Citrus Sinensis ID: 003541

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-

MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEFLLQTPIFVSCSADRMDLWFCYGRYSYRIQDACPWLAVNLLHA

cccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHccccccccccccEEEEEEccccccccHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEccccccccccccccccEEEEEccccccccccccHHHHHHHHHHHcccccccEEEEEccccccccHHHHHHHHHHHccccccccEEEEccccccccccccccccccccEEEccccccccccccccEEccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHccccEEEcccccccccHHcccc

ccccccccccccHcccccEEEEccccccccccccEEEEccccccccccccEEEEccccccccccccccccHcccccccccccccccccccHHHHccccccccccHHHHHHHHHcccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEcccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccccccEEEEEcccccccccEEEHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccccccccccccccccEEEEEcccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHccccEEEEcccccEEccHHHHHHHHHHHccccccccEEEEEccccccccccccccccccEEEEEEcccccccccccEEEcccHHEEEEEEccccccccccccccccccccccccccccccccccccHHcccccccccccccccHHHHHHcccccccccHHHHHHHHHHccHccccccEEEEcEHHHcccccccccHHHHHHHHEEHHEcccccccccccEcccccccccccccccccEEEEccEEEEEEEEEcccccHHHEcc

MESEGETGVKSiknvggqvcqicgdnvgktvdgnpfvacdvcafpvcrpcyeyerkdgnqscpqcktrykkhkgspailgdreedgdaddgasdfnyssenqnQKQKISERMLSWHMrygqgedasapkydnevshnhiprltggqevsgelsaaspehlsmaspgvgpgkrihysgdinqspsirvvdpvrefgspglgnvawkervdgwkmkqeknvvpmstgqatsergggdidastdvlvddsllndearqplsrkvpipssrinpyRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFdqfpkwlpvnreTYLDRLSLryeregepsqlAAVDIFVStvdplkepplvtaNTVLSILAvdypvdkvscyvsddgaAMLTFEALSETSEFARKWVpfckkynieprapewyfaqkidylkdkvqpsfvKDRRAMKREYEEFKIRINGLVAKaqkipeegwvmqdgtpwpgnntrdhpgMIQVFLgenggldaegnelprlvyvsrekrpgfqhhkkaGAMNALVRVSAVLtngpfllnldcdhYINNSKALREAMCFmmdpnlgkhvcyvqfpqrfdgidrndryanrntvffdinlrgldgiqgpvyvgtgcvfnrtalygyepplkpkhrkpgllsslfggsrkknsksskkgsdkkksskhvdptvpifsledieegvegagfddekSLLMSQMSLEKRFGQSAVFVASTLmenggvpqsatHETLLKEAIHVISCgyedktewgsefllqtpifvscsadrmdlwfcygrysyriqdaCPWLAVNLLHA

mesegetgvksiknvggQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYerkdgnqscpqcktrykkhkgspailgdreedGDADDGASdfnyssenqnqkqKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDINQSPSIRVVDPVrefgspglgnvawkervdgwkmkqeknvvpmstgqatsergggdidasTDVLVDDSLlndearqplsrkvpipssrinpyRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKidylkdkvqpsfvkDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGyepplkpkhrkpgllsslfggsrkknsksskkgsdkkksskhvdptvpifsledieegVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEFLLQTPIFVSCSADRMDLWFCYGRYSYRIQDACPWLAVNLLHA

MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILgdreedgdaddgasdFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMViflrliilgiflyyriKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFggsrkknsksskkgsdkkksskHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEFLLQTPIFVSCSADRMDLWFCYGRYSYRIQDACPWLAVNLLHA

***********IKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYER*********************************************************************************************************************************IRVVDPVREFGSPGLGNVAWKERVDGWK******************************************************RINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSR*****FQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYE******************************************************************************FGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEFLLQTPIFVSCSADRMDLWFCYGRYSYRIQDACPWLAVNLL**

*********************ICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGDADDGASDF*******************************************************************************************************LGNVAWKER*************************************************LSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKI*******QPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRK********************************EGVEG*************MSLEKRFGQSAVFVAST************HETLLKEAIHVISCGYEDKTEWGSEFLLQTPIFVSCSADRMDLWFCYGRYSYRIQDACPWLAVNLLHA

**********SIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKT********PAILGDREEDGDADDGASDFNY**********ISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKN***************GDIDASTDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFG***********************DPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEFLLQTPIFVSCSADRMDLWFCYGRYSYRIQDACPWLAVNLLHA

********V*S****GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK*H****************DDGASDFNYS***********ERMLSWH*RY*QGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQE**********************************DEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGS***************************FS*EDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEFLLQTPIFVSCSADRMDLWFCYGRYSYRIQDACPWLAVNLLHA

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		811	2.2.26 [Sep-21-2011]
Q941L0		1065	Cellulose synthase A cata	yes	no	0.930	0.708	0.828	0.0
Q84ZN6		1081	Probable cellulose syntha	yes	no	0.924	0.693	0.772	0.0
Q84M43		1073	Probable cellulose syntha	no	no	0.919	0.695	0.760	0.0
A2XN66		1073	Probable cellulose syntha	N/A	no	0.919	0.695	0.760	0.0
O48946		1081	Cellulose synthase A cata	no	no	0.922	0.691	0.648	0.0
Q9SKJ5		1065	Probable cellulose syntha	no	no	0.912	0.694	0.627	0.0
Q6AT26		1076	Probable cellulose syntha	no	no	0.902	0.680	0.657	0.0
A2Y0X2		1076	Probable cellulose syntha	N/A	no	0.902	0.680	0.657	0.0
Q69V23		1093	Probable cellulose syntha	no	no	0.924	0.686	0.637	0.0
Q851L8		1092	Probable cellulose syntha	no	no	0.916	0.680	0.621	0.0

>sp\|Q941L0\|CESA3_ARATH Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2	Back alignment and function desciption

 Score = 1298 bits (3359), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/769 (82%), Positives = 691/769 (89%), Gaps = 14/769 (1%)

Query: 1   MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQ 60
           MESEGET  K +KN+  Q CQIC DNVGKTVDG+ FVACD+C+FPVCRPCYEYERKDGNQ
Sbjct: 1   MESEGETAGKPMKNIVPQTCQICSDNVGKTVDGDRFVACDICSFPVCRPCYEYERKDGNQ 60

Query: 61  SCPQCKTRYKKHKGSPAILGDREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYG 120
           SCPQCKTRYK+ KGSPAI GD++EDG AD+G  +FNY      QK+KISERML WH+  G
Sbjct: 61  SCPQCKTRYKRLKGSPAIPGDKDEDGLADEGTVEFNYP-----QKEKISERMLGWHLTRG 115

Query: 121 QGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDIN 180
           +GE+   P+YD EVSHNH+PRLT  Q+ SGE SAASPE LS++S   G GKR+ YS D+N
Sbjct: 116 KGEEMGEPQYDKEVSHNHLPRLTSRQDTSGEFSAASPERLSVSSTIAG-GKRLPYSSDVN 174

Query: 181 QSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDAST 240
           QSP+ R+VDPV      GLGNVAWKERVDGWKMKQEKN  P+ST QA SERGG DIDAST
Sbjct: 175 QSPNRRIVDPV------GLGNVAWKERVDGWKMKQEKNTGPVST-QAASERGGVDIDAST 227

Query: 241 DVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIAL 300
           D+L D++LLNDEARQPLSRKV IPSSRINPYRMVI LRL+IL +FL+YRI NPV NA AL
Sbjct: 228 DILADEALLNDEARQPLSRKVSIPSSRINPYRMVIMLRLVILCLFLHYRITNPVPNAFAL 287

Query: 301 WLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDP 360
           WL+SVICEIWFA+SWI DQFPKW PVNRETYLDRL+LRY+REGEPSQLAAVDIFVSTVDP
Sbjct: 288 WLVSVICEIWFALSWILDQFPKWFPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDP 347

Query: 361 LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYN 420
           LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML+FE+L+ETSEFARKWVPFCKKY+
Sbjct: 348 LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLAETSEFARKWVPFCKKYS 407

Query: 421 IEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVM 480
           IEPRAPEWYFA KIDYLKDKVQ SFVKDRRAMKREYEEFKIRIN LV+KA K PEEGWVM
Sbjct: 408 IEPRAPEWYFAAKIDYLKDKVQTSFVKDRRAMKREYEEFKIRINALVSKALKCPEEGWVM 467

Query: 481 QDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNA 540
           QDGTPWPGNNTRDHPGMIQVFLG+NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNA
Sbjct: 468 QDGTPWPGNNTRDHPGMIQVFLGQNGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNA 527

Query: 541 LVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRN 600
           LVRVSAVLTNGPF+LNLDCDHYINNSKALREAMCF+MDPNLGK VCYVQFPQRFDGID+N
Sbjct: 528 LVRVSAVLTNGPFILNLDCDHYINNSKALREAMCFLMDPNLGKQVCYVQFPQRFDGIDKN 587

Query: 601 DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFG 660
           DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPP+K KH+KP LLS L G
Sbjct: 588 DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKVKHKKPSLLSKLCG 647

Query: 661 GSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKR 720
           GSRKKNSK+ K+ SDKKKS +H D TVP+F+L+DIEEGVEGAGFDDEK+LLMSQMSLEKR
Sbjct: 648 GSRKKNSKAKKE-SDKKKSGRHTDSTVPVFNLDDIEEGVEGAGFDDEKALLMSQMSLEKR 706

Query: 721 FGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEF 769
           FGQSAVFVASTLMENGGVP SAT E LLKEAIHVISCGYEDK++WG E 
Sbjct: 707 FGQSAVFVASTLMENGGVPPSATPENLLKEAIHVISCGYEDKSDWGMEI 755

Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. Involved in the primary cell wall formation, especially in roots.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 2

>sp\|Q84ZN6\|CESA8_ORYSJ Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1	Back alignment and function description

>sp\|Q84M43\|CESA2_ORYSJ Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1	Back alignment and function description

>sp\|A2XN66\|CESA2_ORYSI Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1	Back alignment and function description

>sp\|O48946\|CESA1_ARATH Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1	Back alignment and function description

>sp\|Q9SKJ5\|CESAA_ARATH Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1	Back alignment and function description

>sp\|Q6AT26\|CESA1_ORYSJ Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1	Back alignment and function description

>sp\|A2Y0X2\|CESA1_ORYSI Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1	Back alignment and function description

>sp\|Q69V23\|CESA3_ORYSJ Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1	Back alignment and function description

>sp\|Q851L8\|CESA5_ORYSJ Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		811
255582781		1085	Cellulose synthase A catalytic subunit 6	0.948	0.708	0.903	0.0
183211890		1084	cellulose synthase [Betula platyphylla]	0.948	0.709	0.900	0.0
429326428		1079	cellulose synthase [Populus tomentosa]	0.948	0.712	0.910	0.0
385718955		1081	cellulose synthase 3 [Paeonia lactiflora	0.945	0.709	0.883	0.0
307557871		1075	cellulose synthase [Leucaena leucocephal	0.939	0.708	0.889	0.0
162955786		1080	cellulose synthase [Eucalyptus grandis]	0.945	0.710	0.897	0.0
162955780		1080	cellulose synthase [Eucalyptus grandis]	0.945	0.710	0.897	0.0
340343837		1080	cellulose synthase A [Eucalyptus camaldu	0.945	0.710	0.896	0.0
347953823		1067	cellulose synthase catalytic subunit [Go	0.933	0.709	0.881	0.0
347953853		1067	cellulose synthase catalytic subunit [Go	0.933	0.709	0.881	0.0

>gi\|255582781\|ref\|XP_002532166.1\| Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis] gi\|223528153\|gb\|EEF30219.1\| Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1405 bits (3638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 700/775 (90%), Positives = 728/775 (93%), Gaps = 6/775 (0%)

Query: 1   MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQ 60
           MESEGETG K +K+VG QVCQIC DNVG T+DG+PFVAC+VCAFPVCRPCYEYERKDGNQ
Sbjct: 1   MESEGETGAKPVKSVGRQVCQICSDNVGTTLDGDPFVACNVCAFPVCRPCYEYERKDGNQ 60

Query: 61  SCPQCKTRYKKHKGSPAILGDREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYG 120
           SCPQCKTRYK+ KGSPAILGDREED DADDGA DFNY +E QNQ+QKI+ERMLSW M YG
Sbjct: 61  SCPQCKTRYKRQKGSPAILGDREEDCDADDGAKDFNYPTETQNQRQKIAERMLSWQMNYG 120

Query: 121 QGED-ASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIH---YS 176
           +GED   APKYD EVSHNHIP LT G EVSGELSAASPEH+SMASPGVG  KRIH   Y+
Sbjct: 121 RGEDDVGAPKYDKEVSHNHIPLLTNGHEVSGELSAASPEHVSMASPGVGGAKRIHTLPYA 180

Query: 177 GDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQE--KNVVPMSTGQATSERGGG 234
            DIN SP+ RVVDPVREFGSPGLGNVAWKERVDGWKMKQ+  KNV+PMS+GQA SERG G
Sbjct: 181 ADINASPNPRVVDPVREFGSPGLGNVAWKERVDGWKMKQDPVKNVIPMSSGQAPSERGVG 240

Query: 235 DIDASTDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPV 294
           DIDASTDVLVDDSLLNDEARQPLSRKV IPSSRINPYRMVI LRLIIL IFL+YRI NPV
Sbjct: 241 DIDASTDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLIILCIFLHYRITNPV 300

Query: 295 HNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIF 354
            NA ALWLISVICEIWFAISWI DQFPKWLP+NRETYLDRLSLRY+REGEPSQLAAVDIF
Sbjct: 301 TNAYALWLISVICEIWFAISWILDQFPKWLPINRETYLDRLSLRYDREGEPSQLAAVDIF 360

Query: 355 VSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVP 414
           VSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVP
Sbjct: 361 VSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVP 420

Query: 415 FCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIP 474
           FCKKYNIEPRAPEWYF QKIDYLKDKVQ SFVK+RRAMKREYEEFK+ INGLVAKAQKIP
Sbjct: 421 FCKKYNIEPRAPEWYFTQKIDYLKDKVQTSFVKERRAMKREYEEFKVHINGLVAKAQKIP 480

Query: 475 EEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKK 534
           EEGW+MQDGTPWPGNNTRDHPGMIQVFLG+NGGLDAEGNELPRLVYVSREKRPGFQHHKK
Sbjct: 481 EEGWIMQDGTPWPGNNTRDHPGMIQVFLGQNGGLDAEGNELPRLVYVSREKRPGFQHHKK 540

Query: 535 AGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRF 594
           AGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCF+MDPNLGK VCYVQFPQRF
Sbjct: 541 AGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPNLGKQVCYVQFPQRF 600

Query: 595 DGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGL 654
           DGIDRNDRYANRNTVFFDINLRGLDG+QGPVYVGTGCVFNRTALYGYEPPLKPKH+KPGL
Sbjct: 601 DGIDRNDRYANRNTVFFDINLRGLDGVQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGL 660

Query: 655 LSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQ 714
           LSSL GGSRKKNSKS+KKG DKKKS KHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQ
Sbjct: 661 LSSLCGGSRKKNSKSNKKGLDKKKSGKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQ 720

Query: 715 MSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEF 769
           MSLEKRFGQSAVFVASTLMENGGVPQSAT ETLLKEAIHVISCGYEDKT+WGSE 
Sbjct: 721 MSLEKRFGQSAVFVASTLMENGGVPQSATSETLLKEAIHVISCGYEDKTDWGSEI 775

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class: N/A

Phylum: Streptophyta

Superkingdom:

>gi\|183211890\|gb\|ACC59195.1\| cellulose synthase [Betula platyphylla]	Back alignment and taxonomy information

>gi\|429326428\|gb\|AFZ78554.1\| cellulose synthase [Populus tomentosa]	Back alignment and taxonomy information

>gi\|385718955\|gb\|AFI71894.1\| cellulose synthase 3 [Paeonia lactiflora]	Back alignment and taxonomy information

>gi\|307557871\|gb\|ACU87559.2\| cellulose synthase [Leucaena leucocephala]	Back alignment and taxonomy information

>gi\|162955786\|gb\|ABY25277.1\| cellulose synthase [Eucalyptus grandis]	Back alignment and taxonomy information

>gi\|162955780\|gb\|ABY25274.1\| cellulose synthase [Eucalyptus grandis]	Back alignment and taxonomy information

>gi\|340343837\|gb\|AEK31218.1\| cellulose synthase A [Eucalyptus camaldulensis]	Back alignment and taxonomy information

>gi\|347953823\|gb\|AEP33537.1\| cellulose synthase catalytic subunit [Gossypium laxum]	Back alignment and taxonomy information

>gi\|347953853\|gb\|AEP33552.1\| cellulose synthase catalytic subunit [Gossypium armourianum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		811
TAIR\|locus:2156789		1065	CEV1 "CONSTITUTIVE EXPRESSION	0.929	0.707	0.783	0.0
TAIR\|locus:2127776		1081	CESA1 "cellulose synthase 1" [	0.917	0.688	0.622	1.1e-261
TAIR\|locus:2040080		1065	CESA10 "cellulose synthase 10"	0.760	0.579	0.647	2.1e-248
TAIR\|locus:2178935		1026	IRX3 "IRREGULAR XYLEM 3" [Arab	0.500	0.395	0.789	2.7e-243
TAIR\|locus:2178193		1069	CESA5 "cellulose synthase 5" [	0.618	0.469	0.666	1.8e-242
TAIR\|locus:2172457		1049	CESA4 "cellulose synthase A4"	0.623	0.482	0.652	3e-238
TAIR\|locus:2136308		1084	CESA2 "cellulose synthase A2"	0.914	0.684	0.579	1.6e-237
TAIR\|locus:2176090		1084	CESA6 "cellulose synthase 6" [	0.914	0.684	0.583	1.6e-235
TAIR\|locus:2052576		1088	CESA9 "cellulose synthase A9"	0.914	0.681	0.563	5.3e-230
TAIR\|locus:2124167		985	IRX1 "IRREGULAR XYLEM 1" [Arab	0.690	0.568	0.646	1.7e-214

TAIR\|locus:2156789 CEV1 "CONSTITUTIVE EXPRESSION OF VSP 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3161 (1117.8 bits), Expect = 0., P = 0.
 Identities = 602/768 (78%), Positives = 646/768 (84%)

Query:     1 MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQ 60
             MESEGET  K +KN+  Q CQIC DNVGKTVDG+ FVACD+C+FPVCRPCYEYERKDGNQ
Sbjct:     1 MESEGETAGKPMKNIVPQTCQICSDNVGKTVDGDRFVACDICSFPVCRPCYEYERKDGNQ 60

Query:    61 SCPQCKTRYKKHKGSPAILXXXXXXXXXXXXXXXFNYSSENQNQKQKISERMLSWHMRYG 120
             SCPQCKTRYK+ KGSPAI                FNY      QK+KISERML WH+  G
Sbjct:    61 SCPQCKTRYKRLKGSPAIPGDKDEDGLADEGTVEFNYP-----QKEKISERMLGWHLTRG 115

Query:   121 QGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDIN 180
             +GE+   P+YD EVSHNH+PRLT  Q+ SGE SAASPE LS++S   G GKR+ YS D+N
Sbjct:   116 KGEEMGEPQYDKEVSHNHLPRLTSRQDTSGEFSAASPERLSVSSTIAG-GKRLPYSSDVN 174

Query:   181 QSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDAST 240
             QSP+ R+VDPV      GLGNVAWKERVDGWKMKQEKN  P+ST QA SERGG DIDAST
Sbjct:   175 QSPNRRIVDPV------GLGNVAWKERVDGWKMKQEKNTGPVST-QAASERGGVDIDAST 227

Query:   241 DVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVXXXXXXXXXXXXXXXXKNPVHNAIAL 300
             D+L D++LLNDEARQPLSRKV IPSSRINPYRMV                 NPV NA AL
Sbjct:   228 DILADEALLNDEARQPLSRKVSIPSSRINPYRMVIMLRLVILCLFLHYRITNPVPNAFAL 287

Query:   301 WLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDP 360
             WL+SVICEIWFA+SWI DQFPKW PVNRETYLDRL+LRY+REGEPSQLAAVDIFVSTVDP
Sbjct:   288 WLVSVICEIWFALSWILDQFPKWFPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDP 347

Query:   361 LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYN 420
             LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML+FE+L+ETSEFARKWVPFCKKY+
Sbjct:   348 LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLAETSEFARKWVPFCKKYS 407

Query:   421 IEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVM 480
             IEPRAPEWYFA KIDYLKDKVQ SFVKDRRAMKREYEEFKIRIN LV+KA K PEEGWVM
Sbjct:   408 IEPRAPEWYFAAKIDYLKDKVQTSFVKDRRAMKREYEEFKIRINALVSKALKCPEEGWVM 467

Query:   481 QDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNA 540
             QDGTPWPGNNTRDHPGMIQVFLG+NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNA
Sbjct:   468 QDGTPWPGNNTRDHPGMIQVFLGQNGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNA 527

Query:   541 LVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRN 600
             LVRVSAVLTNGPF+LNLDCDHYINNSKALREAMCF+MDPNLGK VCYVQFPQRFDGID+N
Sbjct:   528 LVRVSAVLTNGPFILNLDCDHYINNSKALREAMCFLMDPNLGKQVCYVQFPQRFDGIDKN 587

Query:   601 DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFX 660
             DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPP+K KH+KP LLS L  
Sbjct:   588 DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKVKHKKPSLLSKLCG 647

Query:   661 XXXXXXXXXXXXXXXXXXXXXHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKR 720
                                  H D TVP+F+L+DIEEGVEGAGFDDEK+LLMSQMSLEKR
Sbjct:   648 GSRKKNSKAKKESDKKKSGR-HTDSTVPVFNLDDIEEGVEGAGFDDEKALLMSQMSLEKR 706

Query:   721 FGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSE 768
             FGQSAVFVASTLMENGGVP SAT E LLKEAIHVISCGYEDK++WG E
Sbjct:   707 FGQSAVFVASTLMENGGVPPSATPENLLKEAIHVISCGYEDKSDWGME 754

GO:0005886 "plasma membrane" evidence=ISM;IDA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0016759 "cellulose synthase activity" evidence=ISS;IMP

GO:0016760 "cellulose synthase (UDP-forming) activity" evidence=IEA

GO:0030244 "cellulose biosynthetic process" evidence=IEA;IMP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0009833 "primary cell wall biogenesis" evidence=IMP;TAS

GO:0009809 "lignin biosynthetic process" evidence=IGI

GO:0043255 "regulation of carbohydrate biosynthetic process" evidence=IGI

GO:0006952 "defense response" evidence=TAS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0030243 "cellulose metabolic process" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR\|locus:2127776 CESA1 "cellulose synthase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2040080 CESA10 "cellulose synthase 10" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2178935 IRX3 "IRREGULAR XYLEM 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2178193 CESA5 "cellulose synthase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2172457 CESA4 "cellulose synthase A4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2136308 CESA2 "cellulose synthase A2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2176090 CESA6 "cellulose synthase 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2052576 CESA9 "cellulose synthase A9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2124167 IRX1 "IRREGULAR XYLEM 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A2XN66	CESA2_ORYSI	2, ., 4, ., 1, ., 1, 2	0.7606	0.9198	0.6952	N/A	no
Q941L0	CESA3_ARATH	2, ., 4, ., 1, ., 1, 2	0.8283	0.9309	0.7089	yes	no
Q84ZN6	CESA8_ORYSJ	2, ., 4, ., 1, ., 1, 2	0.7722	0.9247	0.6938	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	0.963
4th Layer	2.4.1.12	0.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_I1792	cellulose synthase (EC-2.4.1.12) (1081 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	ACT9	SubName- Full=Actin (Putative uncharacterized protein);; Actins are highly conserved proteins t [...] (378 aa)	•	0.686
	MYB103	hypothetical protein (110 aa)	•	0.510
	grail3.0064002701	SubName- Full=Putative uncharacterized protein; (382 aa)	•	0.510
	lac1	SubName- Full=Laccase; EC=1.10.3.2; Flags- Fragment; (557 aa)	•	0.510
	lac90	SubName- Full=Laccase; EC=1.10.3.2; Flags- Precursor; (574 aa)	•	0.510
	lac110	SubName- Full=Laccase; EC=1.10.3.2; (580 aa)	•	0.510
	lac2	SubName- Full=Laccase; EC=1.10.3.2; Flags- Fragment; (556 aa)	•	0.510
	4CL1	4-coumarate-coa ligase (545 aa)	•	0.510
	CCR	SubName- Full=Cinnamoyl CoA reductase; (339 aa)	•	0.508
	PAL2	SubName- Full=Phenylalanine ammonia-lyase; (712 aa)	•	0.507

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		811
PLN02638		1079	PLN02638, PLN02638, cellulose synthase A (UDP-form	0.0
PLN02400		1085	PLN02400, PLN02400, cellulose synthase	0.0
PLN02436		1094	PLN02436, PLN02436, cellulose synthase A	0.0
PLN02189		1040	PLN02189, PLN02189, cellulose synthase	0.0
PLN02915		1044	PLN02915, PLN02915, cellulose synthase A [UDP-form	0.0
PLN02195		977	PLN02195, PLN02195, cellulose synthase A	0.0
pfam03552		716	pfam03552, Cellulose_synt, Cellulose synthase	0.0
PLN02248		1135	PLN02248, PLN02248, cellulose synthase-like protei	0.0
PLN02190		756	PLN02190, PLN02190, cellulose synthase-like protei	2e-97
PLN02893		734	PLN02893, PLN02893, Cellulose synthase-like protei	3e-97
cd06421		234	cd06421, CESA_CelA_like, CESA_CelA_like are involv	2e-14
PLN02195		977	PLN02195, PLN02195, cellulose synthase A	3e-10
TIGR03030		713	TIGR03030, CelA, cellulose synthase catalytic subu	4e-08
TIGR03030		713	TIGR03030, CelA, cellulose synthase catalytic subu	4e-08
cd06423		180	cd06423, CESA_like, CESA_like is the cellulose syn	1e-05
cd06421		234	cd06421, CESA_CelA_like, CESA_CelA_like are involv	5e-05
pfam14446		55	pfam14446, Prok-RING_1, Prokaryotic RING finger fa	3e-04
COG1215		439	COG1215, COG1215, Glycosyltransferases, probably i	0.001
PRK11498		852	PRK11498, bcsA, cellulose synthase catalytic subun	0.002
PLN02248		1135	PLN02248, PLN02248, cellulose synthase-like protei	0.004

>gnl\|CDD\|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic subunit	Back alignment and domain information

 Score = 1611 bits (4173), Expect = 0.0
 Identities = 698/769 (90%), Positives = 729/769 (94%), Gaps = 2/769 (0%)

Query: 1   MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQ 60
           MESEGETG K +K+ GGQVCQICGDNVGKTVDG PFVACDVCAFPVCRPCYEYERKDGNQ
Sbjct: 1   MESEGETGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQ 60

Query: 61  SCPQCKTRYKKHKGSPAILGDREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYG 120
           SCPQCKT+YK+HKGSPAILGD EEDGDADDGASDFNY S NQ+QKQKI+ERMLSW M  G
Sbjct: 61  SCPQCKTKYKRHKGSPAILGDEEEDGDADDGASDFNYPSSNQDQKQKIAERMLSWRMNSG 120

Query: 121 QGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDIN 180
           +GED  AP YD EVSHNHIP LT GQ VSGELSAASPE LSMASPG G GKRI Y+ D+N
Sbjct: 121 RGEDVGAPNYDKEVSHNHIPLLTNGQSVSGELSAASPERLSMASPGAG-GKRIPYASDVN 179

Query: 181 QSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSE-RGGGDIDAS 239
           QSP+IRVVDPVREFGSPGLGNVAWKERVDGWKMKQ+KN +PMSTG A SE RGGGDIDAS
Sbjct: 180 QSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDIDAS 239

Query: 240 TDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIA 299
           TDVL+DD+LLNDEARQPLSRKV IPSSRINPYRMVI LRL+IL IFL+YRI NPV NA A
Sbjct: 240 TDVLMDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYA 299

Query: 300 LWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVD 359
           LWLISVICEIWFA+SWI DQFPKWLPVNRETYLDRL+LRY+REGEPSQLAAVDIFVSTVD
Sbjct: 300 LWLISVICEIWFALSWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVD 359

Query: 360 PLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKY 419
           PLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKY
Sbjct: 360 PLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKY 419

Query: 420 NIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWV 479
           NIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFK+RINGLVAKAQK+PEEGW+
Sbjct: 420 NIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWI 479

Query: 480 MQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMN 539
           MQDGTPWPGNNTRDHPGMIQVFLG +GGLD EGNELPRLVYVSREKRPGFQHHKKAGAMN
Sbjct: 480 MQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMN 539

Query: 540 ALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDR 599
           ALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCF+MDPNLGK VCYVQFPQRFDGIDR
Sbjct: 540 ALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDR 599

Query: 600 NDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLF 659
           NDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPP+KPKH+KPG LSSL 
Sbjct: 600 NDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKPKHKKPGFLSSLC 659

Query: 660 GGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEK 719
           GGSRKK+SKSSKKGSDKKKS KHVDPTVP+F+LEDIEEGVEGAGFDDEKSLLMSQMSLEK
Sbjct: 660 GGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDEKSLLMSQMSLEK 719

Query: 720 RFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSE 768
           RFGQSAVFVASTLMENGGVPQSAT E+LLKEAIHVISCGYEDKT+WGSE
Sbjct: 720 RFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSE 768

Length = 1079

>gnl\|CDD\|215224 PLN02400, PLN02400, cellulose synthase	Back alignment and domain information

>gnl\|CDD\|215239 PLN02436, PLN02436, cellulose synthase A	Back alignment and domain information

>gnl\|CDD\|215121 PLN02189, PLN02189, cellulose synthase	Back alignment and domain information

>gnl\|CDD\|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic subunit	Back alignment and domain information

>gnl\|CDD\|215124 PLN02195, PLN02195, cellulose synthase A	Back alignment and domain information

>gnl\|CDD\|217611 pfam03552, Cellulose_synt, Cellulose synthase	Back alignment and domain information

>gnl\|CDD\|215138 PLN02248, PLN02248, cellulose synthase-like protein	Back alignment and domain information

>gnl\|CDD\|215122 PLN02190, PLN02190, cellulose synthase-like protein	Back alignment and domain information

>gnl\|CDD\|215483 PLN02893, PLN02893, Cellulose synthase-like protein	Back alignment and domain information

>gnl\|CDD\|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose	Back alignment and domain information

>gnl\|CDD\|215124 PLN02195, PLN02195, cellulose synthase A	Back alignment and domain information

>gnl\|CDD\|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming)	Back alignment and domain information

>gnl\|CDD\|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming)	Back alignment and domain information

>gnl\|CDD\|133045 cd06423, CESA_like, CESA_like is the cellulose synthase superfamily	Back alignment and domain information

>gnl\|CDD\|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose	Back alignment and domain information

>gnl\|CDD\|222758 pfam14446, Prok-RING_1, Prokaryotic RING finger family 1	Back alignment and domain information

>gnl\|CDD\|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|236918 PRK11498, bcsA, cellulose synthase catalytic subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|215138 PLN02248, PLN02248, cellulose synthase-like protein	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		811
PLN02638		1079	cellulose synthase A (UDP-forming), catalytic subu	100.0
PLN02400		1085	cellulose synthase	100.0
PLN02436		1094	cellulose synthase A	100.0
PLN02915		1044	cellulose synthase A [UDP-forming], catalytic subu	100.0
PLN02189		1040	cellulose synthase	100.0
PLN02195		977	cellulose synthase A	100.0
PLN02248		1135	cellulose synthase-like protein	100.0
PF03552		720	Cellulose_synt: Cellulose synthase; InterPro: IPR0	100.0
PLN02190		756	cellulose synthase-like protein	100.0
PLN02893		734	Cellulose synthase-like protein	100.0
PF14569		80	zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.	100.0
TIGR03030		713	CelA cellulose synthase catalytic subunit (UDP-for	100.0
PRK11498		852	bcsA cellulose synthase catalytic subunit; Provisi	100.0
cd04191		254	Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon	99.88
PRK05454		691	glucosyltransferase MdoH; Provisional	99.86
COG1215		439	Glycosyltransferases, probably involved in cell wa	99.76
cd06421		234	CESA_CelA_like CESA_CelA_like are involved in the	99.67
PRK14583		444	hmsR N-glycosyltransferase; Provisional	99.64
cd06437		232	CESA_CaSu_A2 Cellulose synthase catalytic subunit	99.6
TIGR03111		439	glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0	99.54
PRK11204		420	N-glycosyltransferase; Provisional	99.54
cd06427		241	CESA_like_2 CESA_like_2 is a member of the cellulo	99.53
cd06436		191	GlcNAc-1-P_transferase N-acetyl-glucosamine transf	99.5
cd06435		236	CESA_NdvC_like NdvC_like proteins in this family a	99.49
PF13641		228	Glyco_tranf_2_3: Glycosyltransferase like family 2	99.47
PRK14716		504	bacteriophage N4 adsorption protein B; Provisional	99.45
TIGR03472		373	HpnI hopanoid biosynthesis associated glycosyl tra	99.38
cd06438		183	EpsO_like EpsO protein participates in the methano	99.36
PRK11234		727	nfrB bacteriophage N4 adsorption protein B; Provis	99.35
cd04192		229	GT_2_like_e Subfamily of Glycosyltransferase Famil	99.29
cd06439		251	CESA_like_1 CESA_like_1 is a member of the cellulo	99.27
cd02520		196	Glucosylceramide_synthase Glucosylceramide synthas	99.24
cd06434		235	GT2_HAS Hyaluronan synthases catalyze polymerizati	99.22
cd04190		244	Chitin_synth_C C-terminal domain of Chitin Synthas	99.12
PRK15489		703	nfrB bacteriophage N4 adsorption protein B; Provis	99.11
TIGR03469		384	HonB hopene-associated glycosyltransferase HpnB. T	99.1
cd04196		214	GT_2_like_d Subfamily of Glycosyltransferase Famil	99.01
cd04184		202	GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot	99.01
cd04195		201	GT2_AmsE_like GT2_AmsE_like is involved in exopoly	98.97
PF14570		48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	98.97
PF00535		169	Glycos_transf_2: Glycosyl transferase family 2; In	98.97
cd06423		180	CESA_like CESA_like is the cellulose synthase supe	98.96
cd02525		249	Succinoglycan_BP_ExoA ExoA is involved in the bios	98.88
PLN02726		243	dolichyl-phosphate beta-D-mannosyltransferase	98.81
cd06433		202	GT_2_WfgS_like WfgS and WfeV are involved in O-ant	98.75
cd06420		182	GT2_Chondriotin_Pol_N N-terminal domain of Chondro	98.74
cd06442		224	DPM1_like DPM1_like represents putative enzymes si	98.72
cd04179		185	DPM_DPG-synthase_like DPM_DPG-synthase_like is a m	98.7
cd02522		221	GT_2_like_a GT_2_like_a represents a glycosyltrans	98.63
cd04186		166	GT_2_like_c Subfamily of Glycosyltransferase Famil	98.6
cd04187		181	DPM1_like_bac Bacterial DPM1_like enzymes are rela	98.54
cd02510		299	pp-GalNAc-T pp-GalNAc-T initiates the formation of	98.52
cd04185		202	GT_2_like_b Subfamily of Glycosyltransferase Famil	98.49
cd04188		211	DPG_synthase DPG_synthase is involved in protein N	98.44
PTZ00260		333	dolichyl-phosphate beta-glucosyltransferase; Provi	98.4
cd06913		219	beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran	98.38
cd02526		237	GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr	98.31
PRK10073		328	putative glycosyl transferase; Provisional	98.3
PRK13915		306	putative glucosyl-3-phosphoglycerate synthase; Pro	98.28
PRK10018		279	putative glycosyl transferase; Provisional	98.25
cd00761		156	Glyco_tranf_GTA_type Glycosyltransferase family A	98.09
COG2943		736	MdoH Membrane glycosyltransferase [Cell envelope b	97.91
PRK10063		248	putative glycosyl transferase; Provisional	97.72
TIGR01556		281	rhamnosyltran L-rhamnosyltransferase. Rhamnolipids	97.69
PF13632		193	Glyco_trans_2_3: Glycosyl transferase family group	97.65
PF10111		281	Glyco_tranf_2_2: Glycosyltransferase like family 2	97.51
PF13506		175	Glyco_transf_21: Glycosyl transferase family 21	97.5
PRK10714		325	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi	97.46
COG0463		291	WcaA Glycosyltransferases involved in cell wall bi	97.38
cd02511		229	Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4	97.13
cd02514		334	GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an es	96.33
COG1216		305	Predicted glycosyltransferases [General function p	96.25
COG5175		480	MOT2 Transcriptional repressor [Transcription]	95.81
TIGR00570		309	cdk7 CDK-activating kinase assembly factor MAT1. A	95.34
PF14446		54	Prok-RING_1: Prokaryotic RING finger family 1	94.19
PF03142		527	Chitin_synth_2: Chitin synthase; InterPro: IPR0048	89.57
cd00162		45	RING RING-finger (Really Interesting New Gene) dom	89.18
KOG2978		238	consensus Dolichol-phosphate mannosyltransferase [	88.77
PF05290		140	Baculo_IE-1: Baculovirus immediate-early protein (	87.22

>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit	Back alignment and domain information

Probab=100.00  E-value=1.4e-251  Score=2159.30  Aligned_cols=798  Identities=87%  Similarity=1.387  Sum_probs=722.6

Q ss_pred             CCCCCCCCCccccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCcccccccCCCCcccC
Q 003541            1 MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILG   80 (811)
Q Consensus         1 ~~~~~~~~~k~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~ykr~kg~prv~g   80 (811)
                      ||+.|+.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|
T Consensus         1 ~~~~~~~~~k~~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~g   80 (1079)
T PLN02638          1 MESEGETGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILG   80 (1079)
T ss_pred             CCCCCCCCCCCccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCccccCCCCCcccCCccccCCCCCCCcccc
Q 003541           81 DREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHL  160 (811)
Q Consensus        81 d~~~e~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (811)
                      |||||+|+||+||||+|..+++...++++|+|++|+|+||++.|.+++.++++.+++++|+|++||.+++|+++++++|+
T Consensus        81 Deeed~~~dDle~ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  160 (1079)
T PLN02638         81 DEEEDGDADDGASDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAPNYDKEVSHNHIPLLTNGQSVSGELSAASPERL  160 (1079)
T ss_pred             cccccCcchhhhhhhccccccccchhHHHHHHhhhhcccCcCcccccccccccCCCCCCcccccCccccCccCCCCCccc
Confidence            95555558999999999654555567889999999999999998888788877556788999999988999997766665


Q ss_pred             ccCCCCCCCCCccccCCCCCCCCCccccCCCCCCCCCCcccccccchhhhhhhhccccccccCCCCccccCCCC-CCCCC
Q 003541          161 SMASPGVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGG-DIDAS  239 (811)
Q Consensus       161 ~~~~~~~~~~~~vp~~d~~~~~~~~~~~~~~~~~~~yg~g~~~wk~~~~~wk~~~~~~~~~~~~~~~~~~~~~~-~~~~~  239 (811)
                      .++++.+ .||||||+|+.+.+.++|.|||+||+++||||||+||||||+||+||+|++.++.+.....+++|+ ++++.
T Consensus       161 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~~~~~~~  239 (1079)
T PLN02638        161 SMASPGA-GGKRIPYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDIDAS  239 (1079)
T ss_pred             cccCccc-cCCcccccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCcCCCCCc
Confidence            5555543 689999999777778999999999999999999999999999999999887777665544565543 33221


Q ss_pred             CCCccCCcccccccCCCceeeeccCCCCCchhHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhh
Q 003541          240 TDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQ  319 (811)
Q Consensus       240 ~~~~~~~~~~~~~~~~pL~rk~~i~~~~~~~yR~livl~lv~l~~yL~wRi~~~~~~a~~lWl~~~i~Eiwfa~swlL~q  319 (811)
                      .+.+++|+++++++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++|+||+||+|+|+|+|
T Consensus       240 ~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~Wll~q  319 (1079)
T PLN02638        240 TDVLMDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALSWILDQ  319 (1079)
T ss_pred             cccccccccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence            12235788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccchhhhhhhhhhhcCCCCCCCCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhH
Q 003541          320 FPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF  399 (811)
Q Consensus       320 ~~kw~Pv~R~t~~drL~~r~e~~~~~~~LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf  399 (811)
                      ++||+||+|.||++||++||++++++++||+|||||||+||.||||++|+||||||||+|||++||+|||||||+++|||
T Consensus       320 ~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf  399 (1079)
T PLN02638        320 FPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF  399 (1079)
T ss_pred             cccccccccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHH
Confidence            99999999999999999999987778899999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhHHHhhhhHhhHHhhCCCCCCchhhhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccc
Q 003541          400 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWV  479 (811)
Q Consensus       400 ~aL~Eaa~FAk~WVPFCkK~~IepRaPe~YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~  479 (811)
                      |||+|||+||++||||||||+|||||||+||+++.++++++++|+|++|||+|||||||||+|||+|+++++++|++||.
T Consensus       400 ~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p~~~~~  479 (1079)
T PLN02638        400 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWI  479 (1079)
T ss_pred             HHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCCcceeeeccCCCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecC
Q 003541          480 MQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDC  559 (811)
Q Consensus       480 m~dgt~wpg~~~rdHp~iIqV~l~~~G~~d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDc  559 (811)
                      |+||++|||++++|||+||||+++++|+.|.+|++||+|||||||||||++||+||||||+||||||+||||||||||||
T Consensus       480 m~dgt~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDC  559 (1079)
T PLN02638        480 MQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDC  559 (1079)
T ss_pred             ccCCccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHhhhhcCCCCCcceEEEccCccccCCCCcccchhhhhHHHhhhhccccCCCcccccccchhhchhhhc
Q 003541          560 DHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY  639 (811)
Q Consensus       560 Dhyinnp~~Lr~amcfflDp~~g~~vafVQ~PQ~F~nid~~D~y~n~n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~ALy  639 (811)
                      |||+|||++||+||||||||+.|+++|||||||+|+|++++|||+|+++|||+++|+|+||+|||+||||||+|||+|||
T Consensus       560 DmYiNns~alr~AMCf~lDp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALY  639 (1079)
T PLN02638        560 DHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY  639 (1079)
T ss_pred             CcccCchHHHHHhhhhhcCcccCCeeEEecCCcccCCCCCCCcccccceeeeccccccccccCCccccccCcceeehhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCcccccccCCCcCCC-CCCCCCCCccCCCCCCCCCCCccccchhhccccCCCCchhhHHhhhhhHHH
Q 003541          640 GYEPPLKPKHRKPGLLSSLFGGSRKKNS-KSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLE  718 (811)
Q Consensus       640 G~~Pp~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  718 (811)
                      |++||...++....+++ |||++.+++. +.+.+...++...++.+.+.+++++++++++.++..++++++.+++++.++
T Consensus       640 G~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  718 (1079)
T PLN02638        640 GYEPPIKPKHKKPGFLS-SLCGGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDEKSLLMSQMSLE  718 (1079)
T ss_pred             CcCCccccccccccccc-ccccccccccccccchhhccccccccccccccccccccccccccccccchhhhhhhhhhhhh
Confidence            99999765432222222 4555533322 111111111122234455667888888887766655667888889999999


Q ss_pred             hhcCCcHHHHhhhhhhcCCCCCCCChHHHHHHHHHhhhcccCCCCCCCCcceeecccceeeccccchhheeecccceeee
Q 003541          719 KRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEFLLQTPIFVSCSADRMDLWFCYGRYSYRIQ  798 (811)
Q Consensus       719 k~FG~S~~fi~S~~~e~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~eVGWiY~i~~s~t~d~~~~~~~~~~~~~~~~  798 (811)
                      ++||+|++||+|+++++++.++..+++++|+||++|+||+||++|+||+||||   |||||||| +.|||+||.+|||++
T Consensus       719 ~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw---~YGSvTED-v~TG~rLH~rGWrSv  794 (1079)
T PLN02638        719 KRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGW---IYGSVTED-ILTGFKMHARGWRSI  794 (1079)
T ss_pred             hhccccHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhccCCCccCCchhhhcCe---eecceecH-HHHHHHHHcCCCcEE
Confidence            99999999999999999999888899999999999999999999999999999   78899987 999999999999999


Q ss_pred             eccchh
Q 003541          799 DACPWL  804 (811)
Q Consensus       799 ~~~~~~  804 (811)
                      ||.|-+
T Consensus       795 Y~~P~r  800 (1079)
T PLN02638        795 YCMPKR  800 (1079)
T ss_pred             ecCCCc
Confidence            999865

>PLN02400 cellulose synthase	Back alignment and domain information

>PLN02436 cellulose synthase A	Back alignment and domain information

>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit	Back alignment and domain information

>PLN02189 cellulose synthase	Back alignment and domain information

>PLN02195 cellulose synthase A	Back alignment and domain information

>PLN02248 cellulose synthase-like protein	Back alignment and domain information

>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals	Back alignment and domain information

>PLN02190 cellulose synthase-like protein	Back alignment and domain information

>PLN02893 Cellulose synthase-like protein	Back alignment and domain information

>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A	Back alignment and domain information

>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming)	Back alignment and domain information

>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional	Back alignment and domain information

>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan	Back alignment and domain information

>PRK05454 glucosyltransferase MdoH; Provisional	Back alignment and domain information

>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose	Back alignment and domain information

>PRK14583 hmsR N-glycosyltransferase; Provisional	Back alignment and domain information

>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex	Back alignment and domain information

>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111	Back alignment and domain information

>PRK11204 N-glycosyltransferase; Provisional	Back alignment and domain information

>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily	Back alignment and domain information

>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine	Back alignment and domain information

>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase	Back alignment and domain information

>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A	Back alignment and domain information

>PRK14716 bacteriophage N4 adsorption protein B; Provisional	Back alignment and domain information

>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI	Back alignment and domain information

>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis	Back alignment and domain information

>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional	Back alignment and domain information

>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function	Back alignment and domain information

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily	Back alignment and domain information

>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis	Back alignment and domain information

>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan	Back alignment and domain information

>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin	Back alignment and domain information

>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional	Back alignment and domain information

>TIGR03469 HonB hopene-associated glycosyltransferase HpnB	Back alignment and domain information

>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function	Back alignment and domain information

>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis	Back alignment and domain information

>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis	Back alignment and domain information

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B	Back alignment and domain information

>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>cd06423 CESA_like CESA_like is the cellulose synthase superfamily	Back alignment and domain information

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan	Back alignment and domain information

>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase	Back alignment and domain information

>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis	Back alignment and domain information

>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase	Back alignment and domain information

>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1	Back alignment and domain information

>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	Back alignment and domain information

>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function	Back alignment and domain information

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function	Back alignment and domain information

>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1	Back alignment and domain information

>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans	Back alignment and domain information

>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function	Back alignment and domain information

>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation	Back alignment and domain information

>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional	Back alignment and domain information

>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine	Back alignment and domain information

>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase	Back alignment and domain information

>PRK10073 putative glycosyl transferase; Provisional	Back alignment and domain information

>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional	Back alignment and domain information

>PRK10018 putative glycosyl transferase; Provisional	Back alignment and domain information

>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	Back alignment and domain information

>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK10063 putative glycosyl transferase; Provisional	Back alignment and domain information

>TIGR01556 rhamnosyltran L-rhamnosyltransferase	Back alignment and domain information

>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2	Back alignment and domain information

>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ]	Back alignment and domain information

>PF13506 Glyco_transf_21: Glycosyl transferase family 21	Back alignment and domain information

>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional	Back alignment and domain information

>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	Back alignment and domain information

>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides	Back alignment and domain information

>COG1216 Predicted glycosyltransferases [General function prediction only]	Back alignment and domain information

>COG5175 MOT2 Transcriptional repressor [Transcription]	Back alignment and domain information

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1	Back alignment and domain information

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1	Back alignment and domain information

>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2	Back alignment and domain information

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Back alignment and domain information

>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]	Back alignment and domain information

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		811
1weo_A		93	Solution Structure Of Ring-Finger In The Catalytic		2e-24
4hg6_A		802	Structure Of A Cellulose Synthase - Cellulose Trans		6e-05

>pdb|1WEO|A Chain A, Solution Structure Of Ring-Finger In The Catalytic Subunit (Irx3) Of Cellulose Synthase Length = 93

Back alignment and structure

Iteration: 1

Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 47/76 (61%), Positives = 61/76 (80%) Query: 3 SEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSC 62 S G +G K +KN+ GQ C+ICGD +G TV+G+ FVAC+ C FP CRPCYEYER++G Q+C Sbjct: 2 SSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNC 61 Query: 63 PQCKTRYKKHKGSPAI 78 PQCKTRYK+ +GSP + Sbjct: 62 PQCKTRYKRLRGSPRV 77

PyMOL of 1weo

>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate Length = 802

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		811
1weo_A		93	Cellulose synthase, catalytic subunit (IRX3); stru	8e-41
1e4u_A		78	Transcriptional repressor NOT4; gene regulation, t	7e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1 Length = 93	Back alignment and structure

 Score =  143 bits (362), Expect = 8e-41
 Identities = 51/91 (56%), Positives = 68/91 (74%)

Query: 3  SEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSC 62
          S G +G K +KN+ GQ C+ICGD +G TV+G+ FVAC+ C FP CRPCYEYER++G Q+C
Sbjct: 2  SSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNC 61

Query: 63 PQCKTRYKKHKGSPAILGDREEDGDADDGAS 93
          PQCKTRYK+ +GSP + GD +E+      +S
Sbjct: 62 PQCKTRYKRLRGSPRVEGDEDEEDIDSGPSS 92

PyMOL of 1weo

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 47.2 bits (111), Expect = 2e-05
 Identities = 80/599 (13%), Positives = 160/599 (26%), Gaps = 191/599 (31%)

Query: 319 QFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAV 378
           Q+   L V  + ++D    +  ++   S L+  +I       +     V+    L    +
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI----DHIIMSKDAVSGTLRLFWTLL 72

Query: 379 DYPVDKVSCYVSDDGAAMLTFEALSETSEF-ARKWVPFCKKYNIEPRAPEWYFAQKIDYL 437
               + V  +V +          L    +F         K    +P      + ++ D L
Sbjct: 73  SKQEEMVQKFVEE---------VLRINYKFLMSPI----KTEQRQPSMMTRMYIEQRDRL 119

Query: 438 KDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGM 497
            +  Q  F K    + R     K+R   L     ++     V+               G+
Sbjct: 120 YNDNQV-FAK--YNVSRLQPYLKLR-QAL----LELRPAKNVLI------------D-GV 158

Query: 498 IQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNAL--VRVSAVLTNGPFLL 555
                    G                    G    K   A++     +V   +    F L
Sbjct: 159 --------LGS-------------------G----KTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 556 NLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQ-FPQRFDGIDRNDR-------YAN-- 605
           NL   +       + + + + +DPN      +      R   I    R       Y N  
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 606 ---RN----TVF--FDINLRGL---------DGIQGPVYVGTGCVFNRTALYGYE----- 642
               N      +  F+++ + L         D +            +   L   E     
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 643 -----------PPLKPKHRKPGLLSSLFGGSRK---------KNSKSSKKGSDKKKSSKH 682
                      P        P    S+   S +         K+    K  +  + S   
Sbjct: 308 LKYLDCRPQDLPREVLTT-NP-RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 683 VDPT--------VPIFSLED--IEEGV------EGAGFDDEKSL--LMSQMSLEKRFGQS 724
           ++P         + +F      I   +      +    D    +  L     +EK+  +S
Sbjct: 366 LEPAEYRKMFDRLSVFP-PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424

Query: 725 AVFVAS-----------------TLMENGGVPQSATHETLLKEAI----------HVISC 757
            + + S                 +++++  +P++   + L+   +          H+ + 
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 758 GYEDKTEWGSE-FL----LQTPIFVSCSA---------DRMDLWFCYGRYSYRIQDACP 802
            + ++       FL    L+  I    +A             L F Y  Y   I D  P
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-YKPY---ICDNDP 539

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 72/514 (14%), Positives = 147/514 (28%), Gaps = 146/514 (28%)

Query: 241 DVLVDD-----SLLNDEARQPLSRKVPIPSSRINPYRMV-IFLRLIILGIFLYYRIKNPV 294
           +VL  +     S +  E RQP          R   Y    +F +  +  +  Y +++  +
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144

Query: 295 -----HNAIAL---------WLI-------SVICEIWFAISWI---FDQFPKWLPVNRET 330
                   + +         W+         V C++ F I W+       P+ +    + 
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 331 YLDRLSLRYEREGEPSQ---LAAVDIFVSTVDPLKEPPLVTANTVLSIL----------A 377
            L ++   +    + S    L    I       LK  P       L +L          A
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC---LLVLLNVQNAKAWNA 261

Query: 378 VDYPVDKVSC---------YVSDDGAAMLTFE----------ALSETSEFARKWV----- 413
            +     +SC          V+D  +A  T               E      K++     
Sbjct: 262 FN-----LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 414 --P--FCKKYNIEPRA----PE--------W-YFAQ-KIDYLKDKVQPSF-VKDRRAMKR 454
             P          PR      E        W  +     D L   ++ S  V +    ++
Sbjct: 317 DLPREVLT---TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 455 EYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNE 514
            ++   +        +  IP    ++     W  +  +    ++   L +   ++ +  E
Sbjct: 374 MFDRLSV-----FPPSAHIPTI--LLS--LIW-FDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 515 ----LPRLVYVSREKRPG-FQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKAL 569
               +P +    + K    +  H+    ++         ++      L  D Y  +    
Sbjct: 424 STISIPSIYLELKVKLENEYALHRS--IVDHYNIPKTFDSDDLIPPYL--DQYFYS---- 475

Query: 570 REAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDG---IQGPVY 626
                     ++G H            I+  +R      VF D   R L+         +
Sbjct: 476 ----------HIGHH---------LKNIEHPERMTLFRMVFLD--FRFLEQKIRHDSTAW 514

Query: 627 VGTGCVFNR-TALYGYEPPLKPKHRKP-GLLSSL 658
             +G + N    L  Y+P +     K   L++++
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		811
d1weoa_		93	g.44.1.1 (A:) Cellulose synthase A catalytic subun	7e-48
d1g25a_		65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	5e-05
d1weva_		88	g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu	0.002
d1mm2a_		61	g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens	0.004

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 93	Back information, alignment and structure


class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  162 bits (411), Expect = 7e-48
 Identities = 54/92 (58%), Positives = 70/92 (76%), Gaps = 1/92 (1%)

Query: 3  SEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSC 62
          S G +G K +KN+ GQ C+ICGD +G TV+G+ FVAC+ C FP CRPCYEYER++G Q+C
Sbjct: 2  SSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNC 61

Query: 63 PQCKTRYKKHKGSPAILGDREEDGDADDGASD 94
          PQCKTRYK+ +GSP + GD +E+ D D G S 
Sbjct: 62 PQCKTRYKRLRGSPRVEGDEDEE-DIDSGPSS 92

PyMOL of d1weoa_

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65	Back information, alignment and structure

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88	Back information, alignment and structure

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		811
d1weoa_		93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	100.0
d1xhba2		328	Polypeptide N-acetylgalactosaminyltransferase 1, N	99.21
d1qg8a_		255	Spore coat polysaccharide biosynthesis protein Sps	98.91
d1omza_		265	Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga	98.49
d1g25a_		65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	92.64
d1ur6b_		52	Not-4 N-terminal RING finger domain {Human (Homo s	92.57
d2bo4a1		381	Mannosylglycerate synthase, MGS {Rhodothermus mari	92.56
d1vyxa_		60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	89.87

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=4.2e-41  Score=297.13  Aligned_cols=88  Identities=60%  Similarity=1.299  Sum_probs=84.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             78888876456558864344588842478999123057899973312367576309976888720001237998656999
Q 003541            3 SEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDR   82 (811)
Q Consensus         3 ~~~~~~~k~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~ykr~kg~prv~gd~   82 (811)
                      ++|+.++||++++++|+||||||+||++++|++|||||||+|||||||||||||||||+|||||||||||||||||+|| 
T Consensus         2 ~~g~~g~kp~~~~~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr~kgsprv~gD-   80 (93)
T d1weoa_           2 SSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGD-   80 (93)
T ss_dssp             CCSSSSSSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTS-
T ss_pred             CCCCCCCCCHHHCCCCHHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCC-
T ss_conf             8877799773451552201154632417899888875236986450789999851670274448724552589877787-


Q ss_pred             CCCCCCCCC
Q ss_conf             877887988
Q 003541           83 EEDGDADDG   91 (811)
Q Consensus        83 ~~e~~~dd~   91 (811)
                      ++|+++||-
T Consensus        81 e~e~~~d~~   89 (93)
T d1weoa_          81 EDEEDIDSG   89 (93)
T ss_dssp             CCCCCSCCC
T ss_pred             CCCCCCCCC
T ss_conf             100143468

PyMOL of d1weoa_

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]}	Back information, alignment and structure

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}	Back information, alignment and structure