Citrus Sinensis ID: 003544

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-

MKLSTSGLCQQGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPSTSSFNDNRDETASGLNWLRGGTGEQGLTTLNFQSLGMFPWMQQRVEPSFLGNDHNQQYQAMLAAGMQSGDPVRQQFMQLQQPFQYLQQSGSQNPLQLKQQQHLLQQLNSQAEDRAQQQQQPQQHMYHDALQIRTDELLQRQQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSLGSKYEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQNSVVFGVHIDSSGLLLPTTVSSFTTSVDPGVSSMPLGDSGFHNSMYGCMQDSSELLHNVGQIDQLTPTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANSRGNCGRDPVGSLEY

cccccccccccccccccccccHHHHHHcccccccccccccEEEEcccHHHHHHHccccHHHcccccccccccccccEEEEEEEEccccccccEEEEEEEccccccccccccccccccccccccccEEEEEEEccccccccccccccccHHHccccccccccccccEEEEEEcccccEEEEEEEccccccccccccccccccccccccccEEEEEEcccccEEEEEEEEccccccccccccccccccccHHHHHHHHHccccccEEEEccccccccEEEccHHHHHHHHHcccccccEEEEEEccccccEEEEEEEEEEEcccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHcccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccEEEEEccccccEEEccccccHHHHHHHHHHHHccccccccccccccEEEEEEccccEEEcccccHHHHHHHccEEEEEcHHHHHcccccccccccccccccccccccccccccccccc

cccccccccccccccccccHHHHHHHHHcccccEccccccEEEEcccccHHHHHHHccccHHccccccccccccEEEEEEEEEEEccccccEEEEEEEEccccccccccccccccccccccccccHHEEEEccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHcccEEEEEEEEccccccEEEccccEEEEEccEEEcccEEEEEEcccccEEEEEEEcccccccccccEEccccHHHHHHHHHHHHHHccccEEEEEccccccccEEEEHHHHHHHHHccccEEEEEEEEEEcccccccEEEcEEEEEccccccccccccccEEEEEEccccccccccccccccEEccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEccccHHHHHHHHHHHHccccccccccccccEEEEEcccccEEEEccccHHHHHHHHEEEEEEcHHHHHHccccccccccccccccccccccccccccccccc

mklstsglcqqghegdnkclnselwhacagplvslptvgtrvvyfpqghseqvAATTnkevdshipnypnlppqlicqlhnvtmhadvetDEVYAQmtlqplspeeqkdtfvpielgipskqptnyfcktltasdtsthggfsvprraaekvfpsldfslqppaQELIARDLHDVEWKFrhifrgqpkrhlltTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIrrairpptvmpssvlssdSMHIGLLAAAAHAAATnscftvffnpraspsefvipLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMgtitgisdldpvrwsnshwrsvkvgwdestagerqprvslweieplttfpmypslfplrlkrpwhpstssfndnrdetasglnwlrggtgeqglttlnfqslgmfpwmqqrvepsflgndHNQQYQAMLAAGMQSGDPVRQQFMQlqqpfqylqqsgsqnplqLKQQQHLLQQLNSQAEDRAQqqqqpqqhmyHDALQIRTDELLQRqqsnlpspsfskanfmdsstEISVSISPmqnmlgslpegsgnllnfsgagpsmlrqqfpqqslgskyepsqvrdfvhsmslpssyngkdaavgtencntdsqnsVVFGVhidssglllpttvssfttsvdpgvssmplgdsgfhnsmygcmqdssellhnvgqidqltptrTFVKVYksgsvgrsldisRFSSYNELREELGQmfgiegkfedplrsgwqlVFVDRendvlllgddpweaFVSNVWYIKilspedvqkmgeqgvesfspssgqransrgncgrdpvgsley

mklstsglcqqghegDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELgipskqptNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIfrgqpkrhllTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTItgisdldpvrwsNSHWRSvkvgwdestagerqprvslweieplttFPMYPSLFPLRLKRPWHPstssfndnrdETASGLNWLRGGTGEQGLTTLNFQSLGMFPWMQQRVEPSFLGNDHNQQYQAMLAAGMQSGDPVRQQFMQLQQPFQYLQQSGSQNPLQLKQQQHLLQQLNSQAEDRAQQQQQPQQHMYHDALQIRTDELLQRQQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSLGSKYEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQNSVVFGVHIDSSGLLLPTTVSSFTTSVDPGVSSMPLGDSGFHNSMYGCMQDSSELLHNVGQIDQLTPTRTFVKvyksgsvgrsldisRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESfspssgqransrgncgrdpvgsley

MKLSTSGLCQQGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLaaaahaaaTNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPSTSSFNDNRDETASGLNWLRGGTGEQGLTTLNFQSLGMFPWMQQRVEPSFLGNDHNQQYQAMLAAGMQSGDPVRqqfmqlqqpfqylqqsgsqnplqlkqqqhllqqlnsqAEDRAqqqqqpqqHMYHDALQIRTDELLQRQQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSLGSKYEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQNSVVFGVHIDSSGLLLPTTVSSFTTSVDPGVSSMPLGDSGFHNSMYGCMQDSSELLHNVGQIDQLTPTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANSRGNCGRDPVGSLEY

*****************KCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAA*****VDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTL**********TFVPIELGIPSKQPTNYFCKTLTAS*******F********KVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPW****************GLNWLRGGTGEQGLTTLNFQSLGMFPWMQQRVEPSFLG***********************************************************************************************************************************************************************************************NSVVFGVHIDSSGLLLPTTVSSFTT***************FHNSMYGCMQDSSELLHNVGQIDQLTPTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILS***************************************

*********************SELWHACAGPLVSLPTVGTRVVYFPQGHSEQVA*************YPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPL************************FCKTLTASDTSTHGGFSVPRRAAEKVFPSLD******A**LIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAI***********************AAHAAATNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTT***************************************************************************************************************************************************************************************************************************************************************************************************************************************************SVGRSLDISRFSSYNELREELGQMFGIEGK****LRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKIL***********************************G****

MKLSTSGLCQQGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPSTSSFNDNRDETASGLNWLRGGTGEQGLTTLNFQSLGMFPWMQQRVEPSFLGNDHNQQYQAMLAAGMQSGDPVRQQFMQLQQPFQYLQQSGSQNPLQLKQQQHLLQQLN****************MYHDALQIRTDELLQRQQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQ***********PSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQNSVVFGVHIDSSGLLLPTTVSSFTTSVDPGVSSMPLGDSGFHNSMYGCMQDSSELLHNVGQIDQLTPTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQK*********************************

****************NKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLS******T***I*****SKQPTNYFCKTLTASD****GGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPW************ETAS*LNWL**********T****SLGMFPWMQ****PSFLG**HNQQYQAMLA**********************************************************************************************************************************************************************************************SG*****************************************************PTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKM********************************

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iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MKLSTSGLCQQGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPSTSSFNDNRDETASGLNWLRGGTGEQGLTTLNFQSLGMFPWMQQRVEPSFLGNDHNQQYQAMLAAGMQSGDPVRQQFMQLQQPFQYLQQSGSQNPLQxxxxxxxxxxxxxxxxxxxxxQQQPQQHMYHDALQIRTDELLQRQQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSLGSKYEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQNSVVFGVHIDSSGLLLPTTVSSFTTSVDPGVSSMPLGDSGFHNSMYGCMQDSSELLHNVGQIDQLTPTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANSRGNCGRDPVGSLEY

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		811	2.2.26 [Sep-21-2011]
Q9FGV1		811	Auxin response factor 8 O	yes	no	0.937	0.937	0.702	0.0
Q258Y5		816	Auxin response factor 12	N/A	no	0.926	0.920	0.638	0.0
Q0J951		818	Auxin response factor 12	yes	no	0.926	0.918	0.636	0.0
Q9ZTX8		935	Auxin response factor 6 O	no	no	0.543	0.471	0.795	0.0
Q6H6V4		908	Auxin response factor 6 O	no	no	0.549	0.491	0.795	0.0
A2X1A1		908	Auxin response factor 6 O	N/A	no	0.549	0.491	0.795	0.0
A2YG67		917	Auxin response factor 17	N/A	no	0.546	0.483	0.789	0.0
Q653U3		917	Auxin response factor 17	no	no	0.546	0.483	0.789	0.0
Q2QM84		899	Auxin response factor 25	no	no	0.575	0.519	0.743	0.0
A3B9A0		1055	Auxin response factor 16	no	no	0.517	0.398	0.651	1e-151

>sp\|Q9FGV1\|ARFH_ARATH Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2	Back alignment and function desciption

 Score = 1083 bits (2800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/820 (70%), Positives = 646/820 (78%), Gaps = 60/820 (7%)

Query: 1   MKLSTSGLCQQGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKE 60
           MKLSTSGL QQGHEG+ KCLNSELWHACAGPLVSLP+ G+RVVYFPQGHSEQVAATTNKE
Sbjct: 1   MKLSTSGLGQQGHEGE-KCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKE 59

Query: 61  VDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPS 120
           VD HIPNYP+LPPQLICQLHNVTMHADVETDEVYAQMTLQPL+PEEQK+TFVPIELGIPS
Sbjct: 60  VDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPEEQKETFVPIELGIPS 119

Query: 121 KQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFR 180
           KQP+NYFCKTLTASDTSTHGGFSVPRRAAEKVFP LD++LQPPAQELIARDLHDVEWKFR
Sbjct: 120 KQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKFR 179

Query: 181 HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVL 240
           HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSV+FI NEKNQL LGIR A RP T++PSSVL
Sbjct: 180 HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIRNEKNQLFLGIRHATRPQTIVPSSVL 239

Query: 241 SSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRM 300
           SSDSMHIGLLAAAAHA+ATNSCFTVFF+PRAS SEFVI L+KY+KAVFHTR+SVGMRFRM
Sbjct: 240 SSDSMHIGLLAAAAHASATNSCFTVFFHPRASQSEFVIQLSKYIKAVFHTRISVGMRFRM 299

Query: 301 LFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT 360
           LFETEESSVRRYMGTITGISDLD VRW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLT
Sbjct: 300 LFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT 359

Query: 361 TFPMYPSLFPLRLKRPWHPSTSSFNDNRDETASGLNWLRGGTGEQGLTT-LNFQSLGMFP 419
           TFPMYPSLFPLRLKRPWH  TSS  D R +  SGL WLRGG GEQ     LN+ S+G+FP
Sbjct: 360 TFPMYPSLFPLRLKRPWHAGTSSLPDGRGDLGSGLTWLRGGGGEQQGLLPLNYPSVGLFP 419

Query: 420 WMQQRVEPSFLGNDHNQQYQAMLAAGMQS---GDPVRQQFMQLQQP-FQYLQQSGSQNP- 474
           WMQQR++ S +G D+NQQYQAMLAAG+Q+   GDP+RQQF+QLQ+P  QYLQQS S N  
Sbjct: 420 WMQQRLDLSQMGTDNNQQYQAMLAAGLQNIGGGDPLRQQFVQLQEPHHQYLQQSASHNSD 479

Query: 475 LQLKQ------QQHLLQQLNSQAEDRAQQQQQPQQHM----------------------Y 506
           L L+Q       +HL+      A+ +   +  PQQ+M                      Y
Sbjct: 480 LMLQQQQQQQASRHLM-----HAQTQIMSENLPQQNMRQEVSNQPAGQQQQLQQPDQNAY 534

Query: 507 HDALQIRTDELLQ-RQQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLN 565
            +A +++   L Q +QQS +PSPSF K++F DSS + + + SP          G GNLLN
Sbjct: 535 LNAFKMQNGHLQQWQQQSEMPSPSFMKSDFTDSSNKFATTASPA--------SGDGNLLN 586

Query: 566 FSGAGPSMLRQQFPQQSLGSKYEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQNSV 625
           FS  G S+L    P+Q     + P     F   +SLP +Y GK  A+   N     QN  
Sbjct: 587 FSITGQSVL----PEQLTTEGWSPKASNTFSEPLSLPQAYPGKSLALEPGN----PQNPS 638

Query: 626 VFGVHIDSSGLLLPTTVSSFTTSV-DPGVSSMPLGDSGFHNSMYGCMQDSS-ELLHNVGQ 683
           +FGV  D SGL LP+TV  F +S  D   S M L DSGF NS+Y CMQD++ ELLH  GQ
Sbjct: 639 LFGVDPD-SGLFLPSTVPRFASSSGDAEASPMSLTDSGFQNSLYSCMQDTTHELLHGAGQ 697

Query: 684 IDQLTPTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVF 743
           I+    T+ FVKVYKSGSVGRSLDISRFSSY+ELREELG+MF IEG  EDPLRSGWQLVF
Sbjct: 698 INSSNQTKNFVKVYKSGSVGRSLDISRFSSYHELREELGKMFAIEGLLEDPLRSGWQLVF 757

Query: 744 VDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQG 783
           VD+END+LLLGDDPWE+FV+NVWYIKILSPEDV +MG+ G
Sbjct: 758 VDKENDILLLGDDPWESFVNNVWYIKILSPEDVHQMGDHG 797

Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q258Y5\|ARFL_ORYSI Auxin response factor 12 OS=Oryza sativa subsp. indica GN=ARF12 PE=2 SV=1	Back alignment and function description

>sp\|Q0J951\|ARFL_ORYSJ Auxin response factor 12 OS=Oryza sativa subsp. japonica GN=ARF12 PE=2 SV=1	Back alignment and function description

>sp\|Q9ZTX8\|ARFF_ARATH Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=1 SV=2	Back alignment and function description

>sp\|Q6H6V4\|ARFF_ORYSJ Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1	Back alignment and function description

>sp\|A2X1A1\|ARFF_ORYSI Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1	Back alignment and function description

>sp\|A2YG67\|ARFQ_ORYSI Auxin response factor 17 OS=Oryza sativa subsp. indica GN=ARF17 PE=2 SV=1	Back alignment and function description

>sp\|Q653U3\|ARFQ_ORYSJ Auxin response factor 17 OS=Oryza sativa subsp. japonica GN=ARF17 PE=2 SV=1	Back alignment and function description

>sp\|Q2QM84\|ARFY_ORYSJ Auxin response factor 25 OS=Oryza sativa subsp. japonica GN=ARF25 PE=2 SV=1	Back alignment and function description

>sp\|A3B9A0\|ARFP_ORYSJ Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		811
359476473		846	PREDICTED: auxin response factor 8-like	0.998	0.957	0.776	0.0
224079698		827	predicted protein [Populus trichocarpa]	0.970	0.951	0.771	0.0
356500980		846	PREDICTED: auxin response factor 8-like	0.997	0.956	0.753	0.0
356553218		842	PREDICTED: auxin response factor 8-like	0.998	0.961	0.750	0.0
356539752		843	PREDICTED: auxin response factor 8-like	0.998	0.960	0.741	0.0
255570473		826	Auxin response factor, putative [Ricinus	0.975	0.957	0.782	0.0
357491655		841	Auxin response factor [Medicago truncatu	0.997	0.961	0.743	0.0
224134659		799	predicted protein [Populus trichocarpa]	0.938	0.952	0.775	0.0
449506738		854	PREDICTED: auxin response factor 8-like	0.993	0.943	0.725	0.0
356569910		841	PREDICTED: auxin response factor 8-like	0.996	0.960	0.738	0.0

>gi\|359476473\|ref\|XP_002266678.2\| PREDICTED: auxin response factor 8-like [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1271 bits (3288), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/847 (77%), Positives = 722/847 (85%), Gaps = 37/847 (4%)

Query: 1   MKLSTSGLCQQ-GHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNK 59
           MKLSTSGL QQ GHEG+ KCLNSELWHACAGPLVSLPTVG+RVVYFPQGHSEQVAATTNK
Sbjct: 1   MKLSTSGLGQQQGHEGEKKCLNSELWHACAGPLVSLPTVGSRVVYFPQGHSEQVAATTNK 60

Query: 60  EVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIP 119
           EVD HIPNYP+LPPQLICQLHNVTMHADVETDEVYAQMTLQPL+P+EQKDTF+P+ELGIP
Sbjct: 61  EVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPVELGIP 120

Query: 120 SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKF 179
           SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFP LDFS QPPAQELIARDLHDVEWKF
Sbjct: 121 SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKF 180

Query: 180 RHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSV 239
           RHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRA RP TVMPSSV
Sbjct: 181 RHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSV 240

Query: 240 LSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFR 299
           LSSDSMHIGLLAAAAHAAATNSCFT+F+NPRASPSEFVIPL+KYVKAVFHTRVSVGMRFR
Sbjct: 241 LSSDSMHIGLLAAAAHAAATNSCFTIFYNPRASPSEFVIPLSKYVKAVFHTRVSVGMRFR 300

Query: 300 MLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPL 359
           MLFETEESSVRRYMGTITGISDLDPVRW NSHWRSVKVGWDESTAGERQPRVSLWEIEPL
Sbjct: 301 MLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPL 360

Query: 360 TTFPMYPSLFPLRLKRPWHPSTSSFNDNRDETASGLNWLRGGTGEQGLTTLNFQSLGMFP 419
           TTFPMYPSLFPLRLKRPWHP  SS +D+RDE A+GL WLRG TG+QGL +LNFQ++GMFP
Sbjct: 361 TTFPMYPSLFPLRLKRPWHPGASSLHDSRDEAANGLMWLRGETGDQGLQSLNFQTVGMFP 420

Query: 420 WMQQRVEPSFLGNDHNQQYQAMLAAGMQ---SGDPVRQQFMQLQQPFQYLQQSGSQN--- 473
           W QQR++P+FLGNDHNQQYQAMLAAG+Q   SGDP++QQ+MQ QQPFQYLQQ+GS N   
Sbjct: 421 WTQQRLDPTFLGNDHNQQYQAMLAAGLQNLGSGDPLKQQYMQFQQPFQYLQQTGSNNPLL 480

Query: 474 --PLQLKQQQHLLQQLNSQAEDRAQQQQQPQQ----------------HMYHDALQIRTD 515
               Q +  Q  + Q  S A+ +  Q   P+                 H Y ++ QI++D
Sbjct: 481 QQRQQPQVIQQTIPQHMSHAQTQILQDNLPRHLLQQQLNNQQEQPQQQHSYQESFQIQSD 540

Query: 516 ELLQRQQSNLPSPSFSKANFMDSSTEI-SVSISPMQNMLGSL-PEGSGNLLNFS-GAGPS 572
           +L QR Q N+PS SFSKA+F DS+T+  S++ S MQNMLGS+ PEGSGNLLNFS   G S
Sbjct: 541 QLQQRPQPNVPSLSFSKADFPDSNTKFSSITPSSMQNMLGSMCPEGSGNLLNFSRTTGQS 600

Query: 573 MLRQQFPQQSLGSKYEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQNSVVFGVHID 632
           ML +Q PQQ   +K+  SQ   F +S SLP  + GKDAAV  ENCN D+QN  +FGV+ID
Sbjct: 601 MLSEQPPQQPWATKFTHSQFNAFANSTSLP-PFTGKDAAVEPENCNLDAQNHTLFGVNID 659

Query: 633 SSGLLLPTTVSSF-TTSVDPGVSSMPLGDSGFHNSMYGCMQDSSELLHNVGQIDQLTPTR 691
           SSGLLLPTTV SF ++SVD  VSSMPLG SGF  S++GC+QD SELL N GQ+D  TP+R
Sbjct: 660 SSGLLLPTTVPSFGSSSVDADVSSMPLGASGFQGSLFGCVQDPSELLQNAGQVDPPTPSR 719

Query: 692 TFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVL 751
           TFVKVYKSGSVGRSLDI+RFSSY+ELREELGQMFGIEGK E+PLRSGWQLVFVDRENDVL
Sbjct: 720 TFVKVYKSGSVGRSLDITRFSSYHELREELGQMFGIEGKLENPLRSGWQLVFVDRENDVL 779

Query: 752 LLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVES-FSPSSGQRANSRGNCGRDPV---- 806
           LLGDDPWEAFV+NVWYIKILSPEDVQKMG+QG+ES FSP+S QR NS G   RD V    
Sbjct: 780 LLGDDPWEAFVNNVWYIKILSPEDVQKMGKQGIESGFSPNSAQRMNSSGTDDRDLVSGLP 839

Query: 807 --GSLEY 811
             GSLEY
Sbjct: 840 SAGSLEY 846

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224079698\|ref\|XP_002305917.1\| predicted protein [Populus trichocarpa] gi\|222848881\|gb\|EEE86428.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356500980\|ref\|XP_003519308.1\| PREDICTED: auxin response factor 8-like [Glycine max]	Back alignment and taxonomy information

>gi\|356553218\|ref\|XP_003544955.1\| PREDICTED: auxin response factor 8-like [Glycine max]	Back alignment and taxonomy information

>gi\|356539752\|ref\|XP_003538358.1\| PREDICTED: auxin response factor 8-like [Glycine max]	Back alignment and taxonomy information

>gi\|255570473\|ref\|XP_002526195.1\| Auxin response factor, putative [Ricinus communis] gi\|223534499\|gb\|EEF36199.1\| Auxin response factor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|357491655\|ref\|XP_003616115.1\| Auxin response factor [Medicago truncatula] gi\|355517450\|gb\|AES99073.1\| Auxin response factor [Medicago truncatula]	Back alignment and taxonomy information

>gi\|224134659\|ref\|XP_002327459.1\| predicted protein [Populus trichocarpa] gi\|222836013\|gb\|EEE74434.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449506738\|ref\|XP_004162834.1\| PREDICTED: auxin response factor 8-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356569910\|ref\|XP_003553137.1\| PREDICTED: auxin response factor 8-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		811
TAIR\|locus:2152642		811	ARF8 "auxin response factor 8"	0.557	0.557	0.849	1.2e-287
TAIR\|locus:2204237		935	ARF6 "auxin response factor 6"	0.557	0.483	0.772	2.8e-246
TAIR\|locus:2202205		1086	ARF19 "auxin response factor 1	0.548	0.409	0.582	2.1e-174
TAIR\|locus:2035454		902	MP "MONOPTEROS" [Arabidopsis t	0.441	0.396	0.622	9.3e-152
TAIR\|locus:2174013		859	ARF2 "auxin response factor 2"	0.503	0.474	0.478	7.6e-118
TAIR\|locus:2175098		788	ARF4 "auxin response factor 4"	0.456	0.469	0.502	6.9e-115
TAIR\|locus:2025991		665	ARF1 "auxin response factor 1"	0.440	0.536	0.513	7e-113
TAIR\|locus:2039124		622	ARF11 "auxin response factor 1	0.421	0.549	0.504	3.5e-109
TAIR\|locus:2076765		602	ARF18 "auxin response factor 1	0.441	0.594	0.5	1.5e-106
TAIR\|locus:2138096		638	ARF9 "auxin response factor 9"	0.453	0.576	0.476	5.8e-105

TAIR\|locus:2152642 ARF8 "auxin response factor 8" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2058 (729.5 bits), Expect = 1.2e-287, Sum P(2) = 1.2e-287
 Identities = 388/457 (84%), Positives = 415/457 (90%)

Query:     1 MKLSTSGLCQQGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKE 60
             MKLSTSGL QQGHEG+ KCLNSELWHACAGPLVSLP+ G+RVVYFPQGHSEQVAATTNKE
Sbjct:     1 MKLSTSGLGQQGHEGE-KCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKE 59

Query:    61 VDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPS 120
             VD HIPNYP+LPPQLICQLHNVTMHADVETDEVYAQMTLQPL+PEEQK+TFVPIELGIPS
Sbjct:    60 VDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPEEQKETFVPIELGIPS 119

Query:   121 KQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFR 180
             KQP+NYFCKTLTASDTSTHGGFSVPRRAAEKVFP LD++LQPPAQELIARDLHDVEWKFR
Sbjct:   120 KQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKFR 179

Query:   181 HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVL 240
             HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSV+FI NEKNQL LGIR A RP T++PSSVL
Sbjct:   180 HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIRNEKNQLFLGIRHATRPQTIVPSSVL 239

Query:   241 SSDSMHIGLLXXXXXXXXTNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRM 300
             SSDSMHIGLL        TNSCFTVFF+PRAS SEFVI L+KY+KAVFHTR+SVGMRFRM
Sbjct:   240 SSDSMHIGLLAAAAHASATNSCFTVFFHPRASQSEFVIQLSKYIKAVFHTRISVGMRFRM 299

Query:   301 LFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT 360
             LFETEESSVRRYMGTITGISDLD VRW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLT
Sbjct:   300 LFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT 359

Query:   361 TFPMYPSLFPLRLKRPWHPSTSSFNDNRDETASGLNWLRGGTGEQ-GLTTLNFQSLGMFP 419
             TFPMYPSLFPLRLKRPWH  TSS  D R +  SGL WLRGG GEQ GL  LN+ S+G+FP
Sbjct:   360 TFPMYPSLFPLRLKRPWHAGTSSLPDGRGDLGSGLTWLRGGGGEQQGLLPLNYPSVGLFP 419

Query:   420 WMQQRVEPSFLGNDHNQQYQAMLAAGMQS---GDPVR 453
             WMQQR++ S +G D+NQQYQAMLAAG+Q+   GDP+R
Sbjct:   420 WMQQRLDLSQMGTDNNQQYQAMLAAGLQNIGGGDPLR 456

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009725 "response to hormone stimulus" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0009908 "flower development" evidence=IGI

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR\|locus:2204237 ARF6 "auxin response factor 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2202205 ARF19 "auxin response factor 19" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2035454 MP "MONOPTEROS" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2174013 ARF2 "auxin response factor 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2175098 ARF4 "auxin response factor 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2025991 ARF1 "auxin response factor 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2039124 ARF11 "auxin response factor 11" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2076765 ARF18 "auxin response factor 18" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2138096 ARF9 "auxin response factor 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FGV1	ARFH_ARATH	No assigned EC number	0.7024	0.9371	0.9371	yes	no
Q0J951	ARFL_ORYSJ	No assigned EC number	0.6367	0.9260	0.9180	yes	no
Q258Y5	ARFL_ORYSI	No assigned EC number	0.6382	0.9260	0.9203	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.IV.3880.1	SubName- Full=Putative uncharacterized protein; (796 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		811
pfam06507		83	pfam06507, Auxin_resp, Auxin response factor	9e-43
pfam02362		97	pfam02362, B3, B3 DNA binding domain	5e-26
smart01019		96	smart01019, B3, B3 DNA binding domain	2e-24
cd10017		98	cd10017, B3_DNA, Plant-specific B3-DNA binding dom	5e-20
pfam02309		188	pfam02309, AUX_IAA, AUX/IAA family	1e-17
pfam09606		768	pfam09606, Med15, ARC105 or Med15 subunit of Media	6e-05
pfam09770		804	pfam09770, PAT1, Topoisomerase II-associated prote	4e-04
pfam13779		820	pfam13779, DUF4175, Domain of unknown function (DU	5e-04
pfam09770		804	pfam09770, PAT1, Topoisomerase II-associated prote	0.003

>gnl\|CDD\|191545 pfam06507, Auxin_resp, Auxin response factor	Back alignment and domain information

 Score =  149 bits (378), Expect = 9e-43
 Identities = 55/84 (65%), Positives = 69/84 (82%), Gaps = 1/84 (1%)

Query: 253 AAHAAATNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRY 312
           AAHAA+T S F VF+NPRAS SEFV+P  KY+KA+ +   SVGMRF+M FETE+SS RR+
Sbjct: 1   AAHAASTGSPFHVFYNPRASTSEFVVPYAKYLKAMNN-PFSVGMRFKMRFETEDSSERRF 59

Query: 313 MGTITGISDLDPVRWSNSHWRSVK 336
            GTI+G+SDLDP+RW NS WRS++
Sbjct: 60  SGTISGVSDLDPIRWPNSKWRSLQ 83

A conserved region of auxin-responsive transcription factors. Length = 83

>gnl\|CDD\|216995 pfam02362, B3, B3 DNA binding domain	Back alignment and domain information

>gnl\|CDD\|214977 smart01019, B3, B3 DNA binding domain	Back alignment and domain information

>gnl\|CDD\|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain	Back alignment and domain information

>gnl\|CDD\|216968 pfam02309, AUX_IAA, AUX/IAA family	Back alignment and domain information

>gnl\|CDD\|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	Back alignment and domain information

>gnl\|CDD\|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1	Back alignment and domain information

>gnl\|CDD\|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)	Back alignment and domain information

>gnl\|CDD\|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		811
PF06507		83	Auxin_resp: Auxin response factor; InterPro: IPR01	100.0
PF02309		215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF02362		100	B3: B3 DNA binding domain; InterPro: IPR003340 Two	99.68
KOG0644		1113	consensus Uncharacterized conserved protein, conta	99.32
PF09217		156	EcoRII-N: Restriction endonuclease EcoRII, N-termi	98.49
PF03754		114	DUF313: Domain of unknown function (DUF313) ; Inte	97.66
PF00564		84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	96.97
smart00666		81	PB1 PB1 domain. Phox and Bem1p domain, present in	96.29
cd05992		81	PB1 The PB1 domain is a modular domain mediating s	95.82
cd06407		82	PB1_NLP A PB1 domain is present in NIN like protei	95.5
cd06396		81	PB1_NBR1 The PB1 domain is an essential part of NB	95.1
cd06409		86	PB1_MUG70 The MUG70 protein is a product of the me	94.92
cd06398		91	PB1_Joka2 The PB1 domain is present in the Nicotia	94.91
cd06403		80	PB1_Par6 The PB1 domain is an essential part of Pa	91.53
cd06404		83	PB1_aPKC PB1 domain is an essential modular domain	91.22
cd06401		81	PB1_TFG The PB1 domain found in TFG protein, an on	88.79
cd06397		82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	88.69
cd06402		87	PB1_p62 The PB1 domain is an essential part of p62	86.54
cd06408		86	PB1_NoxR The PB1 domain is present in the Epichloe	85.89

>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors	Back alignment and domain information

Probab=100.00  E-value=2.2e-35  Score=261.47  Aligned_cols=83  Identities=65%  Similarity=1.048  Sum_probs=81.2

Q ss_pred             HHHHHhcCCeEEEEEecCCCCCcceechhHHHHhhhcCCCccccEEEEeeeccccccceeeEEEEEeccCCCCCCCCCCc
Q 003544          253 AAHAAATNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHW  332 (811)
Q Consensus       253 A~~aa~~~~~F~V~Y~Pras~sEFVVp~~ky~~a~~~~~w~~GmRFkM~fe~Eds~~~r~~GTI~gi~d~Dp~rWp~S~W  332 (811)
                      |+|||+++++|+|+||||++++|||||++||++|++ ++|++||||||+||+||+++++|+|||+||+|+||+|||+|+|
T Consensus         1 A~~aa~~~~~F~V~Y~PRa~~sEFVV~~~k~~~al~-~~~~~GmRfkM~fE~eds~~~~~~GtI~~v~~~dp~~w~~S~W   79 (83)
T PF06507_consen    1 AAHAAATGSPFEVFYYPRASPSEFVVPASKYDKALN-HPWSVGMRFKMRFETEDSSERRWQGTIVGVSDLDPIRWPGSKW   79 (83)
T ss_pred             ChhHhhcCCeEEEEECCCCCCcceEEEHHHHHHHhc-CCCCCCcEEEEEeccCCCccceeeeEEeEeeccCCCCCCCCCc
Confidence            689999999999999999999999999999999998 7999999999999999999999999999999999999999999


Q ss_pred             ccee
Q 003544          333 RSVK  336 (811)
Q Consensus       333 R~Lk  336 (811)
                      ||||
T Consensus        80 R~Lq   83 (83)
T PF06507_consen   80 RMLQ   83 (83)
T ss_pred             ccCc
Confidence            9997

The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []	Back alignment and domain information

>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species	Back alignment and domain information

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]	Back alignment and domain information

>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV	Back alignment and domain information

>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function	Back alignment and domain information

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins	Back alignment and domain information

>smart00666 PB1 PB1 domain	Back alignment and domain information

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity	Back alignment and domain information

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)	Back alignment and domain information

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62	Back alignment and domain information

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain	Back alignment and domain information

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein	Back alignment and domain information

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells	Back alignment and domain information

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells	Back alignment and domain information

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK	Back alignment and domain information

>cd06397 PB1_UP1 Uncharacterized protein 1	Back alignment and domain information

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover	Back alignment and domain information

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		811
1wid_A		130	Solution Structure Of The B3 Dna-Binding Domain Of		7e-07

>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130

Back alignment and structure

Iteration: 1

Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 43/87 (49%) Query: 127 FCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQ 186 F K +T SD +P+ AEK FP ++ L D++ W+FR+ + Sbjct: 14 FEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNS 73 Query: 187 PKRHLLTTGWSVFVSAKRLVAGDSVLF 213 + ++LT GWS FV K L AGD V F Sbjct: 74 SQSYVLTKGWSRFVKEKNLRAGDVVSF 100

PyMOL of 1wid

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		811
1wid_A		130	DNA-binding protein RAV1; DNA-binding domain, stru	5e-42
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130	Back alignment and structure

 Score =  148 bits (374), Expect = 5e-42
 Identities = 37/126 (29%), Positives = 55/126 (43%)

Query: 117 GIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVE 176
           G   +     F K +T SD        +P+  AEK FP    ++      L   D++   
Sbjct: 4   GSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKV 63

Query: 177 WKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMP 236
           W+FR+ +    + ++LT GWS FV  K L AGD V F  +      L I    R  + + 
Sbjct: 64  WRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDLD 123

Query: 237 SSVLSS 242
           +S  SS
Sbjct: 124 ASGPSS 129

PyMOL of 1wid

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 59.9 bits (144), Expect = 3e-09
 Identities = 81/643 (12%), Positives = 163/643 (25%), Gaps = 221/643 (34%)

Query: 57  TNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIEL 116
           + +E+D HI    +                                  EE    FV   L
Sbjct: 47  SKEEID-HIIMSKD------------------AVSGTLRLFWTLLSKQEEMVQKFVEEVL 87

Query: 117 GIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVE 176
                +  NY               F +     E          QP     +  +  D  
Sbjct: 88  -----RI-NY--------------KFLMSPIKTE--------QRQPSMMTRMYIEQRDRL 119

Query: 177 WKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAI---RP-P 232
           +    +F    K +         VS  RL              Q  L +R+A+   RP  
Sbjct: 120 YNDNQVF---AKYN---------VS--RL--------------QPYLKLRQALLELRPAK 151

Query: 233 TV----MPS---SVLSSDSMHIGLLAAAAHAAATNSCFTVF---FNPRASPSEFVIPLTK 282
            V    +     + ++ D          ++       F +F        SP   +  L K
Sbjct: 152 NVLIDGVLGSGKTWVALD-------VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 283 ---YVKAVFHTRVSVGMRFRMLFETEESSVRRYMGT---ITGISDLDPVRWSNSHWRSVK 336
               +   + +R       ++   + ++ +RR + +      +  L  V  +   W +  
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNAKAWNAFN 263

Query: 337 VG-------WDESTA----GERQPRVSLWEI--------------------------EPL 359
           +          +             +SL                             E L
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323

Query: 360 TTFPMYPSLFPLRLKRPWHPSTSSF--NDNRDETASGLNWLRGGTGEQGLTTLN------ 411
           TT P   S+    ++     +T     + N D+  + +        E  L  L       
Sbjct: 324 TTNPRRLSIIAESIRD--GLATWDNWKHVNCDKLTTII--------ESSLNVLEPAEYRK 373

Query: 412 -FQSLGMFP-------------W--MQQRVEPSFLGNDHNQQYQAMLAAGMQSGDPVRQQ 455
            F  L +FP             W  + +      +   H     +++    +        
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK---YSLVE---KQPKESTIS 427

Query: 456 FMQLQQPFQYLQQSGSQNPLQLKQQQH--LLQQLNSQAEDRAQQQQQPQ------QH-MY 506
              +    +   +      L+ +   H  ++   N      +     P        H  +
Sbjct: 428 IPSIY--LELKVK------LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479

Query: 507 H--DALQIRTDELLQRQQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSL-------- 556
           H  +        L +    +     F +      ST  + S   + N L  L        
Sbjct: 480 HLKNIEHPERMTLFRMVFLDF---RFLEQKIRHDSTAWNAS-GSILNTLQQLKFYKPYIC 535

Query: 557 ---PEGS---GNLLNFS-GAGPSMLRQQFP---QQSLGSKYEP 589
              P+       +L+F      +++  ++    + +L ++ E 
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		811
d1wida_		117	b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre	2e-33
d1na6a1		175	b.142.1.1 (A:4-178) Restriction endonuclease EcoRI	2e-22
d1yela1		102	b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid	1e-10

>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117	Back information, alignment and structure


class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  122 bits (307), Expect = 2e-33
 Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 2/110 (1%)

Query: 121 KQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFR 180
           +     F K +T SD        +P+  AEK FP    ++      L   D++   W+FR
Sbjct: 1   RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFR 60

Query: 181 HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIW--NEKNQLLLGIRRA 228
           + +    + ++LT GWS FV  K L AGD V F     +  QL +G +  
Sbjct: 61  YSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSR 110

PyMOL of d1wida_

>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175	Back information, alignment and structure

>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		811
d1wida_		117	DNA-binding protein RAV1 {Thale cress (Arabidopsis	99.94
d1na6a1		175	Restriction endonuclease EcoRII, N-terminal domain	99.87
d1yela1		102	At1g16640 {Thale cress (Arabidopsis thaliana) [Tax	99.29
d2bkfa1		85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	95.6
d1ip9a_		85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	92.36
d1oeyj_		105	Neutrophil cytosol factor 4 (p40phox component of	86.58

>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=4.2e-26  Score=184.85  Aligned_cols=109  Identities=30%  Similarity=0.476  Sum_probs=102.5

Q ss_pred             CCEEEEEECCCCCCCCCCCEEECHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHCC
Q ss_conf             84028984374789989922451424743099998899999708999746998389889980899702642462002112
Q 003544          123 PTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSA  202 (811)
Q Consensus       123 ~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~fP~Ld~~~~~p~q~L~~~Dl~G~~W~Fr~~yrg~prrhlLTtGWs~FV~~  202 (811)
                      ...+|.|+||+|||+++|||+||+++|+++||+++....++++.+.+.|.+|++|.|+|+||++.++|+|++||..||++
T Consensus         3 ~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~~~~~~~l~~GW~~Fv~~   82 (117)
T d1wida_           3 AEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKE   82 (117)
T ss_dssp             CEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHH
T ss_pred             CCEEEEEEECCHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEEECCHHHHHHH
T ss_conf             76479999111200898889977899997389543456777079999959999999999998899834774577998887


Q ss_pred             CCCCCCCEEEEEEC--CCCCEEEEEEECCCC
Q ss_conf             58877988999982--588389999935899
Q 003544          203 KRLVAGDSVLFIWN--EKNQLLLGIRRAIRP  231 (811)
Q Consensus       203 K~LvaGDsVvF~R~--~~G~L~vGIRRa~r~  231 (811)
                      ++|++||.|+|+++  ++++++|++||+...
T Consensus        83 ~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~~  113 (117)
T d1wida_          83 KNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS  113 (117)
T ss_dssp             TTCCTTCEEEEEECCSSSCCEEEEEECCCSC
T ss_pred             CCCCCCCEEEEEEEECCCCEEEEEEEECCCC
T ss_conf             4999799999999818998899999999999

PyMOL of d1wida_

>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure