Citrus Sinensis ID: 003543

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-
MQAADQTVISLRPGGGGGPRGTRLFTHRFDSSSTPSSDSQTLPPHGGVASAFKMGDLRFEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQARYLEADNRDWRTRSTTSGQEKSLEANQEKMEFGAHEGQLNSQFASAQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKVTITHLECHNLLQVIIFLYSIFFLLKLRSLFAFQGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAMMRNGRTGATGGMGPGGFPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRSRTMPRGDSKSPSQFPGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQYTKPVAPAASVVASPEKPSAPVTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
cccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcc
ccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcHHHHHHHHHHHcccHHHHccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccEEHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcHHccccHHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHcccccHHHHHHHHHHHHcccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHcHHHHHHHHHHHHcc
mqaadqtvislrpgggggprgtrlfthrfdssstpssdsqtlpphggvasafkmgdlrfegheRVRYTREQLLQLKEVAQLTEDILKIKQEIESefdgegqswggraennnLQSQFQARYLEAdnrdwrtrsttsgqEKSLEANQEKMefgahegqlnsQFASAQIstnqgagpapalikaevpwsarrgnlsekDRVLKTVKGILNkltpekfdvlkgqlidsgittpdILKVTITHLECHNLLQVIIFLYSIFFLLKLRSLFAFQGVIELIFDKavleptfcPMYALLCSdlneklppfpsdepggkditfKRILLNHCQEAFEGADNTRAEIRQmtapeqemERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLendgktcpaeeNVEAICQFFNTIgkqldenpksrrvnDVYFSRLKelttnsqlvprlRFMIHDVldlrannwvprreEMKAKTITEIHSEAEknlglrpgatammrngrtgatggmgpggfpiarpgtggmmpgmpgtqkmpgmpgfdtdnwevprsrtmprgdskspsqfpgrvqspligkspsinskflpqgsggiisgktsallqgsptpsarpsgiasgvepltqytkpvapaasvvaspekpsapvtklNLADLRKKTVSLLEEYFSIRILDEALQCVEelraptyhpEVVKEAIALALekippcvePVIQLLEFLLNknvlttrdigTGCLLYGSLlddigidlpkapnnfgEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKsiqsspagQEVLAVQGAEVQACESLLT
mqaadqtvislrpgggggpRGTRLFTHRFDssstpssdsqtlppHGGVASAFKMGDLRFEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQARYLEADNRDWrtrsttsgqeksLEANQEKMEFGAHEGQLNSQFASAQISTNQGAGPAPALIKAEVpwsarrgnlsekdrvlKTVKGilnkltpekfdvlkgqlidsgiTTPDILKVTITHLECHNLLQVIIFLYSIFFLLKLRSLFAFQGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAfegadntraEIRQMtapeqemermDQERLVKLRTLGNIRLIGellkqkmvpEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTigkqldenpksrrVNDVYFSRLkelttnsqlvprlrFMIHDvldlrannwvprreEMKAKTITEihseaeknlglrpgATAMMRNGRtgatggmgpgGFPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRSRtmprgdskspsqfpGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQYTKPVAPAAsvvaspekpsapvtklnladLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
MQAADQTVISLrpgggggprgTRLFTHRFdssstpssdsQTLPPHGGVASAFKMGDLRFEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQARYLEADNRDWRTRSTTSGQEKSLEANQEKMEFGAHEGQLNSQFASAQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKVTITHLECHNLLQVIIFLYSIFFLLKLRSLFAFQGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAmmrngrtgatggmgpggFPIARpgtggmmpgmpgtqkmpgmpgFDTDNWEVPRSRTMPRGDSKSPSQFPGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQYTkpvapaasvvaspekpsapvTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
***************************************************FKMGDLRFEGHERVRYTREQLLQLKEVAQLTEDILKIK*********************************************************************************************VPW**********DRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKVTITHLECHNLLQVIIFLYSIFFLLKLRSLFAFQGVIELIFDKAVLEPTFCPMYALLCSDLNE*************DITFKRILLNHCQEAF***************************LVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLD*****RRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPR**********************************************************************************************************************************************************************************LNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAM****************************
******************************************************************YTREQLLQLKEVA*************************************************************************************************************************TVKGILNKLTPEKFDVLKGQLIDSGITTPDILKVTITHLECHNLLQVIIFLYSIFFLLKLRSLFAFQGVIELIFDKAVLEPTFCPMYALLCSDLNE***************TFKRILLNHCQEAFEGAD**********************RLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELT***QLVPRLRFMIHDVLDLRANN***************************************************************************************************************************************************************************************NLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMK**************QGAEVQACESLL*
MQAADQTVISLRPGGGGGPRGTRLFTHR***************PHGGVASAFKMGDLRFEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIES********WGGRAENNNLQSQFQARYLEADNRD***************ANQEKMEFGAHEGQLNSQFASAQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKVTITHLECHNLLQVIIFLYSIFFLLKLRSLFAFQGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAMMRNGRTGATGGMGPGGFPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRS*****************VQSPLIGKSPSINSKFLPQGSGGIISGKTSAL************GIASGVEPLTQYTKPVA**************PVTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
*****QTVISL*PGG*******************************************FEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQS*****************************************************************************************LSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKVTITHLECHNLLQVIIFLYSIFFLLKLRSLFAFQGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQM***EQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNL**************************************************************************************************************************************************************LNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQS******VLAV**AEVQAC*SLL*
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQAADQTVISLRPGGGGGPRGTRLFTHRFDSSSTPSSDSQTLPPHGGVASAFKMGDLRFEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQARYLEADNRDWRTRSTTSGQEKSLEANQEKMEFGAHEGQLNSQFASAQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKVTITHLECHNLLQVIIFLYSIFFLLKLRSLFAFQGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAMMRNGRTGATGGMGPGGFPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRSRTMPRGDSKSPSQFPGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQYTKPVAPAASVVASPEKPSAPVTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query811 2.2.26 [Sep-21-2011]
Q93ZT6780 Eukaryotic translation in yes no 0.939 0.976 0.573 0.0
Q03387788 Eukaryotic translation in N/A no 0.911 0.937 0.574 0.0
Q84PB3793 Eukaryotic translation in yes no 0.876 0.896 0.583 0.0
Q41583787 Eukaryotic translation in N/A no 0.911 0.939 0.566 0.0
Q6K641780 Eukaryotic translation in no no 0.939 0.976 0.570 0.0
O82233747 Eukaryotic translation in no no 0.900 0.977 0.540 0.0
Q5Z5Q3711 Zinc finger CCCH domain-c no no 0.361 0.412 0.389 4e-56
B9FXV51792 Eukaryotic translation in no no 0.625 0.282 0.316 1e-51
G5CEW61488 Eukaryotic translation in N/A no 0.362 0.197 0.350 5e-45
Q5R7J9 907 Eukaryotic translation in yes no 0.651 0.582 0.278 3e-40
>sp|Q93ZT6|IF4G1_ARATH Eukaryotic translation initiation factor isoform 4G-1 OS=Arabidopsis thaliana GN=EIF(ISO)4G1 PE=1 SV=1 Back     alignment and function desciption
 Score =  884 bits (2284), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/827 (57%), Positives = 594/827 (71%), Gaps = 65/827 (7%)

Query: 1   MQAADQTVISLRPGGGGGPRGTRLFTHRFDSSSTPSSDSQTLP--PHGGVASA---FKMG 55
           MQ  DQTV+SLRPGGG G R     +     S    S S      PHGG  ++   FK G
Sbjct: 1   MQQGDQTVLSLRPGGGRGNRLFGSSSSSSSLSFGSLSSSDLPLLRPHGGAPASSFPFKGG 60

Query: 56  DLRFEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSW--GGRAENNNLQ 113
           D RF+G ERV+YTREQLL+LKE  QL+++IL++++E  +E  GE  +W  G    +N + 
Sbjct: 61  DSRFDGRERVKYTREQLLELKETTQLSDEILRVQRETAAELFGEEGTWARGESVVSNLVP 120

Query: 114 SQFQARYLEADNRDWRTRSTT---SGQEKSLEANQEKMEFGAHEG-------QLNSQFAS 163
            Q  +R+ E D+RDWR+RST    SG+E+S +  +E  +    E        Q NSQF+ 
Sbjct: 121 VQSASRFSEPDSRDWRSRSTQPPPSGEERSWDNLREAKDSRYVEASQYNRQDQPNSQFSR 180

Query: 164 AQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLID 223
           A IS+NQG GPAP L+KAEVPWSARRGNLSE DRVLKTVKGILNKLTPEK+D+LKGQLI+
Sbjct: 181 ANISSNQGGGPAPVLVKAEVPWSARRGNLSENDRVLKTVKGILNKLTPEKYDLLKGQLIE 240

Query: 224 SGITTPDILKVTITHLECHNLLQVIIFLYSIFFLLKLRSLFAFQGVIELIFDKAVLEPTF 283
           SGIT+ DILK                                  GVI LIFDKAVLEPTF
Sbjct: 241 SGITSADILK----------------------------------GVITLIFDKAVLEPTF 266

Query: 284 CPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQ 343
           CPMYA LCSD+N++LP FP  EPG K+ITFKR+LLN CQEAFEGA   R E+RQM+AP+Q
Sbjct: 267 CPMYAKLCSDINDQLPTFPPAEPGDKEITFKRVLLNICQEAFEGASQLREELRQMSAPDQ 326

Query: 344 EMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAI 403
           E ER D+E+L+KL+TLGNIRLIGELLKQKMVPEKIVHHIVQELL  D K CPAEENVEAI
Sbjct: 327 EAERNDKEKLLKLKTLGNIRLIGELLKQKMVPEKIVHHIVQELLGADEKVCPAEENVEAI 386

Query: 404 CQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRR 463
           C FF TIGKQLD N KS+R+NDVYF RL+ L+ N QL  RLRFM+ +++D+R+N WVPRR
Sbjct: 387 CHFFKTIGKQLDGNVKSKRINDVYFKRLQALSKNPQLELRLRFMVQNIIDMRSNGWVPRR 446

Query: 464 EEMKAKTITEIHSEAEKNLGLRPGATAMMRNGRTGATGGMGPGG-FPIARPGTGGMMPGM 522
           EEMKA+TITEIH+EAEKNLGLRPGATA MR G   + G + PG  +P  RPG GG+MPGM
Sbjct: 447 EEMKARTITEIHTEAEKNLGLRPGATANMRRGMVSSGGPVSPGPVYPGGRPGAGGLMPGM 506

Query: 523 PGTQKMPGMPGFDTDNWEVPRSRTMPRGDSKSPSQFPGRVQSPLIGKSPSINSKFLPQGS 582
           PGT++MPGMPG D DNWEVPR+R+M R D       PG + SP + KS S+N++ LPQGS
Sbjct: 507 PGTRRMPGMPGVDNDNWEVPRTRSMSRRDG------PGPLHSPAVSKSASMNTRLLPQGS 560

Query: 583 GGIISGKTSALLQGSPTPSARPSGIASGVEPLTQYTKPVAPAASVVASPEKPSAPVTKLN 642
            GI+SGKTSALLQGS + S RP  +++      +  + VAP  +V    EKP     KL+
Sbjct: 561 SGIMSGKTSALLQGSGSVS-RPVTVSA-----ERPAQSVAP-LTVPVPVEKPQPSGPKLS 613

Query: 643 LADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVI 702
              L++KT SLLEEYF++R+L EALQCVEEL  P+YHPE VKEAI+L+LEK PP VEP+ 
Sbjct: 614 EEVLQRKTKSLLEEYFNVRLLGEALQCVEELGLPSYHPEFVKEAISLSLEKSPPVVEPIA 673

Query: 703 QLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVL 762
            LLE+LL+K V+  +D+ TG LLYG++LDDIGIDLPKAPNNFGE+VGKL++A  +DF ++
Sbjct: 674 TLLEYLLSKKVVAPKDLETGFLLYGAMLDDIGIDLPKAPNNFGEIVGKLILAGGVDFKLV 733

Query: 763 KEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESL 809
           +E++ K+ED+ F++ +  AA++ ++SS  G+ +LA Q A+++AC +L
Sbjct: 734 REIIGKMEDDRFQKMVVDAAVRIVESSEQGKSLLASQAADIEACRNL 780
Plays a role in the accumulation of some potyvirus during viral infection.
Arabidopsis thaliana (taxid: 3702)
>sp|Q03387|IF4G1_WHEAT Eukaryotic translation initiation factor isoform 4G-1 OS=Triticum aestivum PE=1 SV=2 Back     alignment and function description
>sp|Q84PB3|IF4G1_ORYSJ Eukaryotic translation initiation factor isoform 4G-1 OS=Oryza sativa subsp. japonica GN=Os04g0499300 PE=2 SV=2 Back     alignment and function description
>sp|Q41583|IF4G2_WHEAT Eukaryotic translation initiation factor isoform 4G-2 OS=Triticum aestivum PE=2 SV=1 Back     alignment and function description
>sp|Q6K641|IF4G2_ORYSJ Eukaryotic translation initiation factor isoform 4G-2 OS=Oryza sativa subsp. japonica GN=Os02g0611500 PE=2 SV=1 Back     alignment and function description
>sp|O82233|IF4G2_ARATH Eukaryotic translation initiation factor isoform 4G-2 OS=Arabidopsis thaliana GN=EIF(ISO)4G2 PE=1 SV=1 Back     alignment and function description
>sp|Q5Z5Q3|C3H43_ORYSJ Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa subsp. japonica GN=Os06g0520600 PE=2 SV=1 Back     alignment and function description
>sp|B9FXV5|IF4G_ORYSJ Eukaryotic translation initiation factor 4G OS=Oryza sativa subsp. japonica GN=Os07g0555200 PE=2 SV=2 Back     alignment and function description
>sp|G5CEW6|IF4G_WHEAT Eukaryotic translation initiation factor 4G OS=Triticum aestivum PE=1 SV=1 Back     alignment and function description
>sp|Q5R7J9|IF4G2_PONAB Eukaryotic translation initiation factor 4 gamma 2 OS=Pongo abelii GN=EIF4G2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query811
224143334750 predicted protein [Populus trichocarpa] 0.924 1.0 0.707 0.0
359484894795 PREDICTED: eukaryotic initiation factor 0.950 0.969 0.677 0.0
147833057794 hypothetical protein VITISV_013807 [Viti 0.949 0.969 0.679 0.0
359484892794 PREDICTED: eukaryotic initiation factor 0.949 0.969 0.677 0.0
359475890791 PREDICTED: eukaryotic initiation factor 0.951 0.975 0.699 0.0
356562555789 PREDICTED: eukaryotic initiation factor 0.946 0.973 0.655 0.0
224092613766 predicted protein [Populus trichocarpa] 0.937 0.992 0.706 0.0
356562557792 PREDICTED: eukaryotic initiation factor 0.948 0.970 0.652 0.0
356500679789 PREDICTED: eukaryotic initiation factor 0.945 0.972 0.654 0.0
224142359793 predicted protein [Populus trichocarpa] 0.944 0.965 0.646 0.0
>gi|224143334|ref|XP_002324920.1| predicted protein [Populus trichocarpa] gi|222866354|gb|EEF03485.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1089 bits (2817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/811 (70%), Positives = 641/811 (79%), Gaps = 61/811 (7%)

Query: 1   MQAADQTVISLRPGGGGGPRGTRLFTHRFDSSSTPSSDSQTLPPHGGVASAFKMGDLRFE 60
           MQA   TVISLRPGGG    G   F   F   +T                    G+LRFE
Sbjct: 1   MQADQTTVISLRPGGGSN--GVFPFFQVFVLPAT--------------------GELRFE 38

Query: 61  GHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQARY 120
            HER+RYTR+QLLQLKEV  + EDILKI+QEIESEF GE Q+W     + +LQ Q Q+RY
Sbjct: 39  DHERIRYTRDQLLQLKEVENVPEDILKIRQEIESEFVGEDQTWS--HADGSLQPQSQSRY 96

Query: 121 LEADNRDWRTRSTTSGQEKSLEANQEKMEFGAHEGQLNSQFASAQISTNQGAGPAPALIK 180
            E DNRDWR RS   G+++S EA +E  EF   + QLNSQFASAQI+ NQ  GPAPALIK
Sbjct: 97  SEPDNRDWRGRSAAFGEDRSREAIRENKEFYNRQDQLNSQFASAQITANQRVGPAPALIK 156

Query: 181 AEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKVTITHLE 240
           AEVPWS RRGNLSE++RVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILK       
Sbjct: 157 AEVPWSVRRGNLSEEERVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILK------- 209

Query: 241 CHNLLQVIIFLYSIFFLLKLRSLFAFQGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPP 300
                                      GVI LIFDKAVLEPTFCPMYALLCSDLNEKLPP
Sbjct: 210 ---------------------------GVISLIFDKAVLEPTFCPMYALLCSDLNEKLPP 242

Query: 301 FPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLG 360
           FPSDEPGGK+ITFKRILLN+CQEAFEGA N RAEI ++TAPEQEMER D+ERLVKLRT+G
Sbjct: 243 FPSDEPGGKEITFKRILLNNCQEAFEGAGNLRAEISKLTAPEQEMERRDKERLVKLRTMG 302

Query: 361 NIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKS 420
           N+RLIGELLKQKMVPEKIVHHIVQELL ND KTCPAEENVEAICQFFNTIGKQLDENPK+
Sbjct: 303 NMRLIGELLKQKMVPEKIVHHIVQELLGNDSKTCPAEENVEAICQFFNTIGKQLDENPKA 362

Query: 421 RRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEK 480
           RRVNDVYFSRLKELTTN  L PR RFM+ DVLDLRAN+WVPRREE+KAKTI+EIHSEAEK
Sbjct: 363 RRVNDVYFSRLKELTTNPHLAPRCRFMVRDVLDLRANSWVPRREEVKAKTISEIHSEAEK 422

Query: 481 NLGLRPGATAMMRNGRTGATGGMGPGGFPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWE 540
           NLGLRPGATA+MRNGR  ATGG+GPGGFPI RPG+GGMMPGMPG  KMPG+PG D DNWE
Sbjct: 423 NLGLRPGATAVMRNGRN-ATGGVGPGGFPIGRPGSGGMMPGMPGMMKMPGIPGLDADNWE 481

Query: 541 VPRSRTMPRGDSKSPSQFPGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTP 600
           VPRSR MPRG+S  P+   G V + LI KSP +N++ LPQGSGG+I+GK S LLQGS  P
Sbjct: 482 VPRSRAMPRGNSFGPTHVAGHVPTSLINKSPPLNARLLPQGSGGVIAGKPSLLLQGSGAP 541

Query: 601 SARPSGIASGVEPLTQYTKPVAPAASVVASPEKPSAPVTKLNLADLRKKTVSLLEEYFSI 660
           S RP G A+  EP  Q  KPVAPA S + SP+KP AP T+ N  DLR+KT+SLLEEYFS+
Sbjct: 542 S-RP-GFATRTEPAGQTPKPVAPAVSAIPSPQKPLAPTTRSNPDDLRRKTISLLEEYFSV 599

Query: 661 RILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIG 720
           RILDEALQCVEEL+  ++HPEV KEAIALALEK PPCVEPV++LLEFLL KNVLT RDIG
Sbjct: 600 RILDEALQCVEELKDTSFHPEVAKEAIALALEKSPPCVEPVVKLLEFLLTKNVLTARDIG 659

Query: 721 TGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFT 780
           TGCLLYGS LDDIGIDLPKAPNNFGE++G LVVA+ LDF V KEVLKKVED+ FR++IF+
Sbjct: 660 TGCLLYGSSLDDIGIDLPKAPNNFGEILGSLVVAQGLDFEVFKEVLKKVEDDRFRKAIFS 719

Query: 781 AAMKSIQSSPAGQEVLAVQGAEVQACESLLT 811
           +AM SI S+P+GQEVLA QG+ +QACESLL+
Sbjct: 720 SAMMSINSNPSGQEVLATQGSNIQACESLLS 750

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359484894|ref|XP_003633181.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147833057|emb|CAN70546.1| hypothetical protein VITISV_013807 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359484892|ref|XP_002277218.2| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359475890|ref|XP_002285559.2| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356562555|ref|XP_003549535.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|224092613|ref|XP_002309681.1| predicted protein [Populus trichocarpa] gi|222855657|gb|EEE93204.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356562557|ref|XP_003549536.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356500679|ref|XP_003519159.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like [Glycine max] Back     alignment and taxonomy information
>gi|224142359|ref|XP_002324526.1| predicted protein [Populus trichocarpa] gi|222865960|gb|EEF03091.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query811
TAIR|locus:2174353780 eIFiso4G1 "AT5G57870" [Arabido 0.653 0.679 0.573 1e-213
UNIPROTKB|Q1MSJ4793 eif(iso)4g "Putative eukaryoti 0.663 0.678 0.575 2e-206
UNIPROTKB|Q1MSJ3793 eif(iso)4g "Putative eukaryoti 0.663 0.678 0.573 5.4e-206
UNIPROTKB|Q1MSJ1793 eif(iso)4g "Putative eukaryoti 0.663 0.678 0.571 2.3e-205
UNIPROTKB|Q1MSJ0793 eif(iso)4g "Putative eukaryoti 0.663 0.678 0.569 6.2e-205
UNIPROTKB|Q1MSJ2790 eif(iso)4g "Putative eukaryoti 0.659 0.677 0.566 1e-202
TAIR|locus:2061370747 eIFiso4G2 "AT2G24050" [Arabido 0.658 0.714 0.570 1.7e-198
TAIR|locus:2131919263 AT4G30680 "AT4G30680" [Arabido 0.274 0.847 0.495 2.6e-54
TAIR|locus:2027124223 AT1G62410 "AT1G62410" [Arabido 0.244 0.887 0.49 3.9e-46
TAIR|locus:20819271727 EIF4G "AT3G60240" [Arabidopsis 0.252 0.118 0.455 1.1e-45
TAIR|locus:2174353 eIFiso4G1 "AT5G57870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1533 (544.7 bits), Expect = 1.0e-213, Sum P(2) = 1.0e-213
 Identities = 312/544 (57%), Positives = 389/544 (71%)

Query:   267 QGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFE 326
             +GVI LIFDKAVLEPTFCPMYA LCSD+N++LP FP  EPG K+ITFKR+LLN CQEAFE
Sbjct:   250 KGVITLIFDKAVLEPTFCPMYAKLCSDINDQLPTFPPAEPGDKEITFKRVLLNICQEAFE 309

Query:   327 GADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQEL 386
             GA   R E+RQM+AP+QE ER D+E+L+KL+TLGNIRLIGELLKQKMVPEKIVHHIVQEL
Sbjct:   310 GASQLREELRQMSAPDQEAERNDKEKLLKLKTLGNIRLIGELLKQKMVPEKIVHHIVQEL 369

Query:   387 LENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRF 446
             L  D K CPAEENVEAIC FF TIGKQLD N KS+R+NDVYF RL+ L+ N QL  RLRF
Sbjct:   370 LGADEKVCPAEENVEAICHFFKTIGKQLDGNVKSKRINDVYFKRLQALSKNPQLELRLRF 429

Query:   447 MIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAXXXXXXXXXXXXXXXX 506
             M+ +++D+R+N WVPRREEMKA+TITEIH+EAEKNLGLRPGATA                
Sbjct:   430 MVQNIIDMRSNGWVPRREEMKARTITEIHTEAEKNLGLRPGATANMRRGMVSSGGPVSPG 489

Query:   507 -XFPIARXXXXXXXXXXXXXXXXXXXXXFDTDNWEVPRSRTMPRGDSKSPSQFPGRVQSP 565
               +P  R                      D DNWEVPR+R+M R D       PG + SP
Sbjct:   490 PVYPGGRPGAGGLMPGMPGTRRMPGMPGVDNDNWEVPRTRSMSRRDG------PGPLHSP 543

Query:   566 LIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQYTXXXXXXX 625
              + KS S+N++ LPQGS GI+SGKTSALLQGS + S RP  + S   P            
Sbjct:   544 AVSKSASMNTRLLPQGSSGIMSGKTSALLQGSGSVS-RPVTV-SAERP-----AQSVAPL 596

Query:   626 XXXXXXXXXXXXXTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKE 685
                           KL+   L++KT SLLEEYF++R+L EALQCVEEL  P+YHPE VKE
Sbjct:   597 TVPVPVEKPQPSGPKLSEEVLQRKTKSLLEEYFNVRLLGEALQCVEELGLPSYHPEFVKE 656

Query:   686 AIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFG 745
             AI+L+LEK PP VEP+  LLE+LL+K V+  +D+ TG LLYG++LDDIGIDLPKAPNNFG
Sbjct:   657 AISLSLEKSPPVVEPIATLLEYLLSKKVVAPKDLETGFLLYGAMLDDIGIDLPKAPNNFG 716

Query:   746 EMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQA 805
             E+VGKL++A  +DF +++E++ K+ED+ F++ +  AA++ ++SS  G+ +LA Q A+++A
Sbjct:   717 EIVGKLILAGGVDFKLVREIIGKMEDDRFQKMVVDAAVRIVESSEQGKSLLASQAADIEA 776

Query:   806 CESL 809
             C +L
Sbjct:   777 CRNL 780
GO:0003723 "RNA binding" evidence=ISS
GO:0003743 "translation initiation factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0006412 "translation" evidence=ISS
GO:0006413 "translational initiation" evidence=ISS
GO:0016070 "RNA metabolic process" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
UNIPROTKB|Q1MSJ4 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ3 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ1 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza glaberrima (taxid:4538)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ0 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza glaberrima (taxid:4538)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ2 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza glaberrima (taxid:4538)] Back     alignment and assigned GO terms
TAIR|locus:2061370 eIFiso4G2 "AT2G24050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131919 AT4G30680 "AT4G30680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027124 AT1G62410 "AT1G62410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081927 EIF4G "AT3G60240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q41583IF4G2_WHEATNo assigned EC number0.56610.91120.9390N/Ano
Q84PB3IF4G1_ORYSJNo assigned EC number0.58370.87660.8965yesno
Q93ZT6IF4G1_ARATHNo assigned EC number0.57310.93950.9769yesno
Q03387IF4G1_WHEATNo assigned EC number0.57400.91120.9378N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_XVIII0175
hypothetical protein (750 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query811
pfam02854198 pfam02854, MIF4G, MIF4G domain 1e-44
smart00543200 smart00543, MIF4G, Middle domain of eukaryotic ini 2e-39
pfam02847113 pfam02847, MA3, MA3 domain 4e-29
smart00544113 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and 1e-27
>gnl|CDD|217253 pfam02854, MIF4G, MIF4G domain Back     alignment and domain information 
 Score =  159 bits (403), Expect = 1e-44
 Identities = 80/263 (30%), Positives = 123/263 (46%), Gaps = 68/263 (25%)

Query: 199 LKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKVTITHLECHNLLQVIIFLYSIFFLL 258
           LK VKG+LNKL+P  F+ +  +L+   ++  ++LK                         
Sbjct: 1   LKKVKGLLNKLSPSNFEKIIDELLKLNMSDKNLLK------------------------- 35

Query: 259 KLRSLFAFQGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILL 318
                     ++ELIF+KAV EP F P YA LC+ LN K P             F  +LL
Sbjct: 36  ---------YILELIFEKAVEEPNFIPAYARLCAGLNSKNP------------DFGELLL 74

Query: 319 NHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKI 378
           N  QE FE                      ++ER  + R LG +R +GEL   K++ EKI
Sbjct: 75  NRLQEEFEKGVE------------------EEERGNRKRRLGLVRFLGELFNFKVLTEKI 116

Query: 379 VHHIVQELLENDGKTCP-AEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKE--LT 435
           +   ++ELLE+  +  P  E ++E +     T GK LD   K +++ D    R+++  L+
Sbjct: 117 ILECLKELLESLTEEDPRDEFSLEILLLLLTTCGKLLD-REKLKKLMDEILERIQKYLLS 175

Query: 436 TNSQLVPRLRFMIHDVLDLRANN 458
            + +L  RLRFM+ D+++LR N 
Sbjct: 176 ADPELSSRLRFMLEDLIELRKNK 198

MIF4G is named after Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Length = 198
>gnl|CDD|214713 smart00543, MIF4G, Middle domain of eukaryotic initiation factor 4G (eIF4G) Back     alignment and domain information
>gnl|CDD|111714 pfam02847, MA3, MA3 domain Back     alignment and domain information
>gnl|CDD|214714 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 811
KOG0401970 consensus Translation initiation factor 4F, riboso 100.0
PF02854209 MIF4G: MIF4G domain; InterPro: IPR003890 This entr 99.98
smart00543200 MIF4G Middle domain of eukaryotic initiation facto 99.95
smart00544113 MA3 Domain in DAP-5, eIF4G, MA-3 and other protein 99.88
PF02847113 MA3: MA3 domain; InterPro: IPR003891 This entry re 99.88
KOG0403 645 consensus Neoplastic transformation suppressor Pdc 99.83
KOG2140 739 consensus Uncharacterized conserved protein [Gener 99.81
KOG0403 645 consensus Neoplastic transformation suppressor Pdc 99.78
KOG2141822 consensus Protein involved in high osmolarity sign 99.39
KOG3942348 consensus MIF4G domain-containing protein [Transla 98.73
KOG2051 1128 consensus Nonsense-mediated mRNA decay 2 protein [ 98.68
KOG0401970 consensus Translation initiation factor 4F, riboso 98.19
KOG20511128 consensus Nonsense-mediated mRNA decay 2 protein [ 97.53
KOG1104 759 consensus Nuclear cap-binding complex, subunit NCB 94.21
PF1215275 eIF_4G1: Eukaryotic translation initiation factor 86.77
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=4.8e-69  Score=652.44  Aligned_cols=759  Identities=30%  Similarity=0.427  Sum_probs=553.1

Q ss_pred             CcCCcc---eEEeccCCCCCCCCCccccccCCCCC--CC--CCCCCCCCCCCCCCc---ccccCCCccCCCcccccCHHH
Q 003543            2 QAADQT---VISLRPGGGGGPRGTRLFTHRFDSSS--TP--SSDSQTLPPHGGVAS---AFKMGDLRFEGHERVRYTREQ   71 (811)
Q Consensus         2 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~y~~~~   71 (811)
                      +.+++.   +++++|+|..  ...+.|+.....+.  +.  ++....++.+++.+.   .....+.++....+..|....
T Consensus       142 ~~~~~s~~~~l~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~  219 (970)
T KOG0401|consen  142 QEGEPSSTKALILKKSGEE--ADDKAFGEPKESSLGEGQADSSTPKTSEDGIPFEKPPDPEEQKASDRMDALTLAFSEEL  219 (970)
T ss_pred             cCCCCCccccccccccccc--ccccccccccccccccccCCCCCcccccccCCCCCCCCcccccccccchhhhhhhhhhh
Confidence            345555   9999999995  33445555433222  21  222222455666543   444566677777788999999


Q ss_pred             HHHHHHHhhccHHHHHhhhhhccccccCCCCCCCCCCCCcccchhhhhhcccCCccccccCCCC--CcccchhhhHhhhh
Q 003543           72 LLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQARYLEADNRDWRTRSTTS--GQEKSLEANQEKME  149 (811)
Q Consensus        72 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  149 (811)
                      ++.......++..++..+......+..++.+|. + ..+........|..++.++||.....+.  ...+.++..++..-
T Consensus       220 ~~~~e~~~~~~d~~~~~~e~~~~~~~~e~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  297 (970)
T KOG0401|consen  220 LLEAENTPRSSDEYVRRIEAEQEPLRPEEPSGL-R-AIQKIPEKATERRAEESGRDKPEHEDQTKPAGNRLLDEPRESQP  297 (970)
T ss_pred             hhhhhhcCCcchHHHHHHHHHhhccCCccchhh-h-cccccccccccccccccccccccccccccccccccccchhhhcc
Confidence            998887788999988887778888999999982 2 2222466778899999999998776665  22244544444332


Q ss_pred             ccccccc---ccchhhhhhcccCCCCCCCcccccccCCCccccCCCChHHHHHHHHHHHhhcCChhhHHHHHHHHHHccC
Q 003543          150 FGAHEGQ---LNSQFASAQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGI  226 (811)
Q Consensus       150 ~~~~~~~---~~~~~~~~~~~~~~~~~p~~~l~~~e~~w~~~~~~~~~~e~l~r~Vk~iLNKLTpenFd~l~~ql~~~~i  226 (811)
                      ...+..+   ....+.........+..|.+...++..+|...+...+..+++.+.|++|||||||++|+.++.++++.+|
T Consensus       298 ~~~~e~~~~~~~~~~~~~~~~~~~~~~ps~k~a~~~~~~~~~~~~~~~~~el~~~vrsilnkltp~~~~~l~~q~~~~~i  377 (970)
T KOG0401|consen  298 AENGEPAKKGVEEVEEVVLNFAQKAPSPSPKRAKSKSDQGAERKDVELKEELAKRVRSLLNKLTPERKELLIEQLIELNV  377 (970)
T ss_pred             ccccccccccchhhhHHHHHhccCCCCCcchhhccccccccccchhHHHHHHHHHHhhhcCCCchHHHHHHHHHHHhhcc
Confidence            2221110   1222222233344666788888889999988888888889999999999999999999999999999999


Q ss_pred             CchhhhhhhhhhhccchhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhhCCCCCCCCC
Q 003543          227 TTPDILKVTITHLECHNLLQVIIFLYSIFFLLKLRSLFAFQGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEP  306 (811)
Q Consensus       227 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~VI~lIfeKAi~Ep~fs~mYA~LC~~L~~~l~~~~~~e~  306 (811)
                      ++.++|+                                  +||.+||||||.||+||.|||+||..|.. .+.++..+.
T Consensus       378 ~t~~~l~----------------------------------~vi~~vfdkAi~EP~f~~~yA~lc~~l~~-~~~~~~~~~  422 (970)
T KOG0401|consen  378 DTDDALK----------------------------------EVIELVFDKAINEPTFCAMYARLCFDLEG-PPSEPELDM  422 (970)
T ss_pred             CcHHHHh----------------------------------HHHHHHHHhhhcccccchhcchhcccccC-CccCCCcCC
Confidence            9999998                                  99999999999999999999999999998 555555556


Q ss_pred             CCcchhHHHHHHHHHHHHHhhhh-hhHHHHhhcCChHH-HHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCHHHHHHHHH
Q 003543          307 GGKDITFKRILLNHCQEAFEGAD-NTRAEIRQMTAPEQ-EMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQ  384 (811)
Q Consensus       307 ~gk~~~FRrlLLnrcQeeFe~~~-~~~~ei~~l~~~e~-E~E~~e~e~~~KrR~LGnIrFIGELfk~~mL~e~Ii~~cI~  384 (811)
                      .+..++||++||++||++|+... ....++..+..+++ |.++.+.+++.++|++|||+|||+||+..|++++|||.||+
T Consensus       423 ~~~~~~fr~~lL~rcq~~fe~~~~~~~~~~~~~~~~~~~e~~le~~k~~~~~rtlgn~~~ig~l~~~~ml~e~i~~~~v~  502 (970)
T KOG0401|consen  423 GGDEINFRRLLLNRCQKEFEGEDDKIADEYSEAEEPDELEEELEEEKYILRRRTLGNFRFIGELFKLKMLTEKIVHACVQ  502 (970)
T ss_pred             CCCcccHHHHHHHHhHHHhhcccHHHHHHhhhhcCchhHHHHHHhccceecCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67779999999999999999988 56667777666655 55566666788999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCChhhHHHHHHHHHHHhhhhhcCCcchhhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhCCCCcccc
Q 003543          385 ELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRRE  464 (811)
Q Consensus       385 ~LL~~~~~~~p~Ee~IEcLc~LL~tiGk~Ld~~~k~~~~mD~yF~rL~~l~~~~~lSsRIRFmI~dvIdLR~n~W~~r~~  464 (811)
                      .||..+.   ++|++|||+|+|++|||+.||........||.||.+++.+...+.+++|+|||++++||||.++|++|+.
T Consensus       503 ~Ll~~~~---~~ee~ie~lc~f~~tig~~lD~~~~s~r~md~~~~~~k~~~~~~~~s~r~RfM~~~~idlR~~~w~~rr~  579 (970)
T KOG0401|consen  503 KLLSDDQ---PSEESIECLCRFLTTIGKKLDFSKESPRNMDEYFNSMKNLKRKPQRSNRIRFMLQSVIDLRKSGWGPRRA  579 (970)
T ss_pred             Hhhcccc---ccchhhhhHHhhhhcccccccccCcccchhHHHHHHHHHhhhhhhhccchhhhhccccccccccccchhc
Confidence            9998642   7899999999999999999997544333499999999999999999999999999999999999999999


Q ss_pred             ccCcc-cHHHHHHHHHHhcCCCCchhhhhhcCCCCC---CCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003543          465 EMKAK-TITEIHSEAEKNLGLRPGATAMMRNGRTGA---TGGM-----GPGGFPIARPGTGGMMPGMPGTQKMPGMPGFD  535 (811)
Q Consensus       465 ~~~pk-ti~eIh~Eae~~~~~~~~~~~~~r~~r~~~---~g~~-----~pg~~~~~~p~~gg~~p~~~~~r~~p~~pg~~  535 (811)
                      +.+++ +|++||.++.+..+..++....+++++.+.   .+..     .+.+....+...+.|+++++...-+..++.++
T Consensus       580 ~~~~~~~ieei~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~  659 (970)
T KOG0401|consen  580 EETNDKPIEEIAPEAPSANRWSPKSLSKKTEGRLAEESDSGLLGKEVVERKGKSGLRKLTPEMFDKISDPILDIADQSMD  659 (970)
T ss_pred             ccCCCCchhhcchhhhhhcccCcccccccccccccccccccccCccccccccccccccCChhhcccccccccccchhhcc
Confidence            88877 999999999888765555443344433211   0000     01112223344455566665443444455666


Q ss_pred             CCCCCccCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCcCC--CCccccC---CCCCCCCCC
Q 003543          536 TDNWEVPRSR--TMPRGDSKSPSQFPGRVQSPLIGKSPSIN----SKFLPQGSGGIISG--KTSALLQ---GSPTPSARP  604 (811)
Q Consensus       536 ~d~~~~~~~~--s~~r~~~~~~~~~~~~~~~~~~~k~~~~n----~~~~p~gs~~~~sg--k~sall~---~~~~p~~r~  604 (811)
                      .++|++....  ..++..+.. +++ ...+.+..++.....    ....++|+.+....  ..++...   ..+....++
T Consensus       660 e~~~~~~k~~~~~~~~k~~~~-~~~-~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  737 (970)
T KOG0401|consen  660 EEDGEASKQKGEQGGRKASDE-QHF-SSMRAPALEKVVPSLSSDIDDKRNRGSNGELLSDSYLSARCHEEFENGWSRELP  737 (970)
T ss_pred             ccccchhhhcccccccccCcc-ccc-cccCCccccccccccccccccccccCCccccccccccchhhhhhccccccccCC
Confidence            6677655332  222221111 011 011222222211111    12334444431111  1111111   111011111


Q ss_pred             CCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHH
Q 003543          605 SGIASGVEPLTQYTKPVAPAASVVASPEKPSAPVT--KLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEV  682 (811)
Q Consensus       605 ~~~~~~~~~~~q~~~~~k~~~~~p~~~~~~~~~~~--~ls~EEl~kki~sil~EY~~~~D~~EA~~cikEL~~p~~~~ev  682 (811)
                      ++....+     .+.-+.+. -.++.+.+.++...  .++.+.+..++++|++||++..+.+|++.|+++|++|.+|+.+
T Consensus       738 s~~~~~~-----~~e~~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~~sk~l~ee~~~~~~~~~~~~~ie~l~S~~~~~~~  811 (970)
T KOG0401|consen  738 SGKDGER-----EPEMMSPE-YYAAKAAKRAGLGLVIALSSELLELLSKSLLEEFLSLRLEKEALKCIEELESPSLLLKT  811 (970)
T ss_pred             CCccccc-----chhhcCcc-cchhhhhhccCCcchhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhhHHH
Confidence            1111111     00001010 00111222333344  7889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHH-
Q 003543          683 VKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIV-  761 (811)
Q Consensus       683 V~~~I~~aLEkk~~erElvs~LL~~L~~~~lls~~q~~~Gf~~vle~LdDl~iDiP~A~~~La~fiaraV~dg~l~~~~-  761 (811)
                      |..+|+..|++++..++++++||..|+..+.++.+++..||..++..++|+.||+|++|.|+++|++.++..+++++.. 
T Consensus       812 v~~~v~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~d~pk~w~~~~e~~gp~~~~~~~~~~e~  891 (970)
T KOG0401|consen  812 VGENIEPTLEKSPQAVEELLQLLDILVSKNPLSIETLEIGYREKFKLADDKELDLPKGWNYIKEFLGPLIHQKILDESEL  891 (970)
T ss_pred             HHHhcCcccccChhHHHHHHHHHHHHHhcCcccHHHHhhhHHHHHhhhHHHhcccccchhHHHHhhhhHhhhccccHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999954 


Q ss_pred             HHHHHhhhcchhHHHHHHHHHHHHHhcCCCchhhHhhhhhhHHHHhhhh
Q 003543          762 LKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLL  810 (811)
Q Consensus       762 i~~~~~~~~d~~~~~~~l~~~l~~l~~~~~g~~v~~~~~~~~~~~~~~~  810 (811)
                      +..+...+++.+++..++.+++..+...-++.++.+..+....+|+.++
T Consensus       892 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  940 (970)
T KOG0401|consen  892 VREILKNMRPNGRRSNVLFSVLEIVEKELGRADLGDIQRESFLSTKTLL  940 (970)
T ss_pred             HHHHhhcCCccccccchHHHHHHHHHHhhhHHHHHHHHHHhcccchhcc
Confidence            5677778899999999999999999988899999999999999998764

>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain Back     alignment and domain information
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G) Back     alignment and domain information
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ] Back     alignment and domain information
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms] Back     alignment and domain information
>KOG3942 consensus MIF4G domain-containing protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification] Back     alignment and domain information
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification] Back     alignment and domain information
>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification] Back     alignment and domain information
>PF12152 eIF_4G1: Eukaryotic translation initiation factor 4G1; InterPro: IPR022745 The eukaryotic initiation factor 4G (eIF4G) is the core of a multicomponent switch controlling gene expression at the level of translation initiation Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query811
1hu3_A260 Middle Domain Of Human Eif4gii Length = 260 2e-34
2vso_E284 Crystal Structure Of A Translation Initiation Compl 2e-14
1ug3_A 339 C-Terminal Portion Of Human Eif4gi Length = 339 2e-06
2ion_A152 Crystal Structure Of The C-terminal Ma3 Domain Of P 3e-04
2nsz_A129 1.15 Angstrom Crystal Structure Of The Ma3 Domain O 3e-04
3eiq_C358 Crystal Structure Of Pdcd4-eif4a Length = 358 4e-04
2ggf_A137 Solution Structure Of The Ma3 Domain Of Human Progr 4e-04
3eij_A321 Crystal Structure Of Pdcd4 Length = 321 5e-04
2hm8_A136 Solution Structure Of The C-Terminal Ma-3 Domain Of 6e-04
2kzt_B131 Structure Of The Tandem Ma-3 Region Of Pdcd4 Length 7e-04
>pdb|1HU3|A Chain A, Middle Domain Of Human Eif4gii Length = 260 Back     alignment and structure 
Iteration: 1

 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/294 (34%), Positives = 151/294 (51%), Gaps = 57/294 (19%)
Query: 198 VLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKVTITHLECHNLLQVIIFLYSIFFL 257
           + + V+ ILNKLTP+ F+ L  Q+    + T + LK                        
Sbjct: 11  LFRKVRSILNKLTPQXFNQLXKQVSGLTVDTEERLK------------------------ 46
Query: 258 LKLRSLFAFQGVIELIFDKAVLEPTFCPMYALLCSDL-NEKLPPFPSDEPGGKDITFKRI 316
                     GVI+L+F+KA+ EP+F   YA  C  L   K+P   +D+PG   + F+++
Sbjct: 47  ----------GVIDLVFEKAIDEPSFSVAYANXCRCLVTLKVPX--ADKPGNT-VNFRKL 93
Query: 317 LLNHCQEAFEG--ADN-----TRAEIRQMTAPEQEMERMDQ----ERLVKLRTLGNIRLI 365
           LLN CQ+ FE   AD+      + E+   +APE+     D+    +   + R++GNI+ I
Sbjct: 94  LLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFI 153
Query: 366 GELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLD-ENPKSRRVN 424
           GEL K K + E I H  V +LL+N       EE++E +C+   TIGK LD E  K R   
Sbjct: 154 GELFKLKXLTEAIXHDCVVKLLKNHD-----EESLECLCRLLTTIGKDLDFEKAKPR--X 206
Query: 425 DVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEA 478
           D YF++ +++    +   R+RF + DV+DLR  NWV RR +   KTI +IH EA
Sbjct: 207 DQYFNQXEKIVKERKTSSRIRFXLQDVIDLRLCNWVSRRADQGPKTIEQIHKEA 260
>pdb|2VSO|E Chain E, Crystal Structure Of A Translation Initiation Complex Length = 284 Back     alignment and structure
>pdb|1UG3|A Chain A, C-Terminal Portion Of Human Eif4gi Length = 339 Back     alignment and structure
>pdb|2ION|A Chain A, Crystal Structure Of The C-terminal Ma3 Domain Of Pdcd4 (mouse); Form2 Length = 152 Back     alignment and structure
>pdb|2NSZ|A Chain A, 1.15 Angstrom Crystal Structure Of The Ma3 Domain Of Pdcd4 Length = 129 Back     alignment and structure
>pdb|3EIQ|C Chain C, Crystal Structure Of Pdcd4-eif4a Length = 358 Back     alignment and structure
>pdb|2GGF|A Chain A, Solution Structure Of The Ma3 Domain Of Human Programmed Cell Death 4 Length = 137 Back     alignment and structure
>pdb|3EIJ|A Chain A, Crystal Structure Of Pdcd4 Length = 321 Back     alignment and structure
>pdb|2HM8|A Chain A, Solution Structure Of The C-Terminal Ma-3 Domain Of Pdcd4 Length = 136 Back     alignment and structure
>pdb|2KZT|B Chain B, Structure Of The Tandem Ma-3 Region Of Pdcd4 Length = 131 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query811
1hu3_A260 EIF4GII; heat repeat, translation; 2.37A {Homo sap 5e-71
2vso_E284 Eukaryotic initiation factor 4F subunit P150; acet 2e-61
2i2o_A224 EIF4G-like protein; protein structure initiative, 1e-49
3rk6_A234 Polyadenylate-binding protein-interacting protein; 2e-49
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 1e-35
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 1e-33
3eiq_C 358 Programmed cell death protein 4; PDCD4, anti-oncog 1e-32
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 8e-28
2zu6_B 307 Programmed cell death protein 4; protein-protein c 2e-32
2zu6_B307 Programmed cell death protein 4; protein-protein c 9e-30
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 2e-32
1ug3_A 339 EIF4GI, eukaryotic protein synthesis initiation fa 8e-31
3l6a_A 364 Eukaryotic translation initiation factor 4 gamma; 2e-29
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-10
1uw4_B248 UPF2, regulator of nonsense transcripts 2; nonsens 6e-11
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14 Length = 260 Back     alignment and structure
 Score =  233 bits (594), Expect = 5e-71
 Identities = 96/296 (32%), Positives = 149/296 (50%), Gaps = 53/296 (17%)

Query: 194 EKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKVTITHLECHNLLQVIIFLYS 253
           +   + + V+ ILNKLTP+ F+ L  Q+    + T + LK                    
Sbjct: 7   KTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLK-------------------- 46

Query: 254 IFFLLKLRSLFAFQGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITF 313
                         GVI+L+F+KA+ EP+F   YA +C  L     P       G  + F
Sbjct: 47  --------------GVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKP--GNTVNF 90

Query: 314 KRILLNHCQEAFE-------GADNTRAEIRQMTAPEQ----EMERMDQERLVKLRTLGNI 362
           +++LLN CQ+ FE         +  + E+   +APE+      E  + +   + R++GNI
Sbjct: 91  RKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNI 150

Query: 363 RLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRR 422
           + IGEL K KM+ E I+H  V +LL+N       EE++E +C+   TIGK LD   K++ 
Sbjct: 151 KFIGELFKLKMLTEAIMHDCVVKLLKN-----HDEESLECLCRLLTTIGKDLDF-EKAKP 204

Query: 423 VNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEA 478
             D YF++++++    +   R+RFM+ DV+DLR  NWV RR +   KTI +IH EA
Sbjct: 205 RMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEA 260
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E* Length = 284 Back     alignment and structure
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio} Length = 224 Back     alignment and structure
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens} Length = 234 Back     alignment and structure
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A Length = 165 Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Length = 129 Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Length = 358 Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Length = 358 Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Length = 307 Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Length = 307 Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Length = 152 Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Length = 339 Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14 Length = 248 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 811
d1hu3a_243 a.118.1.14 (A:) Eukaryotic initiation factor eIF4G 2e-59
d1uw4b_248 a.118.1.14 (B:) Regulator of nonsense transcripts 6e-40
d1ug3a1193 a.118.1.14 (A:1235-1427) Eukaryotic initiation fac 1e-32
d2nsza1129 a.118.1.14 (A:322-450) Programmed cell death 4, PD 2e-31
d1h2vc1262 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-bin 4e-05
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 243 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  200 bits (508), Expect = 2e-59
 Identities = 87/278 (31%), Positives = 139/278 (50%), Gaps = 53/278 (19%)

Query: 194 EKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKVTITHLECHNLLQVIIFLYS 253
           +   + + V+ ILNKLTP+ F+ L  Q+    + T + LK                    
Sbjct: 7   KTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLK-------------------- 46

Query: 254 IFFLLKLRSLFAFQGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITF 313
                         GVI+L+F+KA+ EP+F   YA +C  L     P    +  G  + F
Sbjct: 47  --------------GVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPM--ADKPGNTVNF 90

Query: 314 KRILLNHCQEAFEGA-------DNTRAEIRQMTAPEQEM----ERMDQERLVKLRTLGNI 362
           +++LLN CQ+ FE         +  + E+   +APE+      E  + +   + R++GNI
Sbjct: 91  RKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNI 150

Query: 363 RLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRR 422
           + IGEL K KM+ E I+H  V +LL+N       EE++E +C+   TIGK LD   K++ 
Sbjct: 151 KFIGELFKLKMLTEAIMHDCVVKLLKN-----HDEESLECLCRLLTTIGKDLDFE-KAKP 204

Query: 423 VNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWV 460
             D YF++++++    +   R+RFM+ DV+DLR  NWV
Sbjct: 205 RMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWV 242
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 248 Back     information, alignment and structure
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 193 Back     information, alignment and structure
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 129 Back     information, alignment and structure
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 262 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query811
d1hu3a_243 Eukaryotic initiation factor eIF4G {Human (Homo sa 100.0
d1uw4b_248 Regulator of nonsense transcripts 2, UPF2 {Human ( 100.0
d1ug3a1193 Eukaryotic initiation factor eIF4G {Human (Homo sa 99.98
d2nsza1129 Programmed cell death 4, PDCD4 {Mouse (Mus musculu 99.96
d1h2vc1262 CBP80, 80KDa nuclear cap-binding protein {Human (H 99.38
d1rf8b_100 Eukaryotic initiation factor 4f subunit eIF4g, eIF 84.03
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=341.52  Aligned_cols=226  Identities=38%  Similarity=0.690  Sum_probs=189.9

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             37899999999851379142899999998703886223334332210010358999999899998753224479799999
Q 003543          194 EKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKVTITHLECHNLLQVIIFLYSIFFLLKLRSLFAFQGVIELI  273 (811)
Q Consensus       194 ~~e~i~r~Vk~iLNKLTpenFd~l~~qL~~~~i~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~VI~lI  273 (811)
                      +.+++.|+|+|+|||||++||+.++.+|+++.+++.+.++                                  .+|..|
T Consensus         7 ~~~~l~r~v~~lLNKLt~~n~~~i~~ei~~l~~~~~~~l~----------------------------------~~v~~I   52 (243)
T d1hu3a_           7 KTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLK----------------------------------GVIDLV   52 (243)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHH----------------------------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHH----------------------------------HHHHHH
T ss_conf             8999999999998629999999999999998766899999----------------------------------999999


Q ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCHHHH--
Q ss_conf             999630898538999999998631999999999995014899999999999841120179986-------05982799--
Q 003543          274 FDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIR-------QMTAPEQE--  344 (811)
Q Consensus       274 feKAi~Ep~fs~mYA~LC~~L~~~l~~~~~~e~~gk~~~FRrlLLnrcQeeFe~~~~~~~ei~-------~l~~~e~E--  344 (811)
                      |+||+.||+||.+||+||..|....+...  +..++...|++.||++||++|++.........       ....++.+  
T Consensus        53 ~~kai~e~~f~~~YA~Lc~~l~~~~~~~~--~~~~~~~~F~~~Ll~~~q~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (243)
T d1hu3a_          53 FEKAIDEPSFSVAYANMCRCLVTLKVPMA--DKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTR  130 (243)
T ss_dssp             HHHHHHCGGGHHHHHHHHHHHTTCCCC-----------CHHHHHHHHHHHHHHHHTC-----------------------
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf             99987386340899999999987068622--2555222899999999999998866542356765400010114178888


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             --788789999987542247889999822888789999999998603799999933399999999998554313983122
Q 003543          345 --MERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRR  422 (811)
Q Consensus       345 --~E~~d~e~~~Krr~LGnIrFIGELfk~~lL~e~Ii~~cI~~LL~~~~~~~p~Ee~IEcLc~LL~tiGk~Ld~~~k~~~  422 (811)
                        .+..+.+.+.|++++|+++||||||+.++++.++|+.|+..|+.+     |+|++|||+|.||++||+.|+. +.++.
T Consensus       131 ~~~e~~~~~~~~k~~~~g~i~figeLy~~~~v~~~~i~~~l~~Ll~~-----~~e~~ie~l~~lL~~~G~~L~~-~~~~~  204 (243)
T d1hu3a_         131 LHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKN-----HDEESLECLCRLLTTIGKDLDF-EKAKP  204 (243)
T ss_dssp             -------CCSSHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHS-----CSHHHHHHHHHHHHHHHHHHCC-TTTHH
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHC-CCCHH
T ss_conf             77889999998888840049999999713643099999999985489-----9878999999999999999953-25388


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             299999999977619998868999999999998689976
Q 003543          423 VNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVP  461 (811)
Q Consensus       423 ~mD~yF~rL~~l~~~~~lSsRIRFmI~dvIdLR~nnW~~  461 (811)
                      .||.||++|+.+..++++|+|+||||+||+|||++||++
T Consensus       205 ~~~~~~~~l~~~~~~~~~s~Rirfml~~l~elR~~~W~s  243 (243)
T d1hu3a_         205 RMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVS  243 (243)
T ss_dssp             HHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             899999999999866998889999999999999868999
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rf8b_ a.210.1.1 (B:) Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure