Citrus Sinensis ID: 003545

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-

MSSLNLLFFVLIFTALPHPFVSKLEGIDVLLDRLDSKRVNSSVQESAAKAVLQRLLPTHVNSFQFKIVSKDVCGGSSCFLIDNYKRTSQNEPEITIKGTTAVEITSGLHWYIKYWCGAHVSWEKTGGFQIVSVPKPGSLPHVTDGGVKIQRPVPWNYYQNVVTSSYSYVWWEWERWEKEIDWMALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDTFNENTPPTNDTNYISSLGAAVYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPLGKMIVLDLFAEVKPIWRTSSQFYGAPYVWCMLHNFGGNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQNPVVYELMSEMAFRNEKVQVLEWLKTYAHRRYGKAVPEVEATWEILYHTVYNCTDGIADHNTDFIVKFPDWDPSLLSGSAISKRDQMHALHALPGPRRFLSEENSDMPQAHLWYSNQELIKGLKLFLNAGNALAGCATYRYDLVDITRQALSKLANQVYMDAVIAFQHKDASAFNIHSQKFLQLIKDIDELLASNDNFLLGTWLESAKKLATNPSEMIQYEYNARTQVTMWYDTNITTQSKLHDYANKFWSGLLVDYYLPRASTYFDYMSKSLREKSEFQVDRWRQQWVFISISWQSNWKTGTKNYPIRAKGDSIAIAKVLYDKYFGQQLIK

ccHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccEEEEEEEccccccccEEEEEccccccccccEEEEEEccHHHHHHHHHHHHHHHHcccEEcccccccccccccccccccccccccEEEEcccccEEEccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccHHHHHHHccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccEEccccccccccHHHHHHccccEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEccccccccccccccHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccHHHHHHHHccccccEEEEEccccccccccccccccccccccEEcccccccccccccHHHHHccHHHHHHcccccEEEEEEccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccEEcccccccccccccccccccHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccc

cccHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccHcHHHHHHHHHHHcccHcccEEEEEEcccccccccEEEEEEcccccccccEEEEEcccHHHHHHHHHHHHHHHHccEEEEccccccccccccccccccccccccEEEEccccEEEEEEEcccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccEcccccccccHHHHHHccccEEEEccccccccccccccccEEcccccHHHHHHHHHHHHHHHHHHcccccEEccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEHHHHccccHcccccHHHHHHHccccccEEEEEccccccccEEcccccccccEEEEEEccccccccccccHHHHHccHHHHHHcccccEEEEEccHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcHHHccc

MSSLNLLFFVLIFTalphpfvsklEGIDVLLDrldskrvnsSVQESAAKAVLQRLlpthvnsfQFKIVskdvcggsscflidnykrtsqnepeitikgtTAVEITSGLHWYIKYWCGAhvswektggfqivsvpkpgslphvtdggvkiqrpvpwnyyqnVVTSSYSYVWWEWERWEKEIDWMALQginlplafngQEAIWQKVFMNFNVTmedlndffsgpAFLAWARMgnlhgwggplaQNWLNQQLVLQKKIVSRMLElgmtpvlpsfagnvpaalkkifpsanitrlgdwntvdrnprwcctylldptdplFVEIGEAFIKQQILeygdvtdiyncdtfnentpptndtnyISSLGAAVYKAMSEGDKDAVWLMQGwlfysdsafwkppqmkallhsvplgKMIVLDLFAevkpiwrtssqfygapYVWCMLhnfggnieiygildsiasgpvdarvsensTMVGVGMCMEGIEQNPVVYELMSEMAFRNEKVQVLEWLKTYAHrrygkavpeVEATWEILYHTVYnctdgiadhntdfivkfpdwdpsllsgsaiskrdqmhalhalpgprrflseensdmpqahLWYSNQELIKGLKLFLNAGNALAGCATYRYDLVDITRQALSKLANQVYMDAVIAFQhkdasafniHSQKFLQLIKDIDELLASNDNFLLGTWLESAKKLATNPSEMIQYEYNARTQVtmwydtnittqskLHDYANKFWSGLLVDYYLPRASTYFDYMSkslreksefQVDRWRQQWVFISISwqsnwktgtknypirakgDSIAIAKVLYDKYFGQQLIK

MSSLNLLFFVLIFTALPHPFVSKLEGIDVLLDRLDSKRVNSSVQESAAKAVLQRLLPTHVNSFQFKIVSKDVCGGSSCFLIDNYkrtsqnepeitikgTTAVEITSGLHWYIKYWCGAHVSWEKTGGFQIVSVPKpgslphvtdggvkiqrpvpwnyyqnVVTSSYSYVWWEWERWEKEIDWMALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPsanitrlgdwntvdrnPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDTFNENTPPTNDTNYISSLGAAVYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPLGKMIVLDLFAEVKPIWRTSSQFYGAPYVWCMLHNFGGNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQNPVVYELMSEMAFRNEKVQVLEWLKTYAHRRYGKAVPEVEATWEILYHTVYNCTDGIADHNTDFIVKFPDWDPSLLSGSAISKRDQMHALHALPGPRRFLSEENSDMPQAHLWYSNQELIKGLKLFLNAGNALAGCATYRYDLVDITRQALSKLANQVYMDAVIAFQHKDASAFNIHSQKFLQLIKDIDELLASNDNFLLGTWLESAKKLATNPSEMIQYEYNARTQVTMWYDTNITTQSKLHDYANKFWSGLLVDYYLPRASTYFDYMSKSLREKSEFQVDRWRQQWVFIsiswqsnwktgtknypirakGDSIAIAKVLYDKYFGQQLIK

***LNLLFFVLIFTALPHPFVSKLEGIDVLLDRLDS**********AAKAVLQRLLPTHVNSFQFKIVSKDVCGGSSCFLIDNYKRTSQNEPEITIKGTTAVEITSGLHWYIKYWCGAHVSWEKTGGFQIVSVPKPGSLPHVTDGGVKIQRPVPWNYYQNVVTSSYSYVWWEWERWEKEIDWMALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDTFNENTPPTNDTNYISSLGAAVYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPLGKMIVLDLFAEVKPIWRTSSQFYGAPYVWCMLHNFGGNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQNPVVYELMSEMAFRNEKVQVLEWLKTYAHRRYGKAVPEVEATWEILYHTVYNCTDGIADHNTDFIVKFPDWDPSLLS********************************AHLWYSNQELIKGLKLFLNAGNALAGCATYRYDLVDITRQALSKLANQVYMDAVIAFQHKDASAFNIHSQKFLQLIKDIDELLASNDNFLLGTWLESAKKLATNPSEMIQYEYNARTQVTMWYDTNITTQSKLHDYANKFWSGLLVDYYLPRASTYFDYMSKSLREKSEFQVDRWRQQWVFISISWQSNWKTGTKNYPIRAKGDSIAIAKVLYDKYFGQQ***

*SSLNLLFFVLIFTALPHPFVSKLEGIDVLLDRLD************AKAVLQRLLPTHVNSFQFKIVSKDVCGGSSCFLIDNYKRTSQNEPEITIKGTTAVEITSGLHWYIKYWCGAHVSWEKTGGFQIVSVPKPGSLPHVTDGGVKIQRPVPWNYYQNVVTSSYSYVWWEWERWEKEIDWMALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDTFNENTPPTNDTNYISSLGAAVYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPLGKMIVLDLFAEVKPIWRTSSQFYGAPYVWCMLHNFGGNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQNPVVYELMSEMAFRNEKVQVLEWLKTYAHRRYGKAVPEVEATWEILYHTVYNCTDGIADHNTDFIVKFPDWDPSLLSGSAISKRDQMHALHALPGPRRFLSEENSDMPQAHLWYSNQELIKGLKLFLNAGNALAGCATYRYDLVDITRQALSKLANQVYMDAVIAFQHKDASAFNIHSQKFLQLIKDIDELLASNDNFLLGTWLESAKKLATNPSEMIQYEYNARTQVTMWYDTNITTQSKLHDYANKFWSGLLVDYYLPRASTYFDYMSKSLREKSEFQVDRWRQQWVFISISWQSNWKTGTKNYPIRAKGDSIAIAKVLYDKYFGQ****

MSSLNLLFFVLIFTALPHPFVSKLEGIDVLLDRLDSK*********AAKAVLQRLLPTHVNSFQFKIVSKDVCGGSSCFLIDNYKRTSQNEPEITIKGTTAVEITSGLHWYIKYWCGAHVSWEKTGGFQIVSVPKPGSLPHVTDGGVKIQRPVPWNYYQNVVTSSYSYVWWEWERWEKEIDWMALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDTFNENTPPTNDTNYISSLGAAVYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPLGKMIVLDLFAEVKPIWRTSSQFYGAPYVWCMLHNFGGNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQNPVVYELMSEMAFRNEKVQVLEWLKTYAHRRYGKAVPEVEATWEILYHTVYNCTDGIADHNTDFIVKFPDWDPSLLSGSAISKRDQMHALHALPGPRRFLSEENSDMPQAHLWYSNQELIKGLKLFLNAGNALAGCATYRYDLVDITRQALSKLANQVYMDAVIAFQHKDASAFNIHSQKFLQLIKDIDELLASNDNFLLGTWLESAKKLATNPSEMIQYEYNARTQVTMWYDTNITTQSKLHDYANKFWSGLLVDYYLPRASTYFDYMSKSLREKSEFQVDRWRQQWVFISISWQSNWKTGTKNYPIRAKGDSIAIAKVLYDKYFGQQLIK

*SSLNLLFFVLIFTALPHPFVSKLEGIDVLLDRLDSKRVNSSVQESAAKAVLQRLLPTHVNSFQFKIVSKDVCGGSSCFLIDNYKRTSQNEPEITIKGTTAVEITSGLHWYIKYWCGAHVSWEKTGGFQIVSVPKPGSLPHVTDGGVKIQRPVPWNYYQNVVTSSYSYVWWEWERWEKEIDWMALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDTFNENTPPTNDTNYISSLGAAVYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPLGKMIVLDLFAEVKPIWRTSSQFYGAPYVWCMLHNFGGNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQNPVVYELMSEMAFRNEKVQVLEWLKTYAHRRYGKAVPEVEATWEILYHTVYNCTDGIADHNTDFIVKFPDWDPSLLSGSAISKRDQMHALHALPGPRRFLSEENSDMPQAHLWYSNQELIKGLKLFLNAGNALAGCATYRYDLVDITRQALSKLANQVYMDAVIAFQHKDASAFNIHSQKFLQLIKDIDELLASNDNFLLGTWLESAKKLATNPSEMIQYEYNARTQVTMWYDTNITTQSKLHDYANKFWSGLLVDYYLPRASTYFDYMSKSLREKSEFQVDRWRQQWVFISISWQSNWKTGTKNYPIRAKGDSIAIAKVLYDKYFGQQL**

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		811	2.2.26 [Sep-21-2011]
P54802		743	Alpha-N-acetylglucosamini	yes	no	0.827	0.903	0.402	1e-162

>sp\|P54802\|ANAG_HUMAN Alpha-N-acetylglucosaminidase OS=Homo sapiens GN=NAGLU PE=1 SV=2	Back alignment and function desciption

 Score =  572 bits (1474), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 293/728 (40%), Positives = 443/728 (60%), Gaps = 57/728 (7%)

Query: 81  IDNYKRTSQNEPEITIKGTTAVEITSGLHWYIKYWCGAHVSWEKTGGFQIVSVPKPGSLP 140
           +D Y         + ++G+T V   +GLH Y++ +CG HV+W    G Q+  +P+P  LP
Sbjct: 62  LDTYSLGGGGAARVRVRGSTGVAAAAGLHRYLRDFCGCHVAWS---GSQL-RLPRP--LP 115

Query: 141 HVTDGGVKIQRPVPWNYYQNVVTSSYSYVWWEWERWEKEIDWMALQGINLPLAFNGQEAI 200
            V  G +    P  + YYQNV T SYS+VWW+W RWE+EIDWMAL GINL LA++GQEAI
Sbjct: 116 AVP-GELTEATPNRYRYYQNVCTQSYSFVWWDWARWEREIDWMALNGINLALAWSGQEAI 174

Query: 201 WQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQKKIVSRML 260
           WQ+V++   +T  ++N+FF+GPAFLAW RMGNLH W GPL  +W  +QL LQ +++ +M 
Sbjct: 175 WQRVYLALGLTQAEINEFFTGPAFLAWGRMGNLHTWDGPLPPSWHIKQLYLQHRVLDQMR 234

Query: 261 ELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIG 320
             GMTPVLP+FAG+VP A+ ++FP  N+T++G W     N  + C++LL P DP+F  IG
Sbjct: 235 SFGMTPVLPAFAGHVPEAVTRVFPQVNVTKMGSWGHF--NCSYSCSFLLAPEDPIFPIIG 292

Query: 321 EAFIKQQILEYGDVTDIYNCDTFNENTPPTNDTNYISSLGAAVYKAMSEGDKDAVWLMQG 380
             F+++ I E+G    IY  DTFNE  PP+++ +Y+++   AVY+AM+  D +AVWL+QG
Sbjct: 293 SLFLRELIKEFG-TDHIYGADTFNEMQPPSSEPSYLAAATTAVYEAMTAVDTEAVWLLQG 351

Query: 381 WLFYSDSAFWKPPQMKALLHSVPLGKMIVLDLFAEVKPIWRTSSQFYGAPYVWCMLHNFG 440
           WLF     FW P Q++A+L +VP G+++VLDLFAE +P++  ++ F G P++WCMLHNFG
Sbjct: 352 WLFQHQPQFWGPAQIRAVLGAVPRGRLLVLDLFAESQPVYTRTASFQGQPFIWCMLHNFG 411

Query: 441 GNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQNPVVYELMSEMAFRNEKVQVL 500
           GN  ++G L+++  GP  AR+  NSTMVG GM  EGI QN VVY LM+E+ +R + V  L
Sbjct: 412 GNHGLFGALEAVNGGPEAARLFPNSTMVGTGMAPEGISQNEVVYSLMAELGWRKDPVPDL 471

Query: 501 -EWLKTYAHRRYGKAVPEVEATWEILYHTVYNCT-DGIADHNTDFIVKFPDWDPSLLSGS 558
             W+ ++A RRYG + P+  A W +L  +VYNC+ +    HN   +V+     PSL   +
Sbjct: 472 AAWVTSFAARRYGVSHPDAGAAWRLLLRSVYNCSGEACRGHNRSPLVR----RPSLQMNT 527

Query: 559 AISKRDQMHALHALPGPRRFLSEENSDMPQAHLWYSNQELIKGLKLFLNAGNALAGCATY 618
           +I                               WY+  ++ +  +L L +  +LA    +
Sbjct: 528 SI-------------------------------WYNRSDVFEAWRLLLTSAPSLATSPAF 556

Query: 619 RYDLVDITRQALSKLANQVYMDAVIAFQHKD-ASAFNIHSQKFLQLIKDIDELLASNDNF 677
           RYDL+D+TRQA+ +L +  Y +A  A+  K+ AS          +L+  +DE+LAS+  F
Sbjct: 557 RYDLLDLTRQAVQELVSLYYEEARSAYLSKELASLLRAGGVLAYELLPALDEVLASDSRF 616

Query: 678 LLGTWLESAKKLATNPSEMIQYEYNARTQVTMWYDTNITTQSKLHDYANKFWSGLLVDYY 737
           LLG+WLE A+  A + +E   YE N+R Q+T+W       +  + DYANK  +GL+ +YY
Sbjct: 617 LLGSWLEQARAAAVSEAEADFYEQNSRYQLTLW-----GPEGNILDYANKQLAGLVANYY 671

Query: 738 LPRASTYFDYMSKSLREKSEFQVDRWRQQWVFISISWQSNWKTGTKNYPIRAKGDSIAIA 797
            PR   + + +  S+ +   FQ  ++ +  VF     +  +    + YP + +GD++ +A
Sbjct: 672 TPRWRLFLEALVDSVAQGIPFQQHQFDKN-VF---QLEQAFVLSKQRYPSQPRGDTVDLA 727

Query: 798 KVLYDKYF 805
           K ++ KY+
Sbjct: 728 KKIFLKYY 735


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.135    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 315,093,310
Number of Sequences: 539616
Number of extensions: 13603827
Number of successful extensions: 28316
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 28306
Number of HSP's gapped (non-prelim): 4
length of query: 811
length of database: 191,569,459
effective HSP length: 126
effective length of query: 685
effective length of database: 123,577,843
effective search space: 84650822455
effective search space used: 84650822455
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)

Involved in the degradation of heparan sulfate.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 5EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		811
224106113		806	predicted protein [Populus trichocarpa]	0.964	0.970	0.793	0.0
297736304		868	unnamed protein product [Vitis vinifera]	0.981	0.917	0.745	0.0
225450036		803	PREDICTED: alpha-N-acetylglucosaminidase	0.981	0.991	0.745	0.0
356534602		807	PREDICTED: alpha-N-acetylglucosaminidase	0.991	0.996	0.737	0.0
357458267		832	Alpha-N-acetylglucosaminidase [Medicago	0.969	0.944	0.705	0.0
357458271		807	Alpha-N-acetylglucosaminidase [Medicago	0.939	0.944	0.698	0.0
297807393		806	alpha-N-acetylglucosaminidase family [Ar	0.955	0.961	0.713	0.0
15240689		806	alpha-N-acetylglucosaminidase [Arabidops	0.956	0.962	0.705	0.0
449436325		774	PREDICTED: alpha-N-acetylglucosaminidase	0.924	0.968	0.701	0.0
222624949		812	hypothetical protein OsJ_10898 [Oryza sa	0.929	0.928	0.704	0.0

>gi\|224106113\|ref\|XP_002314048.1\| predicted protein [Populus trichocarpa] gi\|222850456\|gb\|EEE88003.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1322 bits (3421), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/788 (79%), Positives = 696/788 (88%), Gaps = 6/788 (0%)

Query: 21  VSKLEGIDVLLDRLDSKRVNSSVQESAAKAVLQRLLPTHVNSFQFKIVSKDVCGGSSCFL 80
           +S+ E ID LL RLDSKR +SS QESAAKAVL+RLLP+H++SF FKIVSKDVCGG SCFL
Sbjct: 23  LSRPEAIDSLLKRLDSKRASSSDQESAAKAVLKRLLPSHIHSFLFKIVSKDVCGGHSCFL 82

Query: 81  IDNY-KRTSQNEPEITIKGTTAVEITSGLHWYIKYWCGAHVSWEKTGGFQIVSVPKPGSL 139
           I+NY K +S N PEI+IKGTTAVEI SGLHWY+KYWCGAHVSW+KTGG QI S+PKPGSL
Sbjct: 83  INNYYKESSGNGPEISIKGTTAVEIASGLHWYLKYWCGAHVSWDKTGGVQIASIPKPGSL 142

Query: 140 PHVTDGGVKIQRPVPWNYYQNVVTSSYSYVWWEWERWEKEIDWMALQGINLPLAFNGQEA 199
           PHV D GV IQRPVPWNYYQNVVTSSYSYVWW WERWEKE+DWMALQGINLPLAF GQEA
Sbjct: 143 PHVKDKGVMIQRPVPWNYYQNVVTSSYSYVWWNWERWEKELDWMALQGINLPLAFTGQEA 202

Query: 200 IWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQKKIVSRM 259
           IWQKVFMN N+T EDLNDFF GPAFLAWARMGNLHGWGGPL+QNWL+QQL LQK+I+SRM
Sbjct: 203 IWQKVFMNLNITTEDLNDFFGGPAFLAWARMGNLHGWGGPLSQNWLDQQLCLQKQILSRM 262

Query: 260 LELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEI 319
           LELGMTPVLPSF+GNVPAALKKIFPSANITRLGDWNTVD+NPRWCCTYLL+P+DPLFVEI
Sbjct: 263 LELGMTPVLPSFSGNVPAALKKIFPSANITRLGDWNTVDKNPRWCCTYLLNPSDPLFVEI 322

Query: 320 GEAFIKQQILEYGDVTDIYNCDTFNENTPPTNDTNYISSLGAAVYKAMSEGDKDAVWLMQ 379
           GEAFI+QQ+ EYGDVTDIYNCDTFNEN+PPT+D  YISSLGAAVYKAMS GDKDAVWLMQ
Sbjct: 323 GEAFIRQQVKEYGDVTDIYNCDTFNENSPPTSDPAYISSLGAAVYKAMSRGDKDAVWLMQ 382

Query: 380 GWLFYSDSAFWKPPQMKALLHSVPLGKMIVLDLFAEVKPIWRTSSQFYGAPYVWCMLHNF 439
           GWLFYSDSAFWKPPQM+ALLHSVP GKMIVLDLFAE KPIW+ SSQFYG PYVWC+LHNF
Sbjct: 383 GWLFYSDSAFWKPPQMQALLHSVPFGKMIVLDLFAEAKPIWKNSSQFYGTPYVWCLLHNF 442

Query: 440 GGNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQNPVVYELMSEMAFRNEKVQV 499
           GGNIE+YGILD+I+SGPVDAR+ ENSTMVGVGMCMEGIE NPVVYELMSEMAFR+ K QV
Sbjct: 443 GGNIEMYGILDAISSGPVDARIIENSTMVGVGMCMEGIEHNPVVYELMSEMAFRSGKPQV 502

Query: 500 LEWLKTYAHRRYGKAVPEVEATWEILYHTVYNCTDGIADHNTDFIVKFPDWDPSLLSGSA 559
           LEWLKTY+ RRYGKAV +V A W+ILYHT+YNCTDGIADHNTDFIVKFPDWDPSL SGS 
Sbjct: 503 LEWLKTYSRRRYGKAVRQVVAAWDILYHTIYNCTDGIADHNTDFIVKFPDWDPSLHSGSN 562

Query: 560 ISKRDQMHALHALPGPRRFLSEE-NSDMPQAHLWYSNQELIKGLKLFLNAGNALAGCATY 618
           IS++D M  L    G RRFL +E +SD P+AHLWYS QE+I+ L LFL+AGN LAG  TY
Sbjct: 563 ISEQDNMRILLTSSGTRRFLFQETSSDFPEAHLWYSTQEVIQALWLFLDAGNDLAGSPTY 622

Query: 619 RYDLVDITRQALSKLANQVYMDAVIAFQHKDASAFNIHSQKFLQLIKDIDELLASNDNFL 678
           RYDLVD+TRQ LSKLANQVY DA+IAF+ KDA A N+H QKFLQ+IKDID LLAS+DNFL
Sbjct: 623 RYDLVDLTRQVLSKLANQVYRDAMIAFRRKDARALNLHGQKFLQIIKDIDVLLASDDNFL 682

Query: 679 LGTWLESAKKLATNPSEMIQYEYNARTQVTMWYDTNITTQSKLHDYANKFWSGLLVDYYL 738
           LGTWLESAKKLA +P++M  YE+NARTQVTMWYDT  T QS+LHDYANKFWSGLL DYYL
Sbjct: 683 LGTWLESAKKLAVDPNDMKLYEWNARTQVTMWYDTTKTNQSQLHDYANKFWSGLLEDYYL 742

Query: 739 PRASTYFDYMSKSLREKSEFQVDRWRQQWVFISISWQSNWKTGTKNYPIRAKGDSIAIAK 798
           PRASTYF ++ KSL E   F++  WR++W+  S  WQ++    TK YP++AKGD++AIAK
Sbjct: 743 PRASTYFGHLMKSLEENKNFKLTEWRKEWIAFSNKWQAD----TKIYPVKAKGDALAIAK 798

Query: 799 VLYDKYFG 806
            LY KYFG
Sbjct: 799 ALYRKYFG 806

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297736304\|emb\|CBI24942.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225450036\|ref\|XP_002273084.1\| PREDICTED: alpha-N-acetylglucosaminidase-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356534602\|ref\|XP_003535842.1\| PREDICTED: alpha-N-acetylglucosaminidase-like [Glycine max]	Back alignment and taxonomy information

>gi\|357458267\|ref\|XP_003599414.1\| Alpha-N-acetylglucosaminidase [Medicago truncatula] gi\|355488462\|gb\|AES69665.1\| Alpha-N-acetylglucosaminidase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357458271\|ref\|XP_003599416.1\| Alpha-N-acetylglucosaminidase [Medicago truncatula] gi\|355488464\|gb\|AES69667.1\| Alpha-N-acetylglucosaminidase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297807393\|ref\|XP_002871580.1\| alpha-N-acetylglucosaminidase family [Arabidopsis lyrata subsp. lyrata] gi\|297317417\|gb\|EFH47839.1\| alpha-N-acetylglucosaminidase family [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|15240689|ref|NP_196873.1| alpha-N-acetylglucosaminidase [Arabidopsis thaliana] gi|9758035|dbj|BAB08696.1| alpha-N-acetylglucosaminidase [Arabidopsis thaliana] gi|19423948|gb|AAL87291.1| putative alpha-N-acetylglucosaminidase [Arabidopsis thaliana] gi|21436231|gb|AAM51254.1| putative alpha-N-acetylglucosaminidase [Arabidopsis thaliana] gi|332004545|gb|AED91928.1| alpha-N-acetylglucosaminidase [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|449436325\|ref\|XP_004135943.1\| PREDICTED: alpha-N-acetylglucosaminidase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|222624949\|gb\|EEE59081.1\| hypothetical protein OsJ_10898 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		811
TAIR\|locus:2173209		806	CYL1 "AT5G13690" [Arabidopsis	0.988	0.995	0.691	1.80000021762e-317
RGD\|1564228		739	Naglu "N-acetylglucosaminidase	0.610	0.669	0.458	1.4e-159
UNIPROTKB\|F1S1D7		744	NAGLU "Uncharacterized protein	0.621	0.677	0.456	1.3e-158
UNIPROTKB\|P54802		743	NAGLU "Alpha-N-acetylglucosami	0.632	0.690	0.444	9e-156
UNIPROTKB\|A6QM01		667	NAGLU "NAGLU protein" [Bos tau	0.604	0.734	0.452	1.2e-138
UNIPROTKB\|H9L296		601	H9L296 "Uncharacterized protei	0.477	0.643	0.5	2.5e-134
DICTYBASE\|DDB_G0291998		798	naglu "alpha-N-acetylglucosami	0.636	0.646	0.415	5.5e-128
FB\|FBgn0014417		778	CG13397 [Drosophila melanogast	0.530	0.552	0.389	2.9e-116

TAIR\|locus:2173209 CYL1 "AT5G13690" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3044 (1076.6 bits), Expect = 1.8e-317, P = 1.8e-317
 Identities = 559/808 (69%), Positives = 662/808 (81%)

Query:     1 MSSLNLLFFVLIFTALPHPFVSKLEG-IDVLLDRLDSKRVNSSVQESAAKAVLQRLLPTH 59
             M S+ L+  VL+  +     VSK    ID LLDRLDS    SSVQESAAK +LQRLLPTH
Sbjct:     1 MHSIKLVLLVLLIISFHSQTVSKHHPTIDGLLDRLDSLLPTSSVQESAAKGLLQRLLPTH 60

Query:    60 VNSFQFKIVSKDVCGGSSCFLIDNYKRTSQNEPEITIKGTTAVEITSGLHWYIKYWCGAH 119
               SF+ +I+SKD CGG+SCF+I+NY    +  PEI IKGTT VEI SGLHWY+KY C AH
Sbjct:    61 SQSFELRIISKDACGGTSCFVIENYDGPGRIGPEILIKGTTGVEIASGLHWYLKYKCNAH 120

Query:   120 VSWEKTGGFQIVSVPKPGSLPHVTDGGVKIQRPVPWNYYQNVVTSSYSYVWWEWERWEKE 179
             VSW+KTGG Q+ SVP+PG LP +    + I+RPVPWNYYQNVVTSSYSYVWW WERWE+E
Sbjct:   121 VSWDKTGGIQVASVPQPGHLPRIDSKRIFIRRPVPWNYYQNVVTSSYSYVWWGWERWERE 180

Query:   180 IDWMALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGP 239
             IDWMALQGINLPLAF GQEAIWQKVF  FN++ EDL+D+F GPAFLAWARMGNLH WGGP
Sbjct:   181 IDWMALQGINLPLAFTGQEAIWQKVFKRFNISKEDLDDYFGGPAFLAWARMGNLHAWGGP 240

Query:   240 LAQNWLNQQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDR 299
             L++NWL+ QL+LQK+I+SRML+ GMTPVLPSF+GNVP+AL+KI+P ANITRL +WNTVD 
Sbjct:   241 LSKNWLDDQLLLQKQILSRMLKFGMTPVLPSFSGNVPSALRKIYPEANITRLDNWNTVDG 300

Query:   300 NPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDTFNENTPPTNDTNYISSL 359
             + RWCCTYLL+P+DPLF+EIGEAFIKQQ  EYG++T+IYNCDTFNENTPPT++  YISSL
Sbjct:   301 DSRWCCTYLLNPSDPLFIEIGEAFIKQQTEEYGEITNIYNCDTFNENTPPTSEPEYISSL 360

Query:   360 GAAVYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPLGKMIVLDLFAEVKPI 419
             GAAVYKAMS+G+K+AVWLMQGWLF SDS FWKPPQ+KALLHSVP GKMIVLDL+AEVKPI
Sbjct:   361 GAAVYKAMSKGNKNAVWLMQGWLFSSDSKFWKPPQLKALLHSVPFGKMIVLDLYAEVKPI 420

Query:   420 WRTSSQFYGAPYVWCMLHNFGGNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQ 479
             W  S+QFYG PY+WCMLHNFGGNIE+YG LDSI+SGPVDARVS+NSTMVGVGMCMEGIEQ
Sbjct:   421 WNKSAQFYGTPYIWCMLHNFGGNIEMYGALDSISSGPVDARVSKNSTMVGVGMCMEGIEQ 480

Query:   480 NPVVYELMSEMAFRNEKVQVLEWLKTYAHRRYGKAVPEVEATWEILYHTVYNCTDGIADH 539
             NPVVYEL SEMAFR+EKV V +WLK+YA RRY K   ++EA WEILYHTVYNCTDGIADH
Sbjct:   481 NPVVYELTSEMAFRDEKVDVQKWLKSYARRRYMKENHQIEAAWEILYHTVYNCTDGIADH 540

Query:   540 NTDFIVKFPDWDPSLLSGSAISKRDQ-MHALHALPGPRRFL-SEENSDMPQAHLWYSNQE 597
             NTDFIVK PDWDPS      + ++D  M +       RR L  ++ +D+P+AHLWYS +E
Sbjct:   541 NTDFIVKLPDWDPSSSVQDDLKQKDSYMISTGPYETKRRVLFQDKTADLPKAHLWYSTKE 600

Query:   598 LIKGLKLFLNAGNALAGCATYRYDLVDITRQALSKLANQVYMDAVIAFQHKDASAFNIHS 657
             +I+ LKLFL AG+ L+   TYRYD+VD+TRQ LSKLANQVY +AV AF  KD  +    S
Sbjct:   601 VIQALKLFLEAGDDLSRSLTYRYDMVDLTRQVLSKLANQVYTEAVTAFVKKDIGSLGQLS 660

Query:   658 QKFLQLIKDIDELLASNDNFLLGTWLESAKKLATNPSEMIQYEYNARTQVTMWYDTNITT 717
             +KFL+LIKD+D LLAS+DN LLGTWLESAKKLA N  E  QYE+NARTQVTMWYD+N   
Sbjct:   661 EKFLELIKDMDVLLASDDNCLLGTWLESAKKLAKNGDERKQYEWNARTQVTMWYDSNDVN 720

Query:   718 QSKLHDYANKFWSGLLVDYYLPRASTYFDYMSKSLREKSEFQVDRWRQQWVFISISWQSN 777
             QSKLHDYANKFWSGLL DYYLPRA  YF+ M KSLR+K  F+V++WR++W+ +S  WQ  
Sbjct:   721 QSKLHDYANKFWSGLLEDYYLPRARLYFNEMLKSLRDKKIFKVEKWRREWIMMSHKWQ-- 778

Query:   778 WKTGTKNYPIRAKGDSIAIAKVLYDKYF 805
              ++ ++ YP++AKGD++AI++ L  KYF
Sbjct:   779 -QSSSEVYPVKAKGDALAISRHLLSKYF 805

GO:0004561 "alpha-N-acetylglucosaminidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

RGD\|1564228 Naglu "N-acetylglucosaminidase, alpha" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S1D7 NAGLU "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|P54802 NAGLU "Alpha-N-acetylglucosaminidase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|A6QM01 NAGLU "NAGLU protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|H9L296 H9L296 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0291998 naglu "alpha-N-acetylglucosaminidase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

FB\|FBgn0014417 CG13397 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P54802	ANAG_HUMAN	3, ., 2, ., 1, ., 5, 0	0.4024	0.8273	0.9030	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.2.1	LOW CONFIDENCE prediction!
3rd Layer	3.2.1.50	0.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.IX.3381.1	hypothetical protein (793 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XIV.2399.1	hypothetical protein (454 aa)	•	•	•	0.919
	gw1.XIII.847.1	hypothetical protein (437 aa)			•	0.899
	gw1.28.778.1	hypothetical protein (434 aa)			•	0.899
	gw1.133.86.1	hypothetical protein (437 aa)			•	0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		811
pfam05089		333	pfam05089, NAGLU, Alpha-N-acetylglucosaminidase (N	0.0
pfam12972		269	pfam12972, NAGLU_C, Alpha-N-acetylglucosaminidase	1e-102
pfam12971		85	pfam12971, NAGLU_N, Alpha-N-acetylglucosaminidase	1e-22

>gnl\|CDD\|218423 pfam05089, NAGLU, Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain	Back alignment and domain information

 Score =  542 bits (1400), Expect = 0.0
 Identities = 189/340 (55%), Positives = 248/340 (72%), Gaps = 8/340 (2%)

Query: 157 YYQNVVTSSYSYVWWEWERWEKEIDWMALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLN 216
           YY N  T SY++ WW+WERWE+EIDWMAL GINLPLA  GQEA+W +V +   ++ E++ 
Sbjct: 2   YYLNYCTFSYTFAWWDWERWEREIDWMALNGINLPLAITGQEAVWYRVLLELGLSDEEIR 61

Query: 217 DFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQKKIVSRMLELGMTPVLPSFAGNVP 276
           +FF+GPAFLAW RMGNL GWGGPL Q+W+++QL LQKKI+ RM ELGMTPVLP+FAG+VP
Sbjct: 62  EFFTGPAFLAWWRMGNLEGWGGPLPQSWIDKQLALQKKILDRMRELGMTPVLPAFAGHVP 121

Query: 277 AALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTD 336
            ALK+ +P ANITR G W        +   Y LDPTDPLF +I   F+++Q   YG    
Sbjct: 122 RALKRKYPEANITRQGRWGG------FHRPYFLDPTDPLFAKIAARFLEEQKKLYG-TDH 174

Query: 337 IYNCDTFNENTPPTNDTNYISSLGAAVYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMK 396
           IY+ D FNE  PP+ D +Y+++ G A+YK+M + D DAVW++QGWLF  DS FW+   ++
Sbjct: 175 IYSADPFNEGGPPSGDPDYLAAAGQAIYKSMQKADPDAVWVLQGWLFV-DSDFWQANPIE 233

Query: 397 ALLHSVPLGKMIVLDLFAEVKPIWRTSSQFYGAPYVWCMLHNFGGNIEIYGILDSIASGP 456
           A L +VP G+++VLDLF+E  P W+ +  FYG P++WCMLHNFGGN  +YG LD +ASG 
Sbjct: 234 AFLSAVPKGRLLVLDLFSERYPQWKRTESFYGKPWIWCMLHNFGGNTGLYGNLDLVASGI 293

Query: 457 VDARVSENSTMVGVGMCMEGIEQNPVVYELMSEMAFRNEK 496
             AR +  S +VGVG+  EGIEQNPVVYEL+ E+A+R + 
Sbjct: 294 EAARANPGSNLVGVGITPEGIEQNPVVYELLLELAWREDP 333

Alpha-N-acetylglucosaminidase, a lysosomal enzyme required for the stepwise degradation of heparan sulfate. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterized by neurological dysfunction but relatively mild somatic manifestations. The structure shows that the enzyme is composed of three domains. This central domain has a tim barrel fold. Length = 333

>gnl\|CDD\|221877 pfam12972, NAGLU_C, Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain	Back alignment and domain information

>gnl\|CDD\|193444 pfam12971, NAGLU_N, Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		811
KOG2233		666	consensus Alpha-N-acetylglucosaminidase [Intracell	100.0
PF05089		333	NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-b	100.0
PF12972		267	NAGLU_C: Alpha-N-acetylglucosaminidase (NAGLU) C-t	100.0
PF12971		86	NAGLU_N: Alpha-N-acetylglucosaminidase (NAGLU) N-t	99.91
PF00150		281	Cellulase: Cellulase (glycosyl hydrolase family 5)	95.54
PF02449		374	Glyco_hydro_42: Beta-galactosidase; InterPro: IPR0	95.5

>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=2.7e-219  Score=1757.13  Aligned_cols=660  Identities=50%  Similarity=0.957  Sum_probs=639.3

Q ss_pred             CCCeEEEEeCCHHHHHHHHHHHHHHhccceeeeccCCCCccccCCCCCCCCCCCCCCeeeecCCcceeeccccccCcccc
Q 003545           90 NEPEITIKGTTAVEITSGLHWYIKYWCGAHVSWEKTGGFQIVSVPKPGSLPHVTDGGVKIQRPVPWNYYQNVVTSSYSYV  169 (811)
Q Consensus        90 ~~gkI~I~Gns~vala~Gln~YLk~~c~~~iSW~~~~g~~l~~~~lP~~LP~v~~~~v~~~t~~~~RY~lN~CT~sYT~a  169 (811)
                      .+++|.|+|+|||++|+|||||||+.|++||+|+   +.++.   +|.+||.|+.. +...+|  +|||+|+||+|||++
T Consensus         3 ~~~~il~~g~tGv~~~~~lh~ylk~~~~~~v~w~---k~~~s---lp~~lprv~~e-~~~~~p--~~YyqNvcT~SYSfa   73 (666)
T KOG2233|consen    3 DGGRILIKGTTGVEIASGLHWYLKYKCNAHVSWD---KQVAS---LPQHLPRVDSE-IFIARP--WNYYQNVCTFSYSFA   73 (666)
T ss_pred             CCceEEEecCchhhhhhcccHHHHHhhcCceeeh---heeee---CCCcCCCCCcc-eeeccc--hHhhcceeeeeeeee
Confidence            4679999999999999999999999999999999   88888   99999999987 666666  999999999999999


Q ss_pred             ccChhhhhhhHhHHhhcCCCccccccchHHHHHHHHHHcCCCHHHHhhhcCCchhhhHHhhccccCCCCCCCHHHHHHHH
Q 003545          170 WWEWERWEKEIDWMALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQL  249 (811)
Q Consensus       170 ~WdW~rWEreIDWMALnGvNlpLA~~GqEaVW~~v~~~lG~t~~ei~~ff~GPAflaW~rMGNl~gwGGPLp~~w~~~q~  249 (811)
                      ||+|+|||||||||||||||++||++|||+||++||+.||++.|||++||+|||||||+|||||++||||||++|+..|.
T Consensus        74 WW~w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql  153 (666)
T KOG2233|consen   74 WWGWEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQL  153 (666)
T ss_pred             eechHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeecccCCCCCCchhHHhhCCCCceecCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHHHH
Q 003545          250 VLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQIL  329 (811)
Q Consensus       250 ~LQkkIl~RMReLGM~PVLPgF~G~VP~~~~~~~P~A~i~~~~~W~gF~~~p~y~~~~~LdP~DplF~~I~~~F~~eq~~  329 (811)
                      .|||||++|||+|||+||||+|+||||++++++||++++++++.|+.|++.  |||.++|.|+||||.+||.+|+++|+|
T Consensus       154 ~LqkrIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~--~~C~l~v~P~dplF~eIgs~Flr~~~k  231 (666)
T KOG2233|consen  154 LLQKRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSR--YSCMLLVSPFDPLFQEIGSTFLRHQIK  231 (666)
T ss_pred             HHHHHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcc--eeeeEEccCCcchHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999975  999999999999999999999999999


Q ss_pred             HhCCCCcccccCCCCCCCCCCCCchHHHHHHHHHHHHHHccCCCceEEEecccCCCCCCCCCchhHHHhhcCCCCCCEEE
Q 003545          330 EYGDVTDIYNCDTFNENTPPTNDTNYISSLGAAVYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPLGKMIV  409 (811)
Q Consensus       330 ~fG~~~h~Y~~D~FnE~~pp~~d~~~L~~~~~~iy~am~~~dP~AvWvmQgW~F~~~~~fW~~~~~~AlL~~Vp~~~mlv  409 (811)
                      +||.++|+|+||||||+.||+++|+|+++.+.|||+||+++||+||||||||+|.+|+ ||+++++||||++||.|||||
T Consensus       232 efG~~tniy~~DpFNE~~Pp~sepey~~staaAiyesm~kvdknaVWllQgWlF~~d~-FW~~~~ikafL~avP~GrllV  310 (666)
T KOG2233|consen  232 EFGGVTNIYSADPFNEILPPESEPEYVKSTAAAIYESMKKVDKNAVWLLQGWLFTYDP-FWPPWQIKAFLSAVPRGRLLV  310 (666)
T ss_pred             HhCCcccccccCcccccCCCCCChHHHHHHHHHHHHHHhccCcceEEeeecceeecCC-CCChHHHHHHHhcCCcCcEEE
Confidence            9997799999999999999999999999999999999999999999999999999999 999999999999999999999


Q ss_pred             EEcCCCcccccccccCCCCCCceeeeccCCCCccccccchhhhhcChhHhhhcCCCceEEEeeCccccccChhHHHHHHh
Q 003545          410 LDLFAEVKPIWRTSSQFYGAPYVWCMLHNFGGNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQNPVVYELMSE  489 (811)
Q Consensus       410 LDL~aE~~p~W~~~~~f~G~pwIWc~LhNFGG~~gm~G~l~~i~~~~~~A~~~~~s~mvGiG~tpEGie~NpvvYeL~~d  489 (811)
                      |||+||..|+|++|.+|+|||||||||||||||.+|+|.++.|++||.+|+..+||+|||+||+||||+||||||+||.|
T Consensus       311 LDLyaEv~P~~~~Tasf~GqpfIWCmLHNFGGn~~lfGal~~InsG~e~Ar~~~nStlVGtGm~~EgI~QN~VvYsf~~e  390 (666)
T KOG2233|consen  311 LDLYAEVVPAWQMTASFQGQPFIWCMLHNFGGNRELFGALQKINSGPELARMKPNSTLVGTGMSMEGIDQNYVVYSFMIE  390 (666)
T ss_pred             EehhhhhhhHHHhhhhhcCCceeEEEeeccCCcHhhhhhHHHhccCHHHHhcCCCCceeecccCccccccchhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCCHHHHHHHHHhcccCCCChhHHHHHHHHHhcccCCCCCCCCCCC-CcccccccCCCCcccCcccchhhhhhh
Q 003545          490 MAFRNEKVQVLEWLKTYAHRRYGKAVPEVEATWEILYHTVYNCTDGIADHNT-DFIVKFPDWDPSLLSGSAISKRDQMHA  568 (811)
Q Consensus       490 ~aW~~~~idl~~Wl~~Ya~rRYG~~~~~~~~AW~iL~~TvY~~~~~~~~~~~-~~~~s~~~~rPsl~~~~~~~~~~~~~~  568 (811)
                      ++|+++++||+.|+++|++||||+.++.+++||.+|.+|||||+++...++. ..+.    -||++.             
T Consensus       391 ~~wsde~ldl~~Wlksys~sRY~~~~~~~eaaW~lL~~tvYn~~~~~~~~~~~~~l~----rRp~f~-------------  453 (666)
T KOG2233|consen  391 RGWSDEPLDLNNWLKSYSESRYGVDFKVAEAAWTLLAGTVYNCPGKWATRGFSYFLY----RRPSFQ-------------  453 (666)
T ss_pred             hccCCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHhhhhcCCCcccccCCCceeeE----eccccc-------------
Confidence            9999999999999999999999999999999999999999999997777763 3333    377741             


Q ss_pred             cccCCCCcccccccCCCCCCCcccCCHHHHHHHHHHHHHhhhccCCC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003545          569 LHALPGPRRFLSEENSDMPQAHLWYSNQELIKGLKLFLNAGNALAGC-ATYRYDLVDITRQALSKLANQVYMDAVIAFQH  647 (811)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~Yd~~~l~~A~~lll~a~~~l~~s-~~yryDLVDvtRQ~L~n~a~~~~~~~~~Ay~~  647 (811)
                                        ..+.+||+.+++.+||++||.+.+.+..+ ++|||||||+|||+|+..++++|.++..||..
T Consensus       454 ------------------~k~~~Wyn~sev~~a~rllL~a~~~l~~e~~~fr~DlvDltRq~lqelanq~y~e~~sAflk  515 (666)
T KOG2233|consen  454 ------------------RKTEYWYNVSEVFSAWRLLLTALVHLLGEHPLFRYDLVDLTRQMLQELANQAYLEARSAFLK  515 (666)
T ss_pred             ------------------CCceeeecHHHHHHHHHHHHhhhhhhccCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              25679999999999999999999887666 99999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhCCCHHHHHHHHHHhhhceeccCCCCCCCCCCcccccch
Q 003545          648 KDASAFNIHSQKFLQLIKDIDELLASNDNFLLGTWLESAKKLATNPSEMIQYEYNARTQVTMWYDTNITTQSKLHDYANK  727 (811)
Q Consensus       648 kd~~~f~~~~~~~l~li~dlD~LL~t~~~flLg~Wl~~Ar~~g~~~~ek~~yE~NAR~qIT~WG~~~~~~~g~L~DYAnK  727 (811)
                      ||...+.+.|.++++|++|||.+|+++.+||||+||++||+.|.+.+|++.||.|||+|||+|||+     |+|+|||||
T Consensus       516 kd~~sl~~~~~~llelf~dle~~lasd~nfLlg~WleqAk~~A~n~~er~~fe~nar~qlT~Wgp~-----gqilDYA~k  590 (666)
T KOG2233|consen  516 KDKQSLGALSEKLLELFQDLESYLASDDNFLLGQWLEQAKSAAPNSEERQVFEVNARDQLTVWGPT-----GQILDYANK  590 (666)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHhhCCChhhhhhccccccceEEEECCC-----cchhhHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999997     899999999


Q ss_pred             hcchhhhhccHHHHHHHHHHHHHHhhcCCcccHHHHHHHHH-HHhhhcccccccCCCCCCCCCCCCHHHHHHHHHHHhh
Q 003545          728 FWSGLLVDYYLPRASTYFDYMSKSLREKSEFQVDRWRQQWV-FISISWQSNWKTGTKNYPIRAKGDSIAIAKVLYDKYF  805 (811)
Q Consensus       728 ~WaGL~~dyY~pRW~~f~~~l~~~l~~~~~~~~~~~~~~~~-~~E~~W~~~w~~~~~~y~~~p~gd~~~~a~~l~~ky~  805 (811)
                      |||||++|||.|||+.|++.+.++++.|+||+.++|..+++ .+|.+++    .++..||.+|.||+++|++.|+.||+
T Consensus       591 qwaGLvsdYY~pRwrlf~e~il~slhd~~pFn~t~f~~~v~~~~e~~fs----~s~~vYPv~p~Gdt~~is~~if~ky~  665 (666)
T KOG2233|consen  591 QWAGLVSDYYGPRWRLFLEWILESLHDGKPFNHTEFSISVFRDVERPFS----ISNIVYPVKPKGDTLAISRHIFSKYF  665 (666)
T ss_pred             HHHHhhhhcccHHHHHHHHHHHHHHhcCCCccccchhhHHHHhhhcccc----ccccccccCCCccHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999996 9999999    99999999999999999999999996

>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []	Back alignment and domain information

>PF12972 NAGLU_C: Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain; InterPro: IPR024732 Alpha-N-acetylglucosaminidase is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []	Back alignment and domain information

>PF12971 NAGLU_N: Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain; InterPro: IPR024240 Alpha-N-acetylglucosaminidase, is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []	Back alignment and domain information

>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3	Back alignment and domain information

>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		811
2vc9_A		891	Family 89 Glycoside Hydrolase From Clostridium Perf		1e-88
4a4a_A		914	Cpgh89 (E483q, E601q), From Clostridium Perfringens		9e-88

>pdb|2VC9|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens In Complex With 2-Acetamido-1,2-Dideoxynojirmycin Length = 891

Back alignment and structure

Iteration: 1

Score = 324 bits (830), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 218/774 (28%), Positives = 359/774 (46%), Gaps = 62/774 (8%) Query: 35 DSKRVNSSVQESAAKAVLQRLLPTHVNSFQFKIVSKDVCGGSSCFLIDNYKRTSQNEPEI 94 DS N V + + + F F+I +D G+ F + + + ++ Sbjct: 162 DSAYANEKTLNEIKNLVGRVIGREFKDKFIFEI--RDQLNGNDVFEV-----SDSGDGKV 214 Query: 95 TIKGTTAVEITSGLHWYIKYWCGAHVSWEKTGGFQIVSVPKPGSLPHVTDGGVKIQRPVP 154 IKG V + SG ++Y+K +C +VS+ G ++ P ++P V + V I P Sbjct: 215 LIKGNNGVSLASGFNYYLKNYC--NVSYNPIMG---SNLKMPETMPSVGER-VVIDTPYE 268 Query: 155 WNYYQNVVTSSYSYVWWEWERWEKEIDWMALQGINLPLAFNGQEAIWQKVFMNFNVTMED 214 Y N T SY+ +W+W+++E+ +DW A+ G+NL L GQE + ++ F + E+ Sbjct: 269 HRYALNFCTYSYTMSFWDWDQYEEFLDWCAMNGVNLVLDIIGQEEVLRRTLNEFGYSDEE 328 Query: 215 LNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQKKIVSRMLELGMTPVLPSFAGN 274 + +F SGPA+ AW M N+ G+GGPL +W Q+ L +K+ RM G+ PVL ++G Sbjct: 329 VKEFISGPAYFAWFYMQNMTGFGGPLPNDWFEQRAELGRKMHDRMQSFGINPVLQGYSGM 388 Query: 275 VPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGDV 334 VP K+ A G W DR P TY+ + F ++ + F ++Q +GDV Sbjct: 389 VPRDFKEKNQEAQTISQGGWCGFDR-PDMLKTYVNEGEADYFQKVADVFYEKQKEVFGDV 447 Query: 335 TDIYNCDTFNENTPPTNDTNYISSLGAAVYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQ 394 T+ Y D F+E + N + + M E D DAVW++Q W P Sbjct: 448 TNFYGVDPFHEGGNTGDLDN--GKIYEIIQNKMIEHDNDAVWVIQNWQ--------GNPS 497 Query: 395 MKALLHSVPLGKMIVLDLFAEVKPIWRTSSQFYGAPYVWCMLHNFGGNIEIYGILDSIAS 454 L + +VLDLF+EV P W + P++W MLHNFGG + + + +A+ Sbjct: 498 NNKLEGLTKKDQAMVLDLFSEVSPDWNRLEE-RDLPWIWNMLHNFGGRMGMDAAPEKLAT 556 Query: 455 GPVDARVSENSTMVGVGMCMEGIEQNPVVYELMSEMAFRNEKVQVLEWLKTYAHRRYGKA 514 + ++ + MVG+G+ E I NP+ YEL+ +MA+ +++ W + Y RRYGK Sbjct: 557 -EIPKALANSEHMVGIGITPEAINTNPLAYELLFDMAWTRDQINFRTWTEDYIERRYGKT 615 Query: 515 VPEVEATWEILYHTVYNCTDGIADHNTDFIVKFPDWDPSLLSGSAISKRDQMHALHALPG 574 E+ W I+ T Y + G+A S ++A PG Sbjct: 616 NKEILEAWNIILDTAYKKRN------------------DYYQGAAES------IINARPG 651 Query: 575 PRRFLSEENSDMPQAHLWYSNQELIKGLKLFLNAGNALAGCATYRYDLVDITRQALSKLA 634 F + S + + Y E K +++F + + YD DI +Q L+ A Sbjct: 652 ---FGIKSASTWGHSKIVYDKSEFEKAIEIFAKNYDEFKDSDAFLYDFADILKQLLANSA 708 Query: 635 NQVYMDAVIAFQHKDASAFNIHSQKFLQLIKDIDELLASNDNFLLGTWLESAKKLATNPS 694 + Y A+ + + F S KFL+LIK + +L++ FL+G W+E A+ + + Sbjct: 709 QEYYEVMCNAYNNGNGEKFKFVSGKFLELIKLQERVLSTRPEFLIGNWIEDARTMLKDSD 768 Query: 695 EMIQ--YEYNARTQVTMWYDTNITTQSKLHDYANKFWSGLLVDYYLPRASTYFDYMSKSL 752 + + +E+NAR VT W N L DY+N+ WSGL DYY R + + + L Sbjct: 769 DWTKDLFEFNARALVTTWGSRNNADGGGLKDYSNRQWSGLTEDYYYARWEKWINGLQAEL 828 Query: 753 REKSEF-QVDRWRQQWVFISISWQSNWKTGTKNYPIRAKGDSIA-IAKVLYDKY 804 ++ +D W + W + K YP A +++ +AK+ + Y Sbjct: 829 DGGAKAPNID-----WFKMEYDWVNKKSDTDKLYPTEASNENLGELAKIAMESY 877

PyMOL of 2vc9

>pdb|4A4A|A Chain A, Cpgh89 (E483q, E601q), From Clostridium Perfringens, In Complex With Its Substrate Glcnac-Alpha-1,4-Galactose Length = 914

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		811
4a4a_A		914	Alpha-N-acetylglucosaminidase family protein; hydr	0.0
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A Length = 914	Back alignment and structure

 Score =  802 bits (2072), Expect = 0.0
 Identities = 203/744 (27%), Positives = 335/744 (45%), Gaps = 58/744 (7%)

Query: 64  QFKIVSKDVCGGSSCFLIDNYKRTSQNEPEITIKGTTAVEITSGLHWYIKYWCGAHVSWE 123
           +F    +D   G+  F + +       + ++ IKG   V + SG ++Y+K +C    +  
Sbjct: 212 KFIFEIRDQLNGNDVFEVSDS-----GDGKVLIKGNNGVSLASGFNYYLKNYCNVSYNP- 265

Query: 124 KTGGFQIVSVPKPGSLPHVTDGGVKIQRPVPWNYYQNVVTSSYSYVWWEWERWEKEIDWM 183
              G  +     P ++P V    V I  P    Y  N  T SY+  +W+W+++E+ +DW 
Sbjct: 266 -IMGSNL---KMPETMPSV-GERVVIDTPYEHRYALNFCTYSYTMSFWDWDQYEEFLDWC 320

Query: 184 ALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQN 243
           A+ G+NL L   GQE + ++    F  + E++ +F SGPA+ AW  M N+ G+GGPL  +
Sbjct: 321 AMNGVNLVLDIIGQEEVLRRTLNEFGYSDEEVKEFISGPAYFAWFYMQNMTGFGGPLPND 380

Query: 244 WLNQQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRW 303
           W  Q+  L +K+  RM   G+ PVL  ++G VP   K+    A     G W   DR P  
Sbjct: 381 WFEQRAELGRKMHDRMQSFGINPVLQGYSGMVPRDFKEKNQEAQTISQGGWCGFDR-PDM 439

Query: 304 CCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDTFNENTPPTNDTNYISSLGAAV 363
             TY+ +     F ++ + F ++Q   +GDVT+ Y  D F++     +       +   +
Sbjct: 440 LKTYVNEGEADYFQKVADVFYEKQKEVFGDVTNFYGVDPFHQGGNTGDL--DNGKIYEII 497

Query: 364 YKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPLGKMIVLDLFAEVKPIWRTS 423
              M E D DAVW++Q W           P    L       + +VLDLF+EV P W   
Sbjct: 498 QNKMIEHDNDAVWVIQNW--------QGNPSNNKLEGLTKKDQAMVLDLFSEVSPDWNR- 548

Query: 424 SQFYGAPYVWCMLHNFGGNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQNPVV 483
            +    P++W MLHNFGG + +    + +A+    A  + +  MVG+G+  + I  NP+ 
Sbjct: 549 LEERDLPWIWNMLHNFGGRMGMDAAPEKLATEIPKAL-ANSEHMVGIGITPQAINTNPLA 607

Query: 484 YELMSEMAFRNEKVQVLEWLKTYAHRRYGKAVPEVEATWEILYHTVYNCTDGIADHNTDF 543
           YEL+ +MA+  +++    W + Y  RRYGK   E+   W I+  T Y   +       + 
Sbjct: 608 YELLFDMAWTRDQINFRTWTEDYIERRYGKTNKEILEAWNIILDTAYKKRNDYYQGAAES 667

Query: 544 IVKFPDWDPSLLSGSAISKRDQMHALHALPGPRRFLSEENSDMPQAHLWYSNQELIKGLK 603
           I+   +  P     SA                        S    + + Y   E  K ++
Sbjct: 668 II---NARPGFGIKSA------------------------STWGHSKIVYDKSEFEKAIE 700

Query: 604 LFLNAGNALAGCATYRYDLVDITRQALSKLANQVYMDAVIAFQHKDASAFNIHSQKFLQL 663
           +F    +       + YD  DI +Q L+  A + Y     A+ + +   F   S KFL+L
Sbjct: 701 IFAKNYDEFKDSDAFLYDFADILKQLLANSAQEYYEVMCNAYNNGNGEKFKFVSGKFLEL 760

Query: 664 IKDIDELLASNDNFLLGTWLESAKKLATNPSEMIQ--YEYNARTQVTMWYDTNITTQSKL 721
           IK  + +L++   FL+G W+E A+ +  +  +  +  +E+NAR  VT W   N      L
Sbjct: 761 IKLQERVLSTRPEFLIGNWIEDARTMLKDSDDWTKDLFEFNARALVTTWGSRNNADGGGL 820

Query: 722 HDYANKFWSGLLVDYYLPRASTYFDYMSKSLREKSEFQVDRWRQQWVFISISWQSNWKTG 781
            DY+N+ WSGL  DYY  R   + + +   L   ++     W +        W +     
Sbjct: 821 KDYSNRQWSGLTEDYYYARWEKWINGLQAELDGGAKAPNIDWFKME----YDWVNKKSDT 876

Query: 782 TKNYPIRAKGDSIAIA-KVLYDKY 804
            K YP  A  +++    K+  + Y
Sbjct: 877 DKLYPTEASNENLGELAKIAMESY 900

PyMOL of 4a4a

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		811
d1kwga2		393	A4 beta-galactosidase {Thermus thermophilus [TaxId	97.17
d1ceoa_		340	Endoglucanase CelC {Clostridium thermocellum [TaxI	95.71
d1qnra_		344	Beta-mannanase {Trichoderma reesei [TaxId: 51453]}	95.52
d2pb1a1		394	Exo-beta-(1,3)-glucanase {Yeast (Candida albicans)	94.93

>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: A4 beta-galactosidase
species: Thermus thermophilus [TaxId: 274]

Probab=97.17  E-value=0.0089  Score=35.61  Aligned_cols=142  Identities=17%  Similarity=0.195  Sum_probs=102.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             42335582556666868751288831001014999999999729997877411377022468731356678998988799
Q 003545          166 YSYVWWEWERWEKEIDWMALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWL  245 (811)
Q Consensus       166 YT~a~WdW~rWEreIDWMALnGVNlpLA~~GqEaVW~~v~~~lG~t~~ei~~ff~GPAflaW~rMGNl~gwGGPLp~~w~  245 (811)
                      |.=.+||=++||+.|+.|+-.|+|..=-.+.   -|.++.                          --.|   ..-    
T Consensus         6 ~~p~~~~~~~~~~D~~~~~~~G~n~vR~~i~---~W~~ie--------------------------p~~G---~~~----   49 (393)
T d1kwga2           6 YYPEHWPKERWKEDARRMREAGLSHVRIGEF---AWALLE--------------------------PEPG---RLE----   49 (393)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHTCCEEEECTT---CHHHHC--------------------------SBTT---BCC----
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEEECCC---CHHHCC--------------------------CCCC---CCC----
T ss_conf             5845499999999999999829998995553---465318--------------------------8899---268----


Q ss_pred             HHHHHHHHHHHHHHHHCCCEECCCCCCCCCCHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             99999999999999970994265688777723577439999210389978767999764333358999069999999999
Q 003545          246 NQQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIK  325 (811)
Q Consensus       246 ~~q~~LQkkIl~RMreLGM~PVLPgF~G~VP~~l~~~~P~A~i~~~~~W~gF~~~p~~~~~~~LdP~DplF~~I~~~F~~  325 (811)
                         .+-..++++.+++.||+||+--|....|.-+...+|......   ..|....  +....+.+..+|.+.+..+.|++
T Consensus        50 ---~~~~d~~i~~~~~~Gi~~iv~l~~~~~P~w~~~~~~~~~~~~---~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~  121 (393)
T d1kwga2          50 ---WGWLDEAIATLAAEGLKVVLGTPTATPPKWLVDRYPEILPVD---REGRRRR--FGGRRHYCFSSPVYREEARRIVT  121 (393)
T ss_dssp             ---CHHHHHHHHHHHTTTCEEEEECSTTSCCHHHHHHCGGGSCBC---TTSCBCC--SSSSCCCCTTCHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCCCCCCCCC---CCCCCCC--CCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             ---799999999999879999997677777534321486501245---7785046--66666667799999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99997189896444678988999999
Q 003545          326 QQILEYGDVTDIYNCDTFNENTPPTN  351 (811)
Q Consensus       326 eq~~~yG~~~h~Y~~DpFnE~~pp~~  351 (811)
                      ...+.|+.-..+...+..||..-...
T Consensus       122 ~~~~~~~~~~~~~~~~~~ne~~~~~~  147 (393)
T d1kwga2         122 LLAERYGGLEAVAGFQTDNEYGCHDT  147 (393)
T ss_dssp             HHHHHHTTCTTEEEEECSSSTTTTTT
T ss_pred             HHHHHHCCCCEEEEEEECCCCCCCCC
T ss_conf             99877168853788740355565577

PyMOL of d1kwga2

>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]}	Back information, alignment and structure

>d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId: 51453]}	Back information, alignment and structure

>d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]}	Back information, alignment and structure