Citrus Sinensis ID: 003529

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810---

MAGSWDGGYDSGSQSDGSYHFERLHIEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPSIALRNTIEEWNARNEAAQLDMARKSLNLGSSESDIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKIPNFSGIFPNMG

cccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccHHcccccHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHccccEEEEHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHcccccccHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccc

cccccccccccccccccccccccccccccccHccccccHHHccccEEEEccccHHHHHHHHHHHHcccccccccccccccEcccccccHHHHHHHHHHHHHHHcccccccHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHEHccccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccEEEEccccccEEEccccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHcccccccccccccccccEccccccEEEEEcccHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccc

magswdggydsgsqsdgsyhferlhiepiydafvcpltkqvmrdpvtlengqtFEREAIEKWFKECrengrkpvcpltqkelrstdlnpsiaLRNTIEEWNARNEAAQLDMARKslnlgssesdiMPALKYVQYFCqssrsnkhvvhnseLIPMIIDMLKSSSRKVRCTALETLRIVVeedddnkeilgqgdTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMtssksenlLTVEKAEKTLANLEKCENNVRQMAengrlqplltqilegpqeTKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVlihagilpplvkdlftvgsnhlpmrLKEVSATILANVVnsghdfdsitvgpdnqtlvSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAelperdlgltrQMLDEGAFGLIFSRVKsiqlgetrgsrfvtpFLEGLLSVLARVTFvlsdepdaIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLslesknltklpelppsgfcasifpcfskqpvitglcrlhrglcslketfCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDiayevsgdpnvstALVDAFQHADYRTRQIAERALKHidkipnfsgifpnmg

magswdggydsgSQSDGSYHFERLHIEPIYDAFVCPLTKQVMRDpvtlengqtfeREAIEKWFKecrengrkpvcpltqkelrstdlnpsiALRNTIEEWNARNEAAQLDMARKSLNLGSSESDIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLKSSSRKVRCTALETlrivveedddnkeilgqgdtvrTIVKFLshelsrerEEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDdiayevsgdpnVSTALVDAFQHADYRTRQIAERALKhidkipnfsgifpnmg

MAgswdggydsgsqsdgsYHFERLHIEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPSIALRNTIEEWNARNEAAQLDMARKSLNLGSSESDIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQvlvgltsspttvlsvvsAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKIPNFSGIFPNMG

******************YHFERLHIEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPL*************IALRNTIEEW************************IMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLKSSSRKVRCTALETLRIV**************DTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTS*****LLTV*************************LQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSL****LTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKIPNFSGI*****

****************************IYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPSIALRNTIEEWNARNE*********************PALKYVQYFCQSSRSNKHVVHNSELIPMI***************LETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEA**E*IGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHN***********IECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRV***************PFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLES***********SGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDD**********VSTALVDAFQH****TRQIAERALKHIDKIPNFS**F****

***************DGSYHFERLHIEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPSIALRNTIEEWNARNEAAQLDMARKSLNLGSSESDIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKIPNFSGIFPNMG

************************HIEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPSIALRNTIEEWNARNEAAQLDMARKSLNLGSSESDIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKIPNFSGI*****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MAGSWDGGYDSGSQSDGSYHFERLHIEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPSIALRNTxxxxxxxxxxxxxxxxxxxxxLGSSESDIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTxxxxxxxxxxxxxxxxxxxxxxxxGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKIPNFSGIFPNMG

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		813	2.2.26 [Sep-21-2011]
Q9SFX2		811	U-box domain-containing p	yes	no	0.991	0.993	0.662	0.0
Q9LM76		801	U-box domain-containing p	no	no	0.966	0.981	0.666	0.0
Q9CAA7		1033	Putative U-box domain-con	no	no	0.956	0.753	0.369	1e-145
Q9SNC6		660	U-box domain-containing p	no	no	0.394	0.486	0.261	7e-18
Q681N2		660	U-box domain-containing p	no	no	0.311	0.383	0.25	3e-17
Q5VRH9		611	U-box domain-containing p	no	no	0.403	0.536	0.251	3e-16
Q8GUG9		612	U-box domain-containing p	no	no	0.412	0.547	0.262	2e-14
Q84TG3		411	E3 ubiquitin-protein liga	no	no	0.207	0.411	0.274	7e-14
Q9ZV31		654	U-box domain-containing p	no	no	0.420	0.522	0.261	1e-13
Q9C9A6		628	U-box domain-containing p	no	no	0.391	0.506	0.238	2e-13

>sp\|Q9SFX2\|PUB43_ARATH U-box domain-containing protein 43 OS=Arabidopsis thaliana GN=PUB43 PE=2 SV=1	Back alignment and function desciption

 Score = 1055 bits (2729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/814 (66%), Positives = 668/814 (82%), Gaps = 8/814 (0%)

Query: 2   AGSWDGGYDSGSQSDGSYHFERLHIEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEK 61
           +GSWDG     SQSD S  FE   I+ IY+AF+CPLTKQVM +PVTLENGQTFEREAIEK
Sbjct: 4   SGSWDG-----SQSDNSSQFEP-GIDNIYEAFICPLTKQVMHNPVTLENGQTFEREAIEK 57

Query: 62  WFKECRENGRKPVCPLTQKELRSTDLNPSIALRNTIEEWNARNEAAQLDMARKSLNLGSS 121
           WF+ECRENG+   CP+T KEL  TDL+PSIALRNTIEEW ARN+A +LD+AR+SL LG++
Sbjct: 58  WFQECRENGQPLSCPITSKELSITDLSPSIALRNTIEEWRARNDALKLDIARQSLYLGNA 117

Query: 122 ESDIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEED 181
           E++I+ ALK V+  C++ R  +  V N +L+ +I DMLKSSS +VRC AL+TL++VVE D
Sbjct: 118 ETNILLALKNVREICRNIRKIRQRVCNPQLVRLITDMLKSSSHEVRCKALQTLQVVVEGD 177

Query: 182 DDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVG 241
           +++K I+ +GDTVRTIVKFLS E S+ RE AVS+L+ELSKSEALCEKIGSI+GAI++LVG
Sbjct: 178 EESKAIVAEGDTVRTIVKFLSQEPSKGREAAVSVLFELSKSEALCEKIGSIHGAIILLVG 237

Query: 242 MTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFL 301
           +TSSKSEN+ TVEKA+KTL NLE+ E NVRQMA NGRLQPLL ++LEG  ETK+S+A +L
Sbjct: 238 LTSSKSENVSTVEKADKTLTNLERSEENVRQMAINGRLQPLLAKLLEGSPETKVSMAFYL 297

Query: 302 GDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILP 361
           G LALN+DVKV+VA+TVGS LI++M++ +M  REAAL ALN ISS E SAK+LI+ GILP
Sbjct: 298 GVLALNNDVKVIVAQTVGSSLIDLMRTRDMSQREAALGALNNISSFEGSAKLLINTGILP 357

Query: 362 PLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHL 421
           PL+KDLF VG N LP+RLKEVSATILAN+VN G+DFD + VGP +QTLVSE+IV NLL L
Sbjct: 358 PLIKDLFYVGPNQLPIRLKEVSATILANIVNIGYDFDKVPVGPHHQTLVSEEIVENLLQL 417

Query: 422 ISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQN-DLRLASIE 480
            SNTGP I+ KLL VLVGLTS P +V++VVSAI++S A ISLVQFVE  +N DLRLASI+
Sbjct: 418 TSNTGPEIQGKLLAVLVGLTSCPNSVINVVSAIRNSAAIISLVQFVEIHENDDLRLASIK 477

Query: 481 LIQNLSPHMGHELADALRGAVGQLGSLIRVISENV-GISKEQAAAVGLLAELPERDLGLT 539
           L+ N+SPHM  ELA+ALR  VGQLGSL+ +ISEN   I++EQAAA GLLAELPERDL LT
Sbjct: 478 LLHNISPHMSEELANALRSTVGQLGSLVSIISENTPTITEEQAAAAGLLAELPERDLVLT 537

Query: 540 RQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCE 599
            ++L EGAF  I S++  I+ GE RG RF   FLEGL+S+LAR+TF L+ E DA   CCE
Sbjct: 538 MRLLREGAFEKIISKIVGIRQGEIRGIRFERTFLEGLVSILARITFALTKETDATLFCCE 597

Query: 600 HNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQP 659
            NL +LF++LLQSN  D +Q  SATALENLSLESKNLTK+PELPP  +C SIF C SK P
Sbjct: 598 KNLPSLFLDLLQSNSQDNIQRASATALENLSLESKNLTKIPELPPPTYCVSIFSCLSKPP 657

Query: 660 VITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIE 719
           V+ G+C++H+G+CS++E+FCL+EG AV+KL+ LLDH N+KVV  +LAALST+++DG+D+ 
Sbjct: 658 VVLGICKIHQGICSVRESFCLVEGQAVDKLVDLLDHENDKVVGPALAALSTLLEDGLDVV 717

Query: 720 QGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVD 779
           QGV ++ EA GI PIL+VLLE RTENL+ RAVW+VERILR ++IA EV  + NV+ ALVD
Sbjct: 718 QGVRLIDEADGITPILNVLLENRTENLRIRAVWMVERILRIEEIAREVGEEQNVTAALVD 777

Query: 780 AFQHADYRTRQIAERALKHIDKIPNFSGIFPNMG 813
           AFQ+AD+RTRQIAE+AL+HIDKIPNFSGIF N+G
Sbjct: 778 AFQNADFRTRQIAEKALRHIDKIPNFSGIFTNIG 811

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|Q9LM76\|PUB44_ARATH U-box domain-containing protein 44 OS=Arabidopsis thaliana GN=PUB44 PE=1 SV=1	Back alignment and function description

>sp\|Q9CAA7\|PUB42_ARATH Putative U-box domain-containing protein 42 OS=Arabidopsis thaliana GN=PUB42 PE=2 SV=1	Back alignment and function description

>sp\|Q9SNC6\|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1	Back alignment and function description

>sp\|Q681N2\|PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2	Back alignment and function description

>sp\|Q5VRH9\|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1	Back alignment and function description

>sp\|Q8GUG9\|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2	Back alignment and function description

>sp\|Q84TG3\|PUB23_ARATH E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23 PE=1 SV=1	Back alignment and function description

>sp\|Q9ZV31\|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1	Back alignment and function description

>sp\|Q9C9A6\|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		813
225457588		813	PREDICTED: U-box domain-containing prote	1.0	1.0	0.827	0.0
255539268		813	ubiquitin-protein ligase, putative [Rici	1.0	1.0	0.826	0.0
224108665		813	predicted protein [Populus trichocarpa]	1.0	1.0	0.835	0.0
356517280		814	PREDICTED: U-box domain-containing prote	1.0	0.998	0.817	0.0
356508594		813	PREDICTED: U-box domain-containing prote	0.998	0.998	0.819	0.0
224083336		817	predicted protein [Populus trichocarpa]	1.0	0.995	0.808	0.0
449452993		820	PREDICTED: U-box domain-containing prote	0.996	0.987	0.723	0.0
326501546		807	predicted protein [Hordeum vulgare subsp	0.990	0.997	0.662	0.0
297839507		811	armadillo/beta-catenin repeat family pro	0.991	0.993	0.660	0.0
15223037		811	U-box domain-containing protein 43 [Arab	0.991	0.993	0.662	0.0

>gi\|225457588\|ref\|XP_002273221.1\| PREDICTED: U-box domain-containing protein 43 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1400 bits (3625), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 673/813 (82%), Positives = 746/813 (91%)

Query: 1   MAGSWDGGYDSGSQSDGSYHFERLHIEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIE 60
           MAGSWDG YD GSQSD S+HFER H+EPIYD+FVCPLTKQVMRDP+TLENGQTFEREAIE
Sbjct: 1   MAGSWDGSYDPGSQSDESHHFERSHLEPIYDSFVCPLTKQVMRDPITLENGQTFEREAIE 60

Query: 61  KWFKECRENGRKPVCPLTQKELRSTDLNPSIALRNTIEEWNARNEAAQLDMARKSLNLGS 120
           KWFKEC+E+GRK VCPLT KELRSTDLNPSIALR+TIEEW ARNEA QLDMAR+SL+LGS
Sbjct: 61  KWFKECKESGRKLVCPLTLKELRSTDLNPSIALRHTIEEWTARNEAVQLDMARRSLSLGS 120

Query: 121 SESDIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEE 180
            E DI+ ALK VQY C  SRSNKH+V N++LIPMI+DMLKS SR+VRC ALETLRIV EE
Sbjct: 121 QEVDILLALKNVQYLCLKSRSNKHIVRNADLIPMIVDMLKSGSRRVRCRALETLRIVAEE 180

Query: 181 DDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILV 240
           D +NKEI+ +GDT+RTIVKFLSHELS+EREEAVSLLYELSKSE LCEKIGS+NGAILILV
Sbjct: 181 DAENKEIMAEGDTIRTIVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSLNGAILILV 240

Query: 241 GMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAF 300
           GMTSSKSENLLTVEKA+KTL NLE CENN+RQMAENGRL PLLTQILEGP ETKLS+A +
Sbjct: 241 GMTSSKSENLLTVEKADKTLENLEMCENNIRQMAENGRLHPLLTQILEGPPETKLSMATY 300

Query: 301 LGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGIL 360
           LG+L LN+D++V VARTVG  LIN+MKSGN+Q REAALKALNQISS + SA+VLI  GIL
Sbjct: 301 LGELVLNNDMQVFVARTVGLALINMMKSGNLQLREAALKALNQISSFDASARVLIEEGIL 360

Query: 361 PPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLH 420
           PPL+KDL TVG+N LPMRLKEVSATILANVV SG+DFDSI VG D+QTLVSEDIVHNLLH
Sbjct: 361 PPLIKDLLTVGTNQLPMRLKEVSATILANVVQSGYDFDSIPVGSDHQTLVSEDIVHNLLH 420

Query: 421 LISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIE 480
           LISNTGP IECKLLQVLVGLT+SPT VL VV+AIKSSGATISLVQF+EAPQ +LRLASI+
Sbjct: 421 LISNTGPAIECKLLQVLVGLTNSPTAVLDVVAAIKSSGATISLVQFIEAPQKELRLASIK 480

Query: 481 LIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTR 540
           L+QNLSPHMG ELADALRG  GQLGSLIRVISEN+GI++EQA A GLLA+LPERDLGLTR
Sbjct: 481 LLQNLSPHMGQELADALRGTAGQLGSLIRVISENIGITEEQAVAAGLLADLPERDLGLTR 540

Query: 541 QMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEH 600
           QMLDEGAF ++FSRV  I+ GETRG+RF+TP+LEGL+ VLARVTFVL+DEPDAIALC E+
Sbjct: 541 QMLDEGAFQMVFSRVVRIRQGETRGNRFMTPYLEGLVRVLARVTFVLADEPDAIALCREY 600

Query: 601 NLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPV 660
           NLAA+F ELLQSNGLDKVQMVSA +LENLS ESKNLTKLPELP  GFCASIFPC SKQPV
Sbjct: 601 NLAAVFTELLQSNGLDKVQMVSAMSLENLSQESKNLTKLPELPAPGFCASIFPCLSKQPV 660

Query: 661 ITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQ 720
           ITGLCRLHRG CSLK++FCLLEG AVEKL+ALLDH NE+VVEA+LAA+ST++DDGVDIEQ
Sbjct: 661 ITGLCRLHRGTCSLKDSFCLLEGQAVEKLVALLDHQNEQVVEAALAAISTLLDDGVDIEQ 720

Query: 721 GVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDA 780
           GV +LCEA+GIKPILDVLLEKRTENL+RRAVW VERILRTD+IAYE+SGDPNVSTALVDA
Sbjct: 721 GVNILCEAEGIKPILDVLLEKRTENLRRRAVWAVERILRTDEIAYEISGDPNVSTALVDA 780

Query: 781 FQHADYRTRQIAERALKHIDKIPNFSGIFPNMG 813
           FQHADYRTRQIAERALKH+DKIPNFSGIFPN+G
Sbjct: 781 FQHADYRTRQIAERALKHVDKIPNFSGIFPNIG 813

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255539268\|ref\|XP_002510699.1\| ubiquitin-protein ligase, putative [Ricinus communis] gi\|223551400\|gb\|EEF52886.1\| ubiquitin-protein ligase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224108665\|ref\|XP_002333360.1\| predicted protein [Populus trichocarpa] gi\|222836311\|gb\|EEE74732.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356517280\|ref\|XP_003527316.1\| PREDICTED: U-box domain-containing protein 43-like [Glycine max]	Back alignment and taxonomy information

>gi\|356508594\|ref\|XP_003523040.1\| PREDICTED: U-box domain-containing protein 43-like [Glycine max]	Back alignment and taxonomy information

>gi\|224083336\|ref\|XP_002306986.1\| predicted protein [Populus trichocarpa] gi\|222856435\|gb\|EEE93982.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449452993\|ref\|XP_004144243.1\| PREDICTED: U-box domain-containing protein 44-like [Cucumis sativus] gi\|449489349\|ref\|XP_004158286.1\| PREDICTED: U-box domain-containing protein 44-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|326501546\|dbj\|BAK02562.1\| predicted protein [Hordeum vulgare subsp. vulgare]	Back alignment and taxonomy information

>gi\|297839507\|ref\|XP_002887635.1\| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi\|297333476\|gb\|EFH63894.1\| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|15223037|ref|NP_177765.1| U-box domain-containing protein 43 [Arabidopsis thaliana] gi|145327715|ref|NP_001077833.1| U-box domain-containing protein 43 [Arabidopsis thaliana] gi|75265798|sp|Q9SFX2.1|PUB43_ARATH RecName: Full=U-box domain-containing protein 43; AltName: Full=Plant U-box protein 43 gi|6554480|gb|AAF16662.1|AC012394_11 hypothetical protein; 49547-46930 [Arabidopsis thaliana] gi|332197712|gb|AEE35833.1| U-box domain-containing protein 43 [Arabidopsis thaliana] gi|332197713|gb|AEE35834.1| U-box domain-containing protein 43 [Arabidopsis thaliana]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		813
TAIR\|locus:2030462		801	SAUL1 "senescence-associated E	0.965	0.980	0.652	5.4e-269
TAIR\|locus:2014584		811	PUB43 "plant U-box 43" [Arabid	0.969	0.971	0.651	2.3e-268
TAIR\|locus:2162276		660	PUB15 "Plant U-Box 15" [Arabid	0.403	0.496	0.254	6.3e-19
TAIR\|locus:2075140		660	PUB13 "plant U-box 13" [Arabid	0.092	0.113	0.45	3.1e-18
TAIR\|locus:2013990		628	AT1G71020 [Arabidopsis thalian	0.249	0.323	0.253	2.8e-17
UNIPROTKB\|Q5VRH9		611	PUB12 "U-box domain-containing	0.440	0.585	0.255	3e-17
TAIR\|locus:2017719		612	AT1G23030 [Arabidopsis thalian	0.392	0.521	0.267	1.1e-16
TAIR\|locus:2045334		829	PUB4 "plant U-box 4" [Arabidop	0.286	0.281	0.247	8.6e-16
TAIR\|locus:2082682		632	PUB14 "plant U-box 14" [Arabid	0.116	0.150	0.346	4.6e-15
UNIPROTKB\|Q0IMG9		694	SPL11 "E3 ubiquitin-protein li	0.407	0.476	0.254	5.9e-15

TAIR\|locus:2030462 SAUL1 "senescence-associated E3 ubiquitin ligase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2587 (915.7 bits), Expect = 5.4e-269, P = 5.4e-269
 Identities = 518/794 (65%), Positives = 645/794 (81%)

Query:    20 HFERLHIEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQ 79
             HFER  ++ IY+AF+CPLTK+VM DPVTLENG+TFEREAIEKWFKECR++GR P CPLT 
Sbjct:    15 HFER-GVDHIYEAFICPLTKEVMHDPVTLENGRTFEREAIEKWFKECRDSGRPPSCPLTS 73

Query:    80 KELRSTDLNPSIALRNTIEEWNARNEAAQLDMARKSLNLGSSESDIMPALKYVQYFCQSS 139
             +EL STD++ SIALRNTIEEW +RN+AA+LD+AR+SL LG++E+DI+ AL +V+  C++ 
Sbjct:    74 QELTSTDVSASIALRNTIEEWRSRNDAAKLDIARQSLFLGNAETDILQALMHVRQICRTI 133

Query:   140 RSNKHVVHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVK 199
             RSN+H V NS+LI MIIDMLKS+S +VR  AL+TL++VVE DD++K I+ +GDTVRT+VK
Sbjct:   134 RSNRHGVRNSQLIHMIIDMLKSTSHRVRYKALQTLQVVVEGDDESKAIVAEGDTVRTLVK 193

Query:   200 FLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKT 259
             FLSHE S+ RE AVSLL+ELSKSEALCEKIGSI+GA+++LVG+TSS SEN+  VEKA++T
Sbjct:   194 FLSHEPSKGREAAVSLLFELSKSEALCEKIGSIHGALILLVGLTSSNSENVSIVEKADRT 253

Query:   260 LANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG 319
             L N+E+ E  VRQMA  GRLQPLL ++LEG  ETKLS+A+FLG+L LN+DVKVLVA+TVG
Sbjct:   254 LENMERSEEIVRQMASYGRLQPLLGKLLEGSPETKLSMASFLGELPLNNDVKVLVAQTVG 313

Query:   320 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRL 379
             S L+++M+SG+M  REAALKALN+ISS E SAKVLI  GILPPL+KDLF VG N+LP+RL
Sbjct:   314 SSLVDLMRSGDMPQREAALKALNKISSFEGSAKVLISKGILPPLIKDLFYVGPNNLPIRL 373

Query:   380 KEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQXXXX 439
             KEVSATILAN+VN G+DFD  T       LVSE+ V NLLHLISNTGP I+CKLL+    
Sbjct:   374 KEVSATILANIVNIGYDFDKAT-------LVSENRVENLLHLISNTGPAIQCKLLEVLVG 426

Query:   440 XXXXXXXXXXXXXAIKSSGATISLVQFVEAPQND-LRLASIELIQNLSPHMGHELADALR 498
                          AIK+SGA ISLVQF+E  +ND LRLASI+L+ NLSP M  ELA AL 
Sbjct:   427 LTSCPKTVPKVVYAIKTSGAIISLVQFIEVRENDDLRLASIKLLHNLSPFMSEELAKALC 486

Query:   499 GAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSI 558
             G  GQLGSL+ +ISE   I++EQAAA GLLAELP+RDLGLT++ML+ GAF  I S+V  I
Sbjct:   487 GTAGQLGSLVAIISEKTPITEEQAAAAGLLAELPDRDLGLTQEMLEVGAFEKIISKVFGI 546

Query:   559 QLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKV 618
             + G+ +G RFV PFLEGL+ +LAR+TFV + E  AI  C EH++A+LF+ LLQSNG D +
Sbjct:   547 RQGDIKGMRFVNPFLEGLVRILARITFVFNKEARAINFCREHDVASLFLHLLQSNGQDNI 606

Query:   619 QMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETF 678
             QMVSA ALENLSLES  LT++P+ PP  +C SIF C  K  V+ GLC++H+G+CSL+ETF
Sbjct:   607 QMVSAMALENLSLESIKLTRMPDPPPVNYCGSIFSCVRKPHVVNGLCKIHQGICSLRETF 666

Query:   679 CLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVL 738
             CL+EG AVEKL+ALLDH N KVVEA+LAALS++++DG+D+E+GV +L EA GI+ IL+VL
Sbjct:   667 CLVEGGAVEKLVALLDHENVKVVEAALAALSSLLEDGLDVEKGVKILDEADGIRHILNVL 726

Query:   739 LEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 798
              E RTE L RRAVW+VERILR +DIA EV+ + ++S ALVDAFQ+AD+RTRQIAE ALKH
Sbjct:   727 RENRTERLTRRAVWMVERILRIEDIAREVAEEQSLSAALVDAFQNADFRTRQIAENALKH 786

Query:   799 IDKIPNFSGIFPNM 812
             IDKIPNFS IFPN+
Sbjct:   787 IDKIPNFSSIFPNI 800

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0010115 "regulation of abscisic acid biosynthetic process" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0010271 "regulation of chlorophyll catabolic process" evidence=IMP

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IMP

GO:0090359 "negative regulation of abscisic acid biosynthetic process" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

TAIR\|locus:2014584 PUB43 "plant U-box 43" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2162276 PUB15 "Plant U-Box 15" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2013990 AT1G71020 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SFX2	PUB43_ARATH	6, ., 3, ., 2, ., -	0.6621	0.9913	0.9938	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00002902001	SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (813 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		813
smart00504		63	smart00504, Ubox, Modified RING finger domain	7e-21
pfam04564		73	pfam04564, U-box, U-box domain	7e-12
pfam13445		55	pfam13445, zf-RING_LisH, RING-type zinc-finger, Li	4e-09
cd00020		120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-07
cd00020		120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-07
cd00020		120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-06
cd00020		120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-05
pfam11789		57	pfam11789, zf-Nse, Zinc-finger of the MIZ type in	1e-04
PLN03200		2102	PLN03200, PLN03200, cellulose synthase-interactive	0.002

>gnl\|CDD\|128780 smart00504, Ubox, Modified RING finger domain	Back alignment and domain information

 Score = 86.5 bits (215), Expect = 7e-21
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 6/69 (8%)

Query: 32  AFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPSI 91
            F+CP++ +VM+DPV L +GQT+ER AIEKW             P+T + L   DL P++
Sbjct: 1   EFLCPISLEVMKDPVILPSGQTYERSAIEKWLLS------HGTDPVTGQPLTHEDLIPNL 54

Query: 92  ALRNTIEEW 100
           AL++ I+EW
Sbjct: 55  ALKSAIQEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl\|CDD\|203049 pfam04564, U-box, U-box domain	Back alignment and domain information

>gnl\|CDD\|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif	Back alignment and domain information

>gnl\|CDD\|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats	Back alignment and domain information

>gnl\|CDD\|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats	Back alignment and domain information

>gnl\|CDD\|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats	Back alignment and domain information

>gnl\|CDD\|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats	Back alignment and domain information

>gnl\|CDD\|192832 pfam11789, zf-Nse, Zinc-finger of the MIZ type in Nse subunit	Back alignment and domain information

>gnl\|CDD\|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		813
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	100.0
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	100.0
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	100.0
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	99.97
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.96
PF05804		708	KAP: Kinesin-associated protein (KAP)	99.95
PF05804		708	KAP: Kinesin-associated protein (KAP)	99.94
KOG1048		717	consensus Neural adherens junction protein Plakoph	99.9
KOG1048		717	consensus Neural adherens junction protein Plakoph	99.87
PF04564		73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.81
KOG4199		461	consensus Uncharacterized conserved protein [Funct	99.78
KOG4199		461	consensus Uncharacterized conserved protein [Funct	99.77
KOG2122		2195	consensus Beta-catenin-binding protein APC, contai	99.72
KOG2122		2195	consensus Beta-catenin-binding protein APC, contai	99.72
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.67
KOG4500		604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.66
smart00504		63	Ubox Modified RING finger domain. Modified RING fi	99.64
KOG1222		791	consensus Kinesin associated protein KAP [Intracel	99.62
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.6
KOG4500		604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.59
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.59
KOG1222		791	consensus Kinesin associated protein KAP [Intracel	99.52
KOG1293		678	consensus Proteins containing armadillo/beta-caten	99.52
KOG1293		678	consensus Proteins containing armadillo/beta-caten	99.5
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.5
PRK09687		280	putative lyase; Provisional	99.5
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	99.48
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.47
PRK09687		280	putative lyase; Provisional	99.46
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.44
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	99.44
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.43
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.42
PTZ00429		746	beta-adaptin; Provisional	99.28
PTZ00429		746	beta-adaptin; Provisional	99.21
PF15227		42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.19
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	99.18
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	99.13
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	99.1
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	99.08
PLN03208		193	E3 ubiquitin-protein ligase RMA2; Provisional	99.07
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	99.05
cd00256		429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.04
PF11789		57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	98.98
TIGR00599		397	rad18 DNA repair protein rad18. This family is bas	98.97
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.89
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	98.87
cd00256		429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.87
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	98.86
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	98.8
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.77
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.74
PF13923		39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.74
PF13445		43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.72
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	98.72
PF05536		543	Neurochondrin: Neurochondrin	98.68
KOG1824		1233	consensus TATA-binding protein-interacting protein	98.68
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.63
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	98.61
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.61
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	98.61
KOG1789		2235	consensus Endocytosis protein RME-8, contains DnaJ	98.59
KOG0287		442	consensus Postreplication repair protein RAD18 [Re	98.56
KOG2759		442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.56
KOG2759		442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.56
PF00097		41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.55
KOG4642		284	consensus Chaperone-dependent E3 ubiquitin protein	98.53
TIGR02270		410	conserved hypothetical protein. Members are found	98.52
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	98.5
PF13920		50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.45
TIGR02270		410	conserved hypothetical protein. Members are found	98.45
KOG0823		230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.44
KOG1824		1233	consensus TATA-binding protein-interacting protein	98.43
KOG3678		832	consensus SARM protein (with sterile alpha and arm	98.42
KOG2973		353	consensus Uncharacterized conserved protein [Funct	98.38
PF05536		543	Neurochondrin: Neurochondrin	98.37
PHA02929		238	N1R/p28-like protein; Provisional	98.37
PF13639		44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.35
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.31
PF14835		65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.31
COG5432		391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.29
PF14664		371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.27
KOG0317		293	consensus Predicted E3 ubiquitin ligase, integral	98.26
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	98.26
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.24
KOG3678		832	consensus SARM protein (with sterile alpha and arm	98.21
KOG4413		524	consensus 26S proteasome regulatory complex, subun	98.21
PHA02926		242	zinc finger-like protein; Provisional	98.18
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	98.18
KOG1789		2235	consensus Endocytosis protein RME-8, contains DnaJ	98.18
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	98.18
KOG0320		187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.17
COG1413		335	FOG: HEAT repeat [Energy production and conversion	98.16
KOG1242		569	consensus Protein containing adaptin N-terminal re	98.16
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	98.15
KOG0212		675	consensus Uncharacterized conserved protein [Funct	98.11
cd00162		45	RING RING-finger (Really Interesting New Gene) dom	98.09
KOG4646		173	consensus Uncharacterized conserved protein, conta	98.09
KOG2042		943	consensus Ubiquitin fusion degradation protein-2 [	98.08
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	98.06
KOG4413		524	consensus 26S proteasome regulatory complex, subun	98.06
COG1413		335	FOG: HEAT repeat [Energy production and conversion	98.04
KOG4646		173	consensus Uncharacterized conserved protein, conta	98.01
KOG2177		386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.0
KOG1242		569	consensus Protein containing adaptin N-terminal re	97.99
KOG0212		675	consensus Uncharacterized conserved protein [Funct	97.99
smart00184		39	RING Ring finger. E3 ubiquitin-protein ligase acti	97.98
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.97
KOG2973		353	consensus Uncharacterized conserved protein [Funct	97.93
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	97.92
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.89
PF10165		446	Ric8: Guanine nucleotide exchange factor synembryn	97.88
PF00514		41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.85
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	97.81
PF14664		371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.79
PF00514		41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.79
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.77
PF14634		44	zf-RING_5: zinc-RING finger domain	97.74
COG5113		929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	97.73
KOG2164		513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.73
TIGR00570		309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.69
KOG2259		823	consensus Uncharacterized conserved protein [Funct	97.67
KOG2660		331	consensus Locus-specific chromosome binding protei	97.66
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	97.66
KOG2734		536	consensus Uncharacterized conserved protein [Funct	97.62
COG5574		271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.6
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.58
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	97.58
COG5222		427	Uncharacterized conserved protein, contains RING Z	97.57
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	97.52
KOG2259		823	consensus Uncharacterized conserved protein [Funct	97.52
PF12678		73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.48
KOG0289		506	consensus mRNA splicing factor [General function p	97.48
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	97.46
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.44
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.43
COG5369		743	Uncharacterized conserved protein [Function unknow	97.41
KOG2734		536	consensus Uncharacterized conserved protein [Funct	97.4
KOG0311		381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.4
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.38
KOG0297		391	consensus TNF receptor-associated factor [Signal t	97.35
KOG4159		398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.35
PF10165		446	Ric8: Guanine nucleotide exchange factor synembryn	97.34
KOG0567		289	consensus HEAT repeat-containing protein [General	97.33
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	97.27
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	97.2
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.15
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	97.1
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	97.08
PRK14707		2710	hypothetical protein; Provisional	97.03
COG5152		259	Uncharacterized conserved protein, contains RING a	97.01
KOG2979		262	consensus Protein involved in DNA repair [General	96.98
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	96.97
KOG1813		313	consensus Predicted E3 ubiquitin ligase [Posttrans	96.91
COG5369		743	Uncharacterized conserved protein [Function unknow	96.91
smart00185		41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.9
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	96.87
smart00185		41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.85
KOG1002		791	consensus Nucleotide excision repair protein RAD16	96.81
KOG0567		289	consensus HEAT repeat-containing protein [General	96.74
PF12861		85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	96.71
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	96.67
COG5231		432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	96.61
COG5231		432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	96.58
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.56
KOG0802		543	consensus E3 ubiquitin ligase [Posttranslational m	96.56
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	96.51
KOG2879		298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.5
KOG4628		348	consensus Predicted E3 ubiquitin ligase [Posttrans	96.41
COG5540		374	RING-finger-containing ubiquitin ligase [Posttrans	96.31
KOG3039		303	consensus Uncharacterized conserved protein [Funct	96.25
KOG4535		728	consensus HEAT and armadillo repeat-containing pro	96.25
KOG3039		303	consensus Uncharacterized conserved protein [Funct	96.13
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	96.08
PF04641		260	Rtf2: Rtf2 RING-finger	96.07
PF11841		160	DUF3361: Domain of unknown function (DUF3361)	96.03
PF08569		335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	96.01
KOG0804		493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	95.95
PF11841		160	DUF3361: Domain of unknown function (DUF3361)	95.94
KOG3036		293	consensus Protein involved in cell differentiation	95.91
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.9
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	95.9
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	95.88
COG5243		491	HRD1 HRD ubiquitin ligase complex, ER membrane com	95.87
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.85
KOG4367		699	consensus Predicted Zn-finger protein [Function un	95.83
KOG0824		324	consensus Predicted E3 ubiquitin ligase [Posttrans	95.81
PF08569		335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	95.74
PF09759		102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	95.71
KOG3036		293	consensus Protein involved in cell differentiation	95.69
KOG1734		328	consensus Predicted RING-containing E3 ubiquitin l	95.63
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	95.58
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	95.48
PF13764		802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.47
PF05004		309	IFRD: Interferon-related developmental regulator (	95.37
KOG4151		748	consensus Myosin assembly protein/sexual cycle pro	95.34
KOG3113		293	consensus Uncharacterized conserved protein [Funct	95.31
PF04078		262	Rcd1: Cell differentiation family, Rcd1-like ; Int	95.24
PF05004		309	IFRD: Interferon-related developmental regulator (	95.2
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	95.11
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.04
COG5096		757	Vesicle coat complex, various subunits [Intracellu	95.0
PF13764		802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	94.97
KOG0826		357	consensus Predicted E3 ubiquitin ligase involved i	94.93
PF02891		50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	94.93
PF09759		102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	94.87
PF04063		192	DUF383: Domain of unknown function (DUF383); Inter	94.84
PF08045		257	CDC14: Cell division control protein 14, SIN compo	94.82
COG5096		757	Vesicle coat complex, various subunits [Intracellu	94.78
KOG4151		748	consensus Myosin assembly protein/sexual cycle pro	94.78
PF11698		119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	94.66
KOG0414		1251	consensus Chromosome condensation complex Condensi	94.62
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	94.62
PF04078		262	Rcd1: Cell differentiation family, Rcd1-like ; Int	94.58
KOG1788		2799	consensus Uncharacterized conserved protein [Funct	94.55
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.47
PRK14707		2710	hypothetical protein; Provisional	94.4
PF11698		119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	94.25
KOG0828		636	consensus Predicted E3 ubiquitin ligase [Posttrans	94.15
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	94.03
PF08045		257	CDC14: Cell division control protein 14, SIN compo	94.0
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	93.99
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	93.96
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	93.93
PF11701		157	UNC45-central: Myosin-binding striated muscle asse	93.33
PF04063		192	DUF383: Domain of unknown function (DUF383); Inter	93.32
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	93.29
KOG2062		929	consensus 26S proteasome regulatory complex, subun	93.0
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	92.98
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	92.96
KOG1645		463	consensus RING-finger-containing E3 ubiquitin liga	92.76
smart00744		49	RINGv The RING-variant domain is a C4HC3 zinc-fing	92.73
PF07814		361	WAPL: Wings apart-like protein regulation of heter	92.65
KOG2817		394	consensus Predicted E3 ubiquitin ligase [Posttrans	92.6
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	92.35
KOG2611		698	consensus Neurochondrin/leucine-rich protein (Neur	92.28
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	92.25
KOG4535		728	consensus HEAT and armadillo repeat-containing pro	92.02
PF11701		157	UNC45-central: Myosin-binding striated muscle asse	91.97
KOG1832		1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	91.93
KOG1785		563	consensus Tyrosine kinase negative regulator CBL [	91.83
KOG0825		1134	consensus PHD Zn-finger protein [General function	91.72
KOG1832		1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	91.66
COG5194		88	APC11 Component of SCF ubiquitin ligase and anapha	91.25
KOG1788		2799	consensus Uncharacterized conserved protein [Funct	91.22
KOG2611		698	consensus Neurochondrin/leucine-rich protein (Neur	90.94
COG5116		926	RPN2 26S proteasome regulatory complex component [	90.67
PF06025		379	DUF913: Domain of Unknown Function (DUF913); Inter	90.36
COG5627		275	MMS21 DNA repair protein MMS21 [DNA replication, r	90.36
KOG2999		713	consensus Regulator of Rac1, required for phagocyt	90.35
KOG2025		892	consensus Chromosome condensation complex Condensi	90.22
KOG0827		465	consensus Predicted E3 ubiquitin ligase [Posttrans	90.11
PF06371		187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	89.99
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	89.93
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	89.75
PF07814		361	WAPL: Wings apart-like protein regulation of heter	89.44
KOG1039		344	consensus Predicted E3 ubiquitin ligase [Posttrans	89.31
KOG1566		342	consensus Conserved protein Mo25 [Function unknown	89.14
KOG2999		713	consensus Regulator of Rac1, required for phagocyt	89.11
COG5109		396	Uncharacterized conserved protein, contains RING Z	89.09
KOG2032		533	consensus Uncharacterized conserved protein [Funct	88.96
KOG4692		489	consensus Predicted E3 ubiquitin ligase [Posttrans	88.9
KOG0414		1251	consensus Chromosome condensation complex Condensi	88.81
KOG1967		1030	consensus DNA repair/transcription protein Mms19 [	88.56
KOG1493		84	consensus Anaphase-promoting complex (APC), subuni	88.17
KOG4464		532	consensus Signaling protein RIC-8/synembryn (regul	88.08
KOG1571		355	consensus Predicted E3 ubiquitin ligase [Posttrans	87.82
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	87.81
PF11793		70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	87.53
KOG2956		516	consensus CLIP-associating protein [General functi	87.34
COG5209		315	RCD1 Uncharacterized protein involved in cell diff	87.31
COG5209		315	RCD1 Uncharacterized protein involved in cell diff	87.01
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	86.83
KOG2025		892	consensus Chromosome condensation complex Condensi	86.44
PF12031		257	DUF3518: Domain of unknown function (DUF3518); Int	86.35
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	85.68
KOG1941		518	consensus Acetylcholine receptor-associated protei	85.65
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	85.44
PF14447		55	Prok-RING_4: Prokaryotic RING finger family 4	85.08
PF14668		73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	84.92
KOG3161		861	consensus Predicted E3 ubiquitin ligase [Posttrans	84.33
KOG2062		929	consensus 26S proteasome regulatory complex, subun	84.29
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	84.14
KOG3800		300	consensus Predicted E3 ubiquitin ligase containing	84.02
PF12031		257	DUF3518: Domain of unknown function (DUF3518); Int	83.99
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	83.98
KOG0883		518	consensus Cyclophilin type, U box-containing pepti	83.86
KOG4172		62	consensus Predicted E3 ubiquitin ligase [Posttrans	83.62
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	83.36
KOG4265		349	consensus Predicted E3 ubiquitin ligase [Posttrans	83.34
PF05290		140	Baculo_IE-1: Baculovirus immediate-early protein (	83.12
PF08324		268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	82.45
KOG1001		674	consensus Helicase-like transcription factor HLTF/	82.45
PF06371		187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	82.1
KOG2930		114	consensus SCF ubiquitin ligase, Rbx1 component [Po	81.58
PF14570		48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	81.07

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

Probab=100.00  E-value=4.4e-56  Score=536.22  Aligned_cols=625  Identities=17%  Similarity=0.225  Sum_probs=517.3

Q ss_pred             hhhccCC-CCcccHHHHHHHHHHHhhcCCcccccccc-cCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhc
Q 003529          113 RKSLNLG-SSESDIMPALKYVQYFCQSSRSNKHVVHN-SELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQ  190 (813)
Q Consensus       113 ~~~l~~~-~~~~~~~~al~~l~~l~~~~~~~r~~i~~-~g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~  190 (813)
                      +++|.+. ++.++...++..|+.+++.++++|..|.+ .|+||.|+.+|.+++..++..|+.+|.+++.+ ++++..|+.
T Consensus        19 ve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~-e~nk~~Iv~   97 (2102)
T PLN03200         19 IEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKE-EDLRVKVLL   97 (2102)
T ss_pred             HHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-HHHHHHHHH
Confidence            3444433 23456667899999999999999999985 99999999999999999999999999999987 589999999


Q ss_pred             CCCHHHHHHHhccCcHHHHHHHHHHHHHhhcC---chhHhHHhhhhchHHHHHHhcccCCC-CHHHHHHHHHHHHhhccC
Q 003529          191 GDTVRTIVKFLSHELSREREEAVSLLYELSKS---EALCEKIGSINGAILILVGMTSSKSE-NLLTVEKAEKTLANLEKC  266 (813)
Q Consensus       191 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~---~~~~~~i~~~~g~i~~Lv~lL~~~s~-~~~~~~~a~~~L~~L~~~  266 (813)
                      .|+||+|+.+|++++.+.|+.|+.+|++|+.+   +.++..|+...|+||.|+.+++.++. +..+++.++.+|+||+.+
T Consensus        98 ~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~  177 (2102)
T PLN03200         98 GGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGS  177 (2102)
T ss_pred             cCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999987   44566776678999999999994221 334677889999999999


Q ss_pred             CccHH-HHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCC-chhHHHHHhhh-HHHHHHHHhcC-CHHHHHHHHHHHH
Q 003529          267 ENNVR-QMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN-SDVKVLVARTV-GSCLINIMKSG-NMQAREAALKALN  342 (813)
Q Consensus       267 ~~~~~-~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g-i~~Lv~lL~~~-~~~~~~~a~~aL~  342 (813)
                      ++++. .+++.|+||.|+.+|.++++..+.+++.+|.+++.. ++.+..+.+.| ||.|+++|+++ +..+++.|+++|.
T Consensus       178 ~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~  257 (2102)
T PLN03200        178 TDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALE  257 (2102)
T ss_pred             ccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHH
Confidence            99885 568999999999999999999999999999888875 66888887776 89999999875 5689999999999


Q ss_pred             HhhCC-cccHHHHHHcCChHHHHHHHhccCCC----CCChhHHHHHHHHHHHHHhcCCC-----------Ccc-------
Q 003529          343 QISSC-EPSAKVLIHAGILPPLVKDLFTVGSN----HLPMRLKEVSATILANVVNSGHD-----------FDS-------  399 (813)
Q Consensus       343 ~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~----~~~~~~~~~a~~~L~nL~~~~~~-----------~~~-------  399 (813)
                      ||+.+ ++++..+++.|+||+|++++.+....    ..+..+++.|+|+|.|||.....           .+.       
T Consensus       258 nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada  337 (2102)
T PLN03200        258 ALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADT  337 (2102)
T ss_pred             HHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHH
Confidence            99995 68999999999999999999853210    12356799999999999984211           000       


Q ss_pred             ----------c--------ccC--------------CCC---------------------ccccchhhHHHHHHhhcCCC
Q 003529          400 ----------I--------TVG--------------PDN---------------------QTLVSEDIVHNLLHLISNTG  426 (813)
Q Consensus       400 ----------~--------~~~--------------~~~---------------------~~l~~~~~v~~Lv~lL~~~~  426 (813)
                                +        .++              ++.                     ..+.+.++++.||.||..++
T Consensus       338 ~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~  417 (2102)
T PLN03200        338 LGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMAT  417 (2102)
T ss_pred             HhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCC
Confidence                      0        000              000                     01233456677888888888


Q ss_pred             hHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHH
Q 003529          427 PTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGS  506 (813)
Q Consensus       427 ~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~  506 (813)
                      .++|++++++|++|+.++.   +.+..+.+.|+++.|+++|.+++..+|..|++++.+|+.. +++....+.+. |++++
T Consensus       418 ~evQ~~Av~aL~~L~~~~~---e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~-ndenr~aIiea-GaIP~  492 (2102)
T PLN03200        418 ADVQEELIRALSSLCCGKG---GLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDE-VDESKWAITAA-GGIPP  492 (2102)
T ss_pred             HHHHHHHHHHHHHHhCCCH---HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHC-CCHHH
Confidence            9999999999999998865   6788899999999999999999999999999999999964 33334566666 99999


Q ss_pred             HHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhcc
Q 003529          507 LIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFV  586 (813)
Q Consensus       507 Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~  586 (813)
                      |+++|.+++.  +++..|+++|+|++.++.+.+..+.+.|+++.|+++|.+          .....++.++.+|.+++..
T Consensus       493 LV~LL~s~~~--~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~s----------gd~~~q~~Aa~AL~nLi~~  560 (2102)
T PLN03200        493 LVQLLETGSQ--KAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKN----------GGPKGQEIAAKTLTKLVRT  560 (2102)
T ss_pred             HHHHHcCCCH--HHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhC----------CCHHHHHHHHHHHHHHHhc
Confidence            9999998885  999999999999999777777777789999999999986          2356788899999888632


Q ss_pred             CCCChH---------------H---------------------HHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhc
Q 003529          587 LSDEPD---------------A---------------------IALCCEHNLAALFIELLQSNGLDKVQMVSATALENLS  630 (813)
Q Consensus       587 l~~~~~---------------~---------------------~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls  630 (813)
                        .+++               .                     ++.....|++|.|++||+++ ++.+|+.|+++|.++.
T Consensus       561 --~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~  637 (2102)
T PLN03200        561 --ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIF  637 (2102)
T ss_pred             --cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHh
Confidence              1211               1                     11122478999999999999 9999999999999998


Q ss_pred             cccccccCCCCCCCCCCCcccccccccCCCCCCCCcccccccCccccchhhhccchHHHHHhhccCchhHHHHHHHHHHh
Q 003529          631 LESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALST  710 (813)
Q Consensus       631 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~  710 (813)
                      ...++.                                        .-.++..|+|+||+.+|.+.+.+++..|++||.+
T Consensus       638 a~~~d~----------------------------------------~~avv~agaIpPLV~LLss~~~~v~keAA~AL~n  677 (2102)
T PLN03200        638 SSRQDL----------------------------------------CESLATDEIINPCIKLLTNNTEAVATQSARALAA  677 (2102)
T ss_pred             cCChHH----------------------------------------HHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            654321                                        1136789999999999999999999999999999


Q ss_pred             hhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHHHHHcchhhhhhhcCCCcchHHHHHHhhhcCchhHH
Q 003529          711 VIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQ  790 (813)
Q Consensus       711 L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~~~~~~~~~~~~~~~~~~~Lv~~l~~~~~~~~~  790 (813)
                      |+....  +.+...+.+.|+|++|+++| ...+.++.+.|+.+|.+|+.+.+.+..+...+. +++|+++|++|++..|+
T Consensus       678 L~~~~~--~~q~~~~v~~GaV~pL~~LL-~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~-I~~Lv~lLr~G~~~~k~  753 (2102)
T PLN03200        678 LSRSIK--ENRKVSYAAEDAIKPLIKLA-KSSSIEVAEQAVCALANLLSDPEVAAEALAEDI-ILPLTRVLREGTLEGKR  753 (2102)
T ss_pred             HHhCCC--HHHHHHHHHcCCHHHHHHHH-hCCChHHHHHHHHHHHHHHcCchHHHHHHhcCc-HHHHHHHHHhCChHHHH
Confidence            997543  23446678999999999999 489999999999999999999999888876555 57999999999999999


Q ss_pred             HHHHHHHHhccc
Q 003529          791 IAERALKHIDKI  802 (813)
Q Consensus       791 ~Aa~~L~~l~~~  802 (813)
                      .|+++|.+|.+-
T Consensus       754 ~Aa~AL~~L~~~  765 (2102)
T PLN03200        754 NAARALAQLLKH  765 (2102)
T ss_pred             HHHHHHHHHHhC
Confidence            999999999863

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]	Back alignment and domain information

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]	Back alignment and domain information

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis	Back alignment and domain information

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]	Back alignment and domain information

>smart00504 Ubox Modified RING finger domain	Back alignment and domain information

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]	Back alignment and domain information

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C	Back alignment and domain information

>TIGR00599 rad18 DNA repair protein rad18	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A	Back alignment and domain information

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05536 Neurochondrin: Neurochondrin	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]	Back alignment and domain information

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]	Back alignment and domain information

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF05536 Neurochondrin: Neurochondrin	Back alignment and domain information

>PHA02929 N1R/p28-like protein; Provisional	Back alignment and domain information

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B	Back alignment and domain information

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]	Back alignment and domain information

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term	Back alignment and domain information

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]	Back alignment and domain information

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PHA02926 zinc finger-like protein; Provisional	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Back alignment and domain information

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]	Back alignment and domain information

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]	Back alignment and domain information

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>smart00184 RING Ring finger	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []	Back alignment and domain information

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term	Back alignment and domain information

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF14634 zf-RING_5: zinc-RING finger domain	Back alignment and domain information

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG0289 consensus mRNA splicing factor [General function prediction only]	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>COG5369 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]	Back alignment and domain information

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []	Back alignment and domain information

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14707 hypothetical protein; Provisional	Back alignment and domain information

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]	Back alignment and domain information

>KOG2979 consensus Protein involved in DNA repair [General function prediction only]	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5369 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>smart00185 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>smart00185 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]	Back alignment and domain information

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>PF04641 Rtf2: Rtf2 RING-finger	Back alignment and domain information

>PF11841 DUF3361: Domain of unknown function (DUF3361)	Back alignment and domain information

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis	Back alignment and domain information

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]	Back alignment and domain information

>PF11841 DUF3361: Domain of unknown function (DUF3361)	Back alignment and domain information

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]	Back alignment and domain information

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis	Back alignment and domain information

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10	Back alignment and domain information

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]	Back alignment and domain information

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	Back alignment and domain information

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10	Back alignment and domain information

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function	Back alignment and domain information

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []	Back alignment and domain information

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PRK14707 hypothetical protein; Provisional	Back alignment and domain information

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle	Back alignment and domain information

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins	Back alignment and domain information

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D	Back alignment and domain information

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle	Back alignment and domain information

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]	Back alignment and domain information

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]	Back alignment and domain information

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]	Back alignment and domain information

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing	Back alignment and domain information

>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D	Back alignment and domain information

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1566 consensus Conserved protein Mo25 [Function unknown]	Back alignment and domain information

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]	Back alignment and domain information

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]	Back alignment and domain information

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]	Back alignment and domain information

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]	Back alignment and domain information

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A	Back alignment and domain information

>KOG2956 consensus CLIP-associating protein [General function prediction only]	Back alignment and domain information

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]	Back alignment and domain information

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised	Back alignment and domain information

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4	Back alignment and domain information

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5	Back alignment and domain information

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0	Back alignment and domain information

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes	Back alignment and domain information

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []	Back alignment and domain information

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		813
1t1h_A		78	Nmr Solution Structure Of The U Box Domain From Atp		1e-08
2yu4_A		94	Solution Structure Of The Sp-Ring Domain In Non-Smc		1e-04
2jdq_A		450	C-Terminal Domain Of Influenza A Virus Polymerase P		2e-04
3tj3_A		447	Structure Of Importin A5 Bound To The N-Terminus Of		2e-04

>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78

Back alignment and structure

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 33  FVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPSIA 92
           F CP++ ++M+DPV +  GQT+ER +I+KW     + G K  CP +Q+ L    L P+  
Sbjct: 9   FRCPISLELMKDPVIVSTGQTYERSSIQKWL----DAGHK-TCPKSQETLLHAGLTPNYV 63
Query: 93  LRNTIEEWNARN 104
           L++ I  W   N
Sbjct: 64  LKSLIALWCESN 75

PyMOL of 1t1h

>pdb|2YU4|A Chain A, Solution Structure Of The Sp-Ring Domain In Non-Smc Element 2 Homolog (Mms21, S. Cerevisiae) Length = 94

Back alignment and structure

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Back alignment and structure

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		813
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-38
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-28
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-24
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-36
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-32
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-11
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	5e-34
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	2e-31
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	1e-29
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	1e-11
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	1e-08
1t1h_A		78	Gspef-atpub14, armadillo repeat containing protein	1e-28
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-24
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	9e-20
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-14
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	4e-13
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-12
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-09
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	8e-08
2yu4_A		94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	5e-24
2f42_A		179	STIP1 homology and U-box containing protein 1; cha	3e-22
2kr4_A		85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	1e-21
2kre_A		100	Ubiquitin conjugation factor E4 B; U-box domain, E	1e-21
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	2e-21
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	1e-14
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	9e-13
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	6e-08
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	4e-06
1wgm_A		98	Ubiquitin conjugation factor E4A; ubiquitinating e	7e-20
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	5e-19
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	1e-16
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	2e-14
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	1e-13
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	4e-13
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	7e-11
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	1e-08
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	4e-18
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-18
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-16
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	8e-07
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-17
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-14
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-11
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	1e-16
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	2e-14
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	3e-13
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	3e-13
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	2e-12
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	7e-07
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	1e-05
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	4e-16
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	2e-15
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	2e-08
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	2e-07
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	2e-07
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	4e-04
3nmz_A		458	APC variant protein; protein-protein complex, arma	4e-16
3nmz_A		458	APC variant protein; protein-protein complex, arma	9e-16
3nmz_A		458	APC variant protein; protein-protein complex, arma	1e-12
3nmz_A		458	APC variant protein; protein-protein complex, arma	1e-09
3nmz_A		458	APC variant protein; protein-protein complex, arma	8e-08
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	8e-16
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	4e-12
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	2e-10
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	3e-08
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	1e-06
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	1e-05
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	4e-05
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	5e-04
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	8e-04
3m62_A		968	Ubiquitin conjugation factor E4; armadillo-like re	3e-15
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-13
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-10
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-10
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-06
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	6e-05
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
2c2l_A		281	CHIP, carboxy terminus of HSP70-interacting protei	2e-12
3htk_C		267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	4e-12
2bay_A		61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	6e-12
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-10
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-09
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-06
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	7e-05
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-04
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	7e-04
3hct_A		118	TNF receptor-associated factor 6; cross-brace, bet	7e-09
3ztg_A		92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	2e-07
2ecy_A		66	TNF receptor-associated factor 3; metal binding pr	3e-07
3hcs_A		170	TNF receptor-associated factor 6; cross-brace, bet	5e-07
1rmd_A		116	RAG1; V(D)J recombination, antibody, MAD, ring fin	6e-06
2ecw_A		85	Tripartite motif-containing protein 30; metal bind	7e-06
2y43_A		99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	1e-05
2yur_A		74	Retinoblastoma-binding protein 6; P53-associated c	2e-05
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	2e-05
3fl2_A		124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	3e-05
1qzv_F		154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-05
3knv_A		141	TNF receptor-associated factor 2; cross-brace, alt	5e-05
2ecv_A		85	Tripartite motif-containing protein 5; metal bindi	7e-05
2csy_A		81	Zinc finger protein 183-like 1; ring finger protei	1e-04
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	3e-04
2egp_A		79	Tripartite motif-containing protein 34; ZF-C3HC4 d	6e-04
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	7e-04
1jm7_A		112	BRCA1, breast cancer type 1 susceptibility protein	7e-04

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

 Score =  150 bits (381), Expect = 7e-38
 Identities = 86/661 (13%), Positives = 198/661 (29%), Gaps = 77/661 (11%)

Query: 152 IPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREE 211
            P  +  L   S+ ++         VV   +   +       +  + K L+ E      +
Sbjct: 117 HPTNVQRLAEPSQMLK-------HAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNK 169

Query: 212 AVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVR 271
           A  ++++LSK EA    I      +  +V    + + ++ T      TL NL      + 
Sbjct: 170 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTSGTLHNLSHHREGLL 228

Query: 272 QMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSC--LINIMKSG 329
            + ++G +  L+  +              L +L L+ +   +  R  G    ++ ++   
Sbjct: 229 AIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 288

Query: 330 NMQAREAALKALNQISSCEPSAKVLI-HAGILPPLVKDLFTVGSNHLPMRLKEVSATILA 388
           N++        L  ++     +K++I  +G    LV  +      +   +L   ++ +L 
Sbjct: 289 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM----RTYTYEKLLWTTSRVLK 344

Query: 389 NVVNSGHDFDSITVGPDN-QTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTV 447
            +          +V   N   +V    +  L   +++    +    L  L  L+ + T  
Sbjct: 345 VL----------SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ 394

Query: 448 LSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLG-- 505
             +   +       +LVQ + +   ++   +  ++ NL+ +         +  V Q+G  
Sbjct: 395 EGMEGLLG------TLVQLLGSDDINVVTCAAGILSNLTCN-----NYKNKMMVCQVGGI 443

Query: 506 -SLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETR 564
            +L+R +            A+  L  L  R                +   VK +      
Sbjct: 444 EALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSH- 502

Query: 565 GSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSAT 624
                      L+     +   L+  P   A   E       ++LL        Q  ++ 
Sbjct: 503 ---------WPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR-AHQDTQRRTSM 552

Query: 625 ALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKE-TFCLLEG 683
                                            + ++         L         +   
Sbjct: 553 GGTQQQFVEG--------------------VRMEEIVEACTGALHILARDIHNRIVIRGL 592

Query: 684 HAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRT 743
           + +   + LL    E +   +   L  +  D    ++    +       P+ + LL  R 
Sbjct: 593 NTIPLFVQLLYSPIENIQRVAAGVLCELAQD----KEAAEAIEAEGATAPLTE-LLHSRN 647

Query: 744 ENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKIP 803
           E +   A  V+ R+       Y+      ++++L          T  +        + + 
Sbjct: 648 EGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGEPLG 707

Query: 804 N 804
            
Sbjct: 708 Y 708

PyMOL of 2z6g

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94	Back alignment and structure

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179	Back alignment and structure

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85	Back alignment and structure

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281	Back alignment and structure

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267	Back alignment and structure

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296	Back alignment and structure

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118	Back alignment and structure

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92	Back alignment and structure

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66	Back alignment and structure

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170	Back alignment and structure

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116	Back alignment and structure

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85	Back alignment and structure

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99	Back alignment and structure

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124	Back alignment and structure

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154	Back alignment and structure

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141	Back alignment and structure

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85	Back alignment and structure

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131	Back alignment and structure

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79	Back alignment and structure

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778	Back alignment and structure

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		813
d1t1ha_		78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	2e-14
d1xm9a1		457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	5e-14
d1xm9a1		457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-13
d1xm9a1		457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	0.003
d1jdha_		529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-14
d1jdha_		529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-07
d1jdha_		529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-07
d1jdha_		529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	0.002
d1jm7a_		103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	2e-12
d2c2la2		80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	8e-10
d1wgma_		98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	4e-09
d1fbva4		79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	6e-08
d1rmda2		86	g.44.1.1 (A:1-86) V(D)J recombination activating p	1e-06
d1xqra1		264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	3e-06
d1q1sc_		434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	7e-05
d1q1sc_		434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	5e-04
d1ibrb_		458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	1e-04
d1jm7b_		97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	2e-04
d1wa5b_		503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-04
d1wa5b_		503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	7e-04
d1bora_		56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	4e-04
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.001
d2baya1		56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	0.003
d2vgla_		584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	0.004

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78	Back information, alignment and structure


class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 66.6 bits (162), Expect = 2e-14
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 5/76 (6%)

Query: 29  IYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLN 88
             + F CP++ ++M+DPV +  GQT+ER +I+KW            CP +Q+ L    L 
Sbjct: 5   FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA-----GHKTCPKSQETLLHAGLT 59

Query: 89  PSIALRNTIEEWNARN 104
           P+  L++ I  W   N
Sbjct: 60  PNYVLKSLIALWCESN 75

PyMOL of d1t1ha_

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529	Back information, alignment and structure

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103	Back information, alignment and structure

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80	Back information, alignment and structure

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98	Back information, alignment and structure

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79	Back information, alignment and structure

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458	Back information, alignment and structure

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503	Back information, alignment and structure

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		813
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.97
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.97
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	99.91
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	99.9
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.89
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.88
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.86
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.82
d1wgma_		98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.81
d1t1ha_		78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.8
d2c2la2		80	STIP1 homology and U box-containing protein 1, STU	99.79
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.78
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.78
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.76
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.72
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	99.59
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.54
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.54
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1jm7a_		103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.48
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1rmda2		86	V(D)J recombination activating protein 1 (RAG1), d	99.34
d1jm7b_		97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.33
d2baya1		56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.25
d1fbva4		79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.01
d1ho8a_		477	Regulatory subunit H of the V-type ATPase {Baker's	98.97
d1ho8a_		477	Regulatory subunit H of the V-type ATPase {Baker's	98.9
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.75
d1chca_		68	Immediate early protein, IEEHV {Equine herpesvirus	98.6
d1g25a_		65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.55
d1bora_		56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.54
d1v87a_		114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.5
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.31
d1iyma_		55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.07
d1ur6b_		52	Not-4 N-terminal RING finger domain {Human (Homo s	98.05
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	98.0
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	97.98
d1vyxa_		60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	97.87
d3dplr1		88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	97.82
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	97.53
d1wima_		94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.39
d1upka_		330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	96.01
d1upka_		330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	95.91
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	95.27
d1lsha1		336	Lipovitellin-phosvitin complex, superhelical domai	94.55
d2bnxa1		343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	93.85

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=352.15  Aligned_cols=384  Identities=18%  Similarity=0.171  Sum_probs=320.8

Q ss_pred             CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             6967999997538999999999999998420493002465137878999998535-767999999999999621732576
Q 003529          149 SELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSH-ELSREREEAVSLLYELSKSEALCE  227 (813)
Q Consensus       149 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~  227 (813)
                      .++||.|+++|++++..++..|+..+.+++..+...+..+...|+++.|+++|++ ++.+.++.++.+|++++.+++.+.
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~   95 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL   95 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             97999999987299999999999999999845577899987133999999998479999999999999999958916699


Q ss_pred             HHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCC
Q ss_conf             886434469999984036898979999999998832058763-8899985991999999706997889999999988438
Q 003529          228 KIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENN-VRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL  306 (813)
Q Consensus       228 ~i~~~~g~i~~Lv~lL~~~s~~~~~~~~A~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~  306 (813)
                      .++. .|+++.|+++|.  +++++++..|+.+|.|++.+.++ +..+.+.|++++|+.+|.+++..++..++.+|.+++.
T Consensus        96 ~i~~-~g~i~~Li~lL~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  172 (529)
T d1jdha_          96 AIFK-SGGIPALVKMLG--SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY  172 (529)
T ss_dssp             HHHH-TTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHH-CCCHHHHHHHHC--CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             9998-798999999857--9798999999999998651320113678765881489998870576888888999988763


Q ss_pred             C-CHHHHHHHHHH-HHHHHHHHHC-CCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf             9-02499999624-9999999725-9999999999999995089610799997299599999980018999992379999
Q 003529          307 N-SDVKVLVARTV-GSCLINIMKS-GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVS  383 (813)
Q Consensus       307 ~-~~~~~~i~~~g-i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a  383 (813)
                      . ++.+..+...| +++|+.++.. ....++..+++++.+++.+++++..+++.|+++.|+.++.+.     +..++..+
T Consensus       173 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~-----~~~~~~~a  247 (529)
T d1jdha_         173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-----SQRLVQNC  247 (529)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS-----CHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC-----CHHHHHHH
T ss_conf             0047888887605636899999861048999999998751101332330456543334699986254-----01555301


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHH
Q ss_conf             99999997069987654448997522113029999973217996899999999998006997228999999946987999
Q 003529          384 ATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISL  463 (813)
Q Consensus       384 ~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~~g~i~~L  463 (813)
                      +++|.+++.....           .....++++.|++++.++++.++..++.+|++++.++.   ..+..+.+.++++.|
T Consensus       248 ~~~l~~ls~~~~~-----------~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~---~~~~~i~~~~~i~~L  313 (529)
T d1jdha_         248 LWTLRNLSDAATK-----------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY---KNKMMVCQVGGIEAL  313 (529)
T ss_dssp             HHHHHHHHTTCTT-----------CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCH---HHHHHHHHTTHHHHH
T ss_pred             HHHHHHCCCCCCC-----------HHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHH
T ss_conf             5677750432110-----------25664010144541245428899999998875012203---788888875007899


Q ss_pred             HHHHH--CCCHHHHHHHHHHHHHHCCCC-CH-HHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             98650--799279999999999818888-77-889997302033998987410488773999999999721788997889
Q 003529          464 VQFVE--APQNDLRLASIELIQNLSPHM-GH-ELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLT  539 (813)
Q Consensus       464 v~lL~--~~~~~v~~~A~~~L~~Ls~~~-~~-~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~  539 (813)
                      +.++.  ++.++++..++.++.+++... .. .....+... ++++.|++++..++. ...+..++++|.++.. +...+
T Consensus       314 i~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~-~~l~~L~~ll~~~~~-~~~~~~~~~~l~~l~~-~~~~~  390 (529)
T d1jdha_         314 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH-YGLPVVVKLLHPPSH-WPLIKATVGLIRNLAL-CPANH  390 (529)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHT-TCHHHHHHTTSTTCC-HHHHHHHHHHHHHHTT-SGGGH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHC-CCCHHHHHHHHCCCH-HHHHHHHHHHHHHCCH-HHHHH
T ss_conf             99998400111378899988500220000000356667764-561247898715312-7899999998750000-35666


Q ss_pred             HHHHHCCCHHHHHHHHHH
Q ss_conf             999826957999999632
Q 003529          540 RQMLDEGAFGLIFSRVKS  557 (813)
Q Consensus       540 ~~l~~~g~i~~L~~lL~~  557 (813)
                      ..+.+.|+++.++.+|.+
T Consensus       391 ~~l~~~g~i~~L~~lL~~  408 (529)
T d1jdha_         391 APLREQGAIPRLVQLLVR  408 (529)
T ss_dssp             HHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHC
T ss_conf             666532657999999866

PyMOL of d1jdha_

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}	Back information, alignment and structure

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}	Back information, alignment and structure

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}	Back information, alignment and structure

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure