Citrus Sinensis ID: 003517

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810---
Protein Sequence
MATQQHPPPGACPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIYKPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVDRGLGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASKNQESITLEERLVESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQQYNPTLNLHPLVEEEESDDANEVPDTPMGERAQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHccccccccEEEEEEEEccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEcccccHHHHHHHHHHHccccEEEEccccccccccccccccccHHHHHHHHHccccccEEEEEEcccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHccccccccEEEEEEEEccHHHHHHHHHccccccEEEEccccccccccccccccccccccHHHHHHHcccccccccEEEEEEcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHEEEHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHEHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccHcccccccccccccccEEEEEEEccccccHHHHHHHHHHcccccccEEEEEEEEEEcccccccEEEEcccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEccHHHHHHHHHHHHHHccEEEEEEEccccccccccEccccHHHHHHHHHHHHccccEEEEEEEcccccccccccccccEEEEEEEEccccHHHHHHHHHHHHHccccEEEEEEEEccccccccccccccHHHcccccccHHHHHHcHHHHHHHHHHHccccccEEEEEEEEccHHHHHHHHHHcccccEEEEEcccccccccccccHHHcHcccccHHHHccccccccEEEEEEEEcccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
matqqhpppgacpapmkatsngsfqgenpldyalPLIILQICLVVAFTRFLAFLlkplrqprvIAEIIGGvllgpsalgrserflntvfpkksMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVlkganqapLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRPVLSlmarrspegepvkELYVCITLSMVLAASFVTDTIGIHALFGAFVVGiimpkegpfaGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSckvplreslalgfiMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIykparkgvpykhrtiqrkdteTEFRILACFhstrnipsLINLVEssrgrkrgKLCLYAMHLMELSERSSAIAMVQKARnnglpfwdkkrddrDYIVIAFEAYQQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNrralqhapcsvgifvdrglggtTQVVASEVSYSVVvpffgglddCEALAYGMrmaehpgikltvvkfvapkgtsltfgsdapgvisidllrgdndqvgddaIISDFKSIASKNQESITLEERLVESSQEIAGVLKSMNKCNlflvgrmaptaplmdtksaeycselgpvgcflassefstTASVVVLQQynptlnlhplveeeesddanevpdtpmgeraq
Flexible Loop (DISEMBL)
matqqhpppgaCPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVllgpsalgrSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRPVLSlmarrspegepVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIykparkgvpykhrtiqrkdtetEFRILAcfhstrnipslinlvessrgrkRGKLCLYAMHLMELSERSSAIAMVQKARnnglpfwdkkrDDRDYIVIAFEAyqqlssvtVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVDRGLGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGtsltfgsdapgVISIDLLRGDNDQVGDDAIISDFKSIASKNQESITLEERLVESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQQYNPTLNLHplveeeesddanevpdtpmgeraq
Low Complexity Region (SEG)
MATQQHPPPGACPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIgllfflflvglelDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMsaaavndvaawvllalaialssssssliavwvllsGaafvvfavfvIRPVLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIYKPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVDRGLGGTTQvvasevsysvvvPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASKNQESITLEERLVESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQQYNPTLNLHPLVEEEESDDANEVPDTPMGERAQ
Disordered region (IsUnstruct)
****************************PLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRPVLSLMARR***GEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIYKPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINL***********LCLYAMHLMELS***SAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVDRGLGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKS********************EIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQQYNPTLNLH************************
Disordered Region (DISOPRED)
******P***ACPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIYKPA*********************ILACFHSTRNIPSLINLVES*****RGKLCLYAMHLMELSERSSA***********************YIVIAFEAYQQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQ***********TFHLVNRRALQHAPCSVGIFVDRGLG**********SYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVA**************************QVGDDAIISDFKSIASKNQESITLEERLVESSQEIAGVLKSMNKCNLFLVG******************ELGPVGCFLASSEFSTTASVVVLQQYN******************************
Disordered Region (DISEMBL)
************PAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIYKPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVDRGLGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASKNQESITLEERLVESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQQYNPTLNLHPLVE********************
Disordered Region (DISPRO)
*******PPGACPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIYKPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKA***********RDDRDYIVIAFEAYQQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVDRGLGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPK**************S**LLRGDNDQVGDDAIISDFKSIASKNQESITLEERLVESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQQYNP*****************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATQQHPPPGACPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIYKPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVDRGLGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASKNQESITLEERLVESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQQYNPTLNLHPLVEEEESDDANEVPDTPMGERAQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	813	2.2.26 [Sep-21-2011]
Q9LUN4	800	Cation/H(+) antiporter 19	yes	no	0.961	0.977	0.720	0.0
Q9FFR9	810	Cation/H(+) antiporter 18	no	no	0.952	0.955	0.630	0.0
Q9SUQ7	820	Cation/H(+) antiporter 17	no	no	0.939	0.931	0.605	0.0
Q1HDT3	811	Cation/H(+) antiporter 16	no	no	0.927	0.929	0.543	0.0
Q9SIT5	821	Cation/H(+) antiporter 15	no	no	0.975	0.965	0.483	0.0
Q9M353	842	Cation/H(+) antiporter 20	no	no	0.933	0.901	0.530	0.0
Q8VYD4	867	Cation/H(+) antiporter 23	no	no	0.911	0.854	0.346	1e-122
Q9SKA9	832	Cation/H(+) antiporter 21	no	no	0.902	0.882	0.336	1e-112
Q9LMJ1	829	Cation/H(+) antiporter 14	no	no	0.938	0.920	0.315	1e-107
O22920	831	Cation/H(+) symporter 13	no	no	0.929	0.909	0.304	1e-96

>sp|Q9LUN4|CHX19_ARATH Cation/H(+) antiporter 19 OS=Arabidopsis thaliana GN=CHX19 PE=2 SV=1

 Score = 1120 bits (2897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/794 (72%), Positives = 658/794 (82%), Gaps = 12/794 (1%)

Query: 10  GACPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIG 69
           G CP PMKATSNG+FQ E+PLD+ALPLIILQI LVV FTR LA+ LKPL+QPRVIAEIIG
Sbjct: 8   GQCPGPMKATSNGAFQNESPLDFALPLIILQIVLVVVFTRLLAYFLKPLKQPRVIAEIIG 67

Query: 70  GVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSL 129
           G+LLGPSALGRS+ +L+T+FPKKS+TVL+TLANIGLLFFLFLVGLELD  +I +TGKKSL
Sbjct: 68  GILLGPSALGRSKAYLDTIFPKKSLTVLDTLANIGLLFFLFLVGLELDFAAIKKTGKKSL 127

Query: 130 GIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLL 189
            IA+AGI+LPF +G+GTSFVL +T+ KG +Q P +VFMGV+LSITAFPVLARILAELKLL
Sbjct: 128 LIAIAGISLPFIVGVGTSFVLSATISKGVDQLPFIVFMGVALSITAFPVLARILAELKLL 187

Query: 190 TTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSS-LIAVWVLLSGAAFVVFAVFVIRPV 248
           TTD+GR+AMSAA VNDVAAW+LLALAIALS   +S L++VWVLL G  FV+FAV  I+P+
Sbjct: 188 TTDIGRMAMSAAGVNDVAAWILLALAIALSGDGTSPLVSVWVLLCGTGFVIFAVVAIKPL 247

Query: 249 LSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGV 308
           L+ MARR PEGEPVKELYVC+TL++VLAASFVTDTIGIHALFGAFVVGI+ PKEGPF  +
Sbjct: 248 LAYMARRCPEGEPVKELYVCVTLTVVLAASFVTDTIGIHALFGAFVVGIVAPKEGPFCRI 307

Query: 309 LIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWS 368
           L EKIED+VSGL LPLYFAASGLKT+V TIRGA SWGLL+LVIL  CFGKIVGTV  +  
Sbjct: 308 LTEKIEDLVSGLLLPLYFAASGLKTDVTTIRGAQSWGLLVLVILTTCFGKIVGTVGSSML 367

Query: 369 CKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMA 428
           CKVP RE++ LGF+MNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPI+M 
Sbjct: 368 CKVPFREAVTLGFLMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPIVML 427

Query: 429 IYKPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRGR-KRGKLCLYA 487
           IYKPARKG PYKHRTIQRKD ++E RILACFHSTRNIP+LINL+ESSRG  K+G+LC+YA
Sbjct: 428 IYKPARKGAPYKHRTIQRKDHDSELRILACFHSTRNIPTLINLIESSRGTGKKGRLCVYA 487

Query: 488 MHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQLSSVTVRPMTAISA 547
           MHLMELSERSSAIAMV KARNNGLP W+K     D +VIAFEAYQ L +V VRPMTAIS 
Sbjct: 488 MHLMELSERSSAIAMVHKARNNGLPIWNKIERSTDQMVIAFEAYQHLRAVAVRPMTAISG 547

Query: 548 LSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFV 607
           LSSIHEDIC SAH+KR A+ILLPFHKHQR+DGAMES+GH FH VN+R LQ APCSVGI V
Sbjct: 548 LSSIHEDICTSAHQKRVAMILLPFHKHQRMDGAMESIGHRFHEVNQRVLQRAPCSVGILV 607

Query: 608 DRGLGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSL 667
           DRGLGGT+QVVASEV+Y VV+PFFGGLDD EALAYGM+M EHPGI LTV KFVA +GT  
Sbjct: 608 DRGLGGTSQVVASEVAYKVVIPFFGGLDDREALAYGMKMVEHPGITLTVYKFVAARGTLK 667

Query: 668 TFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASKNQESITLEERLVESSQEIAGVLK 727
            F               D + V +  +++D      +  ES+  EER+VES  +I   LK
Sbjct: 668 RFEKSEHDEKEKKEKETDEEFVRE--LMND-----PRGNESLAYEERVVESKDDIIATLK 720

Query: 728 SMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQQYNPTLN 787
           SM+KCNLF+VGR A  A L+ +     C ELGPVG  L+SSEFSTTASV+V+Q Y+P  +
Sbjct: 721 SMSKCNLFVVGRNAAVASLVKSTD---CPELGPVGRLLSSSEFSTTASVLVVQGYDPAAD 777

Query: 788 LHPLVEEEESDDAN 801
             PLVEE+   D +
Sbjct: 778 TRPLVEEDAEYDQS 791

May operate as a cation/H(+) antiporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFR9|CHX18_ARATH Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1

 Score =  978 bits (2529), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/782 (63%), Positives = 626/782 (80%), Gaps = 8/782 (1%)

Query: 11  ACPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGG 70
           ACPAPMKATSNG FQG+NP+D+ALPL ILQI +V+  TR LA+LL+PLRQPRVIAE+IGG
Sbjct: 8   ACPAPMKATSNGVFQGDNPIDFALPLAILQIVIVIVLTRVLAYLLRPLRQPRVIAEVIGG 67

Query: 71  VLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLG 130
           ++LGPS LGRS+ FL+ VFPKKS+TVLETLAN+GLLFFLFL GLE+D K++ RTGKK+LG
Sbjct: 68  IMLGPSLLGRSKAFLDAVFPKKSLTVLETLANLGLLFFLFLAGLEIDTKALRRTGKKALG 127

Query: 131 IALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLT 190
           IALAGITLPFALGIG+SFVL++T+ KG N    LVFMGV+LSITAFPVLARILAELKLLT
Sbjct: 128 IALAGITLPFALGIGSSFVLKATISKGVNSTAFLVFMGVALSITAFPVLARILAELKLLT 187

Query: 191 TDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSS-LIAVWVLLSGAAFVVFAVFVIRPVL 249
           T++GR+AMSAAAVNDVAAW+LLALAIALS S++S L+++WV LSG AFV+ A F+I P+ 
Sbjct: 188 TEIGRLAMSAAAVNDVAAWILLALAIALSGSNTSPLVSLWVFLSGCAFVIGASFIIPPIF 247

Query: 250 SLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVL 309
             ++RR  EGEP++E Y+C TL++VL   F+TD IGIH++FGAFVVG+++PKEGPFAG L
Sbjct: 248 RWISRRCHEGEPIEETYICATLAVVLVCGFITDAIGIHSMFGAFVVGVLIPKEGPFAGAL 307

Query: 310 IEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSC 369
           +EK+ED+VSGLFLPLYF ASGLKTNVATI+GA SWGLL+LV   ACFGKI+GT+ V+ + 
Sbjct: 308 VEKVEDLVSGLFLPLYFVASGLKTNVATIQGAQSWGLLVLVTATACFGKILGTLGVSLAF 367

Query: 370 KVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAI 429
           K+P+RE++ LGF+MNTKGLVELIVLNIGKDRKVLNDQ FAI+VLMALFTTFITTP++MA+
Sbjct: 368 KIPMREAITLGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMALFTTFITTPVVMAV 427

Query: 430 YKPARKGVP---YKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRGRKRGK-LCL 485
           YKPAR+      YKHR ++R++T T+ RIL CFH   +IPS+INL+E+SRG ++G+ LC+
Sbjct: 428 YKPARRAKKEGEYKHRAVERENTNTQLRILTCFHGAGSIPSMINLLEASRGIEKGEGLCV 487

Query: 486 YAMHLMELSERSSAIAMVQKARNNGLPFWDKK--RDDRDYIVIAFEAYQQLSSVTVRPMT 543
           YA+HL ELSERSSAI MV K R NG+PFW+++    D D +V+AF+A+QQLS V VRPMT
Sbjct: 488 YALHLRELSERSSAILMVHKVRKNGMPFWNRRGVNADADQVVVAFQAFQQLSRVNVRPMT 547

Query: 544 AISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSV 603
           AIS++S IHEDIC +A RK+AA+++LPFHKHQ+LDG++E+    +  VNRR L  APCSV
Sbjct: 548 AISSMSDIHEDICTTAVRKKAAIVILPFHKHQQLDGSLETTRGDYRWVNRRVLLQAPCSV 607

Query: 604 GIFVDRGLGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPK 663
           GIFVDRGLGG++QV A +VSYSVVV FFGG DD EALAYG+RMAEHPGI LTV +FV   
Sbjct: 608 GIFVDRGLGGSSQVSAQDVSYSVVVLFFGGPDDREALAYGLRMAEHPGIVLTVFRFVVSP 667

Query: 664 GTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASKNQESITLEERLVESSQEIA 723
                  +      + +     N +  D+ I+S+ + I+S ++    +E+++  ++ ++ 
Sbjct: 668 ERVGEIVNVEVSNNNNENQSVKNLK-SDEEIMSEIRKISSVDESVKFVEKQIENAAVDVR 726

Query: 724 GVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQQYN 783
             ++ + + NLFLVGRM      +  +    C ELGPVG  L S E ST ASV+V+QQYN
Sbjct: 727 SAIEEVRRSNLFLVGRMPGGEIALAIRENSECPELGPVGSLLISPESSTKASVLVIQQYN 786

Query: 784 PT 785
            T
Sbjct: 787 GT 788

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUQ7|CHX17_ARATH Cation/H(+) antiporter 17 OS=Arabidopsis thaliana GN=CHX17 PE=1 SV=1

 Score =  942 bits (2436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/795 (60%), Positives = 606/795 (76%), Gaps = 31/795 (3%)

Query: 12  CPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGV 71
           CP PMKATSNG FQGENPL++ALPL+ILQIC+V+  TR LAFLL+PLRQPRVIAEI+GG+
Sbjct: 8   CPGPMKATSNGVFQGENPLEHALPLLILQICIVLLLTRLLAFLLRPLRQPRVIAEIVGGI 67

Query: 72  LLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGI 131
           LLGPSALG+S +F+NTVFP KS+TVL+TLAN+GL+FFLFLVGLELD KS+ RTGK++L I
Sbjct: 68  LLGPSALGKSTKFINTVFPPKSLTVLDTLANLGLIFFLFLVGLELDPKSLKRTGKRALSI 127

Query: 132 ALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTT 191
           ALAGITLPF LGIGTSF LRS++  GA++AP LVFMGV+LSITAFPVLARILAE+KLLTT
Sbjct: 128 ALAGITLPFVLGIGTSFALRSSIADGASKAPFLVFMGVALSITAFPVLARILAEIKLLTT 187

Query: 192 DLGRIAMSAAAVNDVAAWVLLALAIALSSSSSS-LIAVWVLLSGAAFVVFAVFVIRPVLS 250
           D+G+IA+SAAAVNDVAAW+LLALA+ALS   SS L ++WV LSG  FV+F +FV++P + 
Sbjct: 188 DIGKIALSAAAVNDVAAWILLALAVALSGEGSSPLTSLWVFLSGCGFVLFCIFVVQPGIK 247

Query: 251 LMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLI 310
           L+A+R PEGEPV ELYVC TL +VLAASFVTD IGIHALFGAFV+G+I PKEG FA  L+
Sbjct: 248 LIAKRCPEGEPVNELYVCCTLGIVLAASFVTDFIGIHALFGAFVIGVIFPKEGNFANALV 307

Query: 311 EKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCK 370
           EK+ED+VSGLFLPLYF +SGLKTNVATI+GA SWGLL+LVI NACFGKI+GTV+V+  CK
Sbjct: 308 EKVEDLVSGLFLPLYFVSSGLKTNVATIQGAQSWGLLVLVIFNACFGKIIGTVLVSLYCK 367

Query: 371 VPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIY 430
           VPL +SLALGF+MNTKGLVELIVLNIGKDR VLNDQ FAI+VLMA+FTTF+TTP+++A+Y
Sbjct: 368 VPLDQSLALGFLMNTKGLVELIVLNIGKDRGVLNDQIFAIMVLMAIFTTFMTTPLVLAVY 427

Query: 431 KPARK--GVPYKHRTIQRKDTETE-FRILACFHSTRNIPSLINLVESSRG-RKRGKLCLY 486
           KP +      YK+RT++  +   +   ++ CF S  NIP+++NL+E+SRG  ++  L +Y
Sbjct: 428 KPGKSLTKADYKNRTVEETNRSNKPLCLMFCFQSIMNIPTIVNLIEASRGINRKENLSVY 487

Query: 487 AMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDR-----DYIVIAFEAYQQLSSVTVRP 541
           AMHLMELSERSSAI M  K R NGLPFW+K + +      D +V+AFEA+++LS V+VRP
Sbjct: 488 AMHLMELSERSSAILMAHKVRRNGLPFWNKDKSENNSSSSDMVVVAFEAFRRLSRVSVRP 547

Query: 542 MTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPC 601
           MTAIS +++IHEDIC SA RK+ A+++LPFHKH RLD   E+  + +  +N++ ++ +PC
Sbjct: 548 MTAISPMATIHEDICQSAERKKTAMVILPFHKHVRLDRTWETTRNDYRWINKKVMEESPC 607

Query: 602 SVGIFVDRGLGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFV- 660
           SV I VDRGLGGTT+V +S+ S ++ V FFGG DD EALA+ +RMAEHPGI LTVV+F+ 
Sbjct: 608 SVAILVDRGLGGTTRVASSDFSLTITVLFFGGNDDREALAFAVRMAEHPGISLTVVRFIP 667

Query: 661 ----APKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASKNQES-------- 708
                P+   +    D        L  G    +  +AI      I  K            
Sbjct: 668 SDEFKPENVRIEITED-------QLCSGATRLIDIEAITELKAKIKEKESSRSNSDSESH 720

Query: 709 ITLEERLVESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASS 768
           I  EE++V+  +E+  V+K  +K NLFLVG+    +            ELGP+G  L  S
Sbjct: 721 IIYEEKIVKCYEEVIEVIKEYSKSNLFLVGKSPEGSVASGINVRSDTPELGPIGNLLTES 780

Query: 769 E-FSTTASVVVLQQY 782
           E  ST ASV+V+QQY
Sbjct: 781 ESVSTVASVLVVQQY 795

Operates as a K(+)/H(+) antiporter that controls K(+) acquisition and homeostasis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1HDT3|CHX16_ARATH Cation/H(+) antiporter 16 OS=Arabidopsis thaliana GN=CHX16 PE=2 SV=1

 Score =  815 bits (2105), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/806 (54%), Positives = 566/806 (70%), Gaps = 52/806 (6%)

Query: 8   PPGACP---APMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVI 64
           P   CP   A MK TSNG F GE+PLD+A PL+ILQICLVVA TR LAFLL+P+RQPRV+
Sbjct: 10  PAMKCPKNVAMMKTTSNGVFDGESPLDFAFPLVILQICLVVAVTRSLAFLLRPMRQPRVV 69

Query: 65  AEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRT 124
           AEIIGG+LLGPSALGR   + N++FP +S+TVL+TLAN+GLL FLFLVGLE+D+ S+ RT
Sbjct: 70  AEIIGGILLGPSALGRITSYKNSIFPARSLTVLDTLANLGLLLFLFLVGLEIDLTSLRRT 129

Query: 125 GKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQA--PLLVFMGVSLSITAFPVLARI 182
           GKK++ IA AG+ LPF +GI TSF        G N    P ++FMGV+LSITAF VLARI
Sbjct: 130 GKKAISIAAAGMLLPFGMGIVTSFAFPEASSSGDNSKVLPFIIFMGVALSITAFGVLARI 189

Query: 183 LAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSS-LIAVWVLLSGAAFVVFA 241
           LAELKLLTTDLGRI+M+AAA+NDVAAWVLLALA++LS   +S L+ +WVLLSG AFV+  
Sbjct: 190 LAELKLLTTDLGRISMNAAAINDVAAWVLLALAVSLSGDRNSPLVPLWVLLSGIAFVIAC 249

Query: 242 VFVIRPVLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPK 301
             ++  +   ++RR PEGEP+ E+YVC+ L  VL A F TD IGIHA+FGAFV+G++ PK
Sbjct: 250 FLIVPRIFKFISRRCPEGEPIGEMYVCVALCAVLLAGFATDAIGIHAIFGAFVMGVLFPK 309

Query: 302 EGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVG 361
            G F+  ++EKIED+V GL LPLYF  SGLKT++ TI+G  SWG L LVI+ ACFGKIVG
Sbjct: 310 -GHFSDAIVEKIEDLVMGLLLPLYFVMSGLKTDITTIQGVKSWGRLALVIVTACFGKIVG 368

Query: 362 TVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFI 421
           TV VA  CKV LRES+ LG +MNTKGLVELIVLNIGKDRKVL+DQ FAI+VLMA+FTTFI
Sbjct: 369 TVSVALLCKVRLRESVVLGVLMNTKGLVELIVLNIGKDRKVLSDQTFAIMVLMAIFTTFI 428

Query: 422 TTPILMAIYKPAR-----KGVPYKHRTIQRK---DTETE----FRILACFHSTRNIPSLI 469
           TTPI++A+YKP+        V YK+R  +RK   D E E     ++L C  S+++I  ++
Sbjct: 429 TTPIVLALYKPSETTQTHSSVSYKNRKHRRKIENDEEGEKMQQLKVLVCLQSSKDIDPMM 488

Query: 470 NLVESSRGRKRGK--LCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIA 527
            ++E++RG    K   C+Y MHL +LSER S+I MVQK R+NGLPFW+KKR++   + +A
Sbjct: 489 KIMEATRGSNETKERFCVYVMHLTQLSERPSSIRMVQKVRSNGLPFWNKKRENSSAVTVA 548

Query: 528 FEAYQQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQR-LDGAMESLGH 586
           FEA  +LSSV+VR +TAIS LS+IHEDIC+SA  K  A ++LPFHK  R L+   E++  
Sbjct: 549 FEASSKLSSVSVRSVTAISPLSTIHEDICSSADSKCTAFVILPFHKQWRSLEKEFETVRS 608

Query: 587 TFHLVNRRALQHAPCSVGIFVDRGLG-GTTQVVASEVSYSVVVPFFGGLDDCEALAYGMR 645
            +  +N+R L+++PCSVGI VDRGLG   + V +S  S SV V FFGG DD EAL YG+R
Sbjct: 609 EYQGINKRVLENSPCSVGILVDRGLGDNNSPVASSNFSLSVNVLFFGGCDDREALVYGLR 668

Query: 646 MAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIIS---DFKSIA 702
           MAEHPG+ LTVV    P+                   R D  +  + ++ S    F +  
Sbjct: 669 MAEHPGVNLTVVVISGPESA-----------------RFDRLEAQETSLCSLDEQFLAAI 711

Query: 703 SKNQESITLEERLVESSQEIAGVLKSMNKCNLFLVGR-----MAPTAPLMDTKSAEYCSE 757
            K   +   EER V S++E+  +++   +C++ LVG+     M    P+M  +    C E
Sbjct: 712 KKRANAARFEERTVNSTEEVVEIIRQFYECDILLVGKSSKGPMVSRLPVMKIE----CPE 767

Query: 758 LGPVGCFLASSEFSTTASVVVLQQYN 783
           LGPVG  + S+E ST+ SV+V+QQY 
Sbjct: 768 LGPVGNLIVSNEISTSVSVLVVQQYT 793

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIT5|CHX15_ARATH Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/821 (48%), Positives = 571/821 (69%), Gaps = 28/821 (3%)

Query: 1   MATQQHPPPGA---CPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKP 57
           MAT + P   A   C AP   T+NG +QG+NPLD++LPL +LQ+ LVV  TRF  F+LKP
Sbjct: 1   MATSEEPSTDASIICYAPSMITTNGVWQGDNPLDFSLPLFVLQLTLVVVVTRFFVFILKP 60

Query: 58  LRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELD 117
            RQPRVI+EI+GG++LGPS LGRS +F +T+FP++S+ VLET+AN+GLL+FLFLVG+E+D
Sbjct: 61  FRQPRVISEILGGIVLGPSVLGRSTKFAHTIFPQRSVMVLETMANVGLLYFLFLVGVEMD 120

Query: 118 IKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFP 177
           I  + +TGK++L IA+ G+ LPF +G   SF +  +      Q   ++F+GV+LS+TAFP
Sbjct: 121 IMVVRKTGKRALTIAIGGMVLPFLIGAAFSFSMHRSE-DHLGQGTYILFLGVALSVTAFP 179

Query: 178 VLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIAL-SSSSSSLIAVWVLLSGAA 236
           VLARILAELKL+ T++GRI+MSAA VND+ AW+LLALAIAL  S  +S  ++WV++S A 
Sbjct: 180 VLARILAELKLINTEIGRISMSAALVNDMFAWILLALAIALAESDKTSFASLWVMISSAV 239

Query: 237 FVVFAVFVIRPVLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVG 296
           F+   VFV+RP ++ + R++PEGE   E ++C+ L+ V+ + F+TD IG H++FGAFV G
Sbjct: 240 FIAVCVFVVRPGIAWIIRKTPEGENFSEFHICLILTGVMISGFITDAIGTHSVFGAFVFG 299

Query: 297 IIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACF 356
           +++P  GP    LIEK+ED VSGL LPL+FA SGLKTN+A I+G  +W  L LVI  AC 
Sbjct: 300 LVIPN-GPLGLTLIEKLEDFVSGLLLPLFFAISGLKTNIAAIQGPATWLTLFLVIFLACA 358

Query: 357 GKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMAL 416
           GK++GTV+VA+   +P+RE + LG ++NTKGLVE+IVLN+GKD+KVL+D+ FA +VL+AL
Sbjct: 359 GKVIGTVIVAFFHGMPVREGITLGLLLNTKGLVEMIVLNVGKDQKVLDDETFATMVLVAL 418

Query: 417 FTTFITTPILMAIYKPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSR 476
             T + TPI+  +YKP +K V YK RTIQ+   ++E R+L C H+ RN+P++INL+E+S 
Sbjct: 419 VMTGVITPIVTILYKPVKKSVSYKRRTIQQTKPDSELRVLVCVHTPRNVPTIINLLEASH 478

Query: 477 GRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQLSS 536
             KR  +C+Y +HL+EL+ R+SA+ +V   R +G P  ++ +   D+I+ AFE Y+Q ++
Sbjct: 479 PTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHAA 538

Query: 537 -VTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRA 595
            V V+P+TAIS  S++HED+C+ A  KR + I++PFHK Q +DG MES    + LVN+  
Sbjct: 539 FVAVQPLTAISPYSTMHEDVCSLAEDKRVSFIIIPFHKQQTVDGGMESTNPAYRLVNQNL 598

Query: 596 LQHAPCSVGIFVDRGLGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLT 655
           L+++PCSVGI VDRGL G T++ ++ VS  V V FFGG DD EALAY  RMA+HPGI LT
Sbjct: 599 LENSPCSVGILVDRGLNGATRLNSNTVSLQVAVLFFGGPDDREALAYAWRMAQHPGITLT 658

Query: 656 VVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVG--DDAIISDFKSIASKNQESITLEE 713
           V++F+  +  + T  + A     + + + D+ +    DD  I+ F++  +   ESI   E
Sbjct: 659 VLRFIHDEDEADTASTRATNDSDLKIPKMDHRKQRQLDDDYINLFRA-ENAEYESIVYIE 717

Query: 714 RLVESSQEIAGVLKSMNKC-NLFLVGR----MAP-TAPLMDTKSAEYCSELGPVGCFLAS 767
           +LV + +E    ++SM+   +LF+VGR     +P TA L D      C ELG +G  LAS
Sbjct: 718 KLVSNGEETVAAVRSMDSSHDLFIVGRGEGMSSPLTAGLTDWSE---CPELGAIGDLLAS 774

Query: 768 SEFSTTASVVVLQQYNPTLNLHPLVEEEESDDANEVPDTPM 808
           S+F+ T SV+V+QQY         V     +D  + P++P+
Sbjct: 775 SDFAATVSVLVVQQY---------VGSWAQEDDMDFPESPV 806

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M353|CHX20_ARATH Cation/H(+) antiporter 20 OS=Arabidopsis thaliana GN=CHX20 PE=2 SV=1

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/818 (53%), Positives = 572/818 (69%), Gaps = 59/818 (7%)

Query: 16  MKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGP 75
           +K +SNG +QG+NPL++A PL+I+Q  L++A +RFLA L KPLRQP+VIAEI+GG+LLGP
Sbjct: 8   VKTSSNGVWQGDNPLNFAFPLLIVQTALIIAVSRFLAVLFKPLRQPKVIAEIVGGILLGP 67

Query: 76  SALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAG 135
           SALGR+  +++ +FPK SM +LE++A+IGLLFFLFLVGLELD+ SI R+GK++ GIA+AG
Sbjct: 68  SALGRNMAYMDRIFPKWSMPILESVASIGLLFFLFLVGLELDLSSIRRSGKRAFGIAVAG 127

Query: 136 ITLPFALGIGTSFVLRSTVLKGANQ---APLLVFMGVSLSITAFPVLARILAELKLLTTD 192
           ITLPF  G+G +FV+R+T+   A++   A  LVFMGV+LSITAFPVLARILAELKLLTT 
Sbjct: 128 ITLPFIAGVGVAFVIRNTLYTAADKPGYAEFLVFMGVALSITAFPVLARILAELKLLTTQ 187

Query: 193 LGRIAMSAAAVNDVAAWVLLALAIALSS--------SSSSLIAVWVLLSGAAFVVFAVFV 244
           +G  AM+AAA NDVAAW+LLALA+AL+           S L+++WVLLSGA FVVF + V
Sbjct: 188 IGETAMAAAAFNDVAAWILLALAVALAGNGGEGGGEKKSPLVSLWVLLSGAGFVVFMLVV 247

Query: 245 IRPVLSLMARR-SPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEG 303
           IRP +  +A+R SPE + V+E YVC+TL+ V+ + F TD IGIH++FGAFV G+ +PK+G
Sbjct: 248 IRPGMKWVAKRGSPENDVVRESYVCLTLAGVMVSGFATDLIGIHSIFGAFVFGLTIPKDG 307

Query: 304 PFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTV 363
            F   LIE+IED VSGL LPLYFA SGLKT+VA IRGA SWG+L LV++ AC GKIVGT 
Sbjct: 308 EFGQRLIERIEDFVSGLLLPLYFATSGLKTDVAKIRGAESWGMLGLVVVTACAGKIVGTF 367

Query: 364 VVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITT 423
           VVA   KVP RE+L LGF+MNTKGLVELIVLNIGK++KVLND+ FAILVLMALFTTFITT
Sbjct: 368 VVAVMVKVPAREALTLGFLMNTKGLVELIVLNIGKEKKVLNDETFAILVLMALFTTFITT 427

Query: 424 PILMAIYKPARKGVPYKHRTIQ-----RKDTETEFRILACFHSTRNIPSLINLVESSRGR 478
           P +MAIYKPAR      HR ++     +  T+ E RILAC H   N+ SLI+LVES R  
Sbjct: 428 PTVMAIYKPARG----THRKLKDLSASQDSTKEELRILACLHGPANVSSLISLVESIRTT 483

Query: 479 KRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDY--IVIAFEAYQQLSS 536
           K  +L L+ MHLMEL+ERSS+I MVQ+AR NGLPF  + R    +  ++  FEAY+QL  
Sbjct: 484 KILRLKLFVMHLMELTERSSSIIMVQRARKNGLPFVHRYRHGERHSNVIGGFEAYRQLGR 543

Query: 537 VTVRPMTAISALSSIHEDICASAHRKRAALILLPFHK---------HQRLDGAM-----E 582
           V VRP+TA+S L ++HEDIC  A  KR  +I+LPFHK         H   DG       E
Sbjct: 544 VAVRPITAVSPLPTMHEDICHMADTKRVTMIILPFHKRWNADHGHSHHHQDGGGDGNVPE 603

Query: 583 SLGHTFHLVNRRALQHAPCSVGIFVDRGLGG----TTQVVASEVSYSVVVPFFGGLDDCE 638
           ++GH + LVN+R L++APCSV + VDRGLG     T  +  S V   V V FFGG DD E
Sbjct: 604 NVGHGWRLVNQRVLKNAPCSVAVLVDRGLGSIEAQTLSLDGSNVVERVCVIFFGGPDDRE 663

Query: 639 ALAYGMRMAEHPGIKLTVVKFVAP---KGTSLTF------GSDAPGVISIDLLRGDNDQV 689
           ++  G RMAEHP +K+TV++F+     + T++T       G +         +  + ++ 
Sbjct: 664 SIELGGRMAEHPAVKVTVIRFLVRETLRSTAVTLRPAPSKGKEKNYAFLTTNVDPEKEKE 723

Query: 690 GDDAIISDFKSIASKNQESITLEERLVES-SQEIAGVLKSMNKCNLFLVGR-MAPTAPL- 746
            D+  + DFK   SK +E +  +E+   +  +EI  + +S +  +L +VGR   P+A + 
Sbjct: 724 LDEGALEDFK---SKWKEMVEYKEKEPNNIIEEILSIGQSKD-FDLIVVGRGRIPSAEVA 779

Query: 747 -MDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQQYN 783
            +  + AE+  ELGP+G  LASS      S++V+QQ+N
Sbjct: 780 ALAERQAEH-PELGPIGDVLASSINHIIPSILVVQQHN 816

Operates as a K(+)/H(+) antiporter that maintains K(+) homeostasis in guard cells and could regulate pH. Plays a critical role in osmoregulation through the control of stomates opening.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYD4|CHX23_ARATH Cation/H(+) antiporter 23, chloroplastic OS=Arabidopsis thaliana GN=CHX23 PE=1 SV=1

 Score =  440 bits (1132), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 271/783 (34%), Positives = 434/783 (55%), Gaps = 42/783 (5%)

Query: 24  FQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSER 83
           ++  + L  +LP  I Q+ +     R L +L +PL  P  +A+I+ G+L  PS LG +  
Sbjct: 41  WESGSTLASSLPFFITQLFVANLSYRVLYYLTRPLYLPPFVAQILCGLLFSPSVLGNTRF 100

Query: 84  FLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALG 143
            +  VFP +   VLET AN+ L++ +FL+GL +D++ +  T  K + IA  G+ +   +G
Sbjct: 101 IIAHVFPYRFTMVLETFANLALVYNIFLLGLGMDLRMVRITELKPVIIAFTGLLVALPVG 160

Query: 144 IGTSFVLRSTVLKGANQAPLL----VFMGVSLSITAFPVLARILAELKLLTTDLGRIAMS 199
               +      L G      +    VF  V+L+ T FP LARILA+LKLL +D+GR AM 
Sbjct: 161 AFLYY------LPGNGHPDKIISGCVFWSVALACTNFPDLARILADLKLLRSDMGRTAMC 214

Query: 200 AAAVNDVAAWVLLALAIALSSSSSSLIAV--WVLLSGAAFVVFAVFVIRPVLSLMARRSP 257
           AA V D+  WVLL    A  S S +   +  +V+++ A FV+  +FVIRP ++ +  ++ 
Sbjct: 215 AAIVTDLCTWVLLVFGFASFSKSGTWNKMMPFVIITTAIFVLLCIFVIRPGIAWIFAKTV 274

Query: 258 EGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMV 317
           +   V + +V   L  V+    +TD  G+H++ GAF+ G+ +P +     ++ EK+ D +
Sbjct: 275 KAGHVGDTHVWFILGGVVLCGLITDACGVHSITGAFLFGLSIPHDHIIRNMIEEKLHDFL 334

Query: 318 SGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESL 377
           SG+ +PL++   GL+ ++  +   T   ++++VI ++   KIV TV+ +    +P+R++ 
Sbjct: 335 SGILMPLFYIICGLRADIGFMLQFTDKFMMVVVICSSFLVKIVTTVITSLFMHIPMRDAF 394

Query: 378 ALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIYKPARKGV 437
           A+G +MNTKG + L+VLN G+D K L+   +  + +  L  + +  P+L   YKP +K  
Sbjct: 395 AIGALMNTKGTLSLVVLNAGRDTKALDSPMYTHMTIALLVMSLVVEPLLAFAYKPKKKLA 454

Query: 438 PYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERS 497
            YKHRT+Q+   ETE R+LAC H   N+  + NL++ S   K+  L ++A+HL+EL+ R+
Sbjct: 455 HYKHRTVQKIKGETELRVLACVHVLPNVSGITNLLQVSNATKQSPLSVFAIHLVELTGRT 514

Query: 498 SAIAMVQ----KARNNGLPFWDKKRDDRDYIVIAFEAYQ-QLSSVTVRPMTAISALSSIH 552
           +A  ++     K + N   F D+ R + D I   FEA +    ++TV+ +TA+S  +++H
Sbjct: 515 TASLLIMNDECKPKAN---FSDRVRAESDQIAETFEAMEVNNDAMTVQTITAVSPYATMH 571

Query: 553 EDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVDRGLG 612
           EDIC  A  KR   I+LP+HKH   DG M     +   +N+  L HAPCSVGI VDRG+ 
Sbjct: 572 EDICVLAEDKRVCFIILPYHKHLTPDGRMGEGNSSHAEINQNVLSHAPCSVGILVDRGMA 631

Query: 613 --GTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFG 670
              +       +   V + F GG DD EAL+Y  RM     IKLTVV+FV  +   ++ G
Sbjct: 632 MVRSESFRGESMKREVAMLFVGGPDDREALSYAWRMVGQHVIKLTVVRFVPGREALISSG 691

Query: 671 SDAPGVISIDLLRGDNDQVGDDAIISDFKSIASKNQESITLEERLVESSQEIAGVLKSM- 729
             A           + ++  DD  I +F +  + N  S+   E++V   Q+    ++ M 
Sbjct: 692 KVAA--------EYEREKQVDDECIYEF-NFKTMNDSSVKYIEKVVNDGQDTIATIREME 742

Query: 730 --NKCNLFLVGR----MAP-TAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQQY 782
             N  +L++VGR     +P TA L D  S+    ELG +G  LASS F+  ASV+V+QQY
Sbjct: 743 DNNSYDLYVVGRGYNSDSPVTAGLNDWSSS---PELGTIGDTLASSNFTMHASVLVIQQY 799

Query: 783 NPT 785
           + T
Sbjct: 800 SAT 802

Operates as a K(+)/H(+) antiporter or Na(+)/H(+) antiporter of the chloroplast envelope that functions in pH homeostasis and chloroplast development. Monovalent cation transporter with a preference for Cs(+), K(+) and Rb(+) relative to Na(+) or Li(+). Required for pollen tube guidance, but not for normal pollen development. May also be involved in the development or function of the female gametophyte.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKA9|CHX21_ARATH Cation/H(+) antiporter 21 OS=Arabidopsis thaliana GN=CHX21 PE=2 SV=2

 Score =  405 bits (1042), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 266/790 (33%), Positives = 430/790 (54%), Gaps = 56/790 (7%)

Query: 23  SFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSE 82
           +  G N +  A P  + Q+ +     R L + LKPL  P  +A+I+ G+L  P+ LG +E
Sbjct: 26  AMHGSNTISAAAPFFMTQLSVANLTYRILYYFLKPLCLPPFVAQILCGLLFSPTVLGNNE 85

Query: 83  RFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFAL 142
             L  +FP K   +LET AN+ L++ +FL+GL LD++ I     K + IA+ G+      
Sbjct: 86  VVLKLIFPYKYTMLLETFANLALVYNVFLLGLGLDLRMIKIKDIKPVIIAIVGLLAALLA 145

Query: 143 GIGTSFVLRS----TVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAM 198
           G G  ++  +     +L G       ++  ++   T FP LARILA+LKLL TD+G  AM
Sbjct: 146 GAGLYYLPSNGEADKILAGC------MYWSIAFGCTNFPDLARILADLKLLRTDMGHTAM 199

Query: 199 SAAAVNDVAAWVLLALAIALSSSSS--SLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRS 256
            AA V D+  W+L    +A+ S S   + +  + L S  AFV+   FVI+P ++ +   +
Sbjct: 200 CAAVVTDLCTWILFIFGMAIFSKSGVRNEMLPYSLASTIAFVLLCYFVIQPGVAWIFNNT 259

Query: 257 PEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDM 316
            EG  V + +V  TL+ V+  S +T+  G+H++ GAF+ G+ +P +     ++ EK+ D 
Sbjct: 260 VEGGQVGDTHVWYTLAGVIICSLITEVCGVHSITGAFLFGLSIPHDHIIRKMIEEKLHDF 319

Query: 317 VSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRES 376
           +SG+ +PL++   GL+ ++  +    S G++ +V   +   KI+ T+  +   ++PLR+ 
Sbjct: 320 LSGMLMPLFYIICGLRADIGYMNRTVSVGMMAVVTSASVMVKILSTMFCSIFLRIPLRDG 379

Query: 377 LALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIYKPARKG 436
           LA+G +MNTKG + L++LN G+D K L+   +  L L  L  + +  P+L   YKP +K 
Sbjct: 380 LAIGALMNTKGTMALVILNAGRDTKALDVIMYTHLTLAFLVMSMVVQPLLAIAYKPKKKL 439

Query: 437 VPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSER 496
           + YK+RTIQ+   E+E  +L C H   N+  + NL++ S   K+  L ++A+HL+EL+ R
Sbjct: 440 IFYKNRTIQKHKGESELCVLTCVHVLPNVSGITNLLQLSNPTKKSPLNVFAIHLVELTGR 499

Query: 497 SSA--IAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQ-QLSSVTVRPMTAISALSSIHE 553
           ++A  + M  +A+     F D+ R + D I   F A +     V V+ +TA+S  +++ E
Sbjct: 500 TTASLLIMNDEAKPKA-NFADRVRAESDQIAEMFTALEVNNDGVMVQTITAVSPYATMDE 558

Query: 554 DICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHL-VNRRALQHAPCSVGIFVDRGL- 611
           DIC  A  K+A  ILLP+HK+   DG +   G+  H  +N+  + HAPCSVGI VDRG+ 
Sbjct: 559 DICLLAEDKQACFILLPYHKNMTSDGRLNE-GNAVHAEINQNVMSHAPCSVGILVDRGMT 617

Query: 612 ----------GGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVA 661
                     G TT+         + + F GG DD EALAY  RM     ++LTVV+FV 
Sbjct: 618 TVRFESFMFQGETTK-------KEIAMLFLGGRDDREALAYAWRMVGQEMVQLTVVRFVP 670

Query: 662 PKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASKNQESITLEERLVESSQE 721
            +   ++ G  A           + D+  D+  I +F +  + N  S+T  E++V++ QE
Sbjct: 671 SQEALVSAGEAAD--------EYEKDKHVDEESIYEF-NFKTMNDPSVTYVEKVVKNGQE 721

Query: 722 -IAGV--LKSMNKCNLFLVGR-----MAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTT 773
            I  +  L+  N  +L++VGR        T+ L D  S     +LG +G  L SS F+  
Sbjct: 722 TITAILELEDNNSYDLYIVGRGYQVETPVTSGLTDWNST---PDLGIIGDTLISSNFTMQ 778

Query: 774 ASVVVLQQYN 783
           ASV+V+QQY+
Sbjct: 779 ASVLVVQQYS 788

Operates as a Na(+)/H(+) antiporter that plays a role in regulation of xylem Na(+) concentration and, consequently, Na(+) accumulation in the leaf. Required for pollen tube guidance, but not for normal pollen development. May also be involved in the development or function of the female gametophyte.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LMJ1|CHX14_ARATH Cation/H(+) antiporter 14 OS=Arabidopsis thaliana GN=CHX14 PE=2 SV=1

 Score =  389 bits (998), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 255/808 (31%), Positives = 431/808 (53%), Gaps = 45/808 (5%)

Query: 12  CPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGV 71
           C      TS G F G +PL YA+PL++LQ+ +++  +R L  LLKPL+Q  + A+++ G+
Sbjct: 28  CQKNHMLTSKGVFLGSDPLKYAMPLMLLQMSVIIITSRLLYRLLKPLKQGMISAQVLAGI 87

Query: 72  LLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGI 131
           +LGPS  G+S  ++    P      L+TL+N+G    LFL+GL +D   I + G K++ I
Sbjct: 88  ILGPSLFGQSSAYMQMFLPISGKITLQTLSNLGFFIHLFLLGLRIDASIIRKAGSKAILI 147

Query: 132 ALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVF---MGVSLS-ITAFPVLARILAELK 187
             A   LPF+LG  T   L++T     N  P +V      +SL+ +T+FPV   +LAEL 
Sbjct: 148 GTASYALPFSLGNLTVLFLKNTY----NLPPDVVHCISTVISLNAMTSFPVTTTVLAELN 203

Query: 188 LLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRP 247
           +L +DLGR+A + + V +  +W+ +AL   +     +L +VW  +   A ++   FV RP
Sbjct: 204 ILNSDLGRLATNCSIVCEAFSWI-VALVFRMFLRDGTLASVWSFVWVTALILVIFFVCRP 262

Query: 248 -VLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFA 306
            ++ L  RRS   +   E+     + ++L  S  ++ +G+HA FGAF +G+ +P   P  
Sbjct: 263 AIIWLTERRSISIDKAGEIPFFPIIMVLLTISLTSEVLGVHAAFGAFWLGVSLPDGPPLG 322

Query: 307 GVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVA 366
             L  K+E   + L LP + + SGL+TN   I G +   ++  VIL     K +GT   +
Sbjct: 323 TGLTTKLEMFATSLMLPCFISISGLQTNFFII-GESHVKIIEAVILITYGCKFLGTAAAS 381

Query: 367 WSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPIL 426
             C + + ++ +L  +M  +G++E+    + KD KVLN + F +L++  L  T I+  ++
Sbjct: 382 AYCNIQIGDAFSLALLMCCQGVIEIYTCVMWKDEKVLNTECFNLLIITLLLVTGISRFLV 441

Query: 427 MAIYKPARKGVPYKHRTI-QRKDTETEFRILACFHSTRNIPSLINLVESSRGRKRGKLCL 485
           + +Y P+++      RTI   +    +FR+L C ++  N+PS++NL+E+S   +   + +
Sbjct: 442 VCLYDPSKRYRSKSKRTILDTRQRNLQFRLLLCVYNVENVPSMVNLLEASYPSRFSPISV 501

Query: 486 YAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQLSSVTV--RPMT 543
           + +HL+EL  R+ A+ +V   + N L   D       +IV  F+ ++Q +  T+  +  T
Sbjct: 502 FTLHLVELKGRAHAV-LVPHHQMNKL---DPNTVQSTHIVNGFQRFEQQNQGTLMAQHFT 557

Query: 544 AISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSV 603
           A +  SSI++DIC  A  K+A LI++PFHK   +DG ++ +  +   +N   L+ APCSV
Sbjct: 558 AAAPFSSINDDICTLALDKKATLIVIPFHKQYAIDGTVDHVNPSIRNINLNVLEKAPCSV 617

Query: 604 GIFVDRG-LGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAP 662
           GIF+DRG   G   V+ S    +V V F  G DD EALA+ MR+AEHP + +T++ F   
Sbjct: 618 GIFIDRGETEGRRSVLMSYTWRNVAVIFIEGRDDAEALAFSMRIAEHPEVSVTMIHFRHK 677

Query: 663 KGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASKNQESITLEERLVESSQEI 722
                    D               ++ +  +I+DFK+ A  ++  I+  E +V    E 
Sbjct: 678 SSLQQNHVVDV------------ESELAESYLINDFKNFA-MSKPKISYREEIVRDGVET 724

Query: 723 AGVLKSM-NKCNLFLVGRMA--PTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVL 779
             V+ S+ +  +L +VGR     ++ L        C ELG +G   ASS+F  +  +V+ 
Sbjct: 725 TQVISSLGDSFDLVVVGRDHDLESSVLYGLTDWSECPELGVIGDMFASSDFHFSV-LVIH 783

Query: 780 QQYNPTLNLHPLVEEEESDDANEVPDTP 807
           QQ   +L +         D++ ++P +P
Sbjct: 784 QQEGDSLAM---------DNSYKLPASP 802

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|O22920|CHX13_ARATH Cation/H(+) symporter 13 OS=Arabidopsis thaliana GN=CHX13 PE=1 SV=1

 Score =  354 bits (909), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 247/811 (30%), Positives = 425/811 (52%), Gaps = 55/811 (6%)

Query: 12  CPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGV 71
           C A    TS G F   NPL YALPL++LQ+ +++  +R +  +L+PL+Q  + A+++ GV
Sbjct: 30  CQAQNMLTSRGIFMKSNPLKYALPLLLLQMSVIIVTSRLIFRVLQPLKQGMISAQVLTGV 89

Query: 72  LLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGI 131
           +LGPS LG +  ++N   P     +++TL+N+G +  LFL+GL++D   I + G K++ I
Sbjct: 90  VLGPSFLGHNVIYMNMFLPAGGKIIIQTLSNVGFVIHLFLLGLKIDGSIIRKAGSKAILI 149

Query: 132 ALAGITLPFALG------IGTSFVLRSTVLKGANQAPLLVFMGVSL-SITAFPVLARILA 184
             A    PF+LG      I  +  L S V+   + A       +SL S+T+FPV   +LA
Sbjct: 150 GTASYAFPFSLGNLTIMFISKTMGLPSDVISCTSSA-------ISLSSMTSFPVTTTVLA 202

Query: 185 ELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFV 244
           EL +L ++LGR+A   + V +V +W  +ALA  L +   ++ +++ L      ++   FV
Sbjct: 203 ELNILNSELGRLATHCSMVCEVCSW-FVALAFNLYTRDRTMTSLYALSMIIGLLLVIYFV 261

Query: 245 IRPVLSLMARRSPEGEPVKELYVCITLSMVLAASFVT-DTIGIHALFGAFVVGIIMPKEG 303
            RP++  + +R  +    K++     + ++L+ + ++ + +G+HA FGAF +G+ +P   
Sbjct: 262 FRPIIVWLTQRKTKSMDKKDVVPFFPVLLLLSIASLSGEAMGVHAAFGAFWLGVSLPDGP 321

Query: 304 PFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLL-VILNACFG-KIVG 361
           P    L  K+E   S LFLP + A SGL+TN   I  +    ++++ +IL   +G K +G
Sbjct: 322 PLGTELAAKLEMFASNLFLPCFIAISGLQTNFFEITESHEHHVVMIEIILLITYGCKFLG 381

Query: 362 TVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFI 421
           T   +  C+  + ++L L F+M  +G++E+    + KD +V++ + F ++++  LF T I
Sbjct: 382 TAAASAYCQTQIGDALCLAFLMCCQGIIEVYTTIVWKDAQVVDTECFNLVIITILFVTGI 441

Query: 422 TTPILMAIYKPARKGVPYKHRTI-QRKDTETEFRILACFHSTRNIPSLINLVESSRGRKR 480
           +  +++ +Y P+++      RTI   +    + R+L   ++  N+PS++NL+E++   + 
Sbjct: 442 SRFLVVYLYDPSKRYKSKSKRTILNTRQHNLQLRLLLGLYNVENVPSMVNLLEATYPTRF 501

Query: 481 GKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQ--LSSVT 538
             +  + +HL+EL  R+ A+       N      D       +IV AF+ ++Q    ++ 
Sbjct: 502 NPISFFTLHLVELKGRAHALLTPHHQMNK----LDPNTAQSTHIVNAFQRFEQKYQGALM 557

Query: 539 VRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQH 598
            +  TA +  SSI+ DIC  A  K+A LI++PFHK   +DG +  +      +N   L  
Sbjct: 558 AQHFTAAAPYSSINNDICTLALDKKATLIVIPFHKQYAIDGTVGQVNGPIRTINLNVLDA 617

Query: 599 APCSVGIFVDRG-LGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVV 657
           APCSV IF+DRG   G   V+ +    +V + F GG DD EALA  MRMAE P + +T++
Sbjct: 618 APCSVAIFIDRGETEGRRSVLMTNTWQNVAMLFIGGKDDAEALALCMRMAEKPDLNVTMI 677

Query: 658 KFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASKNQESITLEERLVE 717
            F                     L   D   + +  +ISDFKS A+ N+  I   E +V 
Sbjct: 678 HFRHKSA----------------LQDEDYSDMSEYNLISDFKSYAA-NKGKIHYVEEIVR 720

Query: 718 SSQEIAGVLKSM-NKCNLFLVGRMA--PTAPLMDTKSAEYCSELGPVGCFLASSEFSTTA 774
              E   V+ S+ +  ++ LVGR     ++ L        C ELG +G  L S +F  + 
Sbjct: 721 DGVETTQVISSLGDAYDMVLVGRDHDLESSVLYGLTDWSECPELGVIGDMLTSPDFHFSV 780

Query: 775 SVVVLQQYNPTLNLHPLVEEEESDDANEVPD 805
            VV  QQ +  L +         DD+ ++P+
Sbjct: 781 LVVHQQQGDDLLAM---------DDSYKLPN 802

High-affinity potassium transporter that plays a role in K(+) acquisition. May operate as a K(+)/H(+) symporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	813
356564692	813	PREDICTED: cation/H(+) antiporter 19-lik	0.982	0.982	0.717	0.0
356548002	813	PREDICTED: cation/H(+) antiporter 19-lik	0.985	0.985	0.709	0.0
225432244	802	PREDICTED: cation/H(+) antiporter 19-lik	0.966	0.980	0.718	0.0
356550850	813	PREDICTED: cation/H(+) antiporter 19-lik	0.977	0.977	0.701	0.0
297830382	800	predicted protein [Arabidopsis lyrata su	0.956	0.972	0.731	0.0
224107030	752	cation proton exchanger [Populus trichoc	0.915	0.989	0.740	0.0
145338637	800	cation/H(+) antiporter 19 [Arabidopsis t	0.961	0.977	0.720	0.0
224107014	758	cation proton exchanger [Populus trichoc	0.922	0.989	0.732	0.0
297736842	772	unnamed protein product [Vitis vinifera]	0.933	0.983	0.702	0.0
242090037	796	hypothetical protein SORBIDRAFT_09g00820	0.945	0.966	0.644	0.0

>gi|356564692|ref|XP_003550583.1| PREDICTED: cation/H(+) antiporter 19-like [Glycine max]

 Score = 1163 bits (3008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 587/818 (71%), Positives = 692/818 (84%), Gaps = 19/818 (2%)

Query: 1   MATQQHPPPGACPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQ 60
           MAT  +    +CPAPMKATSNG+FQ ENPLDYALPL+ILQICLVV FTRF+AFL +PLRQ
Sbjct: 2   MATSNN---ASCPAPMKATSNGAFQHENPLDYALPLLILQICLVVFFTRFIAFLCRPLRQ 58

Query: 61  PRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKS 120
           PRVIAEIIGG+LLGPSA+GR+E+FLNTVFPKKS+TVL+TL NIGLLFFLFLVGLELD+++
Sbjct: 59  PRVIAEIIGGILLGPSAIGRNEKFLNTVFPKKSITVLDTLGNIGLLFFLFLVGLELDMRA 118

Query: 121 ILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLA 180
           I RTG K+LGIAL GIT+PF LGIGTSF LR+TV KGA     LVFMGV+LSITAFPVLA
Sbjct: 119 IRRTGHKALGIALCGITVPFVLGIGTSFALRATVSKGAEPVSFLVFMGVALSITAFPVLA 178

Query: 181 RILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSS-LIAVWVLLSGAAFVV 239
           RILAELKLLTTD+GRIAMSAAAVNDVAAW+LLALAIA+S S+ S L+ +WVLLSG AFV+
Sbjct: 179 RILAELKLLTTDVGRIAMSAAAVNDVAAWILLALAIAISGSNGSPLVPLWVLLSGVAFVL 238

Query: 240 FAVFVIRPVLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIM 299
           FAVF IRP+L  MA RSPEGEPVKE+Y+CITL++VLA SFVTDTIGIHALFGAFV+G IM
Sbjct: 239 FAVFAIRPLLVAMANRSPEGEPVKEVYICITLTLVLACSFVTDTIGIHALFGAFVLGTIM 298

Query: 300 PKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKI 359
           PK+G F+GVLIEKIED+VSGLFLPL+F +SGLKTNVA+I G  SW +L+LVI NACFGKI
Sbjct: 299 PKDGSFSGVLIEKIEDLVSGLFLPLFFVSSGLKTNVASISGGLSWAMLVLVIFNACFGKI 358

Query: 360 VGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTT 419
           VGT+VV+  CKVP  E++ALGF+MNTKGLVELIVLNIGKDRKVLNDQAFAI VLMALFTT
Sbjct: 359 VGTIVVSLICKVPSHEAVALGFLMNTKGLVELIVLNIGKDRKVLNDQAFAICVLMALFTT 418

Query: 420 FITTPILMAIYKPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRG-R 478
           FITTPI+MA+YKPAR+G PYKH+TIQR+D +TE R+L CFH++RNIP+LINL+ESSRG R
Sbjct: 419 FITTPIVMAVYKPARRGAPYKHKTIQRRDPDTELRMLICFHTSRNIPTLINLIESSRGIR 478

Query: 479 KRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQLSSVT 538
           KRGKLC+YAMHL+ELSERSSAI MV KAR NG+PFW+KK+DD+D ++IAF+AY++LSSV 
Sbjct: 479 KRGKLCIYAMHLVELSERSSAITMVHKARRNGMPFWNKKQDDKDQMIIAFQAYEKLSSVN 538

Query: 539 VRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQH 598
           VRPMTAISAL+SIHEDIC SAHRK AA+I+LPFHKHQR+DG+MESLGH+FH++N+  L H
Sbjct: 539 VRPMTAISALNSIHEDICTSAHRKCAAMIILPFHKHQRVDGSMESLGHSFHVMNQLVLSH 598

Query: 599 APCSVGIFVDRGLGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVK 658
           APCSVGI VDRG GGT+QV AS+VSY VVVPFFGG DD EAL YGMRMAEHPGI L VVK
Sbjct: 599 APCSVGILVDRGFGGTSQVPASDVSYKVVVPFFGGRDDREALCYGMRMAEHPGILLNVVK 658

Query: 659 FVAPKGTSLTFGSDAPGVIS------IDLLRGD--NDQVGDDAIISDFKSIA-SKNQESI 709
           F+ P GTSL FG+   GV S       +++ G+  +D+  DD + S+F S   + NQES+
Sbjct: 659 FMPPPGTSLAFGAKLVGVSSNKDKKAFEVVGGNYYDDKQQDDQLWSEFLSACNNNNQESM 718

Query: 710 TLEERLVESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSE 769
             E++LV S  +I   LK MN+ NL LVGRM   APL+   S   C ELGPVG ++ASS+
Sbjct: 719 KHEQKLVASKGDIEAALKEMNRSNLILVGRMPSVAPLI---SRSDCPELGPVGSYMASSD 775

Query: 770 FSTTASVVVLQQYNPTLNLHPLVEEEESDDANEVPDTP 807
           FS   SV+V+QQYNP+ ++HPLV EE   D  ++PDTP
Sbjct: 776 FSNVTSVMVIQQYNPSTDIHPLVMEES--DYPDMPDTP 811

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548002|ref|XP_003542393.1| PREDICTED: cation/H(+) antiporter 19-like [Glycine max]

 Score = 1156 bits (2991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/817 (70%), Positives = 684/817 (83%), Gaps = 16/817 (1%)

Query: 1   MATQQHPPPGACPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQ 60
           MAT  +    +CPA MKATSNG+FQ ENPLDYALPL+ILQICLVV FTR +AFL +PLRQ
Sbjct: 1   MATANN---ASCPAFMKATSNGAFQHENPLDYALPLLILQICLVVVFTRVIAFLCRPLRQ 57

Query: 61  PRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKS 120
           PRVIAEIIGG+LLGPSA+GR+E+FL+TVFPKKS+TVL+TL N+GLLFFLFLVGLELD+++
Sbjct: 58  PRVIAEIIGGILLGPSAIGRNEKFLSTVFPKKSITVLDTLGNVGLLFFLFLVGLELDMRA 117

Query: 121 ILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLA 180
           I RTG K+L IAL GIT+PF LGIGTSF LR+TV KGA     LVFMGV+LSITAFPVLA
Sbjct: 118 IRRTGHKALAIALCGITVPFVLGIGTSFALRATVSKGAEPVSFLVFMGVALSITAFPVLA 177

Query: 181 RILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSS-LIAVWVLLSGAAFVV 239
           RILAELKLLTTD+GRIAMSAAAVNDVAAW+LLALAIA+S S+ S  + +WVLLSG AFV+
Sbjct: 178 RILAELKLLTTDVGRIAMSAAAVNDVAAWILLALAIAISGSNGSPFVPLWVLLSGVAFVI 237

Query: 240 FAVFVIRPVLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIM 299
           FAVF IRP+L  MA RSPEGEPVKE+Y+CITL++VLA SFVTDTIGIHALFGAFV+G IM
Sbjct: 238 FAVFAIRPLLVAMANRSPEGEPVKEVYICITLTLVLACSFVTDTIGIHALFGAFVIGTIM 297

Query: 300 PKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKI 359
           PKEG F+ V+IEKIED+VSGLFLPL+F +SGLKTNVATI G  SW +L+LVI NACFGKI
Sbjct: 298 PKEGSFSVVMIEKIEDLVSGLFLPLFFVSSGLKTNVATISGGLSWAMLVLVIFNACFGKI 357

Query: 360 VGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTT 419
           VGT+VV+ +CKVP +E++ALGF+MNTKGLVELIVLNIGKDRKVLNDQAFAI VLMALFTT
Sbjct: 358 VGTIVVSLTCKVPSQEAVALGFLMNTKGLVELIVLNIGKDRKVLNDQAFAICVLMALFTT 417

Query: 420 FITTPILMAIYKPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRG-R 478
           FITTPI+MA+YKPAR+G PYKHRTIQR+D +TE R+LACFH+TRNIP+LINL+ESSRG R
Sbjct: 418 FITTPIVMAVYKPARRGAPYKHRTIQRRDPDTELRMLACFHTTRNIPTLINLIESSRGIR 477

Query: 479 KRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQLSSVT 538
           KRGKLC+YAMHLMELSERSSAI MV KAR NG+PFW+KK DD+D ++IAF+AY++L SV 
Sbjct: 478 KRGKLCIYAMHLMELSERSSAITMVHKARKNGMPFWNKKPDDKDQMIIAFQAYEKLRSVN 537

Query: 539 VRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQH 598
           VRPMTAISAL+SIHEDIC SAH+KRAA+I+LPFHKHQR+DG+MESLGH+ H++N+  L H
Sbjct: 538 VRPMTAISALNSIHEDICTSAHQKRAAMIILPFHKHQRVDGSMESLGHSLHVMNQLVLSH 597

Query: 599 APCSVGIFVDRGLGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVK 658
           APCSVGI VDRGLGGT+QV AS+VSY VVVPFFGG DD EAL YGMRMAEHPGI L VVK
Sbjct: 598 APCSVGILVDRGLGGTSQVQASDVSYKVVVPFFGGRDDREALCYGMRMAEHPGILLNVVK 657

Query: 659 FVAPKGTSLTFGSDAPGVIS------IDLLRGD--NDQVGDDAIISDFKSIASKNQESIT 710
           FV P G SL FG+   G+ S      ++++ G   +D+  DD + S+F S  + NQES+ 
Sbjct: 658 FVPPPGASLAFGAKLVGMSSNKDKKAMEVVGGSYYDDKQQDDQLWSEFLSACNNNQESMK 717

Query: 711 LEERLVESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEF 770
            E++LV S  +I   LK MN+ NL LVGRM    PL+   S   C ELGPVG ++ASS+F
Sbjct: 718 YEQKLVASKGDIEAALKEMNRSNLILVGRMPSVGPLV---SRSDCPELGPVGSYMASSDF 774

Query: 771 STTASVVVLQQYNPTLNLHPLVEEEESDDANEVPDTP 807
           ST  SV+V+QQYNP+ ++HPLV EE        P+ P
Sbjct: 775 STVTSVMVIQQYNPSTDIHPLVMEEFDYPDKLEPNAP 811

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432244|ref|XP_002270854.1| PREDICTED: cation/H(+) antiporter 19-like [Vitis vinifera]

 Score = 1139 bits (2946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/804 (71%), Positives = 667/804 (82%), Gaps = 18/804 (2%)

Query: 12  CPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGV 71
           CPAPMKATSNGSFQG+NPLD+ALPL+ILQICLVV FTR LA +LKPLRQPRVIAEIIGG+
Sbjct: 10  CPAPMKATSNGSFQGDNPLDFALPLLILQICLVVVFTRTLALILKPLRQPRVIAEIIGGI 69

Query: 72  LLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGI 131
           LLGPSALGRS +FL+ VFP +SMTVL+T+ANIGLLFFLFLVGLELDI++I RTGK+SLGI
Sbjct: 70  LLGPSALGRSTKFLHRVFPARSMTVLDTVANIGLLFFLFLVGLELDIRAIRRTGKQSLGI 129

Query: 132 ALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTT 191
           A+ GIT PF LGIGTS VLRST+ KG + AP LVFMGVSLSITAFPVLARILAELKLLTT
Sbjct: 130 AVVGITFPFVLGIGTSVVLRSTISKGVDHAPFLVFMGVSLSITAFPVLARILAELKLLTT 189

Query: 192 DLGRIAMSAAAVNDVAAWVLLALAIALSSSSSS-LIAVWVLLSGAAFVVFAVFVIRPVLS 250
           D+GR+AMSAAAVNDVAAW+LLALAIALS  ++S L++VWVLL G AFV  A+  +RP L+
Sbjct: 190 DVGRMAMSAAAVNDVAAWILLALAIALSGDNTSPLVSVWVLLCGCAFVAAAILFLRPALA 249

Query: 251 LMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLI 310
            MARRS  GEPV ELY+CITLS+VLAA FVTDTIGIHALFGAFVVGI++PK+GPF  +LI
Sbjct: 250 FMARRSLGGEPVNELYICITLSLVLAAGFVTDTIGIHALFGAFVVGIVVPKDGPFGEILI 309

Query: 311 EKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCK 370
           EKIED+VSGLFLPLYF +SGLKTNVATI G  SWGLL+LVI NACFGKI+GTVVV+   K
Sbjct: 310 EKIEDLVSGLFLPLYFVSSGLKTNVATISGGQSWGLLVLVIFNACFGKILGTVVVSRIFK 369

Query: 371 VPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIY 430
           VP+RE++ LGF+MNTKGLVELIVLNIGKDRKVLNDQ FAILVLMALFTTFITTPI+ A+Y
Sbjct: 370 VPMREAVVLGFLMNTKGLVELIVLNIGKDRKVLNDQTFAILVLMALFTTFITTPIVTALY 429

Query: 431 KPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHL 490
           KPARK   Y HRT+QR+  ++EFRILACFHSTRNIP++INL+ESSRG +RG+LC+YAMHL
Sbjct: 430 KPARKIASYTHRTVQRRGPDSEFRILACFHSTRNIPTMINLIESSRGTRRGRLCVYAMHL 489

Query: 491 MELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQLSSVTVRPMTAISALSS 550
           MELSERSSAI+MV KAR NGLPFW+KKR  +D +VIAFEAYQQLSSV+VRPMTAIS L+S
Sbjct: 490 MELSERSSAISMVHKARRNGLPFWNKKRTHKDQMVIAFEAYQQLSSVSVRPMTAISPLNS 549

Query: 551 IHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVDRG 610
           IHEDIC SAH+K+ A+ILLPFHK+QRLDG MESLGH+FHLVN+R ++HAPCSVGI VDRG
Sbjct: 550 IHEDICTSAHQKQVAMILLPFHKYQRLDGVMESLGHSFHLVNQRVIRHAPCSVGILVDRG 609

Query: 611 LGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFG 670
           LGGT+QV AS VSYS+ +PFFGG DD EALAYG+RMAEHPGIKLTV+ FVAP G SL   
Sbjct: 610 LGGTSQVSASHVSYSIAIPFFGGRDDREALAYGVRMAEHPGIKLTVINFVAPPGKSLLDW 669

Query: 671 SDAPGVISIDLL------RGDNDQVGDDAIISDFKSIASKNQESITLEERLVESSQEIAG 724
           +   G  ++ +       + DNDQ+        F        ESI+ E+R+VE    I  
Sbjct: 670 NSGDGAATVQINEITQDGKEDNDQL--------FSEPNFTENESISYEKRVVEEKAGIVA 721

Query: 725 VLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQQYNP 784
            L SM   NLFLVGRM+  A L +      C ELGPVG FLASSEFSTTASV+V+QQYNP
Sbjct: 722 KLTSMTNTNLFLVGRMSAVAGLTERSD---CPELGPVGSFLASSEFSTTASVLVIQQYNP 778

Query: 785 TLNLHPLVEEEESDDANEVPDTPM 808
           T N   L EEE S+ ++   D P+
Sbjct: 779 TANFSALAEEEASELSDGPDDAPV 802

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550850|ref|XP_003543796.1| PREDICTED: cation/H(+) antiporter 19-like [Glycine max]

 Score = 1137 bits (2942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/811 (70%), Positives = 671/811 (82%), Gaps = 16/811 (1%)

Query: 8   PPGACPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEI 67
           P   CPAPMKATSNG+FQ ENPLDYALPL+ILQIC+VV FTRFLAF+ KPLRQPRVIAE+
Sbjct: 4   PDSKCPAPMKATSNGAFQHENPLDYALPLLILQICVVVVFTRFLAFICKPLRQPRVIAEV 63

Query: 68  IGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKK 127
           IGG+LLGPSA+GRSE+FLNT+FPK+S+TVLET+ANIGLLFFLFLVGLELD++SI +TG K
Sbjct: 64  IGGILLGPSAMGRSEKFLNTIFPKRSLTVLETVANIGLLFFLFLVGLELDLRSIRKTGHK 123

Query: 128 SLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELK 187
           +L IAL+GIT PF LGIGTS+ LR+T+ K AN    LVFMGV+LSITAFPVLARILAELK
Sbjct: 124 ALFIALSGITFPFILGIGTSYALRATISKNANPTSFLVFMGVALSITAFPVLARILAELK 183

Query: 188 LLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSS-LIAVWVLLSGAAFVVFAVFVIR 246
           LLTT++GRIAMSAAA+NDVAAW+LLALAIALS S++S L+++WV+L  A FV+FA+F I 
Sbjct: 184 LLTTNVGRIAMSAAAINDVAAWILLALAIALSGSNTSPLVSLWVILCAAGFVLFAMFAIS 243

Query: 247 PVLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFA 306
           P+L +MA+RSPEGEPV+E+Y+CIT+++VLA  F+TDTIGIHALFGAFVVGI+MPK+GPFA
Sbjct: 244 PLLGMMAKRSPEGEPVQEIYICITMTLVLACGFITDTIGIHALFGAFVVGIVMPKDGPFA 303

Query: 307 GVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVA 366
           G LIEKIED+V  LFLPLYF +SGLKT+VA+I GA SWG+L+LVI  ACFGKI+GT +V+
Sbjct: 304 GALIEKIEDLVMSLFLPLYFVSSGLKTDVASISGALSWGMLVLVIFTACFGKIIGTFLVS 363

Query: 367 WSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPIL 426
             CKVP RE+LALGF+MNTKGLVELIVLNIGKDRKVLNDQAFAI VLMALFTTFITTPI+
Sbjct: 364 LLCKVPFREALALGFLMNTKGLVELIVLNIGKDRKVLNDQAFAICVLMALFTTFITTPIV 423

Query: 427 MAIYKPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRG-RKRGKLCL 485
           MA+YKPAR G  Y H+T+QR D  TE R+LACFHSTRNIP+LINL+ESSRG +KR KLC+
Sbjct: 424 MAVYKPARTGSRYTHKTVQRNDPNTELRVLACFHSTRNIPTLINLIESSRGTKKRAKLCV 483

Query: 486 YAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQLSSVTVRPMTAI 545
           YAMHLMELSER SAI MV  ARNNG+PFW+KK D+RD +VIAF+AY  LSSV VRPMTAI
Sbjct: 484 YAMHLMELSERPSAITMVHTARNNGMPFWNKKHDNRDQVVIAFQAYGHLSSVNVRPMTAI 543

Query: 546 SALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGI 605
           SA S+IHEDIC SAH+KRAA+I LPFHKHQR DG MES+G++   +N   L HAPCSVGI
Sbjct: 544 SAFSNIHEDICTSAHQKRAAIIFLPFHKHQRFDGTMESVGNSLRAMNGLVLSHAPCSVGI 603

Query: 606 FVDRGLGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGT 665
            VDRGLGGT+QV AS+VSY VVV FFGG DD EALAYGMRMAEHPG+ +TVVKFV P G 
Sbjct: 604 LVDRGLGGTSQVQASDVSYKVVVGFFGGRDDREALAYGMRMAEHPGVSITVVKFVVPPGM 663

Query: 666 SLTFGSDAPGVIS------IDLLRG---DNDQVGDDAIISDFKSIASKNQESITLEERLV 716
           +L FG+   GV +      I +  G   D ++  D+   S+F  +  KN ESI  EERLV
Sbjct: 664 TLAFGAKLIGVTADKDRKVIKVAEGTTTDVEKQEDEHFWSEFLGVCCKNAESIMYEERLV 723

Query: 717 ESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASV 776
           ES ++I   ++ MNK NL LVGRM P  PL+DT     C ELGPVG +LASSEFST+ASV
Sbjct: 724 ESKEDILTTMREMNKSNLILVGRMPPVVPLVDTSD---CPELGPVGSYLASSEFSTSASV 780

Query: 777 VVLQQYNPTLNLHPLVEEEESDDANEVPDTP 807
           +V QQYNP  +++PLV   E  D   +PDTP
Sbjct: 781 IVFQQYNPKTDVYPLV--MEISDYLNMPDTP 809

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830382|ref|XP_002883073.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297328913|gb|EFH59332.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score = 1131 bits (2926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/790 (73%), Positives = 662/790 (83%), Gaps = 12/790 (1%)

Query: 10  GACPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIG 69
           G CP PMKATSNG+FQ E+PLD+ALPLIILQI LVV FTR LA+ LKPL+QPRVIAEIIG
Sbjct: 8   GQCPGPMKATSNGAFQNESPLDFALPLIILQIVLVVVFTRLLAYFLKPLKQPRVIAEIIG 67

Query: 70  GVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSL 129
           G+LLGPSALGRS+ +L+T+FPKKS+TVL+TLANIGLLFFLFLVGLELD  +I +TGKKSL
Sbjct: 68  GILLGPSALGRSKAYLDTIFPKKSLTVLDTLANIGLLFFLFLVGLELDFTAIRKTGKKSL 127

Query: 130 GIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLL 189
            IALAGI+LPF +G+GTSFVL +T+ KG NQ P +VFMGV+LSITAFPVLARILAELKLL
Sbjct: 128 LIALAGISLPFVVGVGTSFVLSATISKGVNQLPFIVFMGVALSITAFPVLARILAELKLL 187

Query: 190 TTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSS-LIAVWVLLSGAAFVVFAVFVIRPV 248
           TTD+GRIAMSAA VNDVAAW+LLALAIALS   +S L++VWVLL G+ FV+FAV  I+P+
Sbjct: 188 TTDIGRIAMSAAGVNDVAAWILLALAIALSGDGTSPLVSVWVLLCGSGFVIFAVVAIKPL 247

Query: 249 LSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGV 308
           L+ MARR PEGEPVKELYVC+TL++VLAASFVTDTIGIHALFGAFVVGI+ PKEGPF  +
Sbjct: 248 LAYMARRCPEGEPVKELYVCVTLTVVLAASFVTDTIGIHALFGAFVVGIVAPKEGPFCRI 307

Query: 309 LIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWS 368
           L EKIED+VSGL LPLYFAASGLKT+V TIRGA SWGLL+LVIL  CFGKIVGTV  +  
Sbjct: 308 LTEKIEDLVSGLLLPLYFAASGLKTDVTTIRGAQSWGLLVLVILTTCFGKIVGTVGASML 367

Query: 369 CKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMA 428
           CKVP RE++ALGF+MNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPI+M 
Sbjct: 368 CKVPFREAMALGFLMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPIVML 427

Query: 429 IYKPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRGR-KRGKLCLYA 487
           IYKPARKG PYKHRTIQRKD ++E RILACFHSTRNIP+LINL+ESSRG  K+G+LC+YA
Sbjct: 428 IYKPARKGAPYKHRTIQRKDHDSELRILACFHSTRNIPTLINLIESSRGTGKKGRLCVYA 487

Query: 488 MHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQLSSVTVRPMTAISA 547
           MHLMELSERSSAIAMV KARNNGLP W+K     D +VIAFEAYQ L +V VRPMTAIS 
Sbjct: 488 MHLMELSERSSAIAMVHKARNNGLPIWNKIERSTDQMVIAFEAYQHLRAVAVRPMTAISG 547

Query: 548 LSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFV 607
           LSSIHEDIC SAH+KR A+ILLPFHKHQR+DGAMES+GH FH VN+R LQ APCSVGI V
Sbjct: 548 LSSIHEDICTSAHQKRVAMILLPFHKHQRVDGAMESIGHGFHEVNQRVLQRAPCSVGILV 607

Query: 608 DRGLGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSL 667
           DRGLGGT+QVVASEV+Y VVVPFFGGLDD EALAYGM+M EHPGI LTV KFVA +GT  
Sbjct: 608 DRGLGGTSQVVASEVAYKVVVPFFGGLDDREALAYGMKMVEHPGITLTVHKFVAARGTLK 667

Query: 668 TFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASKNQESITLEERLVESSQEIAGVLK 727
            F               D + V +  +++D      +  ES+  EER+VES ++I   LK
Sbjct: 668 RFEKSEHDEKEKTEKETDEEFVRE--LMND-----PRGNESLAYEERVVESKEDIIATLK 720

Query: 728 SMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQQYNPTLN 787
           SM+KCNLF+VGR A  A L+++     C ELGPVG  L+SSEFSTTASV+V+Q Y+P  +
Sbjct: 721 SMSKCNLFVVGRNAAVASLVNSTD---CPELGPVGRLLSSSEFSTTASVLVVQGYDPAAD 777

Query: 788 LHPLVEEEES 797
             PLVEE+ES
Sbjct: 778 TRPLVEEDES 787

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107030|ref|XP_002314350.1| cation proton exchanger [Populus trichocarpa] gi|222863390|gb|EEF00521.1| cation proton exchanger [Populus trichocarpa]

 Score = 1123 bits (2904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/776 (74%), Positives = 663/776 (85%), Gaps = 32/776 (4%)

Query: 16  MKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGP 75
           MKATSNG+FQ ENPLDYALPL+ILQICLVVAFTR LAFLLKPLRQPRVIAEIIGG+LLGP
Sbjct: 1   MKATSNGAFQHENPLDYALPLLILQICLVVAFTRTLAFLLKPLRQPRVIAEIIGGILLGP 60

Query: 76  SALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAG 135
           SALGRSERFL+TVFP KSMTVL+T+ANIGLLFFLFLVGLELDI+SI RTGKKSL IA AG
Sbjct: 61  SALGRSERFLHTVFPPKSMTVLDTVANIGLLFFLFLVGLELDIRSIRRTGKKSLAIAGAG 120

Query: 136 ITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGR 195
           ITLPF LGIGTSFVLRST+ KG+  AP LVFMGVSLSITAFPVLARILAELKLLTTD+GR
Sbjct: 121 ITLPFLLGIGTSFVLRSTISKGSAHAPFLVFMGVSLSITAFPVLARILAELKLLTTDVGR 180

Query: 196 IAMSAAAVNDVAAWVLLALAIALSSSSSS-LIAVWVLLSGAAFVVFAVFVIRPVLSLMAR 254
           IAMSAAAVNDV AW+LLALAIALS S++S LI++WVLL G  FVVF+V+VIRP+L LMAR
Sbjct: 181 IAMSAAAVNDVVAWILLALAIALSGSNTSPLISLWVLLCGVGFVVFSVYVIRPLLELMAR 240

Query: 255 RSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIE 314
           RSP+GEPVKE+Y+CITLS+VLA+SFVTD+IGIHALFGAFVVGI++PK+ PF GVLIEKIE
Sbjct: 241 RSPDGEPVKEIYICITLSLVLASSFVTDSIGIHALFGAFVVGILVPKDSPFPGVLIEKIE 300

Query: 315 DMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVA-WSCKVPL 373
           D+V+GLFLPLYFA+SGLKTNVATI GA SWGLL+LVI  ACFGKI+GT+ V+    KVP 
Sbjct: 301 DLVAGLFLPLYFASSGLKTNVATISGAQSWGLLVLVIATACFGKIIGTMFVSRMFFKVPF 360

Query: 374 RESLALGFIMNTKGLVELIVLNIGKDRK----VLNDQAFAILVLMALFTTFITTPILMAI 429
           RE+ ALGF+MNTKGLVELIVLNIGKDRK    VLNDQ FA+LVLMALFTTFITTPI+MA+
Sbjct: 361 REAAALGFLMNTKGLVELIVLNIGKDRKASTHVLNDQTFAVLVLMALFTTFITTPIVMAV 420

Query: 430 YKPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRG-RKRGKLCLYAM 488
           YKPAR+  PYK+RT++RKD +TE R+LACFHS+RNIP++INLVE SRG RKRG+LC+YAM
Sbjct: 421 YKPARRVAPYKNRTVKRKDLDTELRLLACFHSSRNIPTMINLVECSRGTRKRGRLCVYAM 480

Query: 489 HLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQLSSVTVRPMTAISAL 548
           HLMELSERSSAI+MV KAR NGLPFW+KKRDDRD +VIAFEAYQQLSSVT+RPMTAISAL
Sbjct: 481 HLMELSERSSAISMVHKARKNGLPFWNKKRDDRDQMVIAFEAYQQLSSVTIRPMTAISAL 540

Query: 549 SSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVD 608
           ++I+EDIC SAH+KRAA+ILLPFHKHQR+DG++ESLGH+   VN+R L+H+PCS GI +D
Sbjct: 541 NTIYEDICTSAHQKRAAMILLPFHKHQRVDGSLESLGHSLQEVNQRVLRHSPCSAGILID 600

Query: 609 RGLGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLT 668
           RG GGTTQV AS+VSY + VPFFGG DD EALAYG+RMAEHPGI LTV+KF         
Sbjct: 601 RGFGGTTQVSASDVSYKIAVPFFGGSDDMEALAYGIRMAEHPGIMLTVLKF--------- 651

Query: 669 FGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASKN-QESITLEERLVESSQEIAGVLK 727
             +D          +  N +   +   S+F  +A+K  Q+S+T EER+VES  ++   LK
Sbjct: 652 --ND----------KNSNSEADSEIFFSEFVQLAAKKLQDSVTHEERVVESKADVVAALK 699

Query: 728 SMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQQYN 783
           SM+K NLFLVGRM P APL+ +  A    ELGPVG FLASS FS TASV+V+Q YN
Sbjct: 700 SMSKSNLFLVGRMPPIAPLLISTDAP---ELGPVGSFLASSNFSNTASVLVIQHYN 752

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145338637|ref|NP_188390.2| cation/H(+) antiporter 19 [Arabidopsis thaliana] gi|75311599|sp|Q9LUN4.1|CHX19_ARATH RecName: Full=Cation/H(+) antiporter 19; AltName: Full=Protein CATION/H+ EXCHANGER 19; Short=AtCHX19 gi|9294151|dbj|BAB02053.1| Na+/H+ exchangeing protein-like [Arabidopsis thaliana] gi|61658327|gb|AAX49547.1| cation/H+ exchanger [Arabidopsis thaliana] gi|332642462|gb|AEE75983.1| cation/H(+) antiporter 19 [Arabidopsis thaliana]

 Score = 1120 bits (2897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/794 (72%), Positives = 658/794 (82%), Gaps = 12/794 (1%)

Query: 10  GACPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIG 69
           G CP PMKATSNG+FQ E+PLD+ALPLIILQI LVV FTR LA+ LKPL+QPRVIAEIIG
Sbjct: 8   GQCPGPMKATSNGAFQNESPLDFALPLIILQIVLVVVFTRLLAYFLKPLKQPRVIAEIIG 67

Query: 70  GVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSL 129
           G+LLGPSALGRS+ +L+T+FPKKS+TVL+TLANIGLLFFLFLVGLELD  +I +TGKKSL
Sbjct: 68  GILLGPSALGRSKAYLDTIFPKKSLTVLDTLANIGLLFFLFLVGLELDFAAIKKTGKKSL 127

Query: 130 GIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLL 189
            IA+AGI+LPF +G+GTSFVL +T+ KG +Q P +VFMGV+LSITAFPVLARILAELKLL
Sbjct: 128 LIAIAGISLPFIVGVGTSFVLSATISKGVDQLPFIVFMGVALSITAFPVLARILAELKLL 187

Query: 190 TTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSS-LIAVWVLLSGAAFVVFAVFVIRPV 248
           TTD+GR+AMSAA VNDVAAW+LLALAIALS   +S L++VWVLL G  FV+FAV  I+P+
Sbjct: 188 TTDIGRMAMSAAGVNDVAAWILLALAIALSGDGTSPLVSVWVLLCGTGFVIFAVVAIKPL 247

Query: 249 LSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGV 308
           L+ MARR PEGEPVKELYVC+TL++VLAASFVTDTIGIHALFGAFVVGI+ PKEGPF  +
Sbjct: 248 LAYMARRCPEGEPVKELYVCVTLTVVLAASFVTDTIGIHALFGAFVVGIVAPKEGPFCRI 307

Query: 309 LIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWS 368
           L EKIED+VSGL LPLYFAASGLKT+V TIRGA SWGLL+LVIL  CFGKIVGTV  +  
Sbjct: 308 LTEKIEDLVSGLLLPLYFAASGLKTDVTTIRGAQSWGLLVLVILTTCFGKIVGTVGSSML 367

Query: 369 CKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMA 428
           CKVP RE++ LGF+MNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPI+M 
Sbjct: 368 CKVPFREAVTLGFLMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPIVML 427

Query: 429 IYKPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRGR-KRGKLCLYA 487
           IYKPARKG PYKHRTIQRKD ++E RILACFHSTRNIP+LINL+ESSRG  K+G+LC+YA
Sbjct: 428 IYKPARKGAPYKHRTIQRKDHDSELRILACFHSTRNIPTLINLIESSRGTGKKGRLCVYA 487

Query: 488 MHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQLSSVTVRPMTAISA 547
           MHLMELSERSSAIAMV KARNNGLP W+K     D +VIAFEAYQ L +V VRPMTAIS 
Sbjct: 488 MHLMELSERSSAIAMVHKARNNGLPIWNKIERSTDQMVIAFEAYQHLRAVAVRPMTAISG 547

Query: 548 LSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFV 607
           LSSIHEDIC SAH+KR A+ILLPFHKHQR+DGAMES+GH FH VN+R LQ APCSVGI V
Sbjct: 548 LSSIHEDICTSAHQKRVAMILLPFHKHQRMDGAMESIGHRFHEVNQRVLQRAPCSVGILV 607

Query: 608 DRGLGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSL 667
           DRGLGGT+QVVASEV+Y VV+PFFGGLDD EALAYGM+M EHPGI LTV KFVA +GT  
Sbjct: 608 DRGLGGTSQVVASEVAYKVVIPFFGGLDDREALAYGMKMVEHPGITLTVYKFVAARGTLK 667

Query: 668 TFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASKNQESITLEERLVESSQEIAGVLK 727
            F               D + V +  +++D      +  ES+  EER+VES  +I   LK
Sbjct: 668 RFEKSEHDEKEKKEKETDEEFVRE--LMND-----PRGNESLAYEERVVESKDDIIATLK 720

Query: 728 SMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQQYNPTLN 787
           SM+KCNLF+VGR A  A L+ +     C ELGPVG  L+SSEFSTTASV+V+Q Y+P  +
Sbjct: 721 SMSKCNLFVVGRNAAVASLVKSTD---CPELGPVGRLLSSSEFSTTASVLVVQGYDPAAD 777

Query: 788 LHPLVEEEESDDAN 801
             PLVEE+   D +
Sbjct: 778 TRPLVEEDAEYDQS 791

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107014|ref|XP_002314344.1| cation proton exchanger [Populus trichocarpa] gi|222863384|gb|EEF00515.1| cation proton exchanger [Populus trichocarpa]

 Score = 1109 bits (2869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/780 (73%), Positives = 657/780 (84%), Gaps = 30/780 (3%)

Query: 16  MKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGP 75
           MKATSNG+FQ E+PLDYALPL+ILQICLVVAFTR LAFLLKPLRQPRVIAEIIGG+LLGP
Sbjct: 1   MKATSNGAFQHESPLDYALPLLILQICLVVAFTRTLAFLLKPLRQPRVIAEIIGGILLGP 60

Query: 76  SALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAG 135
           SALGRSERFL+TVFP KSMTVL+T+ANIGLLFFLFLVGLELDI+SI RTGKKSL IA AG
Sbjct: 61  SALGRSERFLHTVFPPKSMTVLDTVANIGLLFFLFLVGLELDIRSIRRTGKKSLAIAGAG 120

Query: 136 ITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGR 195
           ITLPF LGIGTSFVLRST+ KG+  AP LVFMGVSLSITAFPVLARILAELKLLTTD+GR
Sbjct: 121 ITLPFLLGIGTSFVLRSTISKGSAHAPFLVFMGVSLSITAFPVLARILAELKLLTTDVGR 180

Query: 196 IAMSAAAVNDVAAWVLLALAIALSSSSSS-LIAVWVLLSGAAFVVFAVFVIRPVLSLMAR 254
           IAMSAAAVNDV AW+LLALAIALS S++S LI++WVLL G  FVVF+V+VIRP+L LMAR
Sbjct: 181 IAMSAAAVNDVVAWILLALAIALSGSNTSPLISLWVLLCGVGFVVFSVYVIRPLLELMAR 240

Query: 255 RSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIE 314
           RSP+GEPVKE+Y+CITLS+VLA+SFVTD+IGIHALFGAFVVGI++PK+ PF GVLIEKIE
Sbjct: 241 RSPDGEPVKEIYICITLSLVLASSFVTDSIGIHALFGAFVVGILVPKDSPFPGVLIEKIE 300

Query: 315 DMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVA-WSCKVPL 373
           D+V+GLFLPLYFA+SGLKTNVATI GA SWGLL+LVI  ACFGKI+GT+ V+    KVP 
Sbjct: 301 DLVAGLFLPLYFASSGLKTNVATISGAQSWGLLVLVIATACFGKIIGTMFVSRMFFKVPF 360

Query: 374 RESLALGFIMNTKGLVELIVLNIGKDRK----VLNDQAFAILVLMALFTTFITTPILMAI 429
           RE+ ALGF+MNTKGLVELIVLNIGKDRK    VLNDQ F++LVLMALFTTFITTPI+MA+
Sbjct: 361 REAAALGFLMNTKGLVELIVLNIGKDRKASTHVLNDQTFSVLVLMALFTTFITTPIVMAV 420

Query: 430 YKPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRG-RKRGKLCLYAM 488
           YKPAR+  PYK+RT++RKD +TE R+LACFHS+RNIP++INLVE SRG RKRG+LC+YAM
Sbjct: 421 YKPARRVAPYKNRTVKRKDLDTELRLLACFHSSRNIPTMINLVECSRGTRKRGRLCVYAM 480

Query: 489 HLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQLSSVTVRPMTAISAL 548
           HLMELSERSSAI+MV KAR NGLPFW+KKRDDRD +VIAFEAYQQLSSVT+RPMTAISAL
Sbjct: 481 HLMELSERSSAISMVHKARKNGLPFWNKKRDDRDQMVIAFEAYQQLSSVTIRPMTAISAL 540

Query: 549 SSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVD 608
           ++I+EDIC SAH+KRAA+ILLPFHKHQR+DG++ESLGH+   VN+R L+H+PCS GI +D
Sbjct: 541 NTIYEDICTSAHQKRAAMILLPFHKHQRVDGSLESLGHSLQEVNQRVLRHSPCSAGILID 600

Query: 609 RGLGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKG-TSL 667
           RG GGTTQV AS+VSY +VVPFFGG DD EALAYG+RMAEHPGI LTV+KFV   G T L
Sbjct: 601 RGFGGTTQVSASDVSYKIVVPFFGGSDDMEALAYGIRMAEHPGIMLTVLKFVPASGKTLL 660

Query: 668 TFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASKNQESITLEERLVESSQEIAGVLK 727
           T       VI ++  +  N +   +   S+F                   S  ++   LK
Sbjct: 661 TLEGHDTNVIRVENDKNSNSEADSEIFFSEF-------------------SKADVVAALK 701

Query: 728 SMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQQYNPTLN 787
           SM+K NLFLVGRM P APL+ +       ELGPVG FLASS FS TASV+V+Q YNP  N
Sbjct: 702 SMSKSNLFLVGRMPPIAPLLISTDTP---ELGPVGSFLASSNFSNTASVLVIQHYNPNGN 758

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736842|emb|CBI26043.3| unnamed protein product [Vitis vinifera]

 Score = 1089 bits (2816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 565/804 (70%), Positives = 650/804 (80%), Gaps = 45/804 (5%)

Query: 12  CPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGV 71
           CPAPMKATSNGSFQG+NPLD+ALPL+ILQICLVV FTR LA +LKPLRQPRVIAEIIGG+
Sbjct: 10  CPAPMKATSNGSFQGDNPLDFALPLLILQICLVVVFTRTLALILKPLRQPRVIAEIIGGI 69

Query: 72  LLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGI 131
           LLGPSALGRS +FL+ VFP +SMTVL+T+ANIGLLFFLFLVGLELDI++I RTGK+SLGI
Sbjct: 70  LLGPSALGRSTKFLHRVFPARSMTVLDTVANIGLLFFLFLVGLELDIRAIRRTGKQSLGI 129

Query: 132 ALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTT 191
           A+ GIT PF LGIGTS VLRST+ KG + AP LVFMGVSLSITAFPVLARILAELKLLTT
Sbjct: 130 AVVGITFPFVLGIGTSVVLRSTISKGVDHAPFLVFMGVSLSITAFPVLARILAELKLLTT 189

Query: 192 DLGRIAMSAAAVNDVAAWVLLALAIALSSSSSS-LIAVWVLLSGAAFVVFAVFVIRPVLS 250
           D+GR+AMSAAAVNDVAAW+LLALAIALS  ++S L++VWVLL G AFV  A+  +RP L+
Sbjct: 190 DVGRMAMSAAAVNDVAAWILLALAIALSGDNTSPLVSVWVLLCGCAFVAAAILFLRPALA 249

Query: 251 LMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLI 310
            MARRS  GEPV ELY+CITLS+VLAA FVTDTIGIHALFGAFVVGI++PK+GPF  +LI
Sbjct: 250 FMARRSLGGEPVNELYICITLSLVLAAGFVTDTIGIHALFGAFVVGIVVPKDGPFGEILI 309

Query: 311 EKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCK 370
           EKIED+VSGLFLPLYF +SGLKTNVATI G  SWGLL+LVI NACFGKI+GTVVV+   K
Sbjct: 310 EKIEDLVSGLFLPLYFVSSGLKTNVATISGGQSWGLLVLVIFNACFGKILGTVVVSRIFK 369

Query: 371 VPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIY 430
           VP+RE++ LGF+MNTKGLVELIVLNIGKDRKVLNDQ FAILVLMALFTTFITTPI+ A+Y
Sbjct: 370 VPMREAVVLGFLMNTKGLVELIVLNIGKDRKVLNDQTFAILVLMALFTTFITTPIVTALY 429

Query: 431 KPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHL 490
           KPARK   Y HRT+QR+  ++EFRILACFHSTRNIP++INL+ESSRG +RG+LC+YAMHL
Sbjct: 430 KPARKIASYTHRTVQRRGPDSEFRILACFHSTRNIPTMINLIESSRGTRRGRLCVYAMHL 489

Query: 491 MELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQLSSVTVRPMTAISALSS 550
           MELSERSSAI+M                     +VIAFEAYQQLSSV+VRPMTAIS L+S
Sbjct: 490 MELSERSSAISM---------------------MVIAFEAYQQLSSVSVRPMTAISPLNS 528

Query: 551 IHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVDRG 610
           IHEDIC SAH+K+ A+ILLPFHK+QRLDG MESLGH+FHLVN+R ++HAPCSVGI VDRG
Sbjct: 529 IHEDICTSAHQKQVAMILLPFHKYQRLDGVMESLGHSFHLVNQRVIRHAPCSVGILVDRG 588

Query: 611 LGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFG 670
           LGGT+QV AS VSYS+ +PFFGG DD EALAYG+RMAEHPGIKLTV+ FVAP G SL   
Sbjct: 589 LGGTSQVSASHVSYSIAIPFFGGRDDREALAYGVRMAEHPGIKLTVINFVAPPGKSL--- 645

Query: 671 SDAPGVISIDLLRG-DNDQVGDDAIISDFKSIASKNQESITLEERLVESSQEIAGVLKSM 729
                   +D   G DNDQ+        F        ESI+ E+R+VE    I   L SM
Sbjct: 646 --------LDWNSGDDNDQL--------FSEPNFTENESISYEKRVVEEKAGIVAKLTSM 689

Query: 730 NKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQQYNPTLNLH 789
              NLFLVGRM+  A L +      C ELGPVG FLASSEFSTTASV+V+QQYNPT N  
Sbjct: 690 TNTNLFLVGRMSAVAGLTERSD---CPELGPVGSFLASSEFSTTASVLVIQQYNPTANFS 746

Query: 790 PLVEEEESDDANEVPDTPMGERAQ 813
            L EEE S+ ++   D P+  ++ 
Sbjct: 747 ALAEEEASELSDGPDDAPVTRQSD 770

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242090037|ref|XP_002440851.1| hypothetical protein SORBIDRAFT_09g008200 [Sorghum bicolor] gi|241946136|gb|EES19281.1| hypothetical protein SORBIDRAFT_09g008200 [Sorghum bicolor]

 Score = 1046 bits (2706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/796 (64%), Positives = 633/796 (79%), Gaps = 27/796 (3%)

Query: 15  PMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLG 74
           PMKATS+G FQGENPL  ALPL ILQIC+VV  TR LAF+L+PLRQPRV+AEIIGG+LLG
Sbjct: 11  PMKATSDGVFQGENPLHSALPLAILQICIVVVLTRVLAFILRPLRQPRVVAEIIGGILLG 70

Query: 75  PSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALA 134
           PSA+GRS  FLNTVFPK+S+TVL+TLANIGLL+FLFLVGLELD+++I RTG  +L IA+A
Sbjct: 71  PSAVGRSTAFLNTVFPKQSLTVLDTLANIGLLYFLFLVGLELDLRAIRRTGSTALVIAVA 130

Query: 135 GITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLG 194
           GI+LPF +GIGTSFVL+ TV +G    P LVFMGV+LSITAFPVLARILAELKLLTTD+G
Sbjct: 131 GISLPFIMGIGTSFVLQHTVARGVPTGPFLVFMGVALSITAFPVLARILAELKLLTTDIG 190

Query: 195 RIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRPVLSLMAR 254
           R+AMSAAAVNDV AW+LLALAIALS S S L+++WVLL+GA FV+ A  +IRPVL+ MAR
Sbjct: 191 RMAMSAAAVNDVVAWILLALAIALSGSGSPLVSLWVLLAGAGFVLAAFLLIRPVLTWMAR 250

Query: 255 RSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIE 314
           RSPEGEPVKELY+C TL++VLAA F TDTIGIHALFGAF+VGI++PK+GPFAGVL+EK+E
Sbjct: 251 RSPEGEPVKELYICATLAIVLAAGFATDTIGIHALFGAFIVGIVVPKDGPFAGVLLEKVE 310

Query: 315 DMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLR 374
           D++SGLFLPLYF +SGLKTNV TI+G  SW LL+LV+  AC GKI GTV+ +   +VP R
Sbjct: 311 DLISGLFLPLYFVSSGLKTNVMTIKGGDSWALLVLVVATACIGKIGGTVIASLIVRVPFR 370

Query: 375 ESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIYKPAR 434
           E+L LGF+MNTKGLVELIVLNIGKDR VLND+ FAILVLMAL TTFITTP++MAIYKPAR
Sbjct: 371 EALTLGFLMNTKGLVELIVLNIGKDRHVLNDETFAILVLMALITTFITTPVVMAIYKPAR 430

Query: 435 KGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELS 494
           +G PYK+R ++R +   EFR++ACFHSTRNIP++INL+ESSRG ++  + +YAMHL+ELS
Sbjct: 431 RGPPYKNRAVERANPHDEFRMMACFHSTRNIPTIINLMESSRGTRKRGITVYAMHLVELS 490

Query: 495 ERSSAIAMVQKARNNGLPFWDKKRD---DRDYIVIAFEAYQQLSSVTVRPMTAISALSSI 551
           ERSSAI+MV KAR NG+PFW+K+R+   D D +V+AFE YQQLS V++R MTAIS L +I
Sbjct: 491 ERSSAISMVHKARRNGMPFWNKRRNGDGDGDQLVVAFETYQQLSRVSIRAMTAISDLHTI 550

Query: 552 HEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVDRGL 611
           HED+  SAH+KRAALI+LPFHK  ++DG MESLG  +  +N+R L HAPCSVGI VDRGL
Sbjct: 551 HEDVVTSAHQKRAALIVLPFHKLHQMDGHMESLGDQYQHINQRVLHHAPCSVGILVDRGL 610

Query: 612 GGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGS 671
           GG  QV AS+VSY++VV FFGG DD EALAY MRM EHPGI L V++F            
Sbjct: 611 GGAAQVAASDVSYTIVVIFFGGRDDREALAYAMRMVEHPGIGLHVLRFC----------- 659

Query: 672 DAPGVISIDLLRGDNDQVGDDAIISDFKSIASKNQESITLEERLVESSQEIAGVLKSMNK 731
                    L++  +  V DDA + DF++  +   +S+  E++     +E+   +K++  
Sbjct: 660 ---------LVQSSSTDVDDDAFLEDFRTKVANGNDSVRYEDKPAGGKEEVVEAIKAIGP 710

Query: 732 CNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQQYNPTLNLHPL 791
           CNLFLVG+  P  PL+D  +   C ELGP+G +LA  EFST ASV+V++QY+PT   + L
Sbjct: 711 CNLFLVGQGTPCMPLIDWSTD--CPELGPLGTYLALPEFSTVASVLVMKQYDPTAKHYDL 768

Query: 792 VEEEESDDANEVPDTP 807
           V EE +D A +V DTP
Sbjct: 769 V-EEVADIAVDV-DTP 782

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	813
TAIR|locus:2090462	800	CHX19 "cation/H+ exchanger 19"	0.966	0.982	0.652	1.3e-265
TAIR|locus:2160457	810	CHX18 "cation/H+ exchanger 18"	0.942	0.945	0.564	1.7e-231
TAIR|locus:2128484	820	CHX17 "cation/H+ exchanger 17"	0.945	0.937	0.551	1.6e-219
TAIR|locus:2024578	811	CHX16 "cation/H+ exchanger 16"	0.933	0.935	0.494	3.3e-189
TAIR|locus:2054152	821	CHX15 "cation/hydrogen exchang	0.955	0.946	0.447	1.2e-177
TAIR|locus:2084370	842	CHX20 "cation/H+ exchanger 20"	0.435	0.420	0.586	2.1e-154
TAIR|locus:2031968	867	CHX23 "cation/H+ exchanger 23"	0.648	0.607	0.349	1.8e-101
TAIR|locus:2007392	829	CHX14 "cation/hydrogen exchang	0.633	0.621	0.308	1.6e-92
TAIR|locus:2060827	831	ATCHX13 [Arabidopsis thaliana	0.655	0.641	0.295	5e-87
TAIR|locus:2083830	801	chx28 "cation/hydrogen exchang	0.649	0.659	0.298	1.1e-66

TAIR|locus:2090462 CHX19 "cation/H+ exchanger 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 2555 (904.5 bits), Expect = 1.3e-265, P = 1.3e-265
 Identities = 522/800 (65%), Positives = 605/800 (75%)

Query:    10 GACPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIG 69
             G CP PMKATSNG+FQ E+PLD+ALPLIILQI LVV FTR LA+ LKPL+QPRVIAEIIG
Sbjct:     8 GQCPGPMKATSNGAFQNESPLDFALPLIILQIVLVVVFTRLLAYFLKPLKQPRVIAEIIG 67

Query:    70 GVLLGPSALGRSERFLNTVFPKKSMTVLETLANIXXXXXXXXXXXXXDIKSILRTGKKSL 129
             G+LLGPSALGRS+ +L+T+FPKKS+TVL+TLANI             D  +I +TGKKSL
Sbjct:    68 GILLGPSALGRSKAYLDTIFPKKSLTVLDTLANIGLLFFLFLVGLELDFAAIKKTGKKSL 127

Query:   130 GIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLL 189
              IA+AGI+LPF +G+GTSFVL +T+ KG +Q P +VFMGV+LSITAFPVLARILAELKLL
Sbjct:   128 LIAIAGISLPFIVGVGTSFVLSATISKGVDQLPFIVFMGVALSITAFPVLARILAELKLL 187

Query:   190 TTDLGRIAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GXXXXXXXXXXIRPV 248
             TTD+GR+AM                                    G          I+P+
Sbjct:   188 TTDIGRMAMSAAGVNDVAAWILLALAIALSGDGTSPLVSVWVLLCGTGFVIFAVVAIKPL 247

Query:   249 LSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGV 308
             L+ MARR PEGEPVKELYVC+TL++VLAASFVTDTIGIHALFGAFVVGI+ PKEGPF  +
Sbjct:   248 LAYMARRCPEGEPVKELYVCVTLTVVLAASFVTDTIGIHALFGAFVVGIVAPKEGPFCRI 307

Query:   309 LIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWS 368
             L EKIED+VSGL LPLYFAASGLKT+V TIRGA SWGLL+LVIL  CFGKIVGTV  +  
Sbjct:   308 LTEKIEDLVSGLLLPLYFAASGLKTDVTTIRGAQSWGLLVLVILTTCFGKIVGTVGSSML 367

Query:   369 CKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMA 428
             CKVP RE++ LGF+MNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPI+M 
Sbjct:   368 CKVPFREAVTLGFLMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPIVML 427

Query:   429 IYKPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRGR-KRGKLCLYA 487
             IYKPARKG PYKHRTIQRKD ++E RILACFHSTRNIP+LINL+ESSRG  K+G+LC+YA
Sbjct:   428 IYKPARKGAPYKHRTIQRKDHDSELRILACFHSTRNIPTLINLIESSRGTGKKGRLCVYA 487

Query:   488 MHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQLSSVTVRPMTAISA 547
             MHLMELSERSSAIAMV KARNNGLP W+K     D +VIAFEAYQ L +V VRPMTAIS 
Sbjct:   488 MHLMELSERSSAIAMVHKARNNGLPIWNKIERSTDQMVIAFEAYQHLRAVAVRPMTAISG 547

Query:   548 LSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFV 607
             LSSIHEDIC SAH+KR A+ILLPFHKHQR+DGAMES+GH FH VN+R LQ APCSVGI V
Sbjct:   548 LSSIHEDICTSAHQKRVAMILLPFHKHQRMDGAMESIGHRFHEVNQRVLQRAPCSVGILV 607

Query:   608 DRGLGGTTQXXXXXXXXXXXXPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSL 667
             DRGLGGT+Q            PFFGGLDD EALAYGM+M EHPGI LTV KFVA +GT  
Sbjct:   608 DRGLGGTSQVVASEVAYKVVIPFFGGLDDREALAYGMKMVEHPGITLTVYKFVAARGTLK 667

Query:   668 TFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASKNQESITLEERLVESSQEIAGVLK 727
              F             +   ++  D+  + +  +    N ES+  EER+VES  +I   LK
Sbjct:   668 RFEKSEHDE------KEKKEKETDEEFVRELMNDPRGN-ESLAYEERVVESKDDIIATLK 720

Query:   728 SMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQQYNPTLN 787
             SM+KCNLF+VGR A  A L+  KS + C ELGPVG  L+SSEFSTTASV+V+Q Y+P  +
Sbjct:   721 SMSKCNLFVVGRNAAVASLV--KSTD-CPELGPVGRLLSSSEFSTTASVLVVQGYDPAAD 777

Query:   788 LHPLVEEE-ESDDAN-EVPD 805
               PLVEE+ E D ++ ++ D
Sbjct:   778 TRPLVEEDAEYDQSSRDISD 797

GO:0006812 "cation transport" evidence=IEA;IC

GO:0009507 "chloroplast" evidence=ISM

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0005770 "late endosome" evidence=IDA

GO:0006885 "regulation of pH" evidence=IMP

TAIR|locus:2160457 CHX18 "cation/H+ exchanger 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 2233 (791.1 bits), Expect = 1.7e-231, P = 1.7e-231
 Identities = 446/790 (56%), Positives = 573/790 (72%)

Query:    11 ACPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGG 70
             ACPAPMKATSNG FQG+NP+D+ALPL ILQI +V+  TR LA+LL+PLRQPRVIAE+IGG
Sbjct:     8 ACPAPMKATSNGVFQGDNPIDFALPLAILQIVIVIVLTRVLAYLLRPLRQPRVIAEVIGG 67

Query:    71 VLLGPSALGRSERFLNTVFPKKSMTVLETLANIXXXXXXXXXXXXXDIKSILRTGKKSLG 130
             ++LGPS LGRS+ FL+ VFPKKS+TVLETLAN+             D K++ RTGKK+LG
Sbjct:    68 IMLGPSLLGRSKAFLDAVFPKKSLTVLETLANLGLLFFLFLAGLEIDTKALRRTGKKALG 127

Query:   131 IALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLT 190
             IALAGITLPFALGIG+SFVL++T+ KG N    LVFMGV+LSITAFPVLARILAELKLLT
Sbjct:   128 IALAGITLPFALGIGSSFVLKATISKGVNSTAFLVFMGVALSITAFPVLARILAELKLLT 187

Query:   191 TDLGRIAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXGXXXXXXXXXXIRPVL 249
             T++GR+AM                                    G          I P+ 
Sbjct:   188 TEIGRLAMSAAAVNDVAAWILLALAIALSGSNTSPLVSLWVFLSGCAFVIGASFIIPPIF 247

Query:   250 SLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVL 309
               ++RR  EGEP++E Y+C TL++VL   F+TD IGIH++FGAFVVG+++PKEGPFAG L
Sbjct:   248 RWISRRCHEGEPIEETYICATLAVVLVCGFITDAIGIHSMFGAFVVGVLIPKEGPFAGAL 307

Query:   310 IEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSC 369
             +EK+ED+VSGLFLPLYF ASGLKTNVATI+GA SWGLL+LV   ACFGKI+GT+ V+ + 
Sbjct:   308 VEKVEDLVSGLFLPLYFVASGLKTNVATIQGAQSWGLLVLVTATACFGKILGTLGVSLAF 367

Query:   370 KVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAI 429
             K+P+RE++ LGF+MNTKGLVELIVLNIGKDRKVLNDQ FAI+VLMALFTTFITTP++MA+
Sbjct:   368 KIPMREAITLGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMALFTTFITTPVVMAV 427

Query:   430 YKPARKGVP---YKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRGRKRGK-LCL 485
             YKPAR+      YKHR ++R++T T+ RIL CFH   +IPS+INL+E+SRG ++G+ LC+
Sbjct:   428 YKPARRAKKEGEYKHRAVERENTNTQLRILTCFHGAGSIPSMINLLEASRGIEKGEGLCV 487

Query:   486 YAMHLMELSERSSAIAMVQKARNNGLPFWDKK--RDDRDYIVIAFEAYQQLSSVTVRPMT 543
             YA+HL ELSERSSAI MV K R NG+PFW+++    D D +V+AF+A+QQLS V VRPMT
Sbjct:   488 YALHLRELSERSSAILMVHKVRKNGMPFWNRRGVNADADQVVVAFQAFQQLSRVNVRPMT 547

Query:   544 AISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSV 603
             AIS++S IHEDIC +A RK+AA+++LPFHKHQ+LDG++E+    +  VNRR L  APCSV
Sbjct:   548 AISSMSDIHEDICTTAVRKKAAIVILPFHKHQQLDGSLETTRGDYRWVNRRVLLQAPCSV 607

Query:   604 GIFVDRGLGGTTQXXXXXXXXXXXXPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFV-AP 662
             GIFVDRGLGG++Q             FFGG DD EALAYG+RMAEHPGI LTV +FV +P
Sbjct:   608 GIFVDRGLGGSSQVSAQDVSYSVVVLFFGGPDDREALAYGLRMAEHPGIVLTVFRFVVSP 667

Query:   663 KGTSLTFGSDAPGVISIDLLRGDNDQVG------DDAIISDFKSIASKNQESITLEERLV 716
             +      G     ++++++   +N+         D+ I+S+ + I+S + ES+   E+ +
Sbjct:   668 ERV----GE----IVNVEVSNNNNENQSVKNLKSDEEIMSEIRKISSVD-ESVKFVEKQI 718

Query:   717 ESSQ-EIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTAS 775
             E++  ++   ++ + + NLFLVGRM      +  +    C ELGPVG  L S E ST AS
Sbjct:   719 ENAAVDVRSAIEEVRRSNLFLVGRMPGGEIALAIRENSECPELGPVGSLLISPESSTKAS 778

Query:   776 VVVLQQYNPT 785
             V+V+QQYN T
Sbjct:   779 VLVIQQYNGT 788

GO:0006812 "cation transport" evidence=IEA;IC

GO:0009507 "chloroplast" evidence=ISM

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0005770 "late endosome" evidence=IDA

GO:0006885 "regulation of pH" evidence=IMP

TAIR|locus:2128484 CHX17 "cation/H+ exchanger 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 2120 (751.3 bits), Expect = 1.6e-219, P = 1.6e-219
 Identities = 436/790 (55%), Positives = 556/790 (70%)

Query:    12 CPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGV 71
             CP PMKATSNG FQGENPL++ALPL+ILQIC+V+  TR LAFLL+PLRQPRVIAEI+GG+
Sbjct:     8 CPGPMKATSNGVFQGENPLEHALPLLILQICIVLLLTRLLAFLLRPLRQPRVIAEIVGGI 67

Query:    72 LLGPSALGRSERFLNTVFPKKSMTVLETLANIXXXXXXXXXXXXXDIKSILRTGKKSLGI 131
             LLGPSALG+S +F+NTVFP KS+TVL+TLAN+             D KS+ RTGK++L I
Sbjct:    68 LLGPSALGKSTKFINTVFPPKSLTVLDTLANLGLIFFLFLVGLELDPKSLKRTGKRALSI 127

Query:   132 ALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTT 191
             ALAGITLPF LGIGTSF LRS++  GA++AP LVFMGV+LSITAFPVLARILAE+KLLTT
Sbjct:   128 ALAGITLPFVLGIGTSFALRSSIADGASKAPFLVFMGVALSITAFPVLARILAEIKLLTT 187

Query:   192 DLGRIAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXGXXXXXXXXXXIRPVLS 250
             D+G+IA+                                    G          ++P + 
Sbjct:   188 DIGKIALSAAAVNDVAAWILLALAVALSGEGSSPLTSLWVFLSGCGFVLFCIFVVQPGIK 247

Query:   251 LMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLI 310
             L+A+R PEGEPV ELYVC TL +VLAASFVTD IGIHALFGAFV+G+I PKEG FA  L+
Sbjct:   248 LIAKRCPEGEPVNELYVCCTLGIVLAASFVTDFIGIHALFGAFVIGVIFPKEGNFANALV 307

Query:   311 EKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCK 370
             EK+ED+VSGLFLPLYF +SGLKTNVATI+GA SWGLL+LVI NACFGKI+GTV+V+  CK
Sbjct:   308 EKVEDLVSGLFLPLYFVSSGLKTNVATIQGAQSWGLLVLVIFNACFGKIIGTVLVSLYCK 367

Query:   371 VPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIY 430
             VPL +SLALGF+MNTKGLVELIVLNIGKDR VLNDQ FAI+VLMA+FTTF+TTP+++A+Y
Sbjct:   368 VPLDQSLALGFLMNTKGLVELIVLNIGKDRGVLNDQIFAIMVLMAIFTTFMTTPLVLAVY 427

Query:   431 KPARK--GVPYKHRTIQRKDTETE-FRILACFHSTRNIPSLINLVESSRG-RKRGKLCLY 486
             KP +      YK+RT++  +   +   ++ CF S  NIP+++NL+E+SRG  ++  L +Y
Sbjct:   428 KPGKSLTKADYKNRTVEETNRSNKPLCLMFCFQSIMNIPTIVNLIEASRGINRKENLSVY 487

Query:   487 AMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDR-----DYIVIAFEAYQQLSSVTVRP 541
             AMHLMELSERSSAI M  K R NGLPFW+K + +      D +V+AFEA+++LS V+VRP
Sbjct:   488 AMHLMELSERSSAILMAHKVRRNGLPFWNKDKSENNSSSSDMVVVAFEAFRRLSRVSVRP 547

Query:   542 MTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPC 601
             MTAIS +++IHEDIC SA RK+ A+++LPFHKH RLD   E+  + +  +N++ ++ +PC
Sbjct:   548 MTAISPMATIHEDICQSAERKKTAMVILPFHKHVRLDRTWETTRNDYRWINKKVMEESPC 607

Query:   602 SVGIFVDRGLGGTTQXXXXXXXXXXXXPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVA 661
             SV I VDRGLGGTT+             FFGG DD EALA+ +RMAEHPGI LTVV+F+ 
Sbjct:   608 SVAILVDRGLGGTTRVASSDFSLTITVLFFGGNDDREALAFAVRMAEHPGISLTVVRFIP 667

Query:   662 -----PKGTSLTFGSDAPGVISIDLLRGDNDQVGD-DAIISDFKSIASKNQ-ES-ITLEE 713
                  P+   +    D     +  L+  D + + +  A I + +S  S +  ES I  EE
Sbjct:   668 SDEFKPENVRIEITEDQLCSGATRLI--DIEAITELKAKIKEKESSRSNSDSESHIIYEE 725

Query:   714 RLVESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSE-FST 772
             ++V+  +E+  V+K  +K NLFLVG+    +            ELGP+G  L  SE  ST
Sbjct:   726 KIVKCYEEVIEVIKEYSKSNLFLVGKSPEGSVASGINVRSDTPELGPIGNLLTESESVST 785

Query:   773 TASVVVLQQY 782
              ASV+V+QQY
Sbjct:   786 VASVLVVQQY 795

GO:0005634 "nucleus" evidence=ISM

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0005770 "late endosome" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=IMP

GO:0006885 "regulation of pH" evidence=IMP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2024578 CHX16 "cation/H+ exchanger 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 1834 (650.7 bits), Expect = 3.3e-189, P = 3.3e-189
 Identities = 395/799 (49%), Positives = 510/799 (63%)

Query:     8 PPGACP---APMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVI 64
             P   CP   A MK TSNG F GE+PLD+A PL+ILQICLVVA TR LAFLL+P+RQPRV+
Sbjct:    10 PAMKCPKNVAMMKTTSNGVFDGESPLDFAFPLVILQICLVVAVTRSLAFLLRPMRQPRVV 69

Query:    65 AEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIXXXXXXXXXXXXXDIKSILRT 124
             AEIIGG+LLGPSALGR   + N++FP +S+TVL+TLAN+             D+ S+ RT
Sbjct:    70 AEIIGGILLGPSALGRITSYKNSIFPARSLTVLDTLANLGLLLFLFLVGLEIDLTSLRRT 129

Query:   125 GKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQA--PLLVFMGVSLSITAFPVLARI 182
             GKK++ IA AG+ LPF +GI TSF        G N    P ++FMGV+LSITAF VLARI
Sbjct:   130 GKKAISIAAAGMLLPFGMGIVTSFAFPEASSSGDNSKVLPFIIFMGVALSITAFGVLARI 189

Query:   183 LAELKLLTTDLGRIAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXX 242
             LAELKLLTTDLGRI+M                                            
Sbjct:   190 LAELKLLTTDLGRISMNAAAINDVAAWVLLALAVSLSGDRNSPLVPLWVLLSGIAFVIAC 249

Query:   243 XXIRP-VLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPK 301
               I P +   ++RR PEGEP+ E+YVC+ L  VL A F TD IGIHA+FGAFV+G++ PK
Sbjct:   250 FLIVPRIFKFISRRCPEGEPIGEMYVCVALCAVLLAGFATDAIGIHAIFGAFVMGVLFPK 309

Query:   302 EGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVG 361
              G F+  ++EKIED+V GL LPLYF  SGLKT++ TI+G  SWG L LVI+ ACFGKIVG
Sbjct:   310 -GHFSDAIVEKIEDLVMGLLLPLYFVMSGLKTDITTIQGVKSWGRLALVIVTACFGKIVG 368

Query:   362 TVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFI 421
             TV VA  CKV LRES+ LG +MNTKGLVELIVLNIGKDRKVL+DQ FAI+VLMA+FTTFI
Sbjct:   369 TVSVALLCKVRLRESVVLGVLMNTKGLVELIVLNIGKDRKVLSDQTFAIMVLMAIFTTFI 428

Query:   422 TTPILMAIYKPAR-----KGVPYKHRTIQRK---DTETE----FRILACFHSTRNIPSLI 469
             TTPI++A+YKP+        V YK+R  +RK   D E E     ++L C  S+++I  ++
Sbjct:   429 TTPIVLALYKPSETTQTHSSVSYKNRKHRRKIENDEEGEKMQQLKVLVCLQSSKDIDPMM 488

Query:   470 NLVESSRGRKRGK--LCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIA 527
              ++E++RG    K   C+Y MHL +LSER S+I MVQK R+NGLPFW+KKR++   + +A
Sbjct:   489 KIMEATRGSNETKERFCVYVMHLTQLSERPSSIRMVQKVRSNGLPFWNKKRENSSAVTVA 548

Query:   528 FEAYQQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQR-LDGAMESLGH 586
             FEA  +LSSV+VR +TAIS LS+IHEDIC+SA  K  A ++LPFHK  R L+   E++  
Sbjct:   549 FEASSKLSSVSVRSVTAISPLSTIHEDICSSADSKCTAFVILPFHKQWRSLEKEFETVRS 608

Query:   587 TFHLVNRRALQHAPCSVGIFVDRGLG-GTTQXXXXXXXXXXXXPFFGGLDDCEALAYGMR 645
              +  +N+R L+++PCSVGI VDRGLG   +              FFGG DD EAL YG+R
Sbjct:   609 EYQGINKRVLENSPCSVGILVDRGLGDNNSPVASSNFSLSVNVLFFGGCDDREALVYGLR 668

Query:   646 MAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASKN 705
             MAEHPG+ LTVV    P+  S  F          D L      +   ++   F +   K 
Sbjct:   669 MAEHPGVNLTVVVISGPE--SARF----------DRLEAQETSLC--SLDEQFLAAIKKR 714

Query:   706 QESITLEERLVESSQEIAGVLKSMNKCNLFLVGRMA--PTAPLMDTKSAEYCSELGPVGC 763
               +   EER V S++E+  +++   +C++ LVG+ +  P    +     E C ELGPVG 
Sbjct:   715 ANAARFEERTVNSTEEVVEIIRQFYECDILLVGKSSKGPMVSRLPVMKIE-CPELGPVGN 773

Query:   764 FLASSEFSTTASVVVLQQY 782
              + S+E ST+ SV+V+QQY
Sbjct:   774 LIVSNEISTSVSVLVVQQY 792

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006885 "regulation of pH" evidence=IMP

TAIR|locus:2054152 CHX15 "cation/hydrogen exchanger 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 1725 (612.3 bits), Expect = 1.2e-177, P = 1.2e-177
 Identities = 355/794 (44%), Positives = 511/794 (64%)

Query:     1 MATQQHPPPGA---CPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKP 57
             MAT + P   A   C AP   T+NG +QG+NPLD++LPL +LQ+ LVV  TRF  F+LKP
Sbjct:     1 MATSEEPSTDASIICYAPSMITTNGVWQGDNPLDFSLPLFVLQLTLVVVVTRFFVFILKP 60

Query:    58 LRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIXXXXXXXXXXXXXD 117
              RQPRVI+EI+GG++LGPS LGRS +F +T+FP++S+ VLET+AN+             D
Sbjct:    61 FRQPRVISEILGGIVLGPSVLGRSTKFAHTIFPQRSVMVLETMANVGLLYFLFLVGVEMD 120

Query:   118 IKSILRTGKKSLGIALAGITLPFALGIGTSFVL-RSTVLKGANQAPLLVFMGVSLSITAF 176
             I  + +TGK++L IA+ G+ LPF +G   SF + RS    G  Q   ++F+GV+LS+TAF
Sbjct:   121 IMVVRKTGKRALTIAIGGMVLPFLIGAAFSFSMHRSEDHLG--QGTYILFLGVALSVTAF 178

Query:   177 PVLARILAELKLLTTDLGRIAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXX 236
             PVLARILAELKL+ T++GRI+M                                      
Sbjct:   179 PVLARILAELKLINTEIGRISMSAALVNDMFAWILLALAIALAESDKTSFASLWVMISSA 238

Query:   237 XXXXX-XXXIRPVLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVV 295
                      +RP ++ + R++PEGE   E ++C+ L+ V+ + F+TD IG H++FGAFV 
Sbjct:   239 VFIAVCVFVVRPGIAWIIRKTPEGENFSEFHICLILTGVMISGFITDAIGTHSVFGAFVF 298

Query:   296 GIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNAC 355
             G+++P  GP    LIEK+ED VSGL LPL+FA SGLKTN+A I+G  +W  L LVI  AC
Sbjct:   299 GLVIPN-GPLGLTLIEKLEDFVSGLLLPLFFAISGLKTNIAAIQGPATWLTLFLVIFLAC 357

Query:   356 FGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMA 415
              GK++GTV+VA+   +P+RE + LG ++NTKGLVE+IVLN+GKD+KVL+D+ FA +VL+A
Sbjct:   358 AGKVIGTVIVAFFHGMPVREGITLGLLLNTKGLVEMIVLNVGKDQKVLDDETFATMVLVA 417

Query:   416 LFTTFITTPILMAIYKPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESS 475
             L  T + TPI+  +YKP +K V YK RTIQ+   ++E R+L C H+ RN+P++INL+E+S
Sbjct:   418 LVMTGVITPIVTILYKPVKKSVSYKRRTIQQTKPDSELRVLVCVHTPRNVPTIINLLEAS 477

Query:   476 RGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQLS 535
                KR  +C+Y +HL+EL+ R+SA+ +V   R +G P  ++ +   D+I+ AFE Y+Q +
Sbjct:   478 HPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHA 537

Query:   536 S-VTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRR 594
             + V V+P+TAIS  S++HED+C+ A  KR + I++PFHK Q +DG MES    + LVN+ 
Sbjct:   538 AFVAVQPLTAISPYSTMHEDVCSLAEDKRVSFIIIPFHKQQTVDGGMESTNPAYRLVNQN 597

Query:   595 ALQHAPCSVGIFVDRGLGGTTQXXXXXXXXXXXXPFFGGLDDCEALAYGMRMAEHPGIKL 654
              L+++PCSVGI VDRGL G T+             FFGG DD EALAY  RMA+HPGI L
Sbjct:   598 LLENSPCSVGILVDRGLNGATRLNSNTVSLQVAVLFFGGPDDREALAYAWRMAQHPGITL 657

Query:   655 TVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVG--DDAIISDFKSIASKNQESITLE 712
             TV++F+  +  + T  + A     + + + D+ +    DD  I+ F++  +   ESI   
Sbjct:   658 TVLRFIHDEDEADTASTRATNDSDLKIPKMDHRKQRQLDDDYINLFRA-ENAEYESIVYI 716

Query:   713 ERLVESSQEIAGVLKSMNKCN-LFLVGR-MAPTAPLMD--TKSAEYCSELGPVGCFLASS 768
             E+LV + +E    ++SM+  + LF+VGR    ++PL    T  +E C ELG +G  LASS
Sbjct:   717 EKLVSNGEETVAAVRSMDSSHDLFIVGRGEGMSSPLTAGLTDWSE-CPELGAIGDLLASS 775

Query:   769 EFSTTASVVVLQQY 782
             +F+ T SV+V+QQY
Sbjct:   776 DFAATVSVLVVQQY 789

GO:0006812 "cation transport" evidence=IEA;IC

GO:0009507 "chloroplast" evidence=ISM

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0006885 "regulation of pH" evidence=IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2084370 CHX20 "cation/H+ exchanger 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 994 (355.0 bits), Expect = 2.1e-154, Sum P(2) = 2.1e-154
 Identities = 214/365 (58%), Positives = 263/365 (72%)

Query:   245 IRPVLSLMARR-SPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEG 303
             IRP +  +A+R SPE + V+E YVC+TL+ V+ + F TD IGIH++FGAFV G+ +PK+G
Sbjct:   248 IRPGMKWVAKRGSPENDVVRESYVCLTLAGVMVSGFATDLIGIHSIFGAFVFGLTIPKDG 307

Query:   304 PFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTV 363
              F   LIE+IED VSGL LPLYFA SGLKT+VA IRGA SWG+L LV++ AC GKIVGT 
Sbjct:   308 EFGQRLIERIEDFVSGLLLPLYFATSGLKTDVAKIRGAESWGMLGLVVVTACAGKIVGTF 367

Query:   364 VVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITT 423
             VVA   KVP RE+L LGF+MNTKGLVELIVLNIGK++KVLND+ FAILVLMALFTTFITT
Sbjct:   368 VVAVMVKVPAREALTLGFLMNTKGLVELIVLNIGKEKKVLNDETFAILVLMALFTTFITT 427

Query:   424 PILMAIYKPARKGVPYKHRTIQ--RKDTETEFRILACFHSTRNIPSLINLVESSRGRKRG 481
             P +MAIYKPAR G   K + +   +  T+ E RILAC H   N+ SLI+LVES R  K  
Sbjct:   428 PTVMAIYKPAR-GTHRKLKDLSASQDSTKEELRILACLHGPANVSSLISLVESIRTTKIL 486

Query:   482 KLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRD-DRDYIVIA-FEAYQQLSSVTV 539
             +L L+ MHLMEL+ERSS+I MVQ+AR NGLPF  + R  +R   VI  FEAY+QL  V V
Sbjct:   487 RLKLFVMHLMELTERSSSIIMVQRARKNGLPFVHRYRHGERHSNVIGGFEAYRQLGRVAV 546

Query:   540 RPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHA 599
             RP+TA+S L ++HEDIC  A  KR  +I+LPFHK    D      GH+ H  +     + 
Sbjct:   547 RPITAVSPLPTMHEDICHMADTKRVTMIILPFHKRWNADH-----GHSHHHQDGGGDGNV 601

Query:   600 PCSVG 604
             P +VG
Sbjct:   602 PENVG 606

GO:0006812 "cation transport" evidence=IEA;IC

GO:0009507 "chloroplast" evidence=ISM

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0012505 "endomembrane system" evidence=IDA

GO:0030104 "water homeostasis" evidence=IMP

GO:0030007 "cellular potassium ion homeostasis" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=IMP

GO:0006885 "regulation of pH" evidence=IMP

TAIR|locus:2031968 CHX23 "cation/H+ exchanger 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 811 (290.5 bits), Expect = 1.8e-101, Sum P(2) = 1.8e-101
 Identities = 194/555 (34%), Positives = 308/555 (55%)

Query:   245 IRPVLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGP 304
             IRP ++ +  ++ +   V + +V   L  V+    +TD  G+H++ GAF+ G+ +P +  
Sbjct:   262 IRPGIAWIFAKTVKAGHVGDTHVWFILGGVVLCGLITDACGVHSITGAFLFGLSIPHDHI 321

Query:   305 FAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVV 364
                ++ EK+ D +SG+ +PL++   GL+ ++  +   T   ++++VI ++   KIV TV+
Sbjct:   322 IRNMIEEKLHDFLSGILMPLFYIICGLRADIGFMLQFTDKFMMVVVICSSFLVKIVTTVI 381

Query:   365 VAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTP 424
              +    +P+R++ A+G +MNTKG + L+VLN G+D K L+   +  + +  L  + +  P
Sbjct:   382 TSLFMHIPMRDAFAIGALMNTKGTLSLVVLNAGRDTKALDSPMYTHMTIALLVMSLVVEP 441

Query:   425 ILMAIYKPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRGRKRGKLC 484
             +L   YKP +K   YKHRT+Q+   ETE R+LAC H   N+  + NL++ S   K+  L 
Sbjct:   442 LLAFAYKPKKKLAHYKHRTVQKIKGETELRVLACVHVLPNVSGITNLLQVSNATKQSPLS 501

Query:   485 LYAMHLMELSERSSAIAMVQKAR-NNGLPFWDKKRDDRDYIVIAFEAYQ-QLSSVTVRPM 542
             ++A+HL+EL+ R++A  ++          F D+ R + D I   FEA +    ++TV+ +
Sbjct:   502 VFAIHLVELTGRTTASLLIMNDECKPKANFSDRVRAESDQIAETFEAMEVNNDAMTVQTI 561

Query:   543 TAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHL-VNRRALQHAPC 601
             TA+S  +++HEDIC  A  KR   I+LP+HKH   DG M   G++ H  +N+  L HAPC
Sbjct:   562 TAVSPYATMHEDICVLAEDKRVCFIILPYHKHLTPDGRMGE-GNSSHAEINQNVLSHAPC 620

Query:   602 SVGIFVDRGLGGTTQXXXXXXXXXXXXP--FFGGLDDCEALAYGMRMAEHPGIKLTVVKF 659
             SVGI VDRG+                    F GG DD EAL+Y  RM     IKLTVV+F
Sbjct:   621 SVGILVDRGMAMVRSESFRGESMKREVAMLFVGGPDDREALSYAWRMVGQHVIKLTVVRF 680

Query:   660 VAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIIS-DFKSIASKNQESITLEERLVES 718
             V P G      S   G ++ +  R    QV D+ I   +FK++   N  S+   E++V  
Sbjct:   681 V-P-GREALISS---GKVAAEYER--EKQVDDECIYEFNFKTM---NDSSVKYIEKVVND 730

Query:   719 SQEIAGVLKSM---NKCNLFLVGRM----AP-TAPLMDTKSAEYCSELGPVGCFLASSEF 770
              Q+    ++ M   N  +L++VGR     +P TA L D  S+    ELG +G  LASS F
Sbjct:   731 GQDTIATIREMEDNNSYDLYVVGRGYNSDSPVTAGLNDWSSSP---ELGTIGDTLASSNF 787

Query:   771 STTASVVVLQQYNPT 785
             +  ASV+V+QQY+ T
Sbjct:   788 TMHASVLVIQQYSAT 802

GO:0005886 "plasma membrane" evidence=ISM

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0010183 "pollen tube guidance" evidence=IGI

GO:0071805 "potassium ion transmembrane transport" evidence=IDA

TAIR|locus:2007392 CHX14 "cation/hydrogen exchanger 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 650 (233.9 bits), Expect = 1.6e-92, Sum P(2) = 1.6e-92
 Identities = 168/545 (30%), Positives = 288/545 (52%)

Query:   246 RP-VLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGP 304
             RP ++ L  RRS   +   E+     + ++L  S  ++ +G+HA FGAF +G+ +P +GP
Sbjct:   261 RPAIIWLTERRSISIDKAGEIPFFPIIMVLLTISLTSEVLGVHAAFGAFWLGVSLP-DGP 319

Query:   305 FAGV-LIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTV 363
               G  L  K+E   + L LP + + SGL+TN   I G +   ++  VIL     K +GT 
Sbjct:   320 PLGTGLTTKLEMFATSLMLPCFISISGLQTNFFII-GESHVKIIEAVILITYGCKFLGTA 378

Query:   364 VVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITT 423
               +  C + + ++ +L  +M  +G++E+    + KD KVLN + F +L++  L  T I+ 
Sbjct:   379 AASAYCNIQIGDAFSLALLMCCQGVIEIYTCVMWKDEKVLNTECFNLLIITLLLVTGISR 438

Query:   424 PILMAIYKPARKGVPYKHRTI-QRKDTETEFRILACFHSTRNIPSLINLVESSRGRKRGK 482
              +++ +Y P+++      RTI   +    +FR+L C ++  N+PS++NL+E+S   +   
Sbjct:   439 FLVVCLYDPSKRYRSKSKRTILDTRQRNLQFRLLLCVYNVENVPSMVNLLEASYPSRFSP 498

Query:   483 LCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQLSSVTV--R 540
             + ++ +HL+EL  R+ A+ +V   + N L   D       +IV  F+ ++Q +  T+  +
Sbjct:   499 ISVFTLHLVELKGRAHAV-LVPHHQMNKL---DPNTVQSTHIVNGFQRFEQQNQGTLMAQ 554

Query:   541 PMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAP 600
               TA +  SSI++DIC  A  K+A LI++PFHK   +DG ++ +  +   +N   L+ AP
Sbjct:   555 HFTAAAPFSSINDDICTLALDKKATLIVIPFHKQYAIDGTVDHVNPSIRNINLNVLEKAP 614

Query:   601 CSVGIFVDRG-LGGTTQXXXXXXXXXXXXPFFGGLDDCEALAYGMRMAEHPGIKLTVVKF 659
             CSVGIF+DRG   G                F  G DD EALA+ MR+AEHP + +T++ F
Sbjct:   615 CSVGIFIDRGETEGRRSVLMSYTWRNVAVIFIEGRDDAEALAFSMRIAEHPEVSVTMIHF 674

Query:   660 VAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASKNQESITLEERLVESS 719
                  +SL        V+ ++       ++ +  +I+DFK+ A  ++  I+  E +V   
Sbjct:   675 --RHKSSLQQNH----VVDVE------SELAESYLINDFKNFAM-SKPKISYREEIVRDG 721

Query:   720 QEIAGVLKSM-NKCNLFLVGRM--APTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASV 776
              E   V+ S+ +  +L +VGR     ++ L        C ELG +G   ASS+F    SV
Sbjct:   722 VETTQVISSLGDSFDLVVVGRDHDLESSVLYGLTDWSECPELGVIGDMFASSDFHF--SV 779

Query:   777 VVLQQ 781
             +V+ Q
Sbjct:   780 LVIHQ 784

GO:0005886 "plasma membrane" evidence=ISM

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0006814 "sodium ion transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

TAIR|locus:2060827 ATCHX13 [Arabidopsis thaliana (taxid:3702)]

 Score = 610 (219.8 bits), Expect = 5.0e-87, Sum P(2) = 5.0e-87
 Identities = 168/569 (29%), Positives = 284/569 (49%)

Query:   246 RPVLSLMARRSPEGEPVKELYVCITLSMVLA-ASFVTDTIGIHALFGAFVVGIIMPKEGP 304
             RP++  + +R  +    K++     + ++L+ AS   + +G+HA FGAF +G+ +P   P
Sbjct:   263 RPIIVWLTQRKTKSMDKKDVVPFFPVLLLLSIASLSGEAMGVHAAFGAFWLGVSLPDGPP 322

Query:   305 FAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLL-VILNACFG-KIVGT 362
                 L  K+E   S LFLP + A SGL+TN   I  +    ++++ +IL   +G K +GT
Sbjct:   323 LGTELAAKLEMFASNLFLPCFIAISGLQTNFFEITESHEHHVVMIEIILLITYGCKFLGT 382

Query:   363 VVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFIT 422
                +  C+  + ++L L F+M  +G++E+    + KD +V++ + F ++++  LF T I+
Sbjct:   383 AAASAYCQTQIGDALCLAFLMCCQGIIEVYTTIVWKDAQVVDTECFNLVIITILFVTGIS 442

Query:   423 TPILMAIYKPARKGVPYKHRTI-QRKDTETEFRILACFHSTRNIPSLINLVESSRGRKRG 481
               +++ +Y P+++      RTI   +    + R+L   ++  N+PS++NL+E++   +  
Sbjct:   443 RFLVVYLYDPSKRYKSKSKRTILNTRQHNLQLRLLLGLYNVENVPSMVNLLEATYPTRFN 502

Query:   482 KLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQL--SSVTV 539
              +  + +HL+EL  R+ A+ +    + N L   D       +IV AF+ ++Q    ++  
Sbjct:   503 PISFFTLHLVELKGRAHAL-LTPHHQMNKL---DPNTAQSTHIVNAFQRFEQKYQGALMA 558

Query:   540 RPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHA 599
             +  TA +  SSI+ DIC  A  K+A LI++PFHK   +DG +  +      +N   L  A
Sbjct:   559 QHFTAAAPYSSINNDICTLALDKKATLIVIPFHKQYAIDGTVGQVNGPIRTINLNVLDAA 618

Query:   600 PCSVGIFVDRG-LGGTTQXXXXXXXXXXXXPFFGGLDDCEALAYGMRMAEHPGIKLTVVK 658
             PCSV IF+DRG   G                F GG DD EALA  MRMAE P + +T++ 
Sbjct:   619 PCSVAIFIDRGETEGRRSVLMTNTWQNVAMLFIGGKDDAEALALCMRMAEKPDLNVTMIH 678

Query:   659 FVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASKNQESITLEERLVES 718
             F   +  S              L   D   + +  +ISDFKS A+ N+  I   E +V  
Sbjct:   679 F---RHKSA-------------LQDEDYSDMSEYNLISDFKSYAA-NKGKIHYVEEIVRD 721

Query:   719 SQEIAGVLKSMNKC-NLFLVGRM--APTAPLMDTKSAEYCSELGPVGCFLASSEFSTTAS 775
               E   V+ S+    ++ LVGR     ++ L        C ELG +G  L S +F  +  
Sbjct:   722 GVETTQVISSLGDAYDMVLVGRDHDLESSVLYGLTDWSECPELGVIGDMLTSPDFHFSVL 781

Query:   776 VVVLQQYNPTLNLH-----PLVEEEESDD 799
             VV  QQ +  L +      P VE ++  D
Sbjct:   782 VVHQQQGDDLLAMDDSYKLPNVEHQKIGD 810

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006813 "potassium ion transport" evidence=IGI

GO:0015079 "potassium ion transmembrane transporter activity" evidence=IGI;IMP;IDA

GO:0006814 "sodium ion transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

TAIR|locus:2083830 chx28 "cation/hydrogen exchanger 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 587 (211.7 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
 Identities = 168/562 (29%), Positives = 285/562 (50%)

Query:   245 IRPV-LSLMARRSPEGEPVKELYVCITLS-MVLAASFVT---DTIGIHALFGAFVVGIIM 299
             + P+ L+ +   +PEG+P+K  ++ ++L+ +VL  SF T   +++  + +  AF  G+ +
Sbjct:   232 VSPIFLNWVNNENPEGKPLKGSHLVMSLAFVVLICSFPTWPPESM-YNPILSAFTAGLFL 290

Query:   300 PKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVAT--IRGATSWGLLLLVILNACFG 357
             P +G  +  +I KI  ++S +F P++F   G   ++    I    +W     ++     G
Sbjct:   291 PNKGRMSKWIINKINYLLSTVFYPIFFFWVGFIIHMRNFDITDKMAWVRFFSLLGTVIAG 350

Query:   358 KIVGTVVVAWSCKVPLRESLALGFIMNTKGL--VELIVLNIGKDRKVLNDQAFAILVLMA 415
             K+ GTV+        + E+ +LG ++ TKG   V L  L I  +R  +     A+++ + 
Sbjct:   351 KVTGTVLCGLLLGYHVPETASLGLLLTTKGHFHVYLAALAIRTNR--VKSTTGALIIFII 408

Query:   416 LFTTFITTPILMAIYKPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESS 475
             +FT   +  ++M I K ARK VP     +Q  D  TE RIL   H   NI S +N++E  
Sbjct:   409 VFTVVYSPFVVMDIIKRARKRVPVHIMALQWLDPTTELRILIGLHGPHNIGSTLNVMEIC 468

Query:   476 RG-RKRGKLCLYAMHLMELSERSSAIAMVQKAR---NNGLPFWDKKRDD-RDYIVIAFEA 530
              G R+ G +  YA  ++EL++  +A           N+ +   D+   + R+ I  A   
Sbjct:   469 HGGREPGSI-FYATDMVELTDEIAATLKKGGGAGQSNDSVTVTDRSVTEMRESITAAVNG 527

Query:   531 YQQLSS---VTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHT 587
             Y +L +   VTVR M A+S   ++  D+C  A     ++I+LPFHK    DG +++ GH 
Sbjct:   528 YGELRNGQGVTVRRMLALSTFVTMAHDVCGLADELMVSIIILPFHKRLNPDGTLDA-GHA 586

Query:   588 -FHLVNRRALQHAPCSVGIFVDRGLGGTTQXXXXXXXXXXXXPFFGGLDDCEALAYGMRM 646
              F  VNR+ L++APCSVGI VDR  G T +             F GG DD EALA+  ++
Sbjct:   587 GFRHVNRKILKNAPCSVGILVDRSFGQTEEAWRPGASMGIAIIFIGGRDDREALAFAAQV 646

Query:   647 AEHPGIKLTVVKFVAPKGTSLTFGSDAPGVIS-IDLLRGDNDQVGDDAIISDF--KSIAS 703
             A HP +KL V++F+  K +          +++   ++  + +   DD   ++F  + IA 
Sbjct:   647 ARHPAVKLKVIRFLEDKSSQNA--QKRSSILNRASVVDQEEEMKLDDECFAEFYERYIAG 704

Query:   704 KNQESITLEERLVESSQEIAGVLKSMN-KCNLFLVGR---MAPTAPLMDTKSAEYCSELG 759
               + S  +E+ L  SS+     LKS++ +  L +VGR    A +         + C ELG
Sbjct:   705 GGRVSY-MEKHLTNSSETFTA-LKSLDGEYGLVIVGRGGGRASSGLTTGLNDWQQCPELG 762

Query:   760 PVGCFLASSEFSTTASVVVLQQ 781
             P+G  L+ S+FS   S++++QQ
Sbjct:   763 PIGDVLSGSDFSHNTSMLIIQQ 784

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0016020 "membrane" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LUN4	CHX19_ARATH	No assigned EC number	0.7204	0.9618	0.9775	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Al_scaffold_0003_1853 annotation not avaliable (800 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	813
PLN03159	832	PLN03159, PLN03159, cation/H(+) antiporter 15; Pro	0.0
pfam00999	370	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang	3e-66
COG0475	397	COG0475, KefB, Kef-type K+ transport systems, memb	1e-65
TIGR00932	273	TIGR00932, 2a37, transporter, monovalent cation:pr	2e-39
COG4651	408	COG4651, RosB, Kef-type K+ transport system, predi	9e-15
PRK03562	621	PRK03562, PRK03562, glutathione-regulated potassiu	3e-13
PRK03659	601	PRK03659, PRK03659, glutathione-regulated potassiu	2e-11
PRK10669	558	PRK10669, PRK10669, putative cation:proton antipor	1e-08
COG0025	429	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport	8e-08
TIGR00773	373	TIGR00773, NhaA, Na+/H+ antiporter NhaA	0.001

>gnl|CDD|215608 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional

 Score =  861 bits (2227), Expect = 0.0
 Identities = 397/781 (50%), Positives = 566/781 (72%), Gaps = 14/781 (1%)

Query: 12  CPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGV 71
           C APM  T+NG +QG+NPLD++LPL ILQ+ LVV  TR L F+LKP RQPRVI+EI+GGV
Sbjct: 19  CYAPMMITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGV 78

Query: 72  LLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGI 131
           +LGPS LG+SE F NT+FP +S+ VLET+AN+GLL+FLFLVG+E+DI  I RTGKK+L I
Sbjct: 79  ILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAI 138

Query: 132 ALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTT 191
           A+AG+ LPF +G+  SF+    V +  +Q   ++F+GV+LS+TAFPVLARILAE+KL+ T
Sbjct: 139 AIAGMALPFCIGLAFSFIFHQ-VSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINT 197

Query: 192 DLGRIAMSAAAVNDVAAWVLLALAIALS-SSSSSLIAVWVLLSGAAFVVFAVFVIRPVLS 250
           +LGRIAMSAA VND+ AW+LLALAIAL+ + S+SL ++WVLLS  AFV+F  +V+RP + 
Sbjct: 198 ELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGIW 257

Query: 251 LMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLI 310
            + RR+PEGE   E Y+C+ L+ V+ + F+TD IG H++FGAFV G+++P  GP    LI
Sbjct: 258 WIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLI 316

Query: 311 EKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCK 370
           EK+ED VSGL LPL+FA SGLKTNV  I+G  +WGLL+LVI+ A  GKI+GT+++A+   
Sbjct: 317 EKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYT 376

Query: 371 VPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIY 430
           +P RE + LGF+MNTKGLVE+IVLN+G+D++VL+D++FA++VL+A+  T + TP++  +Y
Sbjct: 377 MPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVY 436

Query: 431 KPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHL 490
           +PAR+ V YK RTIQR   + E R+L C H+ RN+P++INL+E+S   KR  +C+Y +HL
Sbjct: 437 RPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHL 496

Query: 491 MELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQLSS-VTVRPMTAISALS 549
           +EL+ R+SA+ +V   R +G P  ++ +   D+I+ AFE Y+Q +  V+V+P+TAIS  S
Sbjct: 497 VELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHAGCVSVQPLTAISPYS 556

Query: 550 SIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVDR 609
           ++HED+C  A  KR +LI++PFHK Q +DG ME+    F  VN+  L +APCSVGI VDR
Sbjct: 557 TMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDR 616

Query: 610 GLGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTF 669
           GL G T++ +++VS+ V V FFGG DD EALAY  RM+EHPGI LTV++F+  +  + T 
Sbjct: 617 GLSGATRLASNQVSHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTA 676

Query: 670 GS-----DAPGVISIDLLRGDNDQVGDDAIISDFKSIASKNQESITLEERLVESSQEIAG 724
                    P + +++   G  ++  D+  I++F++  + N ESI   E++V + +E   
Sbjct: 677 SQPASSPSDPRIPTVE-TDGKKERQLDEEYINEFRARNAGN-ESIVYTEKVVSNGEETVA 734

Query: 725 VLKSM-NKCNLFLVGRMAPTAPLMDTKSAEY--CSELGPVGCFLASSEFSTTASVVVLQQ 781
            ++SM +  +LF+VGR       +     ++  C ELG +G  LASS+F+ T SV+V+QQ
Sbjct: 735 AIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQ 794

Query: 782 Y 782
           Y
Sbjct: 795 Y 795

Length = 832

>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family

 Score =  224 bits (573), Expect = 3e-66
 Identities = 118/390 (30%), Positives = 197/390 (50%), Gaps = 25/390 (6%)

Query: 41  ICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETL 100
             L++        L + L  P V+  I+ G+LLGPS LG            +    LE L
Sbjct: 1   AVLLLLLALLAGLLARRLGLPPVVGLILAGILLGPSGLG----------LVEPDLDLEVL 50

Query: 101 ANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQ 160
           A +GL   LFL GLELD++ + + GK  L +AL G+ +PF LG+  + +       G   
Sbjct: 51  AELGLPLLLFLAGLELDLRELRKNGKSILLLALLGVLIPFLLGLLLALL-------GGLG 103

Query: 161 APLL--VFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIAL 218
            PLL  +  G +LS T+  V+  IL E   L T LG + +  + +ND  A VLLA+ +AL
Sbjct: 104 IPLLEALLFGAALSATSPVVVLAILKERGRLNTRLGTLILGESVLNDAVAVVLLAVLLAL 163

Query: 219 SSSSSSLIAVWVLLS--GAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCITLSMVLA 276
           +          +LL     A     + ++   L  +  R   G+   EL V + L++ L 
Sbjct: 164 AGVGGLSDLGLLLLIFLVVALGGLLLGLVFGWLLRLITRFTSGDR--ELEVLLVLALALL 221

Query: 277 ASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVA 336
           A+ + + +G+  + GAF+ G+++     FA  L EK+E    GLFLPL+F + GL  +++
Sbjct: 222 AALLAELLGLSGILGAFLAGLVLS-NYAFANELSEKLEPFGYGLFLPLFFVSVGLSLDLS 280

Query: 337 TIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNI 396
           ++   +   L+LL+++    GK++G  ++A    + LRE+L +GF    +G V L +  I
Sbjct: 281 SL-LLSLLLLVLLLLVAILLGKLLGVFLLARLLGLSLREALIVGFGGLQRGAVSLALAAI 339

Query: 397 GKDRKVLNDQAFAILVLMALFTTFITTPIL 426
           G    +++ + + +LV + L TT +   + 
Sbjct: 340 GLQLGLIDRELYTLLVAVVLLTTLLKPLLK 369

Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. Length = 370

>gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

 Score =  224 bits (572), Expect = 1e-65
 Identities = 110/410 (26%), Positives = 205/410 (50%), Gaps = 30/410 (7%)

Query: 33  ALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKK 92
            L LI+LQ+ +++     L  L K L  P V+  ++ G++LGP  L             +
Sbjct: 3   MLSLILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLL---------LIIE 53

Query: 93  SMTVLETLANIGLLFFLFLVGLELDIKSILRTGKK-SLGIALAGITLPFALGIGTSFVLR 151
           S  ++E LA +G++F LFL+GLE D++ + + G+   LG+A  G+T PF LG+     + 
Sbjct: 54  SSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGIL 113

Query: 152 STVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVL 211
              L  A      +F+G +L++++  ++ +IL EL LL T  G++ + A   +D+AA +L
Sbjct: 114 GLSLIAA------LFLGAALALSSTAIVLKILMELGLLKTREGQLILGALVFDDIAAILL 167

Query: 212 LALAIALSSSSSSLIAVWVLLSGAAFVVFAV------FVIRPVLSLMARRSPEGEPVKEL 265
           LA+  AL+   S  +   + L  A     A+      +++ P+   +A+         EL
Sbjct: 168 LAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKTESS-----EL 222

Query: 266 YVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLY 325
           ++   L +VL A+++ + +G+  + GAF+ G+++ +       L EKIE    GLF+PL+
Sbjct: 223 FILFVLLLVLGAAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLF 282

Query: 326 FAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNT 385
           F + G+  ++  +       LLL+ +  A  GKI+G  + A       R +L +G ++  
Sbjct: 283 FISVGMSLDLGVLLENLLLILLLVAL--AILGKILGAYLAARLLGFSKRLALGIGLLLRQ 340

Query: 386 KGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIYKPARK 435
            G    ++  I      +++     +V++++ TT I   +   + K   K
Sbjct: 341 GGEFAFVLAGIALGS-AISEALLTAVVILSMITTPILPLLTPILLKRLLK 389

Length = 397

>gnl|CDD|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family

 Score =  147 bits (372), Expect = 2e-39
 Identities = 79/293 (26%), Positives = 140/293 (47%), Gaps = 35/293 (11%)

Query: 50  FLAFLLKP----LRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGL 105
             A L  P    L  P V+  ++ GVL+GPS LG     ++ V        +  LA  G+
Sbjct: 2   LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLG----LISNV------EGVNHLAEFGV 51

Query: 106 LFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFA-LGIGTSFVLRSTVLKGANQAPLL 164
           +  +FL+GLELD++ + +  K + G+ +  + +P   LG+    +L              
Sbjct: 52  ILLMFLIGLELDLERLWKLRKAAFGVGVLQVLVPGVLLGLLLGHLL-------GLALGAA 104

Query: 165 VFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSS 224
           V +G+ L++++  V+ ++L E  LL T  G+  +      D+A   LLAL   L++S+S+
Sbjct: 105 VVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSAST 164

Query: 225 LIAVWVLLSGAAFVVFAVFVI------RPVLSLMARRSPEGEPVKELYVCITLSMVLAAS 278
                 LL    F+ F + V+      RPVL L A          EL+   +L ++  ++
Sbjct: 165 EHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAE-----LRPSELFTAGSLLLMFGSA 219

Query: 279 FVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGL 331
           +  D +G+    GAF+ G+++  E  +   L   +E +  G+ LPL+F + G+
Sbjct: 220 YFADLLGLSMALGAFLAGVVLS-ESEYRHKLESDLEPI-GGVLLPLFFISVGM 270

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 273

>gnl|CDD|226998 COG4651, RosB, Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]

 Score = 76.7 bits (189), Expect = 9e-15
 Identities = 102/412 (24%), Positives = 179/412 (43%), Gaps = 39/412 (9%)

Query: 35  PLI-ILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKS 93
           PLI  +   LV+AF   L  L   LR   ++  ++ GVL GP   G    F+        
Sbjct: 6   PLITTIVGGLVLAF--LLGALANRLRLSPLVGYLLAGVLAGPFTPG----FV------AD 53

Query: 94  MTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRST 153
            T+   LA +G++  +F VGL   +K +L     ++  ALA I L   LG+G S +L   
Sbjct: 54  QTLAPELAELGVILLMFGVGLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSSLL--- 110

Query: 154 VLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLA 213
              G +    +VF G++LS+ +  VL R L E +L+ T  GRIA+    V D+A  + L 
Sbjct: 111 ---GWSFGTGIVF-GLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMVLALV 166

Query: 214 LAIALSS---------SSSSLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKE 264
           L  AL+          ++  +     L   AAF+   + V R ++  +  R       +E
Sbjct: 167 LLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERV-AATGSRE 225

Query: 265 LYVCITLSMVLAASF-VTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLP 323
           L+    L++ L  +F   +  G+    GAF  G+++  E   +    E    +    F  
Sbjct: 226 LFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVL-AESELSHRAAEDSLPL-RDAFAV 283

Query: 324 LYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIM 383
           L+F + G+  +   I       +L  +++   FGK V    +  +   P+R +L +   +
Sbjct: 284 LFFVSVGMLFD-PMILIQQPLAVLATLLI-ILFGKSVAAFFIVRAFGHPVRTALTISASL 341

Query: 384 NTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPIL---MAIYKP 432
              G    I+  +G    +L +    +++  A+ +  +  P+L   +  Y+ 
Sbjct: 342 AQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAILSILL-NPLLFALLDRYQR 392

Length = 408

>gnl|CDD|235131 PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional

 Score = 72.7 bits (179), Expect = 3e-13
 Identities = 94/386 (24%), Positives = 170/386 (44%), Gaps = 56/386 (14%)

Query: 63  VIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIK--- 119
           V+  +I G ++GP  L    R +  V      ++L   A  G++  LF++GLELD +   
Sbjct: 32  VLGYLIAGCIIGPWGL----RLVTDV-----ESILH-FAEFGVVLMLFVIGLELDPQRLW 81

Query: 120 ----SILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITA 175
               SI   G   + +A  G+   F + +G  +           Q  LL+ +G++LS TA
Sbjct: 82  KLRRSIFGGGALQM-VACGGLLGLFCMLLGLRW-----------QVALLIGLGLALSSTA 129

Query: 176 FPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALA--IALSSSSSSLIAVWVLLS 233
             +  + + E  L+ T +GR A +     D+AA  L+A+   +A S +S++L A  +   
Sbjct: 130 --IAMQAMNERNLMVTQMGRSAFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSAL 187

Query: 234 GAAFVVFAV-----FVIRPVLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHA 288
             A  +  V     +V RP L  +AR       ++E++  + L +V     + + +G+  
Sbjct: 188 KVAGALALVVLGGRYVTRPALRFVARSG-----LREVFTAVALFLVFGFGLLMEEVGLSM 242

Query: 289 LFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLL 348
             GAF+ G+++     +   L   IE    GL L L+F A G+  +  T+       +L+
Sbjct: 243 ALGAFLAGVLL-ASSEYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLL-ENPLRILI 299

Query: 349 LVILNACFG----KIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLN 404
           L+      G    KI    ++A    VP ++      ++   G    +V    +   VL 
Sbjct: 300 LL-----LGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLE 354

Query: 405 DQAFAILVLMALFTTFITTPILMAIY 430
            +   +L L A+  +   TP+L+ + 
Sbjct: 355 PEWAKLLTL-AVALSMAATPLLLVLL 379

Length = 621

>gnl|CDD|179625 PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional

 Score = 67.4 bits (165), Expect = 2e-11
 Identities = 83/378 (21%), Positives = 174/378 (46%), Gaps = 49/378 (12%)

Query: 63  VIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSIL 122
           V+  ++ G+ +GP  LG         F      +L   + +G++F +F++GLEL+   + 
Sbjct: 32  VLGYLLAGIAIGPWGLG---------FISDVDEILH-FSELGVVFLMFIIGLELNPSKLW 81

Query: 123 RTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGAN--------QAPLLVFMGVSLSIT 174
           +  ++S+             G+G + VL S  +            QA ++  +G+++S T
Sbjct: 82  QL-RRSI------------FGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAMSST 128

Query: 175 AFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLI----AVWV 230
           A  +  +++ E  +  ++ G++  S     D+A    LAL   L+ S+            
Sbjct: 129 AMAL--QLMREKGMNRSESGQLGFSVLLFQDLAVIPALALVPLLAGSADEHFDWMKIGMK 186

Query: 231 LLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALF 290
           +L+ A  ++   +++RP+   +A        V+E++    L +VL ++   D +G+    
Sbjct: 187 VLAFAGMLIGGRYLLRPLFRFIAASG-----VREVFTAAALLLVLGSALFMDALGLSMAL 241

Query: 291 GAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLV 350
           G F+ G+++  E  +   L   IE    GL L L+F + G+  N+  +     W L+ +V
Sbjct: 242 GTFIAGVLL-AESEYRHELEIAIEPF-KGLLLGLFFISVGMALNLGVLYTHLLWVLISVV 299

Query: 351 ILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLN-DQAFA 409
           +L A  G ++   ++A    +   E +    +++  G    ++ +    +++L  DQ   
Sbjct: 300 VLVAVKGLVL--YLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMAL 357

Query: 410 ILVLMALFTTFITTPILM 427
           +LV++ L  + +TTP+LM
Sbjct: 358 LLVVVTL--SMMTTPLLM 373

Length = 601

>gnl|CDD|182633 PRK10669, PRK10669, putative cation:proton antiport protein; Provisional

 Score = 58.2 bits (141), Expect = 1e-08
 Identities = 80/292 (27%), Positives = 130/292 (44%), Gaps = 53/292 (18%)

Query: 30  LDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIG----GVLLGPSALGRSERFL 85
           + +A PLI     +V      LAF+L  L     I+ ++G    GVL GP   G      
Sbjct: 1   MHHATPLIT---TIVGGL--VLAFILGMLANRLRISPLVGYLLAGVLAGPFTPG------ 49

Query: 86  NTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGI--ALAGITLPFALG 143
              F   +    E LA +G++  +F VGL   +K ++    KS+ I  A+A I +   LG
Sbjct: 50  ---FVADTKLAPE-LAELGVILLMFGVGLHFSLKDLMAV--KSIAIPGAIAQIAVATLLG 103

Query: 144 IGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAAAV 203
           +  S VL  +++ G      +VF G+ LS  +  VL R L E +L+ +  G+IA+    V
Sbjct: 104 MALSAVLGWSLMTG------IVF-GLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIV 156

Query: 204 NDVA---AWVLL-ALAIALSSSSSSLIAV-----WVLLSGAAFVVFAVFVIRPVLS-LMA 253
            D+      VLL A+A  +         +       +    AF+   + V R ++  ++A
Sbjct: 157 EDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILA 216

Query: 254 RRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALF------GAFVVGIIM 299
           R +  G   +EL+    L++ L  +F     G   LF      GAF  G+++
Sbjct: 217 RSAATGS--RELFTLSVLALALGIAF-----GAVELFDVSFALGAFFAGMVL 261

Length = 558

>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]

 Score = 55.0 bits (133), Expect = 8e-08
 Identities = 55/272 (20%), Positives = 108/272 (39%), Gaps = 26/272 (9%)

Query: 36  LIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMT 95
           +++  + L++     ++ L   L  P +   ++ G+L GP  L         +       
Sbjct: 6   MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLN--------LISPDLEL 57

Query: 96  VLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLP-FALGIGTSFVLRSTV 154
             E    + L   LF  GLELD++ + R  +  L +AL  + +    +G+   ++L    
Sbjct: 58  DPELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGIP 117

Query: 155 LKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLAL 214
           L  A     L+  G  LS T  PV    + +   +   +  I    + +ND    VL  +
Sbjct: 118 LAAA----FLL--GAILSPTD-PVAVSPIFKRVRVPKRIRTILEGESLLNDGVGIVLFKV 170

Query: 215 AIAL-------SSSSSSLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYV 267
           A+A        S   + L+ +   L G    +   +++  +L  + RR         L  
Sbjct: 171 ALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSP---LLET 227

Query: 268 CITLSMVLAASFVTDTIGIHALFGAFVVGIIM 299
            +TL +  AA  + + +G+  +    V G+++
Sbjct: 228 LLTLLLAFAAYLLAEALGVSGILAVVVAGLVL 259

Length = 429

>gnl|CDD|233124 TIGR00773, NhaA, Na+/H+ antiporter NhaA

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 17/164 (10%)

Query: 211 LLALAIALSSSSSSLIAVWVL--LSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVC 268
           LLALAI     +  +IA++    LS AA +V AV +   VL+++ R       V+ L   
Sbjct: 149 LLALAIIDDLGAIVIIALFYTNDLSMAALLVAAVAIA--VLAVLNRCG-----VRRLGPY 201

Query: 269 ITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDM----VSGLFLPL 324
           + + ++L  + +    G+HA     ++G  +P +G      ++++E +    V+ L LPL
Sbjct: 202 MLVGVILWFAVLKS--GVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLILPL 259

Query: 325 Y-FAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAW 367
           + FA +G+     ++ G TS  L L +IL    GK +G  + +W
Sbjct: 260 FAFANAGVSLQGVSLNGLTSM-LPLGIILGLLIGKPLGIFLFSW 302

These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized [Transport and binding proteins, Cations and iron carrying compounds]. Length = 373

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	813
PLN03159	832	cation/H(+) antiporter 15; Provisional	100.0
KOG1650	769	consensus Predicted K+/H+-antiporter [Inorganic io	100.0
PRK03562	621	glutathione-regulated potassium-efflux system prot	100.0
PRK03659	601	glutathione-regulated potassium-efflux system prot	100.0
PRK10669	558	putative cation:proton antiport protein; Provision	100.0
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	100.0
PRK05326	562	potassium/proton antiporter; Reviewed	100.0
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	100.0
PF00999	380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	100.0
COG4651	408	RosB Kef-type K+ transport system, predicted NAD-b	100.0
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	99.96
TIGR00831	525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	99.96
COG0025	429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	99.94
TIGR00840	559	b_cpa1 sodium/hydrogen exchanger 3. This model is	99.93
COG3263	574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	99.91
KOG1965	575	consensus Sodium/hydrogen exchanger protein [Inorg	99.75
PRK14853	423	nhaA pH-dependent sodium/proton antiporter; Provis	99.74
KOG4505	467	consensus Na+/H+ antiporter [Inorganic ion transpo	99.7
PRK11175	305	universal stress protein UspE; Provisional	99.65
TIGR00773	373	NhaA Na+/H+ antiporter NhaA. These proteins are me	99.47
PRK14856	438	nhaA pH-dependent sodium/proton antiporter; Provis	99.23
cd01988	132	Na_H_Antiporter_C The C-terminal domain of a subfa	99.21
KOG1966	670	consensus Sodium/hydrogen exchanger protein [Inorg	99.19
PRK09560	389	nhaA pH-dependent sodium/proton antiporter; Review	99.11
PRK14855	423	nhaA pH-dependent sodium/proton antiporter; Provis	99.1
PRK14854	383	nhaA pH-dependent sodium/proton antiporter; Provis	99.07
PRK09561	388	nhaA pH-dependent sodium/proton antiporter; Review	99.06
COG3004	390	NhaA Na+/H+ antiporter [Inorganic ion transport an	98.85
PF06965	378	Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP	98.78
cd01989	146	STK_N The N-terminal domain of Eukaryotic Serine T	98.65
cd01989	146	STK_N The N-terminal domain of Eukaryotic Serine T	98.64
PRK15456	142	universal stress protein UspG; Provisional	98.55
PRK15005	144	universal stress protein F; Provisional	98.51
PF00582	140	Usp: Universal stress protein family; InterPro: IP	98.5
cd01987	124	USP_OKCHK USP domain is located between the N-term	98.49
cd01988	132	Na_H_Antiporter_C The C-terminal domain of a subfa	98.45
PRK15118	144	universal stress global response regulator UspA; P	98.42
PRK09982	142	universal stress protein UspD; Provisional	98.4
PRK15005	144	universal stress protein F; Provisional	98.34
PRK09982	142	universal stress protein UspD; Provisional	98.33
PF00582	140	Usp: Universal stress protein family; InterPro: IP	98.3
cd00293	130	USP_Like Usp: Universal stress protein family. The	98.29
cd01987	124	USP_OKCHK USP domain is located between the N-term	98.2
PRK10116	142	universal stress protein UspC; Provisional	98.19
PRK10116	142	universal stress protein UspC; Provisional	98.18
PRK11175	305	universal stress protein UspE; Provisional	98.13
PRK15456	142	universal stress protein UspG; Provisional	98.1
PRK15118	144	universal stress global response regulator UspA; P	98.03
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	97.97
cd00293	130	USP_Like Usp: Universal stress protein family. The	97.97
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	97.9
PF03812	314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	97.56
TIGR00698	335	conserved hypothetical integral membrane protein.	97.4
PF03616	368	Glt_symporter: Sodium/glutamate symporter; InterPr	97.38
COG0385	319	Predicted Na+-dependent transporter [General funct	97.35
COG0786	404	GltS Na+/glutamate symporter [Amino acid transport	97.18
PRK12652	357	putative monovalent cation/H+ antiporter subunit E	97.18
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	97.12
TIGR00793	314	kdgT 2-keto-3-deoxygluconate transporter. This fam	97.11
COG0589	154	UspA Universal stress protein UspA and related nuc	97.09
COG0798	342	ACR3 Arsenite efflux pump ACR3 and related permeas	97.04
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	96.98
TIGR00210	398	gltS sodium--glutamate symport carrier (gltS).	96.86
PF03390	414	2HCT: 2-hydroxycarboxylate transporter family; Int	96.83
PRK12652	357	putative monovalent cation/H+ antiporter subunit E	96.73
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.67
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	96.61
COG0589	154	UspA Universal stress protein UspA and related nuc	96.49
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	96.46
PRK05274	326	2-keto-3-deoxygluconate permease; Provisional	96.42
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.37
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	96.35
COG3493	438	CitS Na+/citrate symporter [Energy production and	96.3
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	96.27
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	96.22
PRK10669	558	putative cation:proton antiport protein; Provision	96.17
COG2855	334	Predicted membrane protein [Function unknown]	96.03
PF03956	191	DUF340: Membrane protein of unknown function (DUF3	95.88
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	95.88
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	95.68
TIGR00841	286	bass bile acid transporter. Functionally character	95.68
PRK05326	562	potassium/proton antiporter; Reviewed	95.55
TIGR00783	347	ccs citrate carrier protein, CCS family. These pro	95.29
PF06826	169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	94.87
TIGR00698	335	conserved hypothetical integral membrane protein.	94.81
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	94.68
TIGR03802	562	Asp_Ala_antiprt aspartate-alanine antiporter. All	94.59
PRK03818	552	putative transporter; Validated	94.54
PLN03159	832	cation/H(+) antiporter 15; Provisional	94.39
COG2855	334	Predicted membrane protein [Function unknown]	93.55
PRK04972	558	putative transporter; Provisional	93.21
PRK10490	895	sensor protein KdpD; Provisional	92.98
TIGR01625	154	YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplicati	92.9
TIGR00831	525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	92.84
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	92.08
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	91.58
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	91.58
TIGR03802	562	Asp_Ala_antiprt aspartate-alanine antiporter. All	91.45
PF03616	368	Glt_symporter: Sodium/glutamate symporter; InterPr	91.02
COG2985	544	Predicted permease [General function prediction on	89.81
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	89.81
PRK04288	232	antiholin-like protein LrgB; Provisional	89.49
TIGR00210	398	gltS sodium--glutamate symport carrier (gltS).	89.04
PRK04972	558	putative transporter; Provisional	87.39
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	87.19
TIGR00808	254	malonate_madM malonate transporter, MadM subunit.	87.12
PRK03818	552	putative transporter; Validated	86.91
PRK10490	895	sensor protein KdpD; Provisional	86.76
PF03956	191	DUF340: Membrane protein of unknown function (DUF3	85.86
COG2205	890	KdpD Osmosensitive K+ channel histidine kinase [Si	85.4
COG4651	408	RosB Kef-type K+ transport system, predicted NAD-b	84.95
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	84.56
PRK10711	231	hypothetical protein; Provisional	84.55
PF03977	360	OAD_beta: Na+-transporting oxaloacetate decarboxyl	83.99
COG0025	429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	83.64
TIGR00659	226	conserved hypothetical protein TIGR00659. Members	83.46
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	83.46
TIGR03136	399	malonate_biotin Na+-transporting malonate decarbox	82.65
TIGR02432	189	lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t	82.37
PF00999	380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	82.03
COG0786	404	GltS Na+/glutamate symporter [Amino acid transport	80.08

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=100.00  E-value=1.2e-150  Score=1349.61  Aligned_cols=766  Identities=52%  Similarity=0.924  Sum_probs=690.5

Q ss_pred             CCCCCCccCCCCcccCCCCCCccHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccC
Q 003517           11 ACPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFP   90 (813)
Q Consensus        11 ~c~~~~~~~~~g~~~g~~~~~~~l~~~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp   90 (813)
                      +|+.+.+.+|+|+|+|+||++|++|++++|+++++++++++++++||+|||+++|||++|+++||+++|+++.+.+.+||
T Consensus        18 ~c~~~~~~~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp   97 (832)
T PLN03159         18 VCYAPMMITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFP   97 (832)
T ss_pred             ccccCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCC
Confidence            69976688999999999999999999999999999999999999999999999999999999999999999888889999


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHH
Q 003517           91 KKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVS  170 (813)
Q Consensus        91 ~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~  170 (813)
                      .++.+.+++++++|++++||++|+|+|++.+||++|+++.+|+.++++|+++|++++++++.. ........+++++|++
T Consensus        98 ~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~-~~~~~~~~~~l~~g~a  176 (832)
T PLN03159         98 LRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQV-SRNVHQGTFILFLGVA  176 (832)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccchhHHHHHHHHH
Confidence            888889999999999999999999999999999999999999999999999999888877432 1112223457899999


Q ss_pred             HhhccHHHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003517          171 LSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSS-SSSLIAVWVLLSGAAFVVFAVFVIRPVL  249 (813)
Q Consensus       171 ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~v~~~~~  249 (813)
                      +|.||+|+++++|+|+|+++++.||+++++++++|+++|++++++..+... ......+|.++..+++++++.+++||++
T Consensus       177 lS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~~~~~v~r~~~  256 (832)
T PLN03159        177 LSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGI  256 (832)
T ss_pred             HHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999888766543 2234456777777888888889999999


Q ss_pred             HHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHh
Q 003517          250 SLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAAS  329 (813)
Q Consensus       250 ~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~  329 (813)
                      .|+.|+++++++.++.++.++++++++++++++.+|+|+++|||++|+++|+ +|+++.+.+|+++++.++|+|+||+++
T Consensus       257 ~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~lflPlFFv~v  335 (832)
T PLN03159        257 WWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSGLLLPLFFAIS  335 (832)
T ss_pred             HHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999888888899999999999999999999999999999999999997 789999999999999999999999999


Q ss_pred             ccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHH
Q 003517          330 GLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFA  409 (813)
Q Consensus       330 G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~  409 (813)
                      |+++|+..+.+...|+.+++++++++++|+++++++++++|+|+||++.+|++||+||++++++++++.+.|+++++.|+
T Consensus       336 Gl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~  415 (832)
T PLN03159        336 GLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFA  415 (832)
T ss_pred             hheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhh
Confidence            99999988876445666677778889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHhhcccccCCCCccccccCCCCCccceeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEE
Q 003517          410 ILVLMALFTTFITTPILMAIYKPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMH  489 (813)
Q Consensus       410 ~lvl~~vv~t~i~~plv~~l~~~~~~~~~~~~~~i~~~~~~~elriLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~Lh  489 (813)
                      +++++++++|.+++|++.++|+|+||+..|++|++|+.++++|+|||+|+|++++++++++|++++++++++|+++|++|
T Consensus       416 ~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lh  495 (832)
T PLN03159        416 VMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLH  495 (832)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHHhhhc-CceEEEeeEeeccCCChHHHHHHHHHhcCCcEEE
Q 003517          490 LMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQL-SSVTVRPMTAISALSSIHEDICASAHRKRAALIL  568 (813)
Q Consensus       490 Lvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~-~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlII  568 (813)
                      |+|+++|+++.+++|+.++++.+..++...++|+++++|++|++. ++++|+++|++|||++||+|||++|+|+++++||
T Consensus       496 LveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIi  575 (832)
T PLN03159        496 LVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLII  575 (832)
T ss_pred             EEeecCCCccceeeeecccccccccccccccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEE
Confidence            999999999999999876544332222235589999999999986 5899999999999999999999999999999999


Q ss_pred             ecCCcccccCCcccccccchHHHHHHHhccCCCceEEEecCCCCCCCcccccccceeEEEecCCCcChHHHHHHHHHHhc
Q 003517          569 LPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVDRGLGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAE  648 (813)
Q Consensus       569 lp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgIlvdrg~~~~~~~~~~~~~~~i~v~f~GG~ddreAL~~a~rma~  648 (813)
                      +||||+|+.||++++.++.+|.+|+|||++||||||||||||..+..+.......+||+++|+|||||||||+||+|||+
T Consensus       576 lpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~~~~~~~v~~~F~GG~DDREALa~a~rma~  655 (832)
T PLN03159        576 IPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQVSHHVAVLFFGGPDDREALAYAWRMSE  655 (832)
T ss_pred             ECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccccccceeEEEEecCCcchHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999976543334455678999999999999999999999999


Q ss_pred             CCCeEEEEEEeecCCCCCcccC-----CCCCCcccccccCCCCccccHHHHHHHHHhhhccCCCCeEEEEEEecChHHHH
Q 003517          649 HPGIKLTVVKFVAPKGTSLTFG-----SDAPGVISIDLLRGDNDQVGDDAIISDFKSIASKNQESITLEERLVESSQEIA  723 (813)
Q Consensus       649 ~~~v~ltvvr~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~y~e~~v~~~~e~~  723 (813)
                      ||++++||+||++.++...+..     .+++ ......++++.|+++||++++|||.++ ..+++|.|+||+|+|+.||+
T Consensus       656 ~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~D~~~~~ef~~~~-~~~~~v~y~E~~V~~~~e~~  733 (832)
T PLN03159        656 HPGITLTVMRFIPGEDAAPTASQPASSPSDP-RIPTVETDGKKERQLDEEYINEFRARN-AGNESIVYTEKVVSNGEETV  733 (832)
T ss_pred             CCCeEEEEEEEEccccccccccccccccccc-ccccccccchhHHHHHHHHHHHHHHhc-CCCCceEEEEEecCCHHHHH
Confidence            9999999999996533221000     0000 011111224568899999999999998 77889999999999999999


Q ss_pred             HHHhccCC-CcEEEEccCC----C-CCCCCCCccccccCccccchhhhhcCCCCCcccEEEEeecc
Q 003517          724 GVLKSMNK-CNLFLVGRMA----P-TAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQQYN  783 (813)
Q Consensus       724 ~~i~~~~~-~DLviVGr~~----~-~~gl~~w~~~e~~~eLG~igd~las~d~~~~~SvLvvqq~~  783 (813)
                      .++|++++ |||+||||+|    + ++||+||  +| |||||+|||+|||+||.+++||||||||.
T Consensus       734 ~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w--~e-~pELG~iGD~LaS~d~~~~~SVLVvQQ~~  796 (832)
T PLN03159        734 AAIRSMDSAHDLFIVGRGQGMISPLTAGLTDW--SE-CPELGAIGDLLASSDFAATVSVLVVQQYV  796 (832)
T ss_pred             HHHHHhhccCcEEEEecCCCCCcchhcccccc--cc-CCccchhhhHHhcCCCCCceeEEEEEeec
Confidence            99999998 9999999987    2 8899999  99 99999999999999999999999999998

>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.5e-122  Score=1087.90  Aligned_cols=750  Identities=49%  Similarity=0.806  Sum_probs=680.7

Q ss_pred             CCccCCCCcccCCCCCCccHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCch
Q 003517           15 PMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSM   94 (813)
Q Consensus        15 ~~~~~~~g~~~g~~~~~~~l~~~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~   94 (813)
                      +++..+.|.|+|+||++|++|++++|+++++++++++++++||+|||++++++++||++||+.+|+++.+.+.+||.++.
T Consensus         2 ~~~~~~~g~~~~~~~~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~   81 (769)
T KOG1650|consen    2 WVKATSNGVFPGVNPLKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSM   81 (769)
T ss_pred             CCccccCCcccCCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchH
Confidence            45668899999999999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCh---hHHHHHHHHH
Q 003517           95 TVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLK-GANQ---APLLVFMGVS  170 (813)
Q Consensus        95 ~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~-~~~~---~~~~l~lg~~  170 (813)
                      ..+++++.+|+.+++|+.|+|+|.+.++|++|++..+|+.++++|++.|.++...+...... .+..   ..+..++..+
T Consensus        82 ~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (769)
T KOG1650|consen   82 IVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSA  161 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888777433311 1111   0145788899


Q ss_pred             HhhccHHHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHHHHHHHH
Q 003517          171 LSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSS--SSLIAVWVLLSGAAFVVFAVFVIRPV  248 (813)
Q Consensus       171 ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~v~~~~  248 (813)
                      +|.||||+++++|.|+|++++++||+++++++++|+.+|.++++..++....  ++....|.+...+++++++.++++|.
T Consensus       162 ~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~p~  241 (769)
T KOG1650|consen  162 QSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVVRPL  241 (769)
T ss_pred             hhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeehhhh
Confidence            9999999999999999999999999999999999999999988887766552  35567888888899999999999999


Q ss_pred             HHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHC-hhHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHH
Q 003517          249 LSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIG-IHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFA  327 (813)
Q Consensus       249 ~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g-~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~  327 (813)
                      +.|+.||+|++++.++.|+..++..++.++.+++.++ +|+++|||+.|+++|+++|+++.+.+|+|++.+++|+|+||+
T Consensus       242 ~~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~  321 (769)
T KOG1650|consen  242 MKWIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFA  321 (769)
T ss_pred             HHHHhhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998 899999999999999999999999999999999999999999


Q ss_pred             HhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHH
Q 003517          328 ASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQA  407 (813)
Q Consensus       328 ~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~  407 (813)
                      .+|+++|+..+..   |......+...+++|++++..++.++|+|+||++.+|++|++||.++++.++.+.+.++++++.
T Consensus       322 ~~G~k~di~~i~~---~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~  398 (769)
T KOG1650|consen  322 ISGLKTDISRINK---WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEG  398 (769)
T ss_pred             hhccceeHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccch
Confidence            9999999998875   7777777888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhhcccccCCCCccccccCCCCCccceeEEEeecCCChhhHHHHHHhhccCCCCCceEEE
Q 003517          408 FAILVLMALFTTFITTPILMAIYKPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRGRKRGKLCLYA  487 (813)
Q Consensus       408 ~~~lvl~~vv~t~i~~plv~~l~~~~~~~~~~~~~~i~~~~~~~elriLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~  487 (813)
                      |++++++++++|.+++|+++.+|+|.+++..|++|++|+.++++++|++.|+|++++++++++++|++.+++++|+++|+
T Consensus       399 f~~~vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~~~~p~~v~~  478 (769)
T KOG1650|consen  399 FTVMVLMALVSTFITPPLLMFLYDPTRKYHGYKKRGIQHLKPNSELRILTCLHGPENISGIINLLELSSGSLESPLSVYA  478 (769)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHhcchhhhcCceEeehhhhcCCCCceEEEEEecCCCcchHHHHHHHHcCCCCCCCcceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988777999999


Q ss_pred             EEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHHhhhc--CceEEEeeEeeccCCChHHHHHHHHHhcCCc
Q 003517          488 MHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQL--SSVTVRPMTAISALSSIHEDICASAHRKRAA  565 (813)
Q Consensus       488 LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~--~~v~v~~~~~vs~~~~m~~dI~~~A~e~~ad  565 (813)
                      +|++|+.+|+.+.+++|+.++++...  .....++++..+|+.|++.  ..+.++++|+++|+.+||+|||.+|.+++++
T Consensus       479 lhlveL~~~~~~~li~h~~~~~~~~~--~~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~~~~~  556 (769)
T KOG1650|consen  479 LHLVELVGRATPLLISHKLRKNGRVE--SRSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTLALDKGVS  556 (769)
T ss_pred             eeeeecccccchhhhhhhhccccccc--cccccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHHHHhhCCc
Confidence            99999999999999999887764221  1124567999999999994  5799999999999999999999999999999


Q ss_pred             EEEecCCcccccCCcccccccchHHHHHHHhccCCCceEEEecCCCCCCCcccccccceeEEEecCCCcChHHHHHHHHH
Q 003517          566 LILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVDRGLGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMR  645 (813)
Q Consensus       566 lIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgIlvdrg~~~~~~~~~~~~~~~i~v~f~GG~ddreAL~~a~r  645 (813)
                      +|++||||+|+.++.++..+..+|.+|++|+++|||||||+||||.......+.....++|+++|+||+||||||+|+.|
T Consensus       557 liilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~~~~~~~~~~~~~~~v~~lF~GG~DDrEALa~~~r  636 (769)
T KOG1650|consen  557 LIILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRGLRRSGVTQKRGSSYKVVVLFLGGKDDREALALAKR  636 (769)
T ss_pred             EEEeehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecCcccccceecccceeEEEEEecCChhhHHHHHHHHH
Confidence            99999999999666899999999999999999999999999999821111112233678999999999999999999999


Q ss_pred             HhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCccccHHHHHHHH-HhhhccCCCCeEEE-EEEecChHHHH
Q 003517          646 MAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDF-KSIASKNQESITLE-ERLVESSQEIA  723 (813)
Q Consensus       646 ma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~-~~~~~~~~~~v~y~-e~~v~~~~e~~  723 (813)
                      |++||++++||+||+++++..+...            ..++++.+|++..+++ +..+ ..+.++.|. ||.++++.||.
T Consensus       637 m~~~~~v~lTVirf~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~~-~~~~~i~~~~ek~v~~~~et~  703 (769)
T KOG1650|consen  637 MAENPRVTLTVIRFFPDESKYNRKV------------LVEVGKMLDQEGLEDFVKSTR-ESNLDIIYAEEKIVLNGAETT  703 (769)
T ss_pred             HhhCCceEEEEEEeeccchhhcccc------------cchhhhhhhhhHHHHHHHHhh-hchhhhhhhhHHHHhcchhHH
Confidence            9999999999999997655332100            1467888899988888 6554 566678888 69999999999


Q ss_pred             HHHhccCC-CcEEEEccCC----C-CCCCCCCccccccCccccchhhhhcCCCCCcccEEEEeeccCC
Q 003517          724 GVLKSMNK-CNLFLVGRMA----P-TAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQQYNPT  785 (813)
Q Consensus       724 ~~i~~~~~-~DLviVGr~~----~-~~gl~~w~~~e~~~eLG~igd~las~d~~~~~SvLvvqq~~~~  785 (813)
                      .+++++++ |||++|||++    + ++|+++|  +| |||||+|||.|+|+||.+++||||+|||...
T Consensus       704 ~~~~~~~~~ydL~ivGr~~~~~~~~t~gl~~W--~e-~pELg~IGd~las~~~~~~~svlvvqq~~~~  768 (769)
T KOG1650|consen  704 ALLRSITEDYDLFIVGRSHGMLSEATGGLSEW--SE-CPELGVIGDLLASSDFSSKVSVLVVQQQLYS  768 (769)
T ss_pred             HHHHHhccccceEEEecccccccchhcCchhc--cc-CccccccCccccccccCccceEEEEEeeecC
Confidence            99999999 9999999998    2 8999999  99 9999999999999999999999999999753

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=100.00  E-value=4.1e-48  Score=453.76  Aligned_cols=400  Identities=21%  Similarity=0.335  Sum_probs=324.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhc
Q 003517           36 LIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLE  115 (813)
Q Consensus        36 ~~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle  115 (813)
                      .++.++.+++.++.++..++||+|+|+++|||++|+++||+++|+++          ..+.++.++++|++++||.+|+|
T Consensus         5 ~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~----------~~~~i~~laelGvv~LlF~iGLE   74 (621)
T PRK03562          5 HTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT----------DVESILHFAEFGVVLMLFVIGLE   74 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC----------CHHHHHHHHHHHHHHHHHHHHhC
Confidence            47899999999999999999999999999999999999999999754          23568899999999999999999


Q ss_pred             cChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHH
Q 003517          116 LDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGR  195 (813)
Q Consensus       116 ~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~  195 (813)
                      +|++.+|+.+|+++.+|..++++|++++++++++++.      ++ ..++++|.+++.||++++.++|+|+|+++|+.||
T Consensus        75 l~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~------~~-~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~  147 (621)
T PRK03562         75 LDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLLGL------RW-QVALLIGLGLALSSTAIAMQAMNERNLMVTQMGR  147 (621)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CH-HHHHHHHHHHHHHHHHHHHHHHHHhccccCchHH
Confidence            9999999999999999999999999888777666532      22 4578899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC-Cc-hhHHHH-HHHH----HHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHH
Q 003517          196 IAMSAAAVNDVAAWVLLALAIALSSS-SS-SLIAVW-VLLS----GAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVC  268 (813)
Q Consensus       196 l~ls~a~i~D~~~~~ll~l~~~~~~~-~~-~~~~~~-~~~~----~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~  268 (813)
                      .+++.++++|+++|++++++..+... .+ .....| ..+.    .++++++..++.+|+++|+.|+.     .+|.++.
T Consensus       148 ~~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~-----~~e~~~~  222 (621)
T PRK03562        148 SAFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARSG-----LREVFTA  222 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CchHHHH
Confidence            99999999999999999887655432 11 111222 1221    22222333455667777766543     4677888


Q ss_pred             HHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHH
Q 003517          269 ITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLL  348 (813)
Q Consensus       269 ~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~  348 (813)
                      .+++++++++++++.+|+|+++|||++|+++++ ++++++++++++++ .++|+|+||+++|+++|+..+..  .|+.++
T Consensus       223 ~~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~-~~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l~~--~~~~il  298 (621)
T PRK03562        223 VALFLVFGFGLLMEEVGLSMALGAFLAGVLLAS-SEYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLLE--NPLRIL  298 (621)
T ss_pred             HHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcC-CccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHH--HHHHHH
Confidence            889999999999999999999999999999996 88999999999999 79999999999999999988765  344445


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHhHHHHHHH
Q 003517          349 LVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMA  428 (813)
Q Consensus       349 ~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~  428 (813)
                      .++++.+++|++++++.++++|+++++++.+|++|+++|+++++++.++.+.++++++.++.+++++ +.|++.+|++..
T Consensus       299 ~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v-~lS~~~tP~l~~  377 (621)
T PRK03562        299 ILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAV-ALSMAATPLLLV  377 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            5566678999999999999999999999999999999999999999999999999999999998754 557777777776


Q ss_pred             hhcccc-cCCCCccccccCCCCCccceeEEEeecCCC
Q 003517          429 IYKPAR-KGVPYKHRTIQRKDTETEFRILACFHSTRN  464 (813)
Q Consensus       429 l~~~~~-~~~~~~~~~i~~~~~~~elriLv~v~~~~~  464 (813)
                      +|++.. ++...+ +. ++..++.+-|+++|.++.-.
T Consensus       378 ~~~~~~~~~~~~~-~~-~~~~~~~~~~vII~G~Gr~G  412 (621)
T PRK03562        378 LLDRLEQSRTEEA-RE-ADEIDEQQPRVIIAGFGRFG  412 (621)
T ss_pred             hhhHHHHHHhhhc-cc-ccccccccCcEEEEecChHH
Confidence            665532 111111 11 11111224688888877644

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=100.00  E-value=3.8e-47  Score=445.03  Aligned_cols=401  Identities=18%  Similarity=0.328  Sum_probs=321.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 003517           37 IILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLEL  116 (813)
Q Consensus        37 ~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~  116 (813)
                      ++.++.+++.++.+...+++|+|+|+++||+++|+++||+++|+++.          .+.+..++++|++++||.+|+|+
T Consensus         6 ~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~----------~~~i~~laelGvv~LLF~iGLel   75 (601)
T PRK03659          6 LLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD----------VDEILHFSELGVVFLMFIIGLEL   75 (601)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc----------HHHHHHHHHHHHHHHHHHHHhcC
Confidence            56788999999999999999999999999999999999999997642          35578999999999999999999


Q ss_pred             ChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHHH
Q 003517          117 DIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRI  196 (813)
Q Consensus       117 d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l  196 (813)
                      |++.+|+.+|+++.+|..++++|+++++.+.++++      +++ ..++++|++++.||++++.++|+|+|+.+++.||+
T Consensus        76 ~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g------~~~-~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~  148 (601)
T PRK03659         76 NPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLTD------FSW-QAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQL  148 (601)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cCH-HHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHH
Confidence            99999999999999999999999887766554442      222 45788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCch---h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHH
Q 003517          197 AMSAAAVNDVAAWVLLALAIALSSSSSS---L-IAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCITLS  272 (813)
Q Consensus       197 ~ls~a~i~D~~~~~ll~l~~~~~~~~~~---~-~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~  272 (813)
                      +++..+++|+.++++++++..+......   . ...+.++..++++++..++.+|+++|+.+.     +.+|.++..+++
T Consensus       149 ~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~l~  223 (601)
T PRK03659        149 GFSVLLFQDLAVIPALALVPLLAGSADEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAAS-----GVREVFTAAALL  223 (601)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHH
Confidence            9999999999999999877655443211   1 111112222222233345566666666543     246788888899


Q ss_pred             HHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHHH
Q 003517          273 MVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVIL  352 (813)
Q Consensus       273 ~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~  352 (813)
                      ++++++++++.+|+|+++|||++|+++++ +++++++.++++++ .++|+|+||+++|+++|+..+.+  .|+.++.+++
T Consensus       224 ~vl~~a~l~~~~Gls~~LGAFlaGl~l~~-s~~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l~~--~~~~il~~~~  299 (601)
T PRK03659        224 LVLGSALFMDALGLSMALGTFIAGVLLAE-SEYRHELEIAIEPF-KGLLLGLFFISVGMALNLGVLYT--HLLWVLISVV  299 (601)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHhcC-CchHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHHH--hHHHHHHHHH
Confidence            99999999999999999999999999997 78999999999999 79999999999999999988865  4555556667


Q ss_pred             HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHhHHHHHHHhhcc
Q 003517          353 NACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIYKP  432 (813)
Q Consensus       353 ~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~l~~~  432 (813)
                      +.+++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++ +.|++.+|++..+++|
T Consensus       300 ~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v-~ls~~~tP~l~~~~~~  378 (601)
T PRK03659        300 VLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVV-TLSMMTTPLLMKLIDK  378 (601)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHhHH
Confidence            778999999999999999999999999999999999999999999999999999999995555 4556778888777665


Q ss_pred             --cccCCCCccccccCCCCCccceeEEEeecCCC
Q 003517          433 --ARKGVPYKHRTIQRKDTETEFRILACFHSTRN  464 (813)
Q Consensus       433 --~~~~~~~~~~~i~~~~~~~elriLv~v~~~~~  464 (813)
                        .+++.........+...+.+-++++|.+++-.
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~vII~G~Gr~G  412 (601)
T PRK03659        379 WLARRLNGPEEEDEKPWVEDDKPQVIIVGFGRFG  412 (601)
T ss_pred             HHHHhhccccccccccccccccCCEEEecCchHH
Confidence              23321110100001111234688888776643

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=100.00  E-value=6.7e-47  Score=442.28  Aligned_cols=414  Identities=19%  Similarity=0.262  Sum_probs=332.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 003517           37 IILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLEL  116 (813)
Q Consensus        37 ~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~  116 (813)
                      ++..+.++++++.+++.++||+|+|++++||++|+++||+++|...          ..+.++.++++|++++||.+|+|+
T Consensus         7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~----------~~~~~~~la~lGli~llF~~Gle~   76 (558)
T PRK10669          7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVA----------DTKLAPELAELGVILLMFGVGLHF   76 (558)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCcccccccc----------chHHHHHHHHHHHHHHHHHhHhcC
Confidence            3456788899999999999999999999999999999999999743          235688999999999999999999


Q ss_pred             ChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHHH
Q 003517          117 DIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRI  196 (813)
Q Consensus       117 d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l  196 (813)
                      |++.+|+.++..+..+..++++|+++++++++.++      ++. ..++++|+++|.||++++.++|+|+|+++++.||+
T Consensus        77 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~  149 (558)
T PRK10669         77 SLKDLMAVKSIAIPGAIAQIAVATLLGMALSAVLG------WSL-MTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQI  149 (558)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhC------CCH-HHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHH
Confidence            99999999888877788888888888877666553      333 46788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC---C--chh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHH
Q 003517          197 AMSAAAVNDVAAWVLLALAIALSSS---S--SSL----IAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYV  267 (813)
Q Consensus       197 ~ls~a~i~D~~~~~ll~l~~~~~~~---~--~~~----~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~  267 (813)
                      ++++++++|+.+|+++.+...+...   +  +..    ...+.++..++++++..++.|++..|+.++.++.+ .+|.++
T Consensus       150 ~l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~  228 (558)
T PRK10669        150 AIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SRELFT  228 (558)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHH
Confidence            9999999999999998876554321   1  111    12344455666777778888999999998886544 577888


Q ss_pred             HHHHHHHHHHHHH-HHHHChhHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHH
Q 003517          268 CITLSMVLAASFV-TDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGL  346 (813)
Q Consensus       268 ~~~l~~~l~~~~~-ae~~g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~  346 (813)
                      +.++++++++++. ++.+|+|+++|||++|+++|+ +++++++.++..++ .++|+|+||+++|+++|+..+.+  .+..
T Consensus       229 l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~-~~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~~--~~~~  304 (558)
T PRK10669        229 LSVLALALGIAFGAVELFDVSFALGAFFAGMVLNE-SELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILIQ--QPLA  304 (558)
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhC-ChhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHHH--HHHH
Confidence            8788888888764 699999999999999999996 77888888888887 78999999999999999988765  2334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHhHHHHH
Q 003517          347 LLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPIL  426 (813)
Q Consensus       347 ~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv  426 (813)
                      ...++++.+++|++++++.++++|+++|+++.+|++|++||+++++++..+.+.|+++++.|++++++++++++++|.+.
T Consensus       305 ~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~  384 (558)
T PRK10669        305 VLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLF  384 (558)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556677899999999999999999999999999999999999999999999999999999999888888777777777


Q ss_pred             HHhhcccccCCCCccc----cccC---CCCCccceeEEEeecCCChhhHHHHHHhhc
Q 003517          427 MAIYKPARKGVPYKHR----TIQR---KDTETEFRILACFHSTRNIPSLINLVESSR  476 (813)
Q Consensus       427 ~~l~~~~~~~~~~~~~----~i~~---~~~~~elriLv~v~~~~~v~~li~Ll~~~~  476 (813)
                      ++..+..++..+.+.+    ..++   .+++-+-|+++|.+++-.    -++++.+.
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hiiI~G~G~~G----~~la~~L~  437 (558)
T PRK10669        385 TLLERYLAKTETLEEQTLEEAIEEEKQIPVDICNHALLVGYGRVG----SLLGEKLL  437 (558)
T ss_pred             HHhhHHHHHhhhccccccccccccccccccccCCCEEEECCChHH----HHHHHHHH
Confidence            6655443322111111    0111   112234688888777644    23455554

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.4e-44  Score=400.39  Aligned_cols=379  Identities=29%  Similarity=0.527  Sum_probs=316.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhc
Q 003517           36 LIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLE  115 (813)
Q Consensus        36 ~~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle  115 (813)
                      ..+.|+.++++++.+.++++||+|+|+++||+++|+++||.+++..         .+..+.++.++++|++++||.+|+|
T Consensus         6 ~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~---------~~~~~~i~~laelGvi~LlF~~GLE   76 (397)
T COG0475           6 LILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLI---------IESSEIIELLAELGVVFLLFLIGLE   76 (397)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCccccccc---------CCchHHHHHHHHHhHHHHHHHHHHC
Confidence            4678999999999999999999999999999999999999554432         3456889999999999999999999


Q ss_pred             cChhHHHhcchh-hHHHHHHHHHHHHHHHHHHHHH-HHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChh
Q 003517          116 LDIKSILRTGKK-SLGIALAGITLPFALGIGTSFV-LRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDL  193 (813)
Q Consensus       116 ~d~~~l~~~~~~-~~~ia~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~  193 (813)
                      +|++.+||++|+ ....+..++..|+.++....+. ++.    ++   ..++++|.+++.||.++++++++|+|+.+++.
T Consensus        77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~----~~---~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~  149 (397)
T COG0475          77 FDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGL----SL---IAALFLGAALALSSTAIVLKILMELGLLKTRE  149 (397)
T ss_pred             cCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhcc----Ch---HHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence            999999999999 8888888888888877654443 221    22   45799999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHH
Q 003517          194 GRIAMSAAAVNDVAAWVLLALAIALSSSSSSL--IAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCITL  271 (813)
Q Consensus       194 g~l~ls~a~i~D~~~~~ll~l~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l  271 (813)
                      |++++++++++|+.++++++++..+..+++..  ......+...++.++..+..+++.+|+.|+..+. +.+|..+..++
T Consensus       150 g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~-~~~e~~~~~~l  228 (397)
T COG0475         150 GQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT-ESSELFILFVL  228 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHH
Confidence            99999999999999999999988876552221  1233344444555555454566666666665322 34688899999


Q ss_pred             HHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCch-HHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHH
Q 003517          272 SMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFA-GVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLV  350 (813)
Q Consensus       272 ~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~-~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~i  350 (813)
                      ++++++++++|.+|+|+++|||++|+++++ .+.+ ++++++++++.+++|+|+||+.+|+++|+..+.+  .+..+.++
T Consensus       229 ~i~l~~a~l~e~~gls~ilGAFlaGl~ls~-~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~--~~~~~l~~  305 (397)
T COG0475         229 LLVLGAAYLAELLGLSMILGAFLAGLLLSE-SEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLE--NLLLILLL  305 (397)
T ss_pred             HHHHHHHHHHHHhChhHHHHHHHHHHHhcc-cccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhc--cHHHHHHH
Confidence            999999999999999999999999999997 5666 7999999999877999999999999999999987  34446677


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHhHHHHHHHhh
Q 003517          351 ILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIY  430 (813)
Q Consensus       351 i~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~l~  430 (813)
                      +.+..++|.+++++.++.+|.+.|++...|+.+.++|+++++.++.+.. +.++++.+...+.+++++|.+.+++.+.++
T Consensus       306 ~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~~  384 (397)
T COG0475         306 VALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPILL  384 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7778899999999999999999999999999999999999999988876 578888888888887777777777777666


Q ss_pred             ccccc
Q 003517          431 KPARK  435 (813)
Q Consensus       431 ~~~~~  435 (813)
                      ++..+
T Consensus       385 ~~~~~  389 (397)
T COG0475         385 KRLLK  389 (397)
T ss_pred             HHhhc
Confidence            55433

>PRK05326 potassium/proton antiporter; Reviewed

Probab=100.00  E-value=4.5e-39  Score=376.10  Aligned_cols=382  Identities=17%  Similarity=0.176  Sum_probs=313.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhh
Q 003517           35 PLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGL  114 (813)
Q Consensus        35 ~~~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gl  114 (813)
                      ..++++++++++++.+++.+++|+++|.+++++++|+++||+++|.+..        .+.+..+.++++|++++||..|+
T Consensus         5 ~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~--------~~~~~~~~i~~l~L~~iLF~~Gl   76 (562)
T PRK05326          5 NSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQF--------DNYPLAYLVGNLALAVILFDGGL   76 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCccc--------CcHHHHHHHHHHHHHHHHHcCcc
Confidence            3578889999999999999999999999999999999999999986431        23467899999999999999999


Q ss_pred             ccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCc-cCChh
Q 003517          115 ELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKL-LTTDL  193 (813)
Q Consensus       115 e~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l-~~s~~  193 (813)
                      |+|++.+|+++++++.+++.++++|+++....++++.     ++++ ..++++|+++++||++++.++++|+|+ +++++
T Consensus        77 ~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~-----g~~~-~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v  150 (562)
T PRK05326         77 RTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLL-----GLDW-LEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERV  150 (562)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCH-HHHHHHhhhhccCchHHHHHHHhccCCCcchhH
Confidence            9999999999999999999999999887554443332     2233 567999999999999999999999995 79999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC-C--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHH
Q 003517          194 GRIAMSAAAVNDVAAWVLLALAIALSSS-S--SSLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCIT  270 (813)
Q Consensus       194 g~l~ls~a~i~D~~~~~ll~l~~~~~~~-~--~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~  270 (813)
                      ++++.+++.+||.++++++.+...+... .  .....++.++..+++.++.++++++++.|+.+|...  ..++.+..++
T Consensus       151 ~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~--~~~~~~~i~~  228 (562)
T PRK05326        151 ASTLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIAL--PAEGLYPILV  228 (562)
T ss_pred             HhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--chhhHHHHHH
Confidence            9999999999999999988777665433 2  112223445555666777778889999999988732  1245677888


Q ss_pred             HHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHH
Q 003517          271 LSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLV  350 (813)
Q Consensus       271 l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~i  350 (813)
                      ++++++++++++.+|.|+++|+|++|+++++.++..+...+++.+...+++.|+||+++|+.+|+..+.+ ..+...++.
T Consensus       229 l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~-~~~~~l~i~  307 (562)
T PRK05326        229 LAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLD-IALPALLLA  307 (562)
T ss_pred             HHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHH
Confidence            9999999999999999999999999999998655555556666666688999999999999999988764 223323333


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCh-HHHHHHHHHHHHHHHhHHHHHHHh
Q 003517          351 ILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLND-QAFAILVLMALFTTFITTPILMAI  429 (813)
Q Consensus       351 i~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~-~~~~~lvl~~vv~t~i~~plv~~l  429 (813)
                      +++.+++|++++++.++.+++++||+..+||. ++||.++++++..+...++.+. ..|.++.+++++++++.++.++.+
T Consensus       308 ~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~  386 (562)
T PRK05326        308 LFLILVARPLAVFLSLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWA  386 (562)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHH
Confidence            45667899999999999999999999999995 8999999999999998888864 567887788888888888888776


Q ss_pred             hcccc
Q 003517          430 YKPAR  434 (813)
Q Consensus       430 ~~~~~  434 (813)
                      .++.+
T Consensus       387 a~~l~  391 (562)
T PRK05326        387 ARKLG  391 (562)
T ss_pred             HHHcC
Confidence            65533

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=100.00  E-value=8.9e-35  Score=310.60  Aligned_cols=269  Identities=26%  Similarity=0.489  Sum_probs=228.3

Q ss_pred             HHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcc
Q 003517           46 AFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTG  125 (813)
Q Consensus        46 ~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~  125 (813)
                      +++.+.+.++||+|+|++++++++|+++||+.+|.+++          .+.++.++++|++++||.+|+|+|++.+||++
T Consensus         2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~----------~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~   71 (273)
T TIGR00932         2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISN----------VEGVNHLAEFGVILLMFLIGLELDLERLWKLR   71 (273)
T ss_pred             cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCC----------hHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            46778899999999999999999999999999986542          35789999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHH-HHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHHHHHHHHHHH
Q 003517          126 KKSLGIALAGITLP-FALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAAAVN  204 (813)
Q Consensus       126 ~~~~~ia~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~  204 (813)
                      |++..++..++++| +++++.+.++++      ++. ..++++|++++.||++++.++++|+|+.+++.|+++++++++|
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~  144 (273)
T TIGR00932        72 KAAFGVGVLQVLVPGVLLGLLLGHLLG------LAL-GAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQ  144 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHC------CCH-HHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHH
Confidence            99999999999999 666665555543      222 4689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 003517          205 DVAAWVLLALAIALSSSS--SSLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCITLSMVLAASFVTD  282 (813)
Q Consensus       205 D~~~~~ll~l~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae  282 (813)
                      |+++++++.+......+.  +.....+.+...+++.++.+++.++...|+.|+.+++++ .|.+...++.+++.+++++|
T Consensus       145 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~la~  223 (273)
T TIGR00932       145 DIAVVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRP-SELFTAGSLLLMFGSAYFAD  223 (273)
T ss_pred             HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHH
Confidence            999999998877665431  222233344444555556667788888899888765433 47778888999999999999


Q ss_pred             HHChhHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccc
Q 003517          283 TIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTN  334 (813)
Q Consensus       283 ~~g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~d  334 (813)
                      .+|.|+++|||++|+++++ .+.++++.++++++. ++|+|+||+++|+++|
T Consensus       224 ~~g~s~~lgaf~aGl~~~~-~~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~  273 (273)
T TIGR00932       224 LLGLSMALGAFLAGVVLSE-SEYRHKLESDLEPIG-GVLLPLFFISVGMSVD  273 (273)
T ss_pred             HhCCcHHHHHHHHHHHHcC-CchHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence            9999999999999999998 566888999999997 9999999999999987

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]

Probab=100.00  E-value=2.2e-39  Score=363.15  Aligned_cols=371  Identities=31%  Similarity=0.534  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHH
Q 003517           43 LVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSIL  122 (813)
Q Consensus        43 lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~  122 (813)
                      ++++.+.+.+.++||+++|.+++|+++|+++||.+++..++       +  ...++.++++|+.++||.+|+|+|.+.+|
T Consensus         3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~-------~--~~~~~~l~~i~l~~llF~~G~~~d~~~l~   73 (380)
T PF00999_consen    3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEP-------D--NPSFELLAEIGLAFLLFEAGLELDIKELR   73 (380)
T ss_dssp             ------------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG---
T ss_pred             EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccc-------h--hhHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            34455666777899999999999999999999998884332       1  36678899999999999999999999999


Q ss_pred             hcchhhHHHHHHHHHHHHHH-HHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHHHHHHHH
Q 003517          123 RTGKKSLGIALAGITLPFAL-GIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAA  201 (813)
Q Consensus       123 ~~~~~~~~ia~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a  201 (813)
                      |++|+++.+++.++++|+++ ++.+.+++. .  .+++. ..++++|.+++.||++++.++++|.+..+++.++++++++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~-~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~  149 (380)
T PF00999_consen   74 RNWRRALALGLVGFLLPFILVGFLLSFFLF-I--LGLSW-AEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSES  149 (380)
T ss_dssp             --------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTT
T ss_pred             cccccccccccceeeehhhHHHHHHHHhhc-c--chhhh-HHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhc
Confidence            99999999999999999988 666554321 1  13333 4679999999999999999999888889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHH
Q 003517          202 AVNDVAAWVLLALAIALSSSS---SSLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCITLSMVLAAS  278 (813)
Q Consensus       202 ~i~D~~~~~ll~l~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~  278 (813)
                      ++||+++++++.+.......+   +.......++..+...++.+++.+++.+|+.|+.   ++.++.+..+++++++.++
T Consensus       150 ~i~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~  226 (380)
T PF00999_consen  150 VINDIIAIILLSILISLAQASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA---SPSSEIFILLVLALILLLY  226 (380)
T ss_dssp             TTTTTTTTTTT---------------------------------------------------------------------
T ss_pred             hhhccchhhhhhhhhhhhcccccccccchhcchhhhhhhheeeecccchHHHHhhhhc---cccchhhHHHHHHHHhhhc
Confidence            999999999988777655211   1111111222223333333344444444444442   2356777888999999999


Q ss_pred             HHHHHHChhHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhh-chhhHHHHHHHHHHHHHH
Q 003517          279 FVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIR-GATSWGLLLLVILNACFG  357 (813)
Q Consensus       279 ~~ae~~g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~-~~~~~~~~~~ii~~~~~~  357 (813)
                      +++|.+|.|+++|+|++|+++++ .+.++++.++++++.++++.|+||+++|+++|++.+. +...|.....+++..+++
T Consensus       227 ~~a~~~g~s~~l~af~~Gl~~~~-~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~  305 (380)
T PF00999_consen  227 GLAEILGLSGILGAFIAGLILSN-SPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLG  305 (380)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccceeeeeehcccc-ccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHh
Confidence            99999999999999999999995 7788889999999977999999999999999998874 223565566666677799


Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHhHHHHHHHhh
Q 003517          358 KIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIY  430 (813)
Q Consensus       358 K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~l~  430 (813)
                      |++++++.+++.|.++||++.+|+.+++||+++++++..+.+.+.++++.+++++.++++++.+.++.++.+.
T Consensus       306 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~  378 (380)
T PF00999_consen  306 KFIGVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLL  378 (380)
T ss_dssp             -----------------HHHHTTTTSS--HHHHHHHHHHHHH-------------------------------
T ss_pred             hhceeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999998888888888877776554

These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.4e-34  Score=285.46  Aligned_cols=380  Identities=26%  Similarity=0.387  Sum_probs=308.5

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHH
Q 003517           32 YALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFL  111 (813)
Q Consensus        32 ~~l~~~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~  111 (813)
                      ++.|+ +..+..-+.++.+++.+..|+|+|+.+||+++|++.||.--|...          .......++++|++++||-
T Consensus         3 h~tpl-i~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFva----------d~~La~~LAelGViLLmFg   71 (408)
T COG4651           3 HDTPL-ITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVA----------DQTLAPELAELGVILLMFG   71 (408)
T ss_pred             CCchH-HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCccc----------chhHHHHHHHhhHHHHHHh
Confidence            34443 444666678889999999999999999999999999998777542          2344558999999999999


Q ss_pred             HhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCC
Q 003517          112 VGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTT  191 (813)
Q Consensus       112 ~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s  191 (813)
                      +|++++++++......++--++.++.+....+.++++.++      |+.. ..+.+|.++|..|..+..|.|+|++++++
T Consensus        72 vGLhfslkdLLavk~iAipgAl~qia~at~lg~gL~~~lg------ws~~-~glvfGlaLS~aSTVvllraLqEr~lidt  144 (408)
T COG4651          72 VGLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSSLLG------WSFG-TGIVFGLALSVASTVVLLRALEERQLIDT  144 (408)
T ss_pred             cchheeHHHHhhHHHHhcchHHHHHHHHHHHHhHHHHHcC------CCcc-cceeeeehhhhHHHHHHHHHHHHhccccc
Confidence            9999999999877665555566666666666666666654      4432 35788999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---Cc-----hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Q 003517          192 DLGRIAMSAAAVNDVAAWVLLALAIALSSS---SS-----SLI-AVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPV  262 (813)
Q Consensus       192 ~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~---~~-----~~~-~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~  262 (813)
                      +-||++++.-+++|+..++.+.+..++.+-   .+     ... ..+...+...|..++.++.|.+..|+..+.... ..
T Consensus       145 ~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~t-Gs  223 (408)
T COG4651         145 QRGRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAAT-GS  223 (408)
T ss_pred             cCceEEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-Cc
Confidence            999999999999999999888877765432   11     111 233455778899999999999999998887432 24


Q ss_pred             hhHHHHHHHHHHHHHHH-HHHHHChhHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhch
Q 003517          263 KELYVCITLSMVLAASF-VTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGA  341 (813)
Q Consensus       263 ~e~~~~~~l~~~l~~~~-~ae~~g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~  341 (813)
                      +|.+.+.+++++++.++ .++.+|+|+.+|||++|+++++ ++..++..+..-++ .+.|.-+||+++||..|+..+.+.
T Consensus       224 rElf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~e-selshraa~~slpL-rdaFaVlFFvsVGmlf~P~~l~~~  301 (408)
T COG4651         224 RELFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAE-SELSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPMILIQQ  301 (408)
T ss_pred             HHHHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcc-hhhhHHHHHhccCH-HHHHHHHHHHHhhhhcCcHHhhcc
Confidence            78899999999999888 5678999999999999999995 88999999988888 789999999999999999877652


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHh
Q 003517          342 TSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFI  421 (813)
Q Consensus       342 ~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i  421 (813)
                       .+. +...+.+.+.+|-+..+...+.+|.|.|.++.++..+.+.|+++++++..+.+.++++ +...-++++.-+.+++
T Consensus       302 -pl~-vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp-~~gr~LvlagailsIl  378 (408)
T COG4651         302 -PLA-VLATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLP-EAGRDLVLAGAILSIL  378 (408)
T ss_pred             -hHH-HHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCc-HHHHHHHHHHHHHHHH
Confidence             333 3445556678999999999999999999999999999999999999999999999998 4455555777777888


Q ss_pred             HHHHHHHhhccccc
Q 003517          422 TTPILMAIYKPARK  435 (813)
Q Consensus       422 ~~plv~~l~~~~~~  435 (813)
                      ..|+.....++.++
T Consensus       379 ~nPllf~~~dr~~~  392 (408)
T COG4651         379 LNPLLFALLDRYQR  392 (408)
T ss_pred             HhHHHHHHHHHHhh
Confidence            88988766665443

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=99.96  E-value=6.4e-27  Score=270.28  Aligned_cols=366  Identities=16%  Similarity=0.206  Sum_probs=259.4

Q ss_pred             ccCCCCCCccHHHHHHHHHHHHHHHHHHHHH-hcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHH
Q 003517           24 FQGENPLDYALPLIILQICLVVAFTRFLAFL-LKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLAN  102 (813)
Q Consensus        24 ~~g~~~~~~~l~~~l~~i~lil~~~~~~~~l-~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~  102 (813)
                      |+.-++-+..+.  +.-++..+++..++..+ .+|+.+|..+.++++|+++||.++|+.++..   +.......++ +++
T Consensus         3 w~~l~~~~~~l~--~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~---~g~~d~i~le-Ite   76 (810)
T TIGR00844         3 WEQLEVTKAHVA--YSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLS---WGNTDSITLE-ISR   76 (810)
T ss_pred             cccccccchhhH--HHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhh---cccchHHHHH-HHH
Confidence            443344443333  33344444444444444 4599999999999999999999988654310   0001233445 999


Q ss_pred             HHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHH
Q 003517          103 IGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARI  182 (813)
Q Consensus       103 lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~i  182 (813)
                      +++++.+|.+|++++.+.+++.|+.++.+++.++.++++++.++++++..    +.++ ..++++|+++++|+|+....+
T Consensus        77 IvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~----GL~~-~~ALLLGAILAPTDPVLAssV  151 (810)
T TIGR00844        77 ILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVP----GLNF-PASLLMGACITATDPVLAQSV  151 (810)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCH-HHHHHHHhhhcCCcHHHHHHH
Confidence            99999999999999999999999999999999999999888877776632    2333 578999999999999877777


Q ss_pred             HH---HcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc--C-Cchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003517          183 LA---ELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSS--S-SSSL---IAVWVLLSGAAFVVFAVFVIRPVLSLMA  253 (813)
Q Consensus       183 L~---el~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~--~-~~~~---~~~~~~~~~i~~~~~~~~v~~~~~~~i~  253 (813)
                      ++   ..+ ++.++..++.+++.+||.++++++.+...+..  + +...   ..++.++..+++.++++++++++..|+.
T Consensus       152 ~kg~~~~r-vP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll  230 (810)
T TIGR00844       152 VSGTFAQK-VPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAI  230 (810)
T ss_pred             Hhcccccc-CChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76   334 68899999999999999999988766654432  1 1111   1122333334444444455555555544


Q ss_pred             hhCCCC-CCchhHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCchHH-HHHHHHHHHHHhhHHHHHHHhcc
Q 003517          254 RRSPEG-EPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGV-LIEKIEDMVSGLFLPLYFAASGL  331 (813)
Q Consensus       254 ~~~~~~-~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~~~-l~~kl~~~~~~~~~plFF~~~G~  331 (813)
                      ++..+. ....+.++.+.++++++++.+++.+|.++++++|++|+++.+...+.+. -...+......++..++|+++|+
T Consensus       231 ~~l~rr~~i~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa  310 (810)
T TIGR00844       231 RFAEGKNIIDRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGS  310 (810)
T ss_pred             HHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            433211 1124556777888888899999999999999999999999975433322 22336666677889999999999


Q ss_pred             ccchhhhhc----hhhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHhhhhHHHHHHHHhhcccCC
Q 003517          332 KTNVATIRG----ATSWGLLLLVILNACFGKIVGTVVVAWSC--KVPLRESLALGFIMNTKGLVELIVLNIGKDRKV  402 (813)
Q Consensus       332 ~~dl~~l~~----~~~~~~~~~ii~~~~~~K~~~~~l~~~~~--~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~  402 (813)
                      .+....+..    ...|..+++.+++.++.|+.++++...+.  ..++||++++|| .++||+.++.++.++.+.+.
T Consensus       311 ~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~  386 (810)
T TIGR00844       311 ILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE  386 (810)
T ss_pred             hhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence            998876643    12455556666677788988887764443  468999999999 79999999999988876544

This model is specific for the fungal members of this family.

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form

Probab=99.96  E-value=7.5e-27  Score=269.53  Aligned_cols=366  Identities=15%  Similarity=0.137  Sum_probs=253.0

Q ss_pred             HHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHH
Q 003517           42 CLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSI  121 (813)
Q Consensus        42 ~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l  121 (813)
                      ..+++++.....+++|+++|.+++++++|+++||..++...       +.+    -+.+..+++.+++|..|+++|++.+
T Consensus         4 ~~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~-------~~~----~~~~~~~~Lp~lLF~~g~~~~~~~l   72 (525)
T TIGR00831         4 IELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEV-------PLD----REIVLFLFLPPLLFEAAMNTDLREL   72 (525)
T ss_pred             HHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCC-------CCC----HHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            34455566677889999999999999999999986543211       111    1234568999999999999999999


Q ss_pred             HhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHHHHHHHH
Q 003517          122 LRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAA  201 (813)
Q Consensus       122 ~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a  201 (813)
                      |++++.+..+++.++++|++++....+++.     +.++ ..++++|+++|+|+++++.+++++.+ .++++.+++.+++
T Consensus        73 ~~~~~~i~~la~~~vlit~~~v~~~~~~~~-----~l~~-~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gES  145 (525)
T TIGR00831        73 RENFRPIALIAFLLVVVTTVVVGFSLNWIL-----GIPL-ALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGES  145 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cccH-HHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhh
Confidence            999999999999999999888766555431     2333 57899999999999999999999988 6899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcC-C--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHH
Q 003517          202 AVNDVAAWVLLALAIALSSS-S--SSLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCITLSMVLAAS  278 (813)
Q Consensus       202 ~i~D~~~~~ll~l~~~~~~~-~--~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~  278 (813)
                      ++||..+++++.+...+..+ +  +.....+.++..++..++++++++.+..|+.|+..+ .  +.....++++++++++
T Consensus       146 llND~~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~-~--~~~~~~l~l~~~~~~y  222 (525)
T TIGR00831       146 LLNDGAALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKID-D--PLVEIALTILAPFAGF  222 (525)
T ss_pred             hhcchHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c--cHHHHHHHHHHHHHHH
Confidence            99999999999887766542 2  222233334444444555666667777777655432 1  3345677889999999


Q ss_pred             HHHHHHChhHHHHHHHHhhhcCCCCCc------hHHHHHHHHHHHHHhhHHHHHHHhccccchhhh--hchh--h-----
Q 003517          279 FVTDTIGIHALFGAFVVGIIMPKEGPF------AGVLIEKIEDMVSGLFLPLYFAASGLKTNVATI--RGAT--S-----  343 (813)
Q Consensus       279 ~~ae~~g~~~~lgaf~aGL~l~~~~~~------~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l--~~~~--~-----  343 (813)
                      +++|.+|.|+++++|++|+++++..+.      .+...+.++.....++.+++|+++|++++....  ....  .     
T Consensus       223 ~lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~  302 (525)
T TIGR00831       223 LLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVI  302 (525)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence            999999999999999999999875433      122334566666789999999999999874211  1100  0     


Q ss_pred             HHH---HHHHHHHHHHHHHHHHHHHH--Hh-----cCCChHHHHHHHHHHhhhhHHHHHHHHhhcc---cC--CCChHH-
Q 003517          344 WGL---LLLVILNACFGKIVGTVVVA--WS-----CKVPLRESLALGFIMNTKGLVELIVLNIGKD---RK--VLNDQA-  407 (813)
Q Consensus       344 ~~~---~~~ii~~~~~~K~~~~~l~~--~~-----~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~---~~--~i~~~~-  407 (813)
                      +..   .+++.......|++.++...  ++     .+++||+.+.++| .+.||.++++++.....   .+  ....+. 
T Consensus       303 ~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~i  381 (525)
T TIGR00831       303 LALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYEL  381 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHHH
Confidence            100   11111222345554333221  11     3578999999999 59999999987753321   11  222232 


Q ss_pred             ----HHHHHHHHHHHHHhHHHHHHHh
Q 003517          408 ----FAILVLMALFTTFITTPILMAI  429 (813)
Q Consensus       408 ----~~~lvl~~vv~t~i~~plv~~l  429 (813)
                          +.+++++.++.....+|+++++
T Consensus       382 ~~~~~~vVl~TllvqG~tlp~l~r~l  407 (525)
T TIGR00831       382 VFLAAGVILFSLLVQGISLPIFVKRK  407 (525)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence                3334444555555555665544

This model is specific for the bacterial members of this family.

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]

Probab=99.94  E-value=4.2e-24  Score=240.02  Aligned_cols=379  Identities=18%  Similarity=0.219  Sum_probs=281.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhc
Q 003517           36 LIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLE  115 (813)
Q Consensus        36 ~~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle  115 (813)
                      ..++++.+++.++.+...+.+|+..|.+..+++.|++.||.+++...+-        ....-+.+..+++..++|..|+|
T Consensus         6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~--------~~~~~el~~~l~l~ilLf~~g~~   77 (429)
T COG0025           6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPD--------LELDPELFLVLFLAILLFAGGLE   77 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhcccccc--------ccCChHHHHHHHHHHHHHHhHhc
Confidence            4567888888999999999999999999999999999999988865431        11122334499999999999999


Q ss_pred             cChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHH
Q 003517          116 LDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGR  195 (813)
Q Consensus       116 ~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~  195 (813)
                      +|.+.+||+++....+++.+++++.+......+++..    ++++ ..++.+|+++|+|++.++.++.++.| .+.++.+
T Consensus        78 l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~----~i~~-~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~  151 (429)
T COG0025          78 LDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLP----GIPL-AAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRT  151 (429)
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ChhH-HHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHH
Confidence            9999999999999999999999988776666666622    3443 57899999999999999999999977 7999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC-Cc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CCchhHHHHHHH
Q 003517          196 IAMSAAAVNDVAAWVLLALAIALSSS-SS--SLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEG-EPVKELYVCITL  271 (813)
Q Consensus       196 l~ls~a~i~D~~~~~ll~l~~~~~~~-~~--~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~-~~~~e~~~~~~l  271 (813)
                      +..+++++||..+++++.+...+... +.  .......++..++..+.++++++.+..|+.++.... .........+++
T Consensus       152 iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L  231 (429)
T COG0025         152 ILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTL  231 (429)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHH
Confidence            99999999999999999888776553 22  123333333333444444444444444444443210 111344568899


Q ss_pred             HHHHHHHHHHHHHChhHHHHHHHHhhhcC-----CCCCch-HHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHH
Q 003517          272 SMVLAASFVTDTIGIHALFGAFVVGIIMP-----KEGPFA-GVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWG  345 (813)
Q Consensus       272 ~~~l~~~~~ae~~g~~~~lgaf~aGL~l~-----~~~~~~-~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~  345 (813)
                      ...+..+.++|.+|.|++++++++|++..     +..+.. +...+.++.....++.-+.|++.|++++....... .++
T Consensus       232 ~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~-~~~  310 (429)
T COG0025         232 LLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLAL-GLL  310 (429)
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh-hHH
Confidence            99999999999999999999999998773     112222 44445566776789999999999999999877652 356


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHhhhhHHHHHHHHhhccc-CCCChHH-----HHHHHH
Q 003517          346 LLLLVILNACFGKIVGTVVVAWSCK------VPLRESLALGFIMNTKGLVELIVLNIGKDR-KVLNDQA-----FAILVL  413 (813)
Q Consensus       346 ~~~~ii~~~~~~K~~~~~l~~~~~~------~~~re~~~lgl~l~~kG~v~l~~~~~~~~~-~~i~~~~-----~~~lvl  413 (813)
                      ..++.++..+++|+++++...+..+      .+++|+++++|. ++||.++++++...... .....+.     +.+++.
T Consensus       311 ~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w~-G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~  389 (429)
T COG0025         311 GLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSWA-GPRGVVSLALALLIPLELPGPARELILFIVFLVILF  389 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhhc-ccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHH
Confidence            6667777889999999999988853      799999999994 99999999888665422 1111233     334444


Q ss_pred             HHHHHHHhHHHHHHHhh
Q 003517          414 MALFTTFITTPILMAIY  430 (813)
Q Consensus       414 ~~vv~t~i~~plv~~l~  430 (813)
                      ++++.++..+|+.++..
T Consensus       390 Sl~v~g~t~~~l~~~~~  406 (429)
T COG0025         390 SLLVQGLTLPPLAKKLE  406 (429)
T ss_pred             HHHHHhhhHHHHHHHhc
Confidence            44444555555555443

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3

Probab=99.93  E-value=9.2e-23  Score=235.35  Aligned_cols=371  Identities=12%  Similarity=0.144  Sum_probs=254.7

Q ss_pred             HHHHHHHHH-hccc-CCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHh
Q 003517           46 AFTRFLAFL-LKPL-RQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILR  123 (813)
Q Consensus        46 ~~~~~~~~l-~~~l-~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~  123 (813)
                      .++.+...+ -++. ++|..+..++.|+++|+...+...      .+... -.-+.+-.+.+..++|..|+++|.+.+++
T Consensus        19 ~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~------~~~~~-l~~~lf~~~~LPpIlFe~g~~l~~~~f~~   91 (559)
T TIGR00840        19 SLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPH------IDPPT-LDSSYFFLYLLPPIVLDAGYFMPQRNFFE   91 (559)
T ss_pred             HHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCC------CccCC-cCHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            333344333 3444 499999999999999986433210      00000 11245666788889999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHHHHHHH
Q 003517          124 TGKKSLGIALAGITLPFALGIGTSFVLRSTVL---KGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSA  200 (813)
Q Consensus       124 ~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~  200 (813)
                      +.+.++.+|+.+++++.++.....+++.....   .++++ ..++.+|+++|+|+|+.+..++++.+ .+.++-.++.++
T Consensus        92 n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~-~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gE  169 (559)
T TIGR00840        92 NLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGL-LDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGE  169 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCH-HHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehh
Confidence            99999999999999988766555554432111   12333 57899999999999999999999999 799999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcC--Cc-h-h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHH
Q 003517          201 AAVNDVAAWVLLALAIALSSS--SS-S-L---IAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCITLSM  273 (813)
Q Consensus       201 a~i~D~~~~~ll~l~~~~~~~--~~-~-~---~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~  273 (813)
                      +++||.++++++.++..+...  +. . .   .....++...+..++++++++.+..++.|+....+   .....+++++
T Consensus       170 SllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~~---~~e~~l~l~~  246 (559)
T TIGR00840       170 SLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHIR---QIEPLFVFLI  246 (559)
T ss_pred             hhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---hhHHHHHHHH
Confidence            999999999999877765431  11 1 1   11112222222355666667777777777764322   3345678888


Q ss_pred             HHHHHHHHHHHChhHHHHHHHHhhhcCCC-----CCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHH
Q 003517          274 VLAASFVTDTIGIHALFGAFVVGIIMPKE-----GPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLL  348 (813)
Q Consensus       274 ~l~~~~~ae~~g~~~~lgaf~aGL~l~~~-----~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~  348 (813)
                      +++++.++|.+|.|++++++++|+++.+.     .+..+.-.+.+......++..+.|+++|+.+....  ....|...+
T Consensus       247 ~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~--~~~~~~~i~  324 (559)
T TIGR00840       247 SYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTEN--HEWNWAFVV  324 (559)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--hhHHHHHHH
Confidence            99999999999999999999999999642     22223333445555577888999999999763221  112344444


Q ss_pred             HHHHHHHHHHHHHHHHHHHh------cCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHH-----HHHHHH
Q 003517          349 LVILNACFGKIVGTVVVAWS------CKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAIL-----VLMALF  417 (813)
Q Consensus       349 ~ii~~~~~~K~~~~~l~~~~------~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~l-----vl~~vv  417 (813)
                      +.+++.++.|+++++..++.      .++++||.+.++| .+.||.++++++....+.+.-..+.+..+     ++++++
T Consensus       325 ~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~Tvlv  403 (559)
T TIGR00840       325 ATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFTVIF  403 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehHHHHH
Confidence            45556678899888776543      4589999999999 59999999988765544333333333333     334444


Q ss_pred             HHHhHHHHHHHhhc
Q 003517          418 TTFITTPILMAIYK  431 (813)
Q Consensus       418 ~t~i~~plv~~l~~  431 (813)
                      ....++|+++++.-
T Consensus       404 qG~T~~pl~~~L~l  417 (559)
T TIGR00840       404 QGGTIKPLVEVLKV  417 (559)
T ss_pred             HHhhHHHHHHHhCC
Confidence            44555777776643

This model is specific for the eukaryotic members members of this family.

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]

Probab=99.91  E-value=3.7e-22  Score=210.74  Aligned_cols=355  Identities=17%  Similarity=0.169  Sum_probs=287.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhc
Q 003517           36 LIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLE  115 (813)
Q Consensus        36 ~~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle  115 (813)
                      .+++.-.++++++.+.+.++.|+|.|..+-.+..|++.|--++|.++.        ++.+.-..++++++++++|..|+.
T Consensus         7 ~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~f--------dNy~~Ay~vg~lALaiILfdgG~~   78 (574)
T COG3263           7 LILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEF--------DNYPFAYMVGNLALAIILFDGGFG   78 (574)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCccccccc--------CccHHHHHHHHHHHHHHhhcCccC
Confidence            444445577778888999999999999999999999999999987642        345777889999999999999999


Q ss_pred             cChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHH
Q 003517          116 LDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGR  195 (813)
Q Consensus       116 ~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~  195 (813)
                      ++++.+|...++++.++..+++++-.+....++++..   .+|   ..++++|++..+|+.+.+..+|.+.+ +|.+++.
T Consensus        79 T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~---l~w---le~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~s  151 (574)
T COG3263          79 TQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLN---LDW---LEGLLIGAIVGSTDAAAVFSLLGGKN-LNERVAS  151 (574)
T ss_pred             CcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cHH---HHHHHHHHhhccccHHHHHHHHccCC-hhhhhhh
Confidence            9999999999999999999999987766655555532   122   46799999999999999999999988 6999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC-Cch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHH
Q 003517          196 IAMSAAAVNDVAAWVLLALAIALSSS-SSS--LIAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCITLS  272 (813)
Q Consensus       196 l~ls~a~i~D~~~~~ll~l~~~~~~~-~~~--~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~  272 (813)
                      +..-++--||-.++.+..-.+.+... .+.  ...+..++..+++.++.++..+++..|+++|..-   .+..|..++++
T Consensus       152 tLEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nL---d~GL~pil~la  228 (574)
T COG3263         152 TLEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINL---DSGLYPILALA  228 (574)
T ss_pred             hEEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcc---ccchhHHHHHH
Confidence            99999999999998776544444333 221  2223335677788888899999999999999832   25677889999


Q ss_pred             HHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCc-hHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHH
Q 003517          273 MVLAASFVTDTIGIHALFGAFVVGIIMPKEGPF-AGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVI  351 (813)
Q Consensus       273 ~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~-~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii  351 (813)
                      ..++.+.+++.+|-|++++.+++|+.+.|.+-. ++.+.+-.+.+ .++..-+.|...|+...++.+.. ...+.+.+.+
T Consensus       229 ~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~~-iavPailL~l  306 (574)
T COG3263         229 GGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGL-AWLAQILMFLVLGLLVTPSQLLP-IAIPAILLSL  306 (574)
T ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhhhH-hhHHHHHHHH
Confidence            999999999999999999999999999984433 34555555666 67778888999999999988876 4555566667


Q ss_pred             HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHH-HHHH
Q 003517          352 LNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQA-FAIL  411 (813)
Q Consensus       352 ~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~-~~~l  411 (813)
                      ...+++|.+++|+...-+++++||.++++| -+-||.+.++++....-.|.-+.+. |++.
T Consensus       307 ~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvA  366 (574)
T COG3263         307 WMIFVARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVA  366 (574)
T ss_pred             HHHHHHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehh
Confidence            777899999999999999999999999999 5999999999988776666655543 4443

>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]

Probab=99.75  E-value=1.3e-16  Score=177.14  Aligned_cols=385  Identities=17%  Similarity=0.181  Sum_probs=253.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccC---CChhHHHHHHHHhhcccccCCchhhhc-----cccCCCchHHHHHHHHHHHHHH
Q 003517           37 IILQICLVVAFTRFLAFLLKPLR---QPRVIAEIIGGVLLGPSALGRSERFLN-----TVFPKKSMTVLETLANIGLLFF  108 (813)
Q Consensus        37 ~l~~i~lil~~~~~~~~l~~~l~---~P~ii~~ilaGiilGP~~lg~~~~~~~-----~lfp~~~~~~l~~l~~lgl~~l  108 (813)
                      -++-.+++++++.+.++++++-|   +|.-+.-++.|+++|-..........+     ..|.+      +.+-.+-+--+
T Consensus        36 al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~------~~ff~vLLPpi  109 (575)
T KOG1965|consen   36 ALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSP------DLFFLVLLPPI  109 (575)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecc------cHHHHHhhchh
Confidence            34445667777888999999888   999999999999999543221110000     01111      12334445558


Q ss_pred             HHHHhhccChhHHHhcchhhHHHHHHHHHHHH-HHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcC
Q 003517          109 LFLVGLELDIKSILRTGKKSLGIALAGITLPF-ALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELK  187 (813)
Q Consensus       109 lF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~  187 (813)
                      .|..|.+++.+.++|+......+++.|..+.. ++|.++.++.......++.+ ..++++|+++|.|+|..+..+++|++
T Consensus       110 if~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f-~d~L~fGaliSATDPVtvLaIfnel~  188 (575)
T KOG1965|consen  110 IFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSF-KDCLAFGALISATDPVTVLAIFNELG  188 (575)
T ss_pred             hhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccH-HHHHHHhhHhcccCchHHHHHHHHhC
Confidence            89999999999999999999999998877754 45555444433222335555 67899999999999999999999999


Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chh---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCC
Q 003517          188 LLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSS-SSL---IAVWVLLS----GAAFVVFAVFVIRPVLSLMARRSPEG  259 (813)
Q Consensus       188 l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~~-~~~---~~~~~~~~----~i~~~~~~~~v~~~~~~~i~~~~~~~  259 (813)
                       ....+-.++-+++++||.++++++..+....... +..   ..+..++.    .++.++..+++...+.+.+.-|.   
T Consensus       189 -vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~~---  264 (575)
T KOG1965|consen  189 -VDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLRR---  264 (575)
T ss_pred             -CCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence             7789999999999999999999998777655431 111   12222222    22233333333333333332221   


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCC-----CCchHHHHHHHHHHHHHhhHHHHHHHhccc-c
Q 003517          260 EPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKE-----GPFAGVLIEKIEDMVSGLFLPLYFAASGLK-T  333 (813)
Q Consensus       260 ~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~-----~~~~~~l~~kl~~~~~~~~~plFF~~~G~~-~  333 (813)
                      .+  .....+.+++....+++||.+|+++++..++.|+++++.     .+..+.-.+....+...+...+-|+++|+. +
T Consensus       265 ~~--~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f  342 (575)
T KOG1965|consen  265 TP--SLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAF  342 (575)
T ss_pred             Cc--HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence            22  334677899999999999999999999999999999853     333445555566666777778889999963 2


Q ss_pred             chhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC----------CChHHHHHHHHHHhhhhHHHHHHHHhhc-cc--
Q 003517          334 NVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCK----------VPLRESLALGFIMNTKGLVELIVLNIGK-DR--  400 (813)
Q Consensus       334 dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~----------~~~re~~~lgl~l~~kG~v~l~~~~~~~-~~--  400 (813)
                      +.....- ..........++.+++|..-.+-.+.+.+          .|.++-..+.|.=.-||.++++++.--. +.  
T Consensus       343 ~~~k~~~-~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~  421 (575)
T KOG1965|consen  343 DFQKHVY-KSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPH  421 (575)
T ss_pred             cccceee-echHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhcccccc
Confidence            3333221 11223444455567778776655554432          4555566666654479999988774321 11  


Q ss_pred             ---CCCChHHHHHHHHHHHHHHHhHHHHHHHhhccccc
Q 003517          401 ---KVLNDQAFAILVLMALFTTFITTPILMAIYKPARK  435 (813)
Q Consensus       401 ---~~i~~~~~~~lvl~~vv~t~i~~plv~~l~~~~~~  435 (813)
                         ..+-..+..+.++++++....+.|+++++.....+
T Consensus       422 ~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~~~  459 (575)
T KOG1965|consen  422 TGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMISVGV  459 (575)
T ss_pred             ccccEEEEeeeeeeeeeeeeeCCccHHHHHHhcccccc
Confidence               22223334445566677778889999988754433

>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=99.74  E-value=3.9e-15  Score=163.20  Aligned_cols=270  Identities=20%  Similarity=0.296  Sum_probs=178.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhHH-------HhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHH
Q 003517           96 VLETLANIGLLFFLFLVGLELDIKSI-------LRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMG  168 (813)
Q Consensus        96 ~l~~l~~lgl~~llF~~Gle~d~~~l-------~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg  168 (813)
                      ..+.+.+--..+|.|.+|+|+.-+.+       ||..- ...-++.|+++|.++-..    +...    .+  ...--+|
T Consensus        62 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~l-P~~aAlGGm~vPaliy~~----~n~~----~~--~~~~GW~  130 (423)
T PRK14853         62 LGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAAL-PVAAALGGMIVPALIYVA----VNLA----GG--GALRGWA  130 (423)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHH-HHHHHHHhHHHHHHHHHH----HhCC----ch--hhhhhhh
Confidence            44556666677899999999954433       33322 235677888888754332    2111    00  1112222


Q ss_pred             HHHhhccHHHHHHHHHHcCc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 003517          169 VSLSITAFPVLARILAELKL-LTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRP  247 (813)
Q Consensus       169 ~~ls~Ts~~vv~~iL~el~l-~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~  247 (813)
                       +-+.|+.+....+|..+|- .+++++...++.+++||+.+++++++..   ++  .....+.......+  ++.     
T Consensus       131 -Ip~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t~--~i~~~~L~~a~~~~--~~l-----  197 (423)
T PRK14853        131 -IPTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---TS--ELNLEALLLALVPL--ALF-----  197 (423)
T ss_pred             -hhhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---CC--CCCHHHHHHHHHHH--HHH-----
Confidence             3456788888999999874 4889999999999999999999888765   22  22222222221111  111     


Q ss_pred             HHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCC-----------CchHHHHHHHHHH
Q 003517          248 VLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEG-----------PFAGVLIEKIEDM  316 (813)
Q Consensus       248 ~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~-----------~~~~~l~~kl~~~  316 (813)
                         |+.+|.+    +++.+.++++.  +.+.+..+..|+|+.+|+|++|+++|..+           +..++++++++++
T Consensus       198 ---~~l~~~~----V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~  268 (423)
T PRK14853        198 ---WLLVQKR----VRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPL  268 (423)
T ss_pred             ---HHHHHcC----CchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHH
Confidence               2222321    33444444443  35666889999999999999999999411           3357899999999


Q ss_pred             HHHhhHHHH-HHHhccccch-hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHh
Q 003517          317 VSGLFLPLY-FAASGLKTNV-ATIRGATSWGLLLLVILNACFGKIVGTVVVAWSC----------KVPLRESLALGFIMN  384 (813)
Q Consensus       317 ~~~~~~plF-F~~~G~~~dl-~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~re~~~lgl~l~  384 (813)
                      +..+++|+| |+..|.++|. ..+.+...-.....+++..++||.+|.+..++..          +++|++-..+|+ ++
T Consensus       269 V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~-L~  347 (423)
T PRK14853        269 SAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVAL-LA  347 (423)
T ss_pred             HHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHH-HH
Confidence            999999999 9999999986 4342211112445566777899999987776652          567888888888 56


Q ss_pred             hhh-HHHHHHHHhhcc
Q 003517          385 TKG-LVELIVLNIGKD  399 (813)
Q Consensus       385 ~kG-~v~l~~~~~~~~  399 (813)
                      ..| ++++.+.+.+++
T Consensus       348 GIGFTmSlFI~~LAf~  363 (423)
T PRK14853        348 GIGFTVSLLIGELAFG  363 (423)
T ss_pred             HHHHHHHHHHHHhhcC
Confidence            666 778888888883

>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]

Probab=99.70  E-value=2.1e-15  Score=154.75  Aligned_cols=343  Identities=16%  Similarity=0.208  Sum_probs=236.8

Q ss_pred             HHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHH
Q 003517           42 CLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSI  121 (813)
Q Consensus        42 ~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l  121 (813)
                      +.+.+++..--++-+++-+...+--.+.|+++||+++++.++..   . .+......-++.+-+..=.|.+++|+.-..+
T Consensus        20 ~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~---w-gn~d~it~ei~RvvLcvqvfava~eLPr~Y~   95 (467)
T KOG4505|consen   20 GFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNS---W-GNKDYITYEISRVVLCVQVFAVAMELPRAYM   95 (467)
T ss_pred             hHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCcc---c-cCcchhhhhhhhhhHhHHHHHHHHhccHHHH
Confidence            34445555555556677677777778899999999988765421   0 1122444557777788889999999999999


Q ss_pred             HhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHc---CccCChhHHHHH
Q 003517          122 LRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAEL---KLLTTDLGRIAM  198 (813)
Q Consensus       122 ~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el---~l~~s~~g~l~l  198 (813)
                      .++++..+.+-..-++.-+++.+++.|.+..    ..++ ..++.+++.++.|+|.....+..+-   |..+.++..+..
T Consensus        96 l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p----~lnf-~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~  170 (467)
T KOG4505|consen   96 LEHWRSIFVLLLPVMIIGWLVSFGFVYALIP----NLNF-LTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLA  170 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cccH-HHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHH
Confidence            9999998877666666666666655555542    2233 4678899999999987666666644   345778889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcC------Cchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHH
Q 003517          199 SAAAVNDVAAWVLLALAIALSSS------SSSL---IAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCI  269 (813)
Q Consensus       199 s~a~i~D~~~~~ll~l~~~~~~~------~~~~---~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~  269 (813)
                      +++..||..++.++.+.+.+...      +..+   ..++--...+.++.+++++.|..+++-.++.   --..|+|+.+
T Consensus       171 AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkr---lid~eSfl~~  247 (467)
T KOG4505|consen  171 AESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKR---LIDRESFLIF  247 (467)
T ss_pred             HhcCCCCCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHHHHH
Confidence            99999999999998877765433      1111   1122222223344444555555555544443   2346888999


Q ss_pred             HHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCchHHHH-HHHHHHHHHhhHHHHHHHhccccchhhhhch----hhH
Q 003517          270 TLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLI-EKIEDMVSGLFLPLYFAASGLKTNVATIRGA----TSW  344 (813)
Q Consensus       270 ~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~~~l~-~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~----~~~  344 (813)
                      -+.+++.++.+.+.+|.+-++-.|.||.+++-+..+.++.. .++..+...++.-.||++.|..++++.++.+    ..|
T Consensus       248 ~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vw  327 (467)
T KOG4505|consen  248 YVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVW  327 (467)
T ss_pred             HHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHH
Confidence            99999999999999999999999999999997666655443 3566777778888999999999998877543    245


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHhhhhHHHHHHHHhh
Q 003517          345 GLLLLVILNACFGKIVGTVVVAWSC--KVPLRESLALGFIMNTKGLVELIVLNIG  397 (813)
Q Consensus       345 ~~~~~ii~~~~~~K~~~~~l~~~~~--~~~~re~~~lgl~l~~kG~v~l~~~~~~  397 (813)
                      -.+++-+.+.+.-|+.++++.-...  =.+|||++++|. .+|.|.-++..+..+
T Consensus       328 rlvilsi~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~alla  381 (467)
T KOG4505|consen  328 RLVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLA  381 (467)
T ss_pred             HHHHHHHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHH
Confidence            5444444444444544444332221  127999999999 799998877666554

>PRK11175 universal stress protein UspE; Provisional

Probab=99.65  E-value=2.4e-15  Score=163.56  Aligned_cols=281  Identities=11%  Similarity=0.089  Sum_probs=165.7

Q ss_pred             eeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchH-HHHHHHHhh
Q 003517          454 RILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDY-IVIAFEAYQ  532 (813)
Q Consensus       454 riLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~af~~~~  532 (813)
                      |||+|++..+.....++.+..++..  ...+++++|+++-.....+.........+......   +..++ +.+..+.+.
T Consensus         5 ~ILv~~D~s~~~~~al~~a~~lA~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~   79 (305)
T PRK11175          5 NILVVIDPNQDDQPALRRAVYLAQR--NGGKITAFLPIYDFSYEMTTLLSPDEREAMRQGVI---SQRTAWIREQAKPYL   79 (305)
T ss_pred             eEEEEcCCCccccHHHHHHHHHHHh--cCCCEEEEEeccCchhhhhcccchhHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence            6999999999999888887777633  45679999987532211110000000000000000   01111 112222222


Q ss_pred             hcCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCCceEEEecCCCC
Q 003517          533 QLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVDRGLG  612 (813)
Q Consensus       533 ~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgIlvdrg~~  612 (813)
                       ..+++++......  .+.++.|++.|+++++||||+|+|++....+.+.+      ..-+++++++||||.+.-++.. 
T Consensus        80 -~~~~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~g------s~~~~l~~~~~~pvlvv~~~~~-  149 (305)
T PRK11175         80 -DAGIPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFT------PTDWHLLRKCPCPVLMVKDQDW-  149 (305)
T ss_pred             -hcCCceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccC------hhHHHHHhcCCCCEEEeccccc-
Confidence             2356665544332  57789999999999999999999987655544433      3356899999999977643211 


Q ss_pred             CCCcccccccceeEEEecCCCcCh-------HHHHHHHHHHhcCC-CeEEEEEEeecCCCCCcccCCCCCCcccccccCC
Q 003517          613 GTTQVVASEVSYSVVVPFFGGLDD-------CEALAYGMRMAEHP-GIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRG  684 (813)
Q Consensus       613 ~~~~~~~~~~~~~i~v~f~GG~dd-------reAL~~a~rma~~~-~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~  684 (813)
                              ...++|+++.+|++++       +.|+++|.++|+.. +++++++++.+....... .+     +.- ...+
T Consensus       150 --------~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~-~~-----~~~-~~~~  214 (305)
T PRK11175        150 --------PEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIA-IE-----LPE-FDPS  214 (305)
T ss_pred             --------CCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhcc-cc-----ccc-cchh
Confidence                    1246899999998753       67999999999887 999999999753221100 00     000 0001


Q ss_pred             CCccccH---HHHHHHHHhhhccCCCCeEEEEEEecChHHHHHHHhccC--CCcEEEEccCCCCCCCCCCccccccCccc
Q 003517          685 DNDQVGD---DAIISDFKSIASKNQESITLEERLVESSQEIAGVLKSMN--KCNLFLVGRMAPTAPLMDTKSAEYCSELG  759 (813)
Q Consensus       685 ~~~~~~d---~~~l~~~~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~--~~DLviVGr~~~~~gl~~w~~~e~~~eLG  759 (813)
                      +.++...   ++.++++.++.  +   +...+..+..|.....+++..+  +.||+|+|.++ .+|+.+|       =+|
T Consensus       215 ~~~~~~~~~~~~~l~~~~~~~--~---~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~-~~~~~~~-------llG  281 (305)
T PRK11175        215 VYNDAIRGQHLLAMKALRQKF--G---IDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVG-RTGLSAA-------FLG  281 (305)
T ss_pred             hHHHHHHHHHHHHHHHHHHHh--C---CChhheeeccCCHHHHHHHHHHHhCCCEEEECCCc-cCCCcce-------eec
Confidence            1111111   13444444433  1   1111222323322222333333  39999999998 7888776       378


Q ss_pred             cchhhhhcCCCCCcccEEEEe
Q 003517          760 PVGCFLASSEFSTTASVVVLQ  780 (813)
Q Consensus       760 ~igd~las~d~~~~~SvLvvq  780 (813)
                      -..+-++..   .+++||||.
T Consensus       282 S~a~~v~~~---~~~pVLvv~  299 (305)
T PRK11175        282 NTAEHVIDH---LNCDLLAIK  299 (305)
T ss_pred             chHHHHHhc---CCCCEEEEc
Confidence            888888875   778999996

>TIGR00773 NhaA Na+/H+ antiporter NhaA

Probab=99.47  E-value=1e-11  Score=133.98  Aligned_cols=270  Identities=21%  Similarity=0.330  Sum_probs=166.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhHHH---hcchhh---HHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCChhHHHHHHH
Q 003517           96 VLETLANIGLLFFLFLVGLELDIKSIL---RTGKKS---LGIALAGITLPFALGIGTSFVLRST-VLKGANQAPLLVFMG  168 (813)
Q Consensus        96 ~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~l~lg  168 (813)
                      ..+.+.+--+.+|.|.+|+|+.-+.+.   ++.||+   ..-++.|+++|.++-..+..  ... ...+|.. +.+    
T Consensus        52 l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~~~n~--~~~~~~~GW~I-P~A----  124 (373)
T TIGR00773        52 LLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYLAFNA--NDPITREGWAI-PAA----  124 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCCcccCcccc-ccH----
Confidence            445566666778999999999887775   233333   34566777888654322111  100 0123322 111    


Q ss_pred             HHHhhccHHHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 003517          169 VSLSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRPV  248 (813)
Q Consensus       169 ~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~  248 (813)
                         +=++|++-...+-..+ .+..+....++-+++||+.++++.++...     +.....+.......+.+         
T Consensus       125 ---TDiAFalgvlallG~~-vP~~lr~FLl~LAIvDDlgaI~vIA~FYt-----~~i~~~~L~~a~~~~~~---------  186 (373)
T TIGR00773       125 ---TDIAFALGVMALLGKR-VPLALKIFLLALAIIDDLGAIVIIALFYT-----NDLSMAALLVAAVAIAV---------  186 (373)
T ss_pred             ---HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhHhheeeecC-----CCCCHHHHHHHHHHHHH---------
Confidence               1122332222222223 68888999999999999999988776541     22222333232221111         


Q ss_pred             HHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCc----hHHHHHHHHHHHHHhhHHH
Q 003517          249 LSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPF----AGVLIEKIEDMVSGLFLPL  324 (813)
Q Consensus       249 ~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~----~~~l~~kl~~~~~~~~~pl  324 (813)
                       .++.+|..    +++...+..+. ++..+++ ...|+|+.+|+|++|+++|...+.    .+++++.+++.+..+++|+
T Consensus       187 -l~~~~~~~----v~~~~~y~~lg-vllW~~~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lilPl  259 (373)
T TIGR00773       187 -LAVLNRCG----VRRLGPYMLVG-VILWFAV-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLILPL  259 (373)
T ss_pred             -HHHHHHcC----CchhhHHHHHH-HHHHHHH-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence             12233331    23333333333 3333333 799999999999999999975333    3566677777788999999


Q ss_pred             H-HHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHhhhh-HHHHH
Q 003517          325 Y-FAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSC----------KVPLRESLALGFIMNTKG-LVELI  392 (813)
Q Consensus       325 F-F~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~re~~~lgl~l~~kG-~v~l~  392 (813)
                      | |+..|.++|...+.. ........+++..+++|.+|++..++..          +++|++-.-+|+ ++..| ++++.
T Consensus       260 FAFanAGv~l~~~~~~~-~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~-L~GIGFTmSlf  337 (373)
T TIGR00773       260 FAFANAGVSLQGVSLNG-LTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGV-LCGIGFTMSIF  337 (373)
T ss_pred             HHHHhcCeeeecCcchh-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHH
Confidence            9 999999998755433 2223355667777899999998887752          567888888887 46666 67777


Q ss_pred             HHHhhcc
Q 003517          393 VLNIGKD  399 (813)
Q Consensus       393 ~~~~~~~  399 (813)
                      +.+.+.+
T Consensus       338 I~~LAf~  344 (373)
T TIGR00773       338 IASLAFG  344 (373)
T ss_pred             HHHHhcC
Confidence            8888874

These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.

>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=99.23  E-value=6.4e-09  Score=114.17  Aligned_cols=269  Identities=22%  Similarity=0.338  Sum_probs=162.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhHHHh---cchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHH
Q 003517           95 TVLETLANIGLLFFLFLVGLELDIKSILR---TGKKS---LGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMG  168 (813)
Q Consensus        95 ~~l~~l~~lgl~~llF~~Gle~d~~~l~~---~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg  168 (813)
                      ...+.+.+.-+.+|.|.+|+|+.-+.+..   +.|++   ..-++.|+++|.++-..+..  ......+|..        
T Consensus        67 sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~~~n~--~~~~~~GWgI--------  136 (438)
T PRK14856         67 SLHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYFFLNA--DTPSQHGFGI--------  136 (438)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHhheec--CCCccCcccc--------
Confidence            34556677777889999999998777652   33333   34566777777654322211  1000112322        


Q ss_pred             HHHhhccHHHHHHHHHHc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 003517          169 VSLSITAFPVLARILAEL-KLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRP  247 (813)
Q Consensus       169 ~~ls~Ts~~vv~~iL~el-~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~  247 (813)
                       -+ .|+.+....++.=+ +..++.+....++-+++||+.++++.++...     +.....|..+...++.++       
T Consensus       137 -Pm-ATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt-----~~i~~~~L~~a~~~~~~l-------  202 (438)
T PRK14856        137 -PM-ATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT-----TNLKFAWLLGALGVVLVL-------  202 (438)
T ss_pred             -cc-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC-----CCCcHHHHHHHHHHHHHH-------
Confidence             11 22333333333222 2257788899999999999999988776541     222333333332222111       


Q ss_pred             HHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCc----------------------
Q 003517          248 VLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPF----------------------  305 (813)
Q Consensus       248 ~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~----------------------  305 (813)
                         ++.+|..    ++....++.+.+++..  ....-|+|+.++..++|+++|..++.                      
T Consensus       203 ---~~ln~~~----v~~~~~Y~~~G~~lW~--~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (438)
T PRK14856        203 ---AVLNRLN----VRSLIPYLLLGVLLWF--CVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGAL  273 (438)
T ss_pred             ---HHHHHcC----CccccHHHHHHHHHHH--HHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccccc
Confidence               2223321    2222334444443333  34468999999999999999953221                      


Q ss_pred             ----------------------hHHHHHHHHHHHHHhhHHHH-HHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHH
Q 003517          306 ----------------------AGVLIEKIEDMVSGLFLPLY-FAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGT  362 (813)
Q Consensus       306 ----------------------~~~l~~kl~~~~~~~~~plF-F~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~  362 (813)
                                            .+++++.+.+.+..+.+|+| |...|..++......  .-.....+++..++||.+|.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~--~~pv~lGI~~GLvvGK~lGI  351 (438)
T PRK14856        274 LTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLE--VDKVLLGVILGLCLGKPLGI  351 (438)
T ss_pred             cccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhc--cCcHHHHHHHHHHhcchHHH
Confidence                                  14566778888888999999 999999998542211  11233445566678999988


Q ss_pred             HHHHHhc----------CCChHHHHHHHHHHhhhh-HHHHHHHHhhcc
Q 003517          363 VVVAWSC----------KVPLRESLALGFIMNTKG-LVELIVLNIGKD  399 (813)
Q Consensus       363 ~l~~~~~----------~~~~re~~~lgl~l~~kG-~v~l~~~~~~~~  399 (813)
                      +..++..          +++|++-+-.|+ ++..| ++++.+.+.+++
T Consensus       352 ~~~s~lavkl~~a~lP~g~~w~~l~gv~~-LaGIGFTmSLFIa~LAF~  398 (438)
T PRK14856        352 FLITFISEKLKITARPKGISWWHILGAGL-LAGIGFTMSMFISNLAFT  398 (438)
T ss_pred             HHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence            8777652          567888888887 56666 677888888884

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea

Probab=99.21  E-value=1.3e-10  Score=109.42  Aligned_cols=131  Identities=21%  Similarity=0.313  Sum_probs=97.6

Q ss_pred             eeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHHhhh
Q 003517          454 RILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQ  533 (813)
Q Consensus       454 riLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~  533 (813)
                      |||+|++++++...+++.+..++..  .+..++++|+++.+.......  ... .         ....++.++.+..+..
T Consensus         1 ~ILv~vd~s~~~~~~l~~a~~la~~--~~~~v~ll~v~~~~~~~~~~~--~~~-~---------~~~~~~~~~~~~~~~~   66 (132)
T cd01988           1 RILVPVANPNTARDLLELAAALARA--QNGEIIPLNVIEVPNHSSPSQ--LEV-N---------VQRARKLLRQAERIAA   66 (132)
T ss_pred             CEEEecCCchhHHHHHHHHHHHhhc--CCCeEEEEEEEecCCCCCcch--hHH-H---------HHHHHHHHHHHHHHhh
Confidence            6999999999999999999999754  577899999999765433210  000 0         0234556666666655


Q ss_pred             cCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCCceEEE
Q 003517          534 LSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIF  606 (813)
Q Consensus       534 ~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgIl  606 (813)
                      ..++.+++....+  .+..++||+.|+++++|+|++|+|+++...+.+      +++++.+|++++||||+|+
T Consensus        67 ~~g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~------lGs~~~~v~~~~~~pvlvv  131 (132)
T cd01988          67 SLGVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLRDRL------FGGVIDQVLESAPCDVAVV  131 (132)
T ss_pred             hcCCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCcccee------cCchHHHHHhcCCCCEEEe
Confidence            5567777766555  468999999999999999999999887664443      3345779999999999875

Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio

>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]

Probab=99.19  E-value=7e-12  Score=138.94  Aligned_cols=368  Identities=14%  Similarity=0.179  Sum_probs=231.0

Q ss_pred             HHHHHHHHhcccC--CChhHHHHHHHHhhcccccCC--chhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHH
Q 003517           47 FTRFLAFLLKPLR--QPRVIAEIIGGVLLGPSALGR--SERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSIL  122 (813)
Q Consensus        47 ~~~~~~~l~~~l~--~P~ii~~ilaGiilGP~~lg~--~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~  122 (813)
                      ++.+.--+..+++  .|.-...|+.|+++|-...+.  +.+     +.-++    +.+--.-+--++|-+|.-|.-+.+.
T Consensus        53 LaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~~-----~~L~s----~vFFlyLLPPIvlDAGYfMp~r~Ff  123 (670)
T KOG1966|consen   53 LAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIAP-----FFLES----DVFFLYLLPPIVLDAGYFMPNRAFF  123 (670)
T ss_pred             HHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhcccc-----ccccc----cchhhhhcCHHHhcccccCccHHHH
Confidence            3344333444444  788888899999998544322  111     00000    0111111223789999999999999


Q ss_pred             hcchhhHHHHHHHHHHHHHHHHHHHHHHHH--hhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHHHHHHH
Q 003517          123 RTGKKSLGIALAGITLPFALGIGTSFVLRS--TVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSA  200 (813)
Q Consensus       123 ~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~  200 (813)
                      .|...++..|+.|.+.-.+.-.+..|.+..  .++...+. ...+++|...|..+|..|..+.+|.. .|.-+=-++.++
T Consensus       124 ~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~~gl-ld~LlFgSLIsAVDPVAVLaVFEEih-VNe~LfI~VFGE  201 (670)
T KOG1966|consen  124 ENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMSIGL-LDILLFGSLISAVDPVAVLAVFEEIH-VNEVLFIIVFGE  201 (670)
T ss_pred             hccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchH-HHHHHHHHHHHhcCchhhhhhhhhhc-cccEEEeeeehh
Confidence            999999999999998854433333333322  22212222 35678899999999999999999999 788888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCC-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHH
Q 003517          201 AAVNDVAAWVLLALAIALSSSS-------SSLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCITLSM  273 (813)
Q Consensus       201 a~i~D~~~~~ll~l~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~  273 (813)
                      +++||.+.++++-+...+..-+       +.......++...+.+++++.+++.+.....|.+..   ++-..-++++.+
T Consensus       202 SLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~---vrviePvfif~~  278 (670)
T KOG1966|consen  202 SLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKH---VRVLEPVFIFLL  278 (670)
T ss_pred             hhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcc---eeeecchhhhhH
Confidence            9999999999987766543221       001111122222223334444555555555555532   222234778999


Q ss_pred             HHHHHHHHHHHChhHHHHHHHHhhhcCCC--CCchHHHHHHHHH---HHHHhhHHHHHHHhccccchhhhhchhhHHHHH
Q 003517          274 VLAASFVTDTIGIHALFGAFVVGIIMPKE--GPFAGVLIEKIED---MVSGLFLPLYFAASGLKTNVATIRGATSWGLLL  348 (813)
Q Consensus       274 ~l~~~~~ae~~g~~~~lgaf~aGL~l~~~--~~~~~~l~~kl~~---~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~  348 (813)
                      ...+|..+|.+++|++++..+.|+++...  ....++....+.+   ..+..--++-|++.|.++=-.  +..+.|..++
T Consensus       279 pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~--~h~wd~~Fi~  356 (670)
T KOG1966|consen  279 PYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS--NHHWDFAFIC  356 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC--cceeehhhhh
Confidence            99999999999999999999999999742  1122222222222   234556677788888876322  2224566666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChH-----HHHHHHHHHHH
Q 003517          349 LVILNACFGKIVGTVVVAWSC------KVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQ-----AFAILVLMALF  417 (813)
Q Consensus       349 ~ii~~~~~~K~~~~~l~~~~~------~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~-----~~~~lvl~~vv  417 (813)
                      +-++.+.+.|++++...+++.      +++.+|.+.++.+ +-||.+++.+...--...+...+     +..++.+++.+
T Consensus       357 ~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~LV~lid~~~vp~K~~Fvttti~VIfFTVfl  435 (670)
T KOG1966|consen  357 LTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGLVVLIDGAKVPAKNMFVTTTIAVIFFTVFL  435 (670)
T ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeEEEEeccccCCcccceEeeeeEEEeeeeee
Confidence            667777888999988777764      5677888888775 77887765544332223333233     33334455555


Q ss_pred             HHHhHHHHHHHhhc
Q 003517          418 TTFITTPILMAIYK  431 (813)
Q Consensus       418 ~t~i~~plv~~l~~  431 (813)
                      ..+..-|+++|+--
T Consensus       436 QGiTIkplvk~L~V  449 (670)
T KOG1966|consen  436 QGITIKPLVKFLKV  449 (670)
T ss_pred             cccchHHHHHHHcc
Confidence            56667899998753

>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed

Probab=99.11  E-value=2.3e-08  Score=108.19  Aligned_cols=269  Identities=21%  Similarity=0.294  Sum_probs=161.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhHHHh---cchhh---HHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCChhHHHHHHH
Q 003517           96 VLETLANIGLLFFLFLVGLELDIKSILR---TGKKS---LGIALAGITLPFALGIGTSFVLRST-VLKGANQAPLLVFMG  168 (813)
Q Consensus        96 ~l~~l~~lgl~~llF~~Gle~d~~~l~~---~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~l~lg  168 (813)
                      ..+.+.+--+.+|.|.+|+|+.-+.+..   +.|++   +.-++.|+++|.++-..+..  +.. ...+|..        
T Consensus        59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~~~n~--g~~~~~~GWgI--------  128 (389)
T PRK09560         59 LLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAAFNY--NNPETLRGWAI--------  128 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHheeec--CCCcccCcccc--------
Confidence            3455666667789999999998777652   33332   34566777888654332211  100 0123332        


Q ss_pred             HHHhhccHHHHHHHHHHc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 003517          169 VSLSITAFPVLARILAEL-KLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRP  247 (813)
Q Consensus       169 ~~ls~Ts~~vv~~iL~el-~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~  247 (813)
                       -+ .|+.+....++.=+ +..+..+....++-+++||+.++++.++...     +.....|......++.++       
T Consensus       129 -Pm-ATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt-----~~i~~~~L~~a~~~~~~l-------  194 (389)
T PRK09560        129 -PA-ATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT-----SDLSLPALALAAIAIAVL-------  194 (389)
T ss_pred             -cc-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC-----CCCCHHHHHHHHHHHHHH-------
Confidence             11 22333333333322 2367888999999999999999988776541     222333333322221111       


Q ss_pred             HHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCc------hHHHHHHHHHHHHHhh
Q 003517          248 VLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPF------AGVLIEKIEDMVSGLF  321 (813)
Q Consensus       248 ~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~------~~~l~~kl~~~~~~~~  321 (813)
                         ++.+|..    .+....+..+.+++..  ....-|+|+.++..++|+++|...+.      .+++++++++.+..+.
T Consensus       195 ---~~ln~~~----v~~~~~Y~~~G~~lW~--~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~I  265 (389)
T PRK09560        195 ---FLLNRLG----VTKLTPYLIVGAILWF--AVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAI  265 (389)
T ss_pred             ---HHHHHcC----CccchHHHHHHHHHHH--HHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhh
Confidence               2223321    2233344444443333  33468999999999999999963221      3678899999988888


Q ss_pred             HHHH-HHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHhhhh-HH
Q 003517          322 LPLY-FAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSC----------KVPLRESLALGFIMNTKG-LV  389 (813)
Q Consensus       322 ~plF-F~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~re~~~lgl~l~~kG-~v  389 (813)
                      +|+| |...|..++-..+.+ ..-.....+++..++||.+|.++.++..          +++|++-..+|+ ++..| ++
T Consensus       266 lPlFAlaNAGV~l~~~~~~~-~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~-L~GIGFTm  343 (389)
T PRK09560        266 LPLFAFANAGVSLAGISLSS-LTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSV-LCGIGFTM  343 (389)
T ss_pred             HHHHHhhcCCeeecCCcHHh-ccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHH
Confidence            9999 889999884222221 1112334455666789999888777652          457888888887 46666 67


Q ss_pred             HHHHHHhhcc
Q 003517          390 ELIVLNIGKD  399 (813)
Q Consensus       390 ~l~~~~~~~~  399 (813)
                      ++.+.+.+..
T Consensus       344 SLFIa~LAF~  353 (389)
T PRK09560        344 SLFIGSLAFG  353 (389)
T ss_pred             HHHHHHhhcC
Confidence            7788888873

>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=99.10  E-value=6.4e-08  Score=105.92  Aligned_cols=265  Identities=23%  Similarity=0.297  Sum_probs=159.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhHHH---hcchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHH
Q 003517           96 VLETLANIGLLFFLFLVGLELDIKSIL---RTGKKS---LGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGV  169 (813)
Q Consensus        96 ~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~  169 (813)
                      ..+.+.+--+.+|.|.+|+|+.-+.+.   ++.|++   ..-++.|+++|.++-..+..  +.....+|.         +
T Consensus        63 l~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~~~n~--~~~~~~GWg---------I  131 (423)
T PRK14855         63 LEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYTALNA--GGPGASGWG---------V  131 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHheeec--CCCccCccc---------c
Confidence            345566666778999999999887774   233333   34566777777654222111  100011222         2


Q ss_pred             HHhhccHHHHHHHHHHcC-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 003517          170 SLSITAFPVLARILAELK-LLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRPV  248 (813)
Q Consensus       170 ~ls~Ts~~vv~~iL~el~-l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~  248 (813)
                      -+ .|+.+....+|.=+| ..+..+....++-+++||+.++++.++...   +  .....+..+...++.++        
T Consensus       132 Pm-ATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~--~i~~~~L~~a~~~~~~l--------  197 (423)
T PRK14855        132 PM-ATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT---S--GLNLLALLLAALTWALA--------  197 (423)
T ss_pred             cc-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC---C--CCCHHHHHHHHHHHHHH--------
Confidence            11 233333333333232 357788899999999999999988776541   1  22223332322211111        


Q ss_pred             HHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCC-c----------------------
Q 003517          249 LSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGP-F----------------------  305 (813)
Q Consensus       249 ~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~-~----------------------  305 (813)
                        ++.+|..    ++....++.+.+++..  ....-|+|+.++..+.|+++|..++ .                      
T Consensus       198 --~~ln~~~----v~~~~~Y~~~G~~lW~--~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (423)
T PRK14855        198 --LLAGRLG----VTSLKIYAVLGALLWF--FVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGAR  269 (423)
T ss_pred             --HHHHHcC----CccccHHHHHHHHHHH--HHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHH
Confidence              2223321    2233334444443333  3446899999999999999986311 1                      


Q ss_pred             --------------hHHHHHHHHHHHHHhhHHHH-HHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 003517          306 --------------AGVLIEKIEDMVSGLFLPLY-FAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSC-  369 (813)
Q Consensus       306 --------------~~~l~~kl~~~~~~~~~plF-F~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~-  369 (813)
                                    .+++++++.+.+..+.+|+| |...|..++-.. ..    .....+++..++||.+|.++.++.. 
T Consensus       270 ~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~----pv~lGI~~GLvvGK~lGI~~~s~lav  344 (423)
T PRK14855        270 LRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LG----TVSLGVFLGLLLGKPLGVVGGAWLAV  344 (423)
T ss_pred             HHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CC----cHHHHHHHHHHhcchHHHHHHHHHHH
Confidence                          24677788888888999999 889999885333 22    1233445566789999888877652 


Q ss_pred             ---------CCChHHHHHHHHHHhhhh-HHHHHHHHhhcc
Q 003517          370 ---------KVPLRESLALGFIMNTKG-LVELIVLNIGKD  399 (813)
Q Consensus       370 ---------~~~~re~~~lgl~l~~kG-~v~l~~~~~~~~  399 (813)
                               +++|++-.-+|+ ++..| ++++.+.+.+++
T Consensus       345 kl~~a~lP~g~~w~~l~gv~~-LaGIGFTmSLFIa~LAF~  383 (423)
T PRK14855        345 RLGLASLPRRVNWLHMLGAGL-LAGIGFTMSLFISNLAFA  383 (423)
T ss_pred             HhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhCC
Confidence                     567888888887 56666 777888888884

>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=99.07  E-value=5.4e-08  Score=104.83  Aligned_cols=271  Identities=17%  Similarity=0.245  Sum_probs=160.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhHHH---hcchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHH
Q 003517           96 VLETLANIGLLFFLFLVGLELDIKSIL---RTGKKS---LGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGV  169 (813)
Q Consensus        96 ~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~  169 (813)
                      ..+.+.+--+.+|.|.+|+|+.-+.+.   ++.|++   ..-++.|+++|.++-..+..  ......+|.. +.+     
T Consensus        56 l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~~n~--~~~~~~GW~I-P~A-----  127 (383)
T PRK14854         56 LMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLSINH--DIKVINGWAI-PSA-----  127 (383)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHhhcc--CCcccCcccc-ccH-----
Confidence            345566666778999999999877764   233333   34566778888764333221  1110123322 111     


Q ss_pred             HHhhccHHHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003517          170 SLSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRPVL  249 (813)
Q Consensus       170 ~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~  249 (813)
                        +=++|++-.-.+-..+ .+..+.-..++-+++||+.++++.++...     +.....+.......+.  +.+      
T Consensus       128 --TDIAFAlgvLallG~r-vP~~lrvFLlaLAIvDDlgAI~VIAlFYt-----~~i~~~~L~~A~~~~~--~l~------  191 (383)
T PRK14854        128 --TDIAFTLGILALLGTR-VPAKLKLLVITIAIFDDIAAIAIIAIFYT-----KSLSLLSLSLGTLFIL--AMI------  191 (383)
T ss_pred             --HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhhhHhheeeecC-----CCccHHHHHHHHHHHH--HHH------
Confidence              1122332222222223 68888889999999999999988776541     1222222222211111  111      


Q ss_pred             HHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCC----chHHHHHHHHHHHHHhhHHHH
Q 003517          250 SLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGP----FAGVLIEKIEDMVSGLFLPLY  325 (813)
Q Consensus       250 ~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~----~~~~l~~kl~~~~~~~~~plF  325 (813)
                       .+.|+..    .+....+..+.+++..  ....-|+|+.++..+.|+++|...+    -.+++++++++.+..+.+|+|
T Consensus       192 -~~nr~~~----v~~~~~Y~~~G~~lW~--~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlF  264 (383)
T PRK14854        192 -ICNRIFK----INRSSVYVVLGFFAWF--CTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFILPVF  264 (383)
T ss_pred             -HHHHhcC----CceehHHHHHHHHHHH--HHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhHHHH
Confidence             1222211    1222334444433333  3457899999999999999996321    136788899999999999999


Q ss_pred             -HHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHhhhh-HHHHHH
Q 003517          326 -FAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSC----------KVPLRESLALGFIMNTKG-LVELIV  393 (813)
Q Consensus       326 -F~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~re~~~lgl~l~~kG-~v~l~~  393 (813)
                       |...|..++-..+.. ..-.....+++..++||.+|.+..++..          +++|++-..+|+ ++..| ++++.+
T Consensus       265 A~aNAGV~l~~~~~~~-~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~-L~GIGFTmSLFI  342 (383)
T PRK14854        265 AFANAGISFSGISFSI-LFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISL-LCGIGFTMSLFI  342 (383)
T ss_pred             HhhcCCeeeccCcHHh-hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHH
Confidence             889999884211211 1112333455666789999888776652          467888888888 56666 778888


Q ss_pred             HHhhcc
Q 003517          394 LNIGKD  399 (813)
Q Consensus       394 ~~~~~~  399 (813)
                      .+.+.+
T Consensus       343 a~LAF~  348 (383)
T PRK14854        343 GVLAFN  348 (383)
T ss_pred             HHhhCC
Confidence            888884

>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed

Probab=99.06  E-value=4.4e-08  Score=105.85  Aligned_cols=269  Identities=22%  Similarity=0.334  Sum_probs=160.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhHHHh---cchhh---HHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCChhHHHHHHH
Q 003517           96 VLETLANIGLLFFLFLVGLELDIKSILR---TGKKS---LGIALAGITLPFALGIGTSFVLRST-VLKGANQAPLLVFMG  168 (813)
Q Consensus        96 ~l~~l~~lgl~~llF~~Gle~d~~~l~~---~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~l~lg  168 (813)
                      ..+.+.+.-+.+|.|.+|+|+.-+.+..   +.|++   ..-++.|+++|.++-..+..  +.. ...+|.. +.     
T Consensus        59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~~~n~--~~~~~~~GWaI-P~-----  130 (388)
T PRK09561         59 LLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYLLFNY--ADPVTREGWAI-PA-----  130 (388)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCCcccCcccc-cc-----
Confidence            4455666667789999999999887742   33333   34566777888654322111  100 0123322 11     


Q ss_pred             HHHhhccHHHHHHHHHHc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 003517          169 VSLSITAFPVLARILAEL-KLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRP  247 (813)
Q Consensus       169 ~~ls~Ts~~vv~~iL~el-~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~  247 (813)
                          .|+.+....++.=+ +..+..+....++-+++||+.++++.++...     +.....+..+....+.++       
T Consensus       131 ----ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt-----~~i~~~~L~~a~~~~~~l-------  194 (388)
T PRK09561        131 ----ATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT-----SDLSMVSLGVAAVAIAVL-------  194 (388)
T ss_pred             ----HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC-----CCccHHHHHHHHHHHHHH-------
Confidence                22322223333222 2367888999999999999999988776541     122222222222211111       


Q ss_pred             HHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCC----chHHHHHHHHHHHHHhhHH
Q 003517          248 VLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGP----FAGVLIEKIEDMVSGLFLP  323 (813)
Q Consensus       248 ~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~----~~~~l~~kl~~~~~~~~~p  323 (813)
                         ++.+|..    .+....+..+.+++..  ....-|+|+.++..+.|+++|...+    -.+++++++++.+..+.+|
T Consensus       195 ---~~ln~~~----v~~~~~Y~~~G~~lW~--~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~IlP  265 (388)
T PRK09561        195 ---AVLNLCG----VRRTSVYILVGVVLWV--AVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLILP  265 (388)
T ss_pred             ---HHHHHcC----CccchHHHHHHHHHHH--HHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeHH
Confidence               2223321    2233344444444333  3346899999999999999996322    1367889999999999999


Q ss_pred             HH-HHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHhhhh-HHHH
Q 003517          324 LY-FAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSC----------KVPLRESLALGFIMNTKG-LVEL  391 (813)
Q Consensus       324 lF-F~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~re~~~lgl~l~~kG-~v~l  391 (813)
                      +| |...|..++-..+.. ..-.....+++..++||.+|.+..++..          +++|++-.-+|+ ++..| ++++
T Consensus       266 lFAfaNAGV~l~~~~~~~-~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~-L~GIGFTmSL  343 (388)
T PRK09561        266 LFAFANAGVSLQGVTLDG-LTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGV-LCGIGFTMSI  343 (388)
T ss_pred             HHHhhcCCeeeccCcHHh-hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHH
Confidence            99 888998883211211 1112233455666789999888777652          457888888887 46666 6777


Q ss_pred             HHHHhhcc
Q 003517          392 IVLNIGKD  399 (813)
Q Consensus       392 ~~~~~~~~  399 (813)
                      .+.+.+++
T Consensus       344 FIa~LAF~  351 (388)
T PRK09561        344 FIASLAFG  351 (388)
T ss_pred             HHHHHhcC
Confidence            78888874

>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]

Probab=98.85  E-value=7.2e-07  Score=92.58  Aligned_cols=256  Identities=20%  Similarity=0.335  Sum_probs=156.8

Q ss_pred             HHHHHHHHhhccChhHHH---hcchhhH---HHHHHHHHHHHHHHHHHHHHHHHhh---hcCCChhHHHHHHHHHHhhcc
Q 003517          105 LLFFLFLVGLELDIKSIL---RTGKKSL---GIALAGITLPFALGIGTSFVLRSTV---LKGANQAPLLVFMGVSLSITA  175 (813)
Q Consensus       105 l~~llF~~Gle~d~~~l~---~~~~~~~---~ia~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~l~lg~~ls~Ts  175 (813)
                      ..+|.+.+|+|+..+.+.   ++++++.   .-++.|++.|.++-    ..+...-   ..+|..          -+.|+
T Consensus        71 MAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAliy----~~~n~~~p~~~~GWaI----------P~ATD  136 (390)
T COG3004          71 MAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALIY----LALNAGDPATLEGWAI----------PMATD  136 (390)
T ss_pred             HHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhHh----heeecCChhhhcCcCc----------ccHHH
Confidence            455778899999988875   3444432   34556666665432    1221111   112322          12334


Q ss_pred             HHHHHHHHHHc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003517          176 FPVLARILAEL-KLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRPVLSLMAR  254 (813)
Q Consensus       176 ~~vv~~iL~el-~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~  254 (813)
                      .+....++.=+ +..++.+.-..++-+++||+-++++.++...     +..+..+...+.+... ++     .   .+.+
T Consensus       137 iAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt-----~~Ls~~al~~a~~~i~-vL-----~---~lN~  202 (390)
T COG3004         137 IAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT-----TDLSMAALGIAALAIA-VL-----A---VLNR  202 (390)
T ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc-----CCccHHHHHHHHHHHH-HH-----H---HHHH
Confidence            33334444333 3468899999999999999999888776542     1222222222221111 11     1   1222


Q ss_pred             hCCCCCCchhHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCC----CchHHHHHHHHHHHHHhhHHHH-HHHh
Q 003517          255 RSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEG----PFAGVLIEKIEDMVSGLFLPLY-FAAS  329 (813)
Q Consensus       255 ~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~----~~~~~l~~kl~~~~~~~~~plF-F~~~  329 (813)
                      ..     ++....+++...++..+.+  .-|+|..++..+.|+++|-..    +.-+++++.+.+.+..+.+|+| |...
T Consensus       203 ~~-----v~~l~~Y~~~gviLW~~vl--kSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFaFaNA  275 (390)
T COG3004         203 LG-----VRRLSPYLLVGVILWIAVL--KSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLFAFANA  275 (390)
T ss_pred             hC-----chhhhHHHHHHHHHHHHHH--HhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHHHccC
Confidence            21     1222234455555555443  679999999999999999433    2346788888899899999999 9999


Q ss_pred             ccccc---hhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHhhhh-HHHHHHHH
Q 003517          330 GLKTN---VATIRGATSWGLLLLVILNACFGKIVGTVVVAWSC----------KVPLRESLALGFIMNTKG-LVELIVLN  395 (813)
Q Consensus       330 G~~~d---l~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~re~~~lgl~l~~kG-~v~l~~~~  395 (813)
                      |.+++   ...+.+    .+...+++..++||.+|.+..++..          +.+|++-...++ ++..| .+++.+..
T Consensus       276 Gvsl~g~~~~~l~s----~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~i-LcGIGFTMSlFI~~  350 (390)
T COG3004         276 GVSLQGVSLSGLTS----PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSI-LCGIGFTMSLFIAS  350 (390)
T ss_pred             Cccccccccccccc----chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHH-HHhhhHHHHHHHHH
Confidence            99887   444443    2344556667889999988887652          557888777777 45566 67777777


Q ss_pred             hhccc
Q 003517          396 IGKDR  400 (813)
Q Consensus       396 ~~~~~  400 (813)
                      .+++.
T Consensus       351 LAf~~  355 (390)
T COG3004         351 LAFGS  355 (390)
T ss_pred             HhcCC
Confidence            77765

>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH

Probab=98.78  E-value=3.2e-08  Score=106.93  Aligned_cols=272  Identities=21%  Similarity=0.383  Sum_probs=150.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhHHH---hcchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHH
Q 003517           95 TVLETLANIGLLFFLFLVGLELDIKSIL---RTGKKS---LGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMG  168 (813)
Q Consensus        95 ~~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg  168 (813)
                      ...+.+.+--+.+|.|.+|+|+.-+.+.   ++.||+   ..-++.|+++|.++-..    +..    +.+  ...--+|
T Consensus        54 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalIyl~----~n~----~~~--~~~~GW~  123 (378)
T PF06965_consen   54 SLHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALIYLA----FNA----GGP--EAAHGWA  123 (378)
T ss_dssp             EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGG----G------SST--THHHHTS
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHHHhe----eec----CCC--CcCceEE
Confidence            3455666777788999999999887764   233433   34456677777653221    111    111  0111222


Q ss_pred             HHHhhccHHHHHHHHHHc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 003517          169 VSLSITAFPVLARILAEL-KLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRP  247 (813)
Q Consensus       169 ~~ls~Ts~~vv~~iL~el-~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~  247 (813)
                      +- ..|+.+....++.=+ +..+..+....++-+++||+.++++.++...     +.....+.......+ .+.      
T Consensus       124 IP-~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt-----~~i~~~~L~~a~~~~-~~l------  190 (378)
T PF06965_consen  124 IP-MATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT-----DGISLLWLLLAAAAL-LLL------  190 (378)
T ss_dssp             SS-S---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS----------HHHHHHHHHHH-HHH------
T ss_pred             ec-ccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC-----CCCCHHHHHHHHHHH-HHH------
Confidence            11 233444444444333 2357788899999999999999988876542     122222222222111 111      


Q ss_pred             HHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCch--------HHHHHHHHHHHHH
Q 003517          248 VLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFA--------GVLIEKIEDMVSG  319 (813)
Q Consensus       248 ~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~--------~~l~~kl~~~~~~  319 (813)
                         |+.+|..    .+....+..+.+++  -+....-|+|+.++..+.|+++|..++.+        +++++++++.++.
T Consensus       191 ---~~l~r~~----v~~~~~Y~~~G~~l--W~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~  261 (378)
T PF06965_consen  191 ---FVLNRLG----VRSLWPYLLLGILL--WYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAF  261 (378)
T ss_dssp             ---HHHHHTT-------THHHHHHHHHH--HHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHH
T ss_pred             ---HHHHHCC----CceehHHHHHHHHH--HHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhh
Confidence               2223321    12223333333322  22334679999999999999999754442        4888899999989


Q ss_pred             hhHHHH-HHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHhhhh-
Q 003517          320 LFLPLY-FAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSC----------KVPLRESLALGFIMNTKG-  387 (813)
Q Consensus       320 ~~~plF-F~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~re~~~lgl~l~~kG-  387 (813)
                      +.+|+| |...|..++-..+... .-.....+++..++||.+|.+..++..          +++|++-...|+ ++..| 
T Consensus       262 ~IlPlFAlaNAGV~l~~~~~~~~-~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~-LaGIGF  339 (378)
T PF06965_consen  262 VILPLFALANAGVSLSGSSLGDL-TSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGL-LAGIGF  339 (378)
T ss_dssp             THHHHHHHHHS----SSS---TH-HHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHH-HTT--H
T ss_pred             hhHHhHhheeCceEEecCchHhh-hChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHH
Confidence            999999 9999999886554321 222233445566789999987776542          346677666776 46666 


Q ss_pred             HHHHHHHHhhccc
Q 003517          388 LVELIVLNIGKDR  400 (813)
Q Consensus       388 ~v~l~~~~~~~~~  400 (813)
                      ++++.+.+.+++.
T Consensus       340 TmSLFIa~LAF~~  352 (378)
T PF06965_consen  340 TMSLFIAGLAFDD  352 (378)
T ss_dssp             HHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHcCC
Confidence            6788888888876

NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases

Probab=98.65  E-value=1.5e-07  Score=90.54  Aligned_cols=138  Identities=12%  Similarity=0.198  Sum_probs=87.5

Q ss_pred             eEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCccccHHHHHHHHHhhhcc
Q 003517          625 SVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASK  704 (813)
Q Consensus       625 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~  704 (813)
                      +|+++++|++..+.|+++|.++++.++.++++++++++......  .  .......-...++.++.-++.+++++...  
T Consensus         1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--   74 (146)
T cd01989           1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPS--S--SGKLEVASAYKQEEDKEAKELLLPYRCFC--   74 (146)
T ss_pred             CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCC--C--ccchHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            48999999999999999999999999999999999865321110  0  00000000000111223345666665443  


Q ss_pred             CCCCeEEEEEEec--ChHHHHHHHhccCC--CcEEEEccCCCCCCCCCCccccccCccc-cchhhhhcCCCCCc--ccEE
Q 003517          705 NQESITLEERLVE--SSQEIAGVLKSMNK--CNLFLVGRMAPTAPLMDTKSAEYCSELG-PVGCFLASSEFSTT--ASVV  777 (813)
Q Consensus       705 ~~~~v~y~e~~v~--~~~e~~~~i~~~~~--~DLviVGr~~~~~gl~~w~~~e~~~eLG-~igd~las~d~~~~--~SvL  777 (813)
                      ....+.++..++.  +..++  +++..++  .||+|+|+|+ ..|+..+       -+| -+.+.++..   .+  ++||
T Consensus        75 ~~~~~~~~~~~~~g~~~~~~--I~~~a~~~~~dlIV~Gs~g-~~~l~~~-------~~gssva~~Vi~~---a~~~c~Vl  141 (146)
T cd01989          75 SRKGVQCEDVVLEDDDVAKA--IVEYVADHGITKLVMGASS-DNHFSMK-------FKKSDVASSVLKE---APDFCTVY  141 (146)
T ss_pred             hhcCCeEEEEEEeCCcHHHH--HHHHHHHcCCCEEEEeccC-CCceeec-------ccCCchhHHHHhc---CCCCceEE
Confidence            2234555555554  33443  3444444  8999999998 7777654       366 688999865   55  8999


Q ss_pred             EEee
Q 003517          778 VLQQ  781 (813)
Q Consensus       778 vvqq  781 (813)
                      |||.
T Consensus       142 vv~~  145 (146)
T cd01989         142 VVSK  145 (146)
T ss_pred             EEeC
Confidence            9984

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases

Probab=98.64  E-value=4.3e-07  Score=87.24  Aligned_cols=140  Identities=8%  Similarity=0.172  Sum_probs=87.4

Q ss_pred             eeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHH----HHHHHhhCCCCCCCCCCCcchHHHHHHH
Q 003517          454 RILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIA----MVQKARNNGLPFWDKKRDDRDYIVIAFE  529 (813)
Q Consensus       454 riLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l----~~~~~~~~~~~~~~~~~~~~~~i~~af~  529 (813)
                      +||+|+++.++...+++.+..+...  ....++++|+++.........    ......++.       ....++.++.+.
T Consensus         1 ~ILVavD~S~~s~~al~~a~~~a~~--~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~   71 (146)
T cd01989           1 SVAVAVDKDKKSKNALKWALDNLAT--KGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEE-------DKEAKELLLPYR   71 (146)
T ss_pred             CEEEEecCccccHHHHHHHHHhccC--CCCcEEEEEeccCcccCCCCccchHHHHHHHHHH-------HHHHHHHHHHHH
Confidence            4899999999999999888877543  567899999987532211000    000000000       012233333332


Q ss_pred             HhhhcCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCC--CceEEEe
Q 003517          530 AYQQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAP--CSVGIFV  607 (813)
Q Consensus       530 ~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~ap--CsVgIlv  607 (813)
                      ...+..++.++......  .+..+.|++.|++.++|+|+||-|++......+.++     .+-++|+++||  |||.| |
T Consensus        72 ~~~~~~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gs-----sva~~Vi~~a~~~c~Vlv-v  143 (146)
T cd01989          72 CFCSRKGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKS-----DVASSVLKEAPDFCTVYV-V  143 (146)
T ss_pred             HHHhhcCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCC-----chhHHHHhcCCCCceEEE-E
Confidence            22222445655544332  478999999999999999999999887655443321     24669999999  99955 4


Q ss_pred             cCC
Q 003517          608 DRG  610 (813)
Q Consensus       608 drg  610 (813)
                      .+|
T Consensus       144 ~~~  146 (146)
T cd01989         144 SKG  146 (146)
T ss_pred             eCc
Confidence            443

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.

>PRK15456 universal stress protein UspG; Provisional

Probab=98.55  E-value=3.8e-07  Score=87.38  Aligned_cols=134  Identities=9%  Similarity=0.089  Sum_probs=82.1

Q ss_pred             ceeEEEeecCC--ChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHH
Q 003517          453 FRILACFHSTR--NIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEA  530 (813)
Q Consensus       453 lriLv~v~~~~--~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~  530 (813)
                      .|||+|+++.+  +...+++.+..++..  . ..++++|+++-..... .   .........+ .  ....++..+.++.
T Consensus         3 ~~ILv~vD~S~~~~s~~al~~A~~la~~--~-~~l~llhv~~~~~~~~-~---~~~~~~~~~~-~--~~~~~~~~~~l~~   72 (142)
T PRK15456          3 KTIIMPVDVFEMELSDKAVRHAEFLAQD--D-GVIHLLHVLPGSASLS-L---HRFAADVRRF-E--EHLQHEAEERLQT   72 (142)
T ss_pred             ccEEEeccCCchhHHHHHHHHHHHHHhc--C-CeEEEEEEecCccccc-c---cccccchhhH-H--HHHHHHHHHHHHH
Confidence            37999999984  778888877777532  3 3799999987432110 0   0000000000 0  0111222222333


Q ss_pred             hhh---cCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCCceEEE
Q 003517          531 YQQ---LSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIF  606 (813)
Q Consensus       531 ~~~---~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgIl  606 (813)
                      +.+   ..++.++..+..   .+..++|++.|+++++||||||.|++. ....+.|+.      -++|++++||||.|.
T Consensus        73 ~~~~~~~~~~~v~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~llGS~------a~~v~~~a~~pVLvV  141 (142)
T PRK15456         73 MVSHFTIDPSRIKQHVRF---GSVRDEVNELAEELGADVVVIGSRNPS-ISTHLLGSN------ASSVIRHANLPVLVV  141 (142)
T ss_pred             HHHHhCCCCcceEEEEcC---CChHHHHHHHHhhcCCCEEEEcCCCCC-ccceecCcc------HHHHHHcCCCCEEEe
Confidence            322   234666655544   477899999999999999999999864 444444444      569999999999764

>PRK15005 universal stress protein F; Provisional

Probab=98.51  E-value=2.8e-07  Score=88.32  Aligned_cols=135  Identities=17%  Similarity=0.186  Sum_probs=79.4

Q ss_pred             eeEEEeecCCC--hhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHHh
Q 003517          454 RILACFHSTRN--IPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAY  531 (813)
Q Consensus       454 riLv~v~~~~~--v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~~  531 (813)
                      +||+|+++.++  ...+++.+..++.  ..+..++++|+++............   ....+...   ...++..+.++++
T Consensus         4 ~ILv~~D~s~~~~~~~a~~~a~~la~--~~~~~l~ll~v~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~l~~~   75 (144)
T PRK15005          4 TILVPIDISDSELTQRVISHVEAEAK--IDDAEVHFLTVIPSLPYYASLGLAY---SAELPAMD---DLKAEAKSQLEEI   75 (144)
T ss_pred             cEEEecCCCchhHHHHHHHHHHHHHh--ccCCeEEEEEEEccCcccccccccc---cccchHHH---HHHHHHHHHHHHH
Confidence            69999999987  3566766666553  3567899999997532211100000   00000000   1111222223333


Q ss_pred             hh---cCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCCceEEE
Q 003517          532 QQ---LSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIF  606 (813)
Q Consensus       532 ~~---~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgIl  606 (813)
                      .+   ..+++++..+..   .+-.+.|++.|+++++|+|+||.|+ ....+.+.|+      +..+|++++||||.|.
T Consensus        76 ~~~~~~~~~~~~~~v~~---G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~~llGS------~a~~vl~~a~cpVlvV  143 (144)
T PRK15005         76 IKKFKLPTDRVHVHVEE---GSPKDRILELAKKIPADMIIIASHR-PDITTYLLGS------NAAAVVRHAECSVLVV  143 (144)
T ss_pred             HHHhCCCCCceEEEEeC---CCHHHHHHHHHHHcCCCEEEEeCCC-CCchheeecc------hHHHHHHhCCCCEEEe
Confidence            22   133455544433   4678999999999999999999884 3444444444      3569999999999764

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents

Probab=98.50  E-value=4.5e-07  Score=85.12  Aligned_cols=133  Identities=17%  Similarity=0.233  Sum_probs=86.7

Q ss_pred             ceeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHH---
Q 003517          453 FRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFE---  529 (813)
Q Consensus       453 lriLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~---  529 (813)
                      -|||+|+++.++...+++.+..+...  ....++++|+++.................          ..++......   
T Consensus         3 ~~Ilv~~d~~~~~~~al~~a~~la~~--~~~~i~~l~v~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~   70 (140)
T PF00582_consen    3 KRILVAIDGSEESRRALRFALELAKR--SGAEITLLHVIPPPPQYSFSAAEDEESEE----------EAEEEEQARQAEA   70 (140)
T ss_dssp             SEEEEEESSSHHHHHHHHHHHHHHHH--HTCEEEEEEEEESCHCHHHHHHHHHHHHH----------HHHHHHHHHHHHH
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHh--hCCeEEEEEeecccccccccccccccccc----------ccchhhhhhhHHH
Confidence            37999999999999998888777643  67889999999977655443211111000          0011110000   


Q ss_pred             Hh-hhcCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCCceEEE
Q 003517          530 AY-QQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIF  606 (813)
Q Consensus       530 ~~-~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgIl  606 (813)
                      .. ............. +  .+..+.|++.+++.++|+||+|.|++....+.+      +..+.+++++++||||.|+
T Consensus        71 ~~~~~~~~~~~~~~~~-~--~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~------~gs~~~~l~~~~~~pVlvv  139 (140)
T PF00582_consen   71 EEAEAEGGIVIEVVIE-S--GDVADAIIEFAEEHNADLIVMGSRGRSGLERLL------FGSVAEKLLRHAPCPVLVV  139 (140)
T ss_dssp             HHHHHHTTSEEEEEEE-E--SSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSS------SHHHHHHHHHHTSSEEEEE
T ss_pred             HHHhhhccceeEEEEE-e--eccchhhhhccccccceeEEEeccCCCCccCCC------cCCHHHHHHHcCCCCEEEe
Confidence            11 1112233322222 2  588999999999999999999999866555443      4556789999999999765

UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family

Probab=98.49  E-value=5.8e-07  Score=83.74  Aligned_cols=122  Identities=18%  Similarity=0.162  Sum_probs=85.2

Q ss_pred             eeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHHhhh
Q 003517          454 RILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQ  533 (813)
Q Consensus       454 riLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~  533 (813)
                      |||+|+++.+....+++.+..++..  .+..++++|+++-...  .              ..   ...++.++.+++..+
T Consensus         1 ~Ilv~vd~s~~s~~al~~a~~la~~--~~~~l~ll~v~~~~~~--~--------------~~---~~~~~~l~~~~~~~~   59 (124)
T cd01987           1 RILVCISGGPNAERLIRRAARLADR--LKAPWYVVYVETPRLN--R--------------LS---EAERRRLAEALRLAE   59 (124)
T ss_pred             CEEEEECCCcchHHHHHHHHHHHHH--hCCCEEEEEEecCccc--c--------------CC---HHHHHHHHHHHHHHH
Confidence            6999999999999999998887644  5778999999863211  0              00   122344444444443


Q ss_pred             cCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccC-CCceEEE
Q 003517          534 LSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHA-PCSVGIF  606 (813)
Q Consensus       534 ~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~a-pCsVgIl  606 (813)
                      ..++..  .+..+  .+..+.|++.|++.++|+|+||+|++......+-+      ++.++|+++| ||+|.|.
T Consensus        60 ~~~~~~--~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~G------s~~~~v~~~a~~~~v~v~  123 (124)
T cd01987          60 ELGAEV--VTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRG------SLVDRLLRRAGNIDVHIV  123 (124)
T ss_pred             HcCCEE--EEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcc------cHHHHHHHhCCCCeEEEe
Confidence            333333  23333  56889999999999999999999988766544433      3467999999 9998764

The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea

Probab=98.45  E-value=1.4e-06  Score=81.78  Aligned_cols=130  Identities=13%  Similarity=0.131  Sum_probs=81.7

Q ss_pred             eEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCccccHHHHHHHHHhhhcc
Q 003517          625 SVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASK  704 (813)
Q Consensus       625 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~  704 (813)
                      ||+++..|.++++.++++|.+||+.++.+++++|+.+.......  .           ..+.+.+..++.++.++...  
T Consensus         1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~~~--   65 (132)
T cd01988           1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSP--S-----------QLEVNVQRARKLLRQAERIA--   65 (132)
T ss_pred             CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCc--c-----------hhHHHHHHHHHHHHHHHHHh--
Confidence            58999999999999999999999999999999999865321110  0           01111222334555554432  


Q ss_pred             CCCCeEEEEEEe--cChHHHHHHHhccCCCcEEEEccCCCCCCCCCCccccccCccccchhhhhcCCCCCcccEEEEe
Q 003517          705 NQESITLEERLV--ESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQ  780 (813)
Q Consensus       705 ~~~~v~y~e~~v--~~~~e~~~~i~~~~~~DLviVGr~~~~~gl~~w~~~e~~~eLG~igd~las~d~~~~~SvLvvq  780 (813)
                      ....+.....+.  .+..+.+....+-.++||+|+|.++ .+++.+|       -+|...+.+...   ++++||||+
T Consensus        66 ~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~-~~~~~~~-------~lGs~~~~v~~~---~~~pvlvv~  132 (132)
T cd01988          66 ASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHG-STSLRDR-------LFGGVIDQVLES---APCDVAVVK  132 (132)
T ss_pred             hhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCC-CCCccce-------ecCchHHHHHhc---CCCCEEEeC
Confidence            111223333332  2333333222222239999999998 4554443       488888888865   778999985

Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio

>PRK15118 universal stress global response regulator UspA; Provisional

Probab=98.42  E-value=1.2e-06  Score=83.98  Aligned_cols=134  Identities=8%  Similarity=0.003  Sum_probs=80.3

Q ss_pred             ceeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHHhh
Q 003517          453 FRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQ  532 (813)
Q Consensus       453 lriLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~  532 (813)
                      -|||+|+++.++....++.+..++..  ....++++|+.+-........    . ........  ....++..+.++.+.
T Consensus         4 ~~ILvavD~S~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~----~-~~~~~~~~--~~~~~~~~~~l~~~~   74 (144)
T PRK15118          4 KHILIAVDLSPESKVLVEKAVSMARP--YNAKVSLIHVDVNYSDLYTGL----I-DVNLGDMQ--KRISEETHHALTELS   74 (144)
T ss_pred             eEEEEEccCChhHHHHHHHHHHHHHh--hCCEEEEEEEccChhhhhhhh----h-hcchHHHH--HHHHHHHHHHHHHHH
Confidence            37999999999988888877776533  466799999843111100000    0 00000000  011233334444544


Q ss_pred             hcCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCCceEEE
Q 003517          533 QLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIF  606 (813)
Q Consensus       533 ~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgIl  606 (813)
                      +..++.+.....  ...+.++.|++.|++.++||||+|.|+.. . +.       +.++-.+|+++|||||.|.
T Consensus        75 ~~~~~~~~~~~~--~~G~p~~~I~~~a~~~~~DLIV~Gs~~~~-~-~~-------lgSva~~v~~~a~~pVLvv  137 (144)
T PRK15118         75 TNAGYPITETLS--GSGDLGQVLVDAIKKYDMDLVVCGHHQDF-W-SK-------LMSSARQLINTVHVDMLIV  137 (144)
T ss_pred             HhCCCCceEEEE--EecCHHHHHHHHHHHhCCCEEEEeCcccH-H-HH-------HHHHHHHHHhhCCCCEEEe
Confidence            433444322221  22467899999999999999999999531 1 11       2356779999999999775

>PRK09982 universal stress protein UspD; Provisional

Probab=98.40  E-value=6.6e-07  Score=85.80  Aligned_cols=132  Identities=8%  Similarity=0.015  Sum_probs=79.2

Q ss_pred             eeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHHhhh
Q 003517          454 RILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQ  533 (813)
Q Consensus       454 riLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~  533 (813)
                      +||+|+++.++....++-+..++.  +.+..++++|+++......+..  .....+  ...   ....++..+.++.+.+
T Consensus         5 ~ILvavD~S~~s~~al~~A~~lA~--~~~a~l~llhV~~~~~~~~~~~--~~~~~~--~~~---~~~~~~~~~~l~~~~~   75 (142)
T PRK09982          5 HIGVAISGNEEDALLVNKALELAR--HNDAHLTLIHIDDGLSELYPGI--YFPATE--DIL---QLLKNKSDNKLYKLTK   75 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHHH--HhCCeEEEEEEccCcchhchhh--hccchH--HHH---HHHHHHHHHHHHHHHH
Confidence            699999999999988887777763  3677899999987432111000  000000  000   0111112222333322


Q ss_pred             c-CceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCCceEEE
Q 003517          534 L-SSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIF  606 (813)
Q Consensus       534 ~-~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgIl  606 (813)
                      . ....++..+..   .+..+.||+.|++.++|+|+||-| +......       + .+-++|+++|+|||.|.
T Consensus        76 ~~~~~~~~~~v~~---G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~~~-------~-~va~~V~~~s~~pVLvv  137 (142)
T PRK09982         76 NIQWPKTKLRIER---GEMPETLLEIMQKEQCDLLVCGHH-HSFINRL-------M-PAYRGMINKMSADLLIV  137 (142)
T ss_pred             hcCCCcceEEEEe---cCHHHHHHHHHHHcCCCEEEEeCC-hhHHHHH-------H-HHHHHHHhcCCCCEEEe
Confidence            2 22233333333   478999999999999999999965 3222211       2 26779999999999775

>PRK15005 universal stress protein F; Provisional

Probab=98.34  E-value=4.9e-06  Score=79.64  Aligned_cols=138  Identities=11%  Similarity=0.122  Sum_probs=83.0

Q ss_pred             eeEEEecCCCcCh--HHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCccccHHHHHHHHHhh
Q 003517          624 YSVVVPFFGGLDD--CEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSI  701 (813)
Q Consensus       624 ~~i~v~f~GG~dd--reAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~  701 (813)
                      ++|+++.+|++++  +.|+++|.++|+..+.++++++++++..........    ......+.+..++.-++.++++.++
T Consensus         3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~   78 (144)
T PRK15005          3 RTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLA----YSAELPAMDDLKAEAKSQLEEIIKK   78 (144)
T ss_pred             ccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCccccccccc----ccccchHHHHHHHHHHHHHHHHHHH
Confidence            5899999999984  799999999999999999999999642211000000    0000000001112222455555554


Q ss_pred             hccCCCCeEEEEEEecChHHHHHHHhccC--CCcEEEEccCCCCCCCCCCccccccCccccchhhhhcCCCCCcccEEEE
Q 003517          702 ASKNQESITLEERLVESSQEIAGVLKSMN--KCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVL  779 (813)
Q Consensus       702 ~~~~~~~v~y~e~~v~~~~e~~~~i~~~~--~~DLviVGr~~~~~gl~~w~~~e~~~eLG~igd~las~d~~~~~SvLvv  779 (813)
                      .  ....+.++.. +..|.....+++..+  ++||+|+|+++  .|+.+|       =+|-..+-+...   ++++||||
T Consensus        79 ~--~~~~~~~~~~-v~~G~p~~~I~~~a~~~~~DLIV~Gs~~--~~~~~~-------llGS~a~~vl~~---a~cpVlvV  143 (144)
T PRK15005         79 F--KLPTDRVHVH-VEEGSPKDRILELAKKIPADMIIIASHR--PDITTY-------LLGSNAAAVVRH---AECSVLVV  143 (144)
T ss_pred             h--CCCCCceEEE-EeCCCHHHHHHHHHHHcCCCEEEEeCCC--CCchhe-------eecchHHHHHHh---CCCCEEEe
Confidence            3  2222333333 333333333444443  39999999876  566655       378888998876   78899998


Q ss_pred             e
Q 003517          780 Q  780 (813)
Q Consensus       780 q  780 (813)
                      .
T Consensus       144 r  144 (144)
T PRK15005        144 R  144 (144)
T ss_pred             C
Confidence            4

>PRK09982 universal stress protein UspD; Provisional

Probab=98.33  E-value=1.4e-06  Score=83.47  Aligned_cols=135  Identities=10%  Similarity=0.064  Sum_probs=80.4

Q ss_pred             ceeEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccC-CCCccccHHHHHHHHHhh
Q 003517          623 SYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLR-GDNDQVGDDAIISDFKSI  701 (813)
Q Consensus       623 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~l~~~~~~  701 (813)
                      .++|+++.+|+++.+.|+++|.++|+.+++++++++++++......  .    .......+ .+..++.-++.+++.+.+
T Consensus         3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~l~~~~~~   76 (142)
T PRK09982          3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYP--G----IYFPATEDILQLLKNKSDNKLYKLTKN   76 (142)
T ss_pred             ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhch--h----hhccchHHHHHHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999999999999999999854221100  0    00000000 001112222445555544


Q ss_pred             hccCCCCeEEEEEEecChHHHHHHHhccCCCcEEEEccCCCCCCCCCCccccccCccccchhhhhcCCCCCcccEEEEe
Q 003517          702 ASKNQESITLEERLVESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQ  780 (813)
Q Consensus       702 ~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~~DLviVGr~~~~~gl~~w~~~e~~~eLG~igd~las~d~~~~~SvLvvq  780 (813)
                      .  ....+.+ .....+..+++....+-.++||+|+|+|+  +|+.+|        +| +.+-....   ++++||||.
T Consensus        77 ~--~~~~~~~-~v~~G~p~~~I~~~A~~~~aDLIVmG~~~--~~~~~~--------~~-va~~V~~~---s~~pVLvv~  138 (142)
T PRK09982         77 I--QWPKTKL-RIERGEMPETLLEIMQKEQCDLLVCGHHH--SFINRL--------MP-AYRGMINK---MSADLLIVP  138 (142)
T ss_pred             c--CCCcceE-EEEecCHHHHHHHHHHHcCCCEEEEeCCh--hHHHHH--------HH-HHHHHHhc---CCCCEEEec
Confidence            3  1122221 22234455544433333349999999754  777776        45 55555544   789999985

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents

Probab=98.30  E-value=2.1e-06  Score=80.54  Aligned_cols=131  Identities=13%  Similarity=0.187  Sum_probs=87.2

Q ss_pred             eeEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCccccHHHHHHHHH----
Q 003517          624 YSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFK----  699 (813)
Q Consensus       624 ~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~----  699 (813)
                      +||++++.|+++++.|+++|.++|++++.+++++++.+.......              ........+........    
T Consensus         3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~   68 (140)
T PF00582_consen    3 KRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSF--------------SAAEDEESEEEAEEEEQARQA   68 (140)
T ss_dssp             SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHH--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeecccccccc--------------ccccccccccccchhhhhhhH
Confidence            689999999999999999999999999999999999975432210              00000000000000000    


Q ss_pred             ---hhhccCCCCeEEEEEEecChHHHHHHHhccCCCcEEEEccCCCCCCCCCCccccccCccccchhhhhcCCCCCcccE
Q 003517          700 ---SIASKNQESITLEERLVESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASV  776 (813)
Q Consensus       700 ---~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~~DLviVGr~~~~~gl~~w~~~e~~~eLG~igd~las~d~~~~~Sv  776 (813)
                         ... .......+......+..+.+....+..++||+|+|+++ ..++.+|       -+|.+.+-++..   ++++|
T Consensus        69 ~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~-~~~~~~~-------~~gs~~~~l~~~---~~~pV  136 (140)
T PF00582_consen   69 EAEEAE-AEGGIVIEVVIESGDVADAIIEFAEEHNADLIVMGSRG-RSGLERL-------LFGSVAEKLLRH---APCPV  136 (140)
T ss_dssp             HHHHHH-HHTTSEEEEEEEESSHHHHHHHHHHHTTCSEEEEESSS-TTSTTTS-------SSHHHHHHHHHH---TSSEE
T ss_pred             HHHHHh-hhccceeEEEEEeeccchhhhhccccccceeEEEeccC-CCCccCC-------CcCCHHHHHHHc---CCCCE
Confidence               000 12234555666667776666555554559999999998 6666665       388899999975   77899


Q ss_pred             EEEe
Q 003517          777 VVLQ  780 (813)
Q Consensus       777 Lvvq  780 (813)
                      |||.
T Consensus       137 lvv~  140 (140)
T PF00582_consen  137 LVVP  140 (140)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            9983

UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....

>cd00293 USP_Like Usp: Universal stress protein family

Probab=98.29  E-value=6.7e-06  Score=76.18  Aligned_cols=129  Identities=20%  Similarity=0.216  Sum_probs=86.2

Q ss_pred             eeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHHhhh
Q 003517          454 RILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQ  533 (813)
Q Consensus       454 riLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~  533 (813)
                      +||+|+++++....+++.+..+...  .+..++++|+.+-.+........+..            ...++.++.+.....
T Consensus         1 ~ilv~i~~~~~~~~~l~~a~~~a~~--~~~~i~~l~v~~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~~   66 (130)
T cd00293           1 RILVAVDGSEESERALRWAARLARR--LGAELVLLHVVDPPPSSAAELAELLE------------EEARALLEALREALA   66 (130)
T ss_pred             CEEEEeCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCCCCcchhHHHHHH------------HHHHHHHHHHHHHHh
Confidence            5899999999999999998888754  57889999998755433221000000            112333333333322


Q ss_pred             cCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCCceEE
Q 003517          534 LSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGI  605 (813)
Q Consensus       534 ~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgI  605 (813)
                      ..+++++......   +..++|++.+++.++|++++|++++....+.+.+      ..-+++++++||+|.+
T Consensus        67 ~~~~~~~~~~~~~---~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~------~~~~~ll~~~~~pvli  129 (130)
T cd00293          67 EAGVKVETVVLEG---DPAEAILEAAEELGADLIVMGSRGRSGLRRLLLG------SVAERVLRHAPCPVLV  129 (130)
T ss_pred             cCCCceEEEEecC---CCHHHHHHHHHHcCCCEEEEcCCCCCccceeeec------cHHHHHHhCCCCCEEe
Confidence            3456666554443   2389999999999999999999987654433333      3366999999999865

The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family

Probab=98.20  E-value=8.4e-06  Score=75.88  Aligned_cols=123  Identities=12%  Similarity=0.090  Sum_probs=79.8

Q ss_pred             eEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCccccHHHHHHHHHhhhcc
Q 003517          625 SVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASK  704 (813)
Q Consensus       625 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~  704 (813)
                      ||++++.|++.+++|+++|.++|++.+.+++++++.++....                    ..+..++.++++++.. .
T Consensus         1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~--------------------~~~~~~~~l~~~~~~~-~   59 (124)
T cd01987           1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNR--------------------LSEAERRRLAEALRLA-E   59 (124)
T ss_pred             CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCcccc--------------------CCHHHHHHHHHHHHHH-H
Confidence            589999999999999999999999999999999998643211                    0111234455555443 1


Q ss_pred             CCCCeEEEEEEecChHHHHHHHhccCCCcEEEEccCCCCCCCCCCccccccCccccchhhhhcCCCCCcccEEEE
Q 003517          705 NQESITLEERLVESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVL  779 (813)
Q Consensus       705 ~~~~v~y~e~~v~~~~e~~~~i~~~~~~DLviVGr~~~~~gl~~w~~~e~~~eLG~igd~las~d~~~~~SvLvv  779 (813)
                      . -.+.+....-.+..+.+....+-.++|++|+|.++ .+++.++       -+|-..+-++..-  .+.+|||+
T Consensus        60 ~-~~~~~~~~~~~~~~~~I~~~~~~~~~dllviG~~~-~~~~~~~-------~~Gs~~~~v~~~a--~~~~v~v~  123 (124)
T cd01987          60 E-LGAEVVTLPGDDVAEAIVEFAREHNVTQIVVGKSR-RSRWREL-------FRGSLVDRLLRRA--GNIDVHIV  123 (124)
T ss_pred             H-cCCEEEEEeCCcHHHHHHHHHHHcCCCEEEeCCCC-CchHHHH-------hcccHHHHHHHhC--CCCeEEEe
Confidence            1 12333322223333333222222338999999998 5566554       4788888888652  37789886

The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.

>PRK10116 universal stress protein UspC; Provisional

Probab=98.19  E-value=8.1e-06  Score=77.94  Aligned_cols=134  Identities=14%  Similarity=0.085  Sum_probs=83.0

Q ss_pred             ceeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHHhh
Q 003517          453 FRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQ  532 (813)
Q Consensus       453 lriLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~  532 (813)
                      -+||++++..++...++..+..++..  ....++++|+++.........  ....+ ..   .  ....++..+.++.+.
T Consensus         4 ~~ILv~~D~s~~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~~~~--~~~~~-~~---~--~~~~~~~~~~l~~~~   73 (142)
T PRK10116          4 SNILVAVAVTPESQQLLAKAVSIARP--VNGKISLITLASDPEMYNQFA--APMLE-DL---R--SVMQEETQSFLDKLI   73 (142)
T ss_pred             ceEEEEccCCcchHHHHHHHHHHHHH--hCCEEEEEEEccCcccchhhh--HHHHH-HH---H--HHHHHHHHHHHHHHH
Confidence            47999999999988888887777643  456789999986432111110  00000 00   0  011223333444444


Q ss_pred             hcCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCCceEEE
Q 003517          533 QLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIF  606 (813)
Q Consensus       533 ~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgIl  606 (813)
                      ...+++....  +....+..+.|++.|++.++||||+|-|++......       + .+-.+|++++||||.|+
T Consensus        74 ~~~~~~~~~~--~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~-------~-s~a~~v~~~~~~pVLvv  137 (142)
T PRK10116         74 QDADYPIEKT--FIAYGELSEHILEVCRKHHFDLVICGNHNHSFFSRA-------S-CSAKRVIASSEVDVLLV  137 (142)
T ss_pred             HhcCCCeEEE--EEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHH-------H-HHHHHHHhcCCCCEEEE
Confidence            4334433211  114467889999999999999999999977543321       1 34569999999999776

>PRK10116 universal stress protein UspC; Provisional

Probab=98.18  E-value=2.8e-06  Score=81.17  Aligned_cols=131  Identities=11%  Similarity=0.128  Sum_probs=78.7

Q ss_pred             ceeEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCcc---ccHHHHHHHHH
Q 003517          623 SYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQ---VGDDAIISDFK  699 (813)
Q Consensus       623 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~l~~~~  699 (813)
                      .++|+++.++.++.+.||++|.++|+..+++++++++.++.....   .     ..... ..+.++   +.-++.++++.
T Consensus         3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~---~-----~~~~~-~~~~~~~~~~~~~~~l~~~~   73 (142)
T PRK10116          3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYN---Q-----FAAPM-LEDLRSVMQEETQSFLDKLI   73 (142)
T ss_pred             CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccch---h-----hhHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999999999999999999975421110   0     00000 000011   11123344443


Q ss_pred             hhhccCCCCeEEEEEEecChHHHHHHHhccCC--CcEEEEccCCCCCCCCCCccccccCccccchhhhhcCCCCCcccEE
Q 003517          700 SIASKNQESITLEERLVESSQEIAGVLKSMNK--CNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVV  777 (813)
Q Consensus       700 ~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~--~DLviVGr~~~~~gl~~w~~~e~~~eLG~igd~las~d~~~~~SvL  777 (813)
                      .+.     .+......+..|.....+++..++  +||+|+|+++ .++++.|         +...+-++..   ++++||
T Consensus        74 ~~~-----~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~-~~~~~~~---------~s~a~~v~~~---~~~pVL  135 (142)
T PRK10116         74 QDA-----DYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHN-HSFFSRA---------SCSAKRVIAS---SEVDVL  135 (142)
T ss_pred             Hhc-----CCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCc-chHHHHH---------HHHHHHHHhc---CCCCEE
Confidence            332     222233334444444445555543  9999999998 4554433         2345666654   788999


Q ss_pred             EEe
Q 003517          778 VLQ  780 (813)
Q Consensus       778 vvq  780 (813)
                      ||-
T Consensus       136 vv~  138 (142)
T PRK10116        136 LVP  138 (142)
T ss_pred             EEe
Confidence            995

>PRK11175 universal stress protein UspE; Provisional

Probab=98.13  E-value=5.8e-06  Score=89.84  Aligned_cols=144  Identities=14%  Similarity=0.089  Sum_probs=85.4

Q ss_pred             ceeEEEeecCCCh-------hhHHHHHHhhccCCCC-CceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHH
Q 003517          453 FRILACFHSTRNI-------PSLINLVESSRGRKRG-KLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYI  524 (813)
Q Consensus       453 lriLv~v~~~~~v-------~~li~Ll~~~~~~~~s-~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i  524 (813)
                      -+||+|++..+..       ..+++.+..++..  . ...++++|+.+........    ...........  ....++.
T Consensus       153 ~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~--~~~a~l~ll~v~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~  224 (305)
T PRK11175        153 GKILVAVNVASEEPYHDALNEKLVEEAIDLAEQ--LNHAEVHLVNAYPVTPINIAI----ELPEFDPSVYN--DAIRGQH  224 (305)
T ss_pred             CeEEEEeCCCCCccchhHHHHHHHHHHHHHHhh--CcCCceEEEEEecCcchhccc----cccccchhhHH--HHHHHHH
Confidence            4899999987643       3466666665532  3 5679999998744321100    00000000000  0111223


Q ss_pred             HHHHHHhhhcCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCCceE
Q 003517          525 VIAFEAYQQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVG  604 (813)
Q Consensus       525 ~~af~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVg  604 (813)
                      .+.++.+.+..+++........  .+..+.|++.|+++++|+|+||.|++....+.+-|+.      .++|++++||||.
T Consensus       225 ~~~l~~~~~~~~~~~~~~~v~~--G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~------a~~v~~~~~~pVL  296 (305)
T PRK11175        225 LLAMKALRQKFGIDEEQTHVEE--GLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGNT------AEHVIDHLNCDLL  296 (305)
T ss_pred             HHHHHHHHHHhCCChhheeecc--CCHHHHHHHHHHHhCCCEEEECCCccCCCcceeecch------HHHHHhcCCCCEE
Confidence            3344444433233321111122  4678999999999999999999998887776665544      6699999999998


Q ss_pred             EEecCCCC
Q 003517          605 IFVDRGLG  612 (813)
Q Consensus       605 Ilvdrg~~  612 (813)
                      ++..+|+.
T Consensus       297 vv~~~~~~  304 (305)
T PRK11175        297 AIKPDGYV  304 (305)
T ss_pred             EEcCCCCC
Confidence            87666653

>PRK15456 universal stress protein UspG; Provisional

Probab=98.10  E-value=1.7e-05  Score=75.78  Aligned_cols=136  Identities=10%  Similarity=0.080  Sum_probs=80.9

Q ss_pred             ceeEEEecCCCc--ChHHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccC-CCCccccHHHHHHHHH
Q 003517          623 SYSVVVPFFGGL--DDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLR-GDNDQVGDDAIISDFK  699 (813)
Q Consensus       623 ~~~i~v~f~GG~--ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~l~~~~  699 (813)
                      .+||+++.+|++  .++.|+++|.++|+.. .+++++++.++........      ......+ .+..++.-++.++++.
T Consensus         2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~   74 (142)
T PRK15456          2 YKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHR------FAADVRRFEEHLQHEAEERLQTMV   74 (142)
T ss_pred             CccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccc------cccchhhHHHHHHHHHHHHHHHHH
Confidence            368999999984  7999999999999875 5899999986532110000      0000000 0011122334555555


Q ss_pred             hhhccCCCCeEEEEEEecChHHHHHHHhccC--CCcEEEEccCCCCCCCCCCccccccCccccchhhhhcCCCCCcccEE
Q 003517          700 SIASKNQESITLEERLVESSQEIAGVLKSMN--KCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVV  777 (813)
Q Consensus       700 ~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~--~~DLviVGr~~~~~gl~~w~~~e~~~eLG~igd~las~d~~~~~SvL  777 (813)
                      ++.  ..+...++. .+..|.....+++..+  +.||+|+|+|+ . |+.++       =+|-..+-++..   ++++||
T Consensus        75 ~~~--~~~~~~v~~-~v~~G~~~~~I~~~a~~~~~DLIVmG~~g-~-~~~~~-------llGS~a~~v~~~---a~~pVL  139 (142)
T PRK15456         75 SHF--TIDPSRIKQ-HVRFGSVRDEVNELAEELGADVVVIGSRN-P-SISTH-------LLGSNASSVIRH---ANLPVL  139 (142)
T ss_pred             HHh--CCCCcceEE-EEcCCChHHHHHHHHhhcCCCEEEEcCCC-C-Cccce-------ecCccHHHHHHc---CCCCEE
Confidence            443  222233332 2233322223343333  39999999998 3 56554       389999999976   788999


Q ss_pred             EEe
Q 003517          778 VLQ  780 (813)
Q Consensus       778 vvq  780 (813)
                      ||.
T Consensus       140 vV~  142 (142)
T PRK15456        140 VVR  142 (142)
T ss_pred             EeC
Confidence            984

>PRK15118 universal stress global response regulator UspA; Provisional

Probab=98.03  E-value=1.1e-05  Score=77.30  Aligned_cols=132  Identities=13%  Similarity=0.146  Sum_probs=77.4

Q ss_pred             ceeEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCccccH---HHHHHHHH
Q 003517          623 SYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGD---DAIISDFK  699 (813)
Q Consensus       623 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~l~~~~  699 (813)
                      .+||+++.+|.+.++.||++|..+|+.++++++++++..+..... .+.     .....  .+.+++..   .+.++++.
T Consensus         3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~-~~~-----~~~~~--~~~~~~~~~~~~~~l~~~~   74 (144)
T PRK15118          3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLY-TGL-----IDVNL--GDMQKRISEETHHALTELS   74 (144)
T ss_pred             ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhh-hhh-----hhcch--HHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999853211100 000     00000  01111111   12333333


Q ss_pred             hhhccCCCCeEEEEEEecChHHHHHHHhccCC--CcEEEEccCCCCCCCCCCccccccCccccchhhhhcCCCCCcccEE
Q 003517          700 SIASKNQESITLEERLVESSQEIAGVLKSMNK--CNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVV  777 (813)
Q Consensus       700 ~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~--~DLviVGr~~~~~gl~~w~~~e~~~eLG~igd~las~d~~~~~SvL  777 (813)
                      .+.     .+...+..+..|.....+++..++  +||+|+|+|+  .+   |   +   .+|-..+-+...   ++++||
T Consensus        75 ~~~-----~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~--~~---~---~---~lgSva~~v~~~---a~~pVL  135 (144)
T PRK15118         75 TNA-----GYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ--DF---W---S---KLMSSARQLINT---VHVDML  135 (144)
T ss_pred             HhC-----CCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc--cH---H---H---HHHHHHHHHHhh---CCCCEE
Confidence            221     222333344333333334444433  9999999997  22   2   1   267677777765   788999


Q ss_pred             EEee
Q 003517          778 VLQQ  781 (813)
Q Consensus       778 vvqq  781 (813)
                      ||..
T Consensus       136 vv~~  139 (144)
T PRK15118        136 IVPL  139 (144)
T ss_pred             EecC
Confidence            9985

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=97.97  E-value=0.0019  Score=68.66  Aligned_cols=256  Identities=16%  Similarity=0.141  Sum_probs=140.2

Q ss_pred             HHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHH
Q 003517          105 LLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILA  184 (813)
Q Consensus       105 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~  184 (813)
                      +..++|-.|-++|++...+..||...+-+.-+++..+++.+++.+++..   +. .....+.+-.+++.+--..=..+..
T Consensus        51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~---g~-~Gls~laiiaa~~~~Ng~ly~al~~  126 (312)
T PRK12460         51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAE---GI-FGLSGLAIVAAMSNSNGGLYAALMG  126 (312)
T ss_pred             HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcc---cc-cchHHHHHHHHHhcCcHHHHHHHHH
Confidence            4568899999999999988888888888888888888888777776532   11 1133455556666666666777788


Q ss_pred             HcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchh
Q 003517          185 ELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKE  264 (813)
Q Consensus       185 el~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e  264 (813)
                      |++ -++|.|-..+  ..++|.=-+.++++..                                 .++.+ .|    .. 
T Consensus       127 ~yG-~~~d~gA~~~--~sl~~GPf~tm~aLga---------------------------------~gLA~-ip----~~-  164 (312)
T PRK12460        127 EFG-DERDVGAISI--LSLNDGPFFTMLALGA---------------------------------AGLAN-IP----IM-  164 (312)
T ss_pred             HcC-CHhhhhHHhh--hhhccCcHHHHHHHHH---------------------------------HHHhc-CC----hH-
Confidence            888 4555553322  1122211111111100                                 01111 11    00 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhH
Q 003517          265 LYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSW  344 (813)
Q Consensus       265 ~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~  344 (813)
                      .  +  +                +.+=+++.|+++.|-.   +.+.+.+++= ..+.+|+|-+..|.++|+..+.+.. +
T Consensus       165 ~--l--v----------------~lilpILiGmilGNld---~~~~~~l~~G-i~f~I~f~~f~LG~~lnl~~I~~~G-~  219 (312)
T PRK12460        165 A--L--V----------------AALLPLVLGMILGNLD---PDMRKFLTKG-GPLLIPFFAFALGAGINLSMLLQAG-L  219 (312)
T ss_pred             H--H--H----------------HHHHHHHHHHHHhccc---hhhHHHHhcc-ceEeHHHHHHHhcCCeeHHHHHHhC-h
Confidence            0  0  0                1222455666666522   2233344433 3458999999999999999886521 2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH--HHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHhH
Q 003517          345 GLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALG--FIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFIT  422 (813)
Q Consensus       345 ~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lg--l~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~  422 (813)
                      . .+++.+..++.-+..+++..|++|.+.+-++.+|  ..-+.-|-.  +++......+.. .+.-+..|.++++.|.+.
T Consensus       220 ~-GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpA--AVaAadP~~~~~-~~~Ataqvaa~vivTail  295 (312)
T PRK12460        220 A-GILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPL--AIAAADPSLAPV-AAAATAQVAASVIVTAIL  295 (312)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHH--HHHHhchhHHHH-HHHHHHHHHHHHHHHHHH
Confidence            2 2222233334445566667788899888887777  432222222  222221111111 234455555555556555


Q ss_pred             HHH-HHHhhccccc
Q 003517          423 TPI-LMAIYKPARK  435 (813)
Q Consensus       423 ~pl-v~~l~~~~~~  435 (813)
                      .|+ ..|++|+.++
T Consensus       296 ~P~~t~~~~k~~~~  309 (312)
T PRK12460        296 TPLLTSWVAKKEAK  309 (312)
T ss_pred             HHHHHHHHHHHhcc
Confidence            554 5666665443

>cd00293 USP_Like Usp: Universal stress protein family

Probab=97.97  E-value=3.8e-05  Score=71.07  Aligned_cols=128  Identities=18%  Similarity=0.310  Sum_probs=81.4

Q ss_pred             eEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCccccHHHHHHHHHhhhcc
Q 003517          625 SVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASK  704 (813)
Q Consensus       625 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~  704 (813)
                      +|++++.+++..+.++.+|.+||+..+.+++++++.++......         .    ..+.+....++.+++++...  
T Consensus         1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~---------~----~~~~~~~~~~~~l~~~~~~~--   65 (130)
T cd00293           1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAA---------E----LAELLEEEARALLEALREAL--   65 (130)
T ss_pred             CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcch---------h----HHHHHHHHHHHHHHHHHHHH--
Confidence            58899999999999999999999999999999999865332100         0    01112233446777776653  


Q ss_pred             CCCCeEEEEEEecChHHHHHHHhccCC--CcEEEEccCCCCCCCCCCccccccCccccchhhhhcCCCCCcccEEEE
Q 003517          705 NQESITLEERLVESSQEIAGVLKSMNK--CNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVL  779 (813)
Q Consensus       705 ~~~~v~y~e~~v~~~~e~~~~i~~~~~--~DLviVGr~~~~~gl~~w~~~e~~~eLG~igd~las~d~~~~~SvLvv  779 (813)
                      ....+.+..+...... ...+.+..++  +|++|+|.++ ..++.+|       -.|.+.+.|...   ++.+||+|
T Consensus        66 ~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~dlvvig~~~-~~~~~~~-------~~~~~~~~ll~~---~~~pvliv  130 (130)
T cd00293          66 AEAGVKVETVVLEGDP-AEAILEAAEELGADLIVMGSRG-RSGLRRL-------LLGSVAERVLRH---APCPVLVV  130 (130)
T ss_pred             hcCCCceEEEEecCCC-HHHHHHHHHHcCCCEEEEcCCC-CCcccee-------eeccHHHHHHhC---CCCCEEeC
Confidence            1123333333333222 3333433333  8999999987 4443332       378888888865   66788874

The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=97.90  E-value=0.028  Score=62.66  Aligned_cols=294  Identities=18%  Similarity=0.209  Sum_probs=154.2

Q ss_pred             CCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHH
Q 003517           59 RQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITL  138 (813)
Q Consensus        59 ~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~  138 (813)
                      .+|.++-.++.|+++..  +|.++       ++...+..+.+.+..+-+-+++.=++.|+++++|.++|.+.. +..-.+
T Consensus        24 ~l~~~vl~~~~~~~lsn--lgli~-------~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~-F~~~~~   93 (378)
T PF05684_consen   24 YLPGAVLCYLLGMLLSN--LGLID-------SPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLA-FLIGAV   93 (378)
T ss_pred             hcCHHHHHHHHHHHHHH--CCCcC-------CCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHH-HHHHHH
Confidence            37888888888888885  33331       122346677888888887788888899999999999887643 333344


Q ss_pred             HHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhc------cHHHHHHHHHHcCccCChhHHHHHHHHHH-HHHHHHHH
Q 003517          139 PFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSIT------AFPVLARILAELKLLTTDLGRIAMSAAAV-NDVAAWVL  211 (813)
Q Consensus       139 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~T------s~~vv~~iL~el~l~~s~~g~l~ls~a~i-~D~~~~~l  211 (813)
                      ..++|..+++.+.... .+.    ...-++.+++.|      -+.-+...   ++. +   .. ..++++. |.+..-+.
T Consensus        94 g~viG~~va~~l~~~~-l~~----~~wk~ag~l~gsyiGGs~N~~Av~~a---l~~-~---~~-~~~a~~aaDnv~~~~~  160 (378)
T PF05684_consen   94 GTVIGAVVAFLLFGGF-LGP----EGWKIAGMLAGSYIGGSVNFVAVAEA---LGV-S---DS-LFAAALAADNVVMALW  160 (378)
T ss_pred             HHHHHHHHHHHHHhhc-ccc----hHHHHHHHHHhcccCchhHHHHHHHH---HCC-C---HH-HHHHHHHHHHHHHHHH
Confidence            4455666666554332 011    111222222211      23323332   331 1   12 3334443 44444333


Q ss_pred             HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhhC--CCCCCchhHHHHHHHHHHH
Q 003517          212 LALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRPVLSLM--------------ARRS--PEGEPVKELYVCITLSMVL  275 (813)
Q Consensus       212 l~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i--------------~~~~--~~~~~~~e~~~~~~l~~~l  275 (813)
                      +.+...+....                       +..-+|.              .+..  .++++.. ..+...+++.+
T Consensus       161 ~~~l~~l~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~la~a~  216 (378)
T PF05684_consen  161 FAFLLALPPFA-----------------------RKFDRWTKADTSSIEALEEEIEAEEAEWARKPIS-QDLAFLLAVAF  216 (378)
T ss_pred             HHHHHHHhhhh-----------------------HHhhhccCCCccccchhhhhhhhhhhccccCCcH-hHHHHHHHHHH
Confidence            33333222100                       0000000              0000  0011111 22334444444


Q ss_pred             HHHHHHHHHCh-------------hHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchh
Q 003517          276 AASFVTDTIGI-------------HALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGAT  342 (813)
Q Consensus       276 ~~~~~ae~~g~-------------~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~  342 (813)
                      ....++..++-             -.++-....|++..- +|..+.+ .--+.+ ..+++=+||+.+|++.|+..+.+..
T Consensus       217 ~v~~~s~~la~~l~~~~~~~~~~~~~il~~tt~~l~~~~-~~~~~~l-~g~~~l-g~~lly~ffa~IGa~a~i~~l~~ap  293 (378)
T PF05684_consen  217 AVVALSHALAAWLPPLFAGISSSTWLILTVTTLGLATSF-PPFRKLL-RGASEL-GTFLLYLFFAVIGASADISELLDAP  293 (378)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhc-cchhhcC-CchHHH-HHHHHHHHHHHHccccCHHHHHHhH
Confidence            44444333221             133444556666553 5555554 444555 5677888999999999999887622


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChH
Q 003517          343 SWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQ  406 (813)
Q Consensus       343 ~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~  406 (813)
                      .   ..++.++.+..-.+..++.++++|+|..+-...+-. |.-|-........+++.....+.
T Consensus       294 ~---~~l~~~i~l~iH~~l~l~~~kl~k~~l~~~~vAS~A-nIGGpaTA~a~A~a~~~~Lv~pg  353 (378)
T PF05684_consen  294 S---LFLFGFIILAIHLLLMLILGKLFKIDLFELLVASNA-NIGGPATAPAVAAAKGPSLVPPG  353 (378)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhhc-ccCCcchHHHHHHhcCCccHHHH
Confidence            2   223334445667777888999999999888776663 55665555444445544444333

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi

Probab=97.56  E-value=0.016  Score=61.31  Aligned_cols=89  Identities=17%  Similarity=0.158  Sum_probs=62.9

Q ss_pred             HHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCChhHHHHHHHHHHhhccHHHHHHHH
Q 003517          105 LLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTV-LKGANQAPLLVFMGVSLSITAFPVLARIL  183 (813)
Q Consensus       105 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL  183 (813)
                      +..++|-.|-++|++...+..||...+-+.-+++..+++.++..+++..- ..+.-.....+.+-.+++.+-...=..+.
T Consensus        51 ig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~  130 (314)
T PF03812_consen   51 IGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALM  130 (314)
T ss_pred             HHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHH
Confidence            45688999999999999999999988888888888888888777775321 00100123445566667777777777777


Q ss_pred             HHcCccCChhH
Q 003517          184 AELKLLTTDLG  194 (813)
Q Consensus       184 ~el~l~~s~~g  194 (813)
                      .|++ -+++.|
T Consensus       131 ~~yG-d~~D~g  140 (314)
T PF03812_consen  131 GQYG-DEEDVG  140 (314)
T ss_pred             HHhC-CHHHhH
Confidence            8877 455544

There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane

>TIGR00698 conserved hypothetical integral membrane protein

Probab=97.40  E-value=0.31  Score=53.27  Aligned_cols=85  Identities=18%  Similarity=0.184  Sum_probs=55.1

Q ss_pred             hcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHH
Q 003517           55 LKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALA  134 (813)
Q Consensus        55 ~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~  134 (813)
                      +++.+++..+--|+.|+++|+......+.   ..-| .-...-+.+-++|++    +.|.++++.++.+.+.+.+.+...
T Consensus        26 ~~~~~l~~~~~AillG~~l~n~~~~~~~~---~~~~-Gi~f~~k~lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~~~   97 (335)
T TIGR00698        26 LADPALSALFLAILLGMVAGNTIYPQRDE---EKKR-GVLFAKPFLLRIGIT----LYGFRLTFPYIADVGPNEIVADTL   97 (335)
T ss_pred             hccCCCcHHHHHHHHHHHHhccccccchh---hccc-hHHHHHHHHHHHHHH----HHCccccHHHHHHhhHHHHHHHHH
Confidence            34568999999999999999754211111   0101 001133466677777    469999999999999988877766


Q ss_pred             HHHHHHHHHHHHH
Q 003517          135 GITLPFALGIGTS  147 (813)
Q Consensus       135 ~~~~~~~~~~~~~  147 (813)
                      .+..++.++..++
T Consensus        98 ~v~~~~~~~~~~g  110 (335)
T TIGR00698        98 ILTSTFFLTVFLG  110 (335)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666655544433

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate

Probab=97.38  E-value=0.14  Score=56.96  Aligned_cols=91  Identities=18%  Similarity=0.262  Sum_probs=52.1

Q ss_pred             ChhHHHHHHHHhhhcCCCC------CchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHH
Q 003517          285 GIHALFGAFVVGIIMPKEG------PFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGK  358 (813)
Q Consensus       285 g~~~~lgaf~aGL~l~~~~------~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K  358 (813)
                      .+....++++.|+++.+..      ...++..+++    .++.+-+|.+..=+.+++..+.+ ...++.+++++-.++.=
T Consensus       246 ~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I----~~~sL~~fl~~almsl~l~~l~~-~a~Plliil~~q~i~~~  320 (368)
T PF03616_consen  246 TLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRI----SGISLDLFLAMALMSLKLWVLAD-YALPLLIILAVQTILMV  320 (368)
T ss_pred             CCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHH----HHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            3456789999999987521      1223333333    55566666666667788888876 22333333333333334


Q ss_pred             HHHHHHHHHhcCCChHHHHHHHH
Q 003517          359 IVGTVVVAWSCKVPLRESLALGF  381 (813)
Q Consensus       359 ~~~~~l~~~~~~~~~re~~~lgl  381 (813)
                      +...++..+.+|-++ |+..++.
T Consensus       321 ~f~~fv~fr~~gkdy-daavm~~  342 (368)
T PF03616_consen  321 LFAYFVTFRVMGKDY-DAAVMSA  342 (368)
T ss_pred             HHHHHHhhhhhCCCh-hHHHHhh
Confidence            445566677787776 5555443

The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=97.35  E-value=0.15  Score=54.88  Aligned_cols=146  Identities=18%  Similarity=0.138  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhHHHhcchh---hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHh
Q 003517           96 VLETLANIGLLFFLFLVGLELDIKSILRTGKK---SLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLS  172 (813)
Q Consensus        96 ~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~---~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls  172 (813)
                      .++..-.+++.++||..|+.+..+++++..|+   .+.....++++--+++++++..+.    .     ..-+..|..+-
T Consensus        35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~----l-----~~~l~~Gl~ll  105 (319)
T COG0385          35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP----L-----PPELAVGLLLL  105 (319)
T ss_pred             hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC----C-----CHHHHHhHHhe
Confidence            34445588899999999999999999865443   333334444443344554444442    1     12355555553


Q ss_pred             hccHH----HHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---C-chhHHHHHHHHHHHHHHHHHHH
Q 003517          173 ITAFP----VLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSS---S-SSLIAVWVLLSGAAFVVFAVFV  244 (813)
Q Consensus       173 ~Ts~~----vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~---~-~~~~~~~~~~~~i~~~~~~~~v  244 (813)
                      .+.|.    .+...+.     +.+. -+.++.+.++.+++.++.-+...+..+   . +.....+.++..++.-++++.+
T Consensus       106 ~~~Pggv~S~~~t~lA-----kGnV-alsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~  179 (319)
T COG0385         106 GCCPGGVASNAMTYLA-----KGNV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQL  179 (319)
T ss_pred             eeCCCchhHHHHHHHh-----cCcH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            32222    2333322     2222 456677778888888776655554332   1 3344556666666666677777


Q ss_pred             HHHHHHHHHhhC
Q 003517          245 IRPVLSLMARRS  256 (813)
Q Consensus       245 ~~~~~~~i~~~~  256 (813)
                      +|+......++.
T Consensus       180 ~r~~~~~~~~~~  191 (319)
T COG0385         180 LRPLLPKWVERL  191 (319)
T ss_pred             HHHHHHHHHHHH
Confidence            787766555543

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]

Probab=97.18  E-value=0.099  Score=57.05  Aligned_cols=103  Identities=10%  Similarity=0.162  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHC-----hhHHHHHHHHhhhcCCCCCch--HHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHH
Q 003517          275 LAASFVTDTIG-----IHALFGAFVVGIIMPKEGPFA--GVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLL  347 (813)
Q Consensus       275 l~~~~~ae~~g-----~~~~lgaf~aGL~l~~~~~~~--~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~  347 (813)
                      .+.+++.++++     +....++++.|.++.+..+..  .++.++.-+.+.++-+.+|....=|++.+..+.+- ..++.
T Consensus       232 ~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l-~lpl~  310 (404)
T COG0786         232 AVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADL-ALPLL  310 (404)
T ss_pred             HHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc-cccHH
Confidence            33344666655     467789999999997632211  12334444444678888888888888888888752 33333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 003517          348 LLVILNACFGKIVGTVVVAWSCKVPLRESLA  378 (813)
Q Consensus       348 ~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~  378 (813)
                      +++.+-..+.-+.+.+...+..|-++..+..
T Consensus       311 viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~  341 (404)
T COG0786         311 VILAVQTIVMALFAIFVTFRLMGKNYDAAVL  341 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcchhHHHH
Confidence            3333333344455667777888877776654

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed

Probab=97.18  E-value=0.0029  Score=69.71  Aligned_cols=126  Identities=14%  Similarity=0.209  Sum_probs=76.9

Q ss_pred             cceeEEEecCCCcChHHHHHHHHHHhcCC--CeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCccccHHHHHHHHH
Q 003517          622 VSYSVVVPFFGGLDDCEALAYGMRMAEHP--GIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFK  699 (813)
Q Consensus       622 ~~~~i~v~f~GG~ddreAL~~a~rma~~~--~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~  699 (813)
                      ..+||+++++|++..+.|+++|..+|+.+  +++++++++++......               ..+...+..++.+++.+
T Consensus         4 ~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~---------------~~~~~~~~~eelle~~~   68 (357)
T PRK12652          4 AANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP---------------EGQDELAAAEELLERVE   68 (357)
T ss_pred             ccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc---------------chhHHHHHHHHHHHHHH
Confidence            35799999999999999999999999884  69999999986432111               00111122233444444


Q ss_pred             hhhcc----CCCCeEEEEEEe---------cChHHHHHHHhccCCCcEEEEccCCCCCCCCCCccccccCccccchhhhh
Q 003517          700 SIASK----NQESITLEERLV---------ESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLA  766 (813)
Q Consensus       700 ~~~~~----~~~~v~y~e~~v---------~~~~e~~~~i~~~~~~DLviVGr~~~~~gl~~w~~~e~~~eLG~igd~la  766 (813)
                      +....    ....+.++.+++         .+..|++....+-.++||||+|..- .-|=      - -|-|-+++--|+
T Consensus        69 ~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~-~~~~------~-~~~~~~~~~~~~  140 (357)
T PRK12652         69 VWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEY-NPGG------T-APMLQPLERELA  140 (357)
T ss_pred             HHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCC-CCCC------C-CcccchHHHHHH
Confidence            43200    113566665554         3556655444443349999999986 2221      1 344566666666


Q ss_pred             cCCC
Q 003517          767 SSEF  770 (813)
Q Consensus       767 s~d~  770 (813)
                      ..+.
T Consensus       141 ~~~~  144 (357)
T PRK12652        141 RAGI  144 (357)
T ss_pred             hcCC
Confidence            6554

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=97.12  E-value=0.28  Score=53.06  Aligned_cols=82  Identities=26%  Similarity=0.368  Sum_probs=56.8

Q ss_pred             cccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchH-HHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHH
Q 003517           56 KPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMT-VLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALA  134 (813)
Q Consensus        56 ~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~-~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~  134 (813)
                      ....++..+--|+.|+++|+..++..+.+     . +... .-+.+-++|++    +.|.++++.++.+.+.+.+.+...
T Consensus        22 ~~~~l~~~~~AillG~~i~n~~~~~~~~~-----~-~Gi~~~~k~~Lr~gIV----LlG~~l~~~~i~~~G~~~~~~~~~   91 (305)
T PF03601_consen   22 FLPGLGALLIAILLGMLIGNLFFGLPARF-----K-PGIKFSSKKLLRLGIV----LLGFRLSFSDILALGWKGLLIIII   91 (305)
T ss_pred             cccCccHHHHHHHHHHHHhhhccCCcHHH-----H-hHHHHHHHHHHHHHHH----HHCccccHHHHHHhCccHHHHHHH
Confidence            34678888889999999996334432211     0 1122 23467777777    569999999999999988888777


Q ss_pred             HHHHHHHHHHHHH
Q 003517          135 GITLPFALGIGTS  147 (813)
Q Consensus       135 ~~~~~~~~~~~~~  147 (813)
                      .+.+++.++..++
T Consensus        92 ~v~~~~~~~~~lg  104 (305)
T PF03601_consen   92 VVILTFLLTYWLG  104 (305)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777776665544

; GO: 0016021 integral to membrane

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter

Probab=97.11  E-value=0.035  Score=58.51  Aligned_cols=89  Identities=15%  Similarity=0.187  Sum_probs=57.7

Q ss_pred             HHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCChhHHHHHHHHHHhhccHHHHHHHH
Q 003517          105 LLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTV-LKGANQAPLLVFMGVSLSITAFPVLARIL  183 (813)
Q Consensus       105 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL  183 (813)
                      +..++|-.|-++|++...+..||...+.+.-+++..+++.+++.+++..- ..+.-.....+.+-.+++.|--..=..+.
T Consensus        51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~  130 (314)
T TIGR00793        51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIM  130 (314)
T ss_pred             HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHH
Confidence            45688999999999998888888877777788888888887777775321 00001112334444555555555566666


Q ss_pred             HHcCccCChhH
Q 003517          184 AELKLLTTDLG  194 (813)
Q Consensus       184 ~el~l~~s~~g  194 (813)
                      .|++ -++|.|
T Consensus       131 ~qyG-d~~D~g  140 (314)
T TIGR00793       131 QQYG-TKEEAG  140 (314)
T ss_pred             HHcC-CHhhhh
Confidence            7777 344444

This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]

Probab=97.09  E-value=0.0032  Score=60.20  Aligned_cols=143  Identities=16%  Similarity=0.175  Sum_probs=81.4

Q ss_pred             ceeEEEee-cCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHHh
Q 003517          453 FRILACFH-STRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAY  531 (813)
Q Consensus       453 lriLv~v~-~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~~  531 (813)
                      .+++++++ +.+........+......  ....++++++++-.+........... ..............++..+..+..
T Consensus         6 ~~il~~~d~~s~~~~~a~~~a~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   82 (154)
T COG0589           6 KKILVAVDVGSEAAEKALEEAVALAKR--LGAPLILLVVIDPLEPTALVSVALAD-APIPLSEEELEEEAEELLAEAKAL   82 (154)
T ss_pred             ceEEEEeCCCCHHHHHHHHHHHHHHHh--cCCeEEEEEEeccccccccccccccc-chhhhhHHHHHHHHHHHHHHHHHH
Confidence            47888888 777777666666655433  44556677777644432221100000 000000000012234455555544


Q ss_pred             hhcCceE-EEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCCceEEE
Q 003517          532 QQLSSVT-VRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIF  606 (813)
Q Consensus       532 ~~~~~v~-v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgIl  606 (813)
                      .+...+. +.......  ..-.+.|+..|.+.++|+|++|.+++++.++.+-|      ++-++|++++||||.++
T Consensus        83 ~~~~~~~~~~~~~~~g--~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~llG------svs~~v~~~~~~pVlvv  150 (154)
T COG0589          83 AEAAGVPVVETEVVEG--SPSAEEILELAEEEDADLIVVGSRGRSGLSRLLLG------SVAEKVLRHAPCPVLVV  150 (154)
T ss_pred             HHHcCCCeeEEEEecC--CCcHHHHHHHHHHhCCCEEEECCCCCccccceeee------hhHHHHHhcCCCCEEEE
Confidence            4433333 23333222  22269999999999999999999988777764433      34679999999999765

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

Probab=97.04  E-value=0.38  Score=51.66  Aligned_cols=183  Identities=17%  Similarity=0.183  Sum_probs=90.5

Q ss_pred             hhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHH
Q 003517           62 RVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFA  141 (813)
Q Consensus        62 ~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~  141 (813)
                      -+.-.+++|+.+|-+.-+... ..+    .-+....+.--.+|+.+.|+=.=+++|.+.+++..|+.-.+ ..+..+-++
T Consensus        19 wv~l~i~~Gi~lG~~~p~~~~-~l~----~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L-~lsL~~Nwi   92 (342)
T COG0798          19 WVFLAIAIGILLGVHFPGLAQ-LLG----KLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPL-ILSLFVNWI   92 (342)
T ss_pred             HHHHHHHHHHHHHhcccchhh-hcc----cceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHH-HHHHHHHHH
Confidence            355567888888854433110 000    01123345566788888888888999999999766552222 222222333


Q ss_pred             HHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003517          142 LGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSS  221 (813)
Q Consensus       142 ~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~  221 (813)
                      ++=.+.+.+...+-.+.+    -...|.++-.-++ .++-++-=-++.+.+. ..++....+||++.+++++....+.-+
T Consensus        93 i~P~lm~~la~~fl~~~p----ey~~GlILlglAp-C~aMVivw~~La~Gd~-~~tlv~Va~n~l~qiv~y~~~~~~~l~  166 (342)
T COG0798          93 IGPLLMFALAWFFLPDEP----EYRAGLILLGLAP-CIAMVIVWSGLAKGDR-ELTLVLVAFNSLLQIVLYAPLGKFFLG  166 (342)
T ss_pred             HHHHHHHHHHHHHhCCCH----HHHHHHHHHHhhh-hHHHHHHHHhhccCcH-hhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            222222222211111222    1333333322221 1222111113223322 445556778999999988655443322


Q ss_pred             -CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 003517          222 -SSSLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRS  256 (813)
Q Consensus       222 -~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~  256 (813)
                       .+.....+.++..+...+.+-++.+.+.|++..|.
T Consensus       167 v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~  202 (342)
T COG0798         167 VISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKK  202 (342)
T ss_pred             hccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             22222344555555555555666666677766665

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=96.98  E-value=0.39  Score=52.36  Aligned_cols=111  Identities=19%  Similarity=0.281  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHhhccChhHHHhcchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhc
Q 003517           98 ETLANIGLLFFLFLVGLELDIKSILRTGKKS---LGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSIT  174 (813)
Q Consensus        98 ~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~T  174 (813)
                      |.....++..++|..|+.++.+++++..++.   ...-...+++.-++++++........       ...+..|......
T Consensus        30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~-------~~~l~~Gl~~~~~  102 (313)
T PF13593_consen   30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFL-------PPELALGLLILAC  102 (313)
T ss_pred             hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccC-------CHHHHHHHHHHhh
Confidence            4677888888999999999999998754443   22222333333333444444432111       1124444443322


Q ss_pred             cHHHHH-H-HHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003517          175 AFPVLA-R-ILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIAL  218 (813)
Q Consensus       175 s~~vv~-~-iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~  218 (813)
                      -|+.+. . .++..-  +.+. ..++..+.++.++++++.-+...+
T Consensus       103 lPtTv~S~v~~T~~A--gGN~-a~Al~~~~~snllgv~ltP~ll~l  145 (313)
T PF13593_consen  103 LPTTVSSSVVLTRLA--GGNV-ALALFNAVLSNLLGVFLTPLLLLL  145 (313)
T ss_pred             CCchhhHHHHHHHHc--CCCH-HHHHHHHHHHhhhhHhHHHHHHHH
Confidence            222111 1 122222  2222 455666777888888777655543

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)

Probab=96.86  E-value=0.73  Score=51.73  Aligned_cols=91  Identities=13%  Similarity=0.156  Sum_probs=54.5

Q ss_pred             ChhHHHHHHHHhhhcCCCCCch--HHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHH-HH
Q 003517          285 GIHALFGAFVVGIIMPKEGPFA--GVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKI-VG  361 (813)
Q Consensus       285 g~~~~lgaf~aGL~l~~~~~~~--~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~-~~  361 (813)
                      .+....+|++.|+++.+-.+..  .++.++.-+...++.+-+|.+..=+++++..+.+  .+.-..++++..++.-. ..
T Consensus       244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~--~a~Plliil~~q~i~~~l~~  321 (398)
T TIGR00210       244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELAD--LAGPIALILLVQVMFMALYA  321 (398)
T ss_pred             CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            3677899999999997632211  1122233333466777778788888899988876  33334444444433333 34


Q ss_pred             HHHHHHhcCCChHHHHH
Q 003517          362 TVVVAWSCKVPLRESLA  378 (813)
Q Consensus       362 ~~l~~~~~~~~~re~~~  378 (813)
                      .++.-+..+-+ -|+-.
T Consensus       322 ~fv~fr~mg~~-ydaaV  337 (398)
T TIGR00210       322 IFVTFRLMGKD-YDAAV  337 (398)
T ss_pred             HHHhHHhccch-HHHHH
Confidence            45666667766 66655

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom

Probab=96.83  E-value=0.24  Score=55.13  Aligned_cols=94  Identities=16%  Similarity=0.236  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHhhHHHHHHHhccc-cchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHHHHhhhh
Q 003517          310 IEKIEDMVSGLFLPLYFAASGLK-TNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRES-LALGFIMNTKG  387 (813)
Q Consensus       310 ~~kl~~~~~~~~~plFF~~~G~~-~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~-~~lgl~l~~kG  387 (813)
                      .++...|...-+.+-..+-+|+. +|+..+....++.. +++++...++-.+++++.+++.|+-+-|+ +..|++|+.+|
T Consensus       298 a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~-vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~G  376 (414)
T PF03390_consen  298 AKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQY-VVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMG  376 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCC
Confidence            34455555666666677788888 99988876555553 33444556677888999999999977776 77887887665


Q ss_pred             -HHHHHHHHhhcccCCCC
Q 003517          388 -LVELIVLNIGKDRKVLN  404 (813)
Q Consensus       388 -~v~l~~~~~~~~~~~i~  404 (813)
                       .=+++++..+...++..
T Consensus       377 GtGDvAVLsAa~RM~Lmp  394 (414)
T PF03390_consen  377 GTGDVAVLSAANRMELMP  394 (414)
T ss_pred             CCCcchheehhhhccccc
Confidence             44566666665555443

They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed

Probab=96.73  E-value=0.013  Score=64.62  Aligned_cols=130  Identities=12%  Similarity=0.050  Sum_probs=79.5

Q ss_pred             ceeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHHhh
Q 003517          453 FRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQ  532 (813)
Q Consensus       453 lriLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~  532 (813)
                      .|||+|++++++....++-+-.++.......+++++|+++........   ...           ....+++++..++..
T Consensus         6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~---~~~-----------~~~~eelle~~~~~~   71 (357)
T PRK12652          6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEG---QDE-----------LAAAEELLERVEVWA   71 (357)
T ss_pred             CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccch---hHH-----------HHHHHHHHHHHHHHH
Confidence            479999999999999888777776331125789999999843211110   000           012233444444332


Q ss_pred             hc------CceEEEeeEeec-----cCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCC
Q 003517          533 QL------SSVTVRPMTAIS-----ALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPC  601 (813)
Q Consensus       533 ~~------~~v~v~~~~~vs-----~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apC  601 (813)
                      +.      .+++++..+...     ...+.++.|++.|+++++|+|+|+=.-+..      ++.+..|.+- .=|.++-|
T Consensus        72 ~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~------~~~~~~~~~~-~~~~~~~~  144 (357)
T PRK12652         72 TEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPG------GTAPMLQPLE-RELARAGI  144 (357)
T ss_pred             HHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCC------CCCcccchHH-HHHHhcCC
Confidence            21      467777655442     115889999999999999999999654432      2233455555 34455555


Q ss_pred             ce
Q 003517          602 SV  603 (813)
Q Consensus       602 sV  603 (813)
                      ++
T Consensus       145 ~~  146 (357)
T PRK12652        145 TY  146 (357)
T ss_pred             ce
Confidence            53

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.67  E-value=0.065  Score=64.09  Aligned_cols=117  Identities=11%  Similarity=0.055  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCC-CCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHH
Q 003517          267 VCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPK-EGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWG  345 (813)
Q Consensus       267 ~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~-~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~  345 (813)
                      +.+.++.+.++..++..+|+++++|=.++|+++.. ....-. -.+.++.+ ..+-+.++...+|+++|+..++...  .
T Consensus        10 ~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~-~~~~i~~l-aelGvv~LlF~iGLEl~~~~l~~~~--~   85 (621)
T PRK03562         10 ALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT-DVESILHF-AEFGVVLMLFVIGLELDPQRLWKLR--R   85 (621)
T ss_pred             HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC-CHHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHHH--H
Confidence            34556666777788889999999999999999852 111111 12335555 5666777888899999999886521  1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhh
Q 003517          346 LLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKG  387 (813)
Q Consensus       346 ~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG  387 (813)
                      ....+-...++.-++..+..+.+++.++..++.+|..++.-.
T Consensus        86 ~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SS  127 (621)
T PRK03562         86 SIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSS  127 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            111111111222233344566778999999998888765543

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=96.61  E-value=0.085  Score=56.37  Aligned_cols=141  Identities=13%  Similarity=0.216  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCchH-HHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHH
Q 003517          273 MVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAG-VLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVI  351 (813)
Q Consensus       273 ~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~~-~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii  351 (813)
                      .....+.+++.++++.++|-.++|+++... -++. .-.+.++.+ ..+-+.++....|+++|++.+...  +.....+.
T Consensus         3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~-~lg~i~~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~~~--~~~~~~~~   78 (273)
T TIGR00932         3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPS-GLGLISNVEGVNHL-AEFGVILLMFLIGLELDLERLWKL--RKAAFGVG   78 (273)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHhCcc-cccCCCChHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHH--HHHHHHHH
Confidence            344567788899999999999999998631 1110 111234445 456677788899999999988752  22222222


Q ss_pred             HHHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHH
Q 003517          352 LNACFGK-IVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTT  419 (813)
Q Consensus       352 ~~~~~~K-~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t  419 (813)
                      ...++.- ++.++..+++++.++.+++.+|..+++-..  -++..+..|.+..+.+.-..+.-.++++-
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~--~v~~~il~~~~~~~~~~g~l~l~~~~~~D  145 (273)
T TIGR00932        79 VLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSST--AVVVQVLKERGLLKTPFGQTVLGILLFQD  145 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHH--HHHHHHHHHcCcccChHHHHHHHHHHHHH
Confidence            3333333 344455667789999999999998876642  24455556666666555444433333333

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]

Probab=96.49  E-value=0.043  Score=52.26  Aligned_cols=145  Identities=17%  Similarity=0.197  Sum_probs=87.2

Q ss_pred             ceeEEEecC-CCcChHHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCccccHHHHHHHHHhh
Q 003517          623 SYSVVVPFF-GGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSI  701 (813)
Q Consensus       623 ~~~i~v~f~-GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~  701 (813)
                      .++|++.++ |.+..+.|+..|...+...+..++++.+.+................  .........+..++.+++.+..
T Consensus         5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   82 (154)
T COG0589           5 YKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAP--IPLSEEELEEEAEELLAEAKAL   82 (154)
T ss_pred             cceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccch--hhhhHHHHHHHHHHHHHHHHHH
Confidence            468999999 9999999999999999999999998888754332110000000000  0000011233345666666654


Q ss_pred             hccCCCCeEE-E-EEEecCh-HHHHHHHhccCCCcEEEEccCCCCCCCCCCccccccCccccchhhhhcCCCCCcccEEE
Q 003517          702 ASKNQESITL-E-ERLVESS-QEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVV  778 (813)
Q Consensus       702 ~~~~~~~v~y-~-e~~v~~~-~e~~~~i~~~~~~DLviVGr~~~~~gl~~w~~~e~~~eLG~igd~las~d~~~~~SvLv  778 (813)
                      .  ....+.. . +....++ .+++.......++||+++|.++ .+++.+-       -||-+.+.++..   ++++|||
T Consensus        83 ~--~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g-~~~l~~~-------llGsvs~~v~~~---~~~pVlv  149 (154)
T COG0589          83 A--EAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRG-RSGLSRL-------LLGSVAEKVLRH---APCPVLV  149 (154)
T ss_pred             H--HHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCC-Cccccce-------eeehhHHHHHhc---CCCCEEE
Confidence            3  2222222 2 2223334 3555444443459999999987 4555542       388888888876   7889999


Q ss_pred             Eeec
Q 003517          779 LQQY  782 (813)
Q Consensus       779 vqq~  782 (813)
                      +...
T Consensus       150 v~~~  153 (154)
T COG0589         150 VRSE  153 (154)
T ss_pred             EccC
Confidence            9753

>TIGR00832 acr3 arsenical-resistance protein

Probab=96.46  E-value=0.95  Score=49.68  Aligned_cols=103  Identities=17%  Similarity=0.120  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHhhccChhHHHhcchhhHHH---HHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHH-
Q 003517          102 NIGLLFFLFLVGLELDIKSILRTGKKSLGI---ALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFP-  177 (813)
Q Consensus       102 ~lgl~~llF~~Gle~d~~~l~~~~~~~~~i---a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~-  177 (813)
                      .+++.++||-.|++++++++++..|+...+   -+.++++-=+++++++..+.   +  .+   ..+.+|..+-...|. 
T Consensus        46 ~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~---~--~~---p~l~~GliLv~~~Pgg  117 (328)
T TIGR00832        46 AIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFL---R--DL---FEYIAGLILLGLARCI  117 (328)
T ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHc---C--CC---HHHHHHHHHHHhcchH
Confidence            346668999999999999998765553322   22333322223444444331   1  11   124555554333322 


Q ss_pred             HHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 003517          178 VLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALA  215 (813)
Q Consensus       178 vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~l~  215 (813)
                      +.+.+.+.+-  +.+.. ++++.+.++-+++.++....
T Consensus       118 ~~S~v~T~lA--kGnva-lsv~lt~~stLl~~~~~P~l  152 (328)
T TIGR00832       118 AMVFVWNQLA--KGDPE-YTLVLVAVNSLFQVFLYAPL  152 (328)
T ss_pred             HHHHHHHHHc--CCCHH-HHHHHHHHHHHHHHHHHHHH
Confidence            2333334333  33333 55555667777766665433

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>PRK05274 2-keto-3-deoxygluconate permease; Provisional

Probab=96.42  E-value=0.24  Score=53.95  Aligned_cols=46  Identities=17%  Similarity=0.275  Sum_probs=36.6

Q ss_pred             HHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003517          106 LFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLR  151 (813)
Q Consensus       106 ~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~  151 (813)
                      ..++|-.|-.+|++...+..||...+.+.-+.+..+++.++..++.
T Consensus        54 ~~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~~~g   99 (326)
T PRK05274         54 AVFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGKFIG   99 (326)
T ss_pred             HHHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhhcch
Confidence            3688999999999998888888887777777777777776665554

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.37  E-value=0.14  Score=61.12  Aligned_cols=115  Identities=15%  Similarity=0.119  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCC-CCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHH
Q 003517          267 VCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPK-EGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWG  345 (813)
Q Consensus       267 ~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~-~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~  345 (813)
                      ..+.++.+.++..++..+|+++++|=.++|+++.. ....-+ -.+.++.+ ..+-+.++...+|+++|+..++..... 
T Consensus        10 ~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~-~~~~i~~l-aelGvv~LLF~iGLel~~~~l~~~~~~-   86 (601)
T PRK03659         10 GVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS-DVDEILHF-SELGVVFLMFIIGLELNPSKLWQLRRS-   86 (601)
T ss_pred             HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC-cHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHH-
Confidence            34455566666778888999999999999999853 111111 11335544 466666777888999999988653221 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 003517          346 LLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNT  385 (813)
Q Consensus       346 ~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~  385 (813)
                       ...+....++.-++..+..+.++++++..++.+|..+..
T Consensus        87 -~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~  125 (601)
T PRK03659         87 -IFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAM  125 (601)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence             111111111111222223345578899998888875543

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=96.35  E-value=2.1  Score=46.67  Aligned_cols=300  Identities=17%  Similarity=0.215  Sum_probs=149.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCh--hHH-HHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHh
Q 003517           37 IILQICLVVAFTRFLAFLLKPLRQPR--VIA-EIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVG  113 (813)
Q Consensus        37 ~l~~i~lil~~~~~~~~l~~~l~~P~--ii~-~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~G  113 (813)
                      ...|.++.++++...++++..+++|.  ..| -+++|++.+-...-       .-.|       ..+..+|.+.+=-.+|
T Consensus         7 ~~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~-------l~~P-------~~l~~~~q~ilG~~ig   72 (352)
T COG3180           7 IILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLT-------LPLP-------RGLFKAGQVILGIMIG   72 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccc-------ccCC-------hHHHHHHHHHHHHHHh
Confidence            36788888999999999999988765  556 66777777621110       0111       3455566666666899


Q ss_pred             hccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChh
Q 003517          114 LELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDL  193 (813)
Q Consensus       114 le~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~  193 (813)
                      ..+..+.+... ++-+.+.....+++...+...+|++...-  .++. ..+++ |.  ++-.......+-+|.| .+.+.
T Consensus        73 ~~~t~s~l~~l-~~~w~~~~~v~~~tl~~s~l~g~ll~r~~--~~~~-~Ta~~-gs--~PGgas~m~~iA~d~g-Ad~~~  144 (352)
T COG3180          73 ASLTPSVLDTL-KSNWPIVLVVLLLTLLSSILLGWLLKRFS--ILPG-NTAFL-GS--SPGGASAMVSIAQDYG-ADLRL  144 (352)
T ss_pred             hhcCHHHHHHH-HHcccHHHHHHHHHHHHHHHHHHHHHHhc--CCCc-chhhH-hc--CCchHHHHHHHHHHhC-CChhH
Confidence            99998877543 33344445555566666666777665432  1221 11122 11  1111111222224444 23222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC------CCchhHHH
Q 003517          194 GRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEG------EPVKELYV  267 (813)
Q Consensus       194 g~l~ls~a~i~D~~~~~ll~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~------~~~~e~~~  267 (813)
                      -.+..+.=                                .+.+.....++.+....  .++..++      .+.....+
T Consensus       145 VAl~Q~lR--------------------------------vl~Vvl~vplv~~~~~~--~~a~~~~~~~i~~~~~~~~~~  190 (352)
T COG3180         145 VALMQYLR--------------------------------VLFVVLLAPLVSRLFVG--DGANGSGTPEIWLPPVDWLIL  190 (352)
T ss_pred             HHHHHHHH--------------------------------HHHHHHHHHHHHHHhcC--CCCCCCCCccccCchhhHHHH
Confidence            21111110                                00011111111111110  0111000      01111113


Q ss_pred             HHHHHHHHHHHHHHHHHChh--HHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhh-H
Q 003517          268 CITLSMVLAASFVTDTIGIH--ALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATS-W  344 (813)
Q Consensus       268 ~~~l~~~l~~~~~ae~~g~~--~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~-~  344 (813)
                      .+.+...++.+.+...+++.  ..+|+++.|..+.-......++-+-+.    .+-.-+.=..+|.++|-..+..... .
T Consensus       191 ~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl~----~va~~~iG~~IG~~f~~~~l~~~~r~~  266 (352)
T COG3180         191 LLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWLL----AVAQALIGALIGSRFDRSILREAKRLL  266 (352)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHHH----HHHHHHHHHHHcccccHHHHHHhHhhc
Confidence            44445555555555655553  467777777776643322211211111    1222234467899998666544222 2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcc
Q 003517          345 GLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKD  399 (813)
Q Consensus       345 ~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~  399 (813)
                      ....+.++..++.-...+++..++.+.++.++.. |  .+|-|.-+++....+.+
T Consensus       267 ~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~L-a--~sPGGl~~ma~~A~~l~  318 (352)
T COG3180         267 PAILVSIIALMAIAAGMAGLLSWLTGIDLNTAYL-A--TSPGGLDTMAAIAAALG  318 (352)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-H--cCCCcHHHHHHHHHHcC
Confidence            2233334444555566677788888999887753 2  58888877766655554

>COG3493 CitS Na+/citrate symporter [Energy production and conversion]

Probab=96.30  E-value=0.25  Score=53.39  Aligned_cols=84  Identities=23%  Similarity=0.402  Sum_probs=54.6

Q ss_pred             HhhHHHHHHHhccc-cchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHHHHhhhh-HHHHHHHH
Q 003517          319 GLFLPLYFAASGLK-TNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRES-LALGFIMNTKG-LVELIVLN  395 (813)
Q Consensus       319 ~~~~plFF~~~G~~-~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~-~~lgl~l~~kG-~v~l~~~~  395 (813)
                      .+.-|+. +.+|.. +|+..+.+..+|..++ +.+...++-..+.++.+|+.|+-+-|+ +..|++|+.+| .-+++++.
T Consensus       327 ~~t~~Lm-~giGv~ytdl~ev~~alt~~~vi-i~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDvaVLs  404 (438)
T COG3493         327 NLTWPLM-AGIGVAYTDLNEVAAALTWQNVI-IALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVAVLS  404 (438)
T ss_pred             hhHHHHH-HhhhhccccHHHHHHHhchhHHH-HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchHHhh
Confidence            4445544 455666 8888877655665433 333445667788899999999977776 55569998776 44566666


Q ss_pred             hhcccCCCC
Q 003517          396 IGKDRKVLN  404 (813)
Q Consensus       396 ~~~~~~~i~  404 (813)
                      .+-..++++
T Consensus       405 Aa~RM~Lmp  413 (438)
T COG3493         405 AADRMELMP  413 (438)
T ss_pred             hcchhcccc
Confidence            555555444

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=96.27  E-value=2.4  Score=46.40  Aligned_cols=128  Identities=16%  Similarity=0.101  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHHHHHCh--hHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchh-h
Q 003517          267 VCITLSMVLAASFVTDTIGI--HALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGAT-S  343 (813)
Q Consensus       267 ~~~~l~~~l~~~~~ae~~g~--~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~-~  343 (813)
                      +...+...+..+++.+.+++  ..++|+++.+.++.......-.+-+.+...    ..-+.=..+|.+++...+.... .
T Consensus       157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~~~----aqv~iG~~iG~~f~~~~l~~~~~~  232 (318)
T PF05145_consen  157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWLVNA----AQVLIGASIGSRFTRETLRELRRL  232 (318)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHHHH----HHHHHHHHHHccccHHHHHHHHHH
Confidence            34455566677777887777  457888877777653211111111122222    1122346779999877665432 3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccC
Q 003517          344 WGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRK  401 (813)
Q Consensus       344 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~  401 (813)
                      ++..++..+..+..-.+.+++..++.++++.+++.-   +.|-|.-++.+.....+.+
T Consensus       233 ~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~La---~aPGGl~eM~l~A~~l~~d  287 (318)
T PF05145_consen  233 LPPALLSTLLLLALCALFAWLLSRLTGIDFLTALLA---TAPGGLAEMALIALALGAD  287 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH---hCCccHHHHHHHHHHcCCC
Confidence            333444444555556777888889999999887633   6899988887776666543

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=96.22  E-value=0.2  Score=56.57  Aligned_cols=152  Identities=16%  Similarity=0.177  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCC-CCC---chHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchh
Q 003517          267 VCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPK-EGP---FAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGAT  342 (813)
Q Consensus       267 ~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~-~~~---~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~  342 (813)
                      +..++..+...+++.+.+|+++++|=.++|+++.. +..   ..++..+-+..+    =.-++...+|+.+|+..++...
T Consensus        11 ~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~lael----Gvi~LlF~~GLE~~~~~l~~~~   86 (397)
T COG0475          11 LLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAEL----GVVFLLFLIGLEFDLERLKKVG   86 (397)
T ss_pred             HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHH----hHHHHHHHHHHCcCHHHHHHhc
Confidence            45566666677789999999999999999999975 111   122333333343    3344567889999999887633


Q ss_pred             hHHHHHHHHHHHHHHHHHHH--HHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHH
Q 003517          343 SWGLLLLVILNACFGKIVGT--VVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTF  420 (813)
Q Consensus       343 ~~~~~~~ii~~~~~~K~~~~--~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~  420 (813)
                      ... ........+..=++..  +... .++.++..++.+|..+..-..  -+.+.+..|.|....+....++-..++.=.
T Consensus        87 ~~~-~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~--~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di  162 (397)
T COG0475          87 RSV-GLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSST--AIVLKILMELGLLKTREGQLILGALVFDDI  162 (397)
T ss_pred             hhh-hhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHH--HHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            221 2222222222222222  2223 589999999999988766543  144555566666666655554334333333


Q ss_pred             hHHHHH
Q 003517          421 ITTPIL  426 (813)
Q Consensus       421 i~~plv  426 (813)
                      ..-|++
T Consensus       163 ~~i~lL  168 (397)
T COG0475         163 AAILLL  168 (397)
T ss_pred             HHHHHH
Confidence            333333

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.17  E-value=0.19  Score=59.45  Aligned_cols=133  Identities=12%  Similarity=0.199  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCC-CCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHH
Q 003517          269 ITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKE-GPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLL  347 (813)
Q Consensus       269 ~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~-~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~  347 (813)
                      .++..+++++.++..++++.++|=.++|+++... ...-+. .+.++.+ ..+-+-++...+|+++|+..+....  ...
T Consensus        13 ~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~l-a~lGli~llF~~Gle~d~~~l~~~~--~~~   88 (558)
T PRK10669         13 GGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAPEL-AELGVILLMFGVGLHFSLKDLMAVK--SIA   88 (558)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHHHH-HHHHHHHHHHHhHhcCCHHHHHHHh--hHH
Confidence            3455666677778888999999999999998531 111111 1234444 4556666777889999998876422  111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHH
Q 003517          348 LLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQA  407 (813)
Q Consensus       348 ~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~  407 (813)
                      ....+...+.=++.++.....+++++.+++.+|..++.-..  .+++....+.+.++.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~~  146 (558)
T PRK10669         89 IPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQR  146 (558)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCcc
Confidence            11111112222333444556788999999999987776443  35555666667666544

>COG2855 Predicted membrane protein [Function unknown]

Probab=96.03  E-value=0.096  Score=56.30  Aligned_cols=111  Identities=14%  Similarity=0.088  Sum_probs=80.7

Q ss_pred             HHHHHChhHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHH
Q 003517          280 VTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKI  359 (813)
Q Consensus       280 ~ae~~g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~  359 (813)
                      ..+..|+++..=|.+.|+++....+...+...-++.. ...++.+=.++.|++++++++.+- .+. .+.+.+..+..-+
T Consensus        31 ~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs-~k~LLr~gIvLlG~~ltl~~i~~~-G~~-~v~~~~~~l~~t~  107 (334)
T COG2855          31 FSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFS-SKKLLRLGIVLLGFRLTLSDIADV-GGS-GVLIIAITLSSTF  107 (334)
T ss_pred             HhhhcCchHHHHHHHHHHHHhccccchhhhccchhhh-HHHHHHHHHHHHcceeeHHHHHHc-Ccc-HHHHHHHHHHHHH
Confidence            4455667788999999999986566665666666655 677788888999999999988762 222 2334444456667


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHH
Q 003517          360 VGTVVVAWSCKVPLRESLALGFIMNTKGLVELIV  393 (813)
Q Consensus       360 ~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~  393 (813)
                      +.+++.++++|++++.+..+|..-+.=|.-+++.
T Consensus       108 ~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA  141 (334)
T COG2855         108 LFAYFLGKLLGLDKKLALLIAAGSSICGASAIAA  141 (334)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHH
Confidence            7888888899999999999988766666544333

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments

Probab=95.88  E-value=0.087  Score=52.86  Aligned_cols=129  Identities=23%  Similarity=0.392  Sum_probs=83.8

Q ss_pred             HHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccCh-----hHHHhcchhhHHHHHHHHHH
Q 003517           64 IAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDI-----KSILRTGKKSLGIALAGITL  138 (813)
Q Consensus        64 i~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~-----~~l~~~~~~~~~ia~~~~~~  138 (813)
                      ++.+++|+++|-.....             ....+...+..+.+++|.+|+++--     +.+++.+++++.+.+..++-
T Consensus         2 l~~li~Gi~lG~~~~~~-------------~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlG   68 (191)
T PF03956_consen    2 LIALILGILLGYFLRPP-------------FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILG   68 (191)
T ss_pred             eeeHHHHHHHHHHhccc-------------ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            44577899888432211             1122668888999999999999854     45677889999999988888


Q ss_pred             HHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 003517          139 PFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAI  216 (813)
Q Consensus       139 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~  216 (813)
                      +++.+.+++.++....       ..++.++.-+.  =+.....+++|++  ..+.|.++.-+=++-+++++++.-++.
T Consensus        69 Sllgg~l~~~ll~~~~-------~~~lav~sG~G--wYSlsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~~~  135 (191)
T PF03956_consen   69 SLLGGLLASLLLGLSL-------KESLAVASGFG--WYSLSGVLITQLY--GPELGTIAFLSNLFREILAIILIPLLA  135 (191)
T ss_pred             HHHHHHHHHHHhcCCH-------HHHHHHHccCc--HHHhHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888887777763221       23333333221  1222233445444  668888888777777777776665443

Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=95.88  E-value=0.29  Score=52.98  Aligned_cols=128  Identities=15%  Similarity=0.149  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHHH----HHChhHHHHHHHHhhhcCC-CCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchh
Q 003517          268 CITLSMVLAASFVTD----TIGIHALFGAFVVGIIMPK-EGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGAT  342 (813)
Q Consensus       268 ~~~l~~~l~~~~~ae----~~g~~~~lgaf~aGL~l~~-~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~  342 (813)
                      .+.+++.....++++    ..++++.+=|.+.|+++.| .....+....-++.. ...++.+=-+..|.++++.++.+. 
T Consensus         4 ~l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i~~~-   81 (305)
T PF03601_consen    4 LLCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDILAL-   81 (305)
T ss_pred             HHHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHH-HHHHHHHHHHHHCccccHHHHHHh-
Confidence            344555555555555    3677888889999999987 444455555555544 567788888999999999988762 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HhcCCChHHHHHHHHHHhhhhHHHHHHHHhhc
Q 003517          343 SWGLLLLVILNACFGKIVGTVVVA-WSCKVPLRESLALGFIMNTKGLVELIVLNIGK  398 (813)
Q Consensus       343 ~~~~~~~ii~~~~~~K~~~~~l~~-~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~  398 (813)
                      .+..... .++.+..-+..++..+ +.+|++.+.+..+|...+.=|.-+++...-..
T Consensus        82 G~~~~~~-~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i  137 (305)
T PF03601_consen   82 GWKGLLI-IIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVI  137 (305)
T ss_pred             CccHHHH-HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccc
Confidence            2322222 2333333344444445 99999999999999887777765544443333

; GO: 0016021 integral to membrane

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=95.68  E-value=0.75  Score=46.13  Aligned_cols=106  Identities=20%  Similarity=0.282  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHhhccChhHHHhcchhhHHHH--H-HHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhcc-HHH
Q 003517          103 IGLLFFLFLVGLELDIKSILRTGKKSLGIA--L-AGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITA-FPV  178 (813)
Q Consensus       103 lgl~~llF~~Gle~d~~~l~~~~~~~~~ia--~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts-~~v  178 (813)
                      +.+.+.||..|++++++++++..|+...+.  + ..+++.-++++++++.+..     .+   .....|..+...+ -+.
T Consensus         2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~-----~~---~~~~~Gl~l~~~~P~~~   73 (187)
T PF01758_consen    2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLP-----LS---PALALGLLLVAACPGGP   73 (187)
T ss_dssp             -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT----------HHHHHHHHHHHHS-B-T
T ss_pred             hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CC---HHHHHHHHHHhcCCcHH
Confidence            457889999999999999998776644322  2 2233322334444422211     11   1233333332211 122


Q ss_pred             HHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003517          179 LARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALS  219 (813)
Q Consensus       179 v~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~  219 (813)
                      .+...+.+-  +.+.. ++.+...++.+.+.++.-+...+.
T Consensus        74 ~s~~~t~l~--~Gd~~-ls~~lt~istll~~~~~P~~~~l~  111 (187)
T PF01758_consen   74 ASNVFTYLA--GGDVA-LSVSLTLISTLLAPFLMPLLLYLL  111 (187)
T ss_dssp             HHHHHHHHT--T--HH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh--CCCcc-cccceeeHHHHHHHHHHHHHHHHH
Confidence            334444333  33332 666667777777777766555544

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>TIGR00841 bass bile acid transporter

Probab=95.68  E-value=3.1  Score=44.79  Aligned_cols=48  Identities=23%  Similarity=0.343  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHhhccChhHHHhcchh--hHHHHHH-HH-HHHHHHHHHHHHHH
Q 003517          102 NIGLLFFLFLVGLELDIKSILRTGKK--SLGIALA-GI-TLPFALGIGTSFVL  150 (813)
Q Consensus       102 ~lgl~~llF~~Gle~d~~~l~~~~~~--~~~ia~~-~~-~~~~~~~~~~~~~l  150 (813)
                      -..+.+.||..|+.++++++++..++  ....+.. .+ +.|.+ +++++.++
T Consensus        11 ~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Pll-a~~l~~~~   62 (286)
T TIGR00841        11 LILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLT-GFLLAKVF   62 (286)
T ss_pred             HHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence            33488899999999999999986653  3333333 33 34544 34444443

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>PRK05326 potassium/proton antiporter; Reviewed

Probab=95.55  E-value=0.3  Score=57.92  Aligned_cols=117  Identities=19%  Similarity=0.213  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCc--hHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHH
Q 003517          269 ITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPF--AGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGL  346 (813)
Q Consensus       269 ~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~--~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~  346 (813)
                      +++.+..+++.++..+|++.+++-.++|+++.....-  ...-.+-.+.+ ..+.+++.....|+++|+..+..  .+..
T Consensus        13 ~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i-~~l~L~~iLF~~Gl~~~~~~l~~--~~~~   89 (562)
T PRK05326         13 LLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLV-GNLALAVILFDGGLRTRWSSFRP--ALGP   89 (562)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHH-HHHHHHHHHHcCccCCCHHHHHH--HHHH
Confidence            3344445555667778888888888888888642111  00111223333 67888889999999999998875  3433


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHhcCCChHHHHHHHHHHhhhhH
Q 003517          347 LLLVILNACFGKIV-GTVVVAWSCKVPLRESLALGFIMNTKGL  388 (813)
Q Consensus       347 ~~~ii~~~~~~K~~-~~~l~~~~~~~~~re~~~lgl~l~~kG~  388 (813)
                      ...+....++.-.+ .++...++++++|.+++.+|.++++-..
T Consensus        90 ~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~  132 (562)
T PRK05326         90 ALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDA  132 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCch
Confidence            33333333333233 3445566789999999999988776654

>TIGR00783 ccs citrate carrier protein, CCS family

Probab=95.29  E-value=2  Score=46.99  Aligned_cols=119  Identities=16%  Similarity=0.217  Sum_probs=76.9

Q ss_pred             ChhHHHHHHHHhhhcCCCCCchHHHHHHHHHH---HHHhhHHHHHHHhccc-cchhhhhchhhHHHHHHHHHHHHHHHHH
Q 003517          285 GIHALFGAFVVGIIMPKEGPFAGVLIEKIEDM---VSGLFLPLYFAASGLK-TNVATIRGATSWGLLLLVILNACFGKIV  360 (813)
Q Consensus       285 g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~---~~~~~~plFF~~~G~~-~dl~~l~~~~~~~~~~~ii~~~~~~K~~  360 (813)
                      ++|+..-..++|.++....-..+.+.++...+   ...-+.+..++.+|+. +|+..+.+..+|. .+++++...++=.+
T Consensus       203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~-~vviiv~~Vlg~ii  281 (347)
T TIGR00783       203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQ-FVVICLSVVVAMIL  281 (347)
T ss_pred             cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchh-HhhhHHHHHHHHHH
Confidence            66888888888888775444556666655544   2333444445555766 7888776633343 34455555677788


Q ss_pred             HHHHHHHhcCCChHHH-HHHHHHHhhhh-HHHHHHHHhhcccCCCC
Q 003517          361 GTVVVAWSCKVPLRES-LALGFIMNTKG-LVELIVLNIGKDRKVLN  404 (813)
Q Consensus       361 ~~~l~~~~~~~~~re~-~~lgl~l~~kG-~v~l~~~~~~~~~~~i~  404 (813)
                      ++++.+++.|+-+-|+ +..|++|+.+| .=+++++..+...+++.
T Consensus       282 ~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp  327 (347)
T TIGR00783       282 GGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP  327 (347)
T ss_pred             HHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence            8999999999977776 66678887765 44556665555544443

These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters

Probab=94.87  E-value=0.81  Score=45.01  Aligned_cols=127  Identities=23%  Similarity=0.286  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHH-h-cccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhH
Q 003517           43 LVVAFTRFLAFL-L-KPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKS  120 (813)
Q Consensus        43 lil~~~~~~~~l-~-~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~  120 (813)
                      +.+.+..+++.+ . +++++-...|-+++|+++|-.  ++..+.    +  -.....+.+.++|+.+|++.+|++--++-
T Consensus         4 l~i~lG~llG~i~i~~~~~LG~a~G~L~vgL~~G~~--~~~~~~----~--~~~~~~~~l~~~GL~lFl~~VGl~aG~~F   75 (169)
T PF06826_consen    4 LGIALGYLLGRIKIPGGFSLGAAGGVLFVGLILGAL--GRTGPI----F--LPISAPSFLRQLGLALFLAAVGLSAGPGF   75 (169)
T ss_pred             HHHHHHHHhcceeeccceeccccHHHHHHHHHHHHh--hhccCC----C--CCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455554 3 666777777999999999942  221111    1  12345678999999999999999998765


Q ss_pred             H---HhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHH-HHhhccHHHHHHHHHH
Q 003517          121 I---LRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGV-SLSITAFPVLARILAE  185 (813)
Q Consensus       121 l---~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~e  185 (813)
                      +   |+.+.+...+++.-.++|.++++.+++++.     +.+.   ....|. +=+.|++|......+.
T Consensus        76 ~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~-----~l~~---~~~~G~~aGa~T~tp~L~~A~~~  136 (169)
T PF06826_consen   76 FSSLKRGGLKLLLLGVIITLVPLLIALVIGRYLF-----KLNP---GIAAGILAGALTSTPALAAAQEA  136 (169)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCH---HHHHHHHHccccCcHHHHHHHHh
Confidence            5   455566666666666667766666665332     1221   233333 3356777777666544

Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.

>TIGR00698 conserved hypothetical integral membrane protein

Probab=94.81  E-value=1.2  Score=48.92  Aligned_cols=123  Identities=12%  Similarity=0.060  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHHH-----HChhHHHHHHHHhhhcCCCC--CchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhch
Q 003517          269 ITLSMVLAASFVTDT-----IGIHALFGAFVVGIIMPKEG--PFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGA  341 (813)
Q Consensus       269 ~~l~~~l~~~~~ae~-----~g~~~~lgaf~aGL~l~~~~--~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~  341 (813)
                      +.+.+.+.+.++++.     .++++.+=|.+.|+++.|..  +..+....-++ +....++-+=-+..|+++++.++...
T Consensus         9 l~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~~k~lLr~gIVLlG~~l~~~~i~~~   87 (335)
T TIGR00698         9 QMALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FAKPFLLRIGITLYGFRLTFPYIADV   87 (335)
T ss_pred             HHHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchHH-HHHHHHHHHHHHHHCccccHHHHHHh
Confidence            344444555555553     47888888999999988722  22222222233 33456666777889999999988652


Q ss_pred             hhHHHHHHHHHHHHHHHHHH-HHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHH
Q 003517          342 TSWGLLLLVILNACFGKIVG-TVVVAWSCKVPLRESLALGFIMNTKGLVELIVL  394 (813)
Q Consensus       342 ~~~~~~~~ii~~~~~~K~~~-~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~  394 (813)
                       .+. .+.+.+.....-+.. .++..+.+|++++.+..+|..-+-=|.-+++..
T Consensus        88 -G~~-~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~  139 (335)
T TIGR00698        88 -GPN-EIVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAI  139 (335)
T ss_pred             -hHH-HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHh
Confidence             222 222223333334444 444458999999999998887776676544433

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=94.68  E-value=0.83  Score=55.06  Aligned_cols=70  Identities=14%  Similarity=0.204  Sum_probs=50.4

Q ss_pred             HHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHhhhhHH
Q 003517          318 SGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWS--CKVPLRESLALGFIMNTKGLV  389 (813)
Q Consensus       318 ~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~--~~~~~re~~~lgl~l~~kG~v  389 (813)
                      ..+.+.+-.+..|++++...+..  .|..+..+++.+...-++++.+.+++  .+++|..++.+|.++++-.-+
T Consensus        75 teIvL~I~LFa~Gl~L~~~~Lrr--~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV  146 (810)
T TIGR00844        75 SRILLCLQVFAVSVELPRKYMLK--HWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV  146 (810)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence            56777888888999999998876  45555444444444455555555543  499999999999999887743

This model is specific for the fungal members of this family.

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter

Probab=94.59  E-value=0.27  Score=57.98  Aligned_cols=81  Identities=16%  Similarity=0.280  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHH-hcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChh
Q 003517           41 ICLVVAFTRFLAFL-LKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIK  119 (813)
Q Consensus        41 i~lil~~~~~~~~l-~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~  119 (813)
                      +.+++.++++++.+ .+.+++-.+.|-+++|+++|-....         .       -+.+.++|+++|+|.+|++.-+.
T Consensus        15 lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~---------i-------~~~v~~~gl~lFvy~vG~~~Gp~   78 (562)
T TIGR03802        15 LFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQ---------I-------DPGVKAVFFALFIFAIGYEVGPQ   78 (562)
T ss_pred             HHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCC---------C-------ChHHHHHHHHHHHHHhhhccCHH
Confidence            34444445555554 4556777788999999999953221         1       12377899999999999999998


Q ss_pred             HHHhcchhhHHHHHHHHH
Q 003517          120 SILRTGKKSLGIALAGIT  137 (813)
Q Consensus       120 ~l~~~~~~~~~ia~~~~~  137 (813)
                      -++.-+|+.+.+.+.+++
T Consensus        79 Ff~~l~~~g~~~~~~a~~   96 (562)
T TIGR03802        79 FFASLKKDGLREIILALV   96 (562)
T ss_pred             HHHHHHhccHHHHHHHHH
Confidence            877655554444444443

All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).

>PRK03818 putative transporter; Validated

Probab=94.54  E-value=1.1  Score=52.79  Aligned_cols=127  Identities=15%  Similarity=0.257  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHH-hcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccCh
Q 003517           40 QICLVVAFTRFLAFL-LKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDI  118 (813)
Q Consensus        40 ~i~lil~~~~~~~~l-~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~  118 (813)
                      -+.+.+.++.+++.+ ++.+++- +.|-+++|+++|-..  .  . ...-.   .......+.++|+.+|+|.+|++.-+
T Consensus        10 ~l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~--~--~-~~~~~---~~~~~~~~~~~gl~lFv~~vGl~~Gp   80 (552)
T PRK03818         10 ILALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFV--S--Q-FGLTL---DSDMLHFIQEFGLILFVYTIGIQVGP   80 (552)
T ss_pred             HHHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhccc--c--c-cCccc---ChHHHHHHHHHHHHHHHHHHhhcccH
Confidence            344444555555543 3334444 488999999999421  0  0 00001   23456779999999999999999998


Q ss_pred             hHHH---hcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHH-HHhhccHHHHHHHHH
Q 003517          119 KSIL---RTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGV-SLSITAFPVLARILA  184 (813)
Q Consensus       119 ~~l~---~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~  184 (813)
                      ..+.   +.+.+...+++.-.+++.++++.+.++++    .+  .   ....|+ +=+.|++|.+....+
T Consensus        81 ~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~---~~~~G~~aGa~T~tp~l~aa~~  141 (552)
T PRK03818         81 GFFSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFG----IP--L---PVMLGIFSGAVTNTPALGAGQQ  141 (552)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC----CC--H---HHHHHHhhccccccHHHHHHHH
Confidence            7665   44555555666555666666555433332    12  1   233333 335677776665544

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=94.39  E-value=1.1  Score=55.65  Aligned_cols=43  Identities=9%  Similarity=0.017  Sum_probs=29.7

Q ss_pred             ccceeEEEecCCCcChHHHHHHHHHHh--cCCCeEEEEEEeecCC
Q 003517          621 EVSYSVVVPFFGGLDDCEALAYGMRMA--EHPGIKLTVVKFVAPK  663 (813)
Q Consensus       621 ~~~~~i~v~f~GG~ddreAL~~a~rma--~~~~v~ltvvr~~~~~  663 (813)
                      ++..||++.+-+-.+-+..+.++.-..  +.+...+.++|+++-.
T Consensus       456 ~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~  500 (832)
T PLN03159        456 DAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELT  500 (832)
T ss_pred             CCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeec
Confidence            445799888876555566677765543  3456899999998643

>COG2855 Predicted membrane protein [Function unknown]

Probab=93.55  E-value=13  Score=40.34  Aligned_cols=86  Identities=19%  Similarity=0.208  Sum_probs=58.6

Q ss_pred             hcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHH
Q 003517           55 LKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALA  134 (813)
Q Consensus        55 ~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~  134 (813)
                      ....++|..+--|+.||++|..  ...+.-   .. ..-...-..+-++|++    +.|.+++++++...+.+.+.+-..
T Consensus        32 ~~~~~l~al~lAIllGi~l~~l--~~~~~~---~~-~GI~fs~k~LLr~gIv----LlG~~ltl~~i~~~G~~~v~~~~~  101 (334)
T COG2855          32 SIHLGLSALTLAILLGILLGIL--PQIPAQ---TS-AGITFSSKKLLRLGIV----LLGFRLTLSDIADVGGSGVLIIAI  101 (334)
T ss_pred             hhhcCchHHHHHHHHHHHHhcc--ccchhh---hc-cchhhhHHHHHHHHHH----HHcceeeHHHHHHcCccHHHHHHH
Confidence            4457799999999999999932  222210   00 0111233446666766    468899999999999999888887


Q ss_pred             HHHHHHHHHHHHHHHH
Q 003517          135 GITLPFALGIGTSFVL  150 (813)
Q Consensus       135 ~~~~~~~~~~~~~~~l  150 (813)
                      .+..++++++.++.++
T Consensus       102 ~l~~t~~~~~~lg~~l  117 (334)
T COG2855         102 TLSSTFLFAYFLGKLL  117 (334)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            7777777776666544

>PRK04972 putative transporter; Provisional

Probab=93.21  E-value=0.65  Score=54.76  Aligned_cols=119  Identities=24%  Similarity=0.358  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHH-hcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChh
Q 003517           41 ICLVVAFTRFLAFL-LKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIK  119 (813)
Q Consensus        41 i~lil~~~~~~~~l-~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~  119 (813)
                      +.+.+.+..+++.+ ++++++-...|-+++|+++|-....         .|       ..+.++|+.+|+|.+|++.-+.
T Consensus        17 lf~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~---------~~-------~~~~~~gl~lF~~~vG~~~Gp~   80 (558)
T PRK04972         17 LFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFS---------IN-------TDALNLGFMLFIFCVGVEAGPN   80 (558)
T ss_pred             HHHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCC---------CC-------hHHHHHHHHHHHHHHhhhhhHH
Confidence            44455555555555 5667777788999999999953221         11       1245899999999999999987


Q ss_pred             HHH---hcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHH-HHhhccHHHHHHHHH
Q 003517          120 SIL---RTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGV-SLSITAFPVLARILA  184 (813)
Q Consensus       120 ~l~---~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~  184 (813)
                      -+.   +.+.+...+++...++++++++.++++++      .+.   ....|+ +=+.|++|.+.....
T Consensus        81 F~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~~~G~~aGa~T~tp~l~~a~~  140 (558)
T PRK04972         81 FFSIFFRDGKNYLMLALVMVGSALVIALGLGKLFG------WDI---GLTAGMLAGSMTSTPVLVGAGD  140 (558)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC------CCH---HHHHHHhhccccCcHHHHHHHH
Confidence            664   44555555666555666555555444432      221   122332 335666666665544

>PRK10490 sensor protein KdpD; Provisional

Probab=92.98  E-value=0.5  Score=59.16  Aligned_cols=124  Identities=14%  Similarity=0.092  Sum_probs=81.6

Q ss_pred             ccceeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHH
Q 003517          451 TEFRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEA  530 (813)
Q Consensus       451 ~elriLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~  530 (813)
                      ..-|||||+.+..+...+++-+.-++..  .+...+++|+.....+..+                  ....+++.+.++ 
T Consensus       249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~--~~a~~~~l~V~~~~~~~~~------------------~~~~~~l~~~~~-  307 (895)
T PRK10490        249 TRDAILLCIGHNTGSEKLVRTAARLAAR--LGSVWHAVYVETPRLHRLP------------------EKKRRAILSALR-  307 (895)
T ss_pred             cCCeEEEEECCCcchHHHHHHHHHHHHh--cCCCEEEEEEecCCcCcCC------------------HHHHHHHHHHHH-
Confidence            4568999999999999999888877754  5677999998642111100                  022334445554 


Q ss_pred             hhhcCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCC-CceEEEe
Q 003517          531 YQQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAP-CSVGIFV  607 (813)
Q Consensus       531 ~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~ap-CsVgIlv  607 (813)
                      +++.-+..+...    ..+++.+.|.+.|++++++.||||=+++.++   +.     ..++.+++++++| -+|-|+-
T Consensus       308 lA~~lGa~~~~~----~~~dva~~i~~~A~~~~vt~IViG~s~~~~~---~~-----~~s~~~~l~r~~~~idi~iv~  373 (895)
T PRK10490        308 LAQELGAETATL----SDPAEEKAVLRYAREHNLGKIIIGRRASRRW---WR-----RESFADRLARLGPDLDLVIVA  373 (895)
T ss_pred             HHHHcCCEEEEE----eCCCHHHHHHHHHHHhCCCEEEECCCCCCCC---cc-----CCCHHHHHHHhCCCCCEEEEe
Confidence            444322223211    3368999999999999999999998765433   10     1145778999998 5666653

>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain

Probab=92.90  E-value=0.74  Score=44.57  Aligned_cols=114  Identities=18%  Similarity=0.189  Sum_probs=64.0

Q ss_pred             CChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcch----hhHHHHHHH
Q 003517           60 QPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGK----KSLGIALAG  135 (813)
Q Consensus        60 ~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~----~~~~ia~~~  135 (813)
                      +-...|-+++|+++|-  +++..+..-. .|   ......+.++|+.+|++.+|++--.+.+..-.+    ....++..-
T Consensus        21 LG~~~G~L~vgL~~G~--~~~~~p~~~~-~p---~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v   94 (154)
T TIGR01625        21 LGNAGGVLFVGLLLGH--FGATGPLTWY-IP---FSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALI   94 (154)
T ss_pred             ecccHHHHHHHHHHHh--ccccCCccee-cC---hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHH
Confidence            3337789999999995  3332221111 11   245677999999999999999999876654333    223333333


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHH-HHhhccHHHHHHHHHHcC
Q 003517          136 ITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGV-SLSITAFPVLARILAELK  187 (813)
Q Consensus       136 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~el~  187 (813)
                      .++|.+++..+..   +.+  +.+.   ....|+ +=+.|++|.+....+..+
T Consensus        95 ~~~~~~~~~~~~~---~~~--~~~~---~~~~G~~aGa~T~tpaL~aa~~~~~  139 (154)
T TIGR01625        95 TVVPTLLVAVALI---KLL--RINY---ALTAGMLAGATTNTPALDAANDTLR  139 (154)
T ss_pred             HHHHHHHHHHHHH---HHh--CCCH---HHHHHHHhccccChHHHHHHHHHhc
Confidence            3344433333332   222  1221   234444 346788887776655443

This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form

Probab=92.84  E-value=1.2  Score=52.31  Aligned_cols=115  Identities=18%  Similarity=0.301  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCchH--HHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHH
Q 003517          270 TLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAG--VLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLL  347 (813)
Q Consensus       270 ~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~~--~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~  347 (813)
                      .++.+.+...+++.++++..++-+++|+++... +...  .+..  + ....+++|......|+++|...+..  .+..+
T Consensus         6 l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~-~~~~~~~~~~--~-~~~~~~Lp~lLF~~g~~~~~~~l~~--~~~~i   79 (525)
T TIGR00831         6 LVMLATAVAVTVKFIRLPYPIALILAGLLLGLA-GLLPEVPLDR--E-IVLFLFLPPLLFEAAMNTDLRELRE--NFRPI   79 (525)
T ss_pred             HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhc-cccCCCCCCH--H-HHHHHHHHHHHHHHHhcCCHHHHHH--HHHHH
Confidence            334444445566667777777777777776521 1110  0111  1 1245788888899999999998876  33333


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHH
Q 003517          348 LLVILNACFG-KIVGTVVVAWSCKVPLRESLALGFIMNTKGLVE  390 (813)
Q Consensus       348 ~~ii~~~~~~-K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~  390 (813)
                      ..+.+...+. -.+.++...+..++|+..++.+|.++++...+.
T Consensus        80 ~~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpva  123 (525)
T TIGR00831        80 ALIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVA  123 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHH
Confidence            3333333322 233333344467999999999999998887654

This model is specific for the bacterial members of this family.

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=92.08  E-value=1.2  Score=43.20  Aligned_cols=97  Identities=18%  Similarity=0.201  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHhcccCCC--hhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHH
Q 003517           44 VVAFTRFLAFLLKPLRQP--RVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSI  121 (813)
Q Consensus        44 il~~~~~~~~l~~~l~~P--~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l  121 (813)
                      .+.++.+.+++++++|+|  .++|-++++.++.-  .|..+     .      ..-..+.+++.+++--.+|.+++.+.+
T Consensus         3 ~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~--~~~~~-----~------~~P~~~~~~~qviiG~~iG~~f~~~~l   69 (156)
T TIGR03082         3 LLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSL--AGGLE-----I------TLPPWLLALAQVVIGILIGSRFTREVL   69 (156)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh--cCCcc-----C------CCCHHHHHHHHHHHHHHHHccCCHHHH
Confidence            456677888999999988  66677776666552  22111     0      112246667777888899999999999


Q ss_pred             HhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003517          122 LRTGKKSLGIALAGITLPFALGIGTSFVLRSTV  154 (813)
Q Consensus       122 ~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~  154 (813)
                      ++..+... .++...++..+.+.+.++++.+..
T Consensus        70 ~~~~~~~~-~~l~~~~~~l~~~~~~~~~l~~~~  101 (156)
T TIGR03082        70 AELKRLWP-AALLSTVLLLALSALLAWLLARLT  101 (156)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87765443 344555566666777777776544

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=91.58  E-value=7  Score=37.95  Aligned_cols=121  Identities=16%  Similarity=0.146  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHHChh--HHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchh-hHHHH
Q 003517          271 LSMVLAASFVTDTIGIH--ALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGAT-SWGLL  347 (813)
Q Consensus       271 l~~~l~~~~~ae~~g~~--~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~-~~~~~  347 (813)
                      +.+....+++.+.+|+.  .++|+.+++.++.-.....-.+-+.+..+    -.-+.=..+|.+++...+.... .+...
T Consensus         4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~~~~----~qviiG~~iG~~f~~~~l~~~~~~~~~~   79 (156)
T TIGR03082         4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWLLAL----AQVVIGILIGSRFTREVLAELKRLWPAA   79 (156)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHHHHH----HHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            44455566677777775  67888888877753221111111222222    2223346789999877765533 33334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhc
Q 003517          348 LLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGK  398 (813)
Q Consensus       348 ~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~  398 (813)
                      ....+..++.-++.+++..+..++++.+++ +|  ..|-|.-++.......
T Consensus        80 l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~~A~~~  127 (156)
T TIGR03082        80 LLSTVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAALAAEL  127 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHHHHHHh
Confidence            444455556667778888999999999886 33  4788887777665543

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=91.58  E-value=13  Score=38.09  Aligned_cols=111  Identities=14%  Similarity=0.196  Sum_probs=72.0

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 003517          306 AGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNT  385 (813)
Q Consensus       306 ~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~  385 (813)
                      ++.+..-+++-+-.+-.|+|       =+...+..  .|..+..-++++.+.-++.+++.+++++.+..-  .  ..+.|
T Consensus        61 ~~~i~~lLgPAtVAlAvPLY-------kq~~~ik~--~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~--~--~Sl~P  127 (230)
T COG1346          61 GQWINFLLGPATVALAVPLY-------KQRHLIKR--HWKPILAGVLVGSVVAIISGVLLAKLFGLSPEL--I--LSLLP  127 (230)
T ss_pred             cHHHHHHHHHHHHHHhhHHH-------HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH--H--HHhcc
Confidence            34444555555555666666       23444544  566666666666677788889999999987652  2  23578


Q ss_pred             hhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHhHHHHHHHh
Q 003517          386 KGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAI  429 (813)
Q Consensus       386 kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~l  429 (813)
                      |....-+...+..+.|-+.+-+-...+++-++.+.+.+++.+++
T Consensus       128 kSvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~  171 (230)
T COG1346         128 KSVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL  171 (230)
T ss_pred             cccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            98888777788888887766555555555556566666666654

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter

Probab=91.45  E-value=1.8  Score=51.22  Aligned_cols=116  Identities=20%  Similarity=0.298  Sum_probs=72.4

Q ss_pred             ccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHH---HhcchhhHHHHH
Q 003517           57 PLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSI---LRTGKKSLGIAL  133 (813)
Q Consensus        57 ~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l---~~~~~~~~~ia~  133 (813)
                      ++.+-...|-+++|+++|-  +++..+.... .|   ......+.++|+.+|++.+|++--++.+   ++.+.+...+++
T Consensus       412 p~~lg~~~g~l~~gl~~g~--~~~~~~~~~~-~p---~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~  485 (562)
T TIGR03802       412 PLTLGTGGGALISGLVFGW--LRSKHPTFGN-IP---SSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGI  485 (562)
T ss_pred             ceeehhhHHHHHHHHHHHH--hcccCCccee-cC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHH
Confidence            3444556788999999985  3322211101 22   3456679999999999999999887655   455566666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHH-HHhhccHHHHHHHHHHc
Q 003517          134 AGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGV-SLSITAFPVLARILAEL  186 (813)
Q Consensus       134 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~el  186 (813)
                      .-.++|.++++.+++++.     +.+   .....|+ +=+.|++|.+....+..
T Consensus       486 ~~~~~~~~~~~~~~~~~~-----~~~---~~~~~G~~aG~~t~t~~l~~a~~~~  531 (562)
T TIGR03802       486 VVTILPLIITMLIGKYVL-----KYD---PALLLGALAGARTATPALGAVLERA  531 (562)
T ss_pred             HHHHHHHHHHHHHHHHHh-----CCC---HHHHHHHhhccCCCcHHHHHHHHhc
Confidence            666677766666664332     111   2244443 34678888777665543

All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate

Probab=91.02  E-value=3.6  Score=45.90  Aligned_cols=116  Identities=11%  Similarity=0.109  Sum_probs=67.8

Q ss_pred             HHhhHHHHHHHhccccchhhhhchh-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH-HH-HhhhhHHHHHHH
Q 003517          318 SGLFLPLYFAASGLKTNVATIRGAT-SWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALG-FI-MNTKGLVELIVL  394 (813)
Q Consensus       318 ~~~~~plFF~~~G~~~dl~~l~~~~-~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lg-l~-l~~kG~v~l~~~  394 (813)
                      .++++-.||..+|+..++..+..+. .......+.....+...+.....+..++.++.-.+..| .. .+-.|. +.++.
T Consensus        66 ~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGT-Aaa~g  144 (368)
T PF03616_consen   66 QDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGT-AAAFG  144 (368)
T ss_pred             HHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccH-HHHHH
Confidence            4567778999999999988776532 11112222222344556555666777888877665443 12 233444 33555


Q ss_pred             Hhhccc-CCCChHHHHHH--HHHHHHHHHhHHHHHHHhhcccc
Q 003517          395 NIGKDR-KVLNDQAFAIL--VLMALFTTFITTPILMAIYKPAR  434 (813)
Q Consensus       395 ~~~~~~-~~i~~~~~~~l--vl~~vv~t~i~~plv~~l~~~~~  434 (813)
                      ....+. |.-+.....+.  .+-.+...++..|+.+|+.|+.+
T Consensus       145 ~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~  187 (368)
T PF03616_consen  145 PTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRKGK  187 (368)
T ss_pred             HHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            555555 66554444333  23334456778899999887654

The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane

>COG2985 Predicted permease [General function prediction only]

Probab=89.81  E-value=2.2  Score=47.93  Aligned_cols=78  Identities=27%  Similarity=0.407  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHhhccChhH---HHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHH-HHhhccHH
Q 003517          102 NIGLLFFLFLVGLELDIKS---ILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGV-SLSITAFP  177 (813)
Q Consensus       102 ~lgl~~llF~~Gle~d~~~---l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~  177 (813)
                      ++|+++|.+.+|+|--+..   +|+.+++-..+++.-    ++.+...++++++.+  +++..   +..|. +-+.|++|
T Consensus        62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~--~~~~~---~~~Gm~sGAlTsTP  132 (544)
T COG2985          62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI----VIAALLLAWVLHKLF--GIDLG---LIAGMFSGALTSTP  132 (544)
T ss_pred             hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhhc--CCCHH---HhhhhhcccccCCc
Confidence            8999999999999998765   466777766665544    344445556665554  33321   22222 22345544


Q ss_pred             HH---HHHHHHcCc
Q 003517          178 VL---ARILAELKL  188 (813)
Q Consensus       178 vv---~~iL~el~l  188 (813)
                      ..   ..+|.|++.
T Consensus       133 ~L~aa~~~L~~lg~  146 (544)
T COG2985         133 GLGAAQDILRELGA  146 (544)
T ss_pred             hhHHHHHHHHhhcc
Confidence            44   456777773

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=89.81  E-value=2.7  Score=47.15  Aligned_cols=136  Identities=11%  Similarity=0.179  Sum_probs=71.8

Q ss_pred             HHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHH-HHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003517          289 LFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLY-FAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAW  367 (813)
Q Consensus       289 ~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plF-F~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~  367 (813)
                      ++...++|....+..-+.++-.+.+..++..+++|.+ |..++-..+...+.+   ++...+..++..+.-++..++..+
T Consensus         9 i~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~   85 (385)
T PF03547_consen    9 IFLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLS---LWFIPVFAFIIFILGLLLGFLLSR   85 (385)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334455555554445566777888899899999998 445554444544443   333333333333333555666777


Q ss_pred             hcCCChHHHH--HHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHhHHHHHHHhhcc
Q 003517          368 SCKVPLRESL--ALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIYKP  432 (813)
Q Consensus       368 ~~~~~~re~~--~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~l~~~  432 (813)
                      +++.+.++..  .++...+.-|.+.+-+.......     +.....++..++..++.-++...+..+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~-----~~~~~~~~~~~~~~i~~~~~~~~l~~~  147 (385)
T PF03547_consen   86 LFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGE-----RGVAYAIIFDVVNNIILWSLGYFLLES  147 (385)
T ss_pred             hcCCCcccceEEEecccCCcchhhHHHHHHHHhcc-----hhhhhehHHHHhhHHHHHHHHHHhhcc
Confidence            7777776653  33333455555555555443332     222333333444444444444444443

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=89.49  E-value=28  Score=35.97  Aligned_cols=108  Identities=13%  Similarity=0.117  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhH
Q 003517          309 LIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGL  388 (813)
Q Consensus       309 l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~  388 (813)
                      +..-+.+-+-.+-+|+|       -+...+..  .|..+.+-++++.+.-+.++++.++++|.+..    +-..|.+|..
T Consensus        67 l~~lLgPAtVALAvPLY-------~q~~~lk~--~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~----~~~Sl~pKSV  133 (232)
T PRK04288         67 ISFFLEPATIAFAIPLY-------KKRDVLKK--YWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA----VMASMLPQAA  133 (232)
T ss_pred             HHHHHHHHHHHHHHHHH-------HhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhHhh
Confidence            33334444445556655       23444443  45545555555666677888888999988764    2334689998


Q ss_pred             HHHHHHHhhcccCCCChHHHHHHHHHHHHHHHhHHHHHHHh
Q 003517          389 VELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAI  429 (813)
Q Consensus       389 v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~l  429 (813)
                      ..-+...+..+.|-+.+-.-...+++-++..++.+++.+++
T Consensus       134 TtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~  174 (232)
T PRK04288        134 TTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF  174 (232)
T ss_pred             hHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            77777777777776654444444455555555555555543

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)

Probab=89.04  E-value=40  Score=38.03  Aligned_cols=116  Identities=14%  Similarity=0.085  Sum_probs=72.0

Q ss_pred             HHhhHHHHHHHhccccchhhhhchhhH-HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH-HHH-hhhhHHHHHHH
Q 003517          318 SGLFLPLYFAASGLKTNVATIRGATSW-GLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALG-FIM-NTKGLVELIVL  394 (813)
Q Consensus       318 ~~~~~plFF~~~G~~~dl~~l~~~~~~-~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lg-l~l-~~kG~v~l~~~  394 (813)
                      .++|+-+||..+|+..++..++.+... .....+..+..+...+.....+..++++..-+...| ..| +-+|.. .+..
T Consensus        66 ~~~lm~~fFatigLga~~~~l~~gg~~l~~~~~~~~~l~~~Qn~vGv~la~~~gl~P~~Gll~gsi~~~GGHGTA-aA~g  144 (398)
T TIGR00210        66 RDPLMLIFFTTIGLSANFKSLLKGGKPLLIFLATAVGFLVIQNAVGIGMASLLGQAPLMGLLAGSITLSGGHGTG-AAWS  144 (398)
T ss_pred             HHHHHHHHHHHhhhcCChHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCccCCCCCcHH-HHHH
Confidence            367888999999999999887653221 112222233456677777777789999998777632 222 445553 3444


Q ss_pred             Hhhcc-cCCCChHHHHHH--HHHHHHHHHhHHHHHHHhhcccc
Q 003517          395 NIGKD-RKVLNDQAFAIL--VLMALFTTFITTPILMAIYKPAR  434 (813)
Q Consensus       395 ~~~~~-~~~i~~~~~~~l--vl~~vv~t~i~~plv~~l~~~~~  434 (813)
                      ....+ .|.-+.....+.  .+-.+..+++..|+++++.++.+
T Consensus       145 ~~f~e~~G~~~a~~lgla~AT~GLv~g~liGgpi~~~lirk~~  187 (398)
T TIGR00210       145 PVFYDNYGFRNATEIAIACATFGLVFGGIIGGPVAKFLIIRNK  187 (398)
T ss_pred             HHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            44434 466555443332  34455667788899999776543

>PRK04972 putative transporter; Provisional

Probab=87.39  E-value=5.5  Score=47.04  Aligned_cols=132  Identities=17%  Similarity=0.212  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHHhcc-----cCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhc
Q 003517           41 ICLVVAFTRFLAFLLKP-----LRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLE  115 (813)
Q Consensus        41 i~lil~~~~~~~~l~~~-----l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle  115 (813)
                      +++-++++.+++.+-=+     +++-.--|.+++|+++|-  +++..+.... .|   .....++.++|+.+|+..+|+.
T Consensus       386 ~~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~--~~~~~~~~~~-~p---~~a~~~l~~~GL~lFla~vGl~  459 (558)
T PRK04972        386 FCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGF--LRANHPTFGY-IP---QGALNMVKEFGLMVFMAGVGLS  459 (558)
T ss_pred             HHHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHh--ccccCCCcee-eC---HHHHHHHHHHhHHHHHHHHHHh
Confidence            34444455555554333     334445679999999994  3333322111 22   3456789999999999999998


Q ss_pred             cChhHH---HhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHH-HHHhhccHHHHHHHHHHc
Q 003517          116 LDIKSI---LRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMG-VSLSITAFPVLARILAEL  186 (813)
Q Consensus       116 ~d~~~l---~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~el  186 (813)
                      --.+.+   ++.+.+.+.+++.-.++|.++++.+++++..     .+   ....+| ++=+.|++|......+..
T Consensus       460 aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k-----~~---~~~~~G~~aG~~t~~~~l~~~~~~~  526 (558)
T PRK04972        460 AGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLR-----MN---RALLFGAIMGARTCAPAMEIISDTA  526 (558)
T ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CC---HHHHHHHHhCCCCCcHHHHHHHhhc
Confidence            876544   4556666677777777777777777754432     11   224444 345678888776654443

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=87.19  E-value=15  Score=40.14  Aligned_cols=134  Identities=17%  Similarity=0.211  Sum_probs=77.7

Q ss_pred             cCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHH
Q 003517           58 LRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGIT  137 (813)
Q Consensus        58 l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~  137 (813)
                      ++.|.+++.+ +|+++......         .|..-.+.++.+++...-+-||..|+.++.+.+++..+......+.-.+
T Consensus       180 ~~nP~iia~i-~Gl~~~~~~i~---------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~kli  249 (321)
T TIGR00946       180 IKFPPLWAPL-LSVILSLVGFK---------MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFL  249 (321)
T ss_pred             HhCCChHHHH-HHHHHHHHhhc---------CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHH
Confidence            5778888755 45776643221         3333467899999999999999999999998887776666655555554


Q ss_pred             H-HHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHH
Q 003517          138 L-PFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLA  213 (813)
Q Consensus       138 ~-~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~  213 (813)
                      + |.+. +++...+.    .+    ....-..+.++.+.+++...++.+.--.+.   +.+-+...++-+++++.+.
T Consensus       250 l~P~i~-~~~~~~~~----l~----~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~---~~aa~~v~~sT~ls~~tlp  314 (321)
T TIGR00946       250 VQPAVM-AGISKLIG----LR----GLELSVAILQAALPGGAVAAVLATEYEVDV---ELASTAVTLSTVLSLISLP  314 (321)
T ss_pred             HHHHHH-HHHHHHhC----CC----hHHHHHHHHHHcCChhhHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHHHH
Confidence            3 5443 33333332    11    122344445555555555666554331333   4444444445555544443

>TIGR00808 malonate_madM malonate transporter, MadM subunit

Probab=87.12  E-value=8.5  Score=38.36  Aligned_cols=106  Identities=20%  Similarity=0.318  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHhccc---CCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHH-------HHHH
Q 003517           41 ICLVVAFTRFLAFLLKPL---RQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLL-------FFLF  110 (813)
Q Consensus        41 i~lil~~~~~~~~l~~~l---~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~-------~llF  110 (813)
                      +.++-+..++.+++.||+   |++.----|+.|+++.-.+ |....-      .+....+..++-+|++       |-.-
T Consensus        18 Fa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~TgG------~kGlaDi~lfsGiglmGGaMlRDfAIv   90 (254)
T TIGR00808        18 FAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTGG------EKGLADIAIFGGFGLMGGAMLRDLAIV   90 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccCC------ccccchhhhhcchhhhhhHHHHHHHHH
Confidence            333334444445555554   5666666778888876321 111000      1223334444444443       2234


Q ss_pred             HHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003517          111 LVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRST  153 (813)
Q Consensus       111 ~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~  153 (813)
                      ....|.|.+++||.+..-..--+.+.++||+.|..+++.+++.
T Consensus        91 aTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~  133 (254)
T TIGR00808        91 ATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYR  133 (254)
T ss_pred             HHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            6678999999999999888777889999999999999999764

The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.

>PRK03818 putative transporter; Validated

Probab=86.91  E-value=5.4  Score=47.08  Aligned_cols=106  Identities=23%  Similarity=0.305  Sum_probs=67.4

Q ss_pred             hHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHh----cchhhHHHHHHHHHH
Q 003517           63 VIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILR----TGKKSLGIALAGITL  138 (813)
Q Consensus        63 ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~----~~~~~~~ia~~~~~~  138 (813)
                      .-|-+++|+++|-  ++...+... -.|   ......+.++|+.+|+..+|++--...+..    .+.+...+++.-.++
T Consensus       403 ~~G~L~~gl~~g~--~~~~~~~~~-~~p---~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~  476 (552)
T PRK03818        403 AGGPLIVALILGR--IGSIGKLYW-FMP---PSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAV  476 (552)
T ss_pred             chHHHHHHHHHHh--ccCCCCcee-ecC---HHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHH
Confidence            4678999999994  333222111 122   245667899999999999999988776654    345566666777777


Q ss_pred             HHHHHHHHHHHHHHhhhcCCChhHHHHHHHH-HHhhccHHHHHHH
Q 003517          139 PFALGIGTSFVLRSTVLKGANQAPLLVFMGV-SLSITAFPVLARI  182 (813)
Q Consensus       139 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~i  182 (813)
                      |.++++.++.++..     .+   ....+|. +=+.|++|.+...
T Consensus       477 ~~~~~~~~~~~~~~-----~~---~~~~~G~~aG~~t~tp~l~~a  513 (552)
T PRK03818        477 PLLIVGILARMLAK-----MN---YLTLCGMLAGSMTDPPALAFA  513 (552)
T ss_pred             HHHHHHHHHHHHHc-----CC---HHHHHHHHhccCCCcHHHHHH
Confidence            77777766544321     11   2244443 4467888876554

>PRK10490 sensor protein KdpD; Provisional

Probab=86.76  E-value=2.9  Score=52.47  Aligned_cols=124  Identities=10%  Similarity=0.024  Sum_probs=79.9

Q ss_pred             cceeEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCccccHHHHHHHHHhh
Q 003517          622 VSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSI  701 (813)
Q Consensus       622 ~~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~  701 (813)
                      ...||+|...|+|..+..+..|.|||..-++.++++++.+++....               ..+..+++. +.+ ++.++
T Consensus       249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~---------------~~~~~~~l~-~~~-~lA~~  311 (895)
T PRK10490        249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRL---------------PEKKRRAIL-SAL-RLAQE  311 (895)
T ss_pred             cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcC---------------CHHHHHHHH-HHH-HHHHH
Confidence            3468999999999999999999999999999999999975432110               011111121 222 23333


Q ss_pred             hccCCCCeEEEEEEecChHHHHHHHhccCCCcEEEEccCCCCCCCCCCccccccCccccchhhhhcCCCCCcccEEEE
Q 003517          702 ASKNQESITLEERLVESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVL  779 (813)
Q Consensus       702 ~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~~DLviVGr~~~~~gl~~w~~~e~~~eLG~igd~las~d~~~~~SvLvv  779 (813)
                      .  +   ..+....-+|..+++.......+.+.+|+|+++ ..+.  |       --|-+-|-|....  ...-|.||
T Consensus       312 l--G---a~~~~~~~~dva~~i~~~A~~~~vt~IViG~s~-~~~~--~-------~~~s~~~~l~r~~--~~idi~iv  372 (895)
T PRK10490        312 L--G---AETATLSDPAEEKAVLRYAREHNLGKIIIGRRA-SRRW--W-------RRESFADRLARLG--PDLDLVIV  372 (895)
T ss_pred             c--C---CEEEEEeCCCHHHHHHHHHHHhCCCEEEECCCC-CCCC--c-------cCCCHHHHHHHhC--CCCCEEEE
Confidence            2  2   223444456677666665555559999999997 4332  3       1356778777543  45678888

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments

Probab=85.86  E-value=8.6  Score=38.67  Aligned_cols=49  Identities=22%  Similarity=0.348  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHH
Q 003517          347 LLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLN  395 (813)
Q Consensus       347 ~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~  395 (813)
                      ...+-+..+++-++++++.+++.++|++|++.+|..++.-..-+..+..
T Consensus        58 ~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~GwYSlsg~~i~~  106 (191)
T PF03956_consen   58 ALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGWYSLSGVLITQ  106 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence            4455566678899999999999999999999999888777665555443

Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]

Probab=85.40  E-value=4.2  Score=48.80  Aligned_cols=125  Identities=16%  Similarity=0.164  Sum_probs=79.1

Q ss_pred             CccceeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHH
Q 003517          450 ETEFRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFE  529 (813)
Q Consensus       450 ~~elriLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~  529 (813)
                      ...-|||||+....+...+++-+.-++..  .....+++|+..-..+..+.                  .+.+++...++
T Consensus       246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~--~~a~~~av~v~~~~~~~~~~------------------~~~~~l~~~~~  305 (890)
T COG2205         246 AARERILVCISGSPGSEKLIRRAARLASR--LHAKWTAVYVETPELHRLSE------------------KEARRLHENLR  305 (890)
T ss_pred             cccceEEEEECCCCchHHHHHHHHHHHHH--hCCCeEEEEEeccccccccH------------------HHHHHHHHHHH
Confidence            44579999999999989999887777654  45557888875422111110                  22334444444


Q ss_pred             HhhhcCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCC-CceEE
Q 003517          530 AYQQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAP-CSVGI  605 (813)
Q Consensus       530 ~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~ap-CsVgI  605 (813)
                      --++.+. .+.  +..+  .++.+.|.+.|+++++.-||+|=+++.++...+.      +.+.+++++++| -+|-|
T Consensus       306 Lae~lGa-e~~--~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~------~~l~~~L~~~~~~idv~i  371 (890)
T COG2205         306 LAEELGA-EIV--TLYG--GDVAKAIARYAREHNATKIVIGRSRRSRWRRLFK------GSLADRLAREAPGIDVHI  371 (890)
T ss_pred             HHHHhCC-eEE--EEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhc------ccHHHHHHhcCCCceEEE
Confidence            3344433 111  1222  6899999999999999999999887665542221      345668888877 34433

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]

Probab=84.95  E-value=5.7  Score=42.12  Aligned_cols=131  Identities=11%  Similarity=0.206  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCC-c--hHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhh
Q 003517          267 VCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGP-F--AGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATS  343 (813)
Q Consensus       267 ~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~-~--~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~  343 (813)
                      ...-+..+|+.+.+++.+.++|..|-.++|.+.....| +  .+.+...+..+.    .-+....+|+++.+.++..-+.
T Consensus        11 iv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelG----ViLLmFgvGLhfslkdLLavk~   86 (408)
T COG4651          11 IVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELG----VILLMFGVGLHFSLKDLLAVKA   86 (408)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhh----HHHHHHhcchheeHHHHhhHHH
Confidence            45567788888999999999999999999999863333 2  345555666653    2234467899998887765444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCh
Q 003517          344 WGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLND  405 (813)
Q Consensus       344 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~  405 (813)
                      |.+-..+.-++  .-..-.+..++..|+++...+..|+.++....+  ++.....+++.++.
T Consensus        87 iAipgAl~qia--~at~lg~gL~~~lgws~~~glvfGlaLS~aSTV--vllraLqEr~lidt  144 (408)
T COG4651          87 IAIPGALAQIA--LATLLGMGLSSLLGWSFGTGIVFGLALSVASTV--VLLRALEERQLIDT  144 (408)
T ss_pred             HhcchHHHHHH--HHHHHHhHHHHHcCCCcccceeeeehhhhHHHH--HHHHHHHHhccccc
Confidence            43222111111  111122345677889999999999988877654  33333334455543

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=84.56  E-value=10  Score=41.52  Aligned_cols=102  Identities=18%  Similarity=0.169  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCh--hHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 003517           39 LQICLVVAFTRFLAFLLKPLRQPR--VIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLEL  116 (813)
Q Consensus        39 ~~i~lil~~~~~~~~l~~~l~~P~--ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~  116 (813)
                      .++.+++.++.+.+++++++|+|.  ++|-++++.++.-....  +    .-.|    .   .+..++.+++--.+|.++
T Consensus       155 ~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~--~----~~~P----~---~l~~~aqv~iG~~iG~~f  221 (318)
T PF05145_consen  155 LWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGP--S----FSLP----P---WLVNAAQVLIGASIGSRF  221 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCC--C----CCCC----H---HHHHHHHHHHHHHHHccc
Confidence            345666677888999999999875  56666666655532111  1    1112    2   355556666667999999


Q ss_pred             ChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003517          117 DIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTV  154 (813)
Q Consensus       117 d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~  154 (813)
                      +.+.+++..| .+..++...++-++++.++++.+....
T Consensus       222 ~~~~l~~~~~-~~~~~l~~~~~~l~~~~~~a~~l~~~~  258 (318)
T PF05145_consen  222 TRETLRELRR-LLPPALLSTLLLLALCALFAWLLSRLT  258 (318)
T ss_pred             cHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999887654 444555555555566666666665443

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>PRK10711 hypothetical protein; Provisional

Probab=84.55  E-value=41  Score=34.81  Aligned_cols=83  Identities=11%  Similarity=0.161  Sum_probs=50.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHhH
Q 003517          343 SWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFIT  422 (813)
Q Consensus       343 ~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~  422 (813)
                      .|..+.+-+.++.+.-++.+++.++.++.+..-    -..|.+|....=+...+..+.|-+.+-.-...+++-++-.++.
T Consensus        87 ~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~----~~Sl~pkSVTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g  162 (231)
T PRK10711         87 RWKSIISICFIGSVVAMVTGTAVALWMGATPEI----AASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFG  162 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH----HHHHhhhhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence            444444445556666677888889999886542    2336889987777777777776654433333334444444555


Q ss_pred             HHHHHHh
Q 003517          423 TPILMAI  429 (813)
Q Consensus       423 ~plv~~l  429 (813)
                      +++.+++
T Consensus       163 ~~llk~~  169 (231)
T PRK10711        163 HTLLNAM  169 (231)
T ss_pred             HHHHHHc
Confidence            5555543

>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins

Probab=83.99  E-value=3.4  Score=44.42  Aligned_cols=110  Identities=23%  Similarity=0.318  Sum_probs=67.0

Q ss_pred             HHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhh
Q 003517          318 SGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIG  397 (813)
Q Consensus       318 ~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~  397 (813)
                      ++++=|+-|..+|..+|+..+... .+.  .++-..+-++ ...++..+..+|++.+|+..+|.+=+.-|-.++.+.+..
T Consensus        68 ~~l~P~LIF~GIGAmtDFgpllan-P~~--~llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~L  143 (360)
T PF03977_consen   68 NGLFPPLIFMGIGAMTDFGPLLAN-PKT--LLLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSKL  143 (360)
T ss_pred             cchhhHHHHHHHhHHHhhHHHHhC-HHH--HHHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHhh
Confidence            578888889999999999876542 221  2222223333 345677778889999999999987566666665544332


Q ss_pred             c-c-cCCCChHHHHHHHHHHHHHHHhHHHHHHHhhccccc
Q 003517          398 K-D-RKVLNDQAFAILVLMALFTTFITTPILMAIYKPARK  435 (813)
Q Consensus       398 ~-~-~~~i~~~~~~~lvl~~vv~t~i~~plv~~l~~~~~~  435 (813)
                      . + .+.+.-..|+-|    -+.-.+-||+++.+-.+++|
T Consensus       144 Ap~LlgpIaVaAYsYM----aLvPiiqPpimklLttkkeR  179 (360)
T PF03977_consen  144 APHLLGPIAVAAYSYM----ALVPIIQPPIMKLLTTKKER  179 (360)
T ss_pred             hHHHHHHHHHHHHHHH----HHHhhhhhHHHHHhcCHHHH
Confidence            1 1 012222223322    23356678888887765444

The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]

Probab=83.64  E-value=27  Score=39.85  Aligned_cols=71  Identities=25%  Similarity=0.447  Sum_probs=49.7

Q ss_pred             HhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHhhhhHHHH
Q 003517          319 GLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSC--KVPLRESLALGFIMNTKGLVEL  391 (813)
Q Consensus       319 ~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~--~~~~re~~~lgl~l~~kG~v~l  391 (813)
                      .+++|+-....|+++|...+..  .|..+..+.....+...++......+.  ++|+..++.+|.++++-.-+.+
T Consensus        64 ~l~l~ilLf~~g~~l~~~~l~~--~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v  136 (429)
T COG0025          64 VLFLAILLFAGGLELDLRELRR--VWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAV  136 (429)
T ss_pred             HHHHHHHHHHhHhcCCHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhh
Confidence            6677777778899999998876  444444444444555555555555554  8899999999998888775543

>TIGR00659 conserved hypothetical protein TIGR00659

Probab=83.46  E-value=58  Score=33.58  Aligned_cols=83  Identities=12%  Similarity=0.159  Sum_probs=49.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHhH
Q 003517          343 SWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFIT  422 (813)
Q Consensus       343 ~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~  422 (813)
                      .|..+...+.++.+.-+..+++.++.+|.+..  ...  .+.+|....-+...+..+.|-..+-.-...+++-++...+.
T Consensus        86 ~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~--i~~--Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g  161 (226)
T TIGR00659        86 YWKEIILNVAVGSVIAIISGTLLALLLGLGPE--IIA--SLLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFG  161 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HHH--HhhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            34444444445555566777888899998733  333  46899987767777777776654333333444444445555


Q ss_pred             HHHHHHh
Q 003517          423 TPILMAI  429 (813)
Q Consensus       423 ~plv~~l  429 (813)
                      +++.+++
T Consensus       162 ~~ll~~~  168 (226)
T TIGR00659       162 PMVLRYF  168 (226)
T ss_pred             HHHHHHc
Confidence            5555543

Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=83.46  E-value=10  Score=40.92  Aligned_cols=75  Identities=15%  Similarity=0.250  Sum_probs=53.2

Q ss_pred             hHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHH
Q 003517           63 VIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFAL  142 (813)
Q Consensus        63 ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~  142 (813)
                      .+--++.|+++|...-+ .+            +.++.-..+++.++.|..|.++|++.+.+.+...+.+++..+.+++.+
T Consensus       169 lilpILiGmilGNld~~-~~------------~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~  235 (312)
T PRK12460        169 ALLPLVLGMILGNLDPD-MR------------KFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFF  235 (312)
T ss_pred             HHHHHHHHHHHhccchh-hH------------HHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            44557778888862111 11            222222334888899999999999999999999999999888888777


Q ss_pred             HHHHHHHH
Q 003517          143 GIGTSFVL  150 (813)
Q Consensus       143 ~~~~~~~l  150 (813)
                      ++.+..++
T Consensus       236 ~~~i~rll  243 (312)
T PRK12460        236 NIFADRLV  243 (312)
T ss_pred             HHHHHHHh
Confidence            76666544

>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit

Probab=82.65  E-value=20  Score=39.28  Aligned_cols=112  Identities=20%  Similarity=0.239  Sum_probs=67.3

Q ss_pred             HHHHhhHHHHHHHhccccchhhhhchhhHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHH
Q 003517          316 MVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLV-ILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVL  394 (813)
Q Consensus       316 ~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~i-i~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~  394 (813)
                      +.++++=|+-|..+|..+|+..+.... +  ..++ -..+-+|- ..+++.+..+|++.+|+-.+|.+=+.-|-.++.+.
T Consensus       102 i~~gl~P~LIFlGIGAMtDFgpllanP-~--~~ll~gaaAQ~Gi-F~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s  177 (399)
T TIGR03136       102 FSNSLVACILFFGIGAMSDISFILARP-W--ASITVALFAEMGT-FATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFAS  177 (399)
T ss_pred             HhcccHHHHHHHhccHHhcchHHHhCh-H--HHHHHHHHHHhhH-HHHHHHHHHcCCCHHHhhHHhhcccCCccHHHHHH
Confidence            345788888999999999998765422 2  1111 12333332 34566677889999999999987566666665544


Q ss_pred             Hhhc-c-cCCCChHHHHHHHHHHHHHHHhHHHHHHHhhccccc
Q 003517          395 NIGK-D-RKVLNDQAFAILVLMALFTTFITTPILMAIYKPARK  435 (813)
Q Consensus       395 ~~~~-~-~~~i~~~~~~~lvl~~vv~t~i~~plv~~l~~~~~~  435 (813)
                      +... + .+.+.-..|+-|    -+.-.+-||+++.+-.+++|
T Consensus       178 ~kLAp~Llg~IaVAAYsYM----aLVPiiqPpimklLttkkER  216 (399)
T TIGR03136       178 LILAKDLFVPISIIAYLYL----SLTYAGYPYLIKLLVPKKYR  216 (399)
T ss_pred             HhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhhcCHHHH
Confidence            3321 1 122222223332    23356678898887765444

Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.

>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain

Probab=82.37  E-value=6.7  Score=39.10  Aligned_cols=37  Identities=19%  Similarity=0.314  Sum_probs=32.5

Q ss_pred             eEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeec
Q 003517          625 SVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVA  661 (813)
Q Consensus       625 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~  661 (813)
                      +|++.+.||.|+--++.++.+.++..+.++.++++..
T Consensus         1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~   37 (189)
T TIGR02432         1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDH   37 (189)
T ss_pred             CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            5889999999999999999998877778889998853

The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]

Probab=82.03  E-value=0.42  Score=53.60  Aligned_cols=112  Identities=18%  Similarity=0.319  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCch--HHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHH
Q 003517          272 SMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFA--GVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLL  349 (813)
Q Consensus       272 ~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~--~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~  349 (813)
                      +.+++...+.+.++++..+|-.++|+++... .+.  +......+.+ ..+.+++.....|.++|...+..  .+.....
T Consensus         6 ~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~-~~~~~~~~~~~~~~l-~~i~l~~llF~~G~~~d~~~l~~--~~~~~~~   81 (380)
T PF00999_consen    6 LLAFVAGILFRRLGIPSIIGYILVGIVLGPS-GLGLLEPDNPSFELL-AEIGLAFLLFEAGLELDIKELRR--NWRRALA   81 (380)
T ss_dssp             -------------------------------------------S-SS-HHHHS--SSHHHHTTGGGG-------------
T ss_pred             ehHHHHHHHHHHhCCCHHHHHHHheeehhhh-hhhhccchhhHHHHH-HHHHHHHHHHHHHHhhccccccc--ccccccc
Confidence            3344445578889999999999999999752 222  1112445555 67788888889999999998876  3333333


Q ss_pred             HHHHHHHHHHHH-HHHHHH---hcCCChHHHHHHHHHHhhhh
Q 003517          350 VILNACFGKIVG-TVVVAW---SCKVPLRESLALGFIMNTKG  387 (813)
Q Consensus       350 ii~~~~~~K~~~-~~l~~~---~~~~~~re~~~lgl~l~~kG  387 (813)
                      ..+..++.-++. ++....   ..++++.+++.+|..+++-.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts  123 (380)
T PF00999_consen   82 LGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATS  123 (380)
T ss_dssp             --------------------------------TTHHHHTT--
T ss_pred             cccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence            333333334443 444443   47889999999988876554

These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]

Probab=80.08  E-value=46  Score=36.98  Aligned_cols=116  Identities=13%  Similarity=0.099  Sum_probs=69.5

Q ss_pred             HHhhHHHHHHHhccccchhhhhchhh-HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH-HH-hhhhHHHHHHH
Q 003517          318 SGLFLPLYFAASGLKTNVATIRGATS-WGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGF-IM-NTKGLVELIVL  394 (813)
Q Consensus       318 ~~~~~plFF~~~G~~~dl~~l~~~~~-~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl-~l-~~kG~v~l~~~  394 (813)
                      .+.|+-+||..+|+.-++..+..+.. ............+..-......+.+.+.++.-++..|- .| +..|. +.+..
T Consensus        68 ~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGt-aAA~~  146 (404)
T COG0786          68 QDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGT-AAAWG  146 (404)
T ss_pred             ccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCch-HHHHH
Confidence            67889999999999999988865321 11111111122233444455667778887776665532 22 33444 44666


Q ss_pred             HhhcccCCCChHHHHHH--HHHHHHHHHhHHHHHHHhhcccc
Q 003517          395 NIGKDRKVLNDQAFAIL--VLMALFTTFITTPILMAIYKPAR  434 (813)
Q Consensus       395 ~~~~~~~~i~~~~~~~l--vl~~vv~t~i~~plv~~l~~~~~  434 (813)
                      ....+.|.-+.....+.  .+-.+.-.++.+|+.+|+.++.+
T Consensus       147 ~~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~li~k~~  188 (404)
T COG0786         147 PTFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWLIKKNK  188 (404)
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHHHHhcC
Confidence            77777777665443332  23344445677899999886543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	813
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 1e-07
 Identities = 67/411 (16%), Positives = 119/411 (28%), Gaps = 89/411 (21%)

Query: 420 FITTPILMAIYKPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIP--SLINLVESSRG 477
           F+ +PI     +P+     Y     QR     + ++ A ++ +R  P   L   +   R 
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIE---QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 478 RKR---------GKLCLYAMHLMELSERSSAIAMVQKARNNGLPFW-DKKRDDRDYIVIA 527
            K          GK  +           S     VQ   +  + FW + K  +    V+ 
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVC-----LSYK---VQCKMDFKI-FWLNLKNCNSPETVL- 199

Query: 528 FEAYQQLSSVTVRPMTA-ISALSSIHEDICASAHRKRAALILLPFHKHQR----LDGAME 582
            E  Q+L        T+     S+I   I +     R    LL    ++     L     
Sbjct: 200 -EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR---RLLKSKPYENCLLVLL---- 251

Query: 583 SLGHTFHLVNRRALQH--APCSVGIFVDRGLGGTTQVVASEVSYSVVVPFFGGLDDCEAL 640
                 ++ N +A       C + +   R    T  + A+  ++  +      L   E  
Sbjct: 252 ------NVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 641 AY-----GMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDN-DQVGDDAI 694
           +        R  + P      V    P+  S+         I   L   DN   V  D +
Sbjct: 305 SLLLKYLDCRPQDLP----REVLTTNPRRLSI-IAE----SIRDGLATWDNWKHVNCDKL 355

Query: 695 ISDFK-SIASKNQESITLEERLVESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMD--TKS 751
            +  + S+     E     +                   ++F      PT  L       
Sbjct: 356 TTIIESSL--NVLEPAEYRKMFDR--------------LSVFPPSAHIPTILLSLIWFDV 399

Query: 752 AEYCSELGPVGCFLASSEFSTTASVVVLQQYNPTLNLHPLVEEEESDDANE 802
            +    +  V   L         S+V  Q    T+++  +  E +    NE
Sbjct: 400 IKSDVMV--VVNKLHKY------SLVEKQPKESTISIPSIYLELKVKLENE 442

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 4e-06
 Identities = 48/368 (13%), Positives = 103/368 (27%), Gaps = 110/368 (29%)

Query: 243 FVIRPVLSLMARRSPEGEPVKEL----YVCITLSM------VLAASFVTD-TIGIHALFG 291
            V R    L  R++     + EL     V I   +       +A        +     F 
Sbjct: 130 NVSRLQPYLKLRQA-----LLELRPAKNVLID-GVLGSGKTWVALDVCLSYKVQCKMDFK 183

Query: 292 AFVVGIIMPKEGPFAGVLIEKIEDM---VSGLFLPLYFAASGLKTNVATIRGATSWGLL- 347
            F + +           ++E ++ +   +   +      +S +K  + +I+      LL 
Sbjct: 184 IFWLNLKNCNS---PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-RLLK 239

Query: 348 -------LLV--------ILNA----CFGKI--------VGTVVVAWSCKVPLRESLALG 380
                  LLV          NA    C  KI        V   + A +      +  ++ 
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSC--KILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 381 FIMNTKG-LVELIVLNIGKDRKVLNDQAFAI--LVLMALFTTFITTPILMAIYKPARKGV 437
               T   +  L++  +    + L  +        L ++    I   +            
Sbjct: 298 L---TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-SIIAESIRDGLATWDN------- 346

Query: 438 PYKH-------RTIQR-------KDTETEFRILACFHSTRNIPS---------------- 467
            +KH         I+         +    F  L+ F  + +IP+                
Sbjct: 347 -WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405

Query: 468 --LINLVESS---RGRKRGKLCLYAMHLMELSERSSAIAMVQKARNN-----GLPFWDKK 517
             +  L + S   +  K   + + +++L    +  +  A+ +   ++          D  
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 518 RDDRD-YI 524
               D Y 
Sbjct: 466 PPYLDQYF 473

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 7e-04
 Identities = 60/378 (15%), Positives = 123/378 (32%), Gaps = 105/378 (27%)

Query: 439 YKHRTIQRKDTETEF-RILACFH---STRNIPS---LINLVESSRGRKRGKLCLYAMHLM 491
           Y+++ I     E  F     C       ++I S   + +++ S           + +   
Sbjct: 16  YQYKDIL-SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL--- 71

Query: 492 ELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEA-YQQLSSVTVRPMTAISALSS 550
            LS++     MVQK     L      R +  +++   +   +Q S +T      I     
Sbjct: 72  -LSKQEE---MVQKFVEEVL------RINYKFLMSPIKTEQRQPSMMTRM---YIEQRDR 118

Query: 551 IHEDICASAHRKRAALILLPFHKHQ--RLDGAMESLGHTFHLVNRRALQHAPCSVGIFVD 608
           ++ D                F K+   RL      L        R+AL     +  + +D
Sbjct: 119 LYNDN-------------QVFAKYNVSRLQ-PYLKL--------RQALLELRPAKNVLID 156

Query: 609 RGLGGT-TQVVASEV--SYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGT 665
            G+ G+    VA +V  SY V             + +                       
Sbjct: 157 -GVLGSGKTWVALDVCLSYKVQCKMDFK------IFW----------------------- 186

Query: 666 SLTFGS-DAPGVISIDLLRGDNDQVGDDAIISDFKSIASKNQESITLEERLVESSQEIAG 724
            L   + ++P  + +++L+    Q+          +  S++  S  ++ R+     E+  
Sbjct: 187 -LNLKNCNSPETV-LEMLQKLLYQID--------PNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 725 VLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGC--FLASSEFSTTASVVVLQQY 782
           +LKS    N  LV        L++ ++A+  +    + C   L +     T  +      
Sbjct: 237 LLKSKPYENCLLV--------LLNVQNAKAWNAFN-LSCKILLTTRFKQVTDFLSAATTT 287

Query: 783 NPTLNLHPLV-EEEESDD 799
           + +L+ H +    +E   
Sbjct: 288 HISLDHHSMTLTPDEVKS 305

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	813
d1mjha_	160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	99.12
d2z3va1	135	Hypothetical protein TTHA0895 {Thermus thermophilu	98.95
d1mjha_	160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	98.85
d2gm3a1	171	Putative ethylene-responsive protein AT3g01520/F4P	98.71
d1jmva_	140	Universal stress protein A, UspA {Haemophilus infl	98.7
d2z3va1	135	Hypothetical protein TTHA0895 {Thermus thermophilu	98.68
d1tq8a_	147	Hypothetical protein Rv1636 {Mycobacterium tubercu	98.67
d1tq8a_	147	Hypothetical protein Rv1636 {Mycobacterium tubercu	98.6
d1jmva_	140	Universal stress protein A, UspA {Haemophilus infl	98.43
d1q77a_	138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	98.37
d1q77a_	138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	98.32
d2gm3a1	171	Putative ethylene-responsive protein AT3g01520/F4P	98.25

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.12  E-value=7.8e-10  Score=91.96  Aligned_cols=146  Identities=12%  Similarity=0.107  Sum_probs=97.0

Q ss_pred             CEEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCC-CCCCC--------CCCCHH
Q ss_conf             325788514898122799997421688998237899953126751378999987408999-88778--------885028
Q 003517          453 FRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLP-FWDKK--------RDDRDY  523 (813)
Q Consensus       453 lriLv~i~~~~~~~~~l~l~~~~~~~~~~~~~i~~lhlvel~~r~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~  523 (813)
                      -|||+|+|+++.+..+++.+..++  +..+.+++++|+++.................... .....        ....++
T Consensus         4 ~~ILvavD~s~~s~~al~~a~~la--~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (160)
T d1mjha_           4 KKILYPTDFSETAEIALKHVKAFK--TLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN   81 (160)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHTC--CSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHH--HHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             829999879989999999999998--753997999983056654433332222453322200788999999999999999


Q ss_pred             HHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCE
Q ss_conf             99999986315825998647641698758989999872387699943776554578633446021899998730189954
Q 003517          524 IVIAFEAYQQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSV  603 (813)
Q Consensus       524 i~~af~~~~~~~~v~v~~~~~vsp~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~apCsV  603 (813)
                      .++.+..-.+..++.++......   ...+.||+.|++.++||||||.|++....+.+      +|++.++|++++||||
T Consensus        82 ~l~~~~~~~~~~gv~~~~~~~~G---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~GS~a~~vl~~s~~pV  152 (160)
T d1mjha_          82 KMENIKKELEDVGFKVKDIIVVG---IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEIL------LGSVTENVIKKSNKPV  152 (160)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCS------SCHHHHHHHHHCCSCE
T ss_pred             HHHHHHHHHHHCCCEEEEEEEEC---CHHHHHHHHHHCCCCCEEEECCCCCCCCCCCC------CCCHHHHHHHCCCCCE
T ss_conf             99999999876597699999945---58987766520242214776168998642141------0709999996299989


Q ss_pred             EEEECC
Q ss_conf             998559
Q 003517          604 GIFVDR  609 (813)
Q Consensus       604 ~Ilvdr  609 (813)
                      .|+..+
T Consensus       153 lvV~~~  158 (160)
T d1mjha_         153 LVVKRK  158 (160)
T ss_dssp             EEECCC
T ss_pred             EEECCC
T ss_conf             998289

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein TTHA0895
species: Thermus thermophilus [TaxId: 274]

Probab=98.95  E-value=1e-09  Score=90.95  Aligned_cols=133  Identities=16%  Similarity=0.164  Sum_probs=85.2

Q ss_pred             EEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             25788514898122799997421688998237899953126751378999987408999887788850289999998631
Q 003517          454 RILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQ  533 (813)
Q Consensus       454 riLv~i~~~~~~~~~l~l~~~~~~~~~~~~~i~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~  533 (813)
                      +||+|+|+++.+..+++.+..++.  ..+.+++++|+++.+.............+          ...++....++++.+
T Consensus         3 ~Ilv~~D~s~~s~~a~~~a~~~a~--~~~~~l~ll~V~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~   70 (135)
T d2z3va1           3 TILLAYDGSEHARRAAEVAKAEAE--AHGARLIVVHAYEPVPDYLGEPFFEEALR----------RRLERAEGVLEEARA   70 (135)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHHH--HHTCEEEEEEEECCCCTTCCTTHHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHH--HCCCEEEEEEEECCCCCCCCCCHHHHHHH----------HHHHHHHHHHHHHHH
T ss_conf             899997899899999999999999--83999999997457754346502689999----------999999999999998


Q ss_pred             CCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEE
Q ss_conf             5825998647641698758989999872387699943776554578633446021899998730189954998
Q 003517          534 LSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIF  606 (813)
Q Consensus       534 ~~~v~v~~~~~vsp~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~apCsV~Il  606 (813)
                      ..++.......  ..++..+.||+.|+++++||||||+|++.+..+.+      +|++.+++++++||||.++
T Consensus        71 ~~~~~~~~~~~--~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~ll~~~~~pVlvV  135 (135)
T d2z3va1          71 LTGVPKEDALL--LEGVPAEAILQAARAEKADLIVMGTRGLGALGSLF------LGSQSQRVVAEAPCPVLLV  135 (135)
T ss_dssp             HHCCCGGGEEE--EESCHHHHHHHHHHHTTCSEEEEESSCSSSCBCSS------CBHHHHHHHHHCSSCEEEE
T ss_pred             HCCCCEEEEEE--ECCCHHHHHHHHHHHHHEEEEEECCCCCCCCCCCC------CCCHHHHHHHHCCCCEEEC
T ss_conf             66997289999--82776899998752000115775367998521041------3709999997099999959

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.85  E-value=2.9e-08  Score=79.42  Aligned_cols=147  Identities=11%  Similarity=0.095  Sum_probs=95.1

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCC-CCCCCCCCCCCCCCC-------CCCHHHH
Q ss_conf             21699816799073999999999730899399999952499987556899-998420034679874-------0108999
Q 003517          623 SYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSD-APGVISIDLLRGDND-------QVGDDAI  694 (813)
Q Consensus       623 ~~~I~v~f~Gg~ddreAL~~a~rma~~~~v~ltvir~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~d~~~  694 (813)
                      ++||+++.+|++.++.|+.+|..+|+..+++|+++|+.++.......... ..+.........+.+       .+..++.
T Consensus         3 ~~~ILvavD~s~~s~~al~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (160)
T d1mjha_           3 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK   82 (160)
T ss_dssp             CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             68299998799899999999999987539979999830566544333322224533222007889999999999999999


Q ss_pred             HHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHCCCC--CCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC
Q ss_conf             9999853014899859999991695889999730379--86799845799999988765335675431102131479997
Q 003517          695 ISDFKSIASKNQESITLEERLVESSQEIAGVLKSMNK--CNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFST  772 (813)
Q Consensus       695 l~~~~~~~~~~~~~v~~~e~~v~~~~~~~~~l~~~~~--~DLiivGr~~~~~GL~~w~~~e~~~eLG~igd~las~d~~~  772 (813)
                      ++++..+.  ....+.++.++. .|.....+++.+.+  +||+|||+|+ +.++.+|       -+|...+.+++.   +
T Consensus        83 l~~~~~~~--~~~gv~~~~~~~-~G~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~-------~~GS~a~~vl~~---s  148 (160)
T d1mjha_          83 MENIKKEL--EDVGFKVKDIIV-VGIPHEEIVKIAEDEGVDIIIMGSHG-KTNLKEI-------LLGSVTENVIKK---S  148 (160)
T ss_dssp             HHHHHHHH--HHTTCEEEEEEE-EECHHHHHHHHHHHTTCSEEEEESCC-SSCCTTC-------SSCHHHHHHHHH---C
T ss_pred             HHHHHHHH--HHCCCEEEEEEE-ECCHHHHHHHHHHCCCCCEEEECCCC-CCCCCCC-------CCCCHHHHHHHC---C
T ss_conf             99999998--765976999999-45589877665202422147761689-9864214-------107099999962---9


Q ss_pred             CCCEEEEEECC
Q ss_conf             31089996216
Q 003517          773 TASVVVLQQYN  783 (813)
Q Consensus       773 ~~svLvvqq~~  783 (813)
                      ++|||||+.+.
T Consensus       149 ~~pVlvV~~~~  159 (160)
T d1mjha_         149 NKPVLVVKRKN  159 (160)
T ss_dssp             CSCEEEECCCC
T ss_pred             CCCEEEECCCC
T ss_conf             99899982899

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.71  E-value=1.2e-08  Score=82.54  Aligned_cols=144  Identities=10%  Similarity=0.111  Sum_probs=90.6

Q ss_pred             CEEEEEEECCC---------CHHHHHHHHHH-HCCCCCCCCEEEEEEEEECCCCCHHHHH-----HHHHHHCCCCCCCCC
Q ss_conf             32578851489---------81227999974-2168899823789995312675137899-----998740899988778
Q 003517          453 FRILACFHSTR---------NIPSLINLVES-SRGRKRGKLCLYAMHLMELSERSSAIAM-----VQKARNNGLPFWDKK  517 (813)
Q Consensus       453 lriLv~i~~~~---------~~~~~l~l~~~-~~~~~~~~~~i~~lhlvel~~r~~~~~~-----~~~~~~~~~~~~~~~  517 (813)
                      -||++|+|+++         .+..++.-+-. ......+...++++|+.+..........     ....... ....   
T Consensus         2 ~ki~vavd~s~~~~~~~~~~~S~~Al~wal~~~~~~~~~~~~L~~vhv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---   77 (171)
T d2gm3a1           2 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDM-RQSN---   77 (171)
T ss_dssp             EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHH-TTSH---
T ss_pred             CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHH-HHHH---
T ss_conf             889999769856677899999999999999999877999728999995456543434444445677789999-9999---


Q ss_pred             CCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf             88502899999986315825998647641698758989999872387699943776554578633446021899998730
Q 003517          518 RDDRDYIVIAFEAYQQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQ  597 (813)
Q Consensus       518 ~~~~~~i~~af~~~~~~~~v~v~~~~~vsp~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~  597 (813)
                      ....+++++.+.......++.++..+..   +...+.||+.|++.++|+||||.|++.++.+.+      +|++.++|++
T Consensus        78 ~~~~~~~l~~~~~~~~~~~~~~~~~v~~---G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~------lGSv~~~vi~  148 (171)
T d2gm3a1          78 KAKGLHLLEFFVNKCHEIGVGCEAWIKT---GDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVF------VGTVSAFCVK  148 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCEEEEEEEE---SCHHHHHHHHHHHHCCSEEEEEECCCC--------------CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEEE---CCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC------CCCHHHHHHH
T ss_conf             9999999999999988639944799982---786999999876447757974367753545574------4869999983


Q ss_pred             CCCCCEEEEECC
Q ss_conf             189954998559
Q 003517          598 HAPCSVGIFVDR  609 (813)
Q Consensus       598 ~apCsV~Ilvdr  609 (813)
                      ++||||.++...
T Consensus       149 ~~~cpVlvV~~~  160 (171)
T d2gm3a1         149 HAECPVMTIKRN  160 (171)
T ss_dssp             HCSSCEEEEECC
T ss_pred             CCCCCEEEEECC
T ss_conf             899898999689

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Universal stress protein A, UspA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.70  E-value=2.9e-08  Score=79.33  Aligned_cols=133  Identities=9%  Similarity=0.038  Sum_probs=89.2

Q ss_pred             CEEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCHH----HHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf             32578851489812279999742168899823789995312675137----89999874089998877888502899999
Q 003517          453 FRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSA----IAMVQKARNNGLPFWDKKRDDRDYIVIAF  528 (813)
Q Consensus       453 lriLv~i~~~~~~~~~l~l~~~~~~~~~~~~~i~~lhlvel~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~af  528 (813)
                      -|||+|+|+++.+..++..+..++.  +.+..++++|+++.+....+    .. ....+.          ...++....+
T Consensus         3 k~ILv~vD~s~~s~~al~~A~~~a~--~~~~~v~~lhv~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~~~~   69 (140)
T d1jmva_           3 KHILVAVDLSEESPILLKKAVGIAK--RHDAKLSIIHVDVNFSDLYTGLIDVN-MSSMQD----------RISTETQKAL   69 (140)
T ss_dssp             SEEEEEECCSTTHHHHHHHHHHHHH--HHTCEEEEEEEEECCGGGCCCCEEHH-HHHHTT----------CCCCHHHHHH
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHH--HCCCEEEEEEEEEECCCCCCCCCCCC-HHHHHH----------HHHHHHHHHH
T ss_conf             7099998799899999999999998--74990999999640442212333223-589999----------9999999999


Q ss_pred             HHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             98631582599864764169875898999987238769994377655457863344602189999873018995499855
Q 003517          529 EAYQQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVD  608 (813)
Q Consensus       529 ~~~~~~~~v~v~~~~~vsp~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~apCsV~Ilvd  608 (813)
                      +......+.........  .++..+.|++.|++.++|+||||.|+++..         .++++.++++++++|||.++..
T Consensus        70 ~~~~~~~~~~~~~~~~~--~~~~~~~I~~~a~~~~~dliV~G~~~~~~~---------~lgs~~~~li~~~~~pVliVp~  138 (140)
T d1jmva_          70 LDLAESVDYPISEKLSG--SGDLGQVLSDAIEQYDVDLLVTGHHQDFWS---------KLMSSTRQVMNTIKIDMLVVPL  138 (140)
T ss_dssp             HHHHHHSSSCCCCEEEE--EECHHHHHHHHHHHTTCCEEEEEECCCCHH---------HHHHHHHHHHTTCCSEEEEEEC
T ss_pred             HHHHHHCCCCEEEEEEE--ECCHHHHHHHHHHHCHHHEEEECCCCCCCC---------CCCCHHHHHHHCCCCCEEEEEC
T ss_conf             99998558861799998--168899999864003142888405899977---------7353999998616998999946


Q ss_pred             C
Q ss_conf             9
Q 003517          609 R  609 (813)
Q Consensus       609 r  609 (813)
                      +
T Consensus       139 ~  139 (140)
T d1jmva_         139 R  139 (140)
T ss_dssp             C
T ss_pred             C
T ss_conf             9

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein TTHA0895
species: Thermus thermophilus [TaxId: 274]

Probab=98.68  E-value=6.6e-09  Score=84.55  Aligned_cols=133  Identities=14%  Similarity=0.155  Sum_probs=90.2

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             21699816799073999999999730899399999952499987556899998420034679874010899999998530
Q 003517          623 SYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIA  702 (813)
Q Consensus       623 ~~~I~v~f~Gg~ddreAL~~a~rma~~~~v~ltvir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~  702 (813)
                      ++||++|.+|++.++.|+.+|.++|+..+++++++|+.++.....    ..  .. . ....+...+.-++.++++....
T Consensus         1 yk~Ilv~~D~s~~s~~a~~~a~~~a~~~~~~l~ll~V~~~~~~~~----~~--~~-~-~~~~~~~~~~~~~~l~~~~~~~   72 (135)
T d2z3va1           1 FKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYL----GE--PF-F-EEALRRRLERAEGVLEEARALT   72 (135)
T ss_dssp             CCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECCCCTTC----CT--TH-H-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCC----CC--CH-H-HHHHHHHHHHHHHHHHHHHHHC
T ss_conf             998999978998999999999999998399999999745775434----65--02-6-8999999999999999999866


Q ss_pred             CCCCCCEEEEEEEECCHHHHHHHHHCCCC--CCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEE
Q ss_conf             14899859999991695889999730379--867998457999999887653356754311021314799973108999
Q 003517          703 SKNQESITLEERLVESSQEIAGVLKSMNK--CNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVL  779 (813)
Q Consensus       703 ~~~~~~v~~~e~~v~~~~~~~~~l~~~~~--~DLiivGr~~~~~GL~~w~~~e~~~eLG~igd~las~d~~~~~svLvv  779 (813)
                        +.... -......+..+  .+++.+++  +||+|+|+|+ ++++.+|       -+|..++.+...   +++|||||
T Consensus        73 --~~~~~-~~~~~~g~~~~--~I~~~a~~~~~dliV~G~~~-~~~~~~~-------~~Gs~~~~ll~~---~~~pVlvV  135 (135)
T d2z3va1          73 --GVPKE-DALLLEGVPAE--AILQAARAEKADLIVMGTRG-LGALGSL-------FLGSQSQRVVAE---APCPVLLV  135 (135)
T ss_dssp             --CCCGG-GEEEEESCHHH--HHHHHHHHTTCSEEEEESSC-SSSCBCS-------SCBHHHHHHHHH---CSSCEEEE
T ss_pred             --CCCEE-EEEEECCCHHH--HHHHHHHHHHEEEEEECCCC-CCCCCCC-------CCCCHHHHHHHH---CCCCEEEC
T ss_conf             --99728-99998277689--99987520001157753679-9852104-------137099999970---99999959

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Rv1636
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.67  E-value=8.5e-08  Score=75.62  Aligned_cols=138  Identities=10%  Similarity=0.026  Sum_probs=84.1

Q ss_pred             CEEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             32578851489812279999742168899823789995312675137899998740899988778885028999999863
Q 003517          453 FRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQ  532 (813)
Q Consensus       453 lriLv~i~~~~~~~~~l~l~~~~~~~~~~~~~i~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~  532 (813)
                      -+||+|+|+++.+..++..+..++  +.....+++++..+......... .... .......   ....++.++.+....
T Consensus         6 k~ILv~vD~s~~s~~al~~A~~la--~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~---~~~~~~~l~~~~~~~   78 (147)
T d1tq8a_           6 KTVVVGTDGSDSSMRAVDRAAQIA--GADAKLIIASAYLPQHEDARAAD-ILKD-ESYKVTG---TAPIYEILHDAKERA   78 (147)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHH--TTTSEEEEEEECCC-------------------------CCTHHHHHHHHHHHH
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHH--HCCCCEEEEEEEECCCCCCCCCC-CCHH-HHHHHHH---HHHHHHHHHHHHHHH
T ss_conf             979999889989999999999998--61898799999943666543211-0002-4689999---999999999999999


Q ss_pred             HCCC-EEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEE
Q ss_conf             1582-5998647641698758989999872387699943776554578633446021899998730189954998
Q 003517          533 QLSS-VTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIF  606 (813)
Q Consensus       533 ~~~~-v~v~~~~~vsp~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~apCsV~Il  606 (813)
                      ...+ ..++..+.   .+...+.|++.|++.++||||+|.|++.+..+.+      +|++.++|++++||||.|+
T Consensus        79 ~~~~~~~~~~~~~---~G~~~~~i~~~a~~~~~dlIv~g~~~~~~~~~~l------~Gs~~~~ll~~~~~pVlvV  144 (147)
T d1tq8a_          79 HNAGAKNVEERPI---VGAPVDALVNLADEEKADLLVVGNVGLSTIAGRL------LGSVPANVSRRAKVDVLIV  144 (147)
T ss_dssp             HTTTCCEEEEEEE---CSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHH------TBBHHHHHHHHTTCEEEEE
T ss_pred             HHCCCCCEEEEEE---ECCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC------CCCHHHHHHHHCCCCEEEE
T ss_conf             8759973899998---4276999987642351369985578998633250------2649999997089988999

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Rv1636
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.60  E-value=7.8e-08  Score=75.95  Aligned_cols=141  Identities=14%  Similarity=0.131  Sum_probs=93.7

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             52169981679907399999999973089939999995249998755689999842003467987401089999999853
Q 003517          622 VSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSI  701 (813)
Q Consensus       622 ~~~~I~v~f~Gg~ddreAL~~a~rma~~~~v~ltvir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~  701 (813)
                      .++||+++.+|+++++.|+.+|.++|+..+..+++.++.++......  ....+.    ....+..++..++.+++++..
T Consensus         4 ~yk~ILv~vD~s~~s~~al~~A~~la~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~l~~~~~~   77 (147)
T d1tq8a_           4 AYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARA--ADILKD----ESYKVTGTAPIYEILHDAKER   77 (147)
T ss_dssp             CCCEEEEECCSSHHHHHHHHHHHHHHTTTSEEEEEEECCC--------------------------CCTHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC--CCCCHH----HHHHHHHHHHHHHHHHHHHHH
T ss_conf             78979999889989999999999998618987999999436665432--110002----468999999999999999999


Q ss_pred             HCCCCCCEEEEEEEECCHHHHHHHHHCCCC--CCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEE
Q ss_conf             014899859999991695889999730379--867998457999999887653356754311021314799973108999
Q 003517          702 ASKNQESITLEERLVESSQEIAGVLKSMNK--CNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVL  779 (813)
Q Consensus       702 ~~~~~~~v~~~e~~v~~~~~~~~~l~~~~~--~DLiivGr~~~~~GL~~w~~~e~~~eLG~igd~las~d~~~~~svLvv  779 (813)
                      . ...+.. ..+..+..|.....+++..++  +||+++|+++ ..++.++       -+|.+.+.++..   +++|||||
T Consensus        78 ~-~~~~~~-~~~~~~~~G~~~~~i~~~a~~~~~dlIv~g~~~-~~~~~~~-------l~Gs~~~~ll~~---~~~pVlvV  144 (147)
T d1tq8a_          78 A-HNAGAK-NVEERPIVGAPVDALVNLADEEKADLLVVGNVG-LSTIAGR-------LLGSVPANVSRR---AKVDVLIV  144 (147)
T ss_dssp             H-HTTTCC-EEEEEEECSSHHHHHHHHHHHTTCSEEEEECCC-CCSHHHH-------HTBBHHHHHHHH---TTCEEEEE
T ss_pred             H-HHCCCC-CEEEEEEECCHHHHHHHHHHCCCEEEEEECCCC-CCCCCCC-------CCCCHHHHHHHH---CCCCEEEE
T ss_conf             9-875997-389999842769999876423513699855789-9863325-------026499999970---89988999


Q ss_pred             EE
Q ss_conf             62
Q 003517          780 QQ  781 (813)
Q Consensus       780 qq  781 (813)
                      ..
T Consensus       145 ~~  146 (147)
T d1tq8a_         145 HT  146 (147)
T ss_dssp             CC
T ss_pred             EC
T ss_conf             46

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Universal stress protein A, UspA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.43  E-value=1e-06  Score=66.99  Aligned_cols=136  Identities=10%  Similarity=0.046  Sum_probs=88.4

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHH
Q ss_conf             2169981679907399999999973089939999995249998755689999842003-467987401089999999853
Q 003517          623 SYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISID-LLRGDNDQVGDDAIISDFKSI  701 (813)
Q Consensus       623 ~~~I~v~f~Gg~ddreAL~~a~rma~~~~v~ltvir~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~l~~~~~~  701 (813)
                      ++||+++.+|.+.++.|+.+|.++++..+.+++++|+.++.....      +...... ....+..++...+.+++...+
T Consensus         2 yk~ILv~vD~s~~s~~al~~A~~~a~~~~~~v~~lhv~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (140)
T d1jmva_           2 YKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLY------TGLIDVNMSSMQDRISTETQKALLDLAES   75 (140)
T ss_dssp             CSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGC------CCCEEHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCC------CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             870999987998999999999999987499099999964044221------23332235899999999999999999985


Q ss_pred             HCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEE
Q ss_conf             01489985999999169588999973037986799845799999988765335675431102131479997310899962
Q 003517          702 ASKNQESITLEERLVESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQQ  781 (813)
Q Consensus       702 ~~~~~~~v~~~e~~v~~~~~~~~~l~~~~~~DLiivGr~~~~~GL~~w~~~e~~~eLG~igd~las~d~~~~~svLvvqq  781 (813)
                      .  ...... ......+..+.+.....-.++||+|||+|+ ++    |   .   .||...+.+...   +++|||||..
T Consensus        76 ~--~~~~~~-~~~~~~~~~~~I~~~a~~~~~dliV~G~~~-~~----~---~---~lgs~~~~li~~---~~~pVliVp~  138 (140)
T d1jmva_          76 V--DYPISE-KLSGSGDLGQVLSDAIEQYDVDLLVTGHHQ-DF----W---S---KLMSSTRQVMNT---IKIDMLVVPL  138 (140)
T ss_dssp             S--SSCCCC-EEEEEECHHHHHHHHHHHTTCCEEEEEECC-CC----H---H---HHHHHHHHHHTT---CCSEEEEEEC
T ss_pred             C--CCCEEE-EEEEECCHHHHHHHHHHHCHHHEEEECCCC-CC----C---C---CCCCHHHHHHHC---CCCCEEEEEC
T ss_conf             5--886179-999816889999986400314288840589-99----7---7---735399999861---6998999946

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Aq 178
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.37  E-value=6.8e-07  Score=68.39  Aligned_cols=130  Identities=8%  Similarity=-0.052  Sum_probs=76.4

Q ss_pred             CEEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             32578851489812279999742168899823789995312675137899998740899988778885028999999863
Q 003517          453 FRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQ  532 (813)
Q Consensus       453 lriLv~i~~~~~~~~~l~l~~~~~~~~~~~~~i~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~  532 (813)
                      -+||+|+|+++.+..++..+..++  ++.+++++++|+++............  .........  .+..++..+.++++.
T Consensus         5 k~ILv~~D~S~~s~~al~~A~~~a--~~~~a~l~llhv~~~~~~~~~~~~~~--~~~~~~~~~--e~~~~~~~~~l~~~~   78 (138)
T d1q77a_           5 KVLLVLTDAYSDCEKAITYAVNFS--EKLGAELDILAVLEDVYNLERANVTF--GLPFPPEIK--EESKKRIERRLREVW   78 (138)
T ss_dssp             EEEEEEESTTCCCHHHHHHHHHHH--TTTCCEEEEEEECHHHHHHHHHHHHH--CCCCCTHHH--HHHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCHHHHHHHHHHHHHH--HHCCCEEEEEEECCCCCCCCCCCCCC--CCCHHHHHH--HHHHHHCCCCCHHHC
T ss_conf             999999959999999999999965--44054389999736743332102332--221013456--565431112002220


Q ss_pred             ---HCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEE
Q ss_conf             ---15825998647641698758989999872387699943776554578633446021899998730189954998
Q 003517          533 ---QLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIF  606 (813)
Q Consensus       533 ---~~~~v~v~~~~~vsp~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~apCsV~Il  606 (813)
                         +..+..++..+.   .+...+.|++.|++.++||||||+|++..               -++++..+.||++|.
T Consensus        79 ~~~~~~~~~~~~~v~---~G~~~~~I~~~a~~~~~DLIV~Gs~g~~~---------------l~r~l~g~~~~~liv  137 (138)
T d1q77a_          79 EKLTGSTEIPGVEYR---IGPLSEEVKKFVEGKGYELVVWACYPSAY---------------LCKVIDGLNLASLIV  137 (138)
T ss_dssp             HHHHSCCCCCCEEEE---CSCHHHHHHHHHTTSCCSEEEECSCCGGG---------------THHHHHHSSSEEEEC
T ss_pred             CCCCCCCEEEEEEEE---CCHHHHHHHHHHHHCCCCEEEEECCCCCH---------------HHHHHCCCCCCEEEE
T ss_conf             112223214798640---23047888876664269999995699767---------------899855999887986

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Aq 178
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.32  E-value=4.8e-07  Score=69.62  Aligned_cols=133  Identities=13%  Similarity=0.059  Sum_probs=76.8

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             65216998167990739999999997308993999999524999875--5689999842003467987401089999999
Q 003517          621 EVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSL--TFGSDAPGVISIDLLRGDNDQVGDDAIISDF  698 (813)
Q Consensus       621 ~~~~~I~v~f~Gg~ddreAL~~a~rma~~~~v~ltvir~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~  698 (813)
                      ...++|+++.||+++.+.|+.+|.++|+..+++++++|++.+.....  ......+.....    .+..++..++.++++
T Consensus         2 ~~mk~ILv~~D~S~~s~~al~~A~~~a~~~~a~l~llhv~~~~~~~~~~~~~~~~~~~~~~----~e~~~~~~~~~l~~~   77 (138)
T d1q77a_           2 NAMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEI----KEESKKRIERRLREV   77 (138)
T ss_dssp             CCCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHH----HHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHH----HHHHHHHCCCCCHHH
T ss_conf             8789999999599999999999999654405438999973674333210233222101345----656543111200222


Q ss_pred             HHHHCCCCCCEEEEEEEECCHHHHHHHHHCCCC--CCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCE
Q ss_conf             853014899859999991695889999730379--867998457999999887653356754311021314799973108
Q 003517          699 KSIASKNQESITLEERLVESSQEIAGVLKSMNK--CNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASV  776 (813)
Q Consensus       699 ~~~~~~~~~~v~~~e~~v~~~~~~~~~l~~~~~--~DLiivGr~~~~~GL~~w~~~e~~~eLG~igd~las~d~~~~~sv  776 (813)
                      ..+. ...+...-......+..+++  ++.+++  +||+|+|+|+ ++++++.       -+|            +++++
T Consensus        78 ~~~~-~~~~~~~~~~v~~G~~~~~I--~~~a~~~~~DLIV~Gs~g-~~~l~r~-------l~g------------~~~~~  134 (138)
T d1q77a_          78 WEKL-TGSTEIPGVEYRIGPLSEEV--KKFVEGKGYELVVWACYP-SAYLCKV-------IDG------------LNLAS  134 (138)
T ss_dssp             HHHH-HSCCCCCCEEEECSCHHHHH--HHHHTTSCCSEEEECSCC-GGGTHHH-------HHH------------SSSEE
T ss_pred             CCCC-CCCCEEEEEEEECCHHHHHH--HHHHHHCCCCEEEEECCC-CCHHHHH-------HCC------------CCCCE
T ss_conf             0112-22321479864023047888--876664269999995699-7678998-------559------------99887


Q ss_pred             EEEE
Q ss_conf             9996
Q 003517          777 VVLQ  780 (813)
Q Consensus       777 Lvvq  780 (813)
                      |||.
T Consensus       135 livk  138 (138)
T d1q77a_         135 LIVK  138 (138)
T ss_dssp             EECC
T ss_pred             EEEC
T ss_conf             9869

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.25  E-value=9.4e-06  Score=59.25  Aligned_cols=144  Identities=9%  Similarity=0.100  Sum_probs=90.1

Q ss_pred             EEEEEECCCCC---------CHHHHHHHHHHHHCCC---CEEEEEEEEECCCCCCCCCCCCCCCCCC--CCCCCCCCCCC
Q ss_conf             16998167990---------7399999999973089---9399999952499987556899998420--03467987401
Q 003517          624 YSVVVPFFGGL---------DDCEALAYGMRMAEHP---GIKLTVVKFVAPKGTSLTFGSDAPGVIS--IDLLRGDNDQV  689 (813)
Q Consensus       624 ~~I~v~f~Gg~---------ddreAL~~a~rma~~~---~v~ltvir~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  689 (813)
                      .||++..+|+.         ..+.|+.+|...+.+.   ...|+++|+.++...... . .......  ..-...+...+
T Consensus         2 ~ki~vavd~s~~~~~~~~~~~S~~Al~wal~~~~~~~~~~~~L~~vhv~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~   79 (171)
T d2gm3a1           2 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFD-D-VDSIYASPEDFRDMRQSNKA   79 (171)
T ss_dssp             EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC------------CCCCSHHHHHHHTTSHHH
T ss_pred             CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC-C-CCCCCCCHHHHHHHHHHHHH
T ss_conf             889999769856677899999999999999999877999728999995456543434-4-44445677789999999999


Q ss_pred             CHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHCCCC--CCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf             089999999853014899859999991695889999730379--867998457999999887653356754311021314
Q 003517          690 GDDAIISDFKSIASKNQESITLEERLVESSQEIAGVLKSMNK--CNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLAS  767 (813)
Q Consensus       690 ~d~~~l~~~~~~~~~~~~~v~~~e~~v~~~~~~~~~l~~~~~--~DLiivGr~~~~~GL~~w~~~e~~~eLG~igd~las  767 (813)
                      ..++++++++...  ....+.++..++. |.....+++.+++  +||+|||+|+ ++++.++       -+|.+.+.+..
T Consensus        80 ~~~~~l~~~~~~~--~~~~~~~~~~v~~-G~~~~~I~~~a~~~~~dlIV~G~~g-~~~~~~~-------~lGSv~~~vi~  148 (171)
T d2gm3a1          80 KGLHLLEFFVNKC--HEIGVGCEAWIKT-GDPKDVICQEVKRVRPDFLVVGSRG-LGRFQKV-------FVGTVSAFCVK  148 (171)
T ss_dssp             HHHHHHHHHHHHH--HHHTCEEEEEEEE-SCHHHHHHHHHHHHCCSEEEEEECC-CC---------------CHHHHHHH
T ss_pred             HHHHHHHHHHHHH--HHCCCCEEEEEEE-CCHHHHHHHHHHHCCCCEEEECCCC-CCCCCCC-------CCCCHHHHHHH
T ss_conf             9999999999998--8639944799982-7869999998764477579743677-5354557-------44869999983


Q ss_pred             CCCCCCCCEEEEEECC
Q ss_conf             7999731089996216
Q 003517          768 SEFSTTASVVVLQQYN  783 (813)
Q Consensus       768 ~d~~~~~svLvvqq~~  783 (813)
                      .   ++++||||+--.
T Consensus       149 ~---~~cpVlvV~~~~  161 (171)
T d2gm3a1         149 H---AECPVMTIKRNA  161 (171)
T ss_dssp             H---CSSCEEEEECCG
T ss_pred             C---CCCCEEEEECCC
T ss_conf             8---998989996898