddlgpiVGNMCASStgvvrvqsrkKAEMFLvrtdgfscnrEKVTESSlafthpstqqqmlmwkTTPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLSLFHSL

**LLVDM*****PATGILCSSKLHNNETKLWGFGFRFKLQRRNESVRRRVKLVVSAELSKSFSLNLGLDSQVIQSN*PSQLPWIGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGECTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLSGRSSIMNAYRVADISMTEDQLPPLAIFRSEMKRCCESMHIALENYLTPEDVRSLDVWRKLQRLKNVCYDSGFPRGDDYPIHTLFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLV*****KPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSNDVLLK*************KFLLEEKY***********TKNGVFGFGLSV*************************************************************************************************************************************************************************************************IVGNMCASSTGVVRVQSRKKAEMFLVRTDGFSCNREKV*****AF*******QMLMWKTTPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLSLF***

MWLLVD*QRLSSPATGILCSSKLHNNETKLWGFGF****************LVVSAELSKSFSL*LG**********PSQLPWIGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGECTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLSG***************TEDQLPPLAIFRSEMKRCCESMHIALENYLTPEDVRSLDVWRKLQRLKNVCYDSGFPRGDDYPIHTLFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMA***************************************************************************************************************************************************************************************************************************************************************************************************************************TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLSLFHSL

MWLLVDMQRLSSPATGILCSSKLHNNETKLWGFGFRFKLQRRNESVRRRVKLVVSAELSKSFSLNLGLDSQVIQSNDPSQLPWIGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGECTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLSGRSSIMNAYRVADISMTEDQLPPLAIFRSEMKRCCESMHIALENYLTPEDVRSLDVWRKLQRLKNVCYDSGFPRGDDYPIHTLFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSNDVLLKDSTRTRKLKASAGKFLLEEKYETVKENQDEIQTKNGVFGFGLSVDMDKRNQSNGAYKGLSSVEGVESAKEVDTAVGSLGTTFSKETDPFKAQVPPSNFVSKKEMSRFFRSKTTSPPRYFNYQSKRMDVLPSEIVSSGPVSGVAETRYSQWSLSGNNLSPNHQ************NGYVSAGCSTNGFDRGDRSSMTEANLLTSVTKNLDEQVIS****************GDDDLGPIVGNMCASSTGVVRVQSRKKAEMFLVRTDGFSCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLSLFHSL

MWLLVDMQRLSSPATGILCSSKLHNNETKLWGFGFRFKLQRRNESVRRRVKLVVSAELSKSFSLNLGLDSQVIQSNDPSQLPWIGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGECTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLSGR****************DQLPPLAIFRSEMKRCCESMHIALENYLTPEDVRSLDVWRKLQRLKNVCYDSGFPRGDDYPIHTLFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISG**********************************************************************************************KETDPFKAQVPPSNFVSKKEMSRFFRSKTTSPPRYFNYQ************************************************************************************************************************CASSTGVVRVQSRKKAEMFLVRTDGFSCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLSLFHSL

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		814	2.2.26 [Sep-21-2011]
Q9C5W3		985	NAD kinase 2, chloroplast	yes	no	0.928	0.767	0.584	0.0
Q53NI2		981	Probable NAD kinase 2, ch	yes	no	0.909	0.754	0.528	0.0
Q5JK52		532	Probable NAD kinase 1 OS=	no	no	0.157	0.240	0.381	2e-19
Q60E60		494	Putative NAD kinase 3 OS=	no	no	0.157	0.259	0.398	1e-18
P58058		439	NAD kinase OS=Mus musculu	yes	no	0.138	0.257	0.428	3e-18
Q56YN3		524	NAD(H) kinase 1 OS=Arabid	no	no	0.157	0.244	0.374	6e-18
O95544		446	NAD kinase OS=Homo sapien	yes	no	0.137	0.251	0.436	1e-17
Q6LA56		393	Uncharacterized kinase C3	yes	no	0.136	0.282	0.330	2e-11
Q9UT98		386	NADH kinase pos5, mitocho	no	no	0.137	0.290	0.328	3e-11
Q06892		414	NADH kinase POS5, mitocho	yes	no	0.142	0.280	0.325	3e-10

>sp\|Q9C5W3\|NADK2_ARATH NAD kinase 2, chloroplastic OS=Arabidopsis thaliana GN=NADK2 PE=1 SV=1	Back alignment and function desciption

 Score =  899 bits (2323), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/823 (58%), Positives = 598/823 (72%), Gaps = 67/823 (8%)

Query: 7   MQRLSSPATGILCSSKLH-----NNETKLWGFGFRFKLQRRNESVRRRVKLVVSAELSKS 61
           M RLS PATGI  SS+L      +++ +L  FGFRF+  R +   +RR++ V+ A+LS++
Sbjct: 13  MSRLS-PATGI--SSRLRFSIGLSSDGRLIPFGFRFR--RNDVPFKRRLRFVIRAQLSEA 67

Query: 62  FSLNLGLDSQVIQSNDPSQLPWIGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTG 121
           FS +LGLDSQ ++S D S LPWIGPVPGDIAEVEAYCRIFR+AERLH ALM+TLCNP+TG
Sbjct: 68  FSPDLGLDSQAVKSRDTSNLPWIGPVPGDIAEVEAYCRIFRSAERLHGALMETLCNPVTG 127

Query: 122 ECTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLSGRSSIMNAYRVADISMTEDQ 181
           EC V Y+F+PEEKPLLEDKIVSVLGC+LSLLNKGR+++LSGRSS MN++ + D+ + E+ 
Sbjct: 128 ECRVPYDFSPEEKPLLEDKIVSVLGCILSLLNKGRKEILSGRSSSMNSFNLDDVGVAEES 187

Query: 182 LPPLAIFRSEMKRCCESMHIALENYLTPEDVRSLDVWRKLQRLKNVCYDSGFPRGDDYPI 241
           LPPLA+FR EMKRCCES+HIALENYLTP+D RS  VWRKLQ+LKNVCYD+GFPR D+YP 
Sbjct: 188 LPPLAVFRGEMKRCCESLHIALENYLTPDDERSGIVWRKLQKLKNVCYDAGFPRSDNYPC 247

Query: 242 HTLFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKD 301
            TLFANW P+Y SN+K+DI S +SE+ F RGGQVT+EGLKWL+E G+KTIVD+RAE VKD
Sbjct: 248 QTLFANWDPIYSSNTKEDIDSYESEIAFWRGGQVTQEGLKWLIENGFKTIVDLRAEIVKD 307

Query: 302 NFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRT 361
            FY+ A+DDAI  GK+ +++IP++VR AP  EQVE FAS+VS+SSK+P+Y+HSKEGVWRT
Sbjct: 308 TFYQTALDDAISLGKITVVQIPIDVRMAPKAEQVELFASIVSDSSKRPIYVHSKEGVWRT 367

Query: 362 YAMVSRWRQYMARCASQISGQTITSNDVLLKDSTRTRKLKASA---GKFLLEEKYETVKE 418
            AMVSRW+QYM R    I+ +   S +   ++ + T KL ++A   GK + +E+ + V E
Sbjct: 368 SAMVSRWKQYMTR---PITKEIPVSEESKRREVSET-KLGSNAVVSGKGVPDEQTDKVSE 423

Query: 419 NQDEIQTKNGVFGFGLSVDMDKRNQSNGAYKGLSSVEGVESAKEVDTAVGSLGTTFSKET 478
                             ++D R+ S+ + K     EG  SA E           F+  +
Sbjct: 424 IN----------------EVDSRSASSQS-KESGRFEGDTSASE-----------FNMVS 455

Query: 479 DPFKAQVPPSNFVSKKEMSRFFRSKTTSPPRYFNYQSKRMDVLPS------------EIV 526
           DP K+QVPP N  S+KEMS+F +SK+ +P  Y    SK +  +P+            +IV
Sbjct: 456 DPLKSQVPPGNIFSRKEMSKFLKSKSIAPAGYLTNPSKILGTVPTPQFSYTGVTNGNQIV 515

Query: 527 SSGPVSGVAETRYSQWSLSGNNLSPNHQNLPAGSEKSSDNNGYVSAGCSTNGFDRGDR-S 585
               +  +AET  S  +L    L  + Q+L  G+ K S  NG V A  +TN     +R +
Sbjct: 516 DKDSIRRLAETGNSNGTL----LPTSSQSLDFGNGKFS--NGNVHASDNTNKSISDNRGN 569

Query: 586 SMTEANLLTSVTKNLDEQVISSSVRD--VQRSN-GKPSNSGDDDLGPIVGNMCASSTGVV 642
             + A +    + NL   V S SVR+   QR+N G  S+S DD+ G I GNMCAS+TGVV
Sbjct: 570 GFSAAPIAVPPSDNLSRAVGSHSVRESQTQRNNSGSSSDSSDDEAGAIEGNMCASATGVV 629

Query: 643 RVQSRKKAEMFLVRTDGFSCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPA 702
           RVQSRKKAEMFLVRTDG SC REKVTESSLAFTHPSTQQQML+WKTTP+TVL+LKK G  
Sbjct: 630 RVQSRKKAEMFLVRTDGVSCTREKVTESSLAFTHPSTQQQMLLWKTTPKTVLLLKKLGQE 689

Query: 703 LMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACL 762
           LMEEAKE ASFLYHQE MN+LVEP+VHD+FARIPGFGFVQTFY+QDTSDLHERVDFVACL
Sbjct: 690 LMEEAKEAASFLYHQENMNVLVEPEVHDVFARIPGFGFVQTFYIQDTSDLHERVDFVACL 749

Query: 763 GGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSL 805
           GGDGVILHASNLF+GAVPPV+SFNLGSLGFLTSHP   +   L
Sbjct: 750 GGDGVILHASNLFKGAVPPVVSFNLGSLGFLTSHPFEDFRQDL 792

Involved in chlorophyll synthesis and chloroplast protection against oxidative damage.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 2EC: 3

>sp\|Q53NI2\|NADK2_ORYSJ Probable NAD kinase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os11g0191400 PE=2 SV=1	Back alignment and function description

>sp\|Q5JK52\|NADK1_ORYSJ Probable NAD kinase 1 OS=Oryza sativa subsp. japonica GN=Os01g0957000 PE=2 SV=1	Back alignment and function description

>sp\|Q60E60\|NADK3_ORYSJ Putative NAD kinase 3 OS=Oryza sativa subsp. japonica GN=Os05g0388400 PE=3 SV=2	Back alignment and function description

>sp\|P58058\|NADK_MOUSE NAD kinase OS=Mus musculus GN=Nadk PE=1 SV=2	Back alignment and function description

>sp\|Q56YN3\|NADK1_ARATH NAD(H) kinase 1 OS=Arabidopsis thaliana GN=NADK1 PE=1 SV=2	Back alignment and function description

>sp\|O95544\|NADK_HUMAN NAD kinase OS=Homo sapiens GN=NADK PE=1 SV=1	Back alignment and function description

>sp\|Q6LA56\|YF4B_SCHPO Uncharacterized kinase C3H5.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H5.11 PE=3 SV=1	Back alignment and function description

>sp\|Q9UT98\|POS5_SCHPO NADH kinase pos5, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pos5 PE=3 SV=2	Back alignment and function description

>sp\|Q06892\|POS5_YEAST NADH kinase POS5, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POS5 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		814
317106685		1017	JMS09K11.5 [Jatropha curcas]	0.974	0.779	0.642	0.0
359492366		1027	PREDICTED: NAD kinase 2, chloroplastic-l	0.975	0.773	0.653	0.0
255558574		1003	poly(p)/ATP NAD kinase, putative [Ricinu	0.970	0.787	0.642	0.0
224066797		963	predicted protein [Populus trichocarpa]	0.927	0.784	0.635	0.0
224082344		927	predicted protein [Populus trichocarpa]	0.884	0.776	0.643	0.0
356509371		986	PREDICTED: NAD kinase 2, chloroplastic-l	0.925	0.763	0.605	0.0
356552711		1012	PREDICTED: NAD kinase 2, chloroplastic-l	0.928	0.747	0.601	0.0
297845136		983	hypothetical protein ARALYDRAFT_889629 [	0.929	0.770	0.587	0.0
18395013		985	NAD kinase 2 [Arabidopsis thaliana] gi\|7	0.928	0.767	0.584	0.0
334182748		999	NAD kinase 2 [Arabidopsis thaliana] gi\|3	0.928	0.756	0.574	0.0

>gi\|317106685\|dbj\|BAJ53187.1\| JMS09K11.5 [Jatropha curcas]	Back alignment and taxonomy information

 Score = 1044 bits (2700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/822 (64%), Positives = 630/822 (76%), Gaps = 29/822 (3%)

Query: 4   LVDMQRLSSPATGIL---CSSKLHNNETKLWGFGFRFKLQRRNESVRRRVKLVVSAELSK 60
            V M +LS P TG+L   CS KL N + K  G GF F+LQ ++   +R++K VV+AELS+
Sbjct: 12  FVAMNQLS-PVTGVLPCLCSYKL-NRDAKFVGSGFGFELQVKDR-FKRKLKFVVNAELSR 68

Query: 61  SFSLNLGLDSQVIQSNDPSQLPWIGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLT 120
           +FS+N   DSQ++Q +D SQLPWIGPVPGDIAEVEAYCRIFR AERLHAALMDTLCNP+T
Sbjct: 69  AFSVNFDWDSQIVQPHDISQLPWIGPVPGDIAEVEAYCRIFRTAERLHAALMDTLCNPVT 128

Query: 121 GECTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLSGRSSIMNAYRVADISMTED 180
           GEC+VSY+F+PEEKPLLEDKIVSVLGCMLSLLN+G+EDVLSGR+SIM ++  +D+S  ED
Sbjct: 129 GECSVSYDFSPEEKPLLEDKIVSVLGCMLSLLNRGKEDVLSGRASIMTSFS-SDVSFMED 187

Query: 181 QLPPLAIFRSEMKRCCESMHIALENYLTPEDVRSLDVWRKLQRLKNVCYDSGFPRGDDYP 240
           +LPPLAIFRSEMKRCCES+H+ALENYLTP+D RSLDVWRKLQRLKNVCYDSG+PR DDYP
Sbjct: 188 KLPPLAIFRSEMKRCCESLHVALENYLTPDDGRSLDVWRKLQRLKNVCYDSGYPRLDDYP 247

Query: 241 IHTLFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVK 300
            HTLFANWSPV+LS+SK+DIASK S+V F +GGQVTEEGL WL+EKG+KTI+D+RAE +K
Sbjct: 248 CHTLFANWSPVHLSSSKEDIASKHSDVAFWKGGQVTEEGLNWLLEKGFKTIIDLRAEIIK 307

Query: 301 DNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWR 360
           DNFY+ A+D AILSGKVELIKIPVEV  AP++E VEKFASLVS+ SKKP+YLHSKEG WR
Sbjct: 308 DNFYQEAVDAAILSGKVELIKIPVEVMMAPSVEHVEKFASLVSDCSKKPIYLHSKEGAWR 367

Query: 361 TYAMVSRWRQYMARCASQISGQTITSNDVLLKDSTRTRKLKA---SAGKFLLEEKYETVK 417
           T AM+SRWRQYM R ASQ     IT +D   +++  TR+ +A   +  + L+E++  +++
Sbjct: 368 TSAMISRWRQYMNRSASQF----ITRSDSGPQETNETRESQAPSVTEERSLMEQENGSLQ 423

Query: 418 ENQDEIQTKNGVFGFGLSVDMDKRNQS-NGAYKGLSSVEGVESAKEVDTAVGSLGTTFSK 476
           +  D +   NGV    +S   D+  QS NG   G  SV+G  S + VD   G       +
Sbjct: 424 QALDNLHGTNGVSHEVVSSFRDETGQSINGTDNGFVSVQGTASTETVDKG-GRPSVNIRR 482

Query: 477 ETDPFKAQVPPSNFVSKKEMSRFFRSKTTSPPRYFNYQSKRMDVLP------------SE 524
           ETDP KAQVPP N  SK+EMS+FFR+K  SPPRY NY+  +   LP             E
Sbjct: 483 ETDPLKAQVPPCNIFSKEEMSQFFRTKRVSPPRYSNYRFSKFKKLPVSGERHIGMVKTRE 542

Query: 525 IVSSGPVSGVAETRYSQWSLSGNNLSPNHQNLPAGSEKSSDNNGYVSAGCSTNGFDRGDR 584
           I    P+SG+ ET+ S  S+S  NLSP+ ++      K    N ++S G   N  D  +R
Sbjct: 543 IKDVDPISGLGETKRSNGSVSNGNLSPDRKSSYVEGLKHLKGNSFISVGSGLNAVDERER 602

Query: 585 SSMTEANLLTSVTKNLDEQVISSSVRDVQRSNGKPSNS-GDDDLGPIVGNMCASSTGVVR 643
            S+ E N+ T+V+ +L E V S S+ +V + NG  S+   DD+LG I GNMCAS+TGVVR
Sbjct: 603 YSVPETNVNTTVSDSLKEHVTSKSIEEVHKKNGVASSGLSDDELGSIEGNMCASATGVVR 662

Query: 644 VQSRKKAEMFLVRTDGFSCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPAL 703
           VQSRKKAEMFLVRTDGFSC REKVTESSLAFTHPSTQQQMLMWK+TP+TVL+LKK G  L
Sbjct: 663 VQSRKKAEMFLVRTDGFSCTREKVTESSLAFTHPSTQQQMLMWKSTPKTVLLLKKLGQEL 722

Query: 704 MEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLG 763
           MEEAKEVASFLYHQEKMN+LVEPDVHDIFARIPGFGF+QTFY QDTSDLHERVD VACLG
Sbjct: 723 MEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFIQTFYSQDTSDLHERVDLVACLG 782

Query: 764 GDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSL 805
           GDGVILHASNLFRGAVPPV+SFNLGSLGFLTSH    Y   L
Sbjct: 783 GDGVILHASNLFRGAVPPVVSFNLGSLGFLTSHSFDDYKQDL 824

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359492366\|ref\|XP_002284607.2\| PREDICTED: NAD kinase 2, chloroplastic-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255558574\|ref\|XP_002520312.1\| poly(p)/ATP NAD kinase, putative [Ricinus communis] gi\|223540531\|gb\|EEF42098.1\| poly(p)/ATP NAD kinase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224066797\|ref\|XP_002302220.1\| predicted protein [Populus trichocarpa] gi\|222843946\|gb\|EEE81493.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224082344\|ref\|XP_002306654.1\| predicted protein [Populus trichocarpa] gi\|222856103\|gb\|EEE93650.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356509371\|ref\|XP_003523423.1\| PREDICTED: NAD kinase 2, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|356552711\|ref\|XP_003544706.1\| PREDICTED: NAD kinase 2, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|297845136\|ref\|XP_002890449.1\| hypothetical protein ARALYDRAFT_889629 [Arabidopsis lyrata subsp. lyrata] gi\|297336291\|gb\|EFH66708.1\| hypothetical protein ARALYDRAFT_889629 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|18395013\|ref\|NP_564145.1\| NAD kinase 2 [Arabidopsis thaliana] gi\|75169003\|sp\|Q9C5W3.1\|NADK2_ARATH RecName: Full=NAD kinase 2, chloroplastic; Short=AtNADK-2; Flags: Precursor gi\|12597471\|gb\|AAG60064.1\|AF337912_1 unknown protein [Arabidopsis thaliana] gi\|20466656\|gb\|AAM20645.1\| unknown protein [Arabidopsis thaliana] gi\|332192009\|gb\|AEE30130.1\| NAD kinase 2 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|334182748\|ref\|NP_001185057.1\| NAD kinase 2 [Arabidopsis thaliana] gi\|332192010\|gb\|AEE30131.1\| NAD kinase 2 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		814
UNIPROTKB\|Q5QPS5		206	NADK "NAD kinase" [Homo sapien	0.137	0.543	0.445	1.8e-18
UNIPROTKB\|E2R4Z6		495	NADK "Uncharacterized protein"	0.138	0.228	0.436	4e-17
UNIPROTKB\|O95544		446	NADK "NAD kinase" [Homo sapien	0.137	0.251	0.445	5.9e-17
UNIPROTKB\|D4AAA8		389	Nadk "Protein Nadk" [Rattus no	0.138	0.290	0.436	1.2e-16
UNIPROTKB\|F5GXR5		414	NADK "NAD kinase" [Homo sapien	0.137	0.270	0.445	1.7e-16
MGI\|MGI:2183149		439	Nadk "NAD kinase" [Mus musculu	0.138	0.257	0.436	2.1e-16
UNIPROTKB\|F1NVZ0		445	NADK "Uncharacterized protein"	0.138	0.253	0.436	2.2e-16
UNIPROTKB\|F1MCL6		453	NADK "Uncharacterized protein"	0.138	0.249	0.428	5e-16
ZFIN\|ZDB-GENE-050417-39		438	nadka "NAD kinase a" [Danio re	0.147	0.273	0.409	1.3e-15
TAIR\|locus:2092935		530	NADK1 "NAD kinase 1" [Arabidop	0.157	0.241	0.372	4.7e-15

UNIPROTKB\|Q5QPS5 NADK "NAD kinase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

 Score = 234 (87.4 bits), Expect = 1.8e-18, P = 1.8e-18
 Identities = 53/119 (44%), Positives = 79/119 (66%)

Query:   682 QMLMWKTTPRTVLVLKKPGPA-LMEEAKEVASFLYHQEKMNILVEPDVHD--IFARIPGF 738
             Q L W  +P++VLV+KK   A L++  KE+ + L  +E M + VE  V +    A    F
Sbjct:    64 QRLTWNKSPKSVLVIKKMRDASLLQPFKELCTHLM-EENMIVYVEKKVLEDPAIASDESF 122

Query:   739 GFVQT-F--YLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLT 794
             G V+  F  + +D  D+  ++DF+ CLGGDG +L+AS+LF+G+VPPV++F+LGSLGFLT
Sbjct:   123 GAVKKKFCTFREDYDDISNQIDFIICLGGDGTLLYASSLFQGSVPPVMAFHLGSLGFLT 181

GO:0003951 "NAD+ kinase activity" evidence=IEA

GO:0006741 "NADP biosynthetic process" evidence=IEA

UNIPROTKB\|E2R4Z6 NADK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|O95544 NADK "NAD kinase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|D4AAA8 Nadk "Protein Nadk" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F5GXR5 NADK "NAD kinase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:2183149 Nadk "NAD kinase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NVZ0 NADK "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MCL6 NADK "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050417-39 nadka "NAD kinase a" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

TAIR\|locus:2092935 NADK1 "NAD kinase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C5W3	NADK2_ARATH	2, ., 7, ., 1, ., 2, 3	0.5844	0.9287	0.7675	yes	no
Q53NI2	NADK2_ORYSJ	2, ., 7, ., 1, ., 2, 3	0.5284	0.9090	0.7543	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1	0.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00015446001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (982 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00024584001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (522 aa)	•	•	•	0.456
	GSVIVG00006686001	SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (724 aa)	•			0.455

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		814
PLN02727		986	PLN02727, PLN02727, NAD kinase	0.0
PLN02935		508	PLN02935, PLN02935, Bifunctional NADH kinase/NAD(+	1e-24
COG0061		281	COG0061, nadF, NAD kinase [Coenzyme metabolism]	2e-10
pfam01513		243	pfam01513, NAD_kinase, ATP-NAD kinase	1e-08
PRK03372		306	PRK03372, ppnK, inorganic polyphosphate/ATP-NAD ki	3e-07
PRK04539		296	PRK04539, ppnK, inorganic polyphosphate/ATP-NAD ki	4e-06
PRK01231		295	PRK01231, ppnK, inorganic polyphosphate/ATP-NAD ki	3e-05
PRK03708		277	PRK03708, ppnK, inorganic polyphosphate/ATP-NAD ki	3e-05
PRK14076		569	PRK14076, pnk, inorganic polyphosphate/ATP-NAD kin	5e-05
PRK01911		292	PRK01911, ppnK, inorganic polyphosphate/ATP-NAD ki	2e-04
PRK14077		287	PRK14077, pnk, inorganic polyphosphate/ATP-NAD kin	0.004

>gnl\|CDD\|215386 PLN02727, PLN02727, NAD kinase	Back alignment and domain information

 Score = 1228 bits (3178), Expect = 0.0
 Identities = 535/815 (65%), Positives = 620/815 (76%), Gaps = 38/815 (4%)

Query: 7   MQRLSSPATGIL----CSSKLHNNETKLWGFGFRFKLQRRNESVRRRVKLVVSAELSKSF 62
           M RLS P TGIL    CS KL N++ KL GFGF F   +R E ++RR+K VVSAELSKSF
Sbjct: 1   MARLS-PVTGILSSCLCSVKL-NSDGKLLGFGFGF--WQRKEPLKRRLKFVVSAELSKSF 56

Query: 63  SLNLGLDSQVIQSNDPSQLPWIGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGE 122
           S NLGLDSQ  QS D SQLPWIGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGE
Sbjct: 57  SSNLGLDSQNFQSRDLSQLPWIGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGE 116

Query: 123 CTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLSGRSSIMNAYRVADISMTEDQL 182
           C VSY+FT EEKPLLEDKIVSVLGCMLSLLNKGRE+VLSGRSSIM+++R +++S  ED+L
Sbjct: 117 CPVSYDFTSEEKPLLEDKIVSVLGCMLSLLNKGREEVLSGRSSIMSSFRGSEVSAMEDKL 176

Query: 183 PPLAIFRSEMKRCCESMHIALENYLTPEDVRSLDVWRKLQRLKNVCYDSGFPRGDDYPIH 242
           PPLAIFR EMKRCCES+H+ALENYLTP+D RSLDVWRKLQRLKNVCYD+GFPR DDYP H
Sbjct: 177 PPLAIFRGEMKRCCESLHVALENYLTPDDDRSLDVWRKLQRLKNVCYDAGFPRSDDYPCH 236

Query: 243 TLFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDN 302
           TLFANW+PVYLS SK+DI SK+SE  F RGGQVTEEGLKWL+EKG+KTIVD+RAE VKDN
Sbjct: 237 TLFANWNPVYLSTSKEDIDSKESEAAFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDN 296

Query: 303 FYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTY 362
           FY+AA+DDAI SGK+E++KIPVEVRTAP+ EQVEKFASLVS+SSKKP+YLHSKEGVWRT 
Sbjct: 297 FYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSSKKPIYLHSKEGVWRTS 356

Query: 363 AMVSRWRQYMARCASQISGQTITSNDVLLKDSTRTRKLKASAGKFLLEEKYETVKENQDE 422
           AMVSRW+QYM R A ++ GQ    N                 G   L+++  +++E  D+
Sbjct: 357 AMVSRWKQYMTRSAERLLGQNSVVN-----------------GNGKLDQETGSLQETNDK 399

Query: 423 IQTKNGVF-GFGLSVDMDKRNQSNGAYKGLSSVEGVESAKEVDTAVGSLGTTFSKETDPF 481
             + NG   G   S+  +    +  AY  L S +  +  + V T V S  + F+ E+DP 
Sbjct: 400 DSSSNGSESGESCSIKDETGRSNLEAYNSLPSDQSTQQGEMVGTGVESQ-SNFNMESDPL 458

Query: 482 KAQVPPSNFVSKKEMSRFFRSKTTSPPRYFNYQSKRMDVLP----------SEIVSSGPV 531
           KAQVPP +  SKKEMS+FFRSK   PP Y NY+ K  + LP          S+I  +  +
Sbjct: 459 KAQVPPCDVFSKKEMSKFFRSKKIYPPTYLNYRRKGFEKLPVPQFTGVTQGSKIDDTDSI 518

Query: 532 SGVAETRYSQWSLSGNNLSPNHQNLPAGSEKSSDNNGYVSAGCSTNGFDRGDRSSMTEAN 591
           S + ET  S   +S  N SP +Q+    + KSS+ + + S G  +      + +      
Sbjct: 519 SRLVETGRSNGLVSEKNSSPKYQSSEFDNGKSSNGSSFASDGSLSVASSITNGNPSNNGA 578

Query: 592 LLTSVTKNLDEQVISSSVRDVQRSNGK-PSNSGDDDLGPIVGNMCASSTGVVRVQSRKKA 650
             ++V+ NL+  V S SVR+ QRSNGK    S DD+LG I GNMCAS+TGVVRVQSR+KA
Sbjct: 579 SSSTVSDNLERSVASVSVRESQRSNGKASLGSSDDELGAIEGNMCASATGVVRVQSRRKA 638

Query: 651 EMFLVRTDGFSCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEV 710
           EMFLVRTDGFSC REKVTESSLAFTHPSTQQQMLMWK+TP+TVL+LKK G  LMEEAKEV
Sbjct: 639 EMFLVRTDGFSCTREKVTESSLAFTHPSTQQQMLMWKSTPKTVLLLKKLGQELMEEAKEV 698

Query: 711 ASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770
           ASFLYHQEKMN+LVEPDVHDIFARIPGFGFVQTFY QDTSDLHERVDFVACLGGDGVILH
Sbjct: 699 ASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLGGDGVILH 758

Query: 771 ASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSL 805
           ASNLFRGAVPPV+SFNLGSLGFLTSH    +   L
Sbjct: 759 ASNLFRGAVPPVVSFNLGSLGFLTSHYFEDFRQDL 793

Length = 986

>gnl\|CDD\|215505 PLN02935, PLN02935, Bifunctional NADH kinase/NAD(+) kinase	Back alignment and domain information

>gnl\|CDD\|223139 COG0061, nadF, NAD kinase [Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|216543 pfam01513, NAD_kinase, ATP-NAD kinase	Back alignment and domain information

>gnl\|CDD\|235121 PRK03372, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|179862 PRK04539, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|179257 PRK01231, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|179635 PRK03708, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|237601 PRK14076, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|179352 PRK01911, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|172567 PRK14077, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		814
PLN02727		986	NAD kinase	100.0
PF13350		164	Y_phosphatase3: Tyrosine phosphatase family; PDB:	99.92
PLN02935		508	Bifunctional NADH kinase/NAD(+) kinase	99.86
PF03162		164	Y_phosphatase2: Tyrosine phosphatase family; Inter	99.83
TIGR01244		135	conserved hypothetical protein TIGR01244. No membe	99.83
KOG2178		409	consensus Predicted sugar kinase [Carbohydrate tra	99.81
PRK14077		287	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	99.81
PRK04539		296	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	99.81
PRK03378		292	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	99.79
PRK03372		306	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	99.79
PRK02649		305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	99.79
PRK01911		292	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	99.78
PRK02155		291	ppnK NAD(+)/NADH kinase family protein; Provisiona	99.76
PRK14076		569	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	99.75
PF04273		110	DUF442: Putative phosphatase (DUF442); InterPro: I	99.73
PRK01231		295	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	99.72
PRK01185		271	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	99.7
PF01513		285	NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Me	99.68
PRK04885		265	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	99.68
PRK03501		264	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	99.67
PRK02231		272	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	99.65
PRK03708		277	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	99.65
COG3453		130	Uncharacterized protein conserved in bacteria [Fun	99.63
COG0061		281	nadF NAD kinase [Coenzyme metabolism]	99.62
PRK14075		256	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	99.6
PRK00561		259	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	99.6
PRK02645		305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	99.59
KOG1572		249	consensus Predicted protein tyrosine phosphatase [	99.49
PLN02929		301	NADH kinase	99.47
smart00195		138	DSPc Dual specificity phosphatase, catalytic domai	99.46
COG2365		249	Protein tyrosine/serine phosphatase [Signal transd	99.45
PRK04761		246	ppnK inorganic polyphosphate/ATP-NAD kinase; Revie	99.43
cd00127		139	DSPc Dual specificity phosphatases (DSP); Ser/Thr	99.42
PTZ00393		241	protein tyrosine phosphatase; Provisional	99.27
PTZ00242		166	protein tyrosine phosphatase; Provisional	99.25
PF00782		133	DSPc: Dual specificity phosphatase, catalytic doma	99.2
PF05706		168	CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3)	99.2
PRK12361		547	hypothetical protein; Provisional	99.15
TIGR00147		293	lipid kinase, YegS/Rv2252/BmrU family. The E. coli	98.72
KOG1720		225	consensus Protein tyrosine phosphatase CDC14 [Defe	98.72
PF14566		149	PTPlike_phytase: Inositol hexakisphosphate; PDB: 1	98.32
COG2453		180	CDC14 Predicted protein-tyrosine phosphatase [Sign	98.16
KOG2836		173	consensus Protein tyrosine phosphatase IVA1 [Signa	98.15
KOG4180		395	consensus Predicted kinase [General function predi	98.11
KOG1719		183	consensus Dual specificity phosphatase [Defense me	98.03
KOG1716		285	consensus Dual specificity phosphatase [Defense me	97.96
smart00404		105	PTPc_motif Protein tyrosine phosphatase, catalytic	97.85
smart00012		105	PTPc_DSPc Protein tyrosine phosphatase, catalytic	97.85
KOG1718		198	consensus Dual specificity phosphatase [Defense me	97.68
KOG1717		343	consensus Dual specificity phosphatase [Defense me	97.64
PRK13057		287	putative lipid kinase; Reviewed	97.35
PRK11914		306	diacylglycerol kinase; Reviewed	97.26
cd00047		231	PTPc Protein tyrosine phosphatases (PTP) catalyze	96.88
PRK00861		300	putative lipid kinase; Reviewed	96.87
PRK13054		300	lipid kinase; Reviewed	96.64
smart00194		258	PTPc Protein tyrosine phosphatase, catalytic domai	96.62
PLN02727		986	NAD kinase	96.57
PRK13059		295	putative lipid kinase; Reviewed	96.45
COG5599		302	PTP2 Protein tyrosine phosphatase [Signal transduc	96.42
PRK13055		334	putative lipid kinase; Reviewed	96.41
PF00781		130	DAGK_cat: Diacylglycerol kinase catalytic domain;	96.39
PRK13337		304	putative lipid kinase; Reviewed	96.23
PHA02740		298	protein tyrosine phosphatase; Provisional	95.86
KOG2283		434	consensus Clathrin coat dissociation kinase GAK/PT	95.79
smart00046		124	DAGKc Diacylglycerol kinase catalytic domain (pres	95.76
PHA02742		303	protein tyrosine phosphatase; Provisional	95.65
PRK15375		535	pathogenicity island 1 effector protein StpP; Prov	95.61
PRK12361		547	hypothetical protein; Provisional	95.6
COG1597		301	LCB5 Sphingosine kinase and enzymes related to euk	95.6
PLN02958		481	diacylglycerol kinase/D-erythro-sphingosine kinase	95.39
PHA02747		312	protein tyrosine phosphatase; Provisional	95.3
PLN02160		136	thiosulfate sulfurtransferase	95.21
TIGR03702		293	lip_kinase_YegS lipid kinase YegS. Members of this	95.13
PHA02746		323	protein tyrosine phosphatase; Provisional	94.86
PF00102		235	Y_phosphatase: Protein-tyrosine phosphatase; Inter	94.82
PHA02738		320	hypothetical protein; Provisional	94.73
COG5350		172	Predicted protein tyrosine phosphatase [General fu	94.43
cd01523		100	RHOD_Lact_B Member of the Rhodanese Homology Domai	94.34
cd01518		101	RHOD_YceA Member of the Rhodanese Homology Domain	94.02
KOG0793		1004	consensus Protein tyrosine phosphatase [Signal tra	93.99
KOG0792		1144	consensus Protein tyrosine phosphatase PTPMEG, con	93.88
cd01533		109	4RHOD_Repeat_2 Member of the Rhodanese Homology Do	93.49
COG3199		355	Predicted inorganic polyphosphate/ATP-NAD kinase [	93.47
cd01448		122	TST_Repeat_1 Thiosulfate sulfurtransferase (TST),	93.36
PLN02204		601	diacylglycerol kinase	92.72
KOG2386		393	consensus mRNA capping enzyme, guanylyltransferase	92.59
KOG0791		374	consensus Protein tyrosine phosphatase, contains f	92.02
KOG4667		269	consensus Predicted esterase [Lipid transport and	91.85
KOG0789		415	consensus Protein tyrosine phosphatase [Signal tra	91.74
cd01519		106	RHOD_HSP67B2 Member of the Rhodanese Homology Doma	91.05
cd01528		101	RHOD_2 Member of the Rhodanese Homology Domain sup	90.58
cd01534		95	4RHOD_Repeat_3 Member of the Rhodanese Homology Do	89.67
PF00365		282	PFK: Phosphofructokinase; InterPro: IPR000023 The	89.58
COG0607		110	PspE Rhodanese-related sulfurtransferase [Inorgani	89.45
PRK01415		247	hypothetical protein; Validated	89.36
KOG0790		600	consensus Protein tyrosine phosphatase Corkscrew a	89.23
COG0205		347	PfkA 6-phosphofructokinase [Carbohydrate transport	89.22
PF00581		113	Rhodanese: Rhodanese-like domain This Prosite entr	89.19
PLN02884		411	6-phosphofructokinase	88.78
cd01522		117	RHOD_1 Member of the Rhodanese Homology Domain sup	88.53
cd01449		118	TST_Repeat_2 Thiosulfate sulfurtransferase (TST),	88.51
cd01444		96	GlpE_ST GlpE sulfurtransferase (ST) and homologs a	88.0
cd01527		99	RHOD_YgaP Member of the Rhodanese Homology Domain	87.7
PRK05320		257	rhodanese superfamily protein; Provisional	87.34
PRK14071		360	6-phosphofructokinase; Provisional	86.73
PRK06186		229	hypothetical protein; Validated	86.72
KOG1530		136	consensus Rhodanese-related sulfurtransferase [Ino	86.53
PRK06895		190	putative anthranilate synthase component II; Provi	86.31
PRK05600		370	thiamine biosynthesis protein ThiF; Validated	85.64
TIGR02482		301	PFKA_ATP 6-phosphofructokinase. 6-phosphofructokin	84.7
PF13348		68	Y_phosphatase3C: Tyrosine phosphatase family C-ter	84.45
TIGR02483		324	PFK_mixed phosphofructokinase. Members of this fam	84.12
KOG4228		1087	consensus Protein tyrosine phosphatase [Signal tra	83.81
PRK06555		403	pyrophosphate--fructose-6-phosphate 1-phosphotrans	83.78
PRK07765		214	para-aminobenzoate synthase component II; Provisio	83.61
PRK10287		104	thiosulfate:cyanide sulfurtransferase; Provisional	83.32
CHL00101		190	trpG anthranilate synthase component 2	82.81
PRK00162		108	glpE thiosulfate sulfurtransferase; Validated	82.73
cd00763		317	Bacterial_PFK Phosphofructokinase, a key regulator	82.7
TIGR02981		101	phageshock_pspE phage shock operon rhodanese PspE.	82.25
TIGR00566		188	trpG_papA glutamine amidotransferase of anthranila	82.24
cd01520		128	RHOD_YbbB Member of the Rhodanese Homology Domain	81.8
PTZ00286		459	6-phospho-1-fructokinase; Provisional	81.7
cd01524		90	RHOD_Pyr_redox Member of the Rhodanese Homology Do	81.69
PRK06774		191	para-aminobenzoate synthase component II; Provisio	81.64
PRK14072		416	6-phosphofructokinase; Provisional	81.59
cd01526		122	RHOD_ThiF Member of the Rhodanese Homology Domain	81.55
cd01530		121	Cdc25 Cdc25 phosphatases are members of the Rhodan	81.52
KOG4471		717	consensus Phosphatidylinositol 3-phosphate 3-phosp	80.72
PF06602		353	Myotub-related: Myotubularin-like phosphatase doma	80.36
cd01743		184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	80.3
PRK06830		443	diphosphate--fructose-6-phosphate 1-phosphotransfe	80.26

>PLN02727 NAD kinase	Back alignment and domain information

Probab=100.00  E-value=1.5e-199  Score=1713.42  Aligned_cols=781  Identities=67%  Similarity=1.014  Sum_probs=729.9

Q ss_pred             cccCCCCccccccc---cccccCCcceEeeeeeEeeccchhhhhccceEEEEeeeccccccccCcccccccCCCCCCCCc
Q 003509            7 MQRLSSPATGILCS---SKLHNNETKLWGFGFRFKLQRRNESVRRRVKLVVSAELSKSFSLNLGLDSQVIQSNDPSQLPW   83 (814)
Q Consensus         7 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (814)
                      |.|+ +|+|||++.   ++++++++||+||||||.  +|+...||++||||+|+||++||++||||||+||+||+|||||
T Consensus         1 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (986)
T PLN02727          1 MARL-SPVTGILSSCLCSVKLNSDGKLLGFGFGFW--QRKEPLKRRLKFVVSAELSKSFSSNLGLDSQNFQSRDLSQLPW   77 (986)
T ss_pred             CCCC-CCccccccccccceeeccccceeccchhhh--hccHHHHhhhhheehhhhhhccccccCcccccccccchhcCcc
Confidence            6788 999999744   999999999999999984  3444449999999999999999999999999999999999999


Q ss_pred             cCCCCCchHHHHhhhhhHHHHHHHHHHHHHhhcCCCCCcccccccCCCCcccCcccccccchhhHHHhhccCcccccCCC
Q 003509           84 IGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGECTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLSGR  163 (814)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~e~~~~~d~~~~~~~~led~i~~~~~~~~~~ln~gr~~~~~~~  163 (814)
                      |||||||||||||||||||+|||||+|||++||||+||||.|+|||+.+++|.|||||+++||||+++||+||.||++||
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r  157 (986)
T PLN02727         78 IGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGECPVSYDFTSEEKPLLEDKIVSVLGCMLSLLNKGREEVLSGR  157 (986)
T ss_pred             ccCCCccHHHHhhhhhHHHHHHHHHHHHHHHhcCcccccccccccCCccccchhhhhHHHHHHHHHHHHhcchhhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccccccccCCCcccchhhHhhhhhHHHHHHHhccCccCccchhHHHHHHHhhhhcccCCCCCCCCCCCCc
Q 003509          164 SSIMNAYRVADISMTEDQLPPLAIFRSEMKRCCESMHIALENYLTPEDVRSLDVWRKLQRLKNVCYDSGFPRGDDYPIHT  243 (814)
Q Consensus       164 ~~~~~nf~~~~~~~~~~~~p~l~l~r~~l~~~~~~l~~~l~~yl~p~~~~~~~~~rkLqr~~~~~~d~g~pR~~g~p~~t  243 (814)
                      +++|++|+++|++.|||++||||+||.+||+|||+||++|++||+|+++|||+||||||||+|+|||.||||.+||||++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~ce~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~pr~~~~p~~~  237 (986)
T PLN02727        158 SSIMSSFRGSEVSAMEDKLPPLAIFRGEMKRCCESLHVALENYLTPDDDRSLDVWRKLQRLKNVCYDAGFPRSDDYPCHT  237 (986)
T ss_pred             hhhhhhcccchhhhhhccCChHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHhhhhhcCCCCCCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccceeecCCccccccCCCcceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEee
Q 003509          244 LFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIP  323 (814)
Q Consensus       244 ~i~Nfr~V~~~~~~d~~~~~~~e~~LYRSGqpT~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIP  323 (814)
                      .|+||.+|+++++++|+.+++.+..+|||+||+++++++|++.|||||||||++.++..++...++++++..|++|+|+|
T Consensus       238 ~~~n~~~v~~~~~~~~~~~~~~~~~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIP  317 (986)
T PLN02727        238 LFANWNPVYLSTSKEDIDSKESEAAFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIP  317 (986)
T ss_pred             cccccceeeecccccccccccceeeEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEee
Confidence            99999999999999999999999999999999999999999999999999999973345555567888999999999999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHhC-CCCHHHHHHHHhhhccccccchHHHHHHhh
Q 003509          324 VEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYM-ARCASQISGQTITSNDVLLKDSTRTRKLKA  402 (814)
Q Consensus       324 V~d~~~ps~e~v~~fleiL~d~~~~PVLVHCtAGKDRTGal~aLLl~l~-GV~~edIiaDYlLSn~~l~~~~~~~~a~~m  402 (814)
                      |.....|+.+++++|++++.+..++|||+||++|+||||+|+++|+.++ +.....+..     +             ..
T Consensus       318 Vs~~~apt~EqVe~fa~~l~~slpkPVLvHCKSGarRAGamvA~yl~~~~~~~~~~~~~-----~-------------~~  379 (986)
T PLN02727        318 VEVRTAPSAEQVEKFASLVSDSSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSAERLLGQ-----N-------------SV  379 (986)
T ss_pred             cCCCCCCCHHHHHHHHHHHHhhcCCCEEEECCCCCchHHHHHHHHHHHHcccchhhhcc-----c-------------cc
Confidence            9888899999999999999667799999999999999999999999864 333222211     1             11


Q ss_pred             hhhhhhhhhccccHHHHHHHhhcccccccccccccccccCCCCCcccc-ccccccccchhhhhcccCCcccccccccCCc
Q 003509          403 SAGKFLLEEKYETVKENQDEIQTKNGVFGFGLSVDMDKRNQSNGAYKG-LSSVEGVESAKEVDTAVGSLGTTFSKETDPF  481 (814)
Q Consensus       403 ~~~l~~l~~~~g~~ee~l~~l~~~~d~~le~ar~nl~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (814)
                      +.....+.++++.+++.++...+.+..+.+.+.+..+.++++++++|| +.++|+|...+++. +++++++||++|+|||
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  458 (986)
T PLN02727        380 VNGNGKLDQETGSLQETNDKDSSSNGSESGESCSIKDETGRSNLEAYNSLPSDQSTQQGEMVG-TGVESQSNFNMESDPL  458 (986)
T ss_pred             cccCcccccccCccccccccccccCcccccccccccccccccccccccccccccccccccccc-ccccccceeeeecCcc
Confidence            222345668899999999999999999999999999999999999999 99999999999998 8889999999999999


Q ss_pred             cccCCCCcccchhHhhhhhhcccCCCCccccccccccccCC----------ccccCCCCccccccccccccccCCCCCCC
Q 003509          482 KAQVPPSNFVSKKEMSRFFRSKTTSPPRYFNYQSKRMDVLP----------SEIVSSGPVSGVAETRYSQWSLSGNNLSP  551 (814)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (814)
                      |||+||||||||||||||||||||+|++|+|||+|+|++||          ++|++.+++.|++|+++||++++++++++
T Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~sng~~s~kn~s~  538 (986)
T PLN02727        459 KAQVPPCDVFSKKEMSKFFRSKKIYPPTYLNYRRKGFEKLPVPQFTGVTQGSKIDDTDSISRLVETGRSNGLVSEKNSSP  538 (986)
T ss_pred             cccCCCcccccHHHHHHHHhhcccCCcccccchhcccccCCccccccccchhhccCccchhhhhhccCCCccccccccCc
Confidence            99999999999999999999999999999999999999998          77999999999999999999999999999


Q ss_pred             CCCCCCCCCCcccCCCCccccCCcccccccCCCcccccccccccccccccccccccccccccccCCCCCCCCCCCCc-cc
Q 003509          552 NHQNLPAGSEKSSDNNGYVSAGCSTNGFDRGDRSSMTEANLLTSVTKNLDEQVISSSVRDVQRSNGKPSNSGDDDLG-PI  630 (814)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  630 (814)
                      +.|++.+.+.|.+||+.++|+|++++.++.+++.++++.+.+++|+++++.++++++.++++.+||+++++++||++ +|
T Consensus       539 d~qss~~~~~k~sNGss~~s~~s~s~~Ss~~~~~~~~ng~~stsv~~nl~~~v~s~s~res~s~Ng~a~vgssd~~~~~~  618 (986)
T PLN02727        539 KYQSSEFDNGKSSNGSSFASDGSLSVASSITNGNPSNNGASSSTVSDNLERSVASVSVRESQRSNGKASLGSSDDELGAI  618 (986)
T ss_pred             cccchhhccccCCCCccccccCcccccccccCCccccCCCccccccCCCcccccccccccccccCCccccccccCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             cCCcccccccceeecccccccceeeeecCcccceeeecCCcccccCCchhHHhhcccccCCEEEEEecCCchHHHHHHHH
Q 003509          631 VGNMCASSTGVVRVQSRKKAEMFLVRTDGFSCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEV  710 (814)
Q Consensus       631 ~g~~c~s~~~~~~~~~~~~~~~~l~r~d~~sc~r~~~~~s~~~~~~ps~~~~~l~w~~~~kkVlIV~K~~~ea~~~a~eL  710 (814)
                      |||||||+|||||||+|||++||++||||+||+||.+++|+++|+|||+||++|+|.++|++|+||+|+++++.+.+.+|
T Consensus       619 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~c~~~~~~~~~~~~~~~s~~~~~l~W~~p~rtVgIV~K~~~ea~~~~~eL  698 (986)
T PLN02727        619 EGNMCASATGVVRVQSRRKAEMFLVRTDGFSCTREKVTESSLAFTHPSTQQQMLMWKSTPKTVLLLKKLGQELMEEAKEV  698 (986)
T ss_pred             cccccccccccEEeeccCCcceEEEEecCcceeehhhccccccccCcchhceeeecCCCCCEEEEEcCCcHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             HHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHHHHHhhhcCCCCcEEEEeCCCc
Q 003509          711 ASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSL  790 (814)
Q Consensus       711 i~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTILrAArlf~~s~~PILGINlGrL  790 (814)
                      ++||.+++|++|+++++.++.+...+.+....+++..+..++.+.+|+|||||||||||+|+|++....+||||||+|+|
T Consensus       699 ~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIvLGGDGTlLrAar~~~~~~iPILGINlGrL  778 (986)
T PLN02727        699 ASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVVSFNLGSL  778 (986)
T ss_pred             HHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence            99999844999999999887664333333333444444456667899999999999999999999999999999999999


Q ss_pred             ccCCCCCcccHHHHHhhhh
Q 003509          791 GFLTSHPVSSYLNSLCFLS  809 (814)
Q Consensus       791 GFLTe~~~dei~eaLe~L~  809 (814)
                      ||||++++++++++|++|+
T Consensus       779 GFLTdi~~ee~~~~L~~Il  797 (986)
T PLN02727        779 GFLTSHYFEDFRQDLRQVI  797 (986)
T ss_pred             cccccCCHHHHHHHHHHHH
Confidence            9999999999999999986

>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B	Back alignment and domain information

>PLN02935 Bifunctional NADH kinase/NAD(+) kinase	Back alignment and domain information

>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity	Back alignment and domain information

>TIGR01244 conserved hypothetical protein TIGR01244	Back alignment and domain information

>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional	Back alignment and domain information

>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function	Back alignment and domain information

>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2	Back alignment and domain information

>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>COG0061 nadF NAD kinase [Coenzyme metabolism]	Back alignment and domain information

>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]	Back alignment and domain information

>PLN02929 NADH kinase	Back alignment and domain information

>smart00195 DSPc Dual specificity phosphatase, catalytic domain	Back alignment and domain information

>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]	Back alignment and domain information

>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed	Back alignment and domain information

>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases	Back alignment and domain information

>PTZ00393 protein tyrosine phosphatase; Provisional	Back alignment and domain information

>PTZ00242 protein tyrosine phosphatase; Provisional	Back alignment and domain information

>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity	Back alignment and domain information

>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species	Back alignment and domain information

>PRK12361 hypothetical protein; Provisional	Back alignment and domain information

>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family	Back alignment and domain information

>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]	Back alignment and domain information

>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B	Back alignment and domain information

>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]	Back alignment and domain information

>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG4180 consensus Predicted kinase [General function prediction only]	Back alignment and domain information

>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]	Back alignment and domain information

>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]	Back alignment and domain information

>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif	Back alignment and domain information

>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity	Back alignment and domain information

>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]	Back alignment and domain information

>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]	Back alignment and domain information

>PRK13057 putative lipid kinase; Reviewed	Back alignment and domain information

>PRK11914 diacylglycerol kinase; Reviewed	Back alignment and domain information

>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways	Back alignment and domain information

>PRK00861 putative lipid kinase; Reviewed	Back alignment and domain information

>PRK13054 lipid kinase; Reviewed	Back alignment and domain information

>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain	Back alignment and domain information

>PLN02727 NAD kinase	Back alignment and domain information

>PRK13059 putative lipid kinase; Reviewed	Back alignment and domain information

>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]	Back alignment and domain information

>PRK13055 putative lipid kinase; Reviewed	Back alignment and domain information

>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]	Back alignment and domain information

>PRK13337 putative lipid kinase; Reviewed	Back alignment and domain information

>PHA02740 protein tyrosine phosphatase; Provisional	Back alignment and domain information

>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed)	Back alignment and domain information

>PHA02742 protein tyrosine phosphatase; Provisional	Back alignment and domain information

>PRK15375 pathogenicity island 1 effector protein StpP; Provisional	Back alignment and domain information

>PRK12361 hypothetical protein; Provisional	Back alignment and domain information

>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	Back alignment and domain information

>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase	Back alignment and domain information

>PHA02747 protein tyrosine phosphatase; Provisional	Back alignment and domain information

>PLN02160 thiosulfate sulfurtransferase	Back alignment and domain information

>TIGR03702 lip_kinase_YegS lipid kinase YegS	Back alignment and domain information

>PHA02746 protein tyrosine phosphatase; Provisional	Back alignment and domain information

>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity	Back alignment and domain information

>PHA02738 hypothetical protein; Provisional	Back alignment and domain information

>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]	Back alignment and domain information

>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily	Back alignment and domain information

>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily	Back alignment and domain information

>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]	Back alignment and domain information

>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2	Back alignment and domain information

>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]	Back alignment and domain information

>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain	Back alignment and domain information

>PLN02204 diacylglycerol kinase	Back alignment and domain information

>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]	Back alignment and domain information

>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]	Back alignment and domain information

>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]	Back alignment and domain information

>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]	Back alignment and domain information

>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily	Back alignment and domain information

>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2	Back alignment and domain information

>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3	Back alignment and domain information

>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []	Back alignment and domain information

>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK01415 hypothetical protein; Validated	Back alignment and domain information

>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]	Back alignment and domain information

>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family	Back alignment and domain information

>PLN02884 6-phosphofructokinase	Back alignment and domain information

>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1	Back alignment and domain information

>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain	Back alignment and domain information

>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily	Back alignment and domain information

>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily	Back alignment and domain information

>PRK05320 rhodanese superfamily protein; Provisional	Back alignment and domain information

>PRK14071 6-phosphofructokinase; Provisional	Back alignment and domain information

>PRK06186 hypothetical protein; Validated	Back alignment and domain information

>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK06895 putative anthranilate synthase component II; Provisional	Back alignment and domain information

>PRK05600 thiamine biosynthesis protein ThiF; Validated	Back alignment and domain information

>TIGR02482 PFKA_ATP 6-phosphofructokinase	Back alignment and domain information

>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B	Back alignment and domain information

>TIGR02483 PFK_mixed phosphofructokinase	Back alignment and domain information

>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]	Back alignment and domain information

>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated	Back alignment and domain information

>PRK07765 para-aminobenzoate synthase component II; Provisional	Back alignment and domain information

>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional	Back alignment and domain information

>CHL00101 trpG anthranilate synthase component 2	Back alignment and domain information

>PRK00162 glpE thiosulfate sulfurtransferase; Validated	Back alignment and domain information

>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate	Back alignment and domain information

>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE	Back alignment and domain information

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase	Back alignment and domain information

>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily	Back alignment and domain information

>PTZ00286 6-phospho-1-fructokinase; Provisional	Back alignment and domain information

>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily	Back alignment and domain information

>PRK06774 para-aminobenzoate synthase component II; Provisional	Back alignment and domain information

>PRK14072 6-phosphofructokinase; Provisional	Back alignment and domain information

>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily	Back alignment and domain information

>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily	Back alignment and domain information

>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO	Back alignment and domain information

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase	Back alignment and domain information

>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		814
3pfn_A		365	Crystal Structure Of Human Nad Kinase Length = 365		1e-17
3afo_A		388	Crystal Structure Of Yeast Nadh Kinase Complexed Wi		2e-11

>pdb|3PFN|A Chain A, Crystal Structure Of Human Nad Kinase Length = 365

Back alignment and structure

Iteration: 1

Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/119 (42%), Positives = 76/119 (63%), Gaps = 7/119 (5%) Query: 682 QMLMWKTTPRTVLVLKKPGPA-LMEEAKEVASFLYHQEKMNILVEPDVHD--IFARIPGF 738 Q L W +P++VLV+KK A L++ KE+ + L +E + VE V + A F Sbjct: 30 QRLTWNKSPKSVLVIKKXRDASLLQPFKELCTHLX-EENXIVYVEKKVLEDPAIASDESF 88 Query: 739 GFVQTFYL---QDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLT 794 G V+ + +D D+ ++DF+ CLGGDG +L+AS+LF+G+VPPV +F+LGSLGFLT Sbjct: 89 GAVKKKFCTFREDYDDISNQIDFIICLGGDGTLLYASSLFQGSVPPVXAFHLGSLGFLT 147

PyMOL of 3pfn

>pdb|3AFO|A Chain A, Crystal Structure Of Yeast Nadh Kinase Complexed With Nadh Length = 388

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		814
3afo_A		388	NADH kinase POS5; alpha/beta+BETA sandwich, ATP-bi	4e-34
3pfn_A		365	NAD kinase; structural genomics consortium, SNP, S	2e-32
3gxh_A		157	Putative phosphatase (DUF442); YP_001181608.1, str	2e-14
2an1_A		292	Putative kinase; structural genomics, PSI, protein	1e-11
1u0t_A		307	Inorganic polyphosphate/ATP-NAD kinase; alpha-beta	4e-11
2f46_A		156	Hypothetical protein; structural genomics, joint c	5e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1z0s_A		278	Probable inorganic polyphosphate/ATP-NAD kinase; A	5e-09
1xri_A		151	AT1G05000; structural genomics, protein structure	7e-09
1yt5_A		258	Inorganic polyphosphate/ATP-NAD kinase; domain 1:	2e-08
2i2c_A		272	Probable inorganic polyphosphate/ATP-NAD kinase 1;	5e-06

>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae} Length = 388	Back alignment and structure

 Score =  134 bits (338), Expect = 4e-34
 Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 9/154 (5%)

Query: 661 SCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPG-PALMEEAKEVASFLYHQEK 719
             N  + + S+   + P+++ Q L+W+   + V + KKP  P+  E   E  + L+    
Sbjct: 12  PVNNLRSSSSADFVSPPNSKLQSLIWQNPLQNVYITKKPWTPSTREAMVEFITHLHESYP 71

Query: 720 -MNILVEPDVHDIFARIPGF------GFVQTFYLQDTSDLHERVDFVACLGGDGVILHAS 772
            +N++V+PDV +  ++                Y     D+  R D +  LGGDG ILH  
Sbjct: 72  EVNVIVQPDVAEEISQDFKSPLENDPNRPHILYTGPEQDIVNRTDLLVTLGGDGTILHGV 131

Query: 773 NLFRG-AVPPVISFNLGSLGFLTSHPVSSYLNSL 805
           ++F    VPPV++F LG+LGFL+      +    
Sbjct: 132 SMFGNTQVPPVLAFALGTLGFLSPFDFKEHKKVF 165

PyMOL of 3afo

>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens} Length = 365	Back alignment and structure

>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* Length = 157	Back alignment and structure

>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium} Length = 292	Back alignment and structure

>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A Length = 307	Back alignment and structure

>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491} Length = 156	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A* Length = 278	Back alignment and structure

>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A Length = 151	Back alignment and structure

>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} Length = 258	Back alignment and structure

>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A* Length = 272	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		814
d1u0ta_		302	e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kina	3e-13
d1xria_		151	c.45.1.1 (A:) Putative phosphatase At1g05000 {Thal	1e-09
d1z0sa1		249	e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD	2e-07

>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]} Length = 302	Back information, alignment and structure


class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: NAD kinase-like
domain: Inorganic polyphosphate/ATP-NAD kinase PpnK
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 69.3 bits (168), Expect = 3e-13
 Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 6/121 (4%)

Query: 691 RTVLVLKKPG-PALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQ-- 747
           R+VL++   G     E A+ V   L   +    ++  +  D  +       ++   ++  
Sbjct: 1   RSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIE 60

Query: 748 ---DTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNS 804
                    +  + V  LGGDG  L A+ L R A  PV+  NLG +GFL      +    
Sbjct: 61  VVDADQHAADGCELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAV 120

Query: 805 L 805
           L
Sbjct: 121 L 121

PyMOL of d1u0ta_

>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 151	Back information, alignment and structure

>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]} Length = 249	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		814
d1ywfa1		272	Phosphotyrosine protein phosphatase PtpB {Mycobact	99.96
d1xria_		151	Putative phosphatase At1g05000 {Thale cress (Arabi	99.92
d1u0ta_		302	Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycob	99.84
d1z0sa1		249	Inorganic polyphosphate/ATP-NAD kinase PpnK {Archa	99.68
d1ohea2		182	Proline directed phosphatase CDC14b2 {Human (Homo	99.54
d1vhra_		178	VH1-related dual-specificity phosphatase, VHR {Hum	99.46
d1fpza_		176	Kinase associated phosphatase (kap) {Human (Homo s	99.45
d1rxda_		152	Protein tyrosine phosphatase type IVa {Human (Homo	99.37
d1mkpa_		144	Mapk phosphatase {Human (Homo sapiens), pyst1 (mkp	99.22
d1m3ga_		145	Mapk phosphatase {Human (Homo sapiens), pac-1 [Tax	99.19
d1i9sa_		194	mRNA capping enzyme, triphosphatase domain {Mouse	99.12
d2pt0a1		313	Myo-inositol hexaphosphate phosphohydrolase (phyta	98.98
d1d5ra2		174	Phoshphoinositide phosphatase Pten (Pten tumor sup	98.62
d1wcha_		308	Tyrosine-protein phosphatase, non-receptor type 13	97.51
d2qv7a1		312	Diacylglycerol kinase DgkB {Staphylococcus aureus	97.49
d1g4us2		243	SptP tyrosine phosphatase, catalytic domain {Salmo	97.45
d1fpra_		284	Tyrosine phosphatase {Human (Homo sapiens), shp-1	97.35
d2shpa1		307	Tyrosine phosphatase {Human (Homo sapiens), shp-2	97.35
d1lyva_		283	Protein-tyrosine phosphatase YopH, catalytic domai	97.23
d1lara1		317	RPTP Lar {Human (Homo sapiens) [TaxId: 9606]}	97.16
d1jlna_		297	Tyrosine phosphatase {Mouse (Mus musculus), ptp-sl	97.16
d2f71a1		297	Tyrosine phosphatase {Human (Homo sapiens), 1B [Ta	97.1
d1rpma_		278	Tyrosine phosphatase {Human (Homo sapiens), mu [Ta	96.9
d1l8ka_		273	Tyrosine phosphatase {Human (Homo sapiens), T-cell	96.86
d1yfoa_		288	Tyrosine phosphatase {Mouse (Mus musculus) [TaxId:	96.8
d2bona1		295	Lipid kinase YegS {Escherichia coli [TaxId: 562]}	96.63
d1lara2		249	RPTP Lar {Human (Homo sapiens) [TaxId: 9606]}	96.62
d1pfka_		320	ATP-dependent phosphofructokinase {Escherichia col	96.31
d4pfka_		319	ATP-dependent phosphofructokinase {Bacillus stearo	96.19
d1p15a_		245	Protein-tyrosine phosphatase alpha {Mouse (Mus mus	95.88
d1vlja_		398	NADH-dependent butanol dehydrogenase A (TM0820) {T	90.64
d1tq1a_		119	Thiosulfate sulfurtransferase/Senescence-associate	90.38
d1s1ma1		258	CTP synthase PyrG, C-terminal domain {Escherichia	90.24
d1urha2		120	3-mercaptopyruvate sulfurtransferase {Escherichia	88.99
d1vcoa1		250	CTP synthase PyrG, C-terminal domain {Thermus ther	88.83
d1zsqa2		387	Myotubularin-related protein 2, C-terminal domain	88.22
d1yt8a4		130	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	85.42
d1o2da_		359	Alcohol dehydrogenase TM0920 {Thermotoga maritima	85.19
d1qxna_		137	Polysulfide-sulfur transferase (sulfide dehydrogen	83.78
d1yt8a1		136	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	83.27
d1rrma_		385	Lactaldehyde reductase FucO {Escherichia coli [Tax	81.15
d2f48a1		550	Pyrophosphate-dependent phosphofructokinase {Lyme	80.65

>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Mycobacterial PtpB-like
domain: Phosphotyrosine protein phosphatase PtpB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.96  E-value=1.7e-29  Score=212.07  Aligned_cols=183  Identities=14%  Similarity=0.127  Sum_probs=136.3

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCEEEECCCC---CHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf             567883110105886655567975409985999---97429999975982999869883247520566587552199399
Q 003509          243 TLFANWSPVYLSNSKDDIASKDSEVTFCRGGQV---TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVEL  319 (814)
Q Consensus       243 t~i~Nfr~V~~~~~~d~~~~~~~e~~LYRSGqi---T~edla~Lk~lGIKTVIDLRse~~E~~~~p~~e~~~~~~~GI~y  319 (814)
                      ..+.|||++++.++      ..++++||||+++   |++|++.|.++||+||||||+.. |....+.    .....|+++
T Consensus         4 ~G~~NfRDlGG~~t------~vr~g~l~RS~~l~~lt~~d~~~L~~lgI~tViDLRs~~-E~~~~~~----~~~~~~~~~   72 (272)
T d1ywfa1           4 PGAWNFRDVADTAT------ALRPGRLFRSSELSRLDDAGRATLRRLGITDVADLRSSR-EVARRGP----GRVPDGIDV   72 (272)
T ss_dssp             TTCCSCEEGGGTCT------TSCTTSEEEESCCTTCCHHHHHHHHHHTCCEEEECCCHH-HHHHHCS----CCCCTTCEE
T ss_pred             CCCCCCCCCCCCCC------CCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEEECCCHH-HHHHCCC----CCCCCCCEE
T ss_conf             99987634789864------504870685689675999999999977996898788878-8853389----878877637


Q ss_pred             EEEECCCCCCCC--------------------------------H-------HH-------------HHHHHHHHHCCCC
Q ss_conf             996268999999--------------------------------9-------99-------------9999999854999
Q 003509          320 IKIPVEVRTAPT--------------------------------M-------EQ-------------VEKFASLVSNSSK  347 (814)
Q Consensus       320 IhIPV~d~~~Ps--------------------------------~-------e~-------------i~~fl~il~d~~~  347 (814)
                      +++|+.......                                .       +.             +..++.++  ..+
T Consensus        73 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~Y~~~~~~~~~~~~~~~~~~~~--~~~  150 (272)
T d1ywfa1          73 HLLPFPDLADDDADDSAPHETAFKRLLTNDGSNGESGESSQSINDAATRYMTDEYRQFPTRNGAQRALHRVVTLL--AAG  150 (272)
T ss_dssp             EECCCCCSCC-------------------------------CCCHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHH--HTT
T ss_pred             EEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--CCC
T ss_conf             871476423333232212468999886410221101345555566899999999999874306799999999974--259


Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHH-------------------------------
Q ss_conf             9598808469984999999999967999999999885402122456389-------------------------------
Q 003509          348 KPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSNDVLLKDSTR-------------------------------  396 (814)
Q Consensus       348 ~PVLVHCtAGKDRTGalvaLlrll~Gvd~eeIi~Dyllsn~~l~~~~~~-------------------------------  396 (814)
                      +|+||||++||||||+++++++.++||+.++|++||++||.++....+.                               
T Consensus       151 ~pvL~HCtaGKDRTG~~aallL~llGV~~e~I~~DYllSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (272)
T d1ywfa1         151 RPVLTHCFAGKDRTGFVVALVLEAVGLDRDVIVADYLRSNDSVPQLRARISEMIQQRFDTELAPEVVTFTKARLSDGVLG  230 (272)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHHHTTCCHHHHHHHHHGGGGGHHHHHHHHHHHHHTTTTSCCCHHHHHHHHTTTCHHHHS
T ss_pred             CCEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             97798527888306899999999839999999999986444069999999999986034211303443345665544417


Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             8998622234454210120999999762155210000001101
Q 003509          397 TRKLKASAGKFLLEEKYETVKENQDEIQTKNGVFGFGLSVDMD  439 (814)
Q Consensus       397 ~~a~~m~~~l~~l~~~~g~~ee~l~~l~s~~d~~le~ar~nl~  439 (814)
                      ..++.|.+++..++++||+++.|++. +|++++.++.+|..++
T Consensus       231 ~~~~~l~~~l~~i~~~yGs~~~YL~~-~Gl~~~~i~~Lr~~lL  272 (272)
T d1ywfa1         231 VRAEYLAAARQTIDETYGSLGGYLRD-AGISQATVNRMRGVLL  272 (272)
T ss_dssp             CCHHHHHHHHHHHHHHHSSHHHHHHH-TTCCHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHCCHHHHHHH-CCCCHHHHHHHHHHCC
T ss_conf             78999999999999960999999988-6999999999999609

PyMOL of d1ywfa1

>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1ohea2 c.45.1.1 (A:199-380) Proline directed phosphatase CDC14b2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vhra_ c.45.1.1 (A:) VH1-related dual-specificity phosphatase, VHR {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rxda_ c.45.1.1 (A:) Protein tyrosine phosphatase type IVa {Human (Homo sapiens), pr-1 [TaxId: 9606]}	Back information, alignment and structure

>d1mkpa_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pyst1 (mkp3) [TaxId: 9606]}	Back information, alignment and structure

>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1 [TaxId: 9606]}	Back information, alignment and structure

>d1i9sa_ c.45.1.1 (A:) mRNA capping enzyme, triphosphatase domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2pt0a1 c.45.1.4 (A:34-346) Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA {Selenomonas ruminantium [TaxId: 971]}	Back information, alignment and structure

>d1d5ra2 c.45.1.1 (A:14-187) Phoshphoinositide phosphatase Pten (Pten tumor suppressor), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wcha_ c.45.1.2 (A:) Tyrosine-protein phosphatase, non-receptor type 13 (PTPL1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1g4us2 c.45.1.2 (S:297-539) SptP tyrosine phosphatase, catalytic domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1fpra_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens), shp-1 [TaxId: 9606]}	Back information, alignment and structure

>d2shpa1 c.45.1.2 (A:219-525) Tyrosine phosphatase {Human (Homo sapiens), shp-2 [TaxId: 9606]}	Back information, alignment and structure

>d1lyva_ c.45.1.2 (A:) Protein-tyrosine phosphatase YopH, catalytic domain {Yersinia enterocolitica [TaxId: 630]}	Back information, alignment and structure

>d1lara1 c.45.1.2 (A:1307-1623) RPTP Lar {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jlna_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus), ptp-sl/br7 [TaxId: 10090]}	Back information, alignment and structure

>d2f71a1 c.45.1.2 (A:2-298) Tyrosine phosphatase {Human (Homo sapiens), 1B [TaxId: 9606]}	Back information, alignment and structure

>d1rpma_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens), mu [TaxId: 9606]}	Back information, alignment and structure

>d1l8ka_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens), T-cell [TaxId: 9606]}	Back information, alignment and structure

>d1yfoa_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1lara2 c.45.1.2 (A:1628-1876) RPTP Lar {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1p15a_ c.45.1.2 (A:) Protein-tyrosine phosphatase alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]}	Back information, alignment and structure

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent phosphofructokinase {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}	Back information, alignment and structure