Citrus Sinensis ID: 003550
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 811 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SZ11 | 759 | Probable glycerophosphory | yes | no | 0.924 | 0.988 | 0.599 | 0.0 | |
| Q9FJ62 | 766 | Probable glycerophosphory | no | no | 0.934 | 0.989 | 0.595 | 0.0 | |
| Q7Y208 | 763 | Probable glycerophosphory | no | no | 0.898 | 0.955 | 0.584 | 0.0 | |
| P96236 | 274 | Probable glycerophosphory | yes | no | 0.078 | 0.233 | 0.409 | 0.0003 |
| >sp|Q9SZ11|GLPQ2_ARATH Probable glycerophosphoryl diester phosphodiesterase 2 OS=Arabidopsis thaliana GN=GPDL2 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 954 bits (2465), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/764 (59%), Positives = 584/764 (76%), Gaps = 14/764 (1%)
Query: 55 GLLLVSALVVLHCGVI------AQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSS 108
GLL S+L L CGVI AQ+ AQ S W TLTGDPP V+ARGGFSG+FPDSS
Sbjct: 3 GLLRASSL--LLCGVILIQLLAAQIHAQSKKPKSPWPTLTGDPPLVIARGGFSGLFPDSS 60
Query: 109 SIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVP 168
AY+ ++TS P +LWCDVQLTKD GICFPDL + N+S+I ++ T+QK+Y VNGVP
Sbjct: 61 YDAYNFAILTSVPDAVLWCDVQLTKDALGICFPDLTMRNSSSIEAVYPTRQKSYPVNGVP 120
Query: 169 TPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDA 228
T GWF+ID++L DL ++ L +G+ SR++KFDGN I+TVQ ++ Q+KP WLN+QHDA
Sbjct: 121 TSGWFTIDFSLKDLKDVNLIRGILSRSEKFDGNSNPIMTVQSVSTQMKPSFFWLNVQHDA 180
Query: 229 FYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPT 288
FYAQHNLSM SF+++ S++V++++ISSPEVNF + IA RF + LVFRFLG+ E EPT
Sbjct: 181 FYAQHNLSMSSFLVAASKTVLIDFISSPEVNFFKKIAGRFGRNGPSLVFRFLGQDEFEPT 240
Query: 289 TNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNF 348
TN+TYGS+L NLTF+KTFASGILVPK YI P+D+ YLLPHT++V DAHK LEVF S F
Sbjct: 241 TNRTYGSILSNLTFVKTFASGILVPKSYILPLDDQQYLLPHTSLVQDAHKAGLEVFVSGF 300
Query: 349 ANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANL 408
ANDI I+ +YS+DP++EYLSF+DNG+FSVDGVLSDFP+T SA++DCF+H+G+NA+K +
Sbjct: 301 ANDIDIAHDYSFDPVSEYLSFVDNGNFSVDGVLSDFPITASASLDCFSHVGRNATKQVDF 360
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
LVI+K+GASGDYP CT+LAY+KAI DG D IDC VQ+S DG PFCLS I+L NST + +
Sbjct: 361 LVITKDGASGDYPGCTDLAYKKAIKDGADVIDCSVQLSSDGTPFCLSSIDLGNSTTVSLT 420
Query: 469 KFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLS 528
F + +TT+PE+ + I++FSL W EIQTL P ISNPY LFRNPK KNAGK LS
Sbjct: 421 AFRNRSTTVPELGSLGAIYTFSLTWAEIQTLTPAISNPYRVTSLFRNPKQKNAGKLFSLS 480
Query: 529 DFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD 588
DFL +AKN+ SLSGVLIS+ENA YL E+QG+ V +V++ L GY+ TA KVMIQST+
Sbjct: 481 DFLSLAKNSTSLSGVLISVENAAYLREEQGLDVVKAVLDTLTQTGYSNSTATKVMIQSTN 540
Query: 589 SSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648
SSVL+ ++++ YE VYKV+ENIRD L+ IEDIKKFAD+VV+ K SV+P+ +FIT+ T
Sbjct: 541 SSVLVDFKKQSQYETVYKVEENIRDILDSAIEDIKKFADAVVIQKLSVFPVAQSFITTQT 600
Query: 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARY 708
++V++LQ +LPVYVE F NEF+SQ +DFF+D TVEIN+Y GAGI+G ITEFP TAARY
Sbjct: 601 NVVEKLQKSQLPVYVELFQNEFLSQPYDFFADATVEINSYITGAGINGTITEFPFTAARY 660
Query: 709 RRNRCLKRGDKTPPYMNPVQPGGLLPLITSDYLPPAEAPNPILTEAAVTEPPLPPVTP-V 767
+RN CL R +T PYM P QPG LL L++ PPAEAPNP+ T+A VTEPPLPPVT
Sbjct: 661 KRNLCLGR-KETIPYMAPAQPGALLTLVSPTAFPPAEAPNPVFTDADVTEPPLPPVTAKA 719
Query: 768 PSTSPSDGSDGSAAPATPPNGQPKVATGIFLSTMAMLLITLLLL 811
P++SP S + AP+ GQ ++ + LS AM+L +LLLL
Sbjct: 720 PTSSPGTPSTNAQAPS----GQTRITLSLLLSVFAMVLASLLLL 759
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Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: 4EC: 6 |
| >sp|Q9FJ62|GLPQ1_ARATH Probable glycerophosphoryl diester phosphodiesterase 1 OS=Arabidopsis thaliana GN=GPDL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 948 bits (2451), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/772 (59%), Positives = 579/772 (75%), Gaps = 14/772 (1%)
Query: 48 MCNTR---ALGLLLVSALVVLHCGVIAQVSAQ--GSNATSRWQTLTGDPPFVVARGGFSG 102
M N R + +L S + L +I +S Q + S WQTLTGD P V+ARGGFSG
Sbjct: 1 MINMRDNPTMHVLQASKFLFLALILIQLLSTQLFAQRSKSPWQTLTGDAPLVIARGGFSG 60
Query: 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNY 162
+ PDSS AYS TS P +LWCDVQLTKD G+CFPD+K+ NASNI ++ ++ +Y
Sbjct: 61 LLPDSSLDAYSFVSQTSVPGAVLWCDVQLTKDAIGLCFPDVKMMNASNIQDVYPKRKTSY 120
Query: 163 LVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWL 222
L+NGVPT WF+ID+ DL+ +IL QG+ SR+ FDGN + I TV+D++ Q+KP G WL
Sbjct: 121 LLNGVPTQDWFTIDFNFKDLTKVILKQGILSRSAAFDGNSYGISTVKDISTQLKPEGFWL 180
Query: 223 NIQHDAFYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGK 282
N+QHDAFYAQHNLSM SF+LS+S++V+++Y+SSPEVNF R+I RF + K VFRFL K
Sbjct: 181 NVQHDAFYAQHNLSMSSFLLSISKTVIIDYLSSPEVNFFRNIGRRFGRNGPKFVFRFLEK 240
Query: 283 SEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLE 342
++E +TNQTYGSL NLTF+KTFASG+LVPK YIWP+ ES YLLP T+ V DAHK LE
Sbjct: 241 DDVEVSTNQTYGSLAGNLTFLKTFASGVLVPKSYIWPI-ESQYLLPRTSFVQDAHKAGLE 299
Query: 343 VFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNA 402
V+AS F ND +++NYS+DPL EYLSF+DNGDFSVDG+LSDFPLT S+AVDCF+HLG NA
Sbjct: 300 VYASGFGNDFDLAYNYSFDPLAEYLSFMDNGDFSVDGLLSDFPLTASSAVDCFSHLGSNA 359
Query: 403 SKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINS 462
S + LVISKNGASGDYP CT+LAY KAI DG D IDC +QMS DG+PFCLS INL S
Sbjct: 360 SSQVDFLVISKNGASGDYPGCTDLAYTKAIKDGADVIDCSLQMSSDGIPFCLSSINLGES 419
Query: 463 TNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFK-FKLFRNPKNKNA 521
TN QS F + +TT+PEI + GI+SFSL W EIQTL P I NPY + F +FRNP+ +++
Sbjct: 420 TNVVQSPFRNRSTTVPEIGSLPGIYSFSLAWSEIQTLRPAIENPYSREFTMFRNPRERSS 479
Query: 522 GKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGY-NKQTAL 580
GKF+ LSDFL +AKN++SL+GVLIS+ENA YL EKQG+ +V++ L AGY NK T
Sbjct: 480 GKFVSLSDFLNLAKNSSSLTGVLISVENATYLREKQGLDAVKAVLDTLTEAGYSNKTTTT 539
Query: 581 KVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLN 640
+VMIQST+SSVL+ ++++ YE VYKV+E IRD L+ IEDIKKFAD+VV+SK+SV+P +
Sbjct: 540 RVMIQSTNSSVLIDFKKQSRYETVYKVEETIRDILDTAIEDIKKFADAVVISKKSVFPTS 599
Query: 641 SAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITE 700
+F T T +V+RLQ F+LPVYVE F NEFVSQ WDFF+D TVEIN++ GAGI+G ITE
Sbjct: 600 ESFTTGQTKLVERLQKFQLPVYVEVFRNEFVSQPWDFFADATVEINSHVTGAGINGTITE 659
Query: 701 FPMTAARYRRNRCLKRGDKTPPYMNPVQPGGLLPLITSDYLPPAEAPNPILTEAAVTEPP 760
FP+TAARY+RN CL R D PPYM PVQP GLL +++ LPPAEAP+P+ T+A VTEPP
Sbjct: 660 FPLTAARYKRNSCLTRKD-VPPYMIPVQPAGLLTIVSPASLPPAEAPSPVFTDADVTEPP 718
Query: 761 LPPVTP-VPSTSPSDGSDGSAAPATPPNGQPKVATGIFLSTMAMLLITLLLL 811
LPPV+ P+T+P S G + PNGQ +VA + LS A + +LLLL
Sbjct: 719 LPPVSARAPTTTPGPQSTGEKS----PNGQTRVALSLLLSAFATVFASLLLL 766
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Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 EC: 6 |
| >sp|Q7Y208|GLPQ3_ARATH Probable glycerophosphoryl diester phosphodiesterase 3 OS=Arabidopsis thaliana GN=GPDL3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 900 bits (2326), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/744 (58%), Positives = 564/744 (75%), Gaps = 15/744 (2%)
Query: 57 LLVSALVVLHCGVI------AQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSSI 110
L++ + +L CGV+ AQ+ AQ S TSRWQTL GD P V+ARGGFSG++PDSS
Sbjct: 11 LVIRSSTLLFCGVVLIHLFAAQIDAQRS--TSRWQTLNGDAPLVIARGGFSGLYPDSSIA 68
Query: 111 AYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170
AY L +TS V+LWCD+QLTKD GICFPDL L NAS I +++ ++K+Y VNGV T
Sbjct: 69 AYQLATLTSVADVVLWCDLQLTKDGLGICFPDLNLANASTIDRVYPNREKSYSVNGVTTK 128
Query: 171 GWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFY 230
GWF D++L +L N +L +G+ SRTD+FDGNG+ I T++D+ + G WLN+QHDAFY
Sbjct: 129 GWFPNDFSLTELQNFLLIRGILSRTDRFDGNGYLISTIEDVVTTLNREGFWLNVQHDAFY 188
Query: 231 AQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTN 290
Q NLSM SF+LSVSR+V +++ISSPEVNF + I F + VF+FLGK + EPTTN
Sbjct: 189 EQQNLSMSSFLLSVSRTVSIDFISSPEVNFFKKITGSFGRNGPTFVFQFLGKEDFEPTTN 248
Query: 291 QTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAN 350
+TYGS+L NLTF+KTFASGILVPK YI P+D+ YL+PHT++V DAHK L+V+ S FAN
Sbjct: 249 RTYGSILSNLTFVKTFASGILVPKSYILPLDDEQYLVPHTSLVQDAHKAGLQVYVSGFAN 308
Query: 351 DIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLV 410
D+ I++NYS DP++EYLSF+DNGDFSVDGVLSDFP+T SAAVDCF+H+G+NA+K + LV
Sbjct: 309 DVDIAYNYSSDPVSEYLSFVDNGDFSVDGVLSDFPITASAAVDCFSHIGRNATKQVDFLV 368
Query: 411 ISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKF 470
ISK+GASGDYP CT+LAY+KAI DG D IDC VQMS DGVPFCL I+L NS A Q+ F
Sbjct: 369 ISKDGASGDYPGCTDLAYEKAIKDGADVIDCSVQMSSDGVPFCLRSIDLRNSIAALQNTF 428
Query: 471 NSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDF 530
++ +T++PEI + GIF+FSL W EIQ+L P ISNP+ +++FRNP+ KN+GK + LS F
Sbjct: 429 SNRSTSVPEISSVPGIFTFSLTWPEIQSLTPAISNPFRVYRIFRNPREKNSGKLISLSQF 488
Query: 531 LEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGY-NKQTALKVMIQSTDS 589
L++AK SLSGVLIS+ENA YL EKQG+ V +V++ L AGY N T KVMIQST+S
Sbjct: 489 LDLAKTYTSLSGVLISVENAAYLREKQGLDVVQAVLDTLTEAGYSNGTTTTKVMIQSTNS 548
Query: 590 SVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATD 649
SVL+ ++++ YE VYK++E I + + IEDIKKFA++VV++K+SV+P + +F+T T+
Sbjct: 549 SVLVDFKKQSKYETVYKIEETIGNIRDSAIEDIKKFANAVVINKDSVFPNSDSFLTGQTN 608
Query: 650 IVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYR 709
+V+RLQ +LPVYVE F NEFVSQA+DFFSD TVEIN Y GAGI+G ITEFP TAARY+
Sbjct: 609 VVERLQKSQLPVYVELFRNEFVSQAYDFFSDATVEINAYIYGAGINGTITEFPFTAARYK 668
Query: 710 RNRCLKRGDKTPPYMNPVQPGGLLPLITSDYLPPAEAPNPILTEAAVTEPPLPPV-TPVP 768
RNRCL R ++ PPYM PV PGGLL +++ LPPA+APN EA VTEPPL PV P
Sbjct: 669 RNRCLGR-EEVPPYMLPVNPGGLLNVMSPLSLPPAQAPNQDFIEADVTEPPLSPVIAKAP 727
Query: 769 STSPSDGSDGSAAPATPPNGQPKV 792
+++P G+ + A A P+GQ ++
Sbjct: 728 TSTP--GTPSTIAQA--PSGQTRL 747
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 EC: 6 |
| >sp|P96236|GLPQ1_MYCTU Probable glycerophosphoryl diester phosphodiesterase 1 OS=Mycobacterium tuberculosis GN=glpQ1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI 151
PFVVA G S P+ + AY L L A V CDV+LT+D +C D +LD S
Sbjct: 12 PFVVAHRGASAARPEHTLAAYDLALKEGADGVE--CDVRLTRDGHLVCVHDRRLDRTSTG 69
Query: 152 AQIFKT 157
A + T
Sbjct: 70 AGLVST 75
|
Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols. Mycobacterium tuberculosis (taxid: 1773) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 811 | ||||||
| 255576268 | 768 | glycerophosphoryl diester phosphodiester | 0.923 | 0.975 | 0.669 | 0.0 | |
| 225460805 | 757 | PREDICTED: probable glycerophosphoryl di | 0.902 | 0.966 | 0.659 | 0.0 | |
| 83281191 | 752 | putative glycerophosphoryl diester phosp | 0.926 | 0.998 | 0.628 | 0.0 | |
| 356501592 | 753 | PREDICTED: probable glycerophosphoryl di | 0.898 | 0.968 | 0.643 | 0.0 | |
| 356552745 | 754 | PREDICTED: probable glycerophosphoryl di | 0.892 | 0.960 | 0.654 | 0.0 | |
| 224061123 | 724 | predicted protein [Populus trichocarpa] | 0.889 | 0.995 | 0.636 | 0.0 | |
| 18416801 | 759 | putative glycerophosphoryl diester phosp | 0.924 | 0.988 | 0.599 | 0.0 | |
| 4455192 | 770 | putative protein [Arabidopsis thaliana] | 0.924 | 0.974 | 0.599 | 0.0 | |
| 15810483 | 759 | unknown protein [Arabidopsis thaliana] | 0.924 | 0.988 | 0.599 | 0.0 | |
| 15240520 | 766 | putative glycerophosphoryl diester phosp | 0.934 | 0.989 | 0.595 | 0.0 |
| >gi|255576268|ref|XP_002529027.1| glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis] gi|223531507|gb|EEF33338.1| glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1055 bits (2728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/754 (66%), Positives = 613/754 (81%), Gaps = 5/754 (0%)
Query: 58 LVSALVVLHCGVIAQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLI 117
+V+A V+L+ + + VSAQGS + W+TL+G+PP V+ARGGFSGIFPDSSS AY L LI
Sbjct: 20 VVAAFVLLN-SLASLVSAQGSGTS--WKTLSGNPPLVIARGGFSGIFPDSSSAAYQLALI 76
Query: 118 TSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDY 177
T P +ILWCDVQLTKD GIC PDL+LDN+++I+ +FK + KNYLVNG PT GWFS+D+
Sbjct: 77 TGVPDLILWCDVQLTKDGVGICAPDLRLDNSTDISLVFKNKDKNYLVNGAPTQGWFSVDF 136
Query: 178 TLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSM 237
T NDLS+++L QGVYSR++KFDGN F I TV+++ +KPP +WLNIQHDAF+ QHNLSM
Sbjct: 137 TFNDLSSVVLTQGVYSRSNKFDGNLFPIQTVENVT-GLKPPSIWLNIQHDAFFTQHNLSM 195
Query: 238 RSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLL 297
RS+VLS+S+ VV+NYISSPE+ FLR IA+RF P +TKLVFRFLG +EIEP+TNQTY +L
Sbjct: 196 RSYVLSLSKKVVINYISSPEMAFLRGIASRFNPKVTKLVFRFLGPNEIEPSTNQTYSALS 255
Query: 298 KNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFN 357
KNLTFIKTFASGIL+PK YIWPVD SLYL PHT++V DAHK LEVFAS F ND+P SFN
Sbjct: 256 KNLTFIKTFASGILIPKGYIWPVDASLYLQPHTSVVSDAHKAGLEVFASEFYNDVPFSFN 315
Query: 358 YSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGAS 417
YSYDP++EYLSF+DNGDFS+DGVLSDFP+TPS A DCF+ +G+NA+K +N+LVISKNGAS
Sbjct: 316 YSYDPISEYLSFVDNGDFSIDGVLSDFPITPSGAFDCFSQIGQNATKQSNVLVISKNGAS 375
Query: 418 GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTI 477
GDYP CT++AYQKAISDG D IDCPVQMSKDG+PFCLS INLI+ST AQ+ + S+ I
Sbjct: 376 GDYPGCTDMAYQKAISDGADVIDCPVQMSKDGIPFCLSTINLIDSTKVAQTNYGSLAANI 435
Query: 478 PEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNA 537
PE+ GSGI++F+L W +IQTL P I+NPY +KLFRNPK +NAGKF+ LSDFL +AKN
Sbjct: 436 PELEKGSGIYTFNLTWSQIQTLTPAIANPYAIYKLFRNPKFRNAGKFLTLSDFLALAKNT 495
Query: 538 NSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLRE 597
+SLSGVLISIE+A YL EKQ + VT++V+ AL AGY QTA+ VMIQST+S+VLMK ++
Sbjct: 496 SSLSGVLISIEHAAYLIEKQQLPVTDAVLGALSKAGYENQTAIDVMIQSTNSAVLMKFKD 555
Query: 598 KTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSF 657
K +Y+LVYKV ENIRDAL+ TIEDI+ FA+SVV++K SV+P NS F+T ATD+V +LQS
Sbjct: 556 KKNYKLVYKVDENIRDALDATIEDIRTFANSVVVNKNSVFPDNSLFLTGATDVVPKLQSA 615
Query: 658 KLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRRNRCLKRG 717
LPVYVE FSNEFVSQAWDFFSD VEIN+Y GA + GVIT+FP TAARY+RN+CL G
Sbjct: 616 GLPVYVELFSNEFVSQAWDFFSDANVEINSYVIGANVSGVITDFPKTAARYKRNKCLNMG 675
Query: 718 DKTPPYMNPVQPGGLLPLITSDYLPPAEAPNPILTEAAVTEPPLPPVTPVPSTSPSDGSD 777
+ TP YM PVQPG LL LIT DYLPPAEAPNP+LTEA V E PLPPV S S G +
Sbjct: 676 NSTPAYMAPVQPGSLLQLITQDYLPPAEAPNPVLTEADVAEAPLPPVK-ARGPSSSTGDE 734
Query: 778 GSAAPATPPNGQPKVATGIFLSTMAMLLITLLLL 811
AA PPNGQ K+A FLS +A+L L+LL
Sbjct: 735 TRAAAPVPPNGQHKIAACFFLSNLAVLFSVLVLL 768
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225460805|ref|XP_002276757.1| PREDICTED: probable glycerophosphoryl diester phosphodiesterase 1 [Vitis vinifera] gi|297737518|emb|CBI26719.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 991 bits (2563), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/742 (65%), Positives = 591/742 (79%), Gaps = 10/742 (1%)
Query: 62 LVVLHCGVIAQVSAQGS-NATSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSA 120
L +LH +A VSAQGS N TS WQTL G+ P V+ARGGFSG+FPDSSS AYSL L+TS
Sbjct: 10 LFLLHS--VALVSAQGSTNGTSSWQTLNGNAPLVIARGGFSGLFPDSSSAAYSLALMTSL 67
Query: 121 PSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLN 180
+V+LWCDVQLTKD AGICFPD+KL+NAS+I+ +FK + YLVNGV TPGWFS+D+TL
Sbjct: 68 SNVVLWCDVQLTKDGAGICFPDMKLENASDISIVFKNRNNVYLVNGVSTPGWFSVDFTLT 127
Query: 181 DLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSF 240
DL + LNQGVYSR+ +FDGN F ILTVQ+M + I+PPGLWLN+QHD FY +HNLSMR+F
Sbjct: 128 DLETVALNQGVYSRSGRFDGNLFPILTVQEMVKLIRPPGLWLNLQHDVFYTKHNLSMRNF 187
Query: 241 VLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNL 300
VLSVS+SV+V+YISSPEV FLR ++ RF+ + TKL+FRFL K E +P+TNQTYGSLL NL
Sbjct: 188 VLSVSKSVIVDYISSPEVAFLRGVSQRFKATKTKLIFRFLEKEETDPSTNQTYGSLLNNL 247
Query: 301 TFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSY 360
TFIKTFASGILVPK YIWPV+++ YL T +V +AHKE LEVF S+F NDIP S+NYSY
Sbjct: 248 TFIKTFASGILVPKGYIWPVNKNSYLESSTLVVQNAHKEGLEVFGSDFINDIPFSYNYSY 307
Query: 361 DPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDY 420
DP+ E L+FIDN FSVDGVLSDFP+TPSAA+DCFAH+GKNAS L+IS NGASGDY
Sbjct: 308 DPIAEVLNFIDNDAFSVDGVLSDFPITPSAAIDCFAHIGKNASGQEKPLIISYNGASGDY 367
Query: 421 PSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEI 480
PSCT+LAY KAISDGVD +DC VQM+KDG P CLS INL++ST AQ+ F++ TTTI E+
Sbjct: 368 PSCTDLAYTKAISDGVDVLDCNVQMTKDGTPICLSSINLMDSTKVAQTPFSTFTTTITEL 427
Query: 481 MAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSL 540
GSGIF+F+L W++I++L P ISNPY F+L RNP K AGK + LSDFL +AK ANSL
Sbjct: 428 QKGSGIFTFNLTWEDIRSLTPAISNPYSTFRLSRNPAAKTAGKLVSLSDFLSIAKEANSL 487
Query: 541 S-GVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLRE-K 598
S GVLI IE+A +L K G+SVT++V++AL AGY+ T +VMIQST+SSVL + +E K
Sbjct: 488 SGGVLIGIEHAAFLV-KVGLSVTDAVLDALSKAGYDNVTTPRVMIQSTNSSVLKEFKEKK 546
Query: 599 TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFK 658
+YELVY+V ENIRDA + TIEDIKKFA SVV+SK+S+YP N AFIT ATDIV RL+
Sbjct: 547 KNYELVYRVDENIRDASDATIEDIKKFATSVVISKDSIYPENKAFITGATDIVSRLKKNN 606
Query: 659 LPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRRNRCLKRGD 718
LPVYV+ F NEF+SQAWDFFSD TVEIN++ GAGIDGVIT FP TAA YR+NRCLK +
Sbjct: 607 LPVYVQRFDNEFISQAWDFFSDATVEINSFVTGAGIDGVITSFPQTAASYRKNRCLKYKN 666
Query: 719 KTPPYMNPVQPGGLLPLITSDYLPPAEAPNPILTEAAVTEPPLPPVTPVPSTSPSDGSDG 778
P YM+PVQPG L+ +ITSD +PPA AP P+LTE+ V EPPL V P TS ++ G
Sbjct: 667 -APSYMSPVQPGSLMQVITSDDMPPALAPYPVLTESDVAEPPLQEVAPATPTSSTNA--G 723
Query: 779 SAAPA-TPPNGQPKVATGIFLS 799
+ APA T PNGQP++AT I LS
Sbjct: 724 TTAPAPTSPNGQPRIATCIVLS 745
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|83281191|dbj|BAE53680.1| putative glycerophosphoryl diester phosphodiesterase family protein [Nicotiana tabacum] gi|115500890|dbj|BAF34116.1| glycerophosphodiesterase-like protein [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 982 bits (2539), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/765 (62%), Positives = 593/765 (77%), Gaps = 14/765 (1%)
Query: 48 MCNTRALGLLLVSALVVLHCGVIAQVSAQGS-NATSRWQTLTGDPPFVVARGGFSGIFPD 106
M N R++ LL L C A VSAQ S NATS+W TLTGD P V+ARGGFSG+ PD
Sbjct: 1 MWNLRSISCLL------LLCCSAAFVSAQRSDNATSKWLTLTGDAPKVIARGGFSGLMPD 54
Query: 107 SSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNG 166
SS AY L S + WCDVQLTKD GIC D++LDN+S++ +FK +Q YLVNG
Sbjct: 55 SSFNAYILAKAISVADWVAWCDVQLTKDGVGICLSDIRLDNSSDVNVLFKNKQNTYLVNG 114
Query: 167 VPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQH 226
VP GWFS+D+ DL+ + L QGV+SR+ +FDG QILTVQD+A Q+KPPGLWLNIQH
Sbjct: 115 VPQKGWFSVDFNFKDLALVSLKQGVFSRSPRFDGTPQQILTVQDVASQVKPPGLWLNIQH 174
Query: 227 DAFYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIE 286
D+FY+Q NLS+RSFV+S+SRSV+VNYISSPEVNFLRSIA RF P +TK VFRFLG+ IE
Sbjct: 175 DSFYSQRNLSIRSFVVSLSRSVIVNYISSPEVNFLRSIARRFNPRVTKFVFRFLGEDGIE 234
Query: 287 PTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFAS 346
P+TNQTYGSLLKNLTF+KTFASGILVPK YIWPVD SLYL PHT++VLDAHKE LE+FA+
Sbjct: 235 PSTNQTYGSLLKNLTFVKTFASGILVPKHYIWPVDNSLYLQPHTSVVLDAHKEGLEIFAA 294
Query: 347 NFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSA 406
+FAND+P ++NYSYDP+ EYLS+IDNGDFSVDGVLSDFPLTPS++VDCF+HLGKN
Sbjct: 295 DFANDVPSAYNYSYDPVAEYLSYIDNGDFSVDGVLSDFPLTPSSSVDCFSHLGKNDKPQV 354
Query: 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAA 466
L +I+ GASGDYP CT+LAY KA SDG D + CPVQM+KD VPFCL INLI+ T AA
Sbjct: 355 KLQIITSEGASGDYPGCTDLAYTKAASDGADVLGCPVQMTKDRVPFCLGSINLIDKTTAA 414
Query: 467 QSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMK 526
QS F++I TT+PE+ +GI + +L W EIQ+L P ISN + +F+LFRNPK +N G FM
Sbjct: 415 QSPFSNIATTVPELKITNGILTINLTWTEIQSLKPAISNRWSEFRLFRNPKARNDGNFMS 474
Query: 527 LSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQS 586
L+DFL AKNA S+SGV+IS+ENA Y+A KQG+ VT +V++AL AGYN QTA KV+IQS
Sbjct: 475 LADFLTFAKNATSVSGVMISVENAAYMA-KQGLGVTGAVLDALSKAGYNNQTAKKVLIQS 533
Query: 587 TDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITS 646
TDSSVL + + K+SYELVY V ++IRD + TI +IK FA SV+++K+SV+P AFI +
Sbjct: 534 TDSSVLEEFK-KSSYELVYGVGDDIRDIESSTILEIKTFAKSVIITKQSVFPSEDAFIIA 592
Query: 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAA 706
T++VQ+LQS L VYV+ +NEFVSQ+WDFFSD +VE+N Y GAGIDGVITE+P TAA
Sbjct: 593 QTNVVQKLQSSNLTVYVQLLNNEFVSQSWDFFSDSSVELNNYAVGAGIDGVITEYPATAA 652
Query: 707 RYRRNRCLKRGDKTPPYMNPVQPGGLLPLITSDYLPPAEAPNPILTEAAVTEPPLPPVTP 766
RYRRNRCL D +PPYM VQPG LL L+ +LPPAEAPNP+LTE+ V EPPLPPV
Sbjct: 653 RYRRNRCLGFKD-SPPYMTSVQPGSLLELMAPQFLPPAEAPNPVLTESDVVEPPLPPVAK 711
Query: 767 VPSTSPSDGSDGSAAPATPPNGQPKVATGIFLSTMAMLLITLLLL 811
+ +PS+ +GSA TPPNGQ V I +S++A+LL T++++
Sbjct: 712 I---NPSN-DNGSAIAPTPPNGQSSVVASILMSSVAILLATIMVV 752
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501592|ref|XP_003519608.1| PREDICTED: probable glycerophosphoryl diester phosphodiesterase 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 976 bits (2523), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/740 (64%), Positives = 577/740 (77%), Gaps = 11/740 (1%)
Query: 73 VSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLT 132
+SAQ S W TL+G P VVARGGFSG+ PDSS +Y+L +ITS P V +WCDVQLT
Sbjct: 23 ISAQ----RSTWNTLSGGAPLVVARGGFSGMLPDSSDASYNLAVITSGPDVYIWCDVQLT 78
Query: 133 KDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVY 192
KD GIC PD+ L N++ IA + + +YLVNGVPT G+F +DYTL DLS+++L QGVY
Sbjct: 79 KDGLGICQPDINLANSTYIASAYPNKTTSYLVNGVPTRGYFPLDYTLKDLSSVVLTQGVY 138
Query: 193 SRTDKFDGNGFQILTVQDMAR-QIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVN 251
SR++ FDGN F ILTV+D+A+ + KP G WLNIQHDAFYAQHNLSMRSFVLSVSR VV +
Sbjct: 139 SRSNLFDGNNFGILTVEDLAKLRQKPKGKWLNIQHDAFYAQHNLSMRSFVLSVSRKVVFS 198
Query: 252 YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGIL 311
YISSPEV FLRSIA+RF P TKLVFRF+G S+++P+TN+TYGSLL+NLTFIKTFASGIL
Sbjct: 199 YISSPEVGFLRSIASRFNPKTTKLVFRFMGLSDVDPSTNRTYGSLLQNLTFIKTFASGIL 258
Query: 312 VPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFID 371
VPK YIWPVD +LYL HT++V DAHK LEVFAS+F ND+P SFNYSYDPL EYL F+D
Sbjct: 259 VPKGYIWPVDATLYLQSHTSLVSDAHKAGLEVFASDFVNDVPFSFNYSYDPLAEYLQFVD 318
Query: 372 NGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKA 431
NGDFSVDGVLSDFP+TP A+ CFAHLG NA+K LVISK GASGDYP+CT+LAY KA
Sbjct: 319 NGDFSVDGVLSDFPITPFEAIGCFAHLGTNATKKDKTLVISKYGASGDYPACTDLAYNKA 378
Query: 432 ISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSL 491
ISDGVD +DCPVQMSKDG PFCL+ I+LI ST AQS F+ TIPEI +G GIF+F+L
Sbjct: 379 ISDGVDVLDCPVQMSKDGTPFCLNSIDLIESTTVAQSSFSKFAMTIPEIKSGIGIFAFNL 438
Query: 492 IWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAV 551
W++I++L P I NP+ K++LFRNP++KNAG + LSDFL + KN SLSGV I +ENA
Sbjct: 439 TWNDIKSLTPSILNPFAKYRLFRNPRSKNAGTLLALSDFLSLTKNQTSLSGVAIIVENAA 498
Query: 552 YLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENI 611
YLA+KQG+SV ++V+ AL AGY+K + KV IQST+SSVL+K +EKTSYELVYK+ E I
Sbjct: 499 YLADKQGLSVIDAVIGALSKAGYDKPGSQKVYIQSTNSSVLLKFKEKTSYELVYKIDETI 558
Query: 612 RDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFV 671
DA N +EDIK FA SVV++K+S+ P N F+T+ T+IV +L++ L V+VETFSNEFV
Sbjct: 559 GDAANAAVEDIKSFASSVVVNKDSIIPNNDQFLTAYTNIVPKLKNASLSVFVETFSNEFV 618
Query: 672 SQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRRNRCLKRGDKTPPYMNPVQPGG 731
SQAWDFFSD TVEINTY GA IDG+IT+FP TA RYRRN+CL GD P YM PVQPG
Sbjct: 619 SQAWDFFSDATVEINTYITGAQIDGIITDFPKTADRYRRNKCLGLGDNKPTYMEPVQPGS 678
Query: 732 LLPLITSDYLPPAEAPNPILTEAAVTEPPLPPVTPV-PSTSPSDGSDGSAAPATPPNGQP 790
L LIT ++LPPAEAP P LTE+ V EPPLPPV + P++SP+ G+ N QP
Sbjct: 679 LFGLITKEFLPPAEAPFPPLTESEVAEPPLPPVAKIAPASSPNAGTKSPQG-----NSQP 733
Query: 791 KVATGIFLSTMAMLLITLLL 810
KV FLST+A+ + +LLL
Sbjct: 734 KVTVCFFLSTLAVFIASLLL 753
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552745|ref|XP_003544723.1| PREDICTED: probable glycerophosphoryl diester phosphodiesterase 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 962 bits (2488), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/733 (65%), Positives = 575/733 (78%), Gaps = 9/733 (1%)
Query: 82 SRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFP 141
S W TL G P VVARGGFSGI PDSS AY+L +I++ P V +WCDVQLTKD GIC P
Sbjct: 28 STWNTLGGGAPLVVARGGFSGILPDSSGAAYNLAVISTGPDVYIWCDVQLTKDGVGICQP 87
Query: 142 DLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGN 201
D+ L N++ IA I+ + +Y VNGVPT G+F +DYTL DLS++IL QGVYSR+ FDGN
Sbjct: 88 DINLANSTYIATIYPNKTTSYSVNGVPTSGYFPLDYTLKDLSSVILTQGVYSRSTLFDGN 147
Query: 202 GFQILTVQDMAR-QIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVNYISSPEVNF 260
GF ILTV D+ + KP G+WLNIQHDAFYAQHNLSMRSFVLSVSRSVV +YISSPEV F
Sbjct: 148 GFGILTVDDLVKLDQKPKGIWLNIQHDAFYAQHNLSMRSFVLSVSRSVVFSYISSPEVGF 207
Query: 261 LRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPV 320
LRSIA+RF P TKLVFRF+ +S+++P+TNQTYGSLLKNLTFIKTFASGILVPK YIWPV
Sbjct: 208 LRSIASRFNPKTTKLVFRFMRQSDVDPSTNQTYGSLLKNLTFIKTFASGILVPKGYIWPV 267
Query: 321 DESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGV 380
D +LYL HT++V DAHK LEVFAS+F ND+P SFNYSYDPL EYL F+DNGDFSVDGV
Sbjct: 268 DATLYLQSHTSLVSDAHKAGLEVFASDFVNDVPSSFNYSYDPLAEYLQFVDNGDFSVDGV 327
Query: 381 LSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFID 440
LSDFP+TP A+ CFAHLG NA+K LVISK GASGDYP+CT+LAY KAISDGVD +D
Sbjct: 328 LSDFPITPFEAIGCFAHLGTNATKKDKTLVISKYGASGDYPACTDLAYNKAISDGVDVLD 387
Query: 441 CPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLI 500
CPVQMSKDG PFCL+ I+LI ST AQS F+ TIPEI +GSGIF+F+L W++I+ L
Sbjct: 388 CPVQMSKDGTPFCLNSIDLIESTTVAQSSFSKFAMTIPEIKSGSGIFAFNLTWNDIKILT 447
Query: 501 PQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMS 560
P I NP+ K++LFRNP++KNAG + LSDFL + KN SLSGV I +ENA YLA+KQG+S
Sbjct: 448 PSILNPFAKYRLFRNPRSKNAGTLLALSDFLSLTKNQTSLSGVAIIVENAAYLADKQGLS 507
Query: 561 VTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIE 620
V ++V+ AL AGY+K + KV IQST+SSVL+K +EKTSYELVYK+ E + DA N +E
Sbjct: 508 VIDAVIGALSKAGYDKPGSQKVYIQSTNSSVLLKFKEKTSYELVYKIDETVGDAANAAVE 567
Query: 621 DIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSD 680
DIK FA SVV++K+SV P N+ F+T+ T+IV +L++ L V+VETFSNEFVSQAWDFFSD
Sbjct: 568 DIKSFASSVVVNKDSVIPNNNKFLTAYTNIVPKLKNANLSVFVETFSNEFVSQAWDFFSD 627
Query: 681 PTVEINTYYEGAGIDGVITEFPMTAARYRRNRCLKRGDKTPPYMNPVQPGGLLPLITSDY 740
PTVEIN+Y EGA IDG+IT+FP TA RYRRN+CL GD P YM PVQPGGL LIT ++
Sbjct: 628 PTVEINSYIEGAQIDGIITDFPKTADRYRRNKCLGLGDNKPTYMEPVQPGGLFGLITKEF 687
Query: 741 LPPAEAPNPILTEAAVTEPPLPPVTPV-PSTSPSDGSDGSAAPATPP-NGQPKVATGIFL 798
LPPAEAP P LTE+ V E PLPPV + P++SP +A P N QPKV FL
Sbjct: 688 LPPAEAPLPPLTESEVAESPLPPVAKIAPASSP------NARTKFPQGNSQPKVTVCFFL 741
Query: 799 STMAMLLITLLLL 811
ST+A+ + +LLLL
Sbjct: 742 STLAVFIASLLLL 754
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061123|ref|XP_002300353.1| predicted protein [Populus trichocarpa] gi|222847611|gb|EEE85158.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 954 bits (2466), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/727 (63%), Positives = 573/727 (78%), Gaps = 6/727 (0%)
Query: 85 QTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLK 144
+ G+ P V+ARGGFSG+FPDSSS+A+ +TS P V+LWCDVQLTKD GIC PDL+
Sbjct: 4 HKILGNRPLVIARGGFSGLFPDSSSVAFQFATLTSLPDVVLWCDVQLTKDGVGICAPDLR 63
Query: 145 LDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQ 204
LDN+++IAQ+ K + K YLVNG+PT GWF++D+TLN+LS + L QG+YSR+++FD N +
Sbjct: 64 LDNSTSIAQVMKNKDKLYLVNGIPTQGWFTVDFTLNELSLVSLAQGIYSRSERFD-NTYP 122
Query: 205 ILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSI 264
I TV+D+A +KPPGLWLNIQHDAF+ QHNLSMR +VLS+SR VV+N++SSPE FLRSI
Sbjct: 123 IQTVEDVA-NLKPPGLWLNIQHDAFFTQHNLSMRIYVLSLSRRVVINHLSSPEAGFLRSI 181
Query: 265 AARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESL 324
RF ++TKLVFRFL + IEP+TN+TYGSL KN TFIKTFASGIL+PK YIWP+D S
Sbjct: 182 VKRFNLNITKLVFRFLEPNVIEPSTNETYGSLSKNFTFIKTFASGILIPKSYIWPLDASN 241
Query: 325 YLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDF 384
YL P T+IV DAHK LEVF S+F ND +S+NYSYDP+TEYLSF+DNGDFSVDGVLSDF
Sbjct: 242 YLQPQTSIVSDAHKAGLEVFVSDFYNDAQLSYNYSYDPVTEYLSFVDNGDFSVDGVLSDF 301
Query: 385 PLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQ 444
P+TPSA +DCF+ LGKNA+ NL VISKNGASGDYP CT+LAYQKAI DG D IDCPVQ
Sbjct: 302 PVTPSATIDCFSGLGKNATPQVNLSVISKNGASGDYPGCTDLAYQKAILDGADVIDCPVQ 361
Query: 445 MSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQIS 504
+SKDG+PFCL INL +ST AQS +++ IP+I AGSGIF+FSL W EIQ LIP IS
Sbjct: 362 ISKDGIPFCLGSINLYDSTTVAQSIYSNREQNIPQIKAGSGIFTFSLTWSEIQNLIPVIS 421
Query: 505 NPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNS 564
NPY K++L RNPK KN+GKF+ LSDFL +AKN +SLSGVLISIENA YL EK+G+ +T+
Sbjct: 422 NPYSKYELLRNPKFKNSGKFLTLSDFLALAKNTSSLSGVLISIENAAYLIEKEGLPITDK 481
Query: 565 VMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKK 624
V+E L AGY+ T+ KVMI+ST+SSVLMK R++++YELVY+++E+I+DA + ++DIK
Sbjct: 482 VLEVLSLAGYDDPTSKKVMIESTNSSVLMKFRDESNYELVYRIEEDIQDAEDAALKDIKD 541
Query: 625 FADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVE 684
FA SVV+SK SV+P +S+F++ T++V +LQS L VYVETFSNEFVSQAWDFFSD TVE
Sbjct: 542 FASSVVISKASVFPESSSFLSGVTNVVPKLQSHGLSVYVETFSNEFVSQAWDFFSDSTVE 601
Query: 685 INTYYEGAGIDGVITEFPMTAARYRRNRCLKRGDKTPPYMNPVQPGGLLPLITSDYLPPA 744
IN+Y G I GVITEFP+T+ARY+RNRCL G + P YM+P QPGGL+ LI+ LPPA
Sbjct: 602 INSYVMGVNISGVITEFPLTSARYKRNRCL--GKELPSYMSPAQPGGLMQLISPFALPPA 659
Query: 745 EAPNPILTEAAVTEPPLPPVTPVPSTSPSDGSDGSAAPATPPNGQPKVATGIFLSTMAML 804
E PNP+LT V E PLP T P P G+ +A P PNG PK+ IFL +AML
Sbjct: 660 EPPNPVLTAPDVVEGPLPSHTASPPPVPGGGA--TAVPPGAPNGLPKIGACIFLPNLAML 717
Query: 805 LITLLLL 811
+ LLLL
Sbjct: 718 ITILLLL 724
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18416801|ref|NP_567755.1| putative glycerophosphoryl diester phosphodiesterase 2 [Arabidopsis thaliana] gi|332278205|sp|Q9SZ11.3|GLPQ2_ARATH RecName: Full=Probable glycerophosphoryl diester phosphodiesterase 2; Flags: Precursor gi|332659838|gb|AEE85238.1| putative glycerophosphoryl diester phosphodiesterase 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 954 bits (2465), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/764 (59%), Positives = 584/764 (76%), Gaps = 14/764 (1%)
Query: 55 GLLLVSALVVLHCGVI------AQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSS 108
GLL S+L L CGVI AQ+ AQ S W TLTGDPP V+ARGGFSG+FPDSS
Sbjct: 3 GLLRASSL--LLCGVILIQLLAAQIHAQSKKPKSPWPTLTGDPPLVIARGGFSGLFPDSS 60
Query: 109 SIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVP 168
AY+ ++TS P +LWCDVQLTKD GICFPDL + N+S+I ++ T+QK+Y VNGVP
Sbjct: 61 YDAYNFAILTSVPDAVLWCDVQLTKDALGICFPDLTMRNSSSIEAVYPTRQKSYPVNGVP 120
Query: 169 TPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDA 228
T GWF+ID++L DL ++ L +G+ SR++KFDGN I+TVQ ++ Q+KP WLN+QHDA
Sbjct: 121 TSGWFTIDFSLKDLKDVNLIRGILSRSEKFDGNSNPIMTVQSVSTQMKPSFFWLNVQHDA 180
Query: 229 FYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPT 288
FYAQHNLSM SF+++ S++V++++ISSPEVNF + IA RF + LVFRFLG+ E EPT
Sbjct: 181 FYAQHNLSMSSFLVAASKTVLIDFISSPEVNFFKKIAGRFGRNGPSLVFRFLGQDEFEPT 240
Query: 289 TNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNF 348
TN+TYGS+L NLTF+KTFASGILVPK YI P+D+ YLLPHT++V DAHK LEVF S F
Sbjct: 241 TNRTYGSILSNLTFVKTFASGILVPKSYILPLDDQQYLLPHTSLVQDAHKAGLEVFVSGF 300
Query: 349 ANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANL 408
ANDI I+ +YS+DP++EYLSF+DNG+FSVDGVLSDFP+T SA++DCF+H+G+NA+K +
Sbjct: 301 ANDIDIAHDYSFDPVSEYLSFVDNGNFSVDGVLSDFPITASASLDCFSHVGRNATKQVDF 360
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
LVI+K+GASGDYP CT+LAY+KAI DG D IDC VQ+S DG PFCLS I+L NST + +
Sbjct: 361 LVITKDGASGDYPGCTDLAYKKAIKDGADVIDCSVQLSSDGTPFCLSSIDLGNSTTVSLT 420
Query: 469 KFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLS 528
F + +TT+PE+ + I++FSL W EIQTL P ISNPY LFRNPK KNAGK LS
Sbjct: 421 AFRNRSTTVPELGSLGAIYTFSLTWAEIQTLTPAISNPYRVTSLFRNPKQKNAGKLFSLS 480
Query: 529 DFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD 588
DFL +AKN+ SLSGVLIS+ENA YL E+QG+ V +V++ L GY+ TA KVMIQST+
Sbjct: 481 DFLSLAKNSTSLSGVLISVENAAYLREEQGLDVVKAVLDTLTQTGYSNSTATKVMIQSTN 540
Query: 589 SSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648
SSVL+ ++++ YE VYKV+ENIRD L+ IEDIKKFAD+VV+ K SV+P+ +FIT+ T
Sbjct: 541 SSVLVDFKKQSQYETVYKVEENIRDILDSAIEDIKKFADAVVIQKLSVFPVAQSFITTQT 600
Query: 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARY 708
++V++LQ +LPVYVE F NEF+SQ +DFF+D TVEIN+Y GAGI+G ITEFP TAARY
Sbjct: 601 NVVEKLQKSQLPVYVELFQNEFLSQPYDFFADATVEINSYITGAGINGTITEFPFTAARY 660
Query: 709 RRNRCLKRGDKTPPYMNPVQPGGLLPLITSDYLPPAEAPNPILTEAAVTEPPLPPVTP-V 767
+RN CL R +T PYM P QPG LL L++ PPAEAPNP+ T+A VTEPPLPPVT
Sbjct: 661 KRNLCLGR-KETIPYMAPAQPGALLTLVSPTAFPPAEAPNPVFTDADVTEPPLPPVTAKA 719
Query: 768 PSTSPSDGSDGSAAPATPPNGQPKVATGIFLSTMAMLLITLLLL 811
P++SP S + AP+ GQ ++ + LS AM+L +LLLL
Sbjct: 720 PTSSPGTPSTNAQAPS----GQTRITLSLLLSVFAMVLASLLLL 759
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4455192|emb|CAB36515.1| putative protein [Arabidopsis thaliana] gi|7269521|emb|CAB79524.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 953 bits (2463), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/764 (59%), Positives = 584/764 (76%), Gaps = 14/764 (1%)
Query: 55 GLLLVSALVVLHCGVI------AQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSS 108
GLL S+L L CGVI AQ+ AQ S W TLTGDPP V+ARGGFSG+FPDSS
Sbjct: 14 GLLRASSL--LLCGVILIQLLAAQIHAQSKKPKSPWPTLTGDPPLVIARGGFSGLFPDSS 71
Query: 109 SIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVP 168
AY+ ++TS P +LWCDVQLTKD GICFPDL + N+S+I ++ T+QK+Y VNGVP
Sbjct: 72 YDAYNFAILTSVPDAVLWCDVQLTKDALGICFPDLTMRNSSSIEAVYPTRQKSYPVNGVP 131
Query: 169 TPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDA 228
T GWF+ID++L DL ++ L +G+ SR++KFDGN I+TVQ ++ Q+KP WLN+QHDA
Sbjct: 132 TSGWFTIDFSLKDLKDVNLIRGILSRSEKFDGNSNPIMTVQSVSTQMKPSFFWLNVQHDA 191
Query: 229 FYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPT 288
FYAQHNLSM SF+++ S++V++++ISSPEVNF + IA RF + LVFRFLG+ E EPT
Sbjct: 192 FYAQHNLSMSSFLVAASKTVLIDFISSPEVNFFKKIAGRFGRNGPSLVFRFLGQDEFEPT 251
Query: 289 TNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNF 348
TN+TYGS+L NLTF+KTFASGILVPK YI P+D+ YLLPHT++V DAHK LEVF S F
Sbjct: 252 TNRTYGSILSNLTFVKTFASGILVPKSYILPLDDQQYLLPHTSLVQDAHKAGLEVFVSGF 311
Query: 349 ANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANL 408
ANDI I+ +YS+DP++EYLSF+DNG+FSVDGVLSDFP+T SA++DCF+H+G+NA+K +
Sbjct: 312 ANDIDIAHDYSFDPVSEYLSFVDNGNFSVDGVLSDFPITASASLDCFSHVGRNATKQVDF 371
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
LVI+K+GASGDYP CT+LAY+KAI DG D IDC VQ+S DG PFCLS I+L NST + +
Sbjct: 372 LVITKDGASGDYPGCTDLAYKKAIKDGADVIDCSVQLSSDGTPFCLSSIDLGNSTTVSLT 431
Query: 469 KFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLS 528
F + +TT+PE+ + I++FSL W EIQTL P ISNPY LFRNPK KNAGK LS
Sbjct: 432 AFRNRSTTVPELGSLGAIYTFSLTWAEIQTLTPAISNPYRVTSLFRNPKQKNAGKLFSLS 491
Query: 529 DFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD 588
DFL +AKN+ SLSGVLIS+ENA YL E+QG+ V +V++ L GY+ TA KVMIQST+
Sbjct: 492 DFLSLAKNSTSLSGVLISVENAAYLREEQGLDVVKAVLDTLTQTGYSNSTATKVMIQSTN 551
Query: 589 SSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648
SSVL+ ++++ YE VYKV+ENIRD L+ IEDIKKFAD+VV+ K SV+P+ +FIT+ T
Sbjct: 552 SSVLVDFKKQSQYETVYKVEENIRDILDSAIEDIKKFADAVVIQKLSVFPVAQSFITTQT 611
Query: 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARY 708
++V++LQ +LPVYVE F NEF+SQ +DFF+D TVEIN+Y GAGI+G ITEFP TAARY
Sbjct: 612 NVVEKLQKSQLPVYVELFQNEFLSQPYDFFADATVEINSYITGAGINGTITEFPFTAARY 671
Query: 709 RRNRCLKRGDKTPPYMNPVQPGGLLPLITSDYLPPAEAPNPILTEAAVTEPPLPPVTP-V 767
+RN CL R + T PYM P QPG LL L++ PPAEAPNP+ T+A VTEPPLPPVT
Sbjct: 672 KRNLCLGRKE-TIPYMAPAQPGALLTLVSPTAFPPAEAPNPVFTDADVTEPPLPPVTAKA 730
Query: 768 PSTSPSDGSDGSAAPATPPNGQPKVATGIFLSTMAMLLITLLLL 811
P++SP S + AP+ GQ ++ + LS AM+L +LLLL
Sbjct: 731 PTSSPGTPSTNAQAPS----GQTRITLSLLLSVFAMVLASLLLL 770
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15810483|gb|AAL07129.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 952 bits (2462), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/764 (59%), Positives = 583/764 (76%), Gaps = 14/764 (1%)
Query: 55 GLLLVSALVVLHCGVI------AQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSS 108
GLL S+L L CGVI AQ+ AQ S W TLTGDPP V+ARGGFSG+FPDSS
Sbjct: 3 GLLRASSL--LLCGVILIQLLAAQIHAQSKKPKSPWPTLTGDPPLVIARGGFSGLFPDSS 60
Query: 109 SIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVP 168
AY+ ++TS P +LWCDVQLTKD GICFPDL + N+S+I ++ T+QK+Y VNGVP
Sbjct: 61 YDAYNFAILTSVPDAVLWCDVQLTKDALGICFPDLTMRNSSSIEAVYPTRQKSYPVNGVP 120
Query: 169 TPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDA 228
T GWF+ID++L DL ++ L +G+ SR+ KFDGN I+TVQ ++ Q+KP WLN+QHDA
Sbjct: 121 TSGWFTIDFSLKDLKDVNLIRGILSRSKKFDGNSNPIMTVQSVSTQMKPSFFWLNVQHDA 180
Query: 229 FYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPT 288
FYAQHNLSM SF+++ S++V++++ISSPEVNF + IA RF + LVFRFLG+ E EPT
Sbjct: 181 FYAQHNLSMSSFLVAASKTVLIDFISSPEVNFFKKIAGRFGRNGPSLVFRFLGQDEFEPT 240
Query: 289 TNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNF 348
TN+TYGS+L NLTF+KTFASGILVPK YI P+D+ YLLPHT++V DAHK LEVF S F
Sbjct: 241 TNRTYGSILSNLTFVKTFASGILVPKSYILPLDDQQYLLPHTSLVQDAHKAGLEVFVSGF 300
Query: 349 ANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANL 408
ANDI I+ +YS+DP++EYLSF+DNG+FSVDGVLSDFP+T SA++DCF+H+G+NA+K +
Sbjct: 301 ANDIDIAHDYSFDPVSEYLSFVDNGNFSVDGVLSDFPITASASLDCFSHVGRNATKQVDF 360
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
LVI+K+GASGDYP CT+LAY+KAI DG D IDC VQ+S DG PFCLS I+L NST + +
Sbjct: 361 LVITKDGASGDYPGCTDLAYKKAIKDGADVIDCSVQLSSDGTPFCLSSIDLGNSTTVSLT 420
Query: 469 KFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLS 528
F + +TT+PE+ + I++FSL W EIQTL P ISNPY LFRNPK KNAGK LS
Sbjct: 421 AFRNRSTTVPELGSLGAIYTFSLTWAEIQTLTPAISNPYRVTSLFRNPKQKNAGKLFSLS 480
Query: 529 DFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD 588
DFL +AKN+ SLSGVLIS+ENA YL E+QG+ V +V++ L GY+ TA KVMIQST+
Sbjct: 481 DFLSLAKNSTSLSGVLISVENAAYLREEQGLDVVKAVLDTLTQTGYSNSTATKVMIQSTN 540
Query: 589 SSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648
SSVL+ ++++ YE VYKV+ENIRD L+ IEDIKKFAD+VV+ K SV+P+ +FIT+ T
Sbjct: 541 SSVLVDFKKQSQYETVYKVEENIRDILDSAIEDIKKFADAVVIQKLSVFPVAQSFITTQT 600
Query: 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARY 708
++V++LQ +LPVYVE F NEF+SQ +DFF+D TVEIN+Y GAGI+G ITEFP TAARY
Sbjct: 601 NVVEKLQKSQLPVYVELFQNEFLSQPYDFFADATVEINSYITGAGINGTITEFPFTAARY 660
Query: 709 RRNRCLKRGDKTPPYMNPVQPGGLLPLITSDYLPPAEAPNPILTEAAVTEPPLPPVTP-V 767
+RN CL R + T PYM P QPG LL L++ PPAEAPNP+ T+A VTEPPLPPVT
Sbjct: 661 KRNLCLGRKE-TIPYMAPAQPGALLTLVSPTAFPPAEAPNPVFTDADVTEPPLPPVTAKA 719
Query: 768 PSTSPSDGSDGSAAPATPPNGQPKVATGIFLSTMAMLLITLLLL 811
P++SP S + AP+ GQ ++ + LS AM+L +LLLL
Sbjct: 720 PTSSPGTPSTNAQAPS----GQTRITLSLLLSVFAMVLASLLLL 759
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240520|ref|NP_200359.1| putative glycerophosphoryl diester phosphodiesterase 1 [Arabidopsis thaliana] gi|34395718|sp|Q9FJ62.1|GLPQ1_ARATH RecName: Full=Probable glycerophosphoryl diester phosphodiesterase 1; Flags: Precursor gi|9758180|dbj|BAB08565.1| unnamed protein product [Arabidopsis thaliana] gi|53828545|gb|AAU94382.1| At5g55480 [Arabidopsis thaliana] gi|55733753|gb|AAV59273.1| At5g55480 [Arabidopsis thaliana] gi|332009250|gb|AED96633.1| putative glycerophosphoryl diester phosphodiesterase 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 948 bits (2451), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/772 (59%), Positives = 579/772 (75%), Gaps = 14/772 (1%)
Query: 48 MCNTR---ALGLLLVSALVVLHCGVIAQVSAQ--GSNATSRWQTLTGDPPFVVARGGFSG 102
M N R + +L S + L +I +S Q + S WQTLTGD P V+ARGGFSG
Sbjct: 1 MINMRDNPTMHVLQASKFLFLALILIQLLSTQLFAQRSKSPWQTLTGDAPLVIARGGFSG 60
Query: 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNY 162
+ PDSS AYS TS P +LWCDVQLTKD G+CFPD+K+ NASNI ++ ++ +Y
Sbjct: 61 LLPDSSLDAYSFVSQTSVPGAVLWCDVQLTKDAIGLCFPDVKMMNASNIQDVYPKRKTSY 120
Query: 163 LVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWL 222
L+NGVPT WF+ID+ DL+ +IL QG+ SR+ FDGN + I TV+D++ Q+KP G WL
Sbjct: 121 LLNGVPTQDWFTIDFNFKDLTKVILKQGILSRSAAFDGNSYGISTVKDISTQLKPEGFWL 180
Query: 223 NIQHDAFYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGK 282
N+QHDAFYAQHNLSM SF+LS+S++V+++Y+SSPEVNF R+I RF + K VFRFL K
Sbjct: 181 NVQHDAFYAQHNLSMSSFLLSISKTVIIDYLSSPEVNFFRNIGRRFGRNGPKFVFRFLEK 240
Query: 283 SEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLE 342
++E +TNQTYGSL NLTF+KTFASG+LVPK YIWP+ ES YLLP T+ V DAHK LE
Sbjct: 241 DDVEVSTNQTYGSLAGNLTFLKTFASGVLVPKSYIWPI-ESQYLLPRTSFVQDAHKAGLE 299
Query: 343 VFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNA 402
V+AS F ND +++NYS+DPL EYLSF+DNGDFSVDG+LSDFPLT S+AVDCF+HLG NA
Sbjct: 300 VYASGFGNDFDLAYNYSFDPLAEYLSFMDNGDFSVDGLLSDFPLTASSAVDCFSHLGSNA 359
Query: 403 SKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINS 462
S + LVISKNGASGDYP CT+LAY KAI DG D IDC +QMS DG+PFCLS INL S
Sbjct: 360 SSQVDFLVISKNGASGDYPGCTDLAYTKAIKDGADVIDCSLQMSSDGIPFCLSSINLGES 419
Query: 463 TNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFK-FKLFRNPKNKNA 521
TN QS F + +TT+PEI + GI+SFSL W EIQTL P I NPY + F +FRNP+ +++
Sbjct: 420 TNVVQSPFRNRSTTVPEIGSLPGIYSFSLAWSEIQTLRPAIENPYSREFTMFRNPRERSS 479
Query: 522 GKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGY-NKQTAL 580
GKF+ LSDFL +AKN++SL+GVLIS+ENA YL EKQG+ +V++ L AGY NK T
Sbjct: 480 GKFVSLSDFLNLAKNSSSLTGVLISVENATYLREKQGLDAVKAVLDTLTEAGYSNKTTTT 539
Query: 581 KVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLN 640
+VMIQST+SSVL+ ++++ YE VYKV+E IRD L+ IEDIKKFAD+VV+SK+SV+P +
Sbjct: 540 RVMIQSTNSSVLIDFKKQSRYETVYKVEETIRDILDTAIEDIKKFADAVVISKKSVFPTS 599
Query: 641 SAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITE 700
+F T T +V+RLQ F+LPVYVE F NEFVSQ WDFF+D TVEIN++ GAGI+G ITE
Sbjct: 600 ESFTTGQTKLVERLQKFQLPVYVEVFRNEFVSQPWDFFADATVEINSHVTGAGINGTITE 659
Query: 701 FPMTAARYRRNRCLKRGDKTPPYMNPVQPGGLLPLITSDYLPPAEAPNPILTEAAVTEPP 760
FP+TAARY+RN CL R D PPYM PVQP GLL +++ LPPAEAP+P+ T+A VTEPP
Sbjct: 660 FPLTAARYKRNSCLTRKD-VPPYMIPVQPAGLLTIVSPASLPPAEAPSPVFTDADVTEPP 718
Query: 761 LPPVTP-VPSTSPSDGSDGSAAPATPPNGQPKVATGIFLSTMAMLLITLLLL 811
LPPV+ P+T+P S G + PNGQ +VA + LS A + +LLLL
Sbjct: 719 LPPVSARAPTTTPGPQSTGEKS----PNGQTRVALSLLLSAFATVFASLLLL 766
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 811 | ||||||
| TAIR|locus:2116377 | 759 | SHV3 "SHAVEN 3" [Arabidopsis t | 0.842 | 0.899 | 0.602 | 5.3e-230 | |
| TAIR|locus:2173977 | 766 | SVL1 "SHV3-like 1" [Arabidopsi | 0.832 | 0.881 | 0.612 | 2.3e-229 | |
| TAIR|locus:2085710 | 729 | SVL3 "SHV3-like 3" [Arabidopsi | 0.802 | 0.893 | 0.524 | 2.1e-180 | |
| TAIR|locus:2161248 | 750 | SVL5 "SHV3-like 5" [Arabidopsi | 0.829 | 0.897 | 0.471 | 1.5e-168 | |
| TAIR|locus:2155816 | 753 | SVL4 "SHV3-like 4" [Arabidopsi | 0.838 | 0.903 | 0.479 | 1.4e-167 | |
| TAIR|locus:2019642 | 392 | GDPD5 "glycerophosphodiester p | 0.252 | 0.522 | 0.273 | 4.7e-08 | |
| TAIR|locus:2142823 | 372 | GDPD6 "glycerophosphodiester p | 0.271 | 0.591 | 0.233 | 5.3e-08 |
| TAIR|locus:2116377 SHV3 "SHAVEN 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2219 (786.2 bits), Expect = 5.3e-230, P = 5.3e-230
Identities = 416/690 (60%), Positives = 524/690 (75%)
Query: 67 CGVI------AQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSA 120
CGVI AQ+ AQ S W TLTGDPP V+ARGGFSG+FPDSS AY+ ++TS
Sbjct: 13 CGVILIQLLAAQIHAQSKKPKSPWPTLTGDPPLVIARGGFSGLFPDSSYDAYNFAILTSV 72
Query: 121 PSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLN 180
P +LWCDVQLTKD GICFPDL + N+S+I ++ T+QK+Y VNGVPT GWF+ID++L
Sbjct: 73 PDAVLWCDVQLTKDALGICFPDLTMRNSSSIEAVYPTRQKSYPVNGVPTSGWFTIDFSLK 132
Query: 181 DLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNXXXXXX 240
DL ++ L +G+ SR++KFDGN I+TVQ ++ Q+KP WLN+QHDAFYAQHN
Sbjct: 133 DLKDVNLIRGILSRSEKFDGNSNPIMTVQSVSTQMKPSFFWLNVQHDAFYAQHNLSMSSF 192
Query: 241 XXXXXXXXXXNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNL 300
++ISSPEVNF + IA RF + LVFRFLG+ E EPTTN+TYGS+L NL
Sbjct: 193 LVAASKTVLIDFISSPEVNFFKKIAGRFGRNGPSLVFRFLGQDEFEPTTNRTYGSILSNL 252
Query: 301 TFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSY 360
TF+KTFASGILVPK YI P+D+ YLLPHT++V DAHK LEVF S FANDI I+ +YS+
Sbjct: 253 TFVKTFASGILVPKSYILPLDDQQYLLPHTSLVQDAHKAGLEVFVSGFANDIDIAHDYSF 312
Query: 361 DPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDY 420
DP++EYLSF+DNG+FSVDGVLSDFP+T SA++DCF+H+G+NA+K + LVI+K+GASGDY
Sbjct: 313 DPVSEYLSFVDNGNFSVDGVLSDFPITASASLDCFSHVGRNATKQVDFLVITKDGASGDY 372
Query: 421 PSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEI 480
P CT+LAY+KAI DG D IDC VQ+S DG PFCLS I+L NST + + F + +TT+PE+
Sbjct: 373 PGCTDLAYKKAIKDGADVIDCSVQLSSDGTPFCLSSIDLGNSTTVSLTAFRNRSTTVPEL 432
Query: 481 MAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSL 540
+ I++FSL W EIQTL P ISNPY LFRNPK KNAGK LSDFL +AKN+ SL
Sbjct: 433 GSLGAIYTFSLTWAEIQTLTPAISNPYRVTSLFRNPKQKNAGKLFSLSDFLSLAKNSTSL 492
Query: 541 SGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTS 600
SGVLIS+ENA YL E+QG+ V +V++ L GY+ TA KVMIQST+SSVL+ ++++
Sbjct: 493 SGVLISVENAAYLREEQGLDVVKAVLDTLTQTGYSNSTATKVMIQSTNSSVLVDFKKQSQ 552
Query: 601 YELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLP 660
YE VYKV+ENIRD L+ IEDIKKFAD+VV+ K SV+P+ +FIT+ T++V++LQ +LP
Sbjct: 553 YETVYKVEENIRDILDSAIEDIKKFADAVVIQKLSVFPVAQSFITTQTNVVEKLQKSQLP 612
Query: 661 VYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRRNRCLKRGDKT 720
VYVE F NEF+SQ +DFF+D TVEIN+Y GAGI+G ITEFP TAARY+RN CL R + T
Sbjct: 613 VYVELFQNEFLSQPYDFFADATVEINSYITGAGINGTITEFPFTAARYKRNLCLGRKE-T 671
Query: 721 PPYMNPVQPGGLLPLITSDYLPPAEAPNPI 750
PYM P QPG LL L++ PPAEAPNP+
Sbjct: 672 IPYMAPAQPGALLTLVSPTAFPPAEAPNPV 701
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| TAIR|locus:2173977 SVL1 "SHV3-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2213 (784.1 bits), Expect = 2.3e-229, P = 2.3e-229
Identities = 417/681 (61%), Positives = 516/681 (75%)
Query: 72 QVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQL 131
Q+ AQ S S WQTLTGD P V+ARGGFSG+ PDSS AYS TS P +LWCDVQL
Sbjct: 32 QLFAQRSK--SPWQTLTGDAPLVIARGGFSGLLPDSSLDAYSFVSQTSVPGAVLWCDVQL 89
Query: 132 TKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGV 191
TKD G+CFPD+K+ NASNI ++ ++ +YL+NGVPT WF+ID+ DL+ +IL QG+
Sbjct: 90 TKDAIGLCFPDVKMMNASNIQDVYPKRKTSYLLNGVPTQDWFTIDFNFKDLTKVILKQGI 149
Query: 192 YSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNXXXXXXXXXXXXXXXXN 251
SR+ FDGN + I TV+D++ Q+KP G WLN+QHDAFYAQHN +
Sbjct: 150 LSRSAAFDGNSYGISTVKDISTQLKPEGFWLNVQHDAFYAQHNLSMSSFLLSISKTVIID 209
Query: 252 YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGIL 311
Y+SSPEVNF R+I RF + K VFRFL K ++E +TNQTYGSL NLTF+KTFASG+L
Sbjct: 210 YLSSPEVNFFRNIGRRFGRNGPKFVFRFLEKDDVEVSTNQTYGSLAGNLTFLKTFASGVL 269
Query: 312 VPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFID 371
VPK YIWP+ ES YLLP T+ V DAHK LEV+AS F ND +++NYS+DPL EYLSF+D
Sbjct: 270 VPKSYIWPI-ESQYLLPRTSFVQDAHKAGLEVYASGFGNDFDLAYNYSFDPLAEYLSFMD 328
Query: 372 NGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKA 431
NGDFSVDG+LSDFPLT S+AVDCF+HLG NAS + LVISKNGASGDYP CT+LAY KA
Sbjct: 329 NGDFSVDGLLSDFPLTASSAVDCFSHLGSNASSQVDFLVISKNGASGDYPGCTDLAYTKA 388
Query: 432 ISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSL 491
I DG D IDC +QMS DG+PFCLS INL STN QS F + +TT+PEI + GI+SFSL
Sbjct: 389 IKDGADVIDCSLQMSSDGIPFCLSSINLGESTNVVQSPFRNRSTTVPEIGSLPGIYSFSL 448
Query: 492 IWDEIQTLIPQISNPYFK-FKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENA 550
W EIQTL P I NPY + F +FRNP+ +++GKF+ LSDFL +AKN++SL+GVLIS+ENA
Sbjct: 449 AWSEIQTLRPAIENPYSREFTMFRNPRERSSGKFVSLSDFLNLAKNSSSLTGVLISVENA 508
Query: 551 VYLAEKQGMSVTNSVMEALGNAGY-NKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKE 609
YL EKQG+ +V++ L AGY NK T +VMIQST+SSVL+ ++++ YE VYKV+E
Sbjct: 509 TYLREKQGLDAVKAVLDTLTEAGYSNKTTTTRVMIQSTNSSVLIDFKKQSRYETVYKVEE 568
Query: 610 NIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNE 669
IRD L+ IEDIKKFAD+VV+SK+SV+P + +F T T +V+RLQ F+LPVYVE F NE
Sbjct: 569 TIRDILDTAIEDIKKFADAVVISKKSVFPTSESFTTGQTKLVERLQKFQLPVYVEVFRNE 628
Query: 670 FVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRRNRCLKRGDKTPPYMNPVQP 729
FVSQ WDFF+D TVEIN++ GAGI+G ITEFP+TAARY+RN CL R D PPYM PVQP
Sbjct: 629 FVSQPWDFFADATVEINSHVTGAGINGTITEFPLTAARYKRNSCLTRKD-VPPYMIPVQP 687
Query: 730 GGLLPLITSDYLPPAEAPNPI 750
GLL +++ LPPAEAP+P+
Sbjct: 688 AGLLTIVSPASLPPAEAPSPV 708
|
|
| TAIR|locus:2085710 SVL3 "SHV3-like 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1751 (621.4 bits), Expect = 2.1e-180, P = 2.1e-180
Identities = 356/679 (52%), Positives = 467/679 (68%)
Query: 81 TSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICF 140
+S WQTL+G PP V+ARGGFSG+FPDSS AY L IT++P V+LWCD+QLTKD GICF
Sbjct: 22 SSSWQTLSGKPPAVIARGGFSGMFPDSSIQAYQLVNITTSPDVMLWCDLQLTKDGVGICF 81
Query: 141 PDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDG 200
P+LKLDN SN+ +I +Y FS+D+T +LS++ L QGV SR FD
Sbjct: 82 PNLKLDNGSNVIRI----DPHYKER-------FSVDFTWKELSDVKLAQGVVSRPYIFDD 130
Query: 201 NGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNXXXXXXXXXXXXXXXXNYISSPEVNF 260
IL ++++A+ + GLWLNIQ AFYA+HN N+ISSP ++F
Sbjct: 131 VS-SILAIEEVAK-LTASGLWLNIQDSAFYAKHNLSMRNSVVSLSRRLKVNFISSPGISF 188
Query: 261 LRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPV 320
L+S+ +P++TKL+FRFL + IEP TNQ+YGSL KNL++I+TF+SGILVPK YIWPV
Sbjct: 189 LKSMKNSVKPTVTKLIFRFLKQEHIEPFTNQSYGSLAKNLSYIRTFSSGILVPKSYIWPV 248
Query: 321 DESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGV 380
D +LYL PHT++V DAHKE L+VFAS FAND I++NYSYDP EYLSFIDNG+FSVDG
Sbjct: 249 DSALYLQPHTSLVTDAHKEGLQVFASEFANDFVIAYNYSYDPTAEYLSFIDNGNFSVDGF 308
Query: 381 LSDFPLTPSAAVDCFAHLG-KNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFI 439
LSDFP+TP A++CF+H+ K A + A + +ISKNGASGD+P CT+LAYQ+A SDG D +
Sbjct: 309 LSDFPVTPYRAINCFSHVDPKRAKEQAKITIISKNGASGDFPGCTDLAYQRAASDGADIL 368
Query: 440 DCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAG-SGIFSFSLIWDEIQT 498
DC VQMSKD +PFC+S +LINSTN ++ F ++++ + EI SGI++FSL +IQT
Sbjct: 369 DCNVQMSKDKIPFCMSSFDLINSTNVIETSFRNLSSVVSEINPRRSGIYTFSLTMSQIQT 428
Query: 499 LIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQG 558
L P ISN LFRNP+N AGKF+ LS+FL + +SL G+LI +ENA YL E QG
Sbjct: 429 LKPTISNLEKDSGLFRNPRNNKAGKFLTLSEFLFLPNRYSSLLGLLIEVENAAYLVEHQG 488
Query: 559 MSVTNSVMEALGNAG--YNKQTALKVMIQSTDSSVLMKLREKTSY---ELVYKVKENIRD 613
+SV ++V++ L A NK +A ++IQSTD SVLMK +EK ELVY+V +NIRD
Sbjct: 489 ISVVDAVLDELKRATTQQNKTSARTILIQSTDKSVLMKFKEKNKMNHDELVYRVDDNIRD 548
Query: 614 ALNQTIEDIKKFADSVVLSKESVYPLNSAFITSA-TDIVQRLQSFKLPVYVETFSNEFVS 672
+ I+DIK FA S+V+SK+SV+P I T+I +L+S L VYVE FSNE V+
Sbjct: 549 VADSAIKDIKNFAGSIVISKKSVFPYKGFIILEKETNIASKLKSNGLRVYVERFSNECVT 608
Query: 673 QAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRRNRCLKRGDKTPPYMNPVQPGGL 732
A+DF+ DPT+EI+++ IDG+IT+FP T ARYR+N+C G+ G L
Sbjct: 609 HAFDFYDDPTLEIDSFVRDVQIDGIITDFPATTARYRKNKCY--GE-----FGLTTTGEL 661
Query: 733 LPLITSDYLPPAEAPNPIL 751
+ LPPAEAP P L
Sbjct: 662 ITFANPMLLPPAEAPYPAL 680
|
|
| TAIR|locus:2161248 SVL5 "SHV3-like 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1639 (582.0 bits), Expect = 1.5e-168, P = 1.5e-168
Identities = 320/679 (47%), Positives = 438/679 (64%)
Query: 74 SAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTK 133
+A + +W TL G P VVARGGFSG+FP+SS+ A L + TS+P + + C++Q+TK
Sbjct: 23 AAAAAVPAKKWLTLNGQEPAVVARGGFSGLFPESSASANDLAIGTSSPGLTMLCNLQMTK 82
Query: 134 DEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDL-SNIILNQGVY 192
D G+C D+ LDNA+ I+ +F QK Y VNG GWF +DY + + +N+ L Q ++
Sbjct: 83 DGVGLCLSDIILDNATTISSVFPKAQKTYKVNGQDLKGWFVLDYDADTIFNNVTLVQNIF 142
Query: 193 SRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNXXXXXXXXXXXXXXXXNY 252
SR FDG + V+D+ KPP WL++Q+DAFY +H N
Sbjct: 143 SRPSIFDGQ-MSVSAVEDVLGT-KPPKFWLSVQYDAFYMEHKLSPAEYLRSLQFRGI-NV 199
Query: 253 ISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILV 312
ISSPE+ FL+SI + TKL+F F +EPTTN+ Y + +NL IK FASG+LV
Sbjct: 200 ISSPEIGFLKSIGMDAGRAKTKLIFEFKDPEAVEPTTNKKYSEIQQNLAAIKAFASGVLV 259
Query: 313 PKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDN 372
PKDYIWP+D + YL P TT V DAHK LEV+AS FAND+ SFNYSYDP EYL F+DN
Sbjct: 260 PKDYIWPIDSAKYLKPATTFVADAHKAGLEVYASGFANDLRTSFNYSYDPSAEYLQFVDN 319
Query: 373 GDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAI 432
G FSVDGV++DFP T S ++ CF+H N K+ + LVI+ NGASGDYP CT+LAYQKA+
Sbjct: 320 GQFSVDGVITDFPPTASQSITCFSHQNGNLPKAGHALVITHNGASGDYPGCTDLAYQKAV 379
Query: 433 SDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLI 492
DG D IDC VQMSKDG+ FC +L ST A + F S T++PEI +GIFSF L
Sbjct: 380 DDGADVIDCSVQMSKDGIAFCHDAADLTASTTA-MTIFMSRATSVPEIQPTNGIFSFDLT 438
Query: 493 WDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVY 552
W EIQ++ PQI NP+ RNP NKNAGKF+ L+DFL+ +K A +++GV+I+IENA Y
Sbjct: 439 WAEIQSVKPQIENPFTATGFQRNPANKNAGKFITLADFLDFSK-AKAVTGVMINIENAAY 497
Query: 553 LAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIR 612
LA K+G+ V ++V AL + +KQ+ KV+IQS DSSVL Y V + + I
Sbjct: 498 LASKKGLGVVDAVKSALAKSTLDKQSTQKVLIQSDDSSVLASFEAVPPYTRVLSIDKEIG 557
Query: 613 DALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVS 672
A ++++IKK+A++V L + S+ ++ +F T T++V+ + + VYV NE++S
Sbjct: 558 GAPKPSVDEIKKYAEAVNLLRTSLVTVSQSFTTGKTNVVEEMHKGNISVYVSVLRNEYIS 617
Query: 673 QAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRRNRCLKRGDKTPPYMNPVQPGGL 732
A+D+FSDPT+E+ T+ G+G+DGVITEFP TA RY ++ C + P + P + GGL
Sbjct: 618 VAFDYFSDPTIELATFISGSGVDGVITEFPATATRYLKSPCSDLNKEQPYAILPAEAGGL 677
Query: 733 LPLITSDYLPPAEAPNPIL 751
+ + + PPA APNP L
Sbjct: 678 VVVADKEAQPPASAPNPPL 696
|
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| TAIR|locus:2155816 SVL4 "SHV3-like 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1630 (578.8 bits), Expect = 1.4e-167, P = 1.4e-167
Identities = 331/690 (47%), Positives = 436/690 (63%)
Query: 66 HCGVIAQVSAQGSNAT--SRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSV 123
H V A + + A +W TL G P VVARGGFSG+FP+SS A L + TS+P
Sbjct: 13 HSSVAAPKTPAAAAAVPAKKWLTLNGQEPAVVARGGFSGLFPESSISANDLAIGTSSPGF 72
Query: 124 ILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLS 183
+ C++Q+TKD G+C D++LDNA+ I+ +F QK Y VNG GWF IDY + +
Sbjct: 73 TMLCNLQMTKDGVGLCLSDIRLDNATTISSVFPKAQKTYKVNGQDLKGWFVIDYDADTIF 132
Query: 184 N-IILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNXXXXXXXX 242
N + L Q ++SR FDG + V+D+ KPP WL++Q+DAFY +H
Sbjct: 133 NKVTLVQNIFSRPSIFDGQ-MSVSAVEDVLGT-KPPKFWLSVQYDAFYMEHKLSPAEYLR 190
Query: 243 XXXXXXXXNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTF 302
N ISSPE+ FL+SI + TKL+F F +EPTTN+ Y + +NL
Sbjct: 191 SLRFRGI-NVISSPEIGFLKSIGMDAGRAKTKLIFEFKDPEAVEPTTNKKYSEIQQNLAA 249
Query: 303 IKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDP 362
IK FASG+LVPKDYIWP+D + YL P TT V DAHK LEV+AS FAND+ SFNYSYDP
Sbjct: 250 IKAFASGVLVPKDYIWPIDSAKYLKPATTFVADAHKAGLEVYASGFANDLRTSFNYSYDP 309
Query: 363 LTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDYPS 422
EYL F+DNG FSVDGV++DFP T S ++ CF+H N K+ + LVI+ NGASGDYP
Sbjct: 310 SAEYLQFVDNGQFSVDGVITDFPPTASQSITCFSHQNGNLPKAGHALVITHNGASGDYPG 369
Query: 423 CTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMA 482
CT+LAYQKAI DG D IDC VQMSKDG+ FC +L ST A ++ F S T++PEI
Sbjct: 370 CTDLAYQKAIDDGADIIDCSVQMSKDGIAFCHDAADLSASTTA-RTTFMSRATSVPEIQP 428
Query: 483 GSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSG 542
+GIFSF L W EIQ++ PQI NP+ RNP NKNAGKF L+DFLE+ K A +++G
Sbjct: 429 TNGIFSFDLTWAEIQSVKPQIENPFTATGFQRNPANKNAGKFTTLADFLELGK-AKAVTG 487
Query: 543 VLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYE 602
VLI+I+NA YLA K+G+ V + V AL N+ +KQ+ KV+IQS DSSVL Y
Sbjct: 488 VLINIQNAAYLASKKGLGVVDVVKSALTNSTLDKQSTQKVLIQSDDSSVLSSFEAVPPYT 547
Query: 603 LVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVY 662
V + + I DA +IE+IKK AD+V L + S+ ++ +F T T++V+ + + VY
Sbjct: 548 RVLSIDKEIGDAPKTSIEEIKKHADAVNLLRTSLITVSQSFATGKTNVVEEMHKANISVY 607
Query: 663 VETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRRNRCLKRGDKTPP 722
V NE+++ A+D+FSDPT+E+ T+ G G+DGVITEFP TA RY R+ C +K P
Sbjct: 608 VSVLRNEYIAIAFDYFSDPTIELATFIAGRGVDGVITEFPATATRYLRSPCSDL-NKDQP 666
Query: 723 Y-MNPVQPGGLLPLITSDYLPPAEAPNPIL 751
Y + P G LL + + PA PNP L
Sbjct: 667 YAILPADAGALLTVADKEAQLPAIPPNPPL 696
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| TAIR|locus:2019642 GDPD5 "glycerophosphodiester phosphodiesterase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 157 (60.3 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 62/227 (27%), Positives = 100/227 (44%)
Query: 411 ISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKF 470
I+ G++G+ P T AY KAI +G DFI+ + SKDGV C L +TN A K
Sbjct: 47 IAHRGSNGEIPEETTAAYLKAIEEGTDFIETDILSSKDGVLICFHDCILDETTNVASHKE 106
Query: 471 NSITTTIPEIMAGS--GIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLS 528
+ ++ + G F+F E++ L +I Y FR+ + +
Sbjct: 107 FADRKRTYDVQGFNITGFFTFDFTLKELKQL--RIKQRY----AFRDQQYNGMYPIITFE 160
Query: 529 DFLEMAKNANSLSGVLISIENAVYLAEKQ----GMSVTNSVMEALGNAGY-----NKQTA 579
+FL +A++A + G+ I+N V + + G + V+E L GY +K+
Sbjct: 161 EFLTIARDAPRVVGIYPEIKNPVLMNQHVKWPGGKKFEDKVVETLKKYGYGGSYLSKKWL 220
Query: 580 LK-VMIQS---TDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDI 622
K + IQS T + L + L+ V +D NQT +I
Sbjct: 221 KKPLFIQSFAPTSLVYISNLTDSPKVLLIDDVTMPTQDT-NQTYAEI 266
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| TAIR|locus:2142823 GDPD6 "glycerophosphodiester phosphodiesterase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 156 (60.0 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 56/240 (23%), Positives = 110/240 (45%)
Query: 397 HLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSF 456
H K +++ ++ G++G+ P T AY +AI +G DFI+ + SKDGV C
Sbjct: 33 HATKKPLQTSRPYNLAHRGSNGELPEETAPAYMRAIEEGADFIETDILSSKDGVLICHHD 92
Query: 457 INLINSTNAAQSKFNSITTTIPEI--MAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFR 514
+NL ++T+ A K + E+ M +G F+ E++TL + P FR
Sbjct: 93 VNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLKELKTLGAKQRYP------FR 146
Query: 515 NPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEK----QGMSVTNSVMEALG 570
+ + + +++ +A +A + G+ I+N V++ ++ G + +E L
Sbjct: 147 DQQYNGKFPIITFDEYISIALDAPRVVGIYPEIKNPVFMNQQVKWADGKKFEDKFVETLK 206
Query: 571 NAGYN----KQTALK--VMIQSTDSSVLMKLREKTSYELVYKVKEN--IRDALNQTIEDI 622
GY + LK + IQS ++ L+ + T ++ + + + + N+T +I
Sbjct: 207 KYGYKGSYLSEDWLKQPIFIQSFAATSLVYISNMTDSPKLFLIDDVTILTEDTNKTYAEI 266
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SZ11 | GLPQ2_ARATH | 3, ., 1, ., 4, ., 4, 6 | 0.5994 | 0.9247 | 0.9881 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_LG_I002833 | hypothetical protein (724 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 811 | |||
| cd08603 | 299 | cd08603, GDPD_SHV3_repeat_1, Glycerophosphodiester | 1e-166 | |
| cd08604 | 300 | cd08604, GDPD_SHV3_repeat_2, Glycerophosphodiester | 1e-162 | |
| cd08571 | 302 | cd08571, GDPD_SHV3_plant, Glycerophosphodiester ph | 1e-128 | |
| cd08571 | 302 | cd08571, GDPD_SHV3_plant, Glycerophosphodiester ph | 1e-108 | |
| cd08602 | 309 | cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester | 4e-36 | |
| cd08559 | 296 | cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic g | 2e-35 | |
| cd08602 | 309 | cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester | 2e-33 | |
| cd08559 | 296 | cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic g | 2e-24 | |
| cd08603 | 299 | cd08603, GDPD_SHV3_repeat_1, Glycerophosphodiester | 5e-21 | |
| pfam03009 | 238 | pfam03009, GDPD, Glycerophosphoryl diester phospho | 5e-20 | |
| cd08600 | 318 | cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester p | 4e-17 | |
| cd08604 | 300 | cd08604, GDPD_SHV3_repeat_2, Glycerophosphodiester | 2e-16 | |
| COG0584 | 257 | COG0584, UgpQ, Glycerophosphoryl diester phosphodi | 2e-11 | |
| PRK11143 | 355 | PRK11143, glpQ, glycerophosphodiester phosphodiest | 1e-09 | |
| cd08600 | 318 | cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester p | 3e-09 | |
| cd08556 | 189 | cd08556, GDPD, Glycerophosphodiester phosphodieste | 7e-08 | |
| cd08601 | 256 | cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester p | 2e-07 | |
| cd08563 | 230 | cd08563, GDPD_TtGDE_like, Glycerophosphodiester ph | 1e-05 | |
| cd08570 | 234 | cd08570, GDPD_YPL206cp_fungi, Glycerophosphodieste | 2e-05 | |
| cd08610 | 316 | cd08610, GDPD_GDE6, Glycerophosphodiester phosphod | 2e-05 | |
| cd08581 | 229 | cd08581, GDPD_like_1, Glycerophosphodiester phosph | 4e-05 | |
| cd08582 | 233 | cd08582, GDPD_like_2, Glycerophosphodiester phosph | 1e-04 | |
| cd08580 | 263 | cd08580, GDPD_Rv2277c_like, Glycerophosphodiester | 4e-04 | |
| cd08574 | 252 | cd08574, GDPD_GDE_2_3_6, Glycerophosphodiester pho | 5e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.001 | |
| cd08566 | 240 | cd08566, GDPD_AtGDE_like, Glycerophosphodiester ph | 0.001 | |
| cd08562 | 229 | cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester p | 0.002 | |
| cd08575 | 264 | cd08575, GDPD_GDE4_like, Glycerophosphodiester pho | 0.002 | |
| COG0584 | 257 | COG0584, UgpQ, Glycerophosphoryl diester phosphodi | 0.003 |
| >gnl|CDD|176545 cd08603, GDPD_SHV3_repeat_1, Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Score = 481 bits (1241), Expect = e-166
Identities = 193/300 (64%), Positives = 235/300 (78%), Gaps = 1/300 (0%)
Query: 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI 151
P V+ARGGFSG+FPDSS AY +S+P V LWCD+QLTKD GIC PDL LDN++ I
Sbjct: 1 PLVIARGGFSGLFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTI 60
Query: 152 AQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDM 211
A+++ ++K Y VNGV T GWFS+D+TL +L + L QG++SRT FDG + I TV+D+
Sbjct: 61 ARVYPKRKKTYSVNGVSTKGWFSVDFTLAELQQVTLIQGIFSRTPIFDGQ-YPISTVEDV 119
Query: 212 ARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPS 271
KP GLWLN+QHDAFY QHNLSM S++LS+S++V V+YISSPEV FL+SI R +
Sbjct: 120 VTLAKPEGLWLNVQHDAFYQQHNLSMSSYLLSLSKTVKVDYISSPEVGFLKSIGGRVGRN 179
Query: 272 MTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTT 331
TKLVFRFL K ++EP+TNQTYGS+LKNLTFIKTFASGILVPK YIWPVD YL P T+
Sbjct: 180 GTKLVFRFLDKDDVEPSTNQTYGSILKNLTFIKTFASGILVPKSYIWPVDSDQYLQPATS 239
Query: 332 IVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAA 391
+V DAHK LEV+AS FAND IS+NYSYDP+ EYLSF+ NG+FSVDGVLSDFP+T S A
Sbjct: 240 LVQDAHKAGLEVYASGFANDFDISYNYSYDPVAEYLSFVGNGNFSVDGVLSDFPITASEA 299
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs, which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition, the two tandem repeats show low sequence similarity to each other, suggesting they have different biochemical function. Most of the members of this family are Arabidopsis-specific gene products. To date, SHV3 orthologues are only found in Physcomitrella patens. This family includes domain I, the first GDPD domain of SHV3 and SVLs. Length = 299 |
| >gnl|CDD|176546 cd08604, GDPD_SHV3_repeat_2, Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Score = 472 bits (1218), Expect = e-162
Identities = 197/300 (65%), Positives = 242/300 (80%), Gaps = 1/300 (0%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
L+IS NGASGDYP CT+LAYQKA+ DG D IDC VQMSKDGVPFCL INLINST A S
Sbjct: 2 LIISHNGASGDYPGCTDLAYQKAVKDGADVIDCSVQMSKDGVPFCLDSINLINSTTVATS 61
Query: 469 KFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLS 528
KF++ TT+PEI + SGIF+F L W EIQTL P ISNPY LFRNP NKNAGKF+ LS
Sbjct: 62 KFSNRATTVPEIGSTSGIFTFDLTWSEIQTLKPAISNPYSVTGLFRNPANKNAGKFLTLS 121
Query: 529 DFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD 588
DFL++AKN SLSGVLI++ENA YLAEK+G+ V ++V++AL NAGY+ QTA KV+IQSTD
Sbjct: 122 DFLDLAKN-KSLSGVLINVENAAYLAEKKGLDVVDAVLDALTNAGYDNQTAQKVLIQSTD 180
Query: 589 SSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648
SSVL +++ SYE VY V E IRDA + +IE+IKKFAD+VV+ + SV+P++++F+T T
Sbjct: 181 SSVLAAFKKQISYERVYVVDETIRDASDSSIEEIKKFADAVVIDRGSVFPVSTSFLTRQT 240
Query: 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARY 708
++V++LQS L VYVE NEFVS A+DFF+DPTVEIN+Y +GAG+DG ITEFP TAARY
Sbjct: 241 NVVEKLQSANLTVYVEVLRNEFVSLAFDFFADPTVEINSYVQGAGVDGFITEFPATAARY 300
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs, which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition, the two tandem repeats show low sequence similarity to each other, suggesting they have different biochemical function. Most of the members of this family are Arabidopsis-specific gene products. To date, SHV3 orthologues are only found in Physcomitrella patens. This CD includes domain II (the second GDPD domain of SHV3 and SVLs), which is necessary for SHV3 function. Length = 300 |
| >gnl|CDD|176513 cd08571, GDPD_SHV3_plant, Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Score = 384 bits (989), Expect = e-128
Identities = 152/305 (49%), Positives = 197/305 (64%), Gaps = 9/305 (2%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
LVI++ GASGDYP T+LAYQKAISDG D +DC VQ++KDGVP CL INL NST A
Sbjct: 2 LVIARGGASGDYPDSTDLAYQKAISDGADVLDCDVQLTKDGVPICLPSINLDNSTTIASV 61
Query: 469 KFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLS 528
T + E + SGIFSF L W EIQTL P ISNP+ FRNP+N NAGK + L
Sbjct: 62 FPKRKKTYVVEGQSTSGIFSFDLTWAEIQTLKPIISNPFSVL--FRNPRNDNAGKILTLE 119
Query: 529 DFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD 588
DFL +AK SLSGV I++ENA +LAE +G+ ++V+ +L AGY+ QTA KV I S D
Sbjct: 120 DFLTLAKP-KSLSGVWINVENAAFLAEHKGLLSVDAVLTSLSKAGYD-QTAKKVYISSPD 177
Query: 589 SSVLMKLREK---TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSA-FI 644
SSVL +++ V V + D L + +IKKFA V++ K ++P++S F+
Sbjct: 178 SSVLKSFKKRVGTKLVFRVLDVDDTEPDTLLSNLTEIKKFASGVLVPKSYIWPVDSDSFL 237
Query: 645 TSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTY-YEGAGIDGVITEFPM 703
T T +VQ L VYV F+NEFVS A+D+ +DPT+EI ++ G +DGVIT+FP
Sbjct: 238 TPQTSVVQDAHKAGLEVYVSGFANEFVSLAYDYSADPTLEILSFVGNGNSVDGVITDFPA 297
Query: 704 TAARY 708
TAAR
Sbjct: 298 TAARA 302
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs, which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition, the two tandem repeats show low sequence similarity to each other, suggesting they have different biochemical function. Most members of this family are Arabidopsis-specific gene products. To date, SHV3 orthologues are only found in Physcomitrella patens. Length = 302 |
| >gnl|CDD|176513 cd08571, GDPD_SHV3_plant, Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Score = 334 bits (858), Expect = e-108
Identities = 134/314 (42%), Positives = 186/314 (59%), Gaps = 26/314 (8%)
Query: 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI 151
P V+ARGG SG +PDS+ +AY + A +L CDVQLTKD IC P + LDN++ I
Sbjct: 1 PLVIARGGASGDYPDSTDLAYQKAISDGA--DVLDCDVQLTKDGVPICLPSINLDNSTTI 58
Query: 152 AQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSR---TDKFDGNGFQILTV 208
A +F ++K Y+V G T G FS D T ++ + + + N +ILT+
Sbjct: 59 ASVFPKRKKTYVVEGQSTSGIFSFDLTWAEIQTLKPIISNPFSVLFRNPRNDNAGKILTL 118
Query: 209 QDMARQIKP---PGLWLNIQHDAFYAQH--NLSMRSFVLSVSR-----SVVVNYISSPEV 258
+D KP G+W+N+++ AF A+H LS+ + + S+S+ + YISSP+
Sbjct: 119 EDFLTLAKPKSLSGVWINVENAAFLAEHKGLLSVDAVLTSLSKAGYDQTAKKVYISSPDS 178
Query: 259 NFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIW 318
+ L+S R TKLVFR L + EP T LL NLT IK FASG+LVPK YIW
Sbjct: 179 SVLKSFKKRVG---TKLVFRVLDVDDTEPDT------LLSNLTEIKKFASGVLVPKSYIW 229
Query: 319 PVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLSFIDNGDFSV 377
PVD +L P T++V DAHK LEV+ S FAN+ + ++++YS DP E LSF+ NG SV
Sbjct: 230 PVDSDSFLTPQTSVVQDAHKAGLEVYVSGFANEFVSLAYDYSADPTLEILSFVGNG-NSV 288
Query: 378 DGVLSDFPLTPSAA 391
DGV++DFP T + A
Sbjct: 289 DGVITDFPATAARA 302
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs, which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition, the two tandem repeats show low sequence similarity to each other, suggesting they have different biochemical function. Most members of this family are Arabidopsis-specific gene products. To date, SHV3 orthologues are only found in Physcomitrella patens. Length = 302 |
| >gnl|CDD|176544 cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 4e-36
Identities = 88/316 (27%), Positives = 143/316 (45%), Gaps = 30/316 (9%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
LVI+ GASG P T AYQ AI G DFI+ + +KDGV C L +T+ A
Sbjct: 2 LVIAHRGASGYRPEHTLAAYQLAIEQGADFIEPDLVSTKDGVLICRHEPELSGTTDVADH 61
Query: 469 K--FNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMK 526
+ TT + + +G F+ E++TL + PY R+
Sbjct: 62 PEFADRKTTKTVDGVNVTGWFTEDFTLAELKTLRARQRLPY------RDQSYDGQFPIPT 115
Query: 527 LSDFLEMAKNANSLS----GVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKV 582
+ + +AK A++ + G+ I++ Y G+ + + ++E L GY + A V
Sbjct: 116 FEEIIALAKAASAATGRTVGIYPEIKHPTYFNAPLGLPMEDKLLETLKKYGYTGKKA-PV 174
Query: 583 MIQSTDSSVLMKLREKTSYELVY---KVKENIRDAL---NQT---------IEDIKKFAD 627
IQS + + L LR KT LV +D ++T +++I +AD
Sbjct: 175 FIQSFEVTNLKYLRNKTDLPLVQLIDDATIPPQDTPEGDSRTYADLTTDAGLKEIATYAD 234
Query: 628 SVVLSKESVYPLNSA-FITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEIN 686
+ K+ + P ++ + + TD+V+ + L V+ TF NE DFF DP E
Sbjct: 235 GIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVHPYTFRNENTFLPPDFFGDPYAEYR 294
Query: 687 TYYEGAGIDGVITEFP 702
+ + AG+DG+ T+FP
Sbjct: 295 AFLD-AGVDGLFTDFP 309
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively. Length = 309 |
| >gnl|CDD|176502 cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 2e-35
Identities = 83/311 (26%), Positives = 132/311 (42%), Gaps = 33/311 (10%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
LVI+ GASG P T AY AI G D+I+ + M+KDGV L +TN A+
Sbjct: 2 LVIAHRGASGYAPEHTLAAYALAIEMGADYIEQDLVMTKDGVLVARHDPTLDRTTNVAEH 61
Query: 469 KFNSITTTIPEI-MAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKL 527
P +G F E++TL + + + + R P K L
Sbjct: 62 F--------PFRGRKDTGYFVIDFTLAELKTL--RAGSWFNQRYPERAPSYYGGFKIPTL 111
Query: 528 SDFLEMAKNANSLS----GVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVM 583
+ +E+A+ N + G+ ++ + ++G + ++E L GY + V
Sbjct: 112 EEVIELAQGLNKSTGRNVGIYPETKHPTFHK-QEGPDIEEKLLEVLKKYGYTGKND-PVF 169
Query: 584 IQSTDSSVLMKLREKT-SYELVYKVKEN-IRDALNQT----------IEDIKKFADSVVL 631
IQS + L +LR +T LV + + + +++I K+AD +
Sbjct: 170 IQSFEPESLKRLRNETPDIPLVQLIDYGDWAETDKKYTYAWLTTDAGLKEIAKYADGIGP 229
Query: 632 SKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEG 691
K + P +S + TD+V+ L V+ TF NE + A DF D N
Sbjct: 230 WKSLIIPEDSNGLLVPTDLVKDAHKAGLLVHPYTFRNENLFLAPDFKQDMDALYNA---- 285
Query: 692 AGIDGVITEFP 702
AG+DGV T+FP
Sbjct: 286 AGVDGVFTDFP 296
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), to the corresponding alcohols and G3P, which is subsequently transported into the cell through the GlpT transport system. Ca2+ is required for GlpQ enzymatic activity. This subfamily also includes some GP-GDEs in higher plants and their eukaryotic homologs, which show very high sequence similarities with bacterial periplasmic GP-GDEs. Length = 296 |
| >gnl|CDD|176544 cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 2e-33
Identities = 91/322 (28%), Positives = 141/322 (43%), Gaps = 41/322 (12%)
Query: 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI 151
P V+A G SG P+ + AY L + A + D+ TKD IC + +L +++
Sbjct: 1 PLVIAHRGASGYRPEHTLAAYQLAIEQGAD--FIEPDLVSTKDGVLICRHEPELSGTTDV 58
Query: 152 AQI--FKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQ 209
A F ++ V+GV GWF+ D+TL +L + Q + R +DG F I T +
Sbjct: 59 ADHPEFADRKTTKTVDGVNVTGWFTEDFTLAELKTLRARQRLPYRDQSYDGQ-FPIPTFE 117
Query: 210 DM--------ARQIKPPGLWLNIQHDAFYAQH-NLSMRSFVLSV--------SRSVVVNY 252
++ A + G++ I+H ++ L M +L ++ V +
Sbjct: 118 EIIALAKAASAATGRTVGIYPEIKHPTYFNAPLGLPMEDKLLETLKKYGYTGKKAPV--F 175
Query: 253 ISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPT------TNQTYGSLL--KNLTFIK 304
I S EV L+ + + T L L P ++TY L L I
Sbjct: 176 IQSFEVTNLKYLR-----NKTDLPLVQLIDDATIPPQDTPEGDSRTYADLTTDAGLKEIA 230
Query: 305 TFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAN-DIPISFNYSYDPL 363
T+A GI KD I P D + L T +V DAH L+V F N + + ++ DP
Sbjct: 231 TYADGIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVHPYTFRNENTFLPPDFFGDPY 290
Query: 364 TEYLSFIDNGDFSVDGVLSDFP 385
EY +F+D G VDG+ +DFP
Sbjct: 291 AEYRAFLDAG---VDGLFTDFP 309
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively. Length = 309 |
| >gnl|CDD|176502 cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-24
Identities = 84/317 (26%), Positives = 126/317 (39%), Gaps = 44/317 (13%)
Query: 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI 151
P V+A G SG P+ + AY+L + A + D+ +TKD + D LD +N+
Sbjct: 1 PLVIAHRGASGYAPEHTLAAYALAIEMGAD--YIEQDLVMTKDGVLVARHDPTLDRTTNV 58
Query: 152 AQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLS----NIILNQGVYSRTDKFDGNGFQILT 207
A+ F + G G+F ID+TL +L NQ R + G F+I T
Sbjct: 59 AEHFPFR-------GRKDTGYFVIDFTLAELKTLRAGSWFNQRYPERAPSYYGG-FKIPT 110
Query: 208 VQD--------MARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSV--------SRSVVVN 251
+++ + G++ +H F+ Q + +L V V
Sbjct: 111 LEEVIELAQGLNKSTGRNVGIYPETKHPTFHKQEGPDIEEKLLEVLKKYGYTGKNDPV-- 168
Query: 252 YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLL--KNLTFIKTFASG 309
+I S E L+ + P + LV E TY L L I +A G
Sbjct: 169 FIQSFEPESLKRLRNET-PDI-PLVQLIDYGDWAETDKKYTYAWLTTDAGLKEIAKYADG 226
Query: 310 ILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLS 368
I K I P D + LL T +V DAHK L V F N+ + ++ ++ D Y
Sbjct: 227 IGPWKSLIIPEDSN-GLLVPTDLVKDAHKAGLLVHPYTFRNENLFLAPDFKQDMDALYN- 284
Query: 369 FIDNGDFSVDGVLSDFP 385
VDGV +DFP
Sbjct: 285 -----AAGVDGVFTDFP 296
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), to the corresponding alcohols and G3P, which is subsequently transported into the cell through the GlpT transport system. Ca2+ is required for GlpQ enzymatic activity. This subfamily also includes some GP-GDEs in higher plants and their eukaryotic homologs, which show very high sequence similarities with bacterial periplasmic GP-GDEs. Length = 296 |
| >gnl|CDD|176545 cd08603, GDPD_SHV3_repeat_1, Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 5e-21
Identities = 80/320 (25%), Positives = 146/320 (45%), Gaps = 44/320 (13%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGV-DF-IDCPVQMSKDGVPFCLSFINLINSTNAA 466
LVI++ G SG +P + AYQ A S D + C +Q++KDGV CL +NL NST A
Sbjct: 2 LVIARGGFSGLFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTIA 61
Query: 467 QSKFNSITTTIPEIMAGSGIFSFSLIWDEIQ--TLIPQISN--PYFKFKLFRNPKNKNAG 522
+ T ++ G FS E+Q TLI I + P F +
Sbjct: 62 RVYPKRKKTYSVNGVSTKGWFSVDFTLAELQQVTLIQGIFSRTPIFDGQ----------- 110
Query: 523 KFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKV 582
+S ++ A G+ +++++ + + +S+++ ++ +K +
Sbjct: 111 --YPISTVEDVVTLAKP-EGLWLNVQHDAFYQQ-HNLSMSSYLL------SLSKTVKVDY 160
Query: 583 MIQSTDSSVLMKL-----REKTSYELVYKVKENIRDALNQT-------IEDIKKFADSVV 630
I S + L + R T + K+++ + NQT + IK FA ++
Sbjct: 161 -ISSPEVGFLKSIGGRVGRNGTKLVFRFLDKDDVEPSTNQTYGSILKNLTFIKTFASGIL 219
Query: 631 LSKESVYPLNSA-FITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYY 689
+ K ++P++S ++ AT +VQ L VY F+N+F ++++ DP E ++
Sbjct: 220 VPKSYIWPVDSDQYLQPATSLVQDAHKAGLEVYASGFANDFDI-SYNYSYDPVAEYLSFV 278
Query: 690 EGAG--IDGVITEFPMTAAR 707
+DGV+++FP+TA+
Sbjct: 279 GNGNFSVDGVLSDFPITASE 298
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs, which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition, the two tandem repeats show low sequence similarity to each other, suggesting they have different biochemical function. Most of the members of this family are Arabidopsis-specific gene products. To date, SHV3 orthologues are only found in Physcomitrella patens. This family includes domain I, the first GDPD domain of SHV3 and SVLs. Length = 299 |
| >gnl|CDD|217317 pfam03009, GDPD, Glycerophosphoryl diester phosphodiesterase family | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 5e-20
Identities = 66/294 (22%), Positives = 101/294 (34%), Gaps = 66/294 (22%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSIT 474
GASGDYP T LA++KA G D+I+ VQ++KDGVP + L +T+ A
Sbjct: 3 GASGDYPENTLLAFRKAAEAGADYIEFDVQLTKDGVPVVMHDFTLDRTTDGAG------- 55
Query: 475 TTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMA 534
L +E++ L + F R P L + LE
Sbjct: 56 ------------RVKDLTLEELKKLDA-GAGNSPPFSGERVP--------PTLEEVLERW 94
Query: 535 KNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAG---YNKQTALKVMIQSTDSSV 591
++ + I ++V + A K +V+ S +
Sbjct: 95 DVGLNI-EIKIKQTPEA-------IAVEELGIVKDLLASVDEILKVDPRRVIFSSFNPDA 146
Query: 592 LMKLREK-TSYELV--YKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648
L +LRE + LV + D L + A +L S+
Sbjct: 147 LQRLRELAPTLPLVFLTSGRAPALDPLERAAAAAGAPA---LLGGVSLVDEAL------- 196
Query: 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702
V+R + L V+V T +NE G+DGVIT+ P
Sbjct: 197 VDVKRAHARGLKVHVWTVNNEDD--------------MKRLLKLGVDGVITDRP 236
|
E. coli has two sequence related isozymes of glycerophosphoryl diester phosphodiesterase (GDPD) - periplasmic and cytosolic. This family also includes agrocinopine synthase, the similarity to GDPD has been noted. This family appears to have weak but not significant matches to mammalian phospholipase C pfam00388, which suggests that this family may adopt a TIM barrel fold. Length = 238 |
| >gnl|CDD|176542 cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 4e-17
Identities = 73/336 (21%), Positives = 138/336 (41%), Gaps = 62/336 (18%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
++I+ GASG P T A A + G D+++ V ++KD + L N TN A+
Sbjct: 2 IIIAHRGASGYLPEHTLEAKALAYAQGADYLEQDVVLTKDDKLVVIHDHYLDNVTNVAE- 60
Query: 469 KFNSITTTIPEIMAGSGIFSFSLI---WDEIQTLIPQISNPYF-----KFKLFRN--PKN 518
KF P+ G + +I DE+++L ++ + K +++ N P
Sbjct: 61 KF-------PDRKRKDG--RYYVIDFTLDELKSL--SVTERFDIENGKKVQVYPNRFPLW 109
Query: 519 KNAGKFMKLSDFLEMAKNANSLSG--VLISIE-NAVYLAEKQGMSVTNSVMEALGNAGYN 575
K+ K L + +E+ + N +G V I E A + ++G + + +E L GY
Sbjct: 110 KSDFKIHTLEEEIELIQGLNKSTGKNVGIYPEIKAPWFHHQEGKDIAAATLEVLKKYGYT 169
Query: 576 KQTALKVMIQSTDSSVLMKLREKTSYELVYKVK-------------ENIRDALNQT---- 618
+ KV +Q+ D + L +++ + ++ +K +
Sbjct: 170 SKND-KVYLQTFDPNELKRIKNELLPKMGMDLKLVQLIAYTDWGETQEKDPGGWVNYDYD 228
Query: 619 -------IEDIKKFADSV-----VLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETF 666
+++I K+AD V ++ +E N TD+V+ L V+ T
Sbjct: 229 WMFTKGGLKEIAKYADGVGPWYSMIIEEKSSKGNIVL----TDLVKDAHEAGLEVHPYTV 284
Query: 667 SNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702
+ + + + D ++ AG+DGV T+FP
Sbjct: 285 RKDALPE---YAKDADQLLDALLNKAGVDGVFTDFP 317
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), to the corresponding alcohols and G3P, which is subsequently transported into the cell through the GlpT transport system. Ca2+ is required for the enzymatic activity of GlpQ. This family also includes a surface-exposed lipoprotein, protein D (HPD), from Haemophilus influenza Type b and nontypeable strains, which shows very high sequence similarity with E. coli GlpQ. HPD has been characterized as a human immunoglobulin D-binding protein with glycerophosphodiester phosphodiesterase activity. It can hydrolyze phosphatidylcholine from host membranes to produce free choline on the lipopolysaccharides on the surface of pathogenic bacteria. Length = 318 |
| >gnl|CDD|176546 cd08604, GDPD_SHV3_repeat_2, Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 2e-16
Identities = 70/315 (22%), Positives = 136/315 (43%), Gaps = 38/315 (12%)
Query: 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI 151
P +++ G SG +P + +AY + A ++ C VQ++KD C + L N++ +
Sbjct: 1 PLIISHNGASGDYPGCTDLAYQKAVKDGAD--VIDCSVQMSKDGVPFCLDSINLINSTTV 58
Query: 152 AQ-IFKTQQKNYLVNGVPTPGWFSIDYTLNDLSN---IILN---QGVYSRTDKFDGNGFQ 204
A F + G T G F+ D T +++ I N R G +
Sbjct: 59 ATSKFSNRATTVPEIG-STSGIFTFDLTWSEIQTLKPAISNPYSVTGLFRNPANKNAG-K 116
Query: 205 ILTVQD---MARQIKPPGLWLNIQHDAFYAQH-NLSMRSFVL-SVSRSVVVN------YI 253
LT+ D +A+ G+ +N+++ A+ A+ L + VL +++ + N I
Sbjct: 117 FLTLSDFLDLAKNKSLSGVLINVENAAYLAEKKGLDVVDAVLDALTNAGYDNQTAQKVLI 176
Query: 254 SSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVP 313
S + + L + + + V+ ++ T S ++ IK FA +++
Sbjct: 177 QSTDSSVLAAFKKQ---ISYERVYV------VDETIRDASDSSIEE---IKKFADAVVID 224
Query: 314 KDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLSFIDN 372
+ ++PV S +L T +V L V+ N+ + ++F++ DP E S++
Sbjct: 225 RGSVFPVSTS-FLTRQTNVVEKLQSANLTVYVEVLRNEFVSLAFDFFADPTVEINSYV-- 281
Query: 373 GDFSVDGVLSDFPLT 387
VDG +++FP T
Sbjct: 282 QGAGVDGFITEFPAT 296
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs, which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition, the two tandem repeats show low sequence similarity to each other, suggesting they have different biochemical function. Most of the members of this family are Arabidopsis-specific gene products. To date, SHV3 orthologues are only found in Physcomitrella patens. This CD includes domain II (the second GDPD domain of SHV3 and SVLs), which is necessary for SHV3 function. Length = 300 |
| >gnl|CDD|223657 COG0584, UgpQ, Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 2e-11
Identities = 64/318 (20%), Positives = 108/318 (33%), Gaps = 73/318 (22%)
Query: 405 SANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFC----LSFINLI 460
A L+I+ GASG P T A++ A G D+I+ VQ++KDGV
Sbjct: 3 LAMPLIIAHRGASGYAPENTLAAFELAAEQGADYIELDVQLTKDGVLVVIHDETLDRTTN 62
Query: 461 NSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKN 520
E++ L FR P
Sbjct: 63 GLGTVRDLT-----------------------LAELKRL---------DAGSFRIP---- 86
Query: 521 AGKFMKLSDFL-EMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTA 579
F + L E+ + G+ I I+ Q + +++ L Y A
Sbjct: 87 --TFGEEIPTLEELLEATGRKIGLYIEIK--SPGFHPQEGKILAALLALL--KRYGGTAA 140
Query: 580 L-KVMIQSTDSSVLMKLREKTS----YELVYKVKENIRDALNQTIEDIKKFADSVVLSKE 634
+V++ S D + L +++ L+ + L + ++++ +AD V
Sbjct: 141 DDRVILSSFDHAALKRIKRLAPDLPLGLLLDATDQYDWMELPRALKEVALYADGVGPDWA 200
Query: 635 SVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGI 694
+ L T++V + L V+V T + E I E AG+
Sbjct: 201 MLAEL-------LTELVDDAHAAGLKVHVWTVNEEDD-------------IRLLLE-AGV 239
Query: 695 DGVITEFPMTAARYRRNR 712
DG+IT+FP A + R
Sbjct: 240 DGLITDFPDLAVAFLNKR 257
|
Length = 257 |
| >gnl|CDD|236859 PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 87/364 (23%), Positives = 146/364 (40%), Gaps = 91/364 (25%)
Query: 402 ASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461
A+ SA +VI+ GASG P T A A + G D+++ + M+KD L L
Sbjct: 21 AADSAEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDQLVVLHDHYLDR 80
Query: 462 STNAAQSKFNSITTTIPEIMAGSGIF---SFSLIWDEIQTLIPQISNPYFKFKLFRNPKN 518
T+ A+ +F P+ G + F+L DEI++L KF + +N
Sbjct: 81 VTDVAE-RF-------PDRARKDGRYYAIDFTL--DEIKSL---------KFTEGFDIEN 121
Query: 519 KN-----AGKF-MKLSDF--------LEMAKNANSLSGVLISIE---NAVYLAEKQGMSV 561
G+F M SDF +E + N +G I I A + ++G +
Sbjct: 122 GKKVQVYPGRFPMGKSDFRVHTFEEEIEFIQGLNHSTGKNIGIYPEIKAPWFHHQEGKDI 181
Query: 562 TNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTI-- 619
V+E L GY + KV +Q D++ L +++ EL K+ +++ L Q I
Sbjct: 182 AAKVLEVLKKYGYTGKDD-KVYLQCFDANELKRIK----NELEPKMGMDLK--LVQLIAY 234
Query: 620 -----------------------------EDIKKFADSV------VLSKESVYPLNSAFI 644
+++ K+AD + ++ + S P N
Sbjct: 235 TDWNETQEKQPDGKWVNYNYDWMFKPGAMKEVAKYADGIGPDYHMLVDETST-PGNIKL- 292
Query: 645 TSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMT 704
T +V+ KL V+ T + Q ++ +D + Y AG+DGV T+FP
Sbjct: 293 ---TGMVKEAHQAKLVVHPYTVRAD---QLPEYATDVNQLYDILYNQAGVDGVFTDFPDK 346
Query: 705 AARY 708
A ++
Sbjct: 347 AVKF 350
|
Length = 355 |
| >gnl|CDD|176542 cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 78/330 (23%), Positives = 131/330 (39%), Gaps = 53/330 (16%)
Query: 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQ 153
++A G SG P+ + A +L A L DV LTKD+ + D LDN +N+A+
Sbjct: 3 IIAHRGASGYLPEHTLEAKALAYAQGAD--YLEQDVVLTKDDKLVVIHDHYLDNVTNVAE 60
Query: 154 IFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRT--------DKFDGN--GF 203
F +++ ++ ID+TL++L ++ + + ++F F
Sbjct: 61 KFPDRKR-------KDGRYYVIDFTLDELKSLSVTERFDIENGKKVQVYPNRFPLWKSDF 113
Query: 204 QILTVQDMARQI--------KPPGLWLNIQHDAFYAQHNLSMRSFVLSV-------SRSV 248
+I T+++ I K G++ I+ F+ Q + + L V S++
Sbjct: 114 KIHTLEEEIELIQGLNKSTGKNVGIYPEIKAPWFHHQEGKDIAAATLEVLKKYGYTSKND 173
Query: 249 VVNYISSPEVNFLRSIAARFRPSMT---KLVFRFLGKSEIEPT--------TNQTYGSLL 297
V Y+ + + N L+ I P M KLV + + ++ T N Y +
Sbjct: 174 KV-YLQTFDPNELKRIKNELLPKMGMDLKLV-QLIAYTDWGETQEKDPGGWVNYDYDWMF 231
Query: 298 K--NLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPIS 355
L I +A G+ I S + T +V DAH+ LEV D
Sbjct: 232 TKGGLKEIAKYADGVGPWYSMIIEEKSSKGNIVLTDLVKDAHEAGLEVHPYTVRKDALPE 291
Query: 356 FNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385
+ D L + L VDGV +DFP
Sbjct: 292 YAKDADQLLDALLN----KAGVDGVFTDFP 317
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), to the corresponding alcohols and G3P, which is subsequently transported into the cell through the GlpT transport system. Ca2+ is required for the enzymatic activity of GlpQ. This family also includes a surface-exposed lipoprotein, protein D (HPD), from Haemophilus influenza Type b and nontypeable strains, which shows very high sequence similarity with E. coli GlpQ. HPD has been characterized as a human immunoglobulin D-binding protein with glycerophosphodiester phosphodiesterase activity. It can hydrolyze phosphatidylcholine from host membranes to produce free choline on the lipopolysaccharides on the surface of pathogenic bacteria. Length = 318 |
| >gnl|CDD|176499 cd08556, GDPD, Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 7e-08
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL 454
+I+ GASG+ P T A++KA+ G D ++ VQ++KDGV +
Sbjct: 1 IIAHRGASGEAPENTLAAFRKALEAGADGVELDVQLTKDGVLVVI 45
|
The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols are major sources of carbon and phosphate. Its catalytic mechanism is based on the metal ion-dependent acid-base reaction, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). Both, GDPD related proteins and PI-PLCs, belong to the superfamily of PI-PLC-like phosphodiesterases. Length = 189 |
| >gnl|CDD|176543 cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 62/313 (19%), Positives = 101/313 (32%), Gaps = 83/313 (26%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
VI+ GASG P T AY A G D+I+ +QM+KDGV + L +TN +
Sbjct: 2 AVIAHRGASGYAPEHTFAAYDLAREMGADYIELDLQMTKDGVLVAMHDETLDRTTNIER- 60
Query: 469 KFNSITTTIPEIMAGSGIFSFSLIWDEIQTL---------IPQISNPYFKFKLFRNPKNK 519
G EI+ L P+ + +
Sbjct: 61 ---------------PGPVK-DYTLAEIKQLDAGSWFNKAYPEYARESY----------- 93
Query: 520 NAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEA-----LGNAGY 574
+ K L + +E Y+ K ME L G
Sbjct: 94 SGLKVPTLEEVIERYGG-----------RANYYIETKS--PDLYPGMEEKLLATLDKYGL 140
Query: 575 NKQTAL--KVMIQSTDSSVLMKLR-EKTSYELVYKVKE-NIRDALNQTIEDIKKFADSVV 630
+V+IQS L KL + LV + + ++ +++IK++A +
Sbjct: 141 LTDNLKNGQVIIQSFSKESLKKLHQLNPNIPLVQLLWYGEGAETYDKWLDEIKEYAIGI- 199
Query: 631 LSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYE 690
S+ + V + L V+ T + + +D IN
Sbjct: 200 --GPSIADADPWM-------VHLIHKKGLLVHPYTVNEK---------ADMIRLIN---- 237
Query: 691 GAGIDGVITEFPM 703
G+DG+ T +P
Sbjct: 238 -WGVDGMFTNYPD 249
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Length = 256 |
| >gnl|CDD|176506 cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVP 451
L+ + G SG P T LA++KAI G D I+ V ++KDG
Sbjct: 2 LIFAHRGYSGTAPENTLLAFKKAIEAGADGIELDVHLTKDGQL 44
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE. Length = 230 |
| >gnl|CDD|176512 cd08570, GDPD_YPL206cp_fungi, Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGV 450
VI G YP T LA++KA+ G D I+ V ++KDGV
Sbjct: 1 VIGHRGYKAKYPENTLLAFEKAVEAGADAIETDVHLTKDGV 41
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholipase C-type degradation mechanism. YPL206cp has been characterized as a PG-specific phospholipase C that selectively catalyzes the cleavage of PG, not glycerophosphoinositol (GPI) or glycerophosphocholine (GPC), to diacylglycerol (DAG) and glycerophosphate. Members in this family are distantly related to S. cerevisiae YPL110cp, which selectively hydrolyzes glycerophosphocholine (GPC), not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate, and has been characterized as a cytoplasmic GPC-specific phosphodiesterase. Length = 234 |
| >gnl|CDD|176552 cd08610, GDPD_GDE6, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 23/140 (16%)
Query: 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSK 469
+I GA P T ++++KAI G ++ V +S DGVPF + L
Sbjct: 25 IIGHRGAPMLAPENTMMSFEKAIEHGAHGLETDVTLSYDGVPFLMHDFTL---------- 74
Query: 470 FNSITTTIPEIMAGSGIFSFSLI-WDEIQTLIPQISNPYFKFKLFRNPK-----NKNAGK 523
TT I E+ S + + WD + TL + K + F N K +K +
Sbjct: 75 --KRTTNIGEVQPESACENPAFFNWDFLSTL--NAGKWFVKPRPFYNMKPLSEADKERAR 130
Query: 524 ---FMKLSDFLEMAKNANSL 540
KLS+FL +A+ N L
Sbjct: 131 NQSIPKLSNFLRLAEKENKL 150
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation. Length = 316 |
| >gnl|CDD|176523 cd08581, GDPD_like_1, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVP 451
G YP T + ++ A+ G F++ VQ+S DGVP
Sbjct: 6 GYPARYPENTLVGFRAAVDAGARFVEFDVQLSADGVP 42
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Length = 229 |
| >gnl|CDD|176524 cd08582, GDPD_like_2, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 58/299 (19%), Positives = 101/299 (33%), Gaps = 74/299 (24%)
Query: 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSK 469
VI+ GAS + P T A++ A G D I+ V+++KDG C+ L ++
Sbjct: 1 VIAHRGASAEAPENTLAAFELAWEQGADGIETDVRLTKDGELVCVHDPTLKRTSG----- 55
Query: 470 FNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSD 529
G G S L E++ L ++ K K L +
Sbjct: 56 -------------GDGAVS-DLTLAELRKL---------DIGSWKGESYKGE-KVPTLEE 91
Query: 530 FLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYN-KQTALKVMIQSTD 588
+L + + I I++ G +++ L +G +Q ++I S D
Sbjct: 92 YLAIVPKYG--KKLFIEIKHPRR-----GPEAEEELLKLLKESGLLPEQ----IVIISFD 140
Query: 589 SSVLMKLRE-----KTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAF 643
+ L ++RE +T + YK + ++ + L LN AF
Sbjct: 141 AEALKRVRELAPTLETLWLRNYK---SPKEDPRPLAKSGGAAG----LDLSYEKKLNPAF 193
Query: 644 ITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702
I + L+ L + V T + A G+D + T P
Sbjct: 194 I-------KALRDAGLKLNVWTVDDA--EDAKRLI------------ELGVDSITTNRP 231
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Length = 233 |
| >gnl|CDD|176522 cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVP 451
L+++ G + D P T LA KA+++G D I VQ+SKDGVP
Sbjct: 2 LIVAHRGGTADAPENTLLAISKALANGADAIWLTVQLSKDGVP 44
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated. Length = 263 |
| >gnl|CDD|176516 cd08574, GDPD_GDE_2_3_6, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 27/131 (20%)
Query: 421 PSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEI 480
P T ++++KA+ GV ++ V +S DGVPF + L +TN A F
Sbjct: 15 PENTLMSFEKALEHGVYGLETDVTISYDGVPFLMHDRTLRRTTNVA-DVFPERAHE---- 69
Query: 481 MAGSGIFSFSLIWDEIQTLIPQISN---------PYFKFKLFRNPKNKNAG--KFMKLSD 529
+ +F+ W ++Q L N P++ + AG L++
Sbjct: 70 --RASMFT----WTDLQQL-----NAGQWFLKDDPFWTASSLSESDREEAGNQSIPSLAE 118
Query: 530 FLEMAKNANSL 540
L +AK N
Sbjct: 119 LLRLAKKHNKS 129
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bone tissues and spleen. It selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol and functions as an inducer of osteoblast differentiation. Mammalian GDE6 is predominantly expressed in the spermatocytes of testis, and its specific physiological function has not been elucidated yet. Length = 252 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.001
Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 743 PAEAPNPILTEAAVTEPPLPPVTPVPSTSPSDGSDGSAAPATPPNGQP 790
PA P P T + PP PP TP+PS P PA PP QP
Sbjct: 412 PASVPTPAPTPVPASAPP-PPATPLPSAEP----GSDDGPAPPPERQP 454
|
Length = 3151 |
| >gnl|CDD|176509 cd08566, GDPD_AtGDE_like, Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 409 LVISKNGASGD-YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPF 452
LV++ G G P + A + AI G D ++ V+ +KDGV
Sbjct: 1 LVVAHRGGWGAGAPENSLAAIEAAIDLGADIVEIDVRRTKDGVLV 45
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function. Length = 240 |
| >gnl|CDD|176505 cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL 454
+I+ GAS P T A++ A GV +++ V++S DG +
Sbjct: 1 IIAHRGASSLAPENTLAAFRAAAELGVRWVEFDVKLSGDGTLVLI 45
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), can only be hydrolyzed by UgpQ during transport at the inner side of the cytoplasmic membrane to alcohols and G3P, which is a source of phosphate. In contrast to Ca2+-dependent periplasmic phosphodiesterase GlpQ, cytosolic phosphodiesterase UgpQ requires divalent cations, such as Mg2+, Co2+, or Mn2+, for its enzyme activity. Length = 229 |
| >gnl|CDD|176517 cd08575, GDPD_GDE4_like, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVP 451
L I+ G + ++P T A++ A+ +G D ++ VQ++KDG
Sbjct: 2 LHIAHRGGAAEFPENTIAAFRHAVKNGADMLELDVQLTKDGQV 44
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4. Length = 264 |
| >gnl|CDD|223657 COG0584, UgpQ, Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 87 LTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLD 146
T P ++A G SG P+++ A+ L A + DVQLTKD + D LD
Sbjct: 1 ATLAMPLIIAHRGASGYAPENTLAAFELAAEQGAD--YIELDVQLTKDGVLVVIHDETLD 58
Query: 147 NASN 150
+N
Sbjct: 59 RTTN 62
|
Length = 257 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 811 | |||
| cd08603 | 299 | GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodi | 100.0 | |
| cd08603 | 299 | GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodi | 100.0 | |
| cd08604 | 300 | GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodi | 100.0 | |
| cd08571 | 302 | GDPD_SHV3_plant Glycerophosphodiester phosphodiest | 100.0 | |
| cd08602 | 309 | GDPD_ScGlpQ1_like Glycerophosphodiester phosphodie | 100.0 | |
| cd08571 | 302 | GDPD_SHV3_plant Glycerophosphodiester phosphodiest | 100.0 | |
| cd08602 | 309 | GDPD_ScGlpQ1_like Glycerophosphodiester phosphodie | 100.0 | |
| cd08560 | 356 | GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodi | 100.0 | |
| cd08600 | 318 | GDPD_EcGlpQ_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08604 | 300 | GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodi | 100.0 | |
| PRK11143 | 355 | glpQ glycerophosphodiester phosphodiesterase; Prov | 100.0 | |
| cd08559 | 296 | GDPD_periplasmic_GlpQ_like Periplasmic glycerophos | 100.0 | |
| PRK11143 | 355 | glpQ glycerophosphodiester phosphodiesterase; Prov | 100.0 | |
| cd08560 | 356 | GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodi | 100.0 | |
| cd08600 | 318 | GDPD_EcGlpQ_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08559 | 296 | GDPD_periplasmic_GlpQ_like Periplasmic glycerophos | 100.0 | |
| cd08601 | 256 | GDPD_SaGlpQ_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08580 | 263 | GDPD_Rv2277c_like Glycerophosphodiester phosphodie | 100.0 | |
| cd08581 | 229 | GDPD_like_1 Glycerophosphodiester phosphodiesteras | 100.0 | |
| cd08612 | 300 | GDPD_GDE4 Glycerophosphodiester phosphodiesterase | 100.0 | |
| PRK09454 | 249 | ugpQ cytoplasmic glycerophosphodiester phosphodies | 100.0 | |
| cd08574 | 252 | GDPD_GDE_2_3_6 Glycerophosphodiester phosphodieste | 100.0 | |
| cd08562 | 229 | GDPD_EcUgpQ_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08565 | 235 | GDPD_pAtGDE_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08563 | 230 | GDPD_TtGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08568 | 226 | GDPD_TmGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08608 | 351 | GDPD_GDE2 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08579 | 220 | GDPD_memb_like Glycerophosphodiester phosphodieste | 100.0 | |
| cd08580 | 263 | GDPD_Rv2277c_like Glycerophosphodiester phosphodie | 100.0 | |
| cd08564 | 265 | GDPD_GsGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08575 | 264 | GDPD_GDE4_like Glycerophosphodiester phosphodieste | 100.0 | |
| cd08610 | 316 | GDPD_GDE6 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08582 | 233 | GDPD_like_2 Glycerophosphodiester phosphodiesteras | 100.0 | |
| cd08573 | 258 | GDPD_GDE1 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08601 | 256 | GDPD_SaGlpQ_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08609 | 315 | GDPD_GDE3 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08606 | 286 | GDPD_YPL110cp_fungi Glycerophosphodiester phosphod | 100.0 | |
| cd08572 | 293 | GDPD_GDE5_like Glycerophosphodiester phosphodieste | 100.0 | |
| cd08574 | 252 | GDPD_GDE_2_3_6 Glycerophosphodiester phosphodieste | 100.0 | |
| cd08570 | 234 | GDPD_YPL206cp_fungi Glycerophosphodiester phosphod | 100.0 | |
| cd08567 | 263 | GDPD_SpGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08607 | 290 | GDPD_GDE5 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08610 | 316 | GDPD_GDE6 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08561 | 249 | GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodieste | 100.0 | |
| cd08612 | 300 | GDPD_GDE4 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08566 | 240 | GDPD_AtGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08609 | 315 | GDPD_GDE3 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08605 | 282 | GDPD_GDE5_like_1_plant Glycerophosphodiester phosp | 100.0 | |
| cd08581 | 229 | GDPD_like_1 Glycerophosphodiester phosphodiesteras | 100.0 | |
| PRK09454 | 249 | ugpQ cytoplasmic glycerophosphodiester phosphodies | 100.0 | |
| cd08608 | 351 | GDPD_GDE2 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08562 | 229 | GDPD_EcUgpQ_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08575 | 264 | GDPD_GDE4_like Glycerophosphodiester phosphodieste | 100.0 | |
| cd08565 | 235 | GDPD_pAtGDE_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08582 | 233 | GDPD_like_2 Glycerophosphodiester phosphodiesteras | 100.0 | |
| cd08563 | 230 | GDPD_TtGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08568 | 226 | GDPD_TmGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08564 | 265 | GDPD_GsGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08579 | 220 | GDPD_memb_like Glycerophosphodiester phosphodieste | 100.0 | |
| cd08572 | 293 | GDPD_GDE5_like Glycerophosphodiester phosphodieste | 100.0 | |
| cd08573 | 258 | GDPD_GDE1 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08607 | 290 | GDPD_GDE5 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08561 | 249 | GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodieste | 100.0 | |
| cd08567 | 263 | GDPD_SpGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08585 | 237 | GDPD_like_3 Glycerophosphodiester phosphodiesteras | 100.0 | |
| cd08570 | 234 | GDPD_YPL206cp_fungi Glycerophosphodiester phosphod | 100.0 | |
| COG0584 | 257 | UgpQ Glycerophosphoryl diester phosphodiesterase [ | 100.0 | |
| cd08583 | 237 | PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetic | 100.0 | |
| cd08606 | 286 | GDPD_YPL110cp_fungi Glycerophosphodiester phosphod | 100.0 | |
| cd08566 | 240 | GDPD_AtGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| PF03009 | 256 | GDPD: Glycerophosphoryl diester phosphodiesterase | 100.0 | |
| cd08605 | 282 | GDPD_GDE5_like_1_plant Glycerophosphodiester phosp | 100.0 | |
| KOG2258 | 341 | consensus Glycerophosphoryl diester phosphodiester | 100.0 | |
| cd08613 | 309 | GDPD_GDE4_like_1 Glycerophosphodiester phosphodies | 100.0 | |
| cd08613 | 309 | GDPD_GDE4_like_1 Glycerophosphodiester phosphodies | 100.0 | |
| COG0584 | 257 | UgpQ Glycerophosphoryl diester phosphodiesterase [ | 100.0 | |
| cd08585 | 237 | GDPD_like_3 Glycerophosphodiester phosphodiesteras | 100.0 | |
| cd08583 | 237 | PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetic | 100.0 | |
| PF03009 | 256 | GDPD: Glycerophosphoryl diester phosphodiesterase | 100.0 | |
| cd08556 | 189 | GDPD Glycerophosphodiester phosphodiesterase domai | 100.0 | |
| cd08556 | 189 | GDPD Glycerophosphodiester phosphodiesterase domai | 99.97 | |
| cd08555 | 179 | PI-PLCc_GDPD_SF Catalytic domain of phosphoinositi | 99.96 | |
| cd08555 | 179 | PI-PLCc_GDPD_SF Catalytic domain of phosphoinositi | 99.95 | |
| cd08578 | 300 | GDPD_NUC-2_fungi Putative glycerophosphodiester ph | 99.93 | |
| cd08578 | 300 | GDPD_NUC-2_fungi Putative glycerophosphodiester ph | 99.87 | |
| KOG2258 | 341 | consensus Glycerophosphoryl diester phosphodiester | 99.84 | |
| cd08584 | 192 | PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetic | 99.8 | |
| cd08584 | 192 | PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetic | 99.76 | |
| cd08577 | 228 | PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetic | 99.21 | |
| cd08576 | 265 | GDPD_like_SMaseD_PLD Glycerophosphodiester phospho | 99.18 | |
| cd08577 | 228 | PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetic | 99.03 | |
| cd08576 | 265 | GDPD_like_SMaseD_PLD Glycerophosphodiester phospho | 98.97 | |
| PF13653 | 30 | GDPD_2: Glycerophosphoryl diester phosphodiesteras | 98.07 | |
| PF13653 | 30 | GDPD_2: Glycerophosphoryl diester phosphodiesteras | 97.93 | |
| cd08592 | 229 | PI-PLCc_gamma Catalytic domain of metazoan phospho | 97.89 | |
| cd08627 | 229 | PI-PLCc_gamma1 Catalytic domain of metazoan phosph | 97.72 | |
| cd08592 | 229 | PI-PLCc_gamma Catalytic domain of metazoan phospho | 97.69 | |
| KOG2421 | 417 | consensus Predicted starch-binding protein [Genera | 97.57 | |
| cd08627 | 229 | PI-PLCc_gamma1 Catalytic domain of metazoan phosph | 97.5 | |
| cd08597 | 260 | PI-PLCc_PRIP_metazoa Catalytic domain of metazoan | 97.04 | |
| smart00148 | 135 | PLCXc Phospholipase C, catalytic domain (part); do | 96.82 | |
| KOG2421 | 417 | consensus Predicted starch-binding protein [Genera | 96.82 | |
| cd08597 | 260 | PI-PLCc_PRIP_metazoa Catalytic domain of metazoan | 96.73 | |
| smart00148 | 135 | PLCXc Phospholipase C, catalytic domain (part); do | 96.67 | |
| PF10223 | 244 | DUF2181: Uncharacterized conserved protein (DUF218 | 94.88 | |
| cd08594 | 227 | PI-PLCc_eta Catalytic domain of metazoan phosphoin | 94.64 | |
| cd08633 | 254 | PI-PLCc_eta2 Catalytic domain of metazoan phosphoi | 94.44 | |
| cd08599 | 228 | PI-PLCc_plant Catalytic domain of plant phosphatid | 94.3 | |
| cd08596 | 254 | PI-PLCc_epsilon Catalytic domain of metazoan phosp | 94.23 | |
| cd08632 | 253 | PI-PLCc_eta1 Catalytic domain of metazoan phosphoi | 94.21 | |
| cd08631 | 258 | PI-PLCc_delta4 Catalytic domain of metazoan phosph | 94.21 | |
| cd08595 | 257 | PI-PLCc_zeta Catalytic domain of metazoan phosphoi | 94.2 | |
| cd08558 | 226 | PI-PLCc_eukaryota Catalytic domain of eukaryotic p | 94.12 | |
| cd08594 | 227 | PI-PLCc_eta Catalytic domain of metazoan phosphoin | 94.03 | |
| cd08630 | 258 | PI-PLCc_delta3 Catalytic domain of metazoan phosph | 93.96 | |
| cd08629 | 258 | PI-PLCc_delta1 Catalytic domain of metazoan phosph | 93.83 | |
| cd08628 | 254 | PI-PLCc_gamma2 Catalytic domain of metazoan phosph | 93.78 | |
| cd08599 | 228 | PI-PLCc_plant Catalytic domain of plant phosphatid | 93.7 | |
| cd08593 | 257 | PI-PLCc_delta Catalytic domain of metazoan phospho | 93.66 | |
| cd08633 | 254 | PI-PLCc_eta2 Catalytic domain of metazoan phosphoi | 93.48 | |
| cd08598 | 231 | PI-PLC1c_yeast Catalytic domain of putative yeast | 93.46 | |
| cd08626 | 257 | PI-PLCc_beta4 Catalytic domain of metazoan phospho | 93.25 | |
| cd08628 | 254 | PI-PLCc_gamma2 Catalytic domain of metazoan phosph | 93.1 | |
| cd08632 | 253 | PI-PLCc_eta1 Catalytic domain of metazoan phosphoi | 93.07 | |
| cd08596 | 254 | PI-PLCc_epsilon Catalytic domain of metazoan phosp | 93.05 | |
| cd08595 | 257 | PI-PLCc_zeta Catalytic domain of metazoan phosphoi | 93.05 | |
| cd08558 | 226 | PI-PLCc_eukaryota Catalytic domain of eukaryotic p | 93.05 | |
| cd08631 | 258 | PI-PLCc_delta4 Catalytic domain of metazoan phosph | 92.96 | |
| cd08624 | 261 | PI-PLCc_beta2 Catalytic domain of metazoan phospho | 92.95 | |
| cd08623 | 258 | PI-PLCc_beta1 Catalytic domain of metazoan phospho | 92.76 | |
| cd08630 | 258 | PI-PLCc_delta3 Catalytic domain of metazoan phosph | 92.75 | |
| cd08629 | 258 | PI-PLCc_delta1 Catalytic domain of metazoan phosph | 92.56 | |
| cd08593 | 257 | PI-PLCc_delta Catalytic domain of metazoan phospho | 92.52 | |
| cd08598 | 231 | PI-PLC1c_yeast Catalytic domain of putative yeast | 92.33 | |
| cd08591 | 257 | PI-PLCc_beta Catalytic domain of metazoan phosphoi | 92.21 | |
| cd08626 | 257 | PI-PLCc_beta4 Catalytic domain of metazoan phospho | 92.18 | |
| PF10223 | 244 | DUF2181: Uncharacterized conserved protein (DUF218 | 91.59 | |
| cd08625 | 258 | PI-PLCc_beta3 Catalytic domain of metazoan phospho | 91.42 | |
| cd08624 | 261 | PI-PLCc_beta2 Catalytic domain of metazoan phospho | 91.4 | |
| cd08623 | 258 | PI-PLCc_beta1 Catalytic domain of metazoan phospho | 91.34 | |
| cd08591 | 257 | PI-PLCc_beta Catalytic domain of metazoan phosphoi | 90.89 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 90.79 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 90.67 | |
| cd08625 | 258 | PI-PLCc_beta3 Catalytic domain of metazoan phospho | 89.81 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 89.32 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 86.96 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 83.7 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 82.98 | |
| PLN02591 | 250 | tryptophan synthase | 82.7 | |
| COG1954 | 181 | GlpP Glycerol-3-phosphate responsive antiterminato | 82.55 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 82.31 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 81.97 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 81.1 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 80.2 |
| >cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-63 Score=529.52 Aligned_cols=299 Identities=65% Similarity=1.112 Sum_probs=278.9
Q ss_pred CEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCc
Q 003550 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (811)
Q Consensus 92 plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g 171 (811)
|+||||||+||.+||||++||+.|++.|+++.+||||||+||||++||+||.+|+|+||+.+.|++|++++.+||+...|
T Consensus 1 plVIAHRGasg~~PEnTl~Ay~~Ai~~Ga~~d~IE~DV~lTkDgvlVv~HD~~L~rtT~v~~~F~~r~~t~~idG~~~~g 80 (299)
T cd08603 1 PLVIARGGFSGLFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTIARVYPKRKKTYSVNGVSTKG 80 (299)
T ss_pred CeEEecCCCCCCCCcchHHHHHHHHHcCCCCCEEEEEeeECcCCcEEEeCCccccccCCCccccccccccccccccccCC
Confidence 68999999999999999999999999999533899999999999999999999999999999999999999999999999
Q ss_pred ccccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCCCceEEeeccchhhhhcCchHHHHHHHHhhhcCce
Q 003550 172 WFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVN 251 (811)
Q Consensus 172 ~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~~~ 251 (811)
|++.||||+||++|++.+.++.|++.|+| .++||||+|+|++++..++++|||++.|+.+.++++++.++++|++++.+
T Consensus 81 ~~~~d~TlaELk~L~~~~~~~~r~~~~~g-~~~IpTLeEvl~~~~~~gi~i~ie~~~~~~~~gl~~~~~l~~~L~~~~~v 159 (299)
T cd08603 81 WFSVDFTLAELQQVTLIQGIFSRTPIFDG-QYPISTVEDVVTLAKPEGLWLNVQHDAFYQQHNLSMSSYLLSLSKTVKVD 159 (299)
T ss_pred ceeccCCHHHHhhCCCCCCcccCCcccCC-cCCCCCHHHHHHHhHhcCeEEEEecHHHHHHcCCCHHHHHHHHHHHcCcE
Confidence 99999999999999998877778889998 56999999999999888999999999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCcccccCCCcccCCCChH
Q 003550 252 YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTT 331 (811)
Q Consensus 252 ~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~~i~~~~~~~~l~~~~~ 331 (811)
|||||+.+.|+++++.....++++++.+++.+..+.+++.+|++|.++|++|++||+||++++.+|+|.+.+.++..+++
T Consensus 160 ~iQSfe~~~L~~l~~~~~~~~~~Lv~~l~~~~~~~~~~~~~y~~~~~~L~eIa~yAdgig~~k~~i~p~~~~~~~~~~t~ 239 (299)
T cd08603 160 YISSPEVGFLKSIGGRVGRNGTKLVFRFLDKDDVEPSTNQTYGSILKNLTFIKTFASGILVPKSYIWPVDSDQYLQPATS 239 (299)
T ss_pred EEECCCHHHHHHHHHhcccCCCCeeeEeccCCCcCCCCCccHHHHHHhHHHHHHHHhhcCCChhheeecCCCCcccCccH
Confidence 99999999999999864212678998777777777778899999999999999999999999999999988889999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcchh
Q 003550 332 IVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAA 391 (811)
Q Consensus 332 ~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~~~ 391 (811)
+|++||++||+||+|||+||...+++|++||..||+.+++.|+|.||||+||||+++.++
T Consensus 240 lV~~Ah~agL~Vh~~tfr~e~~~~~~~~~d~~~e~~~~~~~g~~~vDGvfTDfP~~a~~~ 299 (299)
T cd08603 240 LVQDAHKAGLEVYASGFANDFDISYNYSYDPVAEYLSFVGNGNFSVDGVLSDFPITASEA 299 (299)
T ss_pred HHHHHHHcCCeEEEEEeeCCCCccccccCCHHHHHHHHHhcCCCCCCEEEecCchhhccC
Confidence 999999999999999999997799999999999999999998899999999999998753
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP |
| >cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-56 Score=473.19 Aligned_cols=278 Identities=26% Similarity=0.456 Sum_probs=246.5
Q ss_pred ceeecCCCCCCCCCCchHHHHHHHHHCCC--CeeecccccccCCcEEEeecCccccccccCCCcCCCccccc-cccccCc
Q 003550 408 LLVISKNGASGDYPSCTNLAYQKAISDGV--DFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTI-PEIMAGS 484 (811)
Q Consensus 408 plIIAHRGasg~~PENTl~Af~~Ai~~Ga--d~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~-~~~~~~~ 484 (811)
|+||||||+||.+||||++||+.|+++|| |+||||||+||||++||+||.+|+|+||++.. |++|.+++ .+|+..+
T Consensus 1 plVIAHRGasg~~PEnTl~Ay~~Ai~~Ga~~d~IE~DV~lTkDgvlVv~HD~~L~rtT~v~~~-F~~r~~t~~idG~~~~ 79 (299)
T cd08603 1 PLVIARGGFSGLFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTIARV-YPKRKKTYSVNGVSTK 79 (299)
T ss_pred CeEEecCCCCCCCCcchHHHHHHHHHcCCCCCEEEEEeeECcCCcEEEeCCccccccCCCccc-cccccccccccccccC
Confidence 68999999999999999999999999999 47999999999999999999999999999885 88888884 6999999
Q ss_pred cccccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHH
Q 003550 485 GIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNS 564 (811)
Q Consensus 485 G~~v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~ 564 (811)
|+++.||||+||++|++....+ .|++.+.+.++||||+|+|++++.. ++++|||+++++. +.|+++++.
T Consensus 80 g~~~~d~TlaELk~L~~~~~~~------~r~~~~~g~~~IpTLeEvl~~~~~~----gi~i~ie~~~~~~-~~gl~~~~~ 148 (299)
T cd08603 80 GWFSVDFTLAELQQVTLIQGIF------SRTPIFDGQYPISTVEDVVTLAKPE----GLWLNVQHDAFYQ-QHNLSMSSY 148 (299)
T ss_pred CceeccCCHHHHhhCCCCCCcc------cCCcccCCcCCCCCHHHHHHHhHhc----CeEEEEecHHHHH-HcCCCHHHH
Confidence 9999999999999999875432 3678888866999999999999874 8999999999987 489999999
Q ss_pred HHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc---cCceEEE-EEccc---------cchhchHhHHHHHHhhhhhcc
Q 003550 565 VMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK---TSYELVY-KVKEN---------IRDALNQTIEDIKKFADSVVL 631 (811)
Q Consensus 565 v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~---p~~~~~~-l~~~~---------~~d~~~~~l~~i~~~a~~v~~ 631 (811)
|+++|+++|+ |+||||++..|+++++. +++++++ +++.. +.++.. ++++|++||++|++
T Consensus 149 l~~~L~~~~~-------v~iQSfe~~~L~~l~~~~~~~~~~Lv~~l~~~~~~~~~~~~~y~~~~~-~L~eIa~yAdgig~ 220 (299)
T cd08603 149 LLSLSKTVKV-------DYISSPEVGFLKSIGGRVGRNGTKLVFRFLDKDDVEPSTNQTYGSILK-NLTFIKTFASGILV 220 (299)
T ss_pred HHHHHHHcCc-------EEEECCCHHHHHHHHHhcccCCCCeeeEeccCCCcCCCCCccHHHHHH-hHHHHHHHHhhcCC
Confidence 9999998754 79999999999999986 6788887 55431 122222 59999999999999
Q ss_pred ccceeecCC-ccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcC---CCEEEeCChHHHHH
Q 003550 632 SKESVYPLN-SAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAG---IDGVITEFPMTAAR 707 (811)
Q Consensus 632 ~~~~i~p~~-~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~G---VDGIiTD~P~~~~~ 707 (811)
++.+++|.. ..++...+.+|+++|++||.||+||++||.. ++++|+.||+.|+..|+ +.| ||||+||||+++.+
T Consensus 221 ~k~~i~p~~~~~~~~~~t~lV~~Ah~agL~Vh~~tfr~e~~-~~~~~~~d~~~e~~~~~-~~g~~~vDGvfTDfP~~a~~ 298 (299)
T cd08603 221 PKSYIWPVDSDQYLQPATSLVQDAHKAGLEVYASGFANDFD-ISYNYSYDPVAEYLSFV-GNGNFSVDGVLSDFPITASE 298 (299)
T ss_pred ChhheeecCCCCcccCccHHHHHHHHcCCeEEEEEeeCCCC-ccccccCCHHHHHHHHH-hcCCCCCCEEEecCchhhcc
Confidence 999999975 4667778899999999999999999999987 99999999999999998 666 99999999999865
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP |
| >cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-52 Score=454.37 Aligned_cols=300 Identities=65% Similarity=1.035 Sum_probs=252.5
Q ss_pred ceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccc
Q 003550 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (811)
Q Consensus 408 plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~ 487 (811)
|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||+....|.+|.++++++.+.+|++
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~~~~~~~~~ 80 (300)
T cd08604 1 PLIISHNGASGDYPGCTDLAYQKAVKDGADVIDCSVQMSKDGVPFCLDSINLINSTTVATSKFSNRATTVPEIGSTSGIF 80 (300)
T ss_pred CeEEecCCcCCCCCcchHHHHHHHHHcCCCEEEEeeeEcCCCCEEEeccccccCcccCCcccccccccccccccccCcee
Confidence 58999999999999999999999999999999999999999999999999999999988767889988887777778888
Q ss_pred ccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHH
Q 003550 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (811)
Q Consensus 488 v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~ 567 (811)
+.|+||+||++|+++....+...+..+++.+.+.++||||+|+|+++++.. .++++||||.+.....+.+..++++|++
T Consensus 81 v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~iptL~Evl~~~~~~~-~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 159 (300)
T cd08604 81 TFDLTWSEIQTLKPAISNPYSVTGLFRNPANKNAGKFLTLSDFLDLAKNKS-LSGVLINVENAAYLAEKKGLDVVDAVLD 159 (300)
T ss_pred eecCcHHHHhhCccCCcCcccccCcCCCcccCCCCCCCCHHHHHHHHHhcC-CceEEEEeeccchhhhccCccHHHHHHH
Confidence 999999999999987543322223455667776689999999999998762 2489999998765432235568999999
Q ss_pred HHHhcCCCCCCCcEEEEEeCChHHHHHHHhccCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccCCC
Q 003550 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSA 647 (811)
Q Consensus 568 ~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~ 647 (811)
+|+++++.+...++|+||||++++|+.+++..+++++++++....+.....+++++.+|++++++...+.|....++...
T Consensus 160 ~l~~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~ 239 (300)
T cd08604 160 ALTNAGYDNQTAQKVLIQSTDSSVLAAFKKQISYERVYVVDETIRDASDSSIEEIKKFADAVVIDRGSVFPVSTSFLTRQ 239 (300)
T ss_pred HHHHcCCCCCCCCeEEEEcCCHHHHHHHHhccCCceEEEecCcccccChhHHHHHHHhccEEEeChhhcccccCCcccCc
Confidence 99999986322248999999999999999987889999987554444455567777888889888777776554555556
Q ss_pred HHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHHHHH
Q 003550 648 TDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARY 708 (811)
Q Consensus 648 ~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~~~~ 708 (811)
+++|+++|++|++|++||+|++...++++|+.||..++..++.++||||||||+|+++.+|
T Consensus 240 ~~~v~~a~~~Gl~v~vwTvn~~~~~~~~~~~~~~~~~~~~~~~~~GVdgIiTD~P~~~~~~ 300 (300)
T cd08604 240 TNVVEKLQSANLTVYVEVLRNEFVSLAFDFFADPTVEINSYVQGAGVDGFITEFPATAARY 300 (300)
T ss_pred hHHHHHHHHCCCEEEEEEecCCccccchhccCCHHHHHHHHHHHcCCCEEEecCchhhhcC
Confidence 6899999999999999999999888999999999988888777899999999999999875
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP |
| >cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-52 Score=449.05 Aligned_cols=296 Identities=50% Similarity=0.793 Sum_probs=244.9
Q ss_pred ceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccc-cccccccCccc
Q 003550 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITT-TIPEIMAGSGI 486 (811)
Q Consensus 408 plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~-~~~~~~~~~G~ 486 (811)
|+||||||++|.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||+... |++|.. .+.+++++.|+
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDg~lVv~HD~~l~rtt~~~~~-~~~~~~~~~~~~~~~~g~ 79 (302)
T cd08571 1 PLVIARGGASGDYPDSTDLAYQKAISDGADVLDCDVQLTKDGVPICLPSINLDNSTTIASV-FPKRKKTYVVEGQSTSGI 79 (302)
T ss_pred CeEEeCCCcCCCCCcchHHHHHHHHHcCCCEEEeeeeEcCCCcEEEeCCchhcCCcccccc-cccccceecccCcccCCe
Confidence 6899999999999999999999999999999999999999999999999999999998765 444444 46788889997
Q ss_pred cccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHH
Q 003550 487 FSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVM 566 (811)
Q Consensus 487 ~v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~ 566 (811)
++.|+||+||++|+++...+|. ...|++.+.+.++||||+|+|+++++.+ ..+++||||.+.+.....+.++++.++
T Consensus 80 ~v~d~T~aeL~~l~~~~~~~~~--~~~~~~~~~~~~~IptL~evl~~~~~~~-~~~l~iEiK~~~~~~~~~~~~~~~~v~ 156 (302)
T cd08571 80 FSFDLTWAEIQTLKPIISNPFS--VLFRNPRNDNAGKILTLEDFLTLAKPKS-LSGVWINVENAAFLAEHKGLLSVDAVL 156 (302)
T ss_pred eeeeCCHHHHhhCcccccCccc--ccCCCcccCCCCCcCCHHHHHHhhhccC-CceEEEEccCchhhhhhccccHHHHHH
Confidence 7999999999999987554332 1345566666679999999999999752 258999999876543323456889999
Q ss_pred HHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc---cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCC-cc
Q 003550 567 EALGNAGYNKQTALKVMIQSTDSSVLMKLREK---TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLN-SA 642 (811)
Q Consensus 567 ~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~---p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~-~~ 642 (811)
++|+++++... .++|+|||||+.+|+++++. |.++++++++....+.....+.+++.||++++++...+.|.. ..
T Consensus 157 ~~l~~~~~~~~-~~~v~i~SF~~~~L~~~~~~~~~p~v~~~~l~~~~~~~~~~~~l~~~~~~a~~v~~~~~~~~~~~~~~ 235 (302)
T cd08571 157 TSLSKAGYDQT-AKKVYISSPDSSVLKSFKKRVGTKLVFRVLDVDDTEPDTLLSNLTEIKKFASGVLVPKSYIWPVDSDS 235 (302)
T ss_pred HHHHHcCCCCC-CCCEEEeCCCHHHHHHHHhccCCCceEEEeecCCCcCCCChhHHHHHHHhcCccccChhHeeecCCCC
Confidence 99999998521 25999999999999999986 788888887654332234557788889999999877777643 23
Q ss_pred ccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhc-CCCEEEeCChHHHHHH
Q 003550 643 FITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGA-GIDGVITEFPMTAARY 708 (811)
Q Consensus 643 ~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~-GVDGIiTD~P~~~~~~ 708 (811)
+....+.+|+++|++|++|++||+|++...++|+|+.|+..++..++..+ ||||||||||+++++|
T Consensus 236 ~~~~~~~~V~~ah~~Gl~V~~wTvn~~~~~~~~~~~~~~~~~~~~~~~~~~gVDGiiTD~P~~~~~~ 302 (302)
T cd08571 236 FLTPQTSVVQDAHKAGLEVYVSGFANEFVSLAYDYSADPTLEILSFVGNGNSVDGVITDFPATAARA 302 (302)
T ss_pred cccCccHHHHHHHHcCCEEEEEEEecCcccccccccCCHHHHHHHHHHhcCCCCEEEecCchhhhcC
Confidence 34445689999999999999999999998899999999999999999555 9999999999999875
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv |
| >cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=431.00 Aligned_cols=287 Identities=30% Similarity=0.454 Sum_probs=237.7
Q ss_pred ceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCc-CCCcccc-ccccccCcc
Q 003550 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSK-FNSITTT-IPEIMAGSG 485 (811)
Q Consensus 408 plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~-f~~r~~~-~~~~~~~~G 485 (811)
|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|++...+ |++|..+ ..++.+..|
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DVqlTkDg~lVv~HD~~l~rtt~~~~~~~~~~r~~~~~i~~~~~~~ 80 (309)
T cd08602 1 PLVIAHRGASGYRPEHTLAAYQLAIEQGADFIEPDLVSTKDGVLICRHEPELSGTTDVADHPEFADRKTTKTVDGVNVTG 80 (309)
T ss_pred CeEEecCCCCCCCCccHHHHHHHHHHcCCCEEEEeeeECCCCcEEEeCCCccccccCccccccccccccccccCCcccCC
Confidence 68999999999999999999999999999999999999999999999999999999986643 6677665 234556678
Q ss_pred ccccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcC----CCceEEEEecchhHHHhhcCccH
Q 003550 486 IFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNAN----SLSGVLISIENAVYLAEKQGMSV 561 (811)
Q Consensus 486 ~~v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~----~~~gi~IEiK~~~~~~~~~g~~~ 561 (811)
+++.++||+||++|+++.+++. +++.+.+.++||||+|+|+++++.+ +.++++||||.+.......+..+
T Consensus 81 ~~v~d~t~~eL~~l~~~~~~~~------~~~~~~~~~~iptL~Evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~ 154 (309)
T cd08602 81 WFTEDFTLAELKTLRARQRLPY------RDQSYDGQFPIPTFEEIIALAKAASAATGRTVGIYPEIKHPTYFNAPLGLPM 154 (309)
T ss_pred eeeccCCHHHHhhCccCCcCcc------cCcccCCCcCcCCHHHHHHHHHhhhhcccccceeEEeecCchhcccccCCCH
Confidence 6799999999999999876532 2344556569999999999998752 13689999997765432245679
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhccCceEEEEEccccc---h------------hchHhHHHHHHhh
Q 003550 562 TNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIR---D------------ALNQTIEDIKKFA 626 (811)
Q Consensus 562 ~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~p~~~~~~l~~~~~~---d------------~~~~~l~~i~~~a 626 (811)
+++|+++|+++++.+. .++|+|||||+++|++++++.+++++++++.... + ..+..+++++.++
T Consensus 155 ~~~v~~~l~~~~~~~~-~~~v~i~SFd~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (309)
T cd08602 155 EDKLLETLKKYGYTGK-KAPVFIQSFEVTNLKYLRNKTDLPLVQLIDDATIPPQDTPEGDSRTYADLTTDAGLKEIATYA 233 (309)
T ss_pred HHHHHHHHHHcCCCCC-CCCEEEECCCHHHHHHHHhhhCCCeEEEecCCCCCcccccccCccchhhhcCHHHHHHHHhhc
Confidence 9999999999998631 1499999999999999998878899999865421 0 2334567777889
Q ss_pred hhhccccceeecCCc-cccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCCh
Q 003550 627 DSVVLSKESVYPLNS-AFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (811)
Q Consensus 627 ~~v~~~~~~i~p~~~-~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P 702 (811)
+++++++..+.|... ..+...+++|+++|++|++|++||+|++..+++++|++|+.+++..++ ++||||||||+|
T Consensus 234 ~~i~~~~~~~~~~~~~~~~~~~~~~v~~a~~~gl~v~~wTvn~~~~~~~~~~~~~~~~~~~~l~-~~GVdgiiTD~P 309 (309)
T cd08602 234 DGIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVHPYTFRNENTFLPPDFFGDPYAEYRAFL-DAGVDGLFTDFP 309 (309)
T ss_pred eEEecchheEEecCCCCcccCccHHHHHHHHcCCEEEEEEecCCCcccCcccCCCHHHHHHHHH-HhCCCEEeCCCC
Confidence 999998888777532 334456789999999999999999999998999999999999999998 799999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively. |
| >cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-49 Score=429.36 Aligned_cols=283 Identities=43% Similarity=0.734 Sum_probs=237.5
Q ss_pred CEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCc
Q 003550 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (811)
Q Consensus 92 plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g 171 (811)
|+||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+||+.+.++.++++|.++|.+..|
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad--~IE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~~~~~~g 78 (302)
T cd08571 1 PLVIARGGASGDYPDSTDLAYQKAISDGAD--VLDCDVQLTKDGVPICLPSINLDNSTTIASVFPKRKKTYVVEGQSTSG 78 (302)
T ss_pred CeEEeCCCcCCCCCcchHHHHHHHHHcCCC--EEEeeeeEcCCCcEEEeCCchhcCCcccccccccccceecccCcccCC
Confidence 689999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred ccccccCHHhhccccccccccC----CCCCCCCCCcccccHHHHHHhhCC---CceEEeeccchhhhh-cCchHHHHHHH
Q 003550 172 WFSIDYTLNDLSNIILNQGVYS----RTDKFDGNGFQILTVQDMARQIKP---PGLWLNIQHDAFYAQ-HNLSMRSFVLS 243 (811)
Q Consensus 172 ~~v~d~t~~eL~~l~~~~~~~~----~~~~~~~~~~~iptL~evl~~~~~---~~l~leiK~~~~~~~-~~~~~~~~l~~ 243 (811)
|++.|+|++||++|+++++... |...|.+ +++||||+|+|++++. .+++||||.+.+..+ .+..+++.+++
T Consensus 79 ~~v~d~T~aeL~~l~~~~~~~~~~~~~~~~~~~-~~~IptL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 157 (302)
T cd08571 79 IFSFDLTWAEIQTLKPIISNPFSVLFRNPRNDN-AGKILTLEDFLTLAKPKSLSGVWINVENAAFLAEHKGLLSVDAVLT 157 (302)
T ss_pred eeeeeCCHHHHhhCcccccCcccccCCCcccCC-CCCcCCHHHHHHhhhccCCceEEEEccCchhhhhhccccHHHHHHH
Confidence 9999999999999998654322 4555666 5799999999999975 579999997764332 23468889999
Q ss_pred HhhhcCc------eEEecCCHHHHHHHHHhc--CCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCc
Q 003550 244 VSRSVVV------NYISSPEVNFLRSIAARF--RPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKD 315 (811)
Q Consensus 244 ~lk~~~~------~~isSf~~~~L~~l~~~~--~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~ 315 (811)
+++++++ .+||||+...|+++++.. | ..+++++. +... ..+ ....+..++.++.++++++.
T Consensus 158 ~l~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~~p--~v~~~~l~-~~~~------~~~--~~~~l~~~~~~a~~v~~~~~ 226 (302)
T cd08571 158 SLSKAGYDQTAKKVYISSPDSSVLKSFKKRVGTK--LVFRVLDV-DDTE------PDT--LLSNLTEIKKFASGVLVPKS 226 (302)
T ss_pred HHHHcCCCCCCCCEEEeCCCHHHHHHHHhccCCC--ceEEEeec-CCCc------CCC--ChhHHHHHHHhcCccccChh
Confidence 9999864 499999999999999998 6 56666532 1110 001 01245677788999999988
Q ss_pred ccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCC-CCcccCCCCChHHHHHHHHHc--CCCccCeEeccCCCCcchh
Q 003550 316 YIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLSFIDN--GDFSVDGVLSDFPLTPSAA 391 (811)
Q Consensus 316 ~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~-~~~~~~~~~D~~~e~~~~i~~--G~~~VDgIiTD~P~~a~~~ 391 (811)
++.+.+...+....+++|++||++|++|++||||++ ...+|+|..|+..++.+++.. | |||||||+|+++.++
T Consensus 227 ~~~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~~~~~~~~~~~~~~~~~~~~~~~~~g---VDGiiTD~P~~~~~~ 302 (302)
T cd08571 227 YIWPVDSDSFLTPQTSVVQDAHKAGLEVYVSGFANEFVSLAYDYSADPTLEILSFVGNGNS---VDGVITDFPATAARA 302 (302)
T ss_pred HeeecCCCCcccCccHHHHHHHHcCCEEEEEEEecCcccccccccCCHHHHHHHHHHhcCC---CCEEEecCchhhhcC
Confidence 888754445555667899999999999999999997 467899999999999999987 7 999999999988653
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv |
| >cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=425.15 Aligned_cols=285 Identities=31% Similarity=0.471 Sum_probs=244.0
Q ss_pred CEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhh--hhcccccccccCCCCC
Q 003550 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQ--IFKTQQKNYLVNGVPT 169 (811)
Q Consensus 92 plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~--~~~~~~~~y~~~G~~~ 169 (811)
|+||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+|++.+ .|++|++++.++|.+.
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DVqlTkDg~lVv~HD~~l~rtt~~~~~~~~~~r~~~~~i~~~~~ 78 (309)
T cd08602 1 PLVIAHRGASGYRPEHTLAAYQLAIEQGAD--FIEPDLVSTKDGVLICRHEPELSGTTDVADHPEFADRKTTKTVDGVNV 78 (309)
T ss_pred CeEEecCCCCCCCCccHHHHHHHHHHcCCC--EEEEeeeECCCCcEEEeCCCccccccCccccccccccccccccCCccc
Confidence 689999999999999999999999999999 999999999999999999999999999977 4889999999999999
Q ss_pred CcccccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--------CceEEeeccchhhhh-cCchHHHH
Q 003550 170 PGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--------PGLWLNIQHDAFYAQ-HNLSMRSF 240 (811)
Q Consensus 170 ~g~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~--------~~l~leiK~~~~~~~-~~~~~~~~ 240 (811)
.||++.|+|++||++++++.++.++...|.+ .++||||+|+|++++. .+++||||.+.+... .+..+++.
T Consensus 79 ~~~~v~d~t~~eL~~l~~~~~~~~~~~~~~~-~~~iptL~Evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~ 157 (309)
T cd08602 79 TGWFTEDFTLAELKTLRARQRLPYRDQSYDG-QFPIPTFEEIIALAKAASAATGRTVGIYPEIKHPTYFNAPLGLPMEDK 157 (309)
T ss_pred CCeeeccCCHHHHhhCccCCcCcccCcccCC-CcCcCCHHHHHHHHHhhhhcccccceeEEeecCchhcccccCCCHHHH
Confidence 9999999999999999999877655556666 5699999999999853 479999998765432 45678999
Q ss_pred HHHHhhhcCc------eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCc--cCC--CcccchHHHhh--hHHHHHhhcc
Q 003550 241 VLSVSRSVVV------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSE--IEP--TTNQTYGSLLK--NLTFIKTFAS 308 (811)
Q Consensus 241 l~~~lk~~~~------~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~--~~~--~~~~~y~~l~~--~L~~i~~~a~ 308 (811)
++++++++++ .+||||+.+.|++++++. ..++++++..... ..+ +.+.+|.++.. .++.++.++.
T Consensus 158 v~~~l~~~~~~~~~~~v~i~SFd~~~L~~~~~~~---~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (309)
T cd08602 158 LLETLKKYGYTGKKAPVFIQSFEVTNLKYLRNKT---DLPLVQLIDDATIPPQDTPEGDSRTYADLTTDAGLKEIATYAD 234 (309)
T ss_pred HHHHHHHcCCCCCCCCEEEECCCHHHHHHHHhhh---CCCeEEEecCCCCCcccccccCccchhhhcCHHHHHHHHhhce
Confidence 9999999875 389999999999999987 4678875532221 111 22456775443 5677778899
Q ss_pred cccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCC-CCcccCCCCChHHHHHHHHHcCCCccCeEeccCC
Q 003550 309 GILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (811)
Q Consensus 309 gi~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~-~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P 385 (811)
++++++.++++.+..+++...+++|+.||++|++|++||||++ ...+++|.+|+.++|+.+++.| ||||+||+|
T Consensus 235 ~i~~~~~~~~~~~~~~~~~~~~~~v~~a~~~gl~v~~wTvn~~~~~~~~~~~~~~~~~~~~l~~~G---VdgiiTD~P 309 (309)
T cd08602 235 GIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVHPYTFRNENTFLPPDFFGDPYAEYRAFLDAG---VDGLFTDFP 309 (309)
T ss_pred EEecchheEEecCCCCcccCccHHHHHHHHcCCEEEEEEecCCCcccCcccCCCHHHHHHHHHHhC---CCEEeCCCC
Confidence 9999999998876666777778999999999999999999997 5788999999999999999999 999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively. |
| >cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=421.47 Aligned_cols=303 Identities=15% Similarity=0.193 Sum_probs=229.6
Q ss_pred ccccccceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecC-ccccccccCCCc-CCCccccc-c
Q 003550 402 ASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFI-NLINSTNAAQSK-FNSITTTI-P 478 (811)
Q Consensus 402 ~~~~~~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~-~L~rtT~v~~~~-f~~r~~~~-~ 478 (811)
++....++||||||++|.+||||++||++|+++|||+||||||+||||++||+||. +|+|+||+...+ |++|.++. .
T Consensus 11 ~~~~~~~~iIAHRGasg~~PEnTl~Af~~Ai~~Gad~IE~DV~lTkDg~lVV~HD~~~L~rtTnv~~~pe~a~r~~~~~~ 90 (356)
T cd08560 11 KPFRKTDFSIGHRGAPLQFPEHTRESYEAAARMGAGILECDVTFTKDRELVCRHSQCDLHTTTNILAIPELAAKCTQPFT 90 (356)
T ss_pred CCCCCCceEEEcCCCCCCCCcchHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCccccCccCCccccchhhhcccccc
Confidence 34456899999999999999999999999999999999999999999999999997 899999998754 77777652 2
Q ss_pred cccc----CccccccCCCHHHHhccCcccc--CCcc--------cccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEE
Q 003550 479 EIMA----GSGIFSFSLIWDEIQTLIPQIS--NPYF--------KFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVL 544 (811)
Q Consensus 479 ~~~~----~~G~~v~dlT~~ELk~L~~~~~--~p~~--------~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~ 544 (811)
++.. ..|+++.|+||+||++|+.+.. .++. ++..+++..+.+.++||||+|+|+++++.+ ++++
T Consensus 91 ~g~~~~~~~~~~~v~d~TlaELk~L~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~IPTL~Evl~lv~~~~--v~l~ 168 (356)
T cd08560 91 PANATKPASAECCTSDITLAEFKSLCGKMDASNPSATTPEEYQNGTPDWRTDLYATCGTLMTHKESIALFKSLG--VKMT 168 (356)
T ss_pred ccccccccccCcchhhCcHHHHhcCCCccccccccccccccccccccccccccccCCCCCCCHHHHHHHHHhcC--ceEE
Confidence 2222 3345899999999999987532 1110 112345555666679999999999998752 7999
Q ss_pred EEecchhHHHhhcC----ccHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceE--EEEEccc-cch---
Q 003550 545 ISIENAVYLAEKQG----MSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYEL--VYKVKEN-IRD--- 613 (811)
Q Consensus 545 IEiK~~~~~~~~~g----~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~--~~l~~~~-~~d--- 613 (811)
||||.+.+.....| .++++.++++|+++++.. ++|+|||||+..|+++++. |++++ +++.+.. ..+
T Consensus 169 iEiK~~~~~~~~~g~~~~~~~~~~l~~~l~~~g~~~---~~v~iqSFd~~~L~~~~~~~p~~~~~l~~l~~~~~~~~~~~ 245 (356)
T cd08560 169 PELKSPSVPMPFDGNYTQEDYAQQMIDEYKEAGVPP---SRVWPQSFNLDDIFYWIKNEPDFGRQAVYLDDRDDTADFPA 245 (356)
T ss_pred EEeCCCcccccccccccHHHHHHHHHHHHHHcCCCC---CCEEEECCCHHHHHHHHHhCCCCCeeEEEEccCCccccccc
Confidence 99998765322112 158899999999999862 4999999999999999887 97755 5554421 000
Q ss_pred hchHhHHHH-HHhhhhhccccceeecCCccccCCCHHHHHHHHHcCCcEEEEecCCccccc--c-cc---------cCCC
Q 003550 614 ALNQTIEDI-KKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQ--A-WD---------FFSD 680 (811)
Q Consensus 614 ~~~~~l~~i-~~~a~~v~~~~~~i~p~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~--~-~d---------~~~D 680 (811)
.-...++++ +.+++.+++++..+++...+.....+.+|+++|++||+|++||++++...+ | +. ..+|
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~~~~~~~v~~Ah~~GL~V~~WTvr~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDENGKIVPSEYAKAAKAAGLDIITWTLERSGPLASGGGWYYQTIEDVINNDGD 325 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhccccccccccCCHHHHHHHHHcCCEEEEEEeecCcccccCccccccccccccccccc
Confidence 011346666 556888889877666543333345789999999999999999998775444 4 22 3455
Q ss_pred hHHHHHHHHHhcCCCEEEeCChHHHHHHH
Q 003550 681 PTVEINTYYEGAGIDGVITEFPMTAARYR 709 (811)
Q Consensus 681 ~~~e~~~~l~~~GVDGIiTD~P~~~~~~~ 709 (811)
...++..+++++|||||+||||+++..|.
T Consensus 326 ~~~~~~~~~~~~GvDGvftD~p~~~~~~~ 354 (356)
T cd08560 326 MYNVLDVLARDVGILGIFSDWPATVTYYA 354 (356)
T ss_pred HHHHHHHHHHhcCCCEEEccCCCceeEec
Confidence 56778877778999999999999887765
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=411.00 Aligned_cols=284 Identities=24% Similarity=0.313 Sum_probs=214.8
Q ss_pred ceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccc
Q 003550 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (811)
Q Consensus 408 plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~ 487 (811)
|+||||||++|.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||++.. |++|... .+.| +
T Consensus 1 ~lviAHRG~s~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~-~~~~~~~-----~g~~-~ 73 (318)
T cd08600 1 KIIIAHRGASGYLPEHTLEAKALAYAQGADYLEQDVVLTKDDKLVVIHDHYLDNVTNVAEK-FPDRKRK-----DGRY-Y 73 (318)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCCEEEeeeeECcCCcEEEeCCchhhccCCcccc-ccccccc-----CCce-e
Confidence 6899999999999999999999999999999999999999999999999999999997753 4454432 1445 7
Q ss_pred ccCCCHHHHhccCccccCCcc---ccccc--CCcCCCCCCCCCCHHHHHHHHHhcC----CCceEEEEecchhHHHhhcC
Q 003550 488 SFSLIWDEIQTLIPQISNPYF---KFKLF--RNPKNKNAGKFMKLSDFLEMAKNAN----SLSGVLISIENAVYLAEKQG 558 (811)
Q Consensus 488 v~dlT~~ELk~L~~~~~~p~~---~~~~~--rn~~~~~~~~ipTL~E~L~~~k~~~----~~~gi~IEiK~~~~~~~~~g 558 (811)
|.++||+||++|+++.++... ....+ +.+.....++||||+|+|+++++.+ ..++++||||.+.... ..+
T Consensus 74 v~dlT~aEL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~~~~IptL~evl~~~~~~~~~~~~~~~l~iEiK~~~~~~-~~~ 152 (318)
T cd08600 74 VIDFTLDELKSLSVTERFDIENGKKVQVYPNRFPLWKSDFKIHTLEEEIELIQGLNKSTGKNVGIYPEIKAPWFHH-QEG 152 (318)
T ss_pred EeeCcHHHHhhCCCCCCcccccccccccccccCcccCCCCccCCHHHHHHHHHHhhhhcCCcceEEEeecCchhhh-hcc
Confidence 999999999999998763210 00000 1111123468999999999998631 1368999999765432 134
Q ss_pred ccHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHh-c-c----CceEEEEEccc-cch-----------------h
Q 003550 559 MSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLRE-K-T----SYELVYKVKEN-IRD-----------------A 614 (811)
Q Consensus 559 ~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~-~-p----~~~~~~l~~~~-~~d-----------------~ 614 (811)
.++++.|+++|+++++.+. ..+|+||||++.+|+++|+ . | ++++++++... +.. .
T Consensus 153 ~~~~~~v~~~l~~~~~~~~-~~~v~i~SF~~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (318)
T cd08600 153 KDIAAATLEVLKKYGYTSK-NDKVYLQTFDPNELKRIKNELLPKMGMDLKLVQLIAYTDWGETQEKDPGGWVNYDYDWMF 231 (318)
T ss_pred ccHHHHHHHHHHHcCCCCC-CCeEEEEeCCHHHHHHHHHhhCccccCCcceEEEeccCCCCcccccccCCccccchhhhc
Confidence 5699999999999998632 2489999999999999997 6 9 99999998631 111 1
Q ss_pred chHhHHHHHHhhhhhccccceeecCCcc-ccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcC
Q 003550 615 LNQTIEDIKKFADSVVLSKESVYPLNSA-FITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAG 693 (811)
Q Consensus 615 ~~~~l~~i~~~a~~v~~~~~~i~p~~~~-~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~G 693 (811)
++..+.+++.+|+.+++++..+.+.... +...++++|+++|++|+.|++||+|+++..+ ++.|.......++.++|
T Consensus 232 ~~~~l~~~~~~a~~i~~~~~~l~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~~~~~---~~~~~~~~~~~~l~~~G 308 (318)
T cd08600 232 TKGGLKEIAKYADGVGPWYSMIIEEKSSKGNIVLTDLVKDAHEAGLEVHPYTVRKDALPE---YAKDADQLLDALLNKAG 308 (318)
T ss_pred CHHHHHHHHHhheeccCCHHHcccccCCCCccChHHHHHHHHHcCCEEEEEeccCCcccc---ccCCHHHHHHHHHHhcC
Confidence 2345778888999999987766543211 2234678999999999999999999996422 23444433344345899
Q ss_pred CCEEEeCChH
Q 003550 694 IDGVITEFPM 703 (811)
Q Consensus 694 VDGIiTD~P~ 703 (811)
|||||||+|+
T Consensus 309 VDGiiTD~P~ 318 (318)
T cd08600 309 VDGVFTDFPD 318 (318)
T ss_pred CcEEEcCCCC
Confidence 9999999995
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP |
| >cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-47 Score=408.68 Aligned_cols=280 Identities=23% Similarity=0.398 Sum_probs=226.9
Q ss_pred CEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhh-hhcccccccccCCCCCC
Q 003550 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQ-IFKTQQKNYLVNGVPTP 170 (811)
Q Consensus 92 plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~-~~~~~~~~y~~~G~~~~ 170 (811)
|+||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+||+.+ .|+.+++++. ++..+.
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDG~lVv~HD~~l~rtt~~~~~~~~~~~~~~~-~~~~~~ 77 (300)
T cd08604 1 PLIISHNGASGDYPGCTDLAYQKAVKDGAD--VIDCSVQMSKDGVPFCLDSINLINSTTVATSKFSNRATTVP-EIGSTS 77 (300)
T ss_pred CeEEecCCcCCCCCcchHHHHHHHHHcCCC--EEEEeeeEcCCCCEEEeccccccCcccCCcccccccccccc-cccccC
Confidence 689999999999999999999999999999 999999999999999999999999999987 7888888854 333478
Q ss_pred cccccccCHHhhcccccccccc------CCCCCCCCCCcccccHHHHHHhhCC---CceEEeeccchhhh-hcCchHHHH
Q 003550 171 GWFSIDYTLNDLSNIILNQGVY------SRTDKFDGNGFQILTVQDMARQIKP---PGLWLNIQHDAFYA-QHNLSMRSF 240 (811)
Q Consensus 171 g~~v~d~t~~eL~~l~~~~~~~------~~~~~~~~~~~~iptL~evl~~~~~---~~l~leiK~~~~~~-~~~~~~~~~ 240 (811)
||++.|+|++||+++++++... .+...|.+ .++||||+|+|++++. .+++||||.+.+.. +.+..+++.
T Consensus 78 ~~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~~~-~~~iptL~Evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~ 156 (300)
T cd08604 78 GIFTFDLTWSEIQTLKPAISNPYSVTGLFRNPANKN-AGKFLTLSDFLDLAKNKSLSGVLINVENAAYLAEKKGLDVVDA 156 (300)
T ss_pred ceeeecCcHHHHhhCccCCcCcccccCcCCCcccCC-CCCCCCHHHHHHHHHhcCCceEEEEeeccchhhhccCccHHHH
Confidence 8999999999999999875321 23455665 5799999999999864 47999999776432 334578999
Q ss_pred HHHHhhhcCc-------eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCC
Q 003550 241 VLSVSRSVVV-------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVP 313 (811)
Q Consensus 241 l~~~lk~~~~-------~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~ 313 (811)
++++++++++ .+||||+.+.|+++++.. ..++++++-. .. ..+ ....+..++.++.+++++
T Consensus 157 v~~~l~~~~~~~~~~~~v~i~SF~~~~L~~~~~~~---~~~~~~l~~~-~~------~~~--~~~~~~~~~~~a~~v~~~ 224 (300)
T cd08604 157 VLDALTNAGYDNQTAQKVLIQSTDSSVLAAFKKQI---SYERVYVVDE-TI------RDA--SDSSIEEIKKFADAVVID 224 (300)
T ss_pred HHHHHHHcCCCCCCCCeEEEEcCCHHHHHHHHhcc---CCceEEEecC-cc------ccc--ChhHHHHHHHhccEEEeC
Confidence 9999998875 389999999999999976 4677764421 10 011 012345667788999998
Q ss_pred CcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCC-CCcccCCCCChHHHHHH-HHHcCCCccCeEeccCCCCcchh
Q 003550 314 KDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLS-FIDNGDFSVDGVLSDFPLTPSAA 391 (811)
Q Consensus 314 ~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~-~~~~~~~~~D~~~e~~~-~i~~G~~~VDgIiTD~P~~a~~~ 391 (811)
+..+++.. ..++...+++|++||++|++|++||||++ ...+++|..||.+++.+ +.+.| ||||+||+|+++.++
T Consensus 225 ~~~~~~~~-~~~~~~~~~~v~~a~~~Gl~v~vwTvn~~~~~~~~~~~~~~~~~~~~~~~~~G---VdgIiTD~P~~~~~~ 300 (300)
T cd08604 225 RGSVFPVS-TSFLTRQTNVVEKLQSANLTVYVEVLRNEFVSLAFDFFADPTVEINSYVQGAG---VDGFITEFPATAARY 300 (300)
T ss_pred hhhccccc-CCcccCchHHHHHHHHCCCEEEEEEecCCccccchhccCCHHHHHHHHHHHcC---CCEEEecCchhhhcC
Confidence 88887754 34555567899999999999999999986 58899999999766665 55788 999999999988753
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP |
| >PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=414.32 Aligned_cols=297 Identities=23% Similarity=0.287 Sum_probs=226.8
Q ss_pred cccccceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCcccccccccc
Q 003550 403 SKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMA 482 (811)
Q Consensus 403 ~~~~~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~ 482 (811)
..+.+|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|++... |+.|.+. .
T Consensus 22 ~~~~~pliiAHRGas~~~PENTl~Af~~A~~~GaD~IE~DV~lTkDg~lVv~HD~~l~rtT~~~~~-~~~~~~~-----~ 95 (355)
T PRK11143 22 ADSAEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDQLVVLHDHYLDRVTDVAER-FPDRARK-----D 95 (355)
T ss_pred hcCCCcEEEECCCCCCCCCcchHHHHHHHHHcCCCEEEEeeeEccCCcEEEeCCchhcccCCcccc-ccccccc-----C
Confidence 467899999999999999999999999999999999999999999999999999999999997653 5554432 2
Q ss_pred CccccccCCCHHHHhccCccccCCcc-cc----cccCCcCCCCCCCCCCHHHHHHHHHhcC----CCceEEEEecchhHH
Q 003550 483 GSGIFSFSLIWDEIQTLIPQISNPYF-KF----KLFRNPKNKNAGKFMKLSDFLEMAKNAN----SLSGVLISIENAVYL 553 (811)
Q Consensus 483 ~~G~~v~dlT~~ELk~L~~~~~~p~~-~~----~~~rn~~~~~~~~ipTL~E~L~~~k~~~----~~~gi~IEiK~~~~~ 553 (811)
+.| ++.++||+||++|+++.++... .. +..+.+.....++||||+|+|++++..+ ..++++||||.+.+.
T Consensus 96 g~~-~v~dlT~aEL~~ld~~~~f~~~~g~~~~~~~~~~~~~~~~~~IPTL~Evl~~~~~~~~~~~~~~~l~IEiK~~~~~ 174 (355)
T PRK11143 96 GRY-YAIDFTLDEIKSLKFTEGFDIENGKKVQVYPGRFPMGKSDFRVHTFEEEIEFIQGLNHSTGKNIGIYPEIKAPWFH 174 (355)
T ss_pred Cce-eEeeCcHHHHhhCCCCCCcccccccccccccccccccCCCCccCCHHHHHHHHHHhhhhcCCCceeeEeccCcccc
Confidence 444 8999999999999998652100 00 0012222233478999999999998731 136899999986543
Q ss_pred HhhcCccHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHh-c-cCc----eEEEEEccc-cch-------------
Q 003550 554 AEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLRE-K-TSY----ELVYKVKEN-IRD------------- 613 (811)
Q Consensus 554 ~~~~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~-~-p~~----~~~~l~~~~-~~d------------- 613 (811)
. ..+.+++++|+++|+++++.+. .++|+|+|||+++|+++++ . |++ ++++++... ...
T Consensus 175 ~-~~~~~~~~~v~~~l~~~g~~~~-~~~v~i~SFd~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 252 (355)
T PRK11143 175 H-QEGKDIAAKVLEVLKKYGYTGK-DDKVYLQCFDANELKRIKNELEPKMGMDLKLVQLIAYTDWNETQEKQPDGKWVNY 252 (355)
T ss_pred c-ccchhHHHHHHHHHHHhCCCCC-CCCEEEeCCCHHHHHHHHhhcCccccCCcceEEEeccCCCcccccccccCccccc
Confidence 2 1345689999999999998531 2589999999999999988 5 874 888887421 110
Q ss_pred -h----chHhHHHHHHhhhhhccccceeecC-CccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHH
Q 003550 614 -A----LNQTIEDIKKFADSVVLSKESVYPL-NSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINT 687 (811)
Q Consensus 614 -~----~~~~l~~i~~~a~~v~~~~~~i~p~-~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~ 687 (811)
. ++..+.+++.+|+.+.+++..+.+. +..++...+++|+++|++|+.|++||||++. ++ +|+.|+......
T Consensus 253 ~~~~~~~~~~~~~~~~~a~~i~p~~~~l~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTVn~~~--~~-~~~~d~~~~~~~ 329 (355)
T PRK11143 253 NYDWMFKPGAMKEVAKYADGIGPDYHMLVDETSTPGNIKLTGMVKEAHQAKLVVHPYTVRADQ--LP-EYATDVNQLYDI 329 (355)
T ss_pred chhhhcChhhHHHHHhhceeecCChhheeeccccCCccChHHHHHHHHHcCCEEEEEEecccc--ch-hhhcChHHHHHH
Confidence 0 1234667777888888876545432 3345566779999999999999999999884 54 788887754444
Q ss_pred HHHhcCCCEEEeCChHHHHHHHHh
Q 003550 688 YYEGAGIDGVITEFPMTAARYRRN 711 (811)
Q Consensus 688 ~l~~~GVDGIiTD~P~~~~~~~~~ 711 (811)
++.++||||||||+|+++.+++++
T Consensus 330 ~~~~~GVDGIiTD~P~~~~~~l~~ 353 (355)
T PRK11143 330 LYNQAGVDGVFTDFPDKAVKFLNK 353 (355)
T ss_pred HHHccCCCEEEcCChHHHHHHHhc
Confidence 345899999999999999999854
|
|
| >cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=406.55 Aligned_cols=279 Identities=29% Similarity=0.348 Sum_probs=214.0
Q ss_pred ceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccc
Q 003550 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (811)
Q Consensus 408 plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~ 487 (811)
|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||........ +....|..
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~r~t~~~~~~~~~-------~~~~~~~~ 73 (296)
T cd08559 1 PLVIAHRGASGYAPEHTLAAYALAIEMGADYIEQDLVMTKDGVLVARHDPTLDRTTNVAEHFPFR-------GRKDTGYF 73 (296)
T ss_pred CeEEEeCCcCCCCccchHHHHHHHHHhCCCEEEEeeEEccCCCEEEeccchhhcCCCcccccccc-------ccCCCCee
Confidence 68999999999999999999999999999999999999999999999999999999955322111 12233348
Q ss_pred ccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcC----CCceEEEEecchhHHHhhcCccHHH
Q 003550 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNAN----SLSGVLISIENAVYLAEKQGMSVTN 563 (811)
Q Consensus 488 v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~----~~~gi~IEiK~~~~~~~~~g~~~~~ 563 (811)
|.++||+||++++++.|+ ......+.+.+...++||||+|+|+++++.+ +.++++||||.+.... ..+..+++
T Consensus 74 v~~~t~~eL~~l~~~~~~--~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~~~~~l~IEiK~~~~~~-~~~~~~~~ 150 (296)
T cd08559 74 VIDFTLAELKTLRAGSWF--NQRYPERAPSYYGGFKIPTLEEVIELAQGLNKSTGRNVGIYPETKHPTFHK-QEGPDIEE 150 (296)
T ss_pred eecCcHHHHhcCCCCCcc--cccccccCccccCCCCcCCHHHHHHHHHhhhhccCCcceEEEEecChhhhh-hcCCCHHH
Confidence 999999999999998763 1111112233333478999999999998742 1368999999765432 13456899
Q ss_pred HHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccch-----------hchHhHHHHHHhhhhhcc
Q 003550 564 SVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRD-----------ALNQTIEDIKKFADSVVL 631 (811)
Q Consensus 564 ~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d-----------~~~~~l~~i~~~a~~v~~ 631 (811)
.|+++|+++++.. ..++|+|+|||+++|+++|+. |+++++++++..... .....+..++.+++++++
T Consensus 151 ~v~~~l~~~~~~~-~~~~v~i~SF~~~~L~~~r~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 229 (296)
T cd08559 151 KLLEVLKKYGYTG-KNDPVFIQSFEPESLKRLRNETPDIPLVQLIDYGDWAETDKKYTYAWLTTDAGLKEIAKYADGIGP 229 (296)
T ss_pred HHHHHHHHcCCCC-CCCCEEEecCCHHHHHHHHHhCCCCcEEEEecCCCCCccccccccchhcCHHHHHHHHHHhhhhCC
Confidence 9999999998752 114899999999999999999 999999998654221 123445666667888887
Q ss_pred ccceeecCCccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhc-CCCEEEeCCh
Q 003550 632 SKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGA-GIDGVITEFP 702 (811)
Q Consensus 632 ~~~~i~p~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~-GVDGIiTD~P 702 (811)
+...+.+.........+++|+++|++|+.|++||+|++..+++++|.. ++.+++ ++ ||||||||+|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~v~~a~~~Gl~v~~WTvn~~~~~~~~~~~~----~~~~l~-~~~GVdgIiTD~P 296 (296)
T cd08559 230 WKSLIIPEDSNGLLVPTDLVKDAHKAGLLVHPYTFRNENLFLAPDFKQ----DMDALY-NAAGVDGVFTDFP 296 (296)
T ss_pred CHHhccccccccccCchHHHHHHHHcCCEEEEEEecCccccccccccc----CHHHHH-HHhCCCEEEcCCC
Confidence 665543322222334579999999999999999999977667777765 466776 77 9999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), |
| >PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=407.48 Aligned_cols=290 Identities=22% Similarity=0.320 Sum_probs=221.2
Q ss_pred CCCCEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCC
Q 003550 89 GDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVP 168 (811)
Q Consensus 89 ~~~plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~ 168 (811)
..+|+||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+|++.+.|+.+++. +|
T Consensus 24 ~~~pliiAHRGas~~~PENTl~Af~~A~~~GaD--~IE~DV~lTkDg~lVv~HD~~l~rtT~~~~~~~~~~~~---~g-- 96 (355)
T PRK11143 24 SAEKIVIAHRGASGYLPEHTLPAKAMAYAQGAD--YLEQDLVMTKDDQLVVLHDHYLDRVTDVAERFPDRARK---DG-- 96 (355)
T ss_pred CCCcEEEECCCCCCCCCcchHHHHHHHHHcCCC--EEEEeeeEccCCcEEEeCCchhcccCCccccccccccc---CC--
Confidence 458999999999999999999999999999999 99999999999999999999999999999988887654 22
Q ss_pred CCcccccccCHHhhccccccccccC--------CCCCCC--CCCcccccHHHHHHhhC--------CCceEEeeccchhh
Q 003550 169 TPGWFSIDYTLNDLSNIILNQGVYS--------RTDKFD--GNGFQILTVQDMARQIK--------PPGLWLNIQHDAFY 230 (811)
Q Consensus 169 ~~g~~v~d~t~~eL~~l~~~~~~~~--------~~~~~~--~~~~~iptL~evl~~~~--------~~~l~leiK~~~~~ 230 (811)
+|++.|+|++||++++++.++.. .+..|. ..+++||||+|+|++++ ..+++||||.+.+.
T Consensus 97 --~~~v~dlT~aEL~~ld~~~~f~~~~g~~~~~~~~~~~~~~~~~~IPTL~Evl~~~~~~~~~~~~~~~l~IEiK~~~~~ 174 (355)
T PRK11143 97 --RYYAIDFTLDEIKSLKFTEGFDIENGKKVQVYPGRFPMGKSDFRVHTFEEEIEFIQGLNHSTGKNIGIYPEIKAPWFH 174 (355)
T ss_pred --ceeEeeCcHHHHhhCCCCCCcccccccccccccccccccCCCCccCCHHHHHHHHHHhhhhcCCCceeeEeccCcccc
Confidence 46899999999999999875421 111222 01479999999999885 34699999987654
Q ss_pred hhcCchHHHHHHHHhhhcCc------eEEecCCHHHHHHHHH-hcCCC--CcceeeeecCCCcc---CC-----Ccccch
Q 003550 231 AQHNLSMRSFVLSVSRSVVV------NYISSPEVNFLRSIAA-RFRPS--MTKLVFRFLGKSEI---EP-----TTNQTY 293 (811)
Q Consensus 231 ~~~~~~~~~~l~~~lk~~~~------~~isSf~~~~L~~l~~-~~~~~--~~~lv~~~~~~~~~---~~-----~~~~~y 293 (811)
...+.++++.++++++++++ .+|+||+.+.|+++++ ..|.. +.++++++...... +. ..+..|
T Consensus 175 ~~~~~~~~~~v~~~l~~~g~~~~~~~v~i~SFd~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 254 (355)
T PRK11143 175 HQEGKDIAAKVLEVLKKYGYTGKDDKVYLQCFDANELKRIKNELEPKMGMDLKLVQLIAYTDWNETQEKQPDGKWVNYNY 254 (355)
T ss_pred cccchhHHHHHHHHHHHhCCCCCCCCEEEeCCCHHHHHHHHhhcCccccCCcceEEEeccCCCcccccccccCcccccch
Confidence 44456789999999999876 4999999999999998 55520 24777654322111 00 012234
Q ss_pred HHHh--hhHHHHHhhcccccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHH-
Q 003550 294 GSLL--KNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFI- 370 (811)
Q Consensus 294 ~~l~--~~L~~i~~~a~gi~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i- 370 (811)
..+. ..+.+++.++.++.+++..+.+.+...++..++++|++||++|++|++||||++... +|..|+ .++++++
T Consensus 255 ~~~~~~~~~~~~~~~a~~i~p~~~~l~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTVn~~~~~--~~~~d~-~~~~~~~~ 331 (355)
T PRK11143 255 DWMFKPGAMKEVAKYADGIGPDYHMLVDETSTPGNIKLTGMVKEAHQAKLVVHPYTVRADQLP--EYATDV-NQLYDILY 331 (355)
T ss_pred hhhcChhhHHHHHhhceeecCChhheeeccccCCccChHHHHHHHHHcCCEEEEEEeccccch--hhhcCh-HHHHHHHH
Confidence 4432 246677778999988776554432334556667999999999999999999987432 454555 5666654
Q ss_pred -HcCCCccCeEeccCCCCcchhhh
Q 003550 371 -DNGDFSVDGVLSDFPLTPSAAVD 393 (811)
Q Consensus 371 -~~G~~~VDgIiTD~P~~a~~~~~ 393 (811)
+.| |||||||+|+++.+++.
T Consensus 332 ~~~G---VDGIiTD~P~~~~~~l~ 352 (355)
T PRK11143 332 NQAG---VDGVFTDFPDKAVKFLN 352 (355)
T ss_pred HccC---CCEEEcCChHHHHHHHh
Confidence 889 99999999999887764
|
|
| >cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=403.97 Aligned_cols=293 Identities=15% Similarity=0.149 Sum_probs=225.8
Q ss_pred CCCEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCC-CCCCCcchhh--hhcccccccccCC
Q 003550 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDL-KLDNASNIAQ--IFKTQQKNYLVNG 166 (811)
Q Consensus 90 ~~plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~-~l~rtT~~~~--~~~~~~~~y~~~G 166 (811)
..++||||||+++.+||||++||+.|+++|+| +||||||+||||++||+||. +|+||||+.+ .|++++++..++|
T Consensus 15 ~~~~iIAHRGasg~~PEnTl~Af~~Ai~~Gad--~IE~DV~lTkDg~lVV~HD~~~L~rtTnv~~~pe~a~r~~~~~~~g 92 (356)
T cd08560 15 KTDFSIGHRGAPLQFPEHTRESYEAAARMGAG--ILECDVTFTKDRELVCRHSQCDLHTTTNILAIPELAAKCTQPFTPA 92 (356)
T ss_pred CCceEEEcCCCCCCCCcchHHHHHHHHHcCCC--EEEEEeeEccCCcEEEECCCccccCccCCccccchhhhcccccccc
Confidence 35789999999999999999999999999999 99999999999999999997 8999999987 5899999988888
Q ss_pred CC----CCcccccccCHHhhccccccccc----------------cCCCCCCCCCCcccccHHHHHHhhCC--CceEEee
Q 003550 167 VP----TPGWFSIDYTLNDLSNIILNQGV----------------YSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNI 224 (811)
Q Consensus 167 ~~----~~g~~v~d~t~~eL~~l~~~~~~----------------~~~~~~~~~~~~~iptL~evl~~~~~--~~l~lei 224 (811)
++ ..+|++.|||++||++|+.++.. .+++..|++ .++||||+|+|++++. .++++||
T Consensus 93 ~~~~~~~~~~~v~d~TlaELk~L~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~IPTL~Evl~lv~~~~v~l~iEi 171 (356)
T cd08560 93 NATKPASAECCTSDITLAEFKSLCGKMDASNPSATTPEEYQNGTPDWRTDLYAT-CGTLMTHKESIALFKSLGVKMTPEL 171 (356)
T ss_pred ccccccccCcchhhCcHHHHhcCCCccccccccccccccccccccccccccccC-CCCCCCHHHHHHHHHhcCceEEEEe
Confidence 76 56799999999999999876321 123344555 5799999999999964 6899999
Q ss_pred ccchhhhhc-----CchHHHHHHHHhhhcCc----eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHH
Q 003550 225 QHDAFYAQH-----NLSMRSFVLSVSRSVVV----NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGS 295 (811)
Q Consensus 225 K~~~~~~~~-----~~~~~~~l~~~lk~~~~----~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~ 295 (811)
|++.+.... ...++..++++++++++ ++||||+++.|+++++..|....+++++ .+... +. ...+.+
T Consensus 172 K~~~~~~~~~g~~~~~~~~~~l~~~l~~~g~~~~~v~iqSFd~~~L~~~~~~~p~~~~~l~~l-~~~~~--~~-~~~~~~ 247 (356)
T cd08560 172 KSPSVPMPFDGNYTQEDYAQQMIDEYKEAGVPPSRVWPQSFNLDDIFYWIKNEPDFGRQAVYL-DDRDD--TA-DFPATW 247 (356)
T ss_pred CCCcccccccccccHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHHHHhCCCCCeeEEEE-ccCCc--cc-cccccH
Confidence 987753321 12588899999999875 4999999999999999887433344542 22211 10 011222
Q ss_pred HhhhHHHH-HhhcccccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCC-Cc--c-cCC---------CCC
Q 003550 296 LLKNLTFI-KTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDI-PI--S-FNY---------SYD 361 (811)
Q Consensus 296 l~~~L~~i-~~~a~gi~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~-~~--~-~~~---------~~D 361 (811)
+ ..++++ ..++++|++++.++.+.+.+ ....++++|++||++||+|++|||+++- .. . ++| ..|
T Consensus 248 ~-~~l~~i~a~~a~~i~P~~~~l~~~~~~-~~~~~~~~v~~Ah~~GL~V~~WTvr~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (356)
T cd08560 248 S-PSMDELKARGVNIIAPPIWMLVDPDEN-GKIVPSEYAKAAKAAGLDIITWTLERSGPLASGGGWYYQTIEDVINNDGD 325 (356)
T ss_pred H-HHHHHHHhCCccEecCchhhccccccc-cccCCHHHHHHHHHcCCEEEEEEeecCcccccCccccccccccccccccc
Confidence 2 356777 45688999998887765332 2335688999999999999999998752 21 1 222 233
Q ss_pred hHHHHHHHH-HcCCCccCeEeccCCCCcchhhhh
Q 003550 362 PLTEYLSFI-DNGDFSVDGVLSDFPLTPSAAVDC 394 (811)
Q Consensus 362 ~~~e~~~~i-~~G~~~VDgIiTD~P~~a~~~~~~ 394 (811)
-..++..++ +.| ||||+||+|+++..+.+|
T Consensus 326 ~~~~~~~~~~~~G---vDGvftD~p~~~~~~~~~ 356 (356)
T cd08560 326 MYNVLDVLARDVG---ILGIFSDWPATVTYYANC 356 (356)
T ss_pred HHHHHHHHHHhcC---CCEEEccCCCceeEecCC
Confidence 346777666 788 999999999999888776
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=400.64 Aligned_cols=279 Identities=26% Similarity=0.342 Sum_probs=216.5
Q ss_pred CEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCc
Q 003550 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (811)
Q Consensus 92 plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g 171 (811)
|+||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+||+.+.|++++++ +| +
T Consensus 1 ~lviAHRG~s~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~---~g----~ 71 (318)
T cd08600 1 KIIIAHRGASGYLPEHTLEAKALAYAQGAD--YLEQDVVLTKDDKLVVIHDHYLDNVTNVAEKFPDRKRK---DG----R 71 (318)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCC--EEEeeeeECcCCcEEEeCCchhhccCCccccccccccc---CC----c
Confidence 689999999999999999999999999999 99999999999999999999999999999988887755 23 4
Q ss_pred ccccccCHHhhccccccccccCC--------CCCC---CCCCcccccHHHHHHhhC--------CCceEEeeccchhhhh
Q 003550 172 WFSIDYTLNDLSNIILNQGVYSR--------TDKF---DGNGFQILTVQDMARQIK--------PPGLWLNIQHDAFYAQ 232 (811)
Q Consensus 172 ~~v~d~t~~eL~~l~~~~~~~~~--------~~~~---~~~~~~iptL~evl~~~~--------~~~l~leiK~~~~~~~ 232 (811)
|++.|+|++||+++++++++..+ +..| .+ .++||||+|+|++++ ..+++||||.+.++.+
T Consensus 72 ~~v~dlT~aEL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~-~~~IptL~evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~ 150 (318)
T cd08600 72 YYVIDFTLDELKSLSVTERFDIENGKKVQVYPNRFPLWKS-DFKIHTLEEEIELIQGLNKSTGKNVGIYPEIKAPWFHHQ 150 (318)
T ss_pred eeEeeCcHHHHhhCCCCCCcccccccccccccccCcccCC-CCccCCHHHHHHHHHHhhhhcCCcceEEEeecCchhhhh
Confidence 68999999999999999876332 1112 12 479999999999875 3579999998765544
Q ss_pred cCchHHHHHHHHhhhcCc------eEEecCCHHHHHHHHH-hcCC--CCcceeeeecCCCccCC-------CcccchHHH
Q 003550 233 HNLSMRSFVLSVSRSVVV------NYISSPEVNFLRSIAA-RFRP--SMTKLVFRFLGKSEIEP-------TTNQTYGSL 296 (811)
Q Consensus 233 ~~~~~~~~l~~~lk~~~~------~~isSf~~~~L~~l~~-~~~~--~~~~lv~~~~~~~~~~~-------~~~~~y~~l 296 (811)
.+..+++.++++++++++ ++||||+++.|+++++ ..|+ ...++++++......+. +.+.+|+.+
T Consensus 151 ~~~~~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (318)
T cd08600 151 EGKDIAAATLEVLKKYGYTSKNDKVYLQTFDPNELKRIKNELLPKMGMDLKLVQLIAYTDWGETQEKDPGGWVNYDYDWM 230 (318)
T ss_pred ccccHHHHHHHHHHHcCCCCCCCeEEEEeCCHHHHHHHHHhhCccccCCcceEEEeccCCCCcccccccCCccccchhhh
Confidence 456799999999999876 5999999999999997 6651 13677765431111100 123357665
Q ss_pred h--hhHHHHHhhcccccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHH-HH-HHHc
Q 003550 297 L--KNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEY-LS-FIDN 372 (811)
Q Consensus 297 ~--~~L~~i~~~a~gi~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~-~~-~i~~ 372 (811)
. ..+..++.++.++.+++.++.+.+...+....+++|++||++|++|++||||++....+. .|. .++ .. +++.
T Consensus 231 ~~~~~l~~~~~~a~~i~~~~~~l~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~~~~~~~--~~~-~~~~~~~l~~~ 307 (318)
T cd08600 231 FTKGGLKEIAKYADGVGPWYSMIIEEKSSKGNIVLTDLVKDAHEAGLEVHPYTVRKDALPEYA--KDA-DQLLDALLNKA 307 (318)
T ss_pred cCHHHHHHHHHhheeccCCHHHcccccCCCCccChHHHHHHHHHcCCEEEEEeccCCcccccc--CCH-HHHHHHHHHhc
Confidence 3 257778889999999988876654333445567899999999999999999987543333 233 333 22 4788
Q ss_pred CCCccCeEeccCCC
Q 003550 373 GDFSVDGVLSDFPL 386 (811)
Q Consensus 373 G~~~VDgIiTD~P~ 386 (811)
| |||||||+|+
T Consensus 308 G---VDGiiTD~P~ 318 (318)
T cd08600 308 G---VDGVFTDFPD 318 (318)
T ss_pred C---CcEEEcCCCC
Confidence 8 9999999995
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP |
| >cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=387.99 Aligned_cols=274 Identities=29% Similarity=0.400 Sum_probs=211.6
Q ss_pred CEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCc
Q 003550 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (811)
Q Consensus 92 plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g 171 (811)
|+||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+||+..+++.. |....|
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~l~r~t~~~~~~~~~-------~~~~~~ 71 (296)
T cd08559 1 PLVIAHRGASGYAPEHTLAAYALAIEMGAD--YIEQDLVMTKDGVLVARHDPTLDRTTNVAEHFPFR-------GRKDTG 71 (296)
T ss_pred CeEEEeCCcCCCCccchHHHHHHHHHhCCC--EEEEeeEEccCCCEEEeccchhhcCCCcccccccc-------ccCCCC
Confidence 789999999999999999999999999999 99999999999999999999999999998766653 445556
Q ss_pred ccccccCHHhhccccccccccC----CCCCCCCCCcccccHHHHHHhhCC--------CceEEeeccchhhhhcCchHHH
Q 003550 172 WFSIDYTLNDLSNIILNQGVYS----RTDKFDGNGFQILTVQDMARQIKP--------PGLWLNIQHDAFYAQHNLSMRS 239 (811)
Q Consensus 172 ~~v~d~t~~eL~~l~~~~~~~~----~~~~~~~~~~~iptL~evl~~~~~--------~~l~leiK~~~~~~~~~~~~~~ 239 (811)
+.+.++|++||++++++.++.. +.+.+.. +++||||+|+|++++. .+++||||.+......+..+++
T Consensus 72 ~~v~~~t~~eL~~l~~~~~~~~~~~~~~~~~~~-~~~iptL~evl~~~~~~~~~~~~~~~l~IEiK~~~~~~~~~~~~~~ 150 (296)
T cd08559 72 YFVIDFTLAELKTLRAGSWFNQRYPERAPSYYG-GFKIPTLEEVIELAQGLNKSTGRNVGIYPETKHPTFHKQEGPDIEE 150 (296)
T ss_pred eeeecCcHHHHhcCCCCCcccccccccCccccC-CCCcCCHHHHHHHHHhhhhccCCcceEEEEecChhhhhhcCCCHHH
Confidence 6899999999999999865421 1122222 4799999999999854 5699999987644344567889
Q ss_pred HHHHHhhhcCc------eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhh--hHHHHHhhccccc
Q 003550 240 FVLSVSRSVVV------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLK--NLTFIKTFASGIL 311 (811)
Q Consensus 240 ~l~~~lk~~~~------~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~--~L~~i~~~a~gi~ 311 (811)
.++++++++++ .+|+||+.+.|+++++..| +.++++++.............|+.+.. .+..++.++.++.
T Consensus 151 ~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~r~~~p--~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 228 (296)
T cd08559 151 KLLEVLKKYGYTGKNDPVFIQSFEPESLKRLRNETP--DIPLVQLIDYGDWAETDKKYTYAWLTTDAGLKEIAKYADGIG 228 (296)
T ss_pred HHHHHHHHcCCCCCCCCEEEecCCHHHHHHHHHhCC--CCcEEEEecCCCCCccccccccchhcCHHHHHHHHHHhhhhC
Confidence 99999998864 4999999999999999998 678887553322111111223333322 4555666788888
Q ss_pred CCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCC-CCcccCCCCChHHHHHHHHHc-CCCccCeEeccCC
Q 003550 312 VPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLSFIDN-GDFSVDGVLSDFP 385 (811)
Q Consensus 312 ~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~-~~~~~~~~~D~~~e~~~~i~~-G~~~VDgIiTD~P 385 (811)
+++.++..... .....++++|++||++|++|++||||++ ...+++| .++|+++++. | |||||||+|
T Consensus 229 ~~~~~~~~~~~-~~~~~~~~~v~~a~~~Gl~v~~WTvn~~~~~~~~~~----~~~~~~l~~~~G---VdgIiTD~P 296 (296)
T cd08559 229 PWKSLIIPEDS-NGLLVPTDLVKDAHKAGLLVHPYTFRNENLFLAPDF----KQDMDALYNAAG---VDGVFTDFP 296 (296)
T ss_pred CCHHhcccccc-ccccCchHHHHHHHHcCCEEEEEEecCccccccccc----ccCHHHHHHHhC---CCEEEcCCC
Confidence 87776653221 2334447899999999999999999985 3444444 3889999998 9 999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), |
| >cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-44 Score=379.64 Aligned_cols=250 Identities=22% Similarity=0.230 Sum_probs=196.8
Q ss_pred eeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCccccc
Q 003550 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFS 488 (811)
Q Consensus 409 lIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v 488 (811)
+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|++. .+| .|
T Consensus 2 ~iiaHRG~~~~~pENT~~af~~A~~~G~d~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~----------------~~g-~v 64 (256)
T cd08601 2 AVIAHRGASGYAPEHTFAAYDLAREMGADYIELDLQMTKDGVLVAMHDETLDRTTNIE----------------RPG-PV 64 (256)
T ss_pred ceEEcCCCCCCCCCchHHHHHHHHHcCCCEEEEEeeECCCCeEEEeCCCccccccCCC----------------CCc-ee
Confidence 6899999999999999999999999999999999999999999999999999999831 056 79
Q ss_pred cCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHH
Q 003550 489 FSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEA 568 (811)
Q Consensus 489 ~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~ 568 (811)
.++||+||++++.+.++. ..+...++..+.+ +++|||+|+|++++++ .+++||||.+... ..+++.+.++
T Consensus 65 ~~~t~~el~~l~~~~~~~-~~~~~~~~~~~~~-~~iptL~evl~~~~~~---~~l~IEiK~~~~~-----~~~~~~v~~~ 134 (256)
T cd08601 65 KDYTLAEIKQLDAGSWFN-KAYPEYARESYSG-LKVPTLEEVIERYGGR---ANYYIETKSPDLY-----PGMEEKLLAT 134 (256)
T ss_pred ecCcHHHHHhcCCCcccc-ccCccccccccCC-ccCCCHHHHHHHhccC---ceEEEEeeCCCCC-----CCHHHHHHHH
Confidence 999999999999876531 1111112233333 7899999999999875 5899999965432 1477899999
Q ss_pred HHhcCCCCCC--CcEEEEEeCChHHHHHHHhc-cCceEEEEEcccc-chhchHhHHHHHHhhhhhccccceeecCCcccc
Q 003550 569 LGNAGYNKQT--ALKVMIQSTDSSVLMKLREK-TSYELVYKVKENI-RDALNQTIEDIKKFADSVVLSKESVYPLNSAFI 644 (811)
Q Consensus 569 L~~~g~~~~~--~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~-~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l 644 (811)
++++++..+. .++|+|+||++.+|++++++ |+++++++++... .......++.++.++.++++.. .
T Consensus 135 l~~~~~~~~~~~~~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 204 (256)
T cd08601 135 LDKYGLLTDNLKNGQVIIQSFSKESLKKLHQLNPNIPLVQLLWYGEGAETYDKWLDEIKEYAIGIGPSI----------A 204 (256)
T ss_pred HHHcCCCcccCCCCCEEEecCCHHHHHHHHHhCCCCcEEEEeccCcccccchhHHHHHHhcCeEeCCch----------h
Confidence 9999886211 15999999999999999998 9999999986432 1112233444444444444321 1
Q ss_pred CCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHHHHHH
Q 003550 645 TSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYR 709 (811)
Q Consensus 645 ~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~~~~~ 709 (811)
...+++|+.+|++|+.|++||+|+.. ++..++ ++||||||||+|+.+.+++
T Consensus 205 ~~~~~~v~~~~~~g~~v~~wTvn~~~-------------~~~~l~-~~Gvd~IiTD~p~~~~~~~ 255 (256)
T cd08601 205 DADPWMVHLIHKKGLLVHPYTVNEKA-------------DMIRLI-NWGVDGMFTNYPDRLKEVL 255 (256)
T ss_pred hcCHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-hcCCCEEEeCCHHHHHHhh
Confidence 23578999999999999999999874 688887 9999999999999998875
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-44 Score=378.58 Aligned_cols=238 Identities=19% Similarity=0.164 Sum_probs=180.6
Q ss_pred ceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccc
Q 003550 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (811)
Q Consensus 408 plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~ 487 (811)
|+||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|| ++| .
T Consensus 1 p~viaHRG~~~~~PENTl~Af~~A~~~G~d~iE~DV~lTkDg~lVv~HD~~l~R~t~------------------~~g-~ 61 (263)
T cd08580 1 PLIVAHRGGTADAPENTLLAISKALANGADAIWLTVQLSKDGVPVLYRPSDLKSLTN------------------GSG-A 61 (263)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCCEEEEEeEECCCCCEEEeCCCchhcccC------------------CCC-C
Confidence 579999999999999999999999999999999999999999999999999999999 667 8
Q ss_pred ccCCCHHHHhccCccccCCcccccccCCcCCCCC-CCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHH
Q 003550 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNA-GKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVM 566 (811)
Q Consensus 488 v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~-~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~ 566 (811)
|.++||+||++|+++.++.- .. ...|.+. ++||||+|+|+++++. .++||||..... .+++.|+
T Consensus 62 v~~~t~~el~~ld~g~~~~~----~~-~~~~~~~~~~iPtL~evl~~~~~~----~l~iEiK~~~~~------~~~~~v~ 126 (263)
T cd08580 62 VSAYTAAQLATLNAGYNFKP----EG-GYPYRGKPVGIPTLEQVLRAFPDT----PFILDMKSLPAD------PQAKAVA 126 (263)
T ss_pred hhhCcHHHHhcCCCcccccc----cc-CcccCCCCCcCccHHHHHHhhcCC----eEEEEECCCCcH------HHHHHHH
Confidence 99999999999999876421 00 1123332 4899999999999763 799999975421 3788999
Q ss_pred HHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cC-------ceEEEEEccccch---hc----h-------HhHHHHHH
Q 003550 567 EALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TS-------YELVYKVKENIRD---AL----N-------QTIEDIKK 624 (811)
Q Consensus 567 ~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~-------~~~~~l~~~~~~d---~~----~-------~~l~~i~~ 624 (811)
++|+++++. ++|+|+|||+.+|+.+++. |+ +.++++.+..... .. . ..+..+..
T Consensus 127 ~~i~~~~~~----~~v~v~SF~~~~l~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (263)
T cd08580 127 RVLERENAW----SRVRIYSTNADYQDALAPYPQARLFESRDVTRTRLANVAMAHQCDLPPDSGAWAGFELRRKVTVVET 202 (263)
T ss_pred HHHHhcCCC----CCEEEEECCHHHHHHHHhcCcccccccHHHHHHHHHhhhcccccccCccchhhccccccccchheee
Confidence 999999987 7999999999999999998 85 2222222110000 00 0 00000000
Q ss_pred hhhhhccccceeecCCccccCCCHHHHHHHHHc-CCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChH
Q 003550 625 FADSVVLSKESVYPLNSAFITSATDIVQRLQSF-KLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPM 703 (811)
Q Consensus 625 ~a~~v~~~~~~i~p~~~~~l~~~~~~V~~~~~~-Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~ 703 (811)
+ ......+.+ .+...++++|+++|++ |++|++||+|++. ++.+++ ++||||||||+|+
T Consensus 203 ~----~~~~~~~~~---~~~l~t~~~V~~~h~~~gl~V~~WTVN~~~-------------~~~~l~-~~GVDgIiTD~P~ 261 (263)
T cd08580 203 F----TLGEGRSPV---QATLWTPAAVDCFRRNSKVKIVLFGINTAD-------------DYRLAK-CLGADAVMVDSPA 261 (263)
T ss_pred e----ccccccccc---ccccCCHHHHHHHHhcCCcEEEEEEeCCHH-------------HHHHHH-HcCCCEEEeCCcc
Confidence 0 011011111 2224568999999999 9999999999885 688887 9999999999997
Q ss_pred H
Q 003550 704 T 704 (811)
Q Consensus 704 ~ 704 (811)
.
T Consensus 262 ~ 262 (263)
T cd08580 262 A 262 (263)
T ss_pred c
Confidence 5
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated. |
| >cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-43 Score=365.05 Aligned_cols=228 Identities=14% Similarity=0.154 Sum_probs=177.0
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccccc
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~ 489 (811)
||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|+ ++| .+.
T Consensus 1 iiaHRG~~~~~PENTl~Af~~A~~~gad~iE~DV~lTkDg~~Vv~HD~~l~r~t~------------------~~~-~v~ 61 (229)
T cd08581 1 LVAHRGYPARYPENTLVGFRAAVDAGARFVEFDVQLSADGVPVVFHDDTLLRLTG------------------VEG-LLH 61 (229)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHcCCCEEEEeeeECCCCcEEEECCCccccccC------------------CCc-eec
Confidence 6899999999999999999999999999999999999999999999999999998 566 899
Q ss_pred CCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHH
Q 003550 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (811)
Q Consensus 490 dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L 569 (811)
++||+||++++......|+ ..+.+ ++||||+|+|+++++.. ..+++||+|.+.... ..+.+.+.+++
T Consensus 62 ~~t~~el~~l~~~~~~~~~-------~~~~~-~~iptL~evl~~~~~~~-~~~l~iEiK~~~~~~----~~~~~~v~~~~ 128 (229)
T cd08581 62 ELEDAELDSLRVAEPARFG-------SRFAG-EPLPSLAAVVQWLAQHP-QVTLFVEIKTESLDR----FGLERVVDKVL 128 (229)
T ss_pred cCCHHHHhhcccccCcccc-------cccCC-ccCCCHHHHHHHHhhCC-CceEEEEecCCcccc----cchhHHHHHHH
Confidence 9999999999875433221 33444 79999999999998731 268999999765321 12444555666
Q ss_pred HhcC-CCCCCCcEEEEEeCChHHHHHHHhccCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccCCCH
Q 003550 570 GNAG-YNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648 (811)
Q Consensus 570 ~~~g-~~~~~~~~ViiqSfd~~~L~~lk~~p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~ 648 (811)
+..+ +. ++++|+|||+.+|+++|+.|.+++++++.... ... ...+..+++ .++.+... + .
T Consensus 129 ~~~~~~~----~~~~i~SF~~~~l~~~r~~~~~~~~~l~~~~~----~~~----~~~~~~~~~--~~~~~~~~--~--~- 189 (229)
T cd08581 129 RALPAVA----AQRVLISFDYDLLALAKQQGGPRTGWVLPDWD----DAS----LAEADELQP--DYLFCDKN--L--L- 189 (229)
T ss_pred HHHHhcc----CCeEEEeCCHHHHHHHHhcCCCCeEEEeccCC----hHH----HHHHHhhCC--CEEecccc--c--C-
Confidence 6554 43 68999999999999999998899999875321 111 122333333 23333211 1 1
Q ss_pred HHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCCh
Q 003550 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (811)
Q Consensus 649 ~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P 702 (811)
..++++|++|++|++||+|++. ++.+++ ++||||||||+|
T Consensus 190 ~~v~~~~~~G~~v~vWTVn~~~-------------~~~~l~-~~GVdgiiTD~P 229 (229)
T cd08581 190 PDTGDLWAGTWKWVIYEVNEPA-------------EALALA-ARGVALIETDNI 229 (229)
T ss_pred hhhHHHHhCCceEEEEEcCCHH-------------HHHHHH-HhCCcEEEcCCC
Confidence 3588899999999999999884 688887 999999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=377.17 Aligned_cols=254 Identities=17% Similarity=0.242 Sum_probs=190.6
Q ss_pred cccceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCc
Q 003550 405 SANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGS 484 (811)
Q Consensus 405 ~~~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~ 484 (811)
...++||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| ++
T Consensus 24 ~~~~~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVV~HD~~l~Rtt~------------------~~ 85 (300)
T cd08612 24 PFPCRHISHRGGSGENLENTMEAFEHAVKVGTDMLELDVHLTKDGQVVVSHDENLLRSCG------------------VD 85 (300)
T ss_pred CCCCCEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeECcCCeEEEECCccccccCC------------------CC
Confidence 457899999999999999999999999999999999999999999999999999999999 66
Q ss_pred cccccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHH
Q 003550 485 GIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNS 564 (811)
Q Consensus 485 G~~v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~ 564 (811)
| .|.++||+||++++.+....+. .+....+.+.+ ++||||+|+|+++++ ..++||||.+.. .+++.
T Consensus 86 g-~V~~~t~~eL~~l~~~~~~~~~-~~~~~~~~~~g-~~IPtL~EvL~~~~~----~~lnIEiK~~~~-------~~~~~ 151 (300)
T cd08612 86 K-LVSDLNYADLPPYLEKLEVTFS-PGDYCVPKGSD-RRIPLLEEVFEAFPD----TPINIDIKVEND-------ELIKK 151 (300)
T ss_pred c-ccccCCHHHHhhcccccccccc-CCccccccCCC-CCCCCHHHHHHhCCC----CeEEEEECCCch-------HHHHH
Confidence 7 8999999999999654211010 00111233444 799999999999854 489999997531 27789
Q ss_pred HHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchh-------------chHhH------HHHHH
Q 003550 565 VMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDA-------------LNQTI------EDIKK 624 (811)
Q Consensus 565 v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~-------------~~~~l------~~i~~ 624 (811)
++++++++++. ++|+|+|||+++|.++++. |+++++++++...... ....+ ...+.
T Consensus 152 v~~~i~~~~~~----~~v~isSF~~~~L~~~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (300)
T cd08612 152 VSDLVRKYKRE----DITVWGSFNDEIVKKCHKENPNIPLFFSLKRVLLLLLLYYTGLLPFIPIKESFLEIPMPSIFLKT 227 (300)
T ss_pred HHHHHHHcCCC----CcEEEEeCCHHHHHHHHHhCCCccEEechHHHHHHHHHHHcccCccccCccccccccchhhhhhh
Confidence 99999999987 7999999999999999999 9999998764310000 00000 00000
Q ss_pred hhhh--hccccceeecCCccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCCh
Q 003550 625 FADS--VVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (811)
Q Consensus 625 ~a~~--v~~~~~~i~p~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P 702 (811)
+... ........++. .+...++++|+++|++|+.|++||+|++. ++.+++ ++||||||||+|
T Consensus 228 ~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~G~~v~vWTVNd~~-------------~~~~l~-~~GVdgIiTD~P 291 (300)
T cd08612 228 YFPKSMSRLNRFVLFLI--DWLLMRPSLFRHLQKRGIQVYGWVLNDEE-------------EFERAF-ELGADGVMTDYP 291 (300)
T ss_pred cccccccccccceeccc--ccccCCHHHHHHHHHCCCEEEEeecCCHH-------------HHHHHH-hcCCCEEEeCCH
Confidence 0000 00000001111 12334789999999999999999999884 688887 899999999999
Q ss_pred HHHHHHHH
Q 003550 703 MTAARYRR 710 (811)
Q Consensus 703 ~~~~~~~~ 710 (811)
+.+.+++.
T Consensus 292 ~~l~~~l~ 299 (300)
T cd08612 292 TKLREFLD 299 (300)
T ss_pred HHHHHHHh
Confidence 99988763
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family. |
| >PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=364.31 Aligned_cols=238 Identities=17% Similarity=0.096 Sum_probs=183.6
Q ss_pred ccceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcc
Q 003550 406 ANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSG 485 (811)
Q Consensus 406 ~~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G 485 (811)
..|.||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|+ ++|
T Consensus 6 ~~~~iiaHRG~~~~~pENT~~Af~~A~~~G~d~vE~DV~lT~Dg~lVV~HD~~l~R~t~------------------~~~ 67 (249)
T PRK09454 6 PYPRIVAHRGGGKLAPENTLAAIDVGARYGHRMIEFDAKLSADGEIFLLHDDTLERTSN------------------GWG 67 (249)
T ss_pred CCCeEEECCCCCCCCChHHHHHHHHHHHcCCCEEEEEeeECCCCCEEEECCCcccccCC------------------CCC
Confidence 46899999999999999999999999999999999999999999999999999999999 566
Q ss_pred ccccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHH
Q 003550 486 IFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSV 565 (811)
Q Consensus 486 ~~v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v 565 (811)
.|.++||+||++++.+.+. .+.+.+ ++||||+|+|+++++. ...++||+|....... .+...+
T Consensus 68 -~v~~~t~~el~~l~~~~~~---------~~~~~~-~~iPtL~evl~~~~~~--~~~l~iEiK~~~~~~~----~~~~~v 130 (249)
T PRK09454 68 -VAGELTWQDLAQLDAGSWF---------SAAFAG-EPLPTLSQVAARCRAH--GMAANIEIKPTTGREA----ETGRVV 130 (249)
T ss_pred -chhhCCHHHHHhcCCCCcc---------CCCCCC-CcCCCHHHHHHHHHhc--CCEEEEEECCCCCcch----hHHHHH
Confidence 7999999999999998653 133444 7899999999999764 2579999995432111 123333
Q ss_pred HHHHHhc--CCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCcc
Q 003550 566 MEALGNA--GYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSA 642 (811)
Q Consensus 566 ~~~L~~~--g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~ 642 (811)
..+++.. ++. ++++|+||++.+|.++++. |+++++++++....+. .....+ +.. ..+.+.
T Consensus 131 ~~~~~~~~~~~~----~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~----~~~~~~----~~~--~~~~~~--- 193 (249)
T PRK09454 131 ALAARALWAGAA----VPPLLSSFSEDALEAARQAAPELPRGLLLDEWPDDW----LELTRR----LGC--VSLHLN--- 193 (249)
T ss_pred HHHHHHHhcCCC----CCEEEEeCCHHHHHHHHHhCCCCcEEEEeccccccH----HHHHHh----cCC--eEEecc---
Confidence 3333333 333 5899999999999999998 9999999986421111 111111 111 112221
Q ss_pred ccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHHHHHH
Q 003550 643 FITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYR 709 (811)
Q Consensus 643 ~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~~~~~ 709 (811)
+...++++++++|++|++|++||+|++. ++..++ ++||||||||+|+.+..++
T Consensus 194 ~~~~~~~~v~~~~~~g~~v~~WTvn~~~-------------~~~~l~-~~GVdgIiTD~p~~~~~~~ 246 (249)
T PRK09454 194 HKLLDEARVAALKAAGLRILVYTVNDPA-------------RARELL-RWGVDCICTDRIDLIGPDF 246 (249)
T ss_pred cccCCHHHHHHHHHCCCEEEEEeCCCHH-------------HHHHHH-HcCCCEEEeCChHhcCccc
Confidence 1224679999999999999999999884 578777 9999999999999887655
|
|
| >cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=364.48 Aligned_cols=243 Identities=18% Similarity=0.231 Sum_probs=179.5
Q ss_pred cceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCccc
Q 003550 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGI 486 (811)
Q Consensus 407 ~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~ 486 (811)
+|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||.... ++.+ ..|
T Consensus 1 ~~~iiAHRG~~~~aPENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVV~HD~~l~Rtt~~~g~-~~~~---------~~~- 69 (252)
T cd08574 1 KPALIGHRGAPMLAPENTLMSFEKALEHGVYGLETDVTISYDGVPFLMHDRTLRRTTNVADV-FPER---------AHE- 69 (252)
T ss_pred CCeEEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEEeEccCCcEEEeCCCcccccCCCCcc-cccc---------ccc-
Confidence 47899999999999999999999999999999999999999999999999999999994431 1111 123
Q ss_pred cccCCCHHHHhccCccccCC----cccc-cc--cCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCc
Q 003550 487 FSFSLIWDEIQTLIPQISNP----YFKF-KL--FRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGM 559 (811)
Q Consensus 487 ~v~dlT~~ELk~L~~~~~~p----~~~~-~~--~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~ 559 (811)
.+.++||+||++|+++.|+. +... .. .....+.+ ++||||+|+|+++++.+ ..++||||.+..... ...
T Consensus 70 ~v~~~T~~eL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~~~-~~IPtL~evl~~~~~~~--~~l~iEiK~~~~~~~-~~~ 145 (252)
T cd08574 70 RASMFTWTDLQQLNAGQWFLKDDPFWTASSLSESDREEAGN-QSIPSLAELLRLAKKHN--KSVIFDLRRPPPNHP-YYQ 145 (252)
T ss_pred chhcCCHHHHhhCCCCCcccCCCccchhcccccchhhhcCC-CCCCCHHHHHHHHHHcC--CeEEEEecCCcccCc-cHH
Confidence 68999999999999997631 0000 00 00013344 79999999999999752 579999996542100 112
Q ss_pred cHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHH-hhhhhccccceee
Q 003550 560 SVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKK-FADSVVLSKESVY 637 (811)
Q Consensus 560 ~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~-~a~~v~~~~~~i~ 637 (811)
.+++.++++++++++. .+++++||+.. ++.+|+. |+++++++.... ...++. -++.+.
T Consensus 146 ~~~~~v~~~l~~~~~~----~~~v~~s~~~~-~~~~~~~~p~~~~~~~~~~~--------~~~~~~~~~~~~~------- 205 (252)
T cd08574 146 SYVNITLDTILASGIP----QHQVFWLPDEY-RALVRKVAPGFQQVSGRKLP--------VESLRENGISRLN------- 205 (252)
T ss_pred HHHHHHHHHHHHcCCC----cccEEEccHHH-HHHHHHHCCCCeEeeccccc--------hHHHHhcCCeEEc-------
Confidence 4788999999999986 45666666654 7999998 999988754321 111211 122222
Q ss_pred cCCccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCC
Q 003550 638 PLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (811)
Q Consensus 638 p~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~ 701 (811)
+. +....+++|+.+|++|+.|++||+|++. ++.+++ ++||||||||-
T Consensus 206 ~~---~~~~~~~~v~~~~~~g~~v~~WTVn~~~-------------~~~~l~-~~GVdgIiTD~ 252 (252)
T cd08574 206 LE---YSQLSAQEIREYSKANISVNLYVVNEPW-------------LYSLLW-CSGVQSVTTNA 252 (252)
T ss_pred cC---cccCCHHHHHHHHHCCCEEEEEccCCHH-------------HHHHHH-HcCCCEEecCc
Confidence 22 1124578999999999999999999884 688887 99999999993
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo |
| >cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=357.23 Aligned_cols=228 Identities=23% Similarity=0.235 Sum_probs=182.6
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccccc
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~ 489 (811)
||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|+ ++| .+.
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~gad~iE~Dv~~TkDg~lvv~HD~~l~r~t~------------------~~~-~i~ 61 (229)
T cd08562 1 IIAHRGASSLAPENTLAAFRAAAELGVRWVEFDVKLSGDGTLVLIHDDTLDRTTN------------------GSG-AVT 61 (229)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEEeECCCCCEEEEcCCCCccccC------------------CCc-eee
Confidence 6999999999999999999999999999999999999999999999999999998 556 899
Q ss_pred CCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHH
Q 003550 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (811)
Q Consensus 490 dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L 569 (811)
++||+||++++.+.+. ++.+.+ +++|||+|+|+++++.+ ..++||+|..... ...+++.|.+++
T Consensus 62 ~lt~~el~~l~~~~~~---------~~~~~~-~~iptl~evl~~~~~~~--~~l~iEiK~~~~~----~~~~~~~v~~~l 125 (229)
T cd08562 62 ELTWAELAQLDAGSWF---------SPEFAG-EPIPTLADVLELARELG--LGLNLEIKPDPGD----EALTARVVAAAL 125 (229)
T ss_pred cCcHHHHhhcCCCccc---------CCCCCC-CCCCCHHHHHHHHHhcC--CEEEEEECCCCCc----cHHHHHHHHHHH
Confidence 9999999999987542 233333 78999999999998752 6899999965432 123677899999
Q ss_pred HhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccCCCH
Q 003550 570 GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648 (811)
Q Consensus 570 ~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~ 648 (811)
++++.. .++|+|+||++++|.++++. |+++++++......+ ..+.++ .++. ..+.+. +.....
T Consensus 126 ~~~~~~---~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~----~~~~~~----~~~~--~~~~~~---~~~~~~ 189 (229)
T cd08562 126 RELWPH---ASKLLLSSFSLEALRAARRAAPELPLGLLFDTLPAD----WLELLA----ALGA--VSIHLN---YRGLTE 189 (229)
T ss_pred HHhcCC---cCCEEEECCCHHHHHHHHHhCCCCcEEEEecCCCcC----HHHHHH----HcCC--eEEecC---hhhCCH
Confidence 998874 15999999999999999999 999999987543211 111111 1111 112221 112457
Q ss_pred HHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCCh
Q 003550 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (811)
Q Consensus 649 ~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P 702 (811)
++|+.+|++|+.|++||+|++. ++..++ ++||||||||+|
T Consensus 190 ~~v~~~~~~g~~v~~wTvn~~~-------------~~~~~~-~~gVdgiiTD~p 229 (229)
T cd08562 190 EQVKALKDAGYKLLVYTVNDPA-------------RAAELL-EWGVDAIFTDRP 229 (229)
T ss_pred HHHHHHHHCCCEEEEEeCCCHH-------------HHHHHH-HCCCCEEEcCCC
Confidence 8999999999999999999884 577777 999999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG) |
| >cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=360.80 Aligned_cols=231 Identities=19% Similarity=0.225 Sum_probs=182.3
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccccc
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~ 489 (811)
||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|+ ++| .|.
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~d~iE~DV~~TkDg~~Vv~HD~~l~r~t~------------------~~g-~v~ 61 (235)
T cd08565 1 IAGHRGGRNLWPENTLEGFRKALELGVDAVEFDVHLTADGEVVVIHDPTLDRTTH------------------GTG-AVR 61 (235)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEeEEEccCCCEEEECCChhhcccC------------------CCC-cee
Confidence 6899999999999999999999999999999999999999999999999999998 667 899
Q ss_pred CCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHH
Q 003550 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (811)
Q Consensus 490 dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L 569 (811)
++||+||++|+.+.+. + ++||||+|+|+++++. ...++||+|...... ....+++.+++++
T Consensus 62 ~~t~~el~~l~~~~~~--------------~-~~iptL~evl~~~~~~--~~~l~iEiK~~~~~~--~~~~~~~~v~~~i 122 (235)
T cd08565 62 DLTLAERKALRLRDSF--------------G-EKIPTLEEVLALFAPS--GLELHVEIKTDADGT--PYPGAAALAAATL 122 (235)
T ss_pred eccHHHHhcCCCCCCC--------------C-CCCCCHHHHHHHhhcc--CcEEEEEECCCCCCC--ccHHHHHHHHHHH
Confidence 9999999999987541 2 7899999999999864 268999999653110 1124778999999
Q ss_pred HhcCCCCCCCcEEEEEeCChHHHHHHHhccCceEEEEEccccchhch-H-hHHHHH-HhhhhhccccceeecCCccccCC
Q 003550 570 GNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALN-Q-TIEDIK-KFADSVVLSKESVYPLNSAFITS 646 (811)
Q Consensus 570 ~~~g~~~~~~~~ViiqSfd~~~L~~lk~~p~~~~~~l~~~~~~d~~~-~-~l~~i~-~~a~~v~~~~~~i~p~~~~~l~~ 646 (811)
+++++. ++++|+||++.+|+++|+.|+++++++++........ . .+.... ..+..++++.. ....
T Consensus 123 ~~~~~~----~~v~~~Sf~~~~l~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 190 (235)
T cd08565 123 RRHGLL----ERSVLTSFDPAVLTEVRKHPGVRTLGSVDEDMLERLGGELPFLTATALKAHIVAVEQS--------LLAA 190 (235)
T ss_pred HhCCCc----CCEEEEECCHHHHHHHHhCCCCcEEEEeccccccccccccchhhhhhccCcEEccCcc--------cccC
Confidence 999987 6999999999999999998999999998642111000 0 001111 11222233211 1124
Q ss_pred CHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHH
Q 003550 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTA 705 (811)
Q Consensus 647 ~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~ 705 (811)
...+|+++|+ |++|++||+|++. ++.+++ ++||||||||+|+.+
T Consensus 191 ~~~~v~~~~~-g~~v~~WTVn~~~-------------~~~~l~-~~GVdgIiTD~P~~~ 234 (235)
T cd08565 191 TWELVRAAVP-GLRLGVWTVNDDS-------------LIRYWL-ACGVRQLTTDRPDLA 234 (235)
T ss_pred CHHHHHHHhC-CCEEEEEccCCHH-------------HHHHHH-HcCCCEEEeCCcccc
Confidence 5688999974 9999999999874 688887 999999999999864
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=355.38 Aligned_cols=229 Identities=25% Similarity=0.364 Sum_probs=186.1
Q ss_pred ceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccc
Q 003550 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (811)
Q Consensus 408 plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~ 487 (811)
.+||||||+++.+||||++||++|++.|+|+||||||+||||++||+||.+|+|+|+ ++| .
T Consensus 1 ~~iiaHRG~~~~~pENT~~Af~~A~~~g~~~vE~DV~~TkDg~~Vv~HD~~l~r~t~------------------~~~-~ 61 (230)
T cd08563 1 TLIFAHRGYSGTAPENTLLAFKKAIEAGADGIELDVHLTKDGQLVVIHDETVDRTTN------------------GKG-Y 61 (230)
T ss_pred CeEEEccCCCCCCCchhHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCCcccccC------------------CCC-c
Confidence 379999999999999999999999999999999999999999999999999999998 556 7
Q ss_pred ccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHH
Q 003550 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (811)
Q Consensus 488 v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~ 567 (811)
+.++||+||++++.+.+.. +.+. .+++|||+|+|+++++. ...++||+|.+.... ..+++.+++
T Consensus 62 i~~~t~~el~~l~~~~~~~---------~~~~-~~~iptL~evl~~~~~~--~~~l~leiK~~~~~~----~~~~~~l~~ 125 (230)
T cd08563 62 VKDLTLEELKKLDAGSWFD---------EKFT-GEKIPTLEEVLDLLKDK--DLLLNIEIKTDVIHY----PGIEKKVLE 125 (230)
T ss_pred hhhCCHHHHHhcCCCCccC---------ccCC-CCcCCCHHHHHHHHHhc--CcEEEEEECCCCCcC----hhHHHHHHH
Confidence 9999999999999875521 2232 36899999999999964 268999999764321 247889999
Q ss_pred HHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccCC
Q 003550 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITS 646 (811)
Q Consensus 568 ~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~ 646 (811)
+++++++. ++++++||+++.|..+++. |+++++++......+ ...++..... ..+.+. +...
T Consensus 126 ~l~~~~~~----~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~--------~~~~~~~~~~--~~v~~~---~~~~ 188 (230)
T cd08563 126 LVKEYNLE----DRVIFSSFNHESLKRLKKLDPKIKLALLYETGLQD--------PKDYAKKIGA--DSLHPD---FKLL 188 (230)
T ss_pred HHHHcCCC----CCEEEEcCCHHHHHHHHHHCCCCcEEEEecCcccC--------HHHHHHHhCC--EEEccC---chhc
Confidence 99999976 6999999999999999999 999999988654221 1222222211 112221 1224
Q ss_pred CHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCCh
Q 003550 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (811)
Q Consensus 647 ~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P 702 (811)
.+++++++|++|++|++||+|+.. ++.+++ ++||||||||+|
T Consensus 189 ~~~~i~~~~~~g~~v~~Wtvn~~~-------------~~~~~~-~~GVdgi~TD~P 230 (230)
T cd08563 189 TEEVVEELKKRGIPVRLWTVNEEE-------------DMKRLK-DLGVDGIITNYP 230 (230)
T ss_pred CHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-HCCCCEEeCCCC
Confidence 678999999999999999999874 688887 899999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE. |
| >cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=353.96 Aligned_cols=223 Identities=20% Similarity=0.222 Sum_probs=176.8
Q ss_pred eeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCccccc
Q 003550 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFS 488 (811)
Q Consensus 409 lIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v 488 (811)
+||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| ++| .|
T Consensus 1 ~iiaHRG~~~~~pENTl~af~~A~~~Gad~iE~DV~lT~Dg~~Vv~HD~~l~R~t~------------------~~g-~v 61 (226)
T cd08568 1 IILGHRGYRAKYPENTLEAFKKAIEYGADGVELDVWLTKDGKLVVLHDENLKRVGG------------------VDL-KV 61 (226)
T ss_pred CEEeccCCCCCCCcchHHHHHHHHHcCcCEEEEEEEEcCCCCEEEECCCcccccCC------------------CCc-ee
Confidence 48999999999999999999999999999999999999999999999999999998 667 89
Q ss_pred cCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHH
Q 003550 489 FSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEA 568 (811)
Q Consensus 489 ~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~ 568 (811)
.++||+||++++.+ .+++|||+|+|+++++. ..++||||... .++.++++
T Consensus 62 ~~~t~~eL~~l~~~------------------g~~iPtL~evl~~~~~~---~~l~iEiK~~~---------~~~~~~~~ 111 (226)
T cd08568 62 KELTYKELKKLHPG------------------GELIPTLEEVFRALPND---AIINVEIKDID---------AVEPVLEI 111 (226)
T ss_pred ecCCHHHHhhCCCC------------------CCcCCCHHHHHHhcCCC---cEEEEEECCcc---------HHHHHHHH
Confidence 99999999998865 16899999999999764 57999999643 34678899
Q ss_pred HHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHh-hhhhccccceeecCCccccCC
Q 003550 569 LGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKF-ADSVVLSKESVYPLNSAFITS 646 (811)
Q Consensus 569 L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~-a~~v~~~~~~i~p~~~~~l~~ 646 (811)
++++++. ++|+|+|||++.|.++|+. |.++++++++........ ....+.. +..+.++...+ .. .+ ...
T Consensus 112 l~~~~~~----~~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~-~~-~~~ 182 (226)
T cd08568 112 VEKFNAL----DRVIFSSFNHDALRELRKLDPDAKVGLLIGEEEEGFSI--PELHEKLKLYSLHVPIDAI-GY-IG-FEK 182 (226)
T ss_pred HHHcCCC----CcEEEEECCHHHHHHHHHhCCCCcEEEEeeccccccCH--HHHHHhcCCcEeccchhhh-cc-cc-ccc
Confidence 9999887 7999999999999999999 999999998643111100 1111111 22222221111 00 00 112
Q ss_pred CHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHH
Q 003550 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMT 704 (811)
Q Consensus 647 ~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~ 704 (811)
.+++|+++|++|++|++||+|++. ++..+. ++ |||||||+|+.
T Consensus 183 ~~~~v~~~~~~G~~v~~WTvn~~~-------------~~~~l~-~~-vdgiiTD~p~~ 225 (226)
T cd08568 183 FVELLRLLRKLGLKIVLWTVNDPE-------------LVPKLK-GL-VDGVITDDVEK 225 (226)
T ss_pred cHHHHHHHHHCCCEEEEEcCCCHH-------------HHHHHH-hh-CCEEEccCccc
Confidence 478999999999999999999874 566665 55 99999999975
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form. |
| >cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=370.79 Aligned_cols=251 Identities=18% Similarity=0.226 Sum_probs=183.2
Q ss_pred cceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCccc
Q 003550 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGI 486 (811)
Q Consensus 407 ~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~ 486 (811)
+|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||+... ++++.. .
T Consensus 1 ~p~IIAHRGas~~aPENTL~AF~~A~~~GaD~IElDV~lTkDGvlVV~HD~tL~RtTn~~g~-v~~~~~----------~ 69 (351)
T cd08608 1 KPAIIGHRGAPMLAPENTLMSFQKALEQKVYGLQADVTISLDGVPFLMHDRTLRRTTNVDRV-FPERQY----------E 69 (351)
T ss_pred CCeEEEcCCCCCCCCcchHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCccccccCCCCc-cccccc----------c
Confidence 47899999999999999999999999999999999999999999999999999999995431 111111 1
Q ss_pred cccCCCHHHHhccCccccC----Ccccc-cccC--CcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCc
Q 003550 487 FSFSLIWDEIQTLIPQISN----PYFKF-KLFR--NPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGM 559 (811)
Q Consensus 487 ~v~dlT~~ELk~L~~~~~~----p~~~~-~~~r--n~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~ 559 (811)
.+.++||+||++|+++.|+ ||... ...+ -..+.+ ++||||+|+|+++++.+ .+++||||.+..... ...
T Consensus 70 ~~~~~TlaEL~~LdaG~wf~~~~p~~~~~~~~~~~~~~~~g-e~IPTL~EvL~~~~~~~--~~l~iEIK~~~~~~~-~~~ 145 (351)
T cd08608 70 DASMFNWTDLERLNAGQWFLKDDPFWTAQSLSPSDRKEAGN-QSVCSLAELLELAKRYN--ASVLLNLRRPPPNHP-YHQ 145 (351)
T ss_pred ccccCCHHHHhhCCCCcccccCCccccccccccccccccCC-CCCCCHHHHHHHHHhcC--CeEEEEECCCcccCc-chh
Confidence 3578999999999999764 21100 0000 112334 78999999999998752 479999996531110 112
Q ss_pred cHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHH-hhhhhccccceee
Q 003550 560 SVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKK-FADSVVLSKESVY 637 (811)
Q Consensus 560 ~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~-~a~~v~~~~~~i~ 637 (811)
.+++.+++++.++++.. ++|+++||+. ++.+|+. |++++..... .....+++ .+..+.++.
T Consensus 146 ~~~~~v~~~i~~~~~~~---~~vi~sSf~~--~~~vr~l~P~~~~~~~~~--------~~~~~~~~~~~~~l~~~~---- 208 (351)
T cd08608 146 SWINLTLKTILASGIPQ---EQVMWTPDWQ--RKLVRKVAPGFQQTSGEK--------LPVASLRERGITRLNLRY---- 208 (351)
T ss_pred HHHHHHHHHHHHhCCCc---CeEEEEcchH--HHHHHHHCCCCeeecccc--------chHHHHHHcCCeEEccch----
Confidence 46778889898888752 5888899876 4789988 9988652110 01122211 122222221
Q ss_pred cCCccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHHHHHH
Q 003550 638 PLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYR 709 (811)
Q Consensus 638 p~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~~~~~ 709 (811)
...++++|+++|++|++|++||||++. ++..++ ++||||||||+|+.+.+..
T Consensus 209 ------~~lt~~~v~~~~~~Gl~V~vWTVN~~~-------------~~~~l~-~~GVdgIiTD~P~~l~~l~ 260 (351)
T cd08608 209 ------TQASAQEIRDYSASNLSVNLYTVNEPW-------------LYSLLW-CSGVPSVTSDASHVLRKVP 260 (351)
T ss_pred ------hhcCHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-HCCCCEEEECCHHHHHHhh
Confidence 124578999999999999999999885 577776 9999999999999998765
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti |
| >cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=353.05 Aligned_cols=219 Identities=21% Similarity=0.278 Sum_probs=182.4
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccccc
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~ 489 (811)
||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|+ +.| .+.
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~Gad~vE~DV~~T~Dg~~vv~HD~~l~r~t~------------------~~~-~v~ 61 (220)
T cd08579 1 IIAHRGVSSNGVENTLEALEAAIKAKPDYVEIDVQETKDGQFVVMHDANLKRLAG------------------VNK-KVW 61 (220)
T ss_pred CeeccCCCCCCCccHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCchhhccC------------------CCC-Chh
Confidence 6999999999999999999999999999999999999999999999999999998 555 799
Q ss_pred CCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHH
Q 003550 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (811)
Q Consensus 490 dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L 569 (811)
++||+||++++.+.+. .+ +++|||+|+|++++++ ..+++||||.+... ...+++.+++++
T Consensus 62 ~~t~~el~~l~~~~~~-------------~~-~~iptL~evl~~~~~~--~~~l~iEiK~~~~~----~~~~~~~v~~~l 121 (220)
T cd08579 62 DLTLEELKKLTIGENG-------------HG-AKIPSLDEYLALAKGL--KQKLLIELKPHGHD----SPDLVEKFVKLY 121 (220)
T ss_pred hCCHHHHhcCcCccCC-------------CC-CcCCCHHHHHHHhhcc--CCeEEEEECCCCCC----CHHHHHHHHHHH
Confidence 9999999999887531 22 7899999999999884 26899999976531 224788899999
Q ss_pred HhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccCCCH
Q 003550 570 GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648 (811)
Q Consensus 570 ~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~ 648 (811)
+++++. ++|+|+||++..++.+++. |++++++++....++. . ...++.+++. +...++
T Consensus 122 ~~~~~~----~~v~v~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~-----~--~~~~~~~~~~----------~~~~~~ 180 (220)
T cd08579 122 KQNLIE----NQHQVHSLDYRVIEKVKKLDPKIKTGYILPFNIGNL-----P--KTNVDFYSIE----------YSTLNK 180 (220)
T ss_pred HHcCCC----cCeEEEeCCHHHHHHHHHHCCCCeEEEEEecccCcc-----c--ccCceEEeee----------hhhcCH
Confidence 999987 6999999999999999998 9999999986543221 0 1112223322 112357
Q ss_pred HHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCCh
Q 003550 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (811)
Q Consensus 649 ~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P 702 (811)
++|+++|++|++|++||+|++. ++..++ ++|||||+||+|
T Consensus 181 ~~v~~~~~~G~~v~~wtvn~~~-------------~~~~~~-~~Gvd~i~TD~P 220 (220)
T cd08579 181 EFIRQAHQNGKKVYVWTVNDPD-------------DMQRYL-AMGVDGIITDYP 220 (220)
T ss_pred HHHHHHHHCCCEEEEEcCCCHH-------------HHHHHH-HcCCCEEeCCCC
Confidence 8999999999999999999884 678887 999999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor. |
| >cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=356.95 Aligned_cols=246 Identities=18% Similarity=0.184 Sum_probs=180.7
Q ss_pred CEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCc
Q 003550 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (811)
Q Consensus 92 plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g 171 (811)
|+||||||+++.+||||+.||+.|++.|+| +||+|||+||||++||+||.+|+|+||+.+
T Consensus 1 p~viaHRG~~~~~PENTl~Af~~A~~~G~d--~iE~DV~lTkDg~lVv~HD~~l~R~t~~~g------------------ 60 (263)
T cd08580 1 PLIVAHRGGTADAPENTLLAISKALANGAD--AIWLTVQLSKDGVPVLYRPSDLKSLTNGSG------------------ 60 (263)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCC--EEEEEeEECCCCCEEEeCCCchhcccCCCC------------------
Confidence 689999999999999999999999999999 999999999999999999999999999876
Q ss_pred ccccccCHHhhccccccccccCC-CCCCCCCCcccccHHHHHHhhCCCceEEeeccchhhhhcCchHHHHHHHHhhhcCc
Q 003550 172 WFSIDYTLNDLSNIILNQGVYSR-TDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV 250 (811)
Q Consensus 172 ~~v~d~t~~eL~~l~~~~~~~~~-~~~~~~~~~~iptL~evl~~~~~~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~~ 250 (811)
.+.++|++||++++++.++... +..|.+.+++||||+|+|++++...++||||.+.. ..+++.++++++++++
T Consensus 61 -~v~~~t~~el~~ld~g~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~~l~iEiK~~~~-----~~~~~~v~~~i~~~~~ 134 (263)
T cd08580 61 -AVSAYTAAQLATLNAGYNFKPEGGYPYRGKPVGIPTLEQVLRAFPDTPFILDMKSLPA-----DPQAKAVARVLERENA 134 (263)
T ss_pred -ChhhCcHHHHhcCCCccccccccCcccCCCCCcCccHHHHHHhhcCCeEEEEECCCCc-----HHHHHHHHHHHHhcCC
Confidence 7999999999999998866322 22355544699999999999988889999996531 2578889999999876
Q ss_pred ---eEEecCCHHHHHHHHHhcCCC-----CcceeeeecCCCccCCC-cccchHH-----HhhhHHHHHhhcccccCCCcc
Q 003550 251 ---NYISSPEVNFLRSIAARFRPS-----MTKLVFRFLGKSEIEPT-TNQTYGS-----LLKNLTFIKTFASGILVPKDY 316 (811)
Q Consensus 251 ---~~isSf~~~~L~~l~~~~~~~-----~~~lv~~~~~~~~~~~~-~~~~y~~-----l~~~L~~i~~~a~gi~~~~~~ 316 (811)
.+|+||+...|+++++..|.. .....+ +.......+. ....... +...+..++.++.+. ..
T Consensus 135 ~~~v~v~SF~~~~l~~~~~~~p~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 209 (263)
T cd08580 135 WSRVRIYSTNADYQDALAPYPQARLFESRDVTRTR-LANVAMAHQCDLPPDSGAWAGFELRRKVTVVETFTLGE----GR 209 (263)
T ss_pred CCCEEEEECCHHHHHHHHhcCcccccccHHHHHHH-HHhhhcccccccCccchhhccccccccchheeeecccc----cc
Confidence 499999999999999987620 001111 0000000000 0000000 000011111111111 11
Q ss_pred cccCCCcccCCCChHHHHHHHHc-CCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCC
Q 003550 317 IWPVDESLYLLPHTTIVLDAHKE-RLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLT 387 (811)
Q Consensus 317 i~~~~~~~~l~~~~~~V~~ah~~-Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~ 387 (811)
+.+ .+....+++|+.||++ |++|++||||+. ++|++++++| |||||||+|+.
T Consensus 210 ~~~----~~~l~t~~~V~~~h~~~gl~V~~WTVN~~------------~~~~~l~~~G---VDgIiTD~P~~ 262 (263)
T cd08580 210 SPV----QATLWTPAAVDCFRRNSKVKIVLFGINTA------------DDYRLAKCLG---ADAVMVDSPAA 262 (263)
T ss_pred ccc----ccccCCHHHHHHHHhcCCcEEEEEEeCCH------------HHHHHHHHcC---CCEEEeCCccc
Confidence 111 1233457899999999 999999999865 8999999999 99999999985
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated. |
| >cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=360.16 Aligned_cols=252 Identities=18% Similarity=0.129 Sum_probs=188.0
Q ss_pred ccceeecCCCCCCC--CCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccC
Q 003550 406 ANLLVISKNGASGD--YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAG 483 (811)
Q Consensus 406 ~~plIIAHRGasg~--~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~ 483 (811)
.+|+||||||+++. +||||++||++|++.|||+||+|||+||||++|++||.++++++... ..|. ..+
T Consensus 2 ~~~~iiaHRG~~~~~~~pENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~~~~~~~~~----~~~~------~~~ 71 (265)
T cd08564 2 VRPIIVGHRGAGCSTLYPENTLPSFRRALEIGVDGVELDVFLTKDNEIVVFHGTEDDTNPDTS----IQLD------DSG 71 (265)
T ss_pred CCceEEEeCCCCCCCCCCchhHHHHHHHHHcCCCEEEEeeEECCCCCEEEEcCCccccCcccc----cccc------CCC
Confidence 36899999999988 99999999999999999999999999999999999998776633100 0000 015
Q ss_pred ccccccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHH
Q 003550 484 SGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTN 563 (811)
Q Consensus 484 ~G~~v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~ 563 (811)
.| .+.++||+||++++++.+. ...+... ..+. .++||||+|+|+++++. ++++||||.+. ..+++
T Consensus 72 ~~-~v~~~t~~el~~l~~~~~~--~~~~~~~-~~~~-~~~iptL~evl~~~~~~---~~l~iEiK~~~-------~~~~~ 136 (265)
T cd08564 72 FK-NINDLSLDEITRLHFKQLF--DEKPCGA-DEIK-GEKIPTLEDVLVTFKDK---LKYNIELKGRE-------VGLGE 136 (265)
T ss_pred cc-chhhCcHHHHhhcccCccc--ccCcccc-cccC-CccCCCHHHHHHHhccC---cEEEEEeCCCc-------hhHHH
Confidence 56 7999999999999998763 1111111 1122 37899999999999874 68999999654 13678
Q ss_pred HHHHHHHhcCCCCCCCcEEEEEeCCh-HHHHHHHhc-cC---ceEEEEEccccchhchHhHHHHHHhhhhhccccceeec
Q 003550 564 SVMEALGNAGYNKQTALKVMIQSTDS-SVLMKLREK-TS---YELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYP 638 (811)
Q Consensus 564 ~v~~~L~~~g~~~~~~~~ViiqSfd~-~~L~~lk~~-p~---~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p 638 (811)
.|+++|+++++. ++|+|+||++ ++|.++++. |+ ++++++++..... ...+....+...+. ..+.+
T Consensus 137 ~v~~~l~~~~~~----~~v~i~SF~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~--~~v~~ 206 (265)
T cd08564 137 RVLNLVEKYGMI----LQVHFSSFLHYDRLDLLKALRPNKLNVPIALLFNEVKSP----SPLDFLEQAKYYNA--TWVNF 206 (265)
T ss_pred HHHHHHHHcCCC----CCEEEEecCchhHHHHHHHhCcCCCCceEEEEecCCCCc----ccccHHHHHHhcCC--ceeee
Confidence 999999999987 7999999999 999999998 87 9999998653110 01111111221111 11211
Q ss_pred CCccccCCCHHHHHHHHHcCCcEEEEe----cCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHHHHHH
Q 003550 639 LNSAFITSATDIVQRLQSFKLPVYVET----FSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYR 709 (811)
Q Consensus 639 ~~~~~l~~~~~~V~~~~~~Gl~V~vwt----vnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~~~~~ 709 (811)
. .. ...+++|+.+|++|+.|++|| +|++ +++..++ ++||||||||+|+.+.+++
T Consensus 207 ~-~~--~~~~~~v~~~~~~Gl~v~~wT~~~~~n~~-------------~~~~~l~-~~GvdgiiTD~p~~~~~~~ 264 (265)
T cd08564 207 S-YD--FWTEEFVKKAHENGLKVMTYFDEPVNDNE-------------EDYKVYL-ELGVDCICPNDPVLLVNFL 264 (265)
T ss_pred c-hh--hhhHHHHHHHHHcCCEEEEecCCCCCCCH-------------HHHHHHH-HcCCCEEEcCCHHHHHHhh
Confidence 1 11 135789999999999999999 3433 4677777 9999999999999999886
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-42 Score=364.55 Aligned_cols=248 Identities=19% Similarity=0.238 Sum_probs=183.3
Q ss_pred ceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccc
Q 003550 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (811)
Q Consensus 408 plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~ 487 (811)
|+||||||+++.+||||++||++|++.|+|+||||||+||||++||+||.+|+|+|+ +.| .
T Consensus 1 p~iiaHRG~~~~~pENTl~af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~~l~r~t~------------------~~~-~ 61 (264)
T cd08575 1 PLHIAHRGGAAEFPENTIAAFRHAVKNGADMLELDVQLTKDGQVVVFHDWDLDRLTG------------------GSG-L 61 (264)
T ss_pred CeEEEeCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEEcCCcccceeC------------------Cce-E
Confidence 689999999999999999999999999999999999999999999999999999998 556 8
Q ss_pred ccCCCHHHHhccCccccCCcccccccCC-cCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHH
Q 003550 488 SFSLIWDEIQTLIPQISNPYFKFKLFRN-PKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVM 566 (811)
Q Consensus 488 v~dlT~~ELk~L~~~~~~p~~~~~~~rn-~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~ 566 (811)
+.++||+||++++.+.+..... +.... ..+. .++||||+|+|+.+++ ..++||+|.+.. ..+++.++
T Consensus 62 v~~~t~~el~~l~~~~~~~~~~-~~~~~~~~~~-~~~iptL~evl~~~~~----~~l~iEiK~~~~------~~~~~~v~ 129 (264)
T cd08575 62 VSDLTYAELPPLDAGYGYTFDG-GKTGYPRGGG-DGRIPTLEEVFKAFPD----TPINIDIKSPDA------EELIAAVL 129 (264)
T ss_pred EecCCHHHHHhcccCCccccCC-CCcccccCCC-CCcCCcHHHHHHhCCC----CeEEEEECCCCH------HHHHHHHH
Confidence 9999999999999886532110 00001 1122 3789999999999865 489999997643 13788999
Q ss_pred HHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhc---hHh-H--HHHHHhhhhhccccceee--
Q 003550 567 EALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDAL---NQT-I--EDIKKFADSVVLSKESVY-- 637 (811)
Q Consensus 567 ~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~---~~~-l--~~i~~~a~~v~~~~~~i~-- 637 (811)
++++++++. ++|+|+|||+.+|+++++. |+++++++.....-... ... + ...+..+-.+.+....+.
T Consensus 130 ~~i~~~~~~----~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (264)
T cd08575 130 DLLEKYKRE----DRTVWGSTNPEYLRALHPENPNLFESFSMTRCLLLYLALGYTGLLPFVPIKESFFEIPRPVIVLETF 205 (264)
T ss_pred HHHHhcccc----ceEEEEeCCHHHHHHHHHhCcccccccCchhHHHHHHHhheeccCCCCCCCceEEEeecccEEEEEe
Confidence 999999987 6999999999999999998 98877766532100000 000 0 000000000111000000
Q ss_pred -----cCCccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHH
Q 003550 638 -----PLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMT 704 (811)
Q Consensus 638 -----p~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~ 704 (811)
.....+...++++|+++|++|++|++||+|++. ++.+++ ++||||||||+|+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~v~~~~~~G~~v~vWTVNd~~-------------~~~~l~-~~GVdgIiTD~P~~ 263 (264)
T cd08575 206 TLGEGASIVAALLWWPNLFDHLRKRGIQVYLWVLNDEE-------------DFEEAF-DLGADGVMTDSPTK 263 (264)
T ss_pred ccccccchhhhhhcCHHHHHHHHhcCCcEEEEEECCHH-------------HHHHHH-hcCCCEEEeCCccc
Confidence 000112235789999999999999999999884 688887 99999999999985
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4. |
| >cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=366.42 Aligned_cols=255 Identities=18% Similarity=0.197 Sum_probs=186.0
Q ss_pred cccccceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCcccccccccc
Q 003550 403 SKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMA 482 (811)
Q Consensus 403 ~~~~~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~ 482 (811)
+-..++.||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+||.... ++.+
T Consensus 18 ~~~~~~~IiAHRGa~~~aPENTl~AF~~A~~~Gad~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~~~-~~~~--------- 87 (316)
T cd08610 18 TLGPKPTIIGHRGAPMLAPENTMMSFEKAIEHGAHGLETDVTLSYDGVPFLMHDFTLKRTTNIGEV-QPES--------- 87 (316)
T ss_pred ccCCCCeEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEEccCCCEEEeCCCccccccCCCCc-cccc---------
Confidence 335578999999999999999999999999999999999999999999999999999999995431 2222
Q ss_pred CccccccCCCHHHHhccCccccCCccc-cc----c--cCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHh
Q 003550 483 GSGIFSFSLIWDEIQTLIPQISNPYFK-FK----L--FRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAE 555 (811)
Q Consensus 483 ~~G~~v~dlT~~ELk~L~~~~~~p~~~-~~----~--~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~ 555 (811)
..| .+.++||+||++++++.|+.... ++ . .....+.+ ++||||+|+|+++++.+ ..++||||.+.....
T Consensus 88 ~~~-~V~~~TlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~~-e~IPTLeEvL~~~~~~~--~~l~IEIK~~~~~~~ 163 (316)
T cd08610 88 ACE-NPAFFNWDFLSTLNAGKWFVKPRPFYNMKPLSEADKERARN-QSIPKLSNFLRLAEKEN--KLVIFDLYRPPPKHP 163 (316)
T ss_pred ccc-chhhCCHHHHhhCCCCCccCcccccccccccccccccccCC-CCCCCHHHHHHHhHhcC--ceEEEEeCCCcccCc
Confidence 224 68999999999999997641000 00 0 00012333 79999999999998752 579999995421110
Q ss_pred hcCccHHHHHHHHH-HhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHH-hhhhhccc
Q 003550 556 KQGMSVTNSVMEAL-GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKK-FADSVVLS 632 (811)
Q Consensus 556 ~~g~~~~~~v~~~L-~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~-~a~~v~~~ 632 (811)
....+++.+++.+ +++++. +++++ ||+...+..+++. |+++.++..... .....+ .+..+.
T Consensus 164 -~~~~~~~~v~~~i~~~~~~~----~~~v~-sf~~~~l~~~~~~~P~~~~~l~~~~~--------~~~l~~~~~~~l~-- 227 (316)
T cd08610 164 -YRHTWIRRVLEVILNEVGIE----QHLVL-WLPAHDRQYVQSVAPGFKQHVGRKVP--------IETLLKNNISILN-- 227 (316)
T ss_pred -chhHHHHHHHHHHHHHcCCC----CCEEE-EcCHHHHHHHHHHCcchhhhhccccc--------HHHHHHcCCeEEc--
Confidence 0013666777776 677887 56666 5889999999998 998765432111 111111 122222
Q ss_pred cceeecCCccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHHHHHH
Q 003550 633 KESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYR 709 (811)
Q Consensus 633 ~~~i~p~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~~~~~ 709 (811)
+. +...++++|+++|++|++|++||+|++. ++.+++ ++||||||||+|+.+.+..
T Consensus 228 -----~~---~~~l~~~~v~~a~~~Gl~V~vWTVNd~~-------------~~~~l~-~~GVDgIiTD~P~~l~~~~ 282 (316)
T cd08610 228 -----LA---YKKLFSNDIRDYKAANIHTNVYVINEPW-------------LFSLAW-CSGIHSVTTNNIHLLKQLD 282 (316)
T ss_pred -----cc---hhhCCHHHHHHHHHCCCEEEEECCCCHH-------------HHHHHH-hCCcCEEEeCCHHHHHHhh
Confidence 21 1123578999999999999999999884 577777 9999999999999997655
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation. |
| >cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=352.21 Aligned_cols=229 Identities=23% Similarity=0.278 Sum_probs=184.1
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccccc
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~ 489 (811)
||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+++|+|+ +.| .+.
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~~~vE~Dv~lTkDg~~Vv~HD~~l~r~t~------------------~~~-~i~ 61 (233)
T cd08582 1 VIAHRGASAEAPENTLAAFELAWEQGADGIETDVRLTKDGELVCVHDPTLKRTSG------------------GDG-AVS 61 (233)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEEEEccCCCEEEecCCccccccC------------------CCc-chh
Confidence 6999999999999999999999999999999999999999999999999999998 555 799
Q ss_pred CCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHH
Q 003550 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (811)
Q Consensus 490 dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L 569 (811)
++||+||++++.+.+.. ..+.+ ++||||+|+|+++++++ ..++||+|.+. .+..+++.+++++
T Consensus 62 ~~t~~el~~l~~~~~~~---------~~~~~-~~iptL~evl~~~~~~~--~~l~ieiK~~~-----~~~~~~~~~~~~~ 124 (233)
T cd08582 62 DLTLAELRKLDIGSWKG---------ESYKG-EKVPTLEEYLAIVPKYG--KKLFIEIKHPR-----RGPEAEEELLKLL 124 (233)
T ss_pred hCCHHHHhcCCCCcccC---------CCCCC-CcCCCHHHHHHHHHhcC--ceEEEEeCCCc-----cCccHHHHHHHHH
Confidence 99999999999876531 23333 78999999999998852 68999999751 2235788999999
Q ss_pred HhcC-CCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHH-hhhhhccccceeecCCccccCC
Q 003550 570 GNAG-YNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKK-FADSVVLSKESVYPLNSAFITS 646 (811)
Q Consensus 570 ~~~g-~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~-~a~~v~~~~~~i~p~~~~~l~~ 646 (811)
++++ .. ++|+++||++.+|..+++. |+++++|+.......... ....+. .+.++.++.. . ..
T Consensus 125 ~~~~~~~----~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~--~~~~~~~~~~~i~~~~~--------~-~~ 189 (233)
T cd08582 125 KESGLLP----EQIVIISFDAEALKRVRELAPTLETLWLRNYKSPKEDP--RPLAKSGGAAGLDLSYE--------K-KL 189 (233)
T ss_pred HHcCCCC----CCEEEEecCHHHHHHHHHHCCCCcEEEEeccCccccch--hHHHHhhCceEEccccc--------c-cC
Confidence 9985 44 6999999999999999998 999999997643211000 001111 1222332211 1 14
Q ss_pred CHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChH
Q 003550 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPM 703 (811)
Q Consensus 647 ~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~ 703 (811)
.+++|+.+|++|++|++||+|++. ++.+++ ++||||||||+|+
T Consensus 190 ~~~~v~~~~~~G~~v~~wTvn~~~-------------~~~~l~-~~GVdgi~TD~p~ 232 (233)
T cd08582 190 NPAFIKALRDAGLKLNVWTVDDAE-------------DAKRLI-ELGVDSITTNRPG 232 (233)
T ss_pred CHHHHHHHHHCCCEEEEEeCCCHH-------------HHHHHH-HCCCCEEEcCCCC
Confidence 678999999999999999999884 688887 8999999999996
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=355.12 Aligned_cols=232 Identities=16% Similarity=0.218 Sum_probs=182.9
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccccc
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~ 489 (811)
||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|+ ++| .|.
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~l~R~t~------------------~~g-~v~ 61 (258)
T cd08573 1 IIGHRGAGHDAPENTLAAFRQAKKNGADGVEFDLEFTKDGVPVLMHDDTVDRTTD------------------GTG-LVA 61 (258)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeECCCCcEEEECCCCcceecC------------------CCc-eEe
Confidence 6899999999999999999999999999999999999999999999999999999 566 799
Q ss_pred CCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHH
Q 003550 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (811)
Q Consensus 490 dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L 569 (811)
++||+||++|+++.++++ ...+.+ ++||||+|+|+++++.. ..++||+|.... .+++++.+++
T Consensus 62 ~~t~~el~~l~~~~~~~~-------~~~~~~-~~iptL~evl~~~~~~~--~~l~iEiK~~~~-------~~~~~v~~~l 124 (258)
T cd08573 62 ELTWEELRKLNAAAKHRL-------SSRFPG-EKIPTLEEAVKECLENN--LRMIFDVKSNSS-------KLVDALKNLF 124 (258)
T ss_pred cCcHHHHhhCCCCCCCCC-------ccccCC-CCCCCHHHHHHHHHhcC--CEEEEEeCCCcH-------HHHHHHHHHH
Confidence 999999999999876542 123444 79999999999998752 589999997542 3678899999
Q ss_pred HhcC-CCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhc-----h-----------HhHHHHHHhh-----
Q 003550 570 GNAG-YNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDAL-----N-----------QTIEDIKKFA----- 626 (811)
Q Consensus 570 ~~~g-~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~-----~-----------~~l~~i~~~a----- 626 (811)
++++ +. ++++|+||++.+|+++|+. |+++++++++....... . .-+..+..+.
T Consensus 125 ~~~~~~~----~~v~v~SF~~~~l~~~~~~~p~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (258)
T cd08573 125 KKYPGLY----DKAIVCSFNPIVIYKVRKADPKILTGLTWRPWFLSYTDDEGGPRRKSGWKHFLYSMLDVILEWSLHSWL 200 (258)
T ss_pred HHCCCcc----CCEEEEECCHHHHHHHHHhCCCceEEEecCcchhcccccccCcccchHHHHHHHHHHHHHHHHHHHhhh
Confidence 9988 76 6999999999999999999 99999998754210000 0 0011111110
Q ss_pred -hhhccccceeecCCccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHh-cCCCEEEeCC
Q 003550 627 -DSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEG-AGIDGVITEF 701 (811)
Q Consensus 627 -~~v~~~~~~i~p~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~-~GVDGIiTD~ 701 (811)
..+++ ..+.+.. -..++++|+++|++|++|++||+|++. ++..++ + +||| ||||+
T Consensus 201 ~~~~~~--~~v~~~~---~~~~~~~v~~~~~~G~~v~vWTVn~~~-------------~~~~l~-~~~GVd-iiTD~ 257 (258)
T cd08573 201 PYFLGV--SALLIHK---DDISSAYVRYWRARGIRVIAWTVNTPT-------------EKQYFA-KTLNVP-YITDS 257 (258)
T ss_pred hhhcCe--eEEEech---HhcCHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-HHhCCC-eecCC
Confidence 11121 2222221 124678999999999999999999884 688887 8 9999 99997
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G |
| >cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=357.01 Aligned_cols=237 Identities=23% Similarity=0.291 Sum_probs=190.3
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcch--hhhhcccccccccCCCCCC
Q 003550 93 FVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI--AQIFKTQQKNYLVNGVPTP 170 (811)
Q Consensus 93 lviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~--~~~~~~~~~~y~~~G~~~~ 170 (811)
+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++ .+
T Consensus 2 ~iiaHRG~~~~~pENT~~af~~A~~~G~d--~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~g----------------- 62 (256)
T cd08601 2 AVIAHRGASGYAPEHTFAAYDLAREMGAD--YIELDLQMTKDGVLVAMHDETLDRTTNIERPG----------------- 62 (256)
T ss_pred ceEEcCCCCCCCCCchHHHHHHHHHcCCC--EEEEEeeECCCCeEEEeCCCccccccCCCCCc-----------------
Confidence 59999999999999999999999999999 9999999999999999999999999987 44
Q ss_pred cccccccCHHhhccccccccccCC-----CCCCCCCCcccccHHHHHHhhCC-CceEEeeccchhhhhcCchHHHHHHHH
Q 003550 171 GWFSIDYTLNDLSNIILNQGVYSR-----TDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSV 244 (811)
Q Consensus 171 g~~v~d~t~~eL~~l~~~~~~~~~-----~~~~~~~~~~iptL~evl~~~~~-~~l~leiK~~~~~~~~~~~~~~~l~~~ 244 (811)
.+.++|++||++++++.++..+ +..+.+ ++||||+|+|+++++ .+++||||.+..+ ..+++.+.++
T Consensus 63 --~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~--~~iptL~evl~~~~~~~~l~IEiK~~~~~----~~~~~~v~~~ 134 (256)
T cd08601 63 --PVKDYTLAEIKQLDAGSWFNKAYPEYARESYSG--LKVPTLEEVIERYGGRANYYIETKSPDLY----PGMEEKLLAT 134 (256)
T ss_pred --eeecCcHHHHHhcCCCccccccCccccccccCC--ccCCCHHHHHHHhccCceEEEEeeCCCCC----CCHHHHHHHH
Confidence 7999999999999997755321 122334 799999999999975 7899999965322 2577889999
Q ss_pred hhhcCc---------eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCc
Q 003550 245 SRSVVV---------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKD 315 (811)
Q Consensus 245 lk~~~~---------~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~ 315 (811)
++++++ .+|+||+.+.++.+++..| +.++++++..... . +... ..+..++.++.++.+...
T Consensus 135 l~~~~~~~~~~~~~~v~i~Sf~~~~l~~~~~~~p--~~~~~~l~~~~~~-~----~~~~---~~~~~~~~~~~~~~~~~~ 204 (256)
T cd08601 135 LDKYGLLTDNLKNGQVIIQSFSKESLKKLHQLNP--NIPLVQLLWYGEG-A----ETYD---KWLDEIKEYAIGIGPSIA 204 (256)
T ss_pred HHHcCCCcccCCCCCEEEecCCHHHHHHHHHhCC--CCcEEEEeccCcc-c----ccch---hHHHHHHhcCeEeCCchh
Confidence 998854 4899999999999999988 6788875432211 0 1111 123444556666665432
Q ss_pred ccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcchhh
Q 003550 316 YIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAV 392 (811)
Q Consensus 316 ~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~~~~ 392 (811)
.+ .+++|+.+|++|++|++||+|+. ++|.++++.| ||||+||+|+.+.+++
T Consensus 205 ~~-----------~~~~v~~~~~~g~~v~~wTvn~~------------~~~~~l~~~G---vd~IiTD~p~~~~~~~ 255 (256)
T cd08601 205 DA-----------DPWMVHLIHKKGLLVHPYTVNEK------------ADMIRLINWG---VDGMFTNYPDRLKEVL 255 (256)
T ss_pred hc-----------CHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHhcC---CCEEEeCCHHHHHHhh
Confidence 22 36799999999999999999864 8999999999 9999999999877664
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=363.10 Aligned_cols=252 Identities=19% Similarity=0.201 Sum_probs=185.8
Q ss_pred cceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCccc
Q 003550 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGI 486 (811)
Q Consensus 407 ~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~ 486 (811)
++.||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||.... ++++. ..
T Consensus 26 ~~~IIAHRGas~~aPENTl~AF~~Ai~~GaD~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~g~-~~~~~----------~~ 94 (315)
T cd08609 26 KPALVGHRGAPMLAPENTLMSLRKSLECGVVVFETDVMVSKDGVPFLMHDEGLLRTTNVKDV-FPGRD----------AA 94 (315)
T ss_pred CCeEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEeCCCcccccCCCCCC-ccccc----------cc
Confidence 47899999999999999999999999999999999999999999999999999999994321 00000 01
Q ss_pred cccCCCHHHHhccCccccCCccc-c----cc--cCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCc
Q 003550 487 FSFSLIWDEIQTLIPQISNPYFK-F----KL--FRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGM 559 (811)
Q Consensus 487 ~v~dlT~~ELk~L~~~~~~p~~~-~----~~--~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~ 559 (811)
.|.|+||+||++++++.|+.... + .. .....+.+ ++||||+|+|+++++.+ ..++||||...... ....
T Consensus 95 ~V~dlTlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~g-e~IPTL~EvL~~~~~~~--~~l~IEIK~~~~~~-~~~~ 170 (315)
T cd08609 95 GSNNFTWTELKTLNAGSWFLERRPFWTLSSLSEEDRREADN-QTVPSLSELLDLAKKHN--VSIMFDLRNENNSH-VFYS 170 (315)
T ss_pred cHhhCCHHHHhhCCCCcccCcccccccccccccccccccCC-CCCCCHHHHHHHHHhcC--CEEEEEeCCCCCCC-ccHH
Confidence 48999999999999987641100 0 00 00011233 79999999999998752 57999999652100 0112
Q ss_pred cHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeec
Q 003550 560 SVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYP 638 (811)
Q Consensus 560 ~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p 638 (811)
.+++.+++.++++++.. +++++ ++...++++++. |++++++.... ......+..+++..
T Consensus 171 ~f~~~vl~~i~~~~~~~---~~v~~--~~~~~l~~~~~~~P~~~~~~~~~~----------~~~~~~~~~i~~~~----- 230 (315)
T cd08609 171 SFVFYTLETILKLGIPP---DKVWW--LPDEYRHDVMKMEPGFKQVYGRQK----------EMLMDGGNFMNLPY----- 230 (315)
T ss_pred HHHHHHHHHHHHcCCCc---ceEEE--eCHHHHHHHHHhCcCceeecccch----------hhHhcCCeEEeccc-----
Confidence 47788999999998752 35554 468899999998 99998764311 00111122222211
Q ss_pred CCccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHHHHHHHhc
Q 003550 639 LNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRRNR 712 (811)
Q Consensus 639 ~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~~~~~~~~ 712 (811)
......+|+++|++|++|++||+|++. ++.+++ ++||||||||+|+.+.+.++..
T Consensus 231 -----~~l~~~~v~~~~~~G~~v~vWTVNd~~-------------~~~~l~-~~GVDgIiTD~P~~l~~~~~~~ 285 (315)
T cd08609 231 -----QDLSALEIKELRKDNVSVNLWVVNEPW-------------LFSLLW-CSGVSSVTTNACQLLKDMSKPI 285 (315)
T ss_pred -----ccCCHHHHHHHHHCCCEEEEECCCCHH-------------HHHHHH-hcCCCEEEcCCHHHHHHhhhhh
Confidence 123578999999999999999999884 588887 9999999999999999988654
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia |
| >cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=358.80 Aligned_cols=257 Identities=16% Similarity=0.198 Sum_probs=189.1
Q ss_pred ceeecCCCCCCCCC--------CchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccc
Q 003550 408 LLVISKNGASGDYP--------SCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPE 479 (811)
Q Consensus 408 plIIAHRGasg~~P--------ENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~ 479 (811)
+.||||||+++.+| |||++||++|++.|||+||+|||+||||++||+||.+|+|+ +
T Consensus 2 ~~iiaHRG~~~~~p~~~~~~~pENTl~af~~A~~~g~d~vE~DV~lTkDg~~VV~HD~~l~rt-~--------------- 65 (286)
T cd08606 2 VQVIGHRGLGKNTAERKSLQLGENTVESFILAASLGASYVEVDVQLTKDLVPVIYHDFLVSET-G--------------- 65 (286)
T ss_pred ceEEEeCCCCCCcccccccCcCcchHHHHHHHHHcCCCEEEEEEEEccCCEEEEeCCCeeccC-C---------------
Confidence 57999999999999 99999999999999999999999999999999999999984 5
Q ss_pred cccCccccccCCCHHHHhccCccccCC-cccccccCCcCCCCC---CCCCCHHHHHHHHHhcCCCceEEEEecchhHHHh
Q 003550 480 IMAGSGIFSFSLIWDEIQTLIPQISNP-YFKFKLFRNPKNKNA---GKFMKLSDFLEMAKNANSLSGVLISIENAVYLAE 555 (811)
Q Consensus 480 ~~~~~G~~v~dlT~~ELk~L~~~~~~p-~~~~~~~rn~~~~~~---~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~ 555 (811)
++| .|.++||+||++|+...... |... .+. ..+.+. ++||||+|+|+.++.. .+++||||.+.....
T Consensus 66 ---~~~-~v~~lt~~eL~~ld~~~~~~~~~~~-~~~-~~~~g~~~~~~iptL~evl~~~~~~---~~l~IEiK~~~~~~~ 136 (286)
T cd08606 66 ---TDV-PIHDLTLEQFLHLSRMKYTVDFKKK-GFK-GNSRGHSIQAPFTTLEELLKKLPKS---VGFNIELKYPMLHEA 136 (286)
T ss_pred ---CCC-ccccCCHHHHHhhhccccccccccc-CCC-CcccccccccCCCcHHHHHHhCCCc---cceEEEEecCCcchh
Confidence 445 79999999999997432110 1000 000 111221 3689999999999654 689999997542210
Q ss_pred hc---------CccHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccch---hchHhHHHH
Q 003550 556 KQ---------GMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRD---ALNQTIEDI 622 (811)
Q Consensus 556 ~~---------g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d---~~~~~l~~i 622 (811)
.. ...+++.++++++++++. ++|+|+|||+++|+.++++ |+++++++++..... .....+...
T Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~----~~vi~sSF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~ 212 (286)
T cd08606 137 EEEEVAPVAIELNAFVDTVLEKVFDYGAG----RNIIFSSFTPDICILLSLKQPGYPVLFLTEAGKAPDMDVRAASLQEA 212 (286)
T ss_pred hhcccccchhHHHHHHHHHHHHHHhcCCC----CceEEEcCCHHHHHHHHhhCcCCCEEEEeCCCCCccCCchhhcHHHH
Confidence 00 013667899999999886 6999999999999999999 999999997643111 111112222
Q ss_pred HHhhhhhccccceeecCCccccCCCHHHHHHHHHcCCcEEEEec--CCcccccccccCCChHHHHHHHHHhcCCCEEEeC
Q 003550 623 KKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETF--SNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITE 700 (811)
Q Consensus 623 ~~~a~~v~~~~~~i~p~~~~~l~~~~~~V~~~~~~Gl~V~vwtv--nne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD 700 (811)
..++...+.. .+.+.. .++...+.+|+.+|++|+.|++||+ |++. ++.+++ ++||||||||
T Consensus 213 ~~~~~~~~~~--~~~~~~-~~~~~~~~~v~~~~~~Gl~v~~WTv~~n~~~-------------~~~~l~-~~GVdgIiTD 275 (286)
T cd08606 213 IRFAKQWNLL--GLVSAA-EPLVMCPRLIQVVKRSGLVCVSYGVLNNDPE-------------NAKTQV-KAGVDAVIVD 275 (286)
T ss_pred HHHHHHCCCe--EEEech-HHhhhChHHHHHHHHCCcEEEEECCccCCHH-------------HHHHHH-HcCCCEEEEC
Confidence 2344333331 121111 1223467899999999999999999 6553 577777 9999999999
Q ss_pred ChHHHHHHHH
Q 003550 701 FPMTAARYRR 710 (811)
Q Consensus 701 ~P~~~~~~~~ 710 (811)
+|+.+++.++
T Consensus 276 ~p~~~~~~~~ 285 (286)
T cd08606 276 SVLAIRRGLT 285 (286)
T ss_pred CHHHHHHHhc
Confidence 9999998764
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp |
| >cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=359.80 Aligned_cols=260 Identities=17% Similarity=0.236 Sum_probs=191.5
Q ss_pred eeecCCCCC--------CCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCcccccccc
Q 003550 409 LVISKNGAS--------GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEI 480 (811)
Q Consensus 409 lIIAHRGas--------g~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~ 480 (811)
+||||||++ +.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|+.+.. ...
T Consensus 1 ~viaHRG~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDG~lVv~HD~~l~r~~~~~~~---------~~~ 71 (293)
T cd08572 1 LVIGHRGLGKNYASGSLAGIRENTIASFLAAAKHGADMVEFDVQLTKDGVPVIYHDFTISVSEKSKTG---------SDE 71 (293)
T ss_pred CceEecCCCCCcCcccccCcCcccHHHHHHHHHcCCCEEEEEEEEccCCeEEEEcCCcceeecccccc---------ccc
Confidence 589999997 799999999999999999999999999999999999999999999985432 111
Q ss_pred ccCccccccCCCHHHHhccCccccCCcccccc------cCC---cCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchh
Q 003550 481 MAGSGIFSFSLIWDEIQTLIPQISNPYFKFKL------FRN---PKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAV 551 (811)
Q Consensus 481 ~~~~G~~v~dlT~~ELk~L~~~~~~p~~~~~~------~rn---~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~ 551 (811)
..+.+.++.++||+||++|+.+.+.++..... .+. +.+. .++||||+|+|+++++. .+++||||.+.
T Consensus 72 ~~g~~~~v~~lT~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iptL~evL~~~~~~---~~l~IEiK~~~ 147 (293)
T cd08572 72 GELIEVPIHDLTLEQLKELGLQHISALKRKALTRKAKGPKPNPWGMDE-HDPFPTLQEVLEQVPKD---LGFNIEIKYPQ 147 (293)
T ss_pred CcceeeehhhCcHHHHHhccccccccccccccccccccCCccccchhh-ccCCCCHHHHHHhCCCc---cceEEEEecCC
Confidence 22333489999999999999886532110000 000 1112 26899999999999764 68999999765
Q ss_pred HHHhh--------cCccHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccc-----hhchH
Q 003550 552 YLAEK--------QGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIR-----DALNQ 617 (811)
Q Consensus 552 ~~~~~--------~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~-----d~~~~ 617 (811)
..... ....+++.++++++++++. ++|+|+|||+++|..+++. |+++++++++.... +....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~vl~~i~~~~~~----~~vv~~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~ 223 (293)
T cd08572 148 LLEDGEGELTPYFERNAFVDTILAVVFEHAGG----RRIIFSSFDPDICIMLRLKQNKYPVLFLTNGGTNEVEHMDPRRR 223 (293)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHhCCC----CcEEEECCCHHHHHHHHhhCccCCEEEEecCCCCcccccchhhh
Confidence 32210 0124778999999999987 7999999999999999999 99999999865322 22222
Q ss_pred hHHHHHHhhhhhccccceeecCCccccCCCHHHHHHHHHcCCcEEEEec--CCcccccccccCCChHHHHHHHHHhcCCC
Q 003550 618 TIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETF--SNEFVSQAWDFFSDPTVEINTYYEGAGID 695 (811)
Q Consensus 618 ~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~~~V~~~~~~Gl~V~vwtv--nne~~~~~~d~~~D~~~e~~~~l~~~GVD 695 (811)
.+..+..++...+.. .+.+. ..++...+++|+.+|++|+.|++||+ |++ +++..+. ++|||
T Consensus 224 ~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~v~~~~~~Gl~v~~wTv~~n~~-------------~~~~~l~-~~GVd 286 (293)
T cd08572 224 SLQAAVNFALAEGLL--GVVLH-AEDLLKNPSLISLVKALGLVLFTYGDDNNDP-------------ENVKKQK-ELGVD 286 (293)
T ss_pred hHHHHHHHHHHCCCe--EEEec-hHHhhcCcHHHHHHHHcCcEEEEECCCCCCH-------------HHHHHHH-HcCCC
Confidence 344444555443332 12111 12233467899999999999999999 444 2566665 99999
Q ss_pred EEEeCCh
Q 003550 696 GVITEFP 702 (811)
Q Consensus 696 GIiTD~P 702 (811)
|||||+|
T Consensus 287 gIiTD~~ 293 (293)
T cd08572 287 GVIYDRV 293 (293)
T ss_pred EEEecCC
Confidence 9999996
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=351.43 Aligned_cols=232 Identities=14% Similarity=0.119 Sum_probs=179.1
Q ss_pred CCEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCC
Q 003550 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (811)
Q Consensus 91 ~plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~ 170 (811)
.|+||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+||+.+.++.+...
T Consensus 1 ~~~iiAHRG~~~~aPENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVV~HD~~l~Rtt~~~g~~~~~~~~--------- 69 (252)
T cd08574 1 KPALIGHRGAPMLAPENTLMSFEKALEHGVY--GLETDVTISYDGVPFLMHDRTLRRTTNVADVFPERAHE--------- 69 (252)
T ss_pred CCeEEecCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEeEccCCcEEEeCCCcccccCCCCccccccccc---------
Confidence 3689999999999999999999999999999 99999999999999999999999999998866554422
Q ss_pred cccccccCHHhhccccccccccCCCC-------------CCCCCCcccccHHHHHHhhCC--CceEEeeccchhhhhcCc
Q 003550 171 GWFSIDYTLNDLSNIILNQGVYSRTD-------------KFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNL 235 (811)
Q Consensus 171 g~~v~d~t~~eL~~l~~~~~~~~~~~-------------~~~~~~~~iptL~evl~~~~~--~~l~leiK~~~~~~~~~~ 235 (811)
.+.++|++||++++++.++..+.+ .|.+ ++||||+|+|+++++ ..++||||.+........
T Consensus 70 --~v~~~T~~eL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~~~--~~IPtL~evl~~~~~~~~~l~iEiK~~~~~~~~~~ 145 (252)
T cd08574 70 --RASMFTWTDLQQLNAGQWFLKDDPFWTASSLSESDREEAGN--QSIPSLAELLRLAKKHNKSVIFDLRRPPPNHPYYQ 145 (252)
T ss_pred --chhcCCHHHHhhCCCCCcccCCCccchhcccccchhhhcCC--CCCCCHHHHHHHHHHcCCeEEEEecCCcccCccHH
Confidence 689999999999999987643221 3445 799999999999964 569999996542111223
Q ss_pred hHHHHHHHHhhhcCc---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHh-hccccc
Q 003550 236 SMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGIL 311 (811)
Q Consensus 236 ~~~~~l~~~lk~~~~---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~-~a~gi~ 311 (811)
.+++.++++++++++ .+++||+. .++.+++..| ..++.+.. .. .. ..++. .+.++.
T Consensus 146 ~~~~~v~~~l~~~~~~~~~v~~s~~~-~~~~~~~~~p--~~~~~~~~--~~--------~~-------~~~~~~~~~~~~ 205 (252)
T cd08574 146 SYVNITLDTILASGIPQHQVFWLPDE-YRALVRKVAP--GFQQVSGR--KL--------PV-------ESLRENGISRLN 205 (252)
T ss_pred HHHHHHHHHHHHcCCCcccEEEccHH-HHHHHHHHCC--CCeEeecc--cc--------ch-------HHHHhcCCeEEc
Confidence 578899999999876 24555554 4799999988 55555311 10 00 11111 244444
Q ss_pred CCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEecc
Q 003550 312 VPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSD 383 (811)
Q Consensus 312 ~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD 383 (811)
+.+.. ...++|+.+|++|++|++||||+. ++|++++++| |||||||
T Consensus 206 ~~~~~-----------~~~~~v~~~~~~g~~v~~WTVn~~------------~~~~~l~~~G---VdgIiTD 251 (252)
T cd08574 206 LEYSQ-----------LSAQEIREYSKANISVNLYVVNEP------------WLYSLLWCSG---VQSVTTN 251 (252)
T ss_pred cCccc-----------CCHHHHHHHHHCCCEEEEEccCCH------------HHHHHHHHcC---CCEEecC
Confidence 43322 236799999999999999999865 8999999999 9999999
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo |
| >cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=344.33 Aligned_cols=229 Identities=21% Similarity=0.210 Sum_probs=176.7
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccccc
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~ 489 (811)
||||||++|.+||||++||++|++.|+|+||||||+||||++||+||.+++|+|+ ++|..+.
T Consensus 1 iiAHRG~~~~~pENT~~af~~a~~~g~d~vE~Dv~lTkDg~~vv~HD~~l~R~t~------------------~~~~~v~ 62 (234)
T cd08570 1 VIGHRGYKAKYPENTLLAFEKAVEAGADAIETDVHLTKDGVVVISHDPNLKRCFG------------------KDGLIID 62 (234)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeEccCCcEEEeCCCccceeeC------------------CCCCEec
Confidence 6899999999999999999999999999999999999999999999999999998 5522799
Q ss_pred CCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcC-CCceEEEEecchhHHHhhcCccHHHHHHHH
Q 003550 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNAN-SLSGVLISIENAVYLAEKQGMSVTNSVMEA 568 (811)
Q Consensus 490 dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~-~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~ 568 (811)
++||+||++++.+.. +.+++|||+|+|+++++.. ..+.++||+|..... ..+++.+.++
T Consensus 63 ~~t~~eL~~l~~~~~---------------~~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~-----~~~~~~v~~~ 122 (234)
T cd08570 63 DSTWDELSHLRTIEE---------------PHQPMPTLKDVLEWLVEHELPDVKLMLDIKRDNDP-----EILFKLIAEM 122 (234)
T ss_pred cCCHHHHhhcccccC---------------CCccCCcHHHHHHHHHhcCCCCeEEEEEECCCCCH-----HHHHHHHHHH
Confidence 999999999987621 1258999999999998641 125899999964321 1366788888
Q ss_pred HHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHh---hhhhccccceeecCCcccc
Q 003550 569 LGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKF---ADSVVLSKESVYPLNSAFI 644 (811)
Q Consensus 569 L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~---a~~v~~~~~~i~p~~~~~l 644 (811)
+++++......+||+|+||++..++.+++. |+++++++..... ....+..+ +..+.+....+ +.
T Consensus 123 i~~~~~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~------~~ 190 (234)
T cd08570 123 LAVKPDLDFWRERIILGLWHLDFLKYGKEVLPGFPVFHIGFSLD------YARHFLNYSEKLVGISMHFVSL------WG 190 (234)
T ss_pred HHhcCCcccccCCEEEEeCCHHHHHHHHHhCCCCCeEEEEcCHH------HHHHHhccccccceEEeeeehh------hc
Confidence 888753211126999999999999999998 9999998864321 01111111 11111111000 00
Q ss_pred CCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCCh
Q 003550 645 TSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (811)
Q Consensus 645 ~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P 702 (811)
...+++|+++|++|++|++||+|++. ++.+++ ++||||||||+|
T Consensus 191 ~~~~~~v~~~~~~gl~v~~wTvn~~~-------------~~~~l~-~~gvdgiiTD~P 234 (234)
T cd08570 191 PFGQAFLPELKKNGKKVFVWTVNTEE-------------DMRYAI-RLGVDGVITDDP 234 (234)
T ss_pred ccCHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-HCCCCEEEeCCC
Confidence 13678999999999999999999884 688887 999999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip |
| >cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=352.47 Aligned_cols=253 Identities=19% Similarity=0.218 Sum_probs=186.0
Q ss_pred eeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCC-cCCCccccccccccCcccc
Q 003550 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS-KFNSITTTIPEIMAGSGIF 487 (811)
Q Consensus 409 lIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~-~f~~r~~~~~~~~~~~G~~ 487 (811)
.||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|+.... .+. ....| .
T Consensus 2 ~iiaHRG~~~~~pENT~~Af~~A~~~Gad~vE~DV~~TkDg~~Vv~HD~~l~r~~~r~~~~~~~---------~~~~~-~ 71 (263)
T cd08567 2 DLQGHRGARGLLPENTLPAFAKALDLGVDTLELDLVLTKDGVIVVSHDPKLNPDITRDPDGAWL---------PYEGP-A 71 (263)
T ss_pred ceEeccCCCCCCCcchHHHHHHHHHcCCCEEEEEEEEcCCCCEEEeCCCccCcceeecCCCCcc---------cccCc-c
Confidence 589999999999999999999999999999999999999999999999999987642110 000 00124 8
Q ss_pred ccCCCHHHHhccCccccCCcccccccCCc---CCCCCCCCCCHHHHHHHHHhcC-CCceEEEEecchhHHH--hhcCccH
Q 003550 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNP---KNKNAGKFMKLSDFLEMAKNAN-SLSGVLISIENAVYLA--EKQGMSV 561 (811)
Q Consensus 488 v~dlT~~ELk~L~~~~~~p~~~~~~~rn~---~~~~~~~ipTL~E~L~~~k~~~-~~~gi~IEiK~~~~~~--~~~g~~~ 561 (811)
|.++||+||++|+.+.+.+-+.+ ..+.+ .+.+ +++|||+|+|+++++.+ ..++++||+|.+.... ...+..+
T Consensus 72 v~~~t~~el~~l~~~~~~~~~~~-~~~~~~~~~~~~-~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~ 149 (263)
T cd08567 72 LYELTLAEIKQLDVGEKRPGSDY-AKLFPEQIPVPG-TRIPTLEEVFALVEKYGNQKVRFNIETKSDPDRDILHPPPEEF 149 (263)
T ss_pred hhcCCHHHHHhcCCCccccCcCc-ccCCCccccCcc-ccCCCHHHHHHHHHHhccCCceEEEEEcCCCCccccCccHHHH
Confidence 99999999999998866311100 01111 1112 68999999999999742 1268999999654220 0012357
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCC
Q 003550 562 TNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLN 640 (811)
Q Consensus 562 ~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~ 640 (811)
++.++++++++++. ++|+|+||++++|+.+++. |++++++++..... ..+.+. +...+. ..+.+.
T Consensus 150 ~~~v~~~l~~~~~~----~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~----~~~~~~---~~~~~~--~~~~~~- 215 (263)
T cd08567 150 VDAVLAVIRKAGLE----DRVVLQSFDWRTLQEVRRLAPDIPTVALTEETTL----GNLPRA---AKKLGA--DIWSPY- 215 (263)
T ss_pred HHHHHHHHHHcCCC----CceEEEeCCHHHHHHHHHHCCCccEEEEecCCcc----cCHHHH---HHHhCC--cEEecc-
Confidence 88999999999987 6999999999999999998 99999999864310 011111 111222 122221
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChH
Q 003550 641 SAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPM 703 (811)
Q Consensus 641 ~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~ 703 (811)
+...++++++.+|++|+.|++||+|+.. ++..++ ++||||||||+|+
T Consensus 216 --~~~~~~~~i~~~~~~G~~v~vwtvn~~~-------------~~~~~~-~~Gvdgi~TD~P~ 262 (263)
T cd08567 216 --FTLVTKELVDEAHALGLKVVPWTVNDPE-------------DMARLI-DLGVDGIITDYPD 262 (263)
T ss_pred --hhhcCHHHHHHHHHCCCEEEEecCCCHH-------------HHHHHH-HcCCCEEEcCCCC
Confidence 1234678999999999999999999773 577776 9999999999996
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=356.82 Aligned_cols=261 Identities=19% Similarity=0.201 Sum_probs=183.3
Q ss_pred eeecCCCCC-------CCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccc
Q 003550 409 LVISKNGAS-------GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIM 481 (811)
Q Consensus 409 lIIAHRGas-------g~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~ 481 (811)
+.|||||++ +.+||||++||+.|++.|||+||||||+||||++||+||.+|+|+|+.... .+..
T Consensus 1 ~~iaHRG~~~~~~~~~~~~PENTl~af~~A~~~Gad~iE~DV~lTkDg~~VV~HD~~l~r~~~~~~~---------~~~~ 71 (290)
T cd08607 1 LDVGHRGAGNSYTAASAVVRENTIASFLQAAEHGADMVEFDVQLTKDLVPVVYHDFTLRVSLKSKGD---------SDRD 71 (290)
T ss_pred CceecCCCCcCcccccCCCCccHHHHHHHHHHcCCCEEEEEEEEccCCeEEEEcCCeeEeeccCccc---------cCcc
Confidence 469999984 899999999999999999999999999999999999999999999873210 0000
Q ss_pred cCccccccCCCHHHHhccCccccCC-ccc-cc-ccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhh--
Q 003550 482 AGSGIFSFSLIWDEIQTLIPQISNP-YFK-FK-LFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEK-- 556 (811)
Q Consensus 482 ~~~G~~v~dlT~~ELk~L~~~~~~p-~~~-~~-~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~-- 556 (811)
.+.+..|.++||+||++++++.+.. +.. +. ..++......++||||+|+|+++++. .+++||||.+......
T Consensus 72 ~~~~~~v~~lt~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~---~~lnIEiK~~~~~~~~~~ 148 (290)
T cd08607 72 DLLEVPVKDLTYEQLKLLKLFHISALKVKEYKSVEEDEDPPEHQPFPTLSDVLESVPED---VGFNIEIKWPQQQKDGSW 148 (290)
T ss_pred ceEEEecccCCHHHHhhcCcccccccccccccccccccccccccCCCCHHHHHHhCCCc---cceEEEEecCcccccccc
Confidence 1112379999999999999875321 110 00 00000111136899999999999764 6899999976421100
Q ss_pred --------cCccHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccc------hhchHhHHH
Q 003550 557 --------QGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIR------DALNQTIED 621 (811)
Q Consensus 557 --------~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~------d~~~~~l~~ 621 (811)
....+++.+++.+.+++.. ++|+|+||++.+|..++.+ |.+++++++..... +.....+..
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~i~~~~~~----~~v~isSF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 224 (290)
T cd08607 149 ESELFTYFDRNLFVDIILKIVLEHAGK----RRIIFSSFDADICTMLRFKQNKYPVLFLTQGKTQRYPEFMDLRTRTFEI 224 (290)
T ss_pred ccccccccchhHHHHHHHHHHHHhCCC----CCEEEEcCCHHHHHHHHHhCcCCCEEEEecCCCCccccccchHHHhHHH
Confidence 0012677889999888776 6999999999999999998 99999999854311 111111222
Q ss_pred HHHhhhhhccccceeecCCccccCCCHHHHHHHHHcCCcEEEEec--CCcccccccccCCChHHHHHHHHHhcCCCEEEe
Q 003550 622 IKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETF--SNEFVSQAWDFFSDPTVEINTYYEGAGIDGVIT 699 (811)
Q Consensus 622 i~~~a~~v~~~~~~i~p~~~~~l~~~~~~V~~~~~~Gl~V~vwtv--nne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiT 699 (811)
...++...... .+.. ...++...+++|+.+|++|+.|++||+ |++. ++.+++ ++|||||||
T Consensus 225 ~~~~~~~~~~~--~~~~-~~~~~~~~~~~v~~~~~~Gl~v~~wTv~~n~~~-------------~~~~l~-~~GVdgIiT 287 (290)
T cd08607 225 AVNFAQAEELL--GVNL-HSEDLLKDPSQIELAKSLGLVVFCWGDDLNDPE-------------NRKKLK-ELGVDGLIY 287 (290)
T ss_pred HHHHHHHcCCc--eeEe-chhhhhcChHHHHHHHHcCCEEEEECCCCCCHH-------------HHHHHH-HcCCCEEEe
Confidence 22333332221 1111 112233567899999999999999999 6553 577776 999999999
Q ss_pred CCh
Q 003550 700 EFP 702 (811)
Q Consensus 700 D~P 702 (811)
|++
T Consensus 288 D~~ 290 (290)
T cd08607 288 DRI 290 (290)
T ss_pred cCC
Confidence 985
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism. |
| >cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=358.65 Aligned_cols=248 Identities=11% Similarity=0.040 Sum_probs=186.0
Q ss_pred CCCCCEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCC
Q 003550 88 TGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGV 167 (811)
Q Consensus 88 ~~~~plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~ 167 (811)
-+..|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+||+.+.++++.+.
T Consensus 19 ~~~~~~IiAHRGa~~~aPENTl~AF~~A~~~Gad--~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~~~~~~~~~~------ 90 (316)
T cd08610 19 LGPKPTIIGHRGAPMLAPENTMMSFEKAIEHGAH--GLETDVTLSYDGVPFLMHDFTLKRTTNIGEVQPESACE------ 90 (316)
T ss_pred cCCCCeEEECCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEEEccCCCEEEeCCCccccccCCCCcccccccc------
Confidence 3556899999999999999999999999999999 99999999999999999999999999998766655332
Q ss_pred CCCcccccccCHHhhccccccccccCC-------------CCCCCCCCcccccHHHHHHhhCC--CceEEeeccchhhhh
Q 003550 168 PTPGWFSIDYTLNDLSNIILNQGVYSR-------------TDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQ 232 (811)
Q Consensus 168 ~~~g~~v~d~t~~eL~~l~~~~~~~~~-------------~~~~~~~~~~iptL~evl~~~~~--~~l~leiK~~~~~~~ 232 (811)
.+.++|++||++++++.++... ...|.| ++||||+|+|+++++ ..++||||.+.....
T Consensus 91 -----~V~~~TlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~~--e~IPTLeEvL~~~~~~~~~l~IEIK~~~~~~~ 163 (316)
T cd08610 91 -----NPAFFNWDFLSTLNAGKWFVKPRPFYNMKPLSEADKERARN--QSIPKLSNFLRLAEKENKLVIFDLYRPPPKHP 163 (316)
T ss_pred -----chhhCCHHHHhhCCCCCccCcccccccccccccccccccCC--CCCCCHHHHHHHhHhcCceEEEEeCCCcccCc
Confidence 6899999999999999776321 012334 799999999999965 568999996421111
Q ss_pred cCchHHHHHHHHh-hhcCc--eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHh-hcc
Q 003550 233 HNLSMRSFVLSVS-RSVVV--NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FAS 308 (811)
Q Consensus 233 ~~~~~~~~l~~~l-k~~~~--~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~-~a~ 308 (811)
....+++.++..+ +++++ .++.||+...++.+++..| ..+..+... . .+..... .+.
T Consensus 164 ~~~~~~~~v~~~i~~~~~~~~~~v~sf~~~~l~~~~~~~P--~~~~~l~~~--~---------------~~~~l~~~~~~ 224 (316)
T cd08610 164 YRHTWIRRVLEVILNEVGIEQHLVLWLPAHDRQYVQSVAP--GFKQHVGRK--V---------------PIETLLKNNIS 224 (316)
T ss_pred chhHHHHHHHHHHHHHcCCCCCEEEEcCHHHHHHHHHHCc--chhhhhccc--c---------------cHHHHHHcCCe
Confidence 1123566677765 66665 2555799999999999988 444332110 0 0111111 234
Q ss_pred cccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCc
Q 003550 309 GILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTP 388 (811)
Q Consensus 309 gi~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a 388 (811)
++.++...+ ..++|+++|++|++|++||||+. ++|+++++.| |||||||+|+.+
T Consensus 225 ~l~~~~~~l-----------~~~~v~~a~~~Gl~V~vWTVNd~------------~~~~~l~~~G---VDgIiTD~P~~l 278 (316)
T cd08610 225 ILNLAYKKL-----------FSNDIRDYKAANIHTNVYVINEP------------WLFSLAWCSG---IHSVTTNNIHLL 278 (316)
T ss_pred EEccchhhC-----------CHHHHHHHHHCCCEEEEECCCCH------------HHHHHHHhCC---cCEEEeCCHHHH
Confidence 444433222 36799999999999999999865 8999999999 999999999987
Q ss_pred chhhhhh
Q 003550 389 SAAVDCF 395 (811)
Q Consensus 389 ~~~~~~~ 395 (811)
.+...-.
T Consensus 279 ~~~~~~~ 285 (316)
T cd08610 279 KQLDHPH 285 (316)
T ss_pred HHhhchh
Confidence 6555433
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation. |
| >cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=345.72 Aligned_cols=243 Identities=19% Similarity=0.217 Sum_probs=184.5
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccccc
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~ 489 (811)
||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|+ +.| .+.
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~g~d~vE~Dv~~TkDg~~Vv~HD~~l~r~t~------------------~~~-~i~ 61 (249)
T cd08561 1 VIAHRGGAGLAPENTLLAFEDAVELGADVLETDVHATKDGVLVVIHDETLDRTTD------------------GTG-PVA 61 (249)
T ss_pred CcccCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeECCCCCEEEECCCccccccC------------------CCC-chh
Confidence 6899999999999999999999999999999999999999999999999999999 455 799
Q ss_pred CCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHH
Q 003550 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (811)
Q Consensus 490 dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L 569 (811)
++||+||++++.+.+.... .+......+. .+++|||+|+|+++++ ..++||+|.+. ..+++.+++++
T Consensus 62 ~~t~~el~~l~~~~~~~~~-~~~~~~~~~~-~~~iptL~evl~~~~~----~~~~ieiK~~~-------~~~~~~~~~~l 128 (249)
T cd08561 62 DLTLAELRRLDAGYHFTDD-GGRTYPYRGQ-GIRIPTLEELFEAFPD----VRLNIEIKDDG-------PAAAAALADLI 128 (249)
T ss_pred hCCHHHHhhcCcCccccCc-cccccccCCC-CccCCCHHHHHHhCcC----CcEEEEECCCc-------hhHHHHHHHHH
Confidence 9999999999987552100 0000001122 2689999999999865 48999999753 13678999999
Q ss_pred HhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHH--hhhhhcccccee-ecCC-cccc
Q 003550 570 GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKK--FADSVVLSKESV-YPLN-SAFI 644 (811)
Q Consensus 570 ~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~--~a~~v~~~~~~i-~p~~-~~~l 644 (811)
+++++. ++++|+||+..+|..+++. |+++++++.+... + +..... +...+......+ ++.. .++.
T Consensus 129 ~~~~~~----~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (249)
T cd08561 129 ERYGAQ----DRVLVASFSDRVLRRFRRLCPRVATSAGEGEVA-A-----FVLASRLGLGSLYSPPYDALQIPVRYGGVP 198 (249)
T ss_pred HHcCCC----CcEEEEECCHHHHHHHHHHCCCcceeccHHHHH-H-----HHHHhhcccccccCCCCcEEEcCcccCCee
Confidence 999876 7999999999999999999 9999988753310 0 000000 000000100111 1111 1122
Q ss_pred CCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHHHHH
Q 003550 645 TSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARY 708 (811)
Q Consensus 645 ~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~~~~ 708 (811)
...+++|+.+|++|+.|++||+|+.. ++..++ ++||||||||+|+++.++
T Consensus 199 ~~~~~~v~~~~~~G~~v~vWTVN~~~-------------~~~~l~-~~gVdgIiTD~p~~~~~~ 248 (249)
T cd08561 199 LVTPRFVRAAHAAGLEVHVWTVNDPA-------------EMRRLL-DLGVDGIITDRPDLLLEV 248 (249)
T ss_pred cCCHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-hcCCCEEEcCCHHHHHhh
Confidence 34679999999999999999999874 688887 999999999999998875
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=354.57 Aligned_cols=257 Identities=16% Similarity=0.174 Sum_probs=185.7
Q ss_pred cCCCCCEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCC
Q 003550 87 LTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNG 166 (811)
Q Consensus 87 l~~~~plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G 166 (811)
++..+|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|++.+
T Consensus 22 ~~~~~~~iiAHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDG~lVV~HD~~l~Rtt~~~g------------- 86 (300)
T cd08612 22 KSPFPCRHISHRGGSGENLENTMEAFEHAVKVGTD--MLELDVHLTKDGQVVVSHDENLLRSCGVDK------------- 86 (300)
T ss_pred ccCCCCCEEECCCCCCCCCccHHHHHHHHHHcCCC--EEEEEeeECcCCeEEEECCccccccCCCCc-------------
Confidence 34668899999999999999999999999999999 999999999999999999999999999775
Q ss_pred CCCCcccccccCHHhhccccccccc-----cCCCCCCCCCCcccccHHHHHHhhCCCceEEeeccchhhhhcCchHHHHH
Q 003550 167 VPTPGWFSIDYTLNDLSNIILNQGV-----YSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFV 241 (811)
Q Consensus 167 ~~~~g~~v~d~t~~eL~~l~~~~~~-----~~~~~~~~~~~~~iptL~evl~~~~~~~l~leiK~~~~~~~~~~~~~~~l 241 (811)
.|.++|++||++++++..+ .+++..|.| ++||||+|+|++++...++||||.+. ..+++.+
T Consensus 87 ------~V~~~t~~eL~~l~~~~~~~~~~~~~~~~~~~g--~~IPtL~EvL~~~~~~~lnIEiK~~~------~~~~~~v 152 (300)
T cd08612 87 ------LVSDLNYADLPPYLEKLEVTFSPGDYCVPKGSD--RRIPLLEEVFEAFPDTPINIDIKVEN------DELIKKV 152 (300)
T ss_pred ------ccccCCHHHHhhccccccccccCCccccccCCC--CCCCCHHHHHHhCCCCeEEEEECCCc------hHHHHHH
Confidence 7999999999999543211 112344555 89999999999998888999999753 1377889
Q ss_pred HHHhhhcCc---eEEecCCHHHHHHHHHhcCCCCcceeeeecCC--------CccCCCcccchHHHhhhH--HHHHhhcc
Q 003550 242 LSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGK--------SEIEPTTNQTYGSLLKNL--TFIKTFAS 308 (811)
Q Consensus 242 ~~~lk~~~~---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~--------~~~~~~~~~~y~~l~~~L--~~i~~~a~ 308 (811)
++++++++. .+++||+.+.|+.+++..| +.++.+..-.. ....+........+.... ..++.+..
T Consensus 153 ~~~i~~~~~~~~v~isSF~~~~L~~~~~~~p--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (300)
T cd08612 153 SDLVRKYKREDITVWGSFNDEIVKKCHKENP--NIPLFFSLKRVLLLLLLYYTGLLPFIPIKESFLEIPMPSIFLKTYFP 230 (300)
T ss_pred HHHHHHcCCCCcEEEEeCCHHHHHHHHHhCC--CccEEechHHHHHHHHHHHcccCccccCccccccccchhhhhhhccc
Confidence 999998876 4999999999999999988 56666521000 000000000000000000 00000000
Q ss_pred c--ccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCC
Q 003550 309 G--ILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPL 386 (811)
Q Consensus 309 g--i~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~ 386 (811)
. ........++. .+....+++|+.+|++|++|++||||+. ++|++++++| ||||+||+|+
T Consensus 231 ~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~G~~v~vWTVNd~------------~~~~~l~~~G---VdgIiTD~P~ 292 (300)
T cd08612 231 KSMSRLNRFVLFLI---DWLLMRPSLFRHLQKRGIQVYGWVLNDE------------EEFERAFELG---ADGVMTDYPT 292 (300)
T ss_pred ccccccccceeccc---ccccCCHHHHHHHHHCCCEEEEeecCCH------------HHHHHHHhcC---CCEEEeCCHH
Confidence 0 00000001111 1223357899999999999999999865 8999999999 9999999999
Q ss_pred Ccchhh
Q 003550 387 TPSAAV 392 (811)
Q Consensus 387 ~a~~~~ 392 (811)
.+.+++
T Consensus 293 ~l~~~l 298 (300)
T cd08612 293 KLREFL 298 (300)
T ss_pred HHHHHH
Confidence 877654
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family. |
| >cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=342.74 Aligned_cols=236 Identities=23% Similarity=0.239 Sum_probs=180.4
Q ss_pred eeecCCCCCCC-CCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccc
Q 003550 409 LVISKNGASGD-YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (811)
Q Consensus 409 lIIAHRGasg~-~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~ 487 (811)
+||||||+++. +||||++||++|++.|+|+||||||+||||++||+||.+|+|+|+ +.| .
T Consensus 1 ~iiaHRG~~~~~~pENTl~af~~A~~~g~d~iE~DV~~T~Dg~~vv~HD~~l~r~t~------------------~~~-~ 61 (240)
T cd08566 1 LVVAHRGGWGAGAPENSLAAIEAAIDLGADIVEIDVRRTKDGVLVLMHDDTLDRTTN------------------GKG-K 61 (240)
T ss_pred CeEecCCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCCCccccC------------------CCC-c
Confidence 48999999999 999999999999999999999999999999999999999999999 566 7
Q ss_pred ccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHH
Q 003550 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (811)
Q Consensus 488 v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~ 567 (811)
+.++||+||++++.+.++ ..+.+ ++||||+|+|+++++. ..++||+|.. ..+.+++
T Consensus 62 v~~~t~~el~~l~~~~~~----------~~~~~-~~iptL~evl~~~~~~---~~l~iEiK~~----------~~~~~~~ 117 (240)
T cd08566 62 VSDLTLAEIRKLRLKDGD----------GEVTD-EKVPTLEEALAWAKGK---ILLNLDLKDA----------DLDEVIA 117 (240)
T ss_pred hhhCcHHHHHhCCcCCCc----------CCCCC-CCCCCHHHHHHhhhcC---cEEEEEECch----------HHHHHHH
Confidence 999999999999998653 22333 7999999999999885 6899999965 1356889
Q ss_pred HHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccC-
Q 003550 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFIT- 645 (811)
Q Consensus 568 ~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~- 645 (811)
+++++++. ++|+|+||++++|+.+++. |++++++++.....+ ..........+.+ ..+.+. +..
T Consensus 118 ~~~~~~~~----~~v~~~sf~~~~l~~~~~~~p~~~~~~l~~~~~~~-----~~~~~~~~~~~~~--~~~~~~---~~~~ 183 (240)
T cd08566 118 LVKKHGAL----DQVIFKSYSEEQAKELRALAPEVMLMPIVRDAEDL-----DEEEARAIDALNL--LAFEIT---FDDL 183 (240)
T ss_pred HHHHcCCc----ccEEEEECCHHHHHHHHHhCCCCEEEEEEccCcch-----hHHHHhcccccce--EEEEEe---cccc
Confidence 99999987 6999999999999999999 999999998653111 0001111111111 112221 111
Q ss_pred CCHHHHHHHHHc-CCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCCh
Q 003550 646 SATDIVQRLQSF-KLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (811)
Q Consensus 646 ~~~~~V~~~~~~-Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P 702 (811)
.....+.++|++ |++|++||+|++....--....|...++..++ ++||||||||+|
T Consensus 184 ~~~~~~~~~~~~~Gl~v~~wTvn~~~~~~~~~~~~~~~~~~~~l~-~~Gvd~I~TD~P 240 (240)
T cd08566 184 DLPPLFDELLRALGIRVWVNTLGDDDTAGLDRALSDPREVWGELV-DAGVDVIQTDRP 240 (240)
T ss_pred ccHHHHHHHHHhCCCEEEEECCCcccccchhhhhhCchhHHHHHH-HcCCCEEecCCC
Confidence 245678888887 99999999996421000001112234677777 999999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function. |
| >cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=356.91 Aligned_cols=246 Identities=12% Similarity=0.099 Sum_probs=187.8
Q ss_pred CCEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCC
Q 003550 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (811)
Q Consensus 91 ~plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~ 170 (811)
.|.||||||+++.+||||+.||+.|++.|+| +||||||+||||++||+||.+|+||||+.+.++...
T Consensus 26 ~~~IIAHRGas~~aPENTl~AF~~Ai~~GaD--~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~g~~~~~~----------- 92 (315)
T cd08609 26 KPALVGHRGAPMLAPENTLMSLRKSLECGVV--VFETDVMVSKDGVPFLMHDEGLLRTTNVKDVFPGRD----------- 92 (315)
T ss_pred CCeEEECCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEEECCCCCEEEeCCCcccccCCCCCCccccc-----------
Confidence 4799999999999999999999999999999 999999999999999999999999999876322211
Q ss_pred cccccccCHHhhccccccccccCCCC-------------CCCCCCcccccHHHHHHhhCC--CceEEeeccchhhhhcCc
Q 003550 171 GWFSIDYTLNDLSNIILNQGVYSRTD-------------KFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNL 235 (811)
Q Consensus 171 g~~v~d~t~~eL~~l~~~~~~~~~~~-------------~~~~~~~~iptL~evl~~~~~--~~l~leiK~~~~~~~~~~ 235 (811)
.+.|.|+|++||++++++.++..+.+ .|.+ ++||||+|+|+.+++ ..++||||.+........
T Consensus 93 ~~~V~dlTlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~g--e~IPTL~EvL~~~~~~~~~l~IEIK~~~~~~~~~~ 170 (315)
T cd08609 93 AAGSNNFTWTELKTLNAGSWFLERRPFWTLSSLSEEDRREADN--QTVPSLSELLDLAKKHNVSIMFDLRNENNSHVFYS 170 (315)
T ss_pred cccHhhCCHHHHhhCCCCcccCcccccccccccccccccccCC--CCCCCHHHHHHHHHhcCCEEEEEeCCCCCCCccHH
Confidence 12589999999999999876643211 2334 799999999999965 458999997531111224
Q ss_pred hHHHHHHHHhhhcCce--EEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCC
Q 003550 236 SMRSFVLSVSRSVVVN--YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVP 313 (811)
Q Consensus 236 ~~~~~l~~~lk~~~~~--~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~ 313 (811)
++...++++++++++. .+.+++...++.+++..| ..+.++... . ...+..+.++.++
T Consensus 171 ~f~~~vl~~i~~~~~~~~~v~~~~~~~l~~~~~~~P--~~~~~~~~~-----~--------------~~~~~~~~~i~~~ 229 (315)
T cd08609 171 SFVFYTLETILKLGIPPDKVWWLPDEYRHDVMKMEP--GFKQVYGRQ-----K--------------EMLMDGGNFMNLP 229 (315)
T ss_pred HHHHHHHHHHHHcCCCcceEEEeCHHHHHHHHHhCc--Cceeecccc-----h--------------hhHhcCCeEEecc
Confidence 5778889999998852 223457888999999887 455543110 0 0011123334433
Q ss_pred CcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcchhhh
Q 003550 314 KDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVD 393 (811)
Q Consensus 314 ~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~~~~~ 393 (811)
+..+ ..++|+.+|++|++|++||||+. ++|+++++.| |||||||+|+.+.+.++
T Consensus 230 ~~~l-----------~~~~v~~~~~~G~~v~vWTVNd~------------~~~~~l~~~G---VDgIiTD~P~~l~~~~~ 283 (315)
T cd08609 230 YQDL-----------SALEIKELRKDNVSVNLWVVNEP------------WLFSLLWCSG---VSSVTTNACQLLKDMSK 283 (315)
T ss_pred cccC-----------CHHHHHHHHHCCCEEEEECCCCH------------HHHHHHHhcC---CCEEEcCCHHHHHHhhh
Confidence 3222 35799999999999999999864 8999999999 99999999999888887
Q ss_pred hhhcc
Q 003550 394 CFAHL 398 (811)
Q Consensus 394 ~~~~~ 398 (811)
-+..+
T Consensus 284 ~~~~~ 288 (315)
T cd08609 284 PIWLL 288 (315)
T ss_pred hhhhC
Confidence 66555
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia |
| >cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=352.16 Aligned_cols=253 Identities=17% Similarity=0.191 Sum_probs=182.4
Q ss_pred eecCCCCCC-----------CCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCcccccc
Q 003550 410 VISKNGASG-----------DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIP 478 (811)
Q Consensus 410 IIAHRGasg-----------~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~ 478 (811)
||||||+.. .+||||++||++|++.|||+||||||+||||+|||+||.+|+|+++...
T Consensus 2 ~ighrg~~~~~~~~~~~~~~~~~ENTl~Af~~A~~~Gad~vE~DV~lTkDg~~VV~HD~~l~r~~~g~~----------- 70 (282)
T cd08605 2 VIGHRGLGMNRASHQPSVGPGIRENTIASFIAASKFGADFVEFDVQVTRDGVPVIWHDDFIVVERGGEV----------- 70 (282)
T ss_pred eEeccCCCcCcccccccccCCCCCcHHHHHHHHHHcCCCEEEEEEEECcCCeEEEECCCceecccCCCc-----------
Confidence 799999654 3569999999999999999999999999999999999999999987110
Q ss_pred ccccCccccccCCCHHHHhccCccccCCccc----ccccCCcC---C--CCCCCCCCHHHHHHHHHhcCCCceEEEEecc
Q 003550 479 EIMAGSGIFSFSLIWDEIQTLIPQISNPYFK----FKLFRNPK---N--KNAGKFMKLSDFLEMAKNANSLSGVLISIEN 549 (811)
Q Consensus 479 ~~~~~~G~~v~dlT~~ELk~L~~~~~~p~~~----~~~~rn~~---~--~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~ 549 (811)
..| .|.++||+||++|+++.+..+.. +.+...+. + ...++||||+|+|++++.. .+++||||.
T Consensus 71 ----~~~-~V~dlT~~EL~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~---~~l~IEiK~ 142 (282)
T cd08605 71 ----ESS-RIRDLTLAELKALGPQAESTKTSTVALYRKAKDPEPEPWIMDVEDSIPTLEEVFSEVPPS---LGFNIELKF 142 (282)
T ss_pred ----Ccc-chhhCcHHHHHhccccccccccCcchhhccccccccccccccccCCCCCHHHHHHhCCCC---ccEEEEEec
Confidence 245 79999999999999876532100 00000000 0 1237899999999999654 689999996
Q ss_pred hhHHH-hhcC-ccHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEcccc---chhchHhHHHHH
Q 003550 550 AVYLA-EKQG-MSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENI---RDALNQTIEDIK 623 (811)
Q Consensus 550 ~~~~~-~~~g-~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~---~d~~~~~l~~i~ 623 (811)
+.... .... ..++++++++++++++. ++|+|+|||+.+|.+++++ |+++++++++... .+.....+....
T Consensus 143 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~----~~viisSF~~~~l~~l~~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~ 218 (282)
T cd08605 143 GDDNKTEAEELVRELRAILAVCKQHAPG----RRIMFSSFDPDAAVLLRALQSLYPVMFLTDCGPYTHNDPRRNSIEAAI 218 (282)
T ss_pred CccccchHHHHHHHHHHHHHHHHhcCCC----CeEEEEeCCHHHHHHHHhcCccCCEEEEecCCCccccCchhhhHHHHH
Confidence 53210 0000 11356788888888876 6999999999999999999 9999999986421 122122223333
Q ss_pred HhhhhhccccceeecCCccccCCCHHHHHHHHHcCCcEEEEec--CCcccccccccCCChHHHHHHHHHhcCCCEEEeCC
Q 003550 624 KFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETF--SNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (811)
Q Consensus 624 ~~a~~v~~~~~~i~p~~~~~l~~~~~~V~~~~~~Gl~V~vwtv--nne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~ 701 (811)
.++..++. ..+.+.. ..+...+++|+++|++|+.|++||+ |++. ++.+++ ++||||||||+
T Consensus 219 ~~~~~~~~--~~~~~~~-~~l~~~~~~v~~~~~~Gl~v~vWTv~~n~~~-------------~~~~l~-~~GVdgIiTD~ 281 (282)
T cd08605 219 QVALEGGL--QGIVSEV-KVLLRNPTAVSLVKASGLELGTYGKLNNDAE-------------AVERQA-DLGVDGVIVDH 281 (282)
T ss_pred HHHHHcCC--ceEEecH-HHhhcCcHHHHHHHHcCcEEEEeCCCCCCHH-------------HHHHHH-HcCCCEEEeCC
Confidence 33333333 1222221 1222467899999999999999998 7663 578887 99999999998
Q ss_pred h
Q 003550 702 P 702 (811)
Q Consensus 702 P 702 (811)
+
T Consensus 282 ~ 282 (282)
T cd08605 282 V 282 (282)
T ss_pred C
Confidence 6
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs. |
| >cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=340.91 Aligned_cols=222 Identities=16% Similarity=0.210 Sum_probs=166.4
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCccc
Q 003550 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (811)
Q Consensus 94 viaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~ 173 (811)
||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+|++.+ .
T Consensus 1 iiaHRG~~~~~PENTl~Af~~A~~~gad--~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~-------------------~ 59 (229)
T cd08581 1 LVAHRGYPARYPENTLVGFRAAVDAGAR--FVEFDVQLSADGVPVVFHDDTLLRLTGVEG-------------------L 59 (229)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHcCCC--EEEEeeeECCCCcEEEECCCccccccCCCc-------------------e
Confidence 6899999999999999999999999999 999999999999999999999999998775 7
Q ss_pred ccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC---CceEEeeccchhhhhcCchHHHHHHHHhhhcC-
Q 003550 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP---PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVV- 249 (811)
Q Consensus 174 v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~---~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~- 249 (811)
+.++|++||+++++..+. +....|.+ ++||||+|+|++++. ..++||+|.+.... ..+.+.+..+++..+
T Consensus 60 v~~~t~~el~~l~~~~~~-~~~~~~~~--~~iptL~evl~~~~~~~~~~l~iEiK~~~~~~---~~~~~~v~~~~~~~~~ 133 (229)
T cd08581 60 LHELEDAELDSLRVAEPA-RFGSRFAG--EPLPSLAAVVQWLAQHPQVTLFVEIKTESLDR---FGLERVVDKVLRALPA 133 (229)
T ss_pred eccCCHHHHhhcccccCc-ccccccCC--ccCCCHHHHHHHHhhCCCceEEEEecCCcccc---cchhHHHHHHHHHHHh
Confidence 999999999999875432 22345655 799999999999864 57999999765321 223334444444432
Q ss_pred ---ceEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCcccccCCCcccC
Q 003550 250 ---VNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYL 326 (811)
Q Consensus 250 ---~~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~~i~~~~~~~~l 326 (811)
-.+|+||+...|+++++. | ..++.+++..... .. .. .+..+++ .++.+.. . +
T Consensus 134 ~~~~~~i~SF~~~~l~~~r~~-~--~~~~~~l~~~~~~---------~~----~~----~~~~~~~--~~~~~~~--~-~ 188 (229)
T cd08581 134 VAAQRVLISFDYDLLALAKQQ-G--GPRTGWVLPDWDD---------AS----LA----EADELQP--DYLFCDK--N-L 188 (229)
T ss_pred ccCCeEEEeCCHHHHHHHHhc-C--CCCeEEEeccCCh---------HH----HH----HHHhhCC--CEEeccc--c-c
Confidence 358999999999999998 6 5666654321100 00 01 1111211 1111110 0 1
Q ss_pred CCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCC
Q 003550 327 LPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (811)
Q Consensus 327 ~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P 385 (811)
...++++|++|++|++||||++ ++|++++++| |||||||+|
T Consensus 189 ---~~~v~~~~~~G~~v~vWTVn~~------------~~~~~l~~~G---VdgiiTD~P 229 (229)
T cd08581 189 ---LPDTGDLWAGTWKWVIYEVNEP------------AEALALAARG---VALIETDNI 229 (229)
T ss_pred ---ChhhHHHHhCCceEEEEEcCCH------------HHHHHHHHhC---CcEEEcCCC
Confidence 1358889999999999999875 8999999999 999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=342.24 Aligned_cols=231 Identities=15% Similarity=0.110 Sum_probs=177.7
Q ss_pred CCEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCC
Q 003550 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (811)
Q Consensus 91 ~plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~ 170 (811)
.|.||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|++.+
T Consensus 7 ~~~iiaHRG~~~~~pENT~~Af~~A~~~G~d--~vE~DV~lT~Dg~lVV~HD~~l~R~t~~~~----------------- 67 (249)
T PRK09454 7 YPRIVAHRGGGKLAPENTLAAIDVGARYGHR--MIEFDAKLSADGEIFLLHDDTLERTSNGWG----------------- 67 (249)
T ss_pred CCeEEECCCCCCCCChHHHHHHHHHHHcCCC--EEEEEeeECCCCCEEEECCCcccccCCCCC-----------------
Confidence 5899999999999999999999999999999 999999999999999999999999998875
Q ss_pred cccccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--CceEEeeccchhhhhcCchHHHHHHHHhhhc
Q 003550 171 GWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSV 248 (811)
Q Consensus 171 g~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~--~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~ 248 (811)
.+.++||+||++++++.++ ...|.+ ++||||+|+|++++. ..++||+|...... ..+...+..+.+..
T Consensus 68 --~v~~~t~~el~~l~~~~~~---~~~~~~--~~iPtL~evl~~~~~~~~~l~iEiK~~~~~~---~~~~~~v~~~~~~~ 137 (249)
T PRK09454 68 --VAGELTWQDLAQLDAGSWF---SAAFAG--EPLPTLSQVAARCRAHGMAANIEIKPTTGRE---AETGRVVALAARAL 137 (249)
T ss_pred --chhhCCHHHHHhcCCCCcc---CCCCCC--CcCCCHHHHHHHHHhcCCEEEEEECCCCCcc---hhHHHHHHHHHHHH
Confidence 7899999999999998754 345555 799999999999853 56899999542111 12233333333332
Q ss_pred -----CceEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhh-cccccCCCcccccCCC
Q 003550 249 -----VVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTF-ASGILVPKDYIWPVDE 322 (811)
Q Consensus 249 -----~~~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~-a~gi~~~~~~i~~~~~ 322 (811)
+..+++||+...|+.+++..| ..+..+++.... ..+. ...+.. +.++.+.+.
T Consensus 138 ~~~~~~~v~v~SF~~~~l~~l~~~~p--~~~~~~l~~~~~-------~~~~------~~~~~~~~~~~~~~~~------- 195 (249)
T PRK09454 138 WAGAAVPPLLSSFSEDALEAARQAAP--ELPRGLLLDEWP-------DDWL------ELTRRLGCVSLHLNHK------- 195 (249)
T ss_pred hcCCCCCEEEEeCCHHHHHHHHHhCC--CCcEEEEecccc-------ccHH------HHHHhcCCeEEecccc-------
Confidence 235899999999999999988 677776442111 1111 111111 223333222
Q ss_pred cccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcchh
Q 003550 323 SLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAA 391 (811)
Q Consensus 323 ~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~~~ 391 (811)
...+.+|+.+|++|++|++||||++ ++|+++++.| ||||+||+|+.+...
T Consensus 196 ----~~~~~~v~~~~~~g~~v~~WTvn~~------------~~~~~l~~~G---VdgIiTD~p~~~~~~ 245 (249)
T PRK09454 196 ----LLDEARVAALKAAGLRILVYTVNDP------------ARARELLRWG---VDCICTDRIDLIGPD 245 (249)
T ss_pred ----cCCHHHHHHHHHCCCEEEEEeCCCH------------HHHHHHHHcC---CCEEEeCChHhcCcc
Confidence 2246799999999999999999865 8999999999 999999999976544
|
|
| >cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=358.20 Aligned_cols=241 Identities=13% Similarity=0.094 Sum_probs=182.7
Q ss_pred CCEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCC
Q 003550 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (811)
Q Consensus 91 ~plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~ 170 (811)
.|+||||||+++.+||||+.||++|++.|+| +||+|||+||||++||+||.+|+||||+.+.+++++..
T Consensus 1 ~p~IIAHRGas~~aPENTL~AF~~A~~~GaD--~IElDV~lTkDGvlVV~HD~tL~RtTn~~g~v~~~~~~--------- 69 (351)
T cd08608 1 KPAIIGHRGAPMLAPENTLMSFQKALEQKVY--GLQADVTISLDGVPFLMHDRTLRRTTNVDRVFPERQYE--------- 69 (351)
T ss_pred CCeEEEcCCCCCCCCcchHHHHHHHHHcCCC--EEEEEeeEccCCcEEEECCCccccccCCCCcccccccc---------
Confidence 3789999999999999999999999999999 99999999999999999999999999998866655433
Q ss_pred cccccccCHHhhccccccccccCCCC-------------CCCCCCcccccHHHHHHhhCC--CceEEeeccchhhhhcCc
Q 003550 171 GWFSIDYTLNDLSNIILNQGVYSRTD-------------KFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNL 235 (811)
Q Consensus 171 g~~v~d~t~~eL~~l~~~~~~~~~~~-------------~~~~~~~~iptL~evl~~~~~--~~l~leiK~~~~~~~~~~ 235 (811)
.+.++||+||++++++.++..+.+ .|.| ++||||+|+|+++++ ..++||||.+........
T Consensus 70 --~~~~~TlaEL~~LdaG~wf~~~~p~~~~~~~~~~~~~~~~g--e~IPTL~EvL~~~~~~~~~l~iEIK~~~~~~~~~~ 145 (351)
T cd08608 70 --DASMFNWTDLERLNAGQWFLKDDPFWTAQSLSPSDRKEAGN--QSVCSLAELLELAKRYNASVLLNLRRPPPNHPYHQ 145 (351)
T ss_pred --ccccCCHHHHhhCCCCcccccCCccccccccccccccccCC--CCCCCHHHHHHHHHhcCCeEEEEECCCcccCcchh
Confidence 568999999999999986643221 3444 799999999999975 468999996431111123
Q ss_pred hHHHHHHHHhhhcCc----eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHh-hcccc
Q 003550 236 SMRSFVLSVSRSVVV----NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGI 310 (811)
Q Consensus 236 ~~~~~l~~~lk~~~~----~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~-~a~gi 310 (811)
.+++.+++++++++. .+++||+. ++.+++..| ..++.. ... . ....++. .+.++
T Consensus 146 ~~~~~v~~~i~~~~~~~~~vi~sSf~~--~~~vr~l~P--~~~~~~---~~~--~------------~~~~~~~~~~~~l 204 (351)
T cd08608 146 SWINLTLKTILASGIPQEQVMWTPDWQ--RKLVRKVAP--GFQQTS---GEK--L------------PVASLRERGITRL 204 (351)
T ss_pred HHHHHHHHHHHHhCCCcCeEEEEcchH--HHHHHHHCC--CCeeec---ccc--c------------hHHHHHHcCCeEE
Confidence 566778888887765 35577765 477888887 444321 000 0 0111221 23444
Q ss_pred cCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcch
Q 003550 311 LVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSA 390 (811)
Q Consensus 311 ~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~~ 390 (811)
.+++..+ ..++|+++|++|++|++||||+. ++|+++++.| ||||+||+|+.+.+
T Consensus 205 ~~~~~~l-----------t~~~v~~~~~~Gl~V~vWTVN~~------------~~~~~l~~~G---VdgIiTD~P~~l~~ 258 (351)
T cd08608 205 NLRYTQA-----------SAQEIRDYSASNLSVNLYTVNEP------------WLYSLLWCSG---VPSVTSDASHVLRK 258 (351)
T ss_pred ccchhhc-----------CHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHHCC---CCEEEECCHHHHHH
Confidence 4443322 36799999999999999999864 8999999999 99999999998876
Q ss_pred hhh
Q 003550 391 AVD 393 (811)
Q Consensus 391 ~~~ 393 (811)
...
T Consensus 259 l~~ 261 (351)
T cd08608 259 VPF 261 (351)
T ss_pred hhh
Confidence 554
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti |
| >cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=334.65 Aligned_cols=223 Identities=19% Similarity=0.183 Sum_probs=177.5
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCccc
Q 003550 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (811)
Q Consensus 94 viaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~ 173 (811)
||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+|++.+ .
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~gad--~iE~Dv~~TkDg~lvv~HD~~l~r~t~~~~-------------------~ 59 (229)
T cd08562 1 IIAHRGASSLAPENTLAAFRAAAELGVR--WVEFDVKLSGDGTLVLIHDDTLDRTTNGSG-------------------A 59 (229)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCC--EEEEEEeECCCCCEEEEcCCCCccccCCCc-------------------e
Confidence 6899999999999999999999999999 999999999999999999999999998765 7
Q ss_pred ccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--CceEEeeccchhhhhcCchHHHHHHHHhhhcCc-
Q 003550 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV- 250 (811)
Q Consensus 174 v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~--~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~~- 250 (811)
+.++|++||++++++.++ .+.|.+ ++||||+|+|+++++ ..++||||.+... ...+++.+++++++++.
T Consensus 60 i~~lt~~el~~l~~~~~~---~~~~~~--~~iptl~evl~~~~~~~~~l~iEiK~~~~~---~~~~~~~v~~~l~~~~~~ 131 (229)
T cd08562 60 VTELTWAELAQLDAGSWF---SPEFAG--EPIPTLADVLELARELGLGLNLEIKPDPGD---EALTARVVAAALRELWPH 131 (229)
T ss_pred eecCcHHHHhhcCCCccc---CCCCCC--CCCCCHHHHHHHHHhcCCEEEEEECCCCCc---cHHHHHHHHHHHHHhcCC
Confidence 999999999999987643 334444 799999999999964 5799999965421 24567788889888865
Q ss_pred ---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCcccccCCCcccCC
Q 003550 251 ---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLL 327 (811)
Q Consensus 251 ---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~~i~~~~~~~~l~ 327 (811)
.+++||+.+.|+.+++..| ..++.+++.... ..+..+ +..+ .+.++.+...+
T Consensus 132 ~~~v~~~Sf~~~~l~~~~~~~p--~~~~~~l~~~~~-------~~~~~~---~~~~--~~~~~~~~~~~----------- 186 (229)
T cd08562 132 ASKLLLSSFSLEALRAARRAAP--ELPLGLLFDTLP-------ADWLEL---LAAL--GAVSIHLNYRG----------- 186 (229)
T ss_pred cCCEEEECCCHHHHHHHHHhCC--CCcEEEEecCCC-------cCHHHH---HHHc--CCeEEecChhh-----------
Confidence 4899999999999999988 567766332110 011111 1111 13333333222
Q ss_pred CChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCC
Q 003550 328 PHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (811)
Q Consensus 328 ~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P 385 (811)
...++|+.+|++|++|++||+|+. ++++++++.| ||||+||+|
T Consensus 187 ~~~~~v~~~~~~g~~v~~wTvn~~------------~~~~~~~~~g---VdgiiTD~p 229 (229)
T cd08562 187 LTEEQVKALKDAGYKLLVYTVNDP------------ARAAELLEWG---VDAIFTDRP 229 (229)
T ss_pred CCHHHHHHHHHCCCEEEEEeCCCH------------HHHHHHHHCC---CCEEEcCCC
Confidence 236799999999999999999875 8999999999 999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG) |
| >cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=346.80 Aligned_cols=241 Identities=21% Similarity=0.200 Sum_probs=179.2
Q ss_pred CEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCc
Q 003550 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (811)
Q Consensus 92 plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g 171 (811)
|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++.+
T Consensus 1 p~iiaHRG~~~~~pENTl~af~~A~~~G~d--~iE~DV~lT~Dg~~Vv~HD~~l~r~t~~~~------------------ 60 (264)
T cd08575 1 PLHIAHRGGAAEFPENTIAAFRHAVKNGAD--MLELDVQLTKDGQVVVFHDWDLDRLTGGSG------------------ 60 (264)
T ss_pred CeEEEeCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEEECCCCCEEEEcCCcccceeCCce------------------
Confidence 689999999999999999999999999999 999999999999999999999999998775
Q ss_pred ccccccCHHhhccccccccccCC------CCCCCCCCcccccHHHHHHhhCCCceEEeeccchhhhhcCchHHHHHHHHh
Q 003550 172 WFSIDYTLNDLSNIILNQGVYSR------TDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVS 245 (811)
Q Consensus 172 ~~v~d~t~~eL~~l~~~~~~~~~------~~~~~~~~~~iptL~evl~~~~~~~l~leiK~~~~~~~~~~~~~~~l~~~l 245 (811)
.+.++|++||++++++.++... ...+. +++||||+|+|+.+++..++||+|.+.. ..+++.+++++
T Consensus 61 -~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~--~~~iptL~evl~~~~~~~l~iEiK~~~~-----~~~~~~v~~~i 132 (264)
T cd08575 61 -LVSDLTYAELPPLDAGYGYTFDGGKTGYPRGGG--DGRIPTLEEVFKAFPDTPINIDIKSPDA-----EELIAAVLDLL 132 (264)
T ss_pred -EEecCCHHHHHhcccCCccccCCCCcccccCCC--CCcCCcHHHHHHhCCCCeEEEEECCCCH-----HHHHHHHHHHH
Confidence 7999999999999988754221 11223 3799999999999988889999997542 45778899999
Q ss_pred hhcCc---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHh-hh-H--HHHHhhcccccCCCc---
Q 003550 246 RSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLL-KN-L--TFIKTFASGILVPKD--- 315 (811)
Q Consensus 246 k~~~~---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~-~~-L--~~i~~~a~gi~~~~~--- 315 (811)
+++++ .+++||+.+.|+++++..| +.++.+.+-..-. .|..+. .+ + ...+..+.++.+...
T Consensus 133 ~~~~~~~~~~~~Sf~~~~l~~~~~~~p--~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (264)
T cd08575 133 EKYKREDRTVWGSTNPEYLRALHPENP--NLFESFSMTRCLL-------LYLALGYTGLLPFVPIKESFFEIPRPVIVLE 203 (264)
T ss_pred HhccccceEEEEeCCHHHHHHHHHhCc--ccccccCchhHHH-------HHHHhheeccCCCCCCCceEEEeecccEEEE
Confidence 98876 4999999999999999887 4443321100000 000000 00 0 000000001111100
Q ss_pred -------ccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCc
Q 003550 316 -------YIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTP 388 (811)
Q Consensus 316 -------~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a 388 (811)
.+.+ .|....+++|+.+|++|++|++||||+. ++|++++++| ||||+||+|+.+
T Consensus 204 ~~~~~~~~~~~----~~~~~~~~~v~~~~~~G~~v~vWTVNd~------------~~~~~l~~~G---VdgIiTD~P~~~ 264 (264)
T cd08575 204 TFTLGEGASIV----AALLWWPNLFDHLRKRGIQVYLWVLNDE------------EDFEEAFDLG---ADGVMTDSPTKL 264 (264)
T ss_pred Eeccccccchh----hhhhcCHHHHHHHHhcCCcEEEEEECCH------------HHHHHHHhcC---CCEEEeCCcccC
Confidence 0001 1223457899999999999999999875 8999999999 999999999853
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4. |
| >cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=337.37 Aligned_cols=228 Identities=16% Similarity=0.151 Sum_probs=176.2
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCccc
Q 003550 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (811)
Q Consensus 94 viaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~ 173 (811)
||||||+++.+||||+.||+.|++.|+| +||+|||+||||++||+||.+++|+|++.+ .
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~d--~iE~DV~~TkDg~~Vv~HD~~l~r~t~~~g-------------------~ 59 (235)
T cd08565 1 IAGHRGGRNLWPENTLEGFRKALELGVD--AVEFDVHLTADGEVVVIHDPTLDRTTHGTG-------------------A 59 (235)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCC--EEEEeEEEccCCCEEEECCChhhcccCCCC-------------------c
Confidence 6899999999999999999999999999 999999999999999999999999998765 7
Q ss_pred ccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--CceEEeeccchhhhhcCchHHHHHHHHhhhcCc-
Q 003550 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV- 250 (811)
Q Consensus 174 v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~--~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~~- 250 (811)
+.++|++||++++++.++ | ++||||+|+|+++++ ..++||+|.+.. ......+++.++++++++++
T Consensus 60 v~~~t~~el~~l~~~~~~--------~--~~iptL~evl~~~~~~~~~l~iEiK~~~~-~~~~~~~~~~v~~~i~~~~~~ 128 (235)
T cd08565 60 VRDLTLAERKALRLRDSF--------G--EKIPTLEEVLALFAPSGLELHVEIKTDAD-GTPYPGAAALAAATLRRHGLL 128 (235)
T ss_pred eeeccHHHHhcCCCCCCC--------C--CCCCCHHHHHHHhhccCcEEEEEECCCCC-CCccHHHHHHHHHHHHhCCCc
Confidence 999999999999987532 3 699999999999964 579999996531 11123577889999998876
Q ss_pred --eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHH-HhhcccccCCCcccccCCCcccCC
Q 003550 251 --NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFI-KTFASGILVPKDYIWPVDESLYLL 327 (811)
Q Consensus 251 --~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i-~~~a~gi~~~~~~i~~~~~~~~l~ 327 (811)
.+++||+.+.|+++++. | ..++.+++ +......... +. .+... ...+.++.++..+. .
T Consensus 129 ~~v~~~Sf~~~~l~~~~~~-p--~~~~~~l~-~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~---------~ 189 (235)
T cd08565 129 ERSVLTSFDPAVLTEVRKH-P--GVRTLGSV-DEDMLERLGG--EL----PFLTATALKAHIVAVEQSLL---------A 189 (235)
T ss_pred CCEEEEECCHHHHHHHHhC-C--CCcEEEEe-cccccccccc--cc----chhhhhhccCcEEccCcccc---------c
Confidence 49999999999999999 8 67777643 2111110000 00 00011 11233344433221 1
Q ss_pred CChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCc
Q 003550 328 PHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTP 388 (811)
Q Consensus 328 ~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a 388 (811)
...++|+++|+ |++|++||||+. ++|+++++.| ||||+||+|+.+
T Consensus 190 ~~~~~v~~~~~-g~~v~~WTVn~~------------~~~~~l~~~G---VdgIiTD~P~~~ 234 (235)
T cd08565 190 ATWELVRAAVP-GLRLGVWTVNDD------------SLIRYWLACG---VRQLTTDRPDLA 234 (235)
T ss_pred CCHHHHHHHhC-CCEEEEEccCCH------------HHHHHHHHcC---CCEEEeCCcccc
Confidence 23678999975 999999999864 8999999999 999999999865
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=331.77 Aligned_cols=225 Identities=19% Similarity=0.210 Sum_probs=180.6
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCccc
Q 003550 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (811)
Q Consensus 94 viaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~ 173 (811)
||||||+++.+||||++||+.|++.|++ ++|||||+||||++||+||.+++|+|++.+ .
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~~--~vE~Dv~lTkDg~~Vv~HD~~l~r~t~~~~-------------------~ 59 (233)
T cd08582 1 VIAHRGASAEAPENTLAAFELAWEQGAD--GIETDVRLTKDGELVCVHDPTLKRTSGGDG-------------------A 59 (233)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCC--EEEEEEEEccCCCEEEecCCccccccCCCc-------------------c
Confidence 6899999999999999999999999999 999999999999999999999999998775 7
Q ss_pred ccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--CceEEeeccchhhhhcCchHHHHHHHHhhhcC-c
Q 003550 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVV-V 250 (811)
Q Consensus 174 v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~--~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~-~ 250 (811)
+.++||+||++++++.++. ..|.+ ++||||+|+|+++++ ..++||+|.+ .....+...+++++++++ .
T Consensus 60 i~~~t~~el~~l~~~~~~~---~~~~~--~~iptL~evl~~~~~~~~~l~ieiK~~----~~~~~~~~~~~~~~~~~~~~ 130 (233)
T cd08582 60 VSDLTLAELRKLDIGSWKG---ESYKG--EKVPTLEEYLAIVPKYGKKLFIEIKHP----RRGPEAEEELLKLLKESGLL 130 (233)
T ss_pred hhhCCHHHHhcCCCCcccC---CCCCC--CcCCCHHHHHHHHHhcCceEEEEeCCC----ccCccHHHHHHHHHHHcCCC
Confidence 8999999999999876542 34444 799999999999976 6799999975 123457788999999884 2
Q ss_pred ---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHH-hhcccccCCCcccccCCCcccC
Q 003550 251 ---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIK-TFASGILVPKDYIWPVDESLYL 326 (811)
Q Consensus 251 ---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~-~~a~gi~~~~~~i~~~~~~~~l 326 (811)
.+++||+...++.+++..| +.++.|+......... .. ...+ ..+.++.++...
T Consensus 131 ~~~v~~~Sf~~~~l~~~~~~~p--~~~~~~l~~~~~~~~~------~~-----~~~~~~~~~~i~~~~~~---------- 187 (233)
T cd08582 131 PEQIVIISFDAEALKRVRELAP--TLETLWLRNYKSPKED------PR-----PLAKSGGAAGLDLSYEK---------- 187 (233)
T ss_pred CCCEEEEecCHHHHHHHHHHCC--CCcEEEEeccCccccc------hh-----HHHHhhCceEEcccccc----------
Confidence 4999999999999999998 5777764432211000 00 0111 124555543321
Q ss_pred CCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCC
Q 003550 327 LPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPL 386 (811)
Q Consensus 327 ~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~ 386 (811)
...+++|+.+|++|++|++||+|+. ++|+++++.| ||||+||+|.
T Consensus 188 ~~~~~~v~~~~~~G~~v~~wTvn~~------------~~~~~l~~~G---Vdgi~TD~p~ 232 (233)
T cd08582 188 KLNPAFIKALRDAGLKLNVWTVDDA------------EDAKRLIELG---VDSITTNRPG 232 (233)
T ss_pred cCCHHHHHHHHHCCCEEEEEeCCCH------------HHHHHHHHCC---CCEEEcCCCC
Confidence 1247899999999999999999865 8999999999 9999999996
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=329.98 Aligned_cols=224 Identities=21% Similarity=0.275 Sum_probs=179.9
Q ss_pred CEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCc
Q 003550 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (811)
Q Consensus 92 plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g 171 (811)
++||||||+++.+||||++||+.|++.|++ +||||||+||||++||+||.+++|+|++.+
T Consensus 1 ~~iiaHRG~~~~~pENT~~Af~~A~~~g~~--~vE~DV~~TkDg~~Vv~HD~~l~r~t~~~~------------------ 60 (230)
T cd08563 1 TLIFAHRGYSGTAPENTLLAFKKAIEAGAD--GIELDVHLTKDGQLVVIHDETVDRTTNGKG------------------ 60 (230)
T ss_pred CeEEEccCCCCCCCchhHHHHHHHHHcCCC--EEEEEeeEcCCCCEEEECCCCcccccCCCC------------------
Confidence 369999999999999999999999999999 999999999999999999999999998765
Q ss_pred ccccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--CceEEeeccchhhhhcCchHHHHHHHHhhhcC
Q 003550 172 WFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVV 249 (811)
Q Consensus 172 ~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~--~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~ 249 (811)
.+.++||+||++++++.++. ..+.+ ++||||+|+++++++ ..++||+|.+... ...+++.+++++++++
T Consensus 61 -~i~~~t~~el~~l~~~~~~~---~~~~~--~~iptL~evl~~~~~~~~~l~leiK~~~~~---~~~~~~~l~~~l~~~~ 131 (230)
T cd08563 61 -YVKDLTLEELKKLDAGSWFD---EKFTG--EKIPTLEEVLDLLKDKDLLLNIEIKTDVIH---YPGIEKKVLELVKEYN 131 (230)
T ss_pred -chhhCCHHHHHhcCCCCccC---ccCCC--CcCCCHHHHHHHHHhcCcEEEEEECCCCCc---ChhHHHHHHHHHHHcC
Confidence 79999999999999987543 23333 699999999999973 5799999976422 1357788999999987
Q ss_pred c---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhh-cccccCCCcccccCCCccc
Q 003550 250 V---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTF-ASGILVPKDYIWPVDESLY 325 (811)
Q Consensus 250 ~---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~-a~gi~~~~~~i~~~~~~~~ 325 (811)
+ .+++||+.+.++.+++..| ..++.++.... ... ....++.. +.++.+...+
T Consensus 132 ~~~~v~~~Sf~~~~l~~~~~~~p--~~~~~~l~~~~-~~~------------~~~~~~~~~~~~v~~~~~~--------- 187 (230)
T cd08563 132 LEDRVIFSSFNHESLKRLKKLDP--KIKLALLYETG-LQD------------PKDYAKKIGADSLHPDFKL--------- 187 (230)
T ss_pred CCCCEEEEcCCHHHHHHHHHHCC--CCcEEEEecCc-ccC------------HHHHHHHhCCEEEccCchh---------
Confidence 5 4999999999999999988 56776633211 100 01112211 2344433222
Q ss_pred CCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCC
Q 003550 326 LLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (811)
Q Consensus 326 l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P 385 (811)
..+++++.+|++|++|++||||+. +++.+++++| ||||+||+|
T Consensus 188 --~~~~~i~~~~~~g~~v~~Wtvn~~------------~~~~~~~~~G---Vdgi~TD~P 230 (230)
T cd08563 188 --LTEEVVEELKKRGIPVRLWTVNEE------------EDMKRLKDLG---VDGIITNYP 230 (230)
T ss_pred --cCHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHHCC---CCEEeCCCC
Confidence 246799999999999999999864 8999999999 999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE. |
| >cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=330.26 Aligned_cols=220 Identities=17% Similarity=0.128 Sum_probs=171.0
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCcc
Q 003550 93 FVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGW 172 (811)
Q Consensus 93 lviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~ 172 (811)
+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++.+
T Consensus 1 ~iiaHRG~~~~~pENTl~af~~A~~~Gad--~iE~DV~lT~Dg~~Vv~HD~~l~R~t~~~g------------------- 59 (226)
T cd08568 1 IILGHRGYRAKYPENTLEAFKKAIEYGAD--GVELDVWLTKDGKLVVLHDENLKRVGGVDL------------------- 59 (226)
T ss_pred CEEeccCCCCCCCcchHHHHHHHHHcCcC--EEEEEEEEcCCCCEEEECCCcccccCCCCc-------------------
Confidence 48999999999999999999999999999 999999999999999999999999998775
Q ss_pred cccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC-CceEEeeccchhhhhcCchHHHHHHHHhhhcCc-
Q 003550 173 FSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV- 250 (811)
Q Consensus 173 ~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~-~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~~- 250 (811)
.+.++|++||++++++ | ++||||+|+|+++++ ..++||||.+. ..+.+++++++++.
T Consensus 60 ~v~~~t~~eL~~l~~~-----------g--~~iPtL~evl~~~~~~~~l~iEiK~~~--------~~~~~~~~l~~~~~~ 118 (226)
T cd08568 60 KVKELTYKELKKLHPG-----------G--ELIPTLEEVFRALPNDAIINVEIKDID--------AVEPVLEIVEKFNAL 118 (226)
T ss_pred eeecCCHHHHhhCCCC-----------C--CcCCCHHHHHHhcCCCcEEEEEECCcc--------HHHHHHHHHHHcCCC
Confidence 7999999999999874 2 699999999999976 67999999642 35678888888874
Q ss_pred --eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHh-hcccccCCCcccccCCCcccCC
Q 003550 251 --NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVDESLYLL 327 (811)
Q Consensus 251 --~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~-~a~gi~~~~~~i~~~~~~~~l~ 327 (811)
.+++||+.+.|+.+++..| ..++.++....... .... ...+. .+.++.++...+.-. . ..
T Consensus 119 ~~v~i~SF~~~~l~~~~~~~p--~~~~~~l~~~~~~~-----~~~~------~~~~~~~~~~~~~~~~~~~~~---~-~~ 181 (226)
T cd08568 119 DRVIFSSFNHDALRELRKLDP--DAKVGLLIGEEEEG-----FSIP------ELHEKLKLYSLHVPIDAIGYI---G-FE 181 (226)
T ss_pred CcEEEEECCHHHHHHHHHhCC--CCcEEEEeeccccc-----cCHH------HHHHhcCCcEeccchhhhccc---c-cc
Confidence 4999999999999999998 56777643221110 0000 11111 123334332222100 0 11
Q ss_pred CChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCC
Q 003550 328 PHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLT 387 (811)
Q Consensus 328 ~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~ 387 (811)
..+++|+.+|++|++|++||||+. ++++++.. + ||||+||+|+.
T Consensus 182 ~~~~~v~~~~~~G~~v~~WTvn~~------------~~~~~l~~-~---vdgiiTD~p~~ 225 (226)
T cd08568 182 KFVELLRLLRKLGLKIVLWTVNDP------------ELVPKLKG-L---VDGVITDDVEK 225 (226)
T ss_pred ccHHHHHHHHHCCCEEEEEcCCCH------------HHHHHHHh-h---CCEEEccCccc
Confidence 136799999999999999999864 78887764 6 99999999985
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form. |
| >cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=338.52 Aligned_cols=243 Identities=19% Similarity=0.184 Sum_probs=183.9
Q ss_pred CCCEEEEeCCCCCC--CCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCC--------Ccchhhhhcccc
Q 003550 90 DPPFVVARGGFSGI--FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDN--------ASNIAQIFKTQQ 159 (811)
Q Consensus 90 ~~plviaHRG~~~~--~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~r--------tT~~~~~~~~~~ 159 (811)
.+|+||||||+++. +||||++||+.|++.|+| +||+|||+||||++||+||.++++ ++++.+
T Consensus 2 ~~~~iiaHRG~~~~~~~pENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~~~~~~~~~~~~~~~~~~------ 73 (265)
T cd08564 2 VRPIIVGHRGAGCSTLYPENTLPSFRRALEIGVD--GVELDVFLTKDNEIVVFHGTEDDTNPDTSIQLDDSGFK------ 73 (265)
T ss_pred CCceEEEeCCCCCCCCCCchhHHHHHHHHHcCCC--EEEEeeEECCCCCEEEEcCCccccCccccccccCCCcc------
Confidence 36899999999988 999999999999999999 999999999999999999987766 333322
Q ss_pred cccccCCCCCCcccccccCHHhhccccccccccCCC---CCCCCCCcccccHHHHHHhhCC-CceEEeeccchhhhhcCc
Q 003550 160 KNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRT---DKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNL 235 (811)
Q Consensus 160 ~~y~~~G~~~~g~~v~d~t~~eL~~l~~~~~~~~~~---~~~~~~~~~iptL~evl~~~~~-~~l~leiK~~~~~~~~~~ 235 (811)
.+.++|++||++++++.++.... ..+. +++||||+|+|+++++ .+++||||.+. .
T Consensus 74 -------------~v~~~t~~el~~l~~~~~~~~~~~~~~~~~--~~~iptL~evl~~~~~~~~l~iEiK~~~------~ 132 (265)
T cd08564 74 -------------NINDLSLDEITRLHFKQLFDEKPCGADEIK--GEKIPTLEDVLVTFKDKLKYNIELKGRE------V 132 (265)
T ss_pred -------------chhhCcHHHHhhcccCcccccCcccccccC--CccCCCHHHHHHHhccCcEEEEEeCCCc------h
Confidence 79999999999999987664321 1233 4799999999999976 67999999653 3
Q ss_pred hHHHHHHHHhhhcCc---eEEecCCH-HHHHHHHHhcCCC-CcceeeeecCCCccCCCcccchHHHhhhHHHHHh-hccc
Q 003550 236 SMRSFVLSVSRSVVV---NYISSPEV-NFLRSIAARFRPS-MTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASG 309 (811)
Q Consensus 236 ~~~~~l~~~lk~~~~---~~isSf~~-~~L~~l~~~~~~~-~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~-~a~g 309 (811)
.+++.+++++++++. .+|+||+. +.++.+++..|.. +.++.+++..... + .+.+. +...+. .+.+
T Consensus 133 ~~~~~v~~~l~~~~~~~~v~i~SF~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~---~~~~~~~~~~~ 203 (265)
T cd08564 133 GLGERVLNLVEKYGMILQVHFSSFLHYDRLDLLKALRPNKLNVPIALLFNEVKS--P----SPLDF---LEQAKYYNATW 203 (265)
T ss_pred hHHHHHHHHHHHcCCCCCEEEEecCchhHHHHHHHhCcCCCCceEEEEecCCCC--c----ccccH---HHHHHhcCCce
Confidence 567889999999986 59999999 9999999988720 1677764432210 0 01111 111121 2444
Q ss_pred ccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcc
Q 003550 310 ILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPS 389 (811)
Q Consensus 310 i~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~ 389 (811)
+.+.+.++ .+++|+.+|++|++|++||.+.- .|+.++|+++++.| ||||+||+|+.+.
T Consensus 204 v~~~~~~~-----------~~~~v~~~~~~Gl~v~~wT~~~~--------~n~~~~~~~l~~~G---vdgiiTD~p~~~~ 261 (265)
T cd08564 204 VNFSYDFW-----------TEEFVKKAHENGLKVMTYFDEPV--------NDNEEDYKVYLELG---VDCICPNDPVLLV 261 (265)
T ss_pred eeechhhh-----------hHHHHHHHHHcCCEEEEecCCCC--------CCCHHHHHHHHHcC---CCEEEcCCHHHHH
Confidence 54433332 25799999999999999993210 13358999999999 9999999999887
Q ss_pred hhh
Q 003550 390 AAV 392 (811)
Q Consensus 390 ~~~ 392 (811)
+++
T Consensus 262 ~~~ 264 (265)
T cd08564 262 NFL 264 (265)
T ss_pred Hhh
Confidence 664
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=329.37 Aligned_cols=215 Identities=16% Similarity=0.232 Sum_probs=175.5
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCccc
Q 003550 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (811)
Q Consensus 94 viaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~ 173 (811)
||||||+++.+||||+.||+.|++.|++ +||||||+||||++||+||.+|+|+|++.+ .
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~Gad--~vE~DV~~T~Dg~~vv~HD~~l~r~t~~~~-------------------~ 59 (220)
T cd08579 1 IIAHRGVSSNGVENTLEALEAAIKAKPD--YVEIDVQETKDGQFVVMHDANLKRLAGVNK-------------------K 59 (220)
T ss_pred CeeccCCCCCCCccHHHHHHHHHHcCCC--EEEEEeeEcCCCCEEEEcCCchhhccCCCC-------------------C
Confidence 6899999999999999999999999999 999999999999999999999999998775 7
Q ss_pred ccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--CceEEeeccchhhhhcCchHHHHHHHHhhhcCc-
Q 003550 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV- 250 (811)
Q Consensus 174 v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~--~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~~- 250 (811)
+.++|++||++++++++ +. .++||||+|+|+++++ ..++||||.+.. ....+.+.++++++++++
T Consensus 60 v~~~t~~el~~l~~~~~-------~~--~~~iptL~evl~~~~~~~~~l~iEiK~~~~---~~~~~~~~v~~~l~~~~~~ 127 (220)
T cd08579 60 VWDLTLEELKKLTIGEN-------GH--GAKIPSLDEYLALAKGLKQKLLIELKPHGH---DSPDLVEKFVKLYKQNLIE 127 (220)
T ss_pred hhhCCHHHHhcCcCccC-------CC--CCcCCCHHHHHHHhhccCCeEEEEECCCCC---CCHHHHHHHHHHHHHcCCC
Confidence 89999999999998764 23 3699999999999975 679999997642 234577888999998875
Q ss_pred --eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCcccccCCCcccCCC
Q 003550 251 --NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLP 328 (811)
Q Consensus 251 --~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~~i~~~~~~~~l~~ 328 (811)
.+|+||+...++.+++..| ..++.++... .. +.+ . ...+..+.+++.. .
T Consensus 128 ~~v~v~Sf~~~~l~~~~~~~p--~~~~~~~~~~-~~---------~~~----~--~~~~~~~~~~~~~-----------~ 178 (220)
T cd08579 128 NQHQVHSLDYRVIEKVKKLDP--KIKTGYILPF-NI---------GNL----P--KTNVDFYSIEYST-----------L 178 (220)
T ss_pred cCeEEEeCCHHHHHHHHHHCC--CCeEEEEEec-cc---------Ccc----c--ccCceEEeeehhh-----------c
Confidence 4899999999999999888 5666663321 10 000 0 1123334333221 2
Q ss_pred ChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCC
Q 003550 329 HTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (811)
Q Consensus 329 ~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P 385 (811)
..++|+.+|++|++|++||+|+. +++++++++| ||||+||+|
T Consensus 179 ~~~~v~~~~~~G~~v~~wtvn~~------------~~~~~~~~~G---vd~i~TD~P 220 (220)
T cd08579 179 NKEFIRQAHQNGKKVYVWTVNDP------------DDMQRYLAMG---VDGIITDYP 220 (220)
T ss_pred CHHHHHHHHHCCCEEEEEcCCCH------------HHHHHHHHcC---CCEEeCCCC
Confidence 36799999999999999999864 8999999999 999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor. |
| >cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=339.19 Aligned_cols=257 Identities=17% Similarity=0.147 Sum_probs=184.4
Q ss_pred EEEEeCCCC--------CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhccccccccc
Q 003550 93 FVVARGGFS--------GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLV 164 (811)
Q Consensus 93 lviaHRG~~--------~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~ 164 (811)
|||||||++ +.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|++.+.+
T Consensus 1 ~viaHRG~~~~~~~~~~~~~pENTl~Af~~A~~~Gad--~vE~DV~lTkDG~lVv~HD~~l~r~~~~~~~~--------- 69 (293)
T cd08572 1 LVIGHRGLGKNYASGSLAGIRENTIASFLAAAKHGAD--MVEFDVQLTKDGVPVIYHDFTISVSEKSKTGS--------- 69 (293)
T ss_pred CceEecCCCCCcCcccccCcCcccHHHHHHHHHcCCC--EEEEEEEEccCCeEEEEcCCcceeeccccccc---------
Confidence 589999997 79999999999999999999 99999999999999999999999999876531
Q ss_pred CCCCCCcccccccCHHhhccccccccccCCCCCC-------------CCCCcccccHHHHHHhhCC-CceEEeeccchhh
Q 003550 165 NGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKF-------------DGNGFQILTVQDMARQIKP-PGLWLNIQHDAFY 230 (811)
Q Consensus 165 ~G~~~~g~~v~d~t~~eL~~l~~~~~~~~~~~~~-------------~~~~~~iptL~evl~~~~~-~~l~leiK~~~~~ 230 (811)
++....+.++.++|++||+++++++++......+ .....+||||+|+|+++++ .+++||||.+...
T Consensus 70 ~~~~g~~~~v~~lT~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~ 149 (293)
T cd08572 70 DEGELIEVPIHDLTLEQLKELGLQHISALKRKALTRKAKGPKPNPWGMDEHDPFPTLQEVLEQVPKDLGFNIEIKYPQLL 149 (293)
T ss_pred ccCcceeeehhhCcHHHHHhccccccccccccccccccccCCccccchhhccCCCCHHHHHHhCCCccceEEEEecCCcc
Confidence 2222234589999999999999887542211110 0113699999999999975 6799999976533
Q ss_pred hhc---------CchHHHHHHHHhhhcCc---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCcc-CCCcccchHHHh
Q 003550 231 AQH---------NLSMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEI-EPTTNQTYGSLL 297 (811)
Q Consensus 231 ~~~---------~~~~~~~l~~~lk~~~~---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~-~~~~~~~y~~l~ 297 (811)
.+. ...+++.+++++++++. .+++||++..|+.+++..| ..++++++...... +.. ......+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~vl~~i~~~~~~~~vv~~SF~~~~l~~l~~~~p--~~~~~~l~~~~~~~~~~~-~~~~~~~~ 226 (293)
T cd08572 150 EDGEGELTPYFERNAFVDTILAVVFEHAGGRRIIFSSFDPDICIMLRLKQN--KYPVLFLTNGGTNEVEHM-DPRRRSLQ 226 (293)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHhhCc--cCCEEEEecCCCCccccc-chhhhhHH
Confidence 211 12577889999998876 4999999999999999988 67888754321110 000 00001111
Q ss_pred hhHHHHHh-hcccccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCc
Q 003550 298 KNLTFIKT-FASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFS 376 (811)
Q Consensus 298 ~~L~~i~~-~a~gi~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~ 376 (811)
..+.+.+. .+.++.+...+ +...+++|+++|++|+.|++||++|+ ..++|+++++.|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~~Gl~v~~wTv~~n----------~~~~~~~l~~~G--- 284 (293)
T cd08572 227 AAVNFALAEGLLGVVLHAED---------LLKNPSLISLVKALGLVLFTYGDDNN----------DPENVKKQKELG--- 284 (293)
T ss_pred HHHHHHHHCCCeEEEechHH---------hhcCcHHHHHHHHcCcEEEEECCCCC----------CHHHHHHHHHcC---
Confidence 11111111 12333333222 22236799999999999999999432 248999999999
Q ss_pred cCeEeccCC
Q 003550 377 VDGVLSDFP 385 (811)
Q Consensus 377 VDgIiTD~P 385 (811)
||||+||+|
T Consensus 285 VdgIiTD~~ 293 (293)
T cd08572 285 VDGVIYDRV 293 (293)
T ss_pred CCEEEecCC
Confidence 999999997
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-38 Score=331.95 Aligned_cols=231 Identities=14% Similarity=0.127 Sum_probs=175.6
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCccc
Q 003550 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (811)
Q Consensus 94 viaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~ 173 (811)
||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+|++.+ .
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~Gad--~iE~DV~lTkDg~~Vv~HD~~l~R~t~~~g-------------------~ 59 (258)
T cd08573 1 IIGHRGAGHDAPENTLAAFRQAKKNGAD--GVEFDLEFTKDGVPVLMHDDTVDRTTDGTG-------------------L 59 (258)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCC--EEEEEeeECCCCcEEEECCCCcceecCCCc-------------------e
Confidence 6899999999999999999999999999 999999999999999999999999999775 7
Q ss_pred ccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--CceEEeeccchhhhhcCchHHHHHHHHhhhcC-c
Q 003550 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVV-V 250 (811)
Q Consensus 174 v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~--~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~-~ 250 (811)
+.++||+||++++++.++. ....|.+ ++||||+|+|+++++ ..++||||.+. ..+++.+++++++++ .
T Consensus 60 v~~~t~~el~~l~~~~~~~-~~~~~~~--~~iptL~evl~~~~~~~~~l~iEiK~~~------~~~~~~v~~~l~~~~~~ 130 (258)
T cd08573 60 VAELTWEELRKLNAAAKHR-LSSRFPG--EKIPTLEEAVKECLENNLRMIFDVKSNS------SKLVDALKNLFKKYPGL 130 (258)
T ss_pred EecCcHHHHhhCCCCCCCC-CccccCC--CCCCCHHHHHHHHHhcCCEEEEEeCCCc------HHHHHHHHHHHHHCCCc
Confidence 8999999999999886542 2344555 799999999999854 57999999754 156788899999888 4
Q ss_pred ---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCC----cccc---hH----HHhhhH-----HHHH---hhcc
Q 003550 251 ---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPT----TNQT---YG----SLLKNL-----TFIK---TFAS 308 (811)
Q Consensus 251 ---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~----~~~~---y~----~l~~~L-----~~i~---~~a~ 308 (811)
.+++||+...++++++..| ..++.+++ ........ .... +. .+...+ ..+. ..++
T Consensus 131 ~~~v~v~SF~~~~l~~~~~~~p--~~~~g~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (258)
T cd08573 131 YDKAIVCSFNPIVIYKVRKADP--KILTGLTW-RPWFLSYTDDEGGPRRKSGWKHFLYSMLDVILEWSLHSWLPYFLGVS 207 (258)
T ss_pred cCCEEEEECCHHHHHHHHHhCC--CceEEEec-CcchhcccccccCcccchHHHHHHHHHHHHHHHHHHHhhhhhhcCee
Confidence 4999999999999999998 56666533 11100000 0000 11 111100 0000 0122
Q ss_pred cccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHH-cCCCccCeEeccC
Q 003550 309 GILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFID-NGDFSVDGVLSDF 384 (811)
Q Consensus 309 gi~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~-~G~~~VDgIiTD~ 384 (811)
++.+.+. ....++|+.+|++|++|++||||+. ++++++++ +| || ||||+
T Consensus 208 ~v~~~~~-----------~~~~~~v~~~~~~G~~v~vWTVn~~------------~~~~~l~~~~G---Vd-iiTD~ 257 (258)
T cd08573 208 ALLIHKD-----------DISSAYVRYWRARGIRVIAWTVNTP------------TEKQYFAKTLN---VP-YITDS 257 (258)
T ss_pred EEEechH-----------hcCHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHHHhC---CC-eecCC
Confidence 2222222 2246799999999999999999865 89999999 99 99 99997
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G |
| >cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=335.92 Aligned_cols=256 Identities=15% Similarity=0.122 Sum_probs=179.6
Q ss_pred EEEEeCCCC-------CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccC
Q 003550 93 FVVARGGFS-------GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVN 165 (811)
Q Consensus 93 lviaHRG~~-------~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~ 165 (811)
+.|||||++ +.+||||+.||+.|++.|+| +||||||+||||++||+||.+|+|+|++.+..+.
T Consensus 1 ~~iaHRG~~~~~~~~~~~~PENTl~af~~A~~~Gad--~iE~DV~lTkDg~~VV~HD~~l~r~~~~~~~~~~-------- 70 (290)
T cd08607 1 LDVGHRGAGNSYTAASAVVRENTIASFLQAAEHGAD--MVEFDVQLTKDLVPVVYHDFTLRVSLKSKGDSDR-------- 70 (290)
T ss_pred CceecCCCCcCcccccCCCCccHHHHHHHHHHcCCC--EEEEEEEEccCCeEEEEcCCeeEeeccCccccCc--------
Confidence 479999984 89999999999999999999 9999999999999999999999999987642211
Q ss_pred CCCCCcccccccCHHhhccccccccccCCCCCCCC--------CCcccccHHHHHHhhCC-CceEEeeccchhhhhc---
Q 003550 166 GVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDG--------NGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQH--- 233 (811)
Q Consensus 166 G~~~~g~~v~d~t~~eL~~l~~~~~~~~~~~~~~~--------~~~~iptL~evl~~~~~-~~l~leiK~~~~~~~~--- 233 (811)
.+..++.+.|+|++||++++++.+..+....|.+ ..++||||+|+|++++. .+++||||.+......
T Consensus 71 -~~~~~~~v~~lt~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~~~lnIEiK~~~~~~~~~~~ 149 (290)
T cd08607 71 -DDLLEVPVKDLTYEQLKLLKLFHISALKVKEYKSVEEDEDPPEHQPFPTLSDVLESVPEDVGFNIEIKWPQQQKDGSWE 149 (290)
T ss_pred -cceEEEecccCCHHHHhhcCcccccccccccccccccccccccccCCCCHHHHHHhCCCccceEEEEecCccccccccc
Confidence 1122347999999999999987533222222321 13689999999999865 6799999975421110
Q ss_pred --------CchHHHHHHHHhhhcCc---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCc-cCCCcccchHHHhhhHH
Q 003550 234 --------NLSMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSE-IEPTTNQTYGSLLKNLT 301 (811)
Q Consensus 234 --------~~~~~~~l~~~lk~~~~---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~-~~~~~~~~y~~l~~~L~ 301 (811)
...+++.+++.+++++. .+|+||++..|+.++.+.| ..++.++...... ..+........+.....
T Consensus 150 ~~~~~~~~~~~~~~~v~~~i~~~~~~~~v~isSF~~~~l~~~~~~~p--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (290)
T cd08607 150 SELFTYFDRNLFVDIILKIVLEHAGKRRIIFSSFDADICTMLRFKQN--KYPVLFLTQGKTQRYPEFMDLRTRTFEIAVN 227 (290)
T ss_pred cccccccchhHHHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHhCc--CCCEEEEecCCCCccccccchHHHhHHHHHH
Confidence 01356778888887754 5999999999999999988 6777764422110 00000000000111111
Q ss_pred HHHh-hcccccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEec--CCCCCcccCCCCChHHHHHHHHHcCCCccC
Q 003550 302 FIKT-FASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNF--ANDIPISFNYSYDPLTEYLSFIDNGDFSVD 378 (811)
Q Consensus 302 ~i~~-~a~gi~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv--~n~~~~~~~~~~D~~~e~~~~i~~G~~~VD 378 (811)
..+. .+.++.++.. ++...+++|+.+|++|++|++||+ |+ .++|++++++| ||
T Consensus 228 ~~~~~~~~~~~~~~~---------~~~~~~~~v~~~~~~Gl~v~~wTv~~n~------------~~~~~~l~~~G---Vd 283 (290)
T cd08607 228 FAQAEELLGVNLHSE---------DLLKDPSQIELAKSLGLVVFCWGDDLND------------PENRKKLKELG---VD 283 (290)
T ss_pred HHHHcCCceeEechh---------hhhcChHHHHHHHHcCCEEEEECCCCCC------------HHHHHHHHHcC---CC
Confidence 1111 1223333222 222346799999999999999999 43 38999999999 99
Q ss_pred eEeccCC
Q 003550 379 GVLSDFP 385 (811)
Q Consensus 379 gIiTD~P 385 (811)
|||||++
T Consensus 284 gIiTD~~ 290 (290)
T cd08607 284 GLIYDRI 290 (290)
T ss_pred EEEecCC
Confidence 9999985
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism. |
| >cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=329.57 Aligned_cols=240 Identities=20% Similarity=0.217 Sum_probs=180.3
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCccc
Q 003550 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (811)
Q Consensus 94 viaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~ 173 (811)
||||||+++.+||||+.||+.|++.|++ +||||||+||||++||+||.+|+|+|++.+ .
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~g~d--~vE~Dv~~TkDg~~Vv~HD~~l~r~t~~~~-------------------~ 59 (249)
T cd08561 1 VIAHRGGAGLAPENTLLAFEDAVELGAD--VLETDVHATKDGVLVVIHDETLDRTTDGTG-------------------P 59 (249)
T ss_pred CcccCCCCCCCCccHHHHHHHHHHhCCC--EEEEEeeECCCCCEEEECCCccccccCCCC-------------------c
Confidence 6899999999999999999999999999 999999999999999999999999998875 7
Q ss_pred ccccCHHhhccccccccccCCCC---CCCCCCcccccHHHHHHhhCCCceEEeeccchhhhhcCchHHHHHHHHhhhcCc
Q 003550 174 SIDYTLNDLSNIILNQGVYSRTD---KFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV 250 (811)
Q Consensus 174 v~d~t~~eL~~l~~~~~~~~~~~---~~~~~~~~iptL~evl~~~~~~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~~ 250 (811)
+.++|++||++++++.++..... .+....++||||+|+|+++++..++||+|.+. ..+++.+++++++++.
T Consensus 60 i~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~ieiK~~~------~~~~~~~~~~l~~~~~ 133 (249)
T cd08561 60 VADLTLAELRRLDAGYHFTDDGGRTYPYRGQGIRIPTLEELFEAFPDVRLNIEIKDDG------PAAAAALADLIERYGA 133 (249)
T ss_pred hhhCCHHHHhhcCcCccccCccccccccCCCCccCCCHHHHHHhCcCCcEEEEECCCc------hhHHHHHHHHHHHcCC
Confidence 89999999999998875421111 11222379999999999998888999999753 2477889999998875
Q ss_pred ---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhh-hH-HHHHhhcccccCCCcccccCCCccc
Q 003550 251 ---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLK-NL-TFIKTFASGILVPKDYIWPVDESLY 325 (811)
Q Consensus 251 ---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~-~L-~~i~~~a~gi~~~~~~i~~~~~~~~ 325 (811)
.+++||+.+.++.+++..| ..++.+...+.. . +..... .+ ........++.++..+. ++
T Consensus 134 ~~~~~~~Sf~~~~l~~~~~~~p--~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 197 (249)
T cd08561 134 QDRVLVASFSDRVLRRFRRLCP--RVATSAGEGEVA-------A-FVLASRLGLGSLYSPPYDALQIPVRYG------GV 197 (249)
T ss_pred CCcEEEEECCHHHHHHHHHHCC--CcceeccHHHHH-------H-HHHHhhcccccccCCCCcEEEcCcccC------Ce
Confidence 4999999999999999988 455544110000 0 000000 00 00000112222221111 12
Q ss_pred CCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcchh
Q 003550 326 LLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAA 391 (811)
Q Consensus 326 l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~~~ 391 (811)
....+.+|+.+|++|++|++||||+. ++|.++++.| ||||+||+|+++.++
T Consensus 198 ~~~~~~~v~~~~~~G~~v~vWTVN~~------------~~~~~l~~~g---VdgIiTD~p~~~~~~ 248 (249)
T cd08561 198 PLVTPRFVRAAHAAGLEVHVWTVNDP------------AEMRRLLDLG---VDGIITDRPDLLLEV 248 (249)
T ss_pred ecCCHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHhcC---CCEEEcCCHHHHHhh
Confidence 23347899999999999999999865 8999999999 999999999977654
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=329.73 Aligned_cols=242 Identities=19% Similarity=0.181 Sum_probs=178.9
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCC--CCC
Q 003550 93 FVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGV--PTP 170 (811)
Q Consensus 93 lviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~--~~~ 170 (811)
.||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+|.... +|. +..
T Consensus 2 ~iiaHRG~~~~~pENT~~Af~~A~~~Gad--~vE~DV~~TkDg~~Vv~HD~~l~r~~~r~~-----------~~~~~~~~ 68 (263)
T cd08567 2 DLQGHRGARGLLPENTLPAFAKALDLGVD--TLELDLVLTKDGVIVVSHDPKLNPDITRDP-----------DGAWLPYE 68 (263)
T ss_pred ceEeccCCCCCCCcchHHHHHHHHHcCCC--EEEEEEEEcCCCCEEEeCCCccCcceeecC-----------CCCccccc
Confidence 59999999999999999999999999999 999999999999999999999998652110 111 111
Q ss_pred cccccccCHHhhccccccccccCC--CCCCCC----CCcccccHHHHHHhhCC-----CceEEeeccchhhh---hcCch
Q 003550 171 GWFSIDYTLNDLSNIILNQGVYSR--TDKFDG----NGFQILTVQDMARQIKP-----PGLWLNIQHDAFYA---QHNLS 236 (811)
Q Consensus 171 g~~v~d~t~~eL~~l~~~~~~~~~--~~~~~~----~~~~iptL~evl~~~~~-----~~l~leiK~~~~~~---~~~~~ 236 (811)
+..|.++||+||++++++.++... ...|.+ ..++||||+|+|+++++ ..++||+|.+.... .....
T Consensus 69 ~~~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~ 148 (263)
T cd08567 69 GPALYELTLAEIKQLDVGEKRPGSDYAKLFPEQIPVPGTRIPTLEEVFALVEKYGNQKVRFNIETKSDPDRDILHPPPEE 148 (263)
T ss_pred CcchhcCCHHHHHhcCCCccccCcCcccCCCccccCccccCCCHHHHHHHHHHhccCCceEEEEEcCCCCccccCccHHH
Confidence 237999999999999988754211 122211 12699999999999975 57999999654221 11245
Q ss_pred HHHHHHHHhhhcCc---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHh-hcccccC
Q 003550 237 MRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILV 312 (811)
Q Consensus 237 ~~~~l~~~lk~~~~---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~-~a~gi~~ 312 (811)
+++.+++++++++. .+++||+.+.++.++++.| +.++.+++..... ..+.. .++. -+..+.+
T Consensus 149 ~~~~v~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p--~~~~~~l~~~~~~------~~~~~------~~~~~~~~~~~~ 214 (263)
T cd08567 149 FVDAVLAVIRKAGLEDRVVLQSFDWRTLQEVRRLAP--DIPTVALTEETTL------GNLPR------AAKKLGADIWSP 214 (263)
T ss_pred HHHHHHHHHHHcCCCCceEEEeCCHHHHHHHHHHCC--CccEEEEecCCcc------cCHHH------HHHHhCCcEEec
Confidence 77899999998876 4999999999999999988 6777764432110 01111 1111 1222222
Q ss_pred CCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCC
Q 003550 313 PKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLT 387 (811)
Q Consensus 313 ~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~ 387 (811)
. +....+++++.+|++|+.|++||+|+. ++|.++++.| ||||+||+|+.
T Consensus 215 ~-----------~~~~~~~~i~~~~~~G~~v~vwtvn~~------------~~~~~~~~~G---vdgi~TD~P~~ 263 (263)
T cd08567 215 Y-----------FTLVTKELVDEAHALGLKVVPWTVNDP------------EDMARLIDLG---VDGIITDYPDL 263 (263)
T ss_pred c-----------hhhcCHHHHHHHHHCCCEEEEecCCCH------------HHHHHHHHcC---CCEEEcCCCCC
Confidence 1 112346799999999999999999753 7899999999 99999999974
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=325.41 Aligned_cols=224 Identities=17% Similarity=0.082 Sum_probs=172.3
Q ss_pred ceeecCCCCCCC---CCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCc
Q 003550 408 LLVISKNGASGD---YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGS 484 (811)
Q Consensus 408 plIIAHRGasg~---~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~ 484 (811)
+.+|||||+++. +||||++||++|++.|+ +||+|||+||||++||+||.+|+|+|+ +.
T Consensus 4 ~~~iaHRG~~~~~~~~pENTl~af~~A~~~G~-~iE~DV~lT~Dg~lVv~HD~~l~r~t~------------------~~ 64 (237)
T cd08585 4 DRPIAHRGLHDRDAGIPENSLSAFRAAAEAGY-GIELDVQLTADGEVVVFHDDNLKRLTG------------------VE 64 (237)
T ss_pred CCceECCCCCCCCCCCCccHHHHHHHHHHcCC-cEEEEeeECCCCCEEEeccchHhhhcC------------------CC
Confidence 458999999874 79999999999999999 799999999999999999999999998 55
Q ss_pred cccccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHH
Q 003550 485 GIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNS 564 (811)
Q Consensus 485 G~~v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~ 564 (811)
| .|.++||+||++|+.+.. .++||||+|+|+++++. .+++||+|.+... ...+++.
T Consensus 65 ~-~v~~~t~~eL~~l~~~~~----------------~~~iPtL~evl~~~~~~---~~l~iEiK~~~~~----~~~l~~~ 120 (237)
T cd08585 65 G-RVEELTAAELRALRLLGT----------------DEHIPTLDEVLELVAGR---VPLLIELKSCGGG----DGGLERR 120 (237)
T ss_pred C-ccccCCHHHHhcCCCCCC----------------CCCCCCHHHHHHHhccC---ceEEEEEccCCcc----chHHHHH
Confidence 5 799999999999987621 26899999999999864 5899999975431 2347888
Q ss_pred HHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHH--HHHHh--hhhhccccceeecC
Q 003550 565 VMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIE--DIKKF--ADSVVLSKESVYPL 639 (811)
Q Consensus 565 v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~--~i~~~--a~~v~~~~~~i~p~ 639 (811)
+++++++++ .+|+|+|||+.+|+++++. |++++++++.....+....... ..+.. ....++ ..+.+.
T Consensus 121 v~~~l~~~~------~~v~i~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 192 (237)
T cd08585 121 VLAALKDYK------GPAAIMSFDPRVVRWFRKLAPGIPRGQLSEGSNDEADPAFWNEALLSALFSNLLTRP--DFIAYH 192 (237)
T ss_pred HHHHHHhcC------CCEEEEECCHHHHHHHHHHCCCCCEEEEecCCcccccccchhHHHHHhhhhhhccCC--CEEEeC
Confidence 999998753 4899999999999999999 9999999986432111110000 00000 001122 222221
Q ss_pred CccccCCCHHHHHHHHHc-CCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEe
Q 003550 640 NSAFITSATDIVQRLQSF-KLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVIT 699 (811)
Q Consensus 640 ~~~~l~~~~~~V~~~~~~-Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiT 699 (811)
.. ..+.++|+++|++ |+.|++||||++. ++.+++ ++|+++||-
T Consensus 193 ~~---~~~~~~v~~~~~~~G~~v~vWTVnd~~-------------~~~~l~-~~G~~~i~~ 236 (237)
T cd08585 193 LD---DLPNPFVTLARALLGMPVIVWTVRTEE-------------DIARLK-QYADNIIFE 236 (237)
T ss_pred hh---hCcCHHHHHHHHhcCCcEEEEeCCCHH-------------HHHHHH-HhCCeeEeC
Confidence 11 2346899999999 9999999999884 688887 899999973
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=324.71 Aligned_cols=218 Identities=18% Similarity=0.198 Sum_probs=170.0
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchh-hhhcccccccccCCCCCCcc
Q 003550 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIA-QIFKTQQKNYLVNGVPTPGW 172 (811)
Q Consensus 94 viaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~-~~~~~~~~~y~~~G~~~~g~ 172 (811)
||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+++|+|++. +
T Consensus 1 iiAHRG~~~~~pENT~~af~~a~~~g~d--~vE~Dv~lTkDg~~vv~HD~~l~R~t~~~~~------------------- 59 (234)
T cd08570 1 VIGHRGYKAKYPENTLLAFEKAVEAGAD--AIETDVHLTKDGVVVISHDPNLKRCFGKDGL------------------- 59 (234)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHhCCC--EEEEEeeEccCCcEEEeCCCccceeeCCCCC-------------------
Confidence 6899999999999999999999999999 99999999999999999999999999876 3
Q ss_pred cccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC-----CCceEEeeccchhhhhcCchHHHHHHHHhhh
Q 003550 173 FSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK-----PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRS 247 (811)
Q Consensus 173 ~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~-----~~~l~leiK~~~~~~~~~~~~~~~l~~~lk~ 247 (811)
.+.++|++||+++++++ .+ .++||||+|++++++ +..++||+|.... ...++..+.+++++
T Consensus 60 ~v~~~t~~eL~~l~~~~---------~~-~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~----~~~~~~~v~~~i~~ 125 (234)
T cd08570 60 IIDDSTWDELSHLRTIE---------EP-HQPMPTLKDVLEWLVEHELPDVKLMLDIKRDND----PEILFKLIAEMLAV 125 (234)
T ss_pred EeccCCHHHHhhccccc---------CC-CccCCcHHHHHHHHHhcCCCCeEEEEEECCCCC----HHHHHHHHHHHHHh
Confidence 79999999999998763 12 368999999999985 3568999996431 13466777788887
Q ss_pred cC-------ceEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhh---cccccCCCccc
Q 003550 248 VV-------VNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTF---ASGILVPKDYI 317 (811)
Q Consensus 248 ~~-------~~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~---a~gi~~~~~~i 317 (811)
++ -.+|+||+...++.+++..| +.+++++..... .. ..+..+ +.++.+....+
T Consensus 126 ~~~~~~~~~~v~i~Sf~~~~l~~l~~~~p--~~~~~~l~~~~~-----------~~----~~~~~~~~~~~~~~~~~~~~ 188 (234)
T cd08570 126 KPDLDFWRERIILGLWHLDFLKYGKEVLP--GFPVFHIGFSLD-----------YA----RHFLNYSEKLVGISMHFVSL 188 (234)
T ss_pred cCCcccccCCEEEEeCCHHHHHHHHHhCC--CCCeEEEEcCHH-----------HH----HHHhccccccceEEeeeehh
Confidence 64 24899999999999999988 566665322110 00 001111 22333222111
Q ss_pred ccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCC
Q 003550 318 WPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (811)
Q Consensus 318 ~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P 385 (811)
+. . ...++|+.+|++|++|++||||++ ++|++++++| ||||+||+|
T Consensus 189 ~~-----~--~~~~~v~~~~~~gl~v~~wTvn~~------------~~~~~l~~~g---vdgiiTD~P 234 (234)
T cd08570 189 WG-----P--FGQAFLPELKKNGKKVFVWTVNTE------------EDMRYAIRLG---VDGVITDDP 234 (234)
T ss_pred hc-----c--cCHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHHCC---CCEEEeCCC
Confidence 10 0 247899999999999999999865 8999999999 999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip |
| >COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=327.35 Aligned_cols=247 Identities=26% Similarity=0.337 Sum_probs=198.2
Q ss_pred cceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCccc
Q 003550 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGI 486 (811)
Q Consensus 407 ~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~ 486 (811)
.++||||||+++.+||||++||++|++.|+|+||+|||+||||++|++||.+++|+|+ +.|
T Consensus 5 ~~~iiaHRG~s~~~PENTl~Af~~A~~~gad~iE~Dv~lTkDg~lVv~HD~~~drt~~------------------~~~- 65 (257)
T COG0584 5 MPLIIAHRGASGYAPENTLAAFELAAEQGADYIELDVQLTKDGVLVVIHDETLDRTTN------------------GLG- 65 (257)
T ss_pred ceEEEeccCcCCCCCcchHHHHHHHHHcCCCEEEeeccCccCCcEEEecccchhhhcc------------------Ccc-
Confidence 5799999999999999999999999999999999999999999999999999999998 566
Q ss_pred cccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHH
Q 003550 487 FSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVM 566 (811)
Q Consensus 487 ~v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~ 566 (811)
.+.++||+|+++++.+.+. .+.+ .+.+|||+|+++.. +. ..+++||+|.+.......+ ++..++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~---------~~~~--~~~ip~l~~~l~~~-~~--~~~l~ieiK~~~~~~~~~~--~~~~~~ 129 (257)
T COG0584 66 TVRDLTLAELKRLDAGSFR---------IPTF--GEEIPTLEELLEAT-GR--KIGLYIEIKSPGFHPQEGK--ILAALL 129 (257)
T ss_pred ccccCChhhhcCcccCccc---------CCCC--CCccCCHHHHHHHh-cc--cCCeEEEecCCCcccchhh--hHHHHH
Confidence 6789999999999955432 2334 37999999999999 42 2699999998775532111 456666
Q ss_pred HHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccc---cchhchHhHHHHHHhhhhhccccceeecCCcc
Q 003550 567 EALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKEN---IRDALNQTIEDIKKFADSVVLSKESVYPLNSA 642 (811)
Q Consensus 567 ~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~---~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~ 642 (811)
+.+.+..... ..+++++|||+...+..+++. |.++++++++.. .....+..+..+..++..+++....+.+.
T Consensus 130 ~~~~~~~~~~-~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--- 205 (257)
T COG0584 130 ALLKRYGGTA-ADDRVILSSFDHAALKRIKRLAPDLPLGLLLDATDQYDWMELPRALKEVALYADGVGPDWAMLAEL--- 205 (257)
T ss_pred HHHHHhcccC-CCCceEEEecCHHHHHHHHHhCcCCceEEEEcccchhhhhhccchhhHHHhhhcccCcccceeccc---
Confidence 7776654411 126999999999999999999 999999999875 12234455667777887777754433221
Q ss_pred ccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHHHHHHH
Q 003550 643 FITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRR 710 (811)
Q Consensus 643 ~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~~~~~~ 710 (811)
.+.++..+|..|+.|++||++++. .+..+. ++|||||+||+|+.+.+.+.
T Consensus 206 ----~~~~v~~~~~~gl~v~~~tv~~~~-------------~~~~~~-~~gvd~i~td~p~~~~~~~~ 255 (257)
T COG0584 206 ----LTELVDDAHAAGLKVHVWTVNEED-------------DIRLLL-EAGVDGLITDFPDLAVAFLN 255 (257)
T ss_pred ----ccHHHHHHHhCCCeEEEEecCcHH-------------HHHHHH-HcCCCEEEcCCHHHHHHhhc
Confidence 357999999999999999999884 245554 99999999999999988764
|
|
| >cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=322.62 Aligned_cols=231 Identities=13% Similarity=0.140 Sum_probs=170.5
Q ss_pred eecCCCC--CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccc
Q 003550 410 VISKNGA--SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (811)
Q Consensus 410 IIAHRGa--sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~ 487 (811)
+|||||+ ++.+||||++||++|++.|+|+||||||+||||++||+||.+++|+.+... ..++ .
T Consensus 1 ~~aHRG~G~~~~~pENTl~Af~~A~~~G~d~iE~DV~lTkDg~lVv~HD~~~~r~~~~g~--------------~~~~-~ 65 (237)
T cd08583 1 LIAHAMGGIDGKTYTNSLDAFEHNYKKGYRVFEVDLSLTSDGVLVARHSWDESLLKQLGL--------------PTSK-N 65 (237)
T ss_pred CeeecCCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeEccCCCEEEEECCcCchhhhcCC--------------cccc-c
Confidence 4899996 789999999999999999999999999999999999999999987532000 0133 6
Q ss_pred ccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHH
Q 003550 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (811)
Q Consensus 488 v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~ 567 (811)
+.++|++|+++++.. . .+++|||+|+|+++++.+ .+.++||||.... .. -..++..+++
T Consensus 66 i~~~t~~el~~~~~~----------------~-~~~iptL~evl~~~~~~~-~~~l~iEiK~~~~-~~--~~~~~~~l~~ 124 (237)
T cd08583 66 TKPLSYEEFKSKKIY----------------G-KYTPMDFKDVIDLLKKYP-DVYIVTDTKQDDD-ND--IKKLYEYIVK 124 (237)
T ss_pred ccCCCHHHHhhcccc----------------C-CCCCCCHHHHHHHHHhCC-CeEEEEEecCCCc-cc--HHHHHHHHHH
Confidence 889999999886542 1 268999999999998642 2579999996532 10 0125668888
Q ss_pred HHHhc--CCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCcccc
Q 003550 568 ALGNA--GYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFI 644 (811)
Q Consensus 568 ~L~~~--g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l 644 (811)
.++++ ++. +||+|+|||+.+|..+++. |.....++..... ......+..++..++. ..+.+...
T Consensus 125 ~~~~~~~~~~----~~v~~~SF~~~~L~~~~~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~--- 191 (237)
T cd08583 125 EAKEVDPDLL----DRVIPQIYNEEMYEAIMSIYPFKSVIYTLYRQD----SIRLDEIIAFCYENGI--KAVTISKN--- 191 (237)
T ss_pred HHHhhccccc----ceeEEEecCHHHHHHHHHhCCCcceeeEecccc----ccchHHHHHHHHHcCC--cEEEechh---
Confidence 88886 355 6999999999999999998 8766655542210 0011222222222222 12222211
Q ss_pred CCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChH
Q 003550 645 TSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPM 703 (811)
Q Consensus 645 ~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~ 703 (811)
...+.+|+++|++|+.|++||+|++. ++..++ ++||||||||+|.
T Consensus 192 ~~~~~~v~~~~~~Gl~v~vwTVn~~~-------------~~~~l~-~~GVdgiiTD~~~ 236 (237)
T cd08583 192 YVNDKLIEKLNKAGIYVYVYTINDLK-------------DAQEYK-KLGVYGIYTDFLT 236 (237)
T ss_pred hcCHHHHHHHHHCCCEEEEEeCCCHH-------------HHHHHH-HcCCCEEEeCCCC
Confidence 23578999999999999999999884 578887 9999999999984
|
This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues. |
| >cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=331.93 Aligned_cols=252 Identities=15% Similarity=0.182 Sum_probs=180.0
Q ss_pred CEEEEeCCCCCCCC--------chHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccc
Q 003550 92 PFVVARGGFSGIFP--------DSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYL 163 (811)
Q Consensus 92 plviaHRG~~~~~P--------ENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~ 163 (811)
++||||||+++.+| |||++||+.|++.|+| +||+|||+||||++||+||.+++|+ ++.+
T Consensus 2 ~~iiaHRG~~~~~p~~~~~~~pENTl~af~~A~~~g~d--~vE~DV~lTkDg~~VV~HD~~l~rt-~~~~---------- 68 (286)
T cd08606 2 VQVIGHRGLGKNTAERKSLQLGENTVESFILAASLGAS--YVEVDVQLTKDLVPVIYHDFLVSET-GTDV---------- 68 (286)
T ss_pred ceEEEeCCCCCCcccccccCcCcchHHHHHHHHHcCCC--EEEEEEEEccCCEEEEeCCCeeccC-CCCC----------
Confidence 57999999999999 9999999999999999 9999999999999999999999984 4433
Q ss_pred cCCCCCCcccccccCHHhhcccccc---ccccCCCCCCC----CC--CcccccHHHHHHhhCC-CceEEeeccchhhhhc
Q 003550 164 VNGVPTPGWFSIDYTLNDLSNIILN---QGVYSRTDKFD----GN--GFQILTVQDMARQIKP-PGLWLNIQHDAFYAQH 233 (811)
Q Consensus 164 ~~G~~~~g~~v~d~t~~eL~~l~~~---~~~~~~~~~~~----~~--~~~iptL~evl~~~~~-~~l~leiK~~~~~~~~ 233 (811)
.+.|+|++||++++.. .++ .+..|. |. ..+||||+|+|+.+++ .+++||||.+..+...
T Consensus 69 ---------~v~~lt~~eL~~ld~~~~~~~~--~~~~~~~~~~g~~~~~~iptL~evl~~~~~~~~l~IEiK~~~~~~~~ 137 (286)
T cd08606 69 ---------PIHDLTLEQFLHLSRMKYTVDF--KKKGFKGNSRGHSIQAPFTTLEELLKKLPKSVGFNIELKYPMLHEAE 137 (286)
T ss_pred ---------ccccCCHHHHHhhhcccccccc--cccCCCCcccccccccCCCcHHHHHHhCCCccceEEEEecCCcchhh
Confidence 6899999999998743 222 122333 21 1469999999999965 6799999975422111
Q ss_pred C----------chHHHHHHHHhhhcCc---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhH
Q 003550 234 N----------LSMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNL 300 (811)
Q Consensus 234 ~----------~~~~~~l~~~lk~~~~---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L 300 (811)
. ..+++.+++++++++. .+++||+++.|+.++.+.| ..++.+++..... +........+....
T Consensus 138 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~vi~sSF~~~~l~~~~~~~p--~~~~~~l~~~~~~--~~~~~~~~~~~~~~ 213 (286)
T cd08606 138 EEEVAPVAIELNAFVDTVLEKVFDYGAGRNIIFSSFTPDICILLSLKQP--GYPVLFLTEAGKA--PDMDVRAASLQEAI 213 (286)
T ss_pred hcccccchhHHHHHHHHHHHHHHhcCCCCceEEEcCCHHHHHHHHhhCc--CCCEEEEeCCCCC--ccCCchhhcHHHHH
Confidence 0 1456788999998875 4999999999999999988 6777764321110 00000000010011
Q ss_pred HHHHhh-cccccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCe
Q 003550 301 TFIKTF-ASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDG 379 (811)
Q Consensus 301 ~~i~~~-a~gi~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDg 379 (811)
...+.. +.|+.++.. ++...+++|+.+|++|++|++|||.++ ..++|++++++| |||
T Consensus 214 ~~~~~~~~~~~~~~~~---------~~~~~~~~v~~~~~~Gl~v~~WTv~~n----------~~~~~~~l~~~G---Vdg 271 (286)
T cd08606 214 RFAKQWNLLGLVSAAE---------PLVMCPRLIQVVKRSGLVCVSYGVLNN----------DPENAKTQVKAG---VDA 271 (286)
T ss_pred HHHHHCCCeEEEechH---------HhhhChHHHHHHHHCCcEEEEECCccC----------CHHHHHHHHHcC---CCE
Confidence 111111 223322221 122246799999999999999999321 138999999999 999
Q ss_pred EeccCCCCcchhhh
Q 003550 380 VLSDFPLTPSAAVD 393 (811)
Q Consensus 380 IiTD~P~~a~~~~~ 393 (811)
||||+|+.+.++++
T Consensus 272 IiTD~p~~~~~~~~ 285 (286)
T cd08606 272 VIVDSVLAIRRGLT 285 (286)
T ss_pred EEECCHHHHHHHhc
Confidence 99999998877653
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp |
| >cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=322.14 Aligned_cols=231 Identities=19% Similarity=0.134 Sum_probs=173.5
Q ss_pred EEEEeCCCCCC-CCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCc
Q 003550 93 FVVARGGFSGI-FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (811)
Q Consensus 93 lviaHRG~~~~-~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g 171 (811)
+||||||+++. +||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|++.+
T Consensus 1 ~iiaHRG~~~~~~pENTl~af~~A~~~g~d--~iE~DV~~T~Dg~~vv~HD~~l~r~t~~~~------------------ 60 (240)
T cd08566 1 LVVAHRGGWGAGAPENSLAAIEAAIDLGAD--IVEIDVRRTKDGVLVLMHDDTLDRTTNGKG------------------ 60 (240)
T ss_pred CeEecCCCCCCCCCccHHHHHHHHHHcCCC--EEEEEeeEcCCCCEEEECCCCCccccCCCC------------------
Confidence 48999999999 999999999999999999 999999999999999999999999998765
Q ss_pred ccccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC-CceEEeeccchhhhhcCchHHHHHHHHhhhcCc
Q 003550 172 WFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV 250 (811)
Q Consensus 172 ~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~-~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~~ 250 (811)
.+.++|++||++++++.++ ..|.+ ++||||+|+|+++++ ..++||+|.. ....+++++++++.
T Consensus 61 -~v~~~t~~el~~l~~~~~~----~~~~~--~~iptL~evl~~~~~~~~l~iEiK~~---------~~~~~~~~~~~~~~ 124 (240)
T cd08566 61 -KVSDLTLAEIRKLRLKDGD----GEVTD--EKVPTLEEALAWAKGKILLNLDLKDA---------DLDEVIALVKKHGA 124 (240)
T ss_pred -chhhCcHHHHHhCCcCCCc----CCCCC--CCCCCHHHHHHhhhcCcEEEEEECch---------HHHHHHHHHHHcCC
Confidence 7999999999999998754 34555 799999999999876 5799999964 24668888888876
Q ss_pred ---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCcccccCCCcccCC
Q 003550 251 ---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLL 327 (811)
Q Consensus 251 ---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~~i~~~~~~~~l~ 327 (811)
.+++||+.+.++.+++..| ..++.+++-.... . ..........+.+ ..+.+. +..
T Consensus 125 ~~~v~~~sf~~~~l~~~~~~~p--~~~~~~l~~~~~~-----~---------~~~~~~~~~~~~~--~~~~~~----~~~ 182 (240)
T cd08566 125 LDQVIFKSYSEEQAKELRALAP--EVMLMPIVRDAED-----L---------DEEEARAIDALNL--LAFEIT----FDD 182 (240)
T ss_pred cccEEEEECCHHHHHHHHHhCC--CCEEEEEEccCcc-----h---------hHHHHhcccccce--EEEEEe----ccc
Confidence 4899999999999999988 5666653321110 0 0000011111110 001110 111
Q ss_pred -CChHHHHHHHHc-CCeEEEEecCCCCCc--ccCCCCChHHHHHHHHHcCCCccCeEeccCC
Q 003550 328 -PHTTIVLDAHKE-RLEVFASNFANDIPI--SFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (811)
Q Consensus 328 -~~~~~V~~ah~~-Gl~V~~Wtv~n~~~~--~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P 385 (811)
.....+.++|+. |++|++||+|.+... ...+. |+..+|++++++| ||||+||+|
T Consensus 183 ~~~~~~~~~~~~~~Gl~v~~wTvn~~~~~~~~~~~~-~~~~~~~~l~~~G---vd~I~TD~P 240 (240)
T cd08566 183 LDLPPLFDELLRALGIRVWVNTLGDDDTAGLDRALS-DPREVWGELVDAG---VDVIQTDRP 240 (240)
T ss_pred cccHHHHHHHHHhCCCEEEEECCCcccccchhhhhh-CchhHHHHHHHcC---CCEEecCCC
Confidence 125688888888 999999999863110 00111 2358999999999 999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function. |
| >PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=317.47 Aligned_cols=248 Identities=24% Similarity=0.336 Sum_probs=159.9
Q ss_pred CCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCccccccCCC
Q 003550 413 KNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLI 492 (811)
Q Consensus 413 HRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~dlT 492 (811)
|||+++.+||||++||++|++.|+|+||||||+||||++||+||.+|+|+|+ +.| .+.++|
T Consensus 1 HRG~~~~~pENTl~af~~A~~~G~~~iE~Dv~lTkDg~~Vv~HD~~l~r~~~------------------~~~-~i~~~t 61 (256)
T PF03009_consen 1 HRGASGNAPENTLAAFRAAIELGADGIELDVQLTKDGVPVVFHDDTLDRTTG------------------GDG-PISDLT 61 (256)
T ss_dssp TTTTTTTSSTTSHHHHHHHHHTTSSEEEEEEEE-TTS-EEE-SSSBSTTTSS------------------TES-BGGGS-
T ss_pred CCCCCCCChhhHHHHHHHHHHhCCCeEcccccccCCceeEeccCCeeeeecC------------------CCc-eeccCC
Confidence 9999999999999999999999999999999999999999999999999999 444 799999
Q ss_pred HHHHhccC-ccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHh
Q 003550 493 WDEIQTLI-PQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGN 571 (811)
Q Consensus 493 ~~ELk~L~-~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~ 571 (811)
|+||++++ ++.+... ..+...+.+.++||||+|+|+++.... ..+.|++|............++..+.+.+..
T Consensus 62 ~~el~~l~~~~~~~~~----~~~~~~~~~~~~i~tl~e~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (256)
T PF03009_consen 62 YAELKKLRTLGSKNSP----PFRGQRIPGKQKIPTLEEVLELCAKVK--LNLEIKIKSKDEIKDPEFLKIVKDIVESVSD 135 (256)
T ss_dssp HHHHTTSBESSTTTTC----GGTTTTSCTCB--EBHHHHHHHHHTTT--SEEEEEEEECTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCcccccCCcc----cccccceecccccCcHHHHHHhhhhcc--ceeEEEEeecccccchhhccccccccccccc
Confidence 99999999 4322100 112233333367999999999955441 4566666633211100000233344444444
Q ss_pred cC------CCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCcccc
Q 003550 572 AG------YNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFI 644 (811)
Q Consensus 572 ~g------~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l 644 (811)
.. .. .+|+++||++.+|..+++. |.+++++++.................++..... ........ ..
T Consensus 136 ~~~~~~~~~~----~~i~~~sf~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~ 208 (256)
T PF03009_consen 136 ILKNSKQALS----RRIIISSFDPEALKQLKQRAPRYPVGFLFEQDDEAPADISLFELYKFVKCPGF--LASVWNYA-DR 208 (256)
T ss_dssp CHHHHHHHHC----TSEEEEESCHHHHHHHHHHCTTSEEEEEESSCHHHHHH-CCHHHHHHHTTTEE--EEEHGGGG-HH
T ss_pred cccccccccc----cccccccCcHHHHHHHHhcCCCceEEEEeccCccccccchhhHHHHhhccccc--cccccccc-cc
Confidence 33 23 5999999999999999999 999999998753211110000011122221111 00011000 01
Q ss_pred CCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHH
Q 003550 645 TSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMT 704 (811)
Q Consensus 645 ~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~ 704 (811)
...+++|+.+|++|+.|++||+|++. .+++..++ ++||||||||+|++
T Consensus 209 ~~~~~~v~~~~~~g~~v~~wtvn~~~-----------~~~~~~l~-~~gvdgIiTD~P~~ 256 (256)
T PF03009_consen 209 LGNPRLVQEAHKAGLKVYVWTVNDPD-----------VEDMKRLL-DLGVDGIITDFPDT 256 (256)
T ss_dssp CEBHHHHHHHHHTT-EEEEBSB-SHS-----------HHHHHHHH-HHT-SEEEES-HHH
T ss_pred cccHHHHHHHHHCCCEEEEEecCCcH-----------HHHHHHHH-hCCCCEEEEcCCCC
Confidence 11467999999999999999999882 12466676 99999999999986
|
; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B .... |
| >cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=323.42 Aligned_cols=245 Identities=16% Similarity=0.094 Sum_probs=172.8
Q ss_pred EEEeCCCCC-----------CCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhccccccc
Q 003550 94 VVARGGFSG-----------IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNY 162 (811)
Q Consensus 94 viaHRG~~~-----------~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y 162 (811)
||||||+.. .+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++..
T Consensus 2 ~ighrg~~~~~~~~~~~~~~~~~ENTl~Af~~A~~~Gad--~vE~DV~lTkDg~~VV~HD~~l~r~~~g~~--------- 70 (282)
T cd08605 2 VIGHRGLGMNRASHQPSVGPGIRENTIASFIAASKFGAD--FVEFDVQVTRDGVPVIWHDDFIVVERGGEV--------- 70 (282)
T ss_pred eEeccCCCcCcccccccccCCCCCcHHHHHHHHHHcCCC--EEEEEEEECcCCeEEEECCCceecccCCCc---------
Confidence 899999764 3469999999999999999 999999999999999999999999998521
Q ss_pred ccCCCCCCcccccccCHHhhccccccccccCC----------CC----CCCCCCcccccHHHHHHhhCC-CceEEeeccc
Q 003550 163 LVNGVPTPGWFSIDYTLNDLSNIILNQGVYSR----------TD----KFDGNGFQILTVQDMARQIKP-PGLWLNIQHD 227 (811)
Q Consensus 163 ~~~G~~~~g~~v~d~t~~eL~~l~~~~~~~~~----------~~----~~~~~~~~iptL~evl~~~~~-~~l~leiK~~ 227 (811)
.+| .+.|+|++||++++++.++... .. .+...+++||||+|+|+.++. .+++||||.+
T Consensus 71 -~~~------~V~dlT~~EL~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~~~l~IEiK~~ 143 (282)
T cd08605 71 -ESS------RIRDLTLAELKALGPQAESTKTSTVALYRKAKDPEPEPWIMDVEDSIPTLEEVFSEVPPSLGFNIELKFG 143 (282)
T ss_pred -Ccc------chhhCcHHHHHhccccccccccCcchhhccccccccccccccccCCCCCHHHHHHhCCCCccEEEEEecC
Confidence 012 7999999999999987643110 00 011113799999999999865 5799999975
Q ss_pred hhhhhcC---chHHHHHHHHhhhcCc---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCC-ccCCCcccchHHHhhhH
Q 003550 228 AFYAQHN---LSMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKS-EIEPTTNQTYGSLLKNL 300 (811)
Q Consensus 228 ~~~~~~~---~~~~~~l~~~lk~~~~---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~-~~~~~~~~~y~~l~~~L 300 (811)
....... ..+.+.+++++++++. .+|+||+++.|+.++++.| ..++.+++.... .........+.. ..
T Consensus 144 ~~~~~~~~~~~~~~~~v~~~i~~~~~~~~viisSF~~~~l~~l~~~~p--~~~~~~L~~~~~~~~~~~~~~~~~~---~~ 218 (282)
T cd08605 144 DDNKTEAEELVRELRAILAVCKQHAPGRRIMFSSFDPDAAVLLRALQS--LYPVMFLTDCGPYTHNDPRRNSIEA---AI 218 (282)
T ss_pred ccccchHHHHHHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhcCc--cCCEEEEecCCCccccCchhhhHHH---HH
Confidence 4211000 1234668888888765 4999999999999999988 678877442110 000000000000 11
Q ss_pred HHHHh-hcccccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEec--CCCCCcccCCCCChHHHHHHHHHcCCCcc
Q 003550 301 TFIKT-FASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNF--ANDIPISFNYSYDPLTEYLSFIDNGDFSV 377 (811)
Q Consensus 301 ~~i~~-~a~gi~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv--~n~~~~~~~~~~D~~~e~~~~i~~G~~~V 377 (811)
...+. .+.++.++... +...+++|+.||++|++|++||+ |+ .++|++++++| |
T Consensus 219 ~~~~~~~~~~~~~~~~~---------l~~~~~~v~~~~~~Gl~v~vWTv~~n~------------~~~~~~l~~~G---V 274 (282)
T cd08605 219 QVALEGGLQGIVSEVKV---------LLRNPTAVSLVKASGLELGTYGKLNND------------AEAVERQADLG---V 274 (282)
T ss_pred HHHHHcCCceEEecHHH---------hhcCcHHHHHHHHcCcEEEEeCCCCCC------------HHHHHHHHHcC---C
Confidence 11111 23344433222 11236799999999999999998 54 38999999999 9
Q ss_pred CeEeccCC
Q 003550 378 DGVLSDFP 385 (811)
Q Consensus 378 DgIiTD~P 385 (811)
||||||++
T Consensus 275 dgIiTD~~ 282 (282)
T cd08605 275 DGVIVDHV 282 (282)
T ss_pred CEEEeCCC
Confidence 99999986
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs. |
| >KOG2258 consensus Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=341.31 Aligned_cols=335 Identities=39% Similarity=0.559 Sum_probs=285.1
Q ss_pred HHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcchhhhhhhccCCCccccccceeecC
Q 003550 334 LDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISK 413 (811)
Q Consensus 334 ~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~~~~~~~~~~~~~~~~~~~plIIAH 413 (811)
..+|..|+++++|.+.++...+|+|++++..++..++.++.++++++..|+|.+....+.|+.+.+ ...||+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~ 74 (341)
T KOG2258|consen 2 DDAHIAGLEVFASGFANDFSLAFNYSYALILVTLAFLLNVLFSLLFLFSDPPPTASAHKNLFLHIG-------GWLIIAH 74 (341)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhhhhHhhhcCCccchhhhHHHhcCCC-------CceeEec
Confidence 578999999999999999999999999999999999999999999999999999999999998864 7899999
Q ss_pred CCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCccccccCCCH
Q 003550 414 NGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIW 493 (811)
Q Consensus 414 RGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~dlT~ 493 (811)
||++|.+||||++||++|++.|||.||||||+||||++|++||.+..|++++.. .++++||
T Consensus 75 rga~g~~penT~~A~~~a~~~Gad~ie~dV~~TsDg~~v~l~d~~~~r~~~v~~-------------------~~~~lt~ 135 (341)
T KOG2258|consen 75 RGASGDAPENTLAAYKKAIADGADLIELDVQMTSDGVPVILHDSTTVRVTGVPE-------------------IVFDLTW 135 (341)
T ss_pred cCCCCCCCcccHHHHHHHHHcCCcEEEeccccCCCCceEEeecCcceeeeccee-------------------eeccCCH
Confidence 999999999999999999999999999999999999999999999999988543 3899999
Q ss_pred HHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHhcC
Q 003550 494 DEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAG 573 (811)
Q Consensus 494 ~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g 573 (811)
.|++++.+...+++. .+. -..+++++|+|....+-+. +..+..+.. ..+.+.+++.+++.+
T Consensus 136 ~e~~~l~~~~~~~~~------~~~-~~~~~~~~l~e~v~~~~~~-----------n~~~l~d~~-~~~~~~vl~~l~~~~ 196 (341)
T KOG2258|consen 136 MELRKLGPKIENPFA------GPI-ITLEKLLTLAEAVASVVGN-----------NVAMLNDVK-LLVVDKVLEALKNAT 196 (341)
T ss_pred HHHhccCccccCccc------ccc-cchhhhccHHHHHHHHHcC-----------Chhhhhhhh-hhhHHHHHHHHHHHh
Confidence 999999999876541 111 1125778888777777664 122222212 357888999999988
Q ss_pred CCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccCCCH-HHH
Q 003550 574 YNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT-DIV 651 (811)
Q Consensus 574 ~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~-~~V 651 (811)
+.....++|++|||++.+|.++++. |. ++++..++.......+++++++..+..++..++|.......... +++
T Consensus 197 ~~~~~~~kv~v~s~~~~~l~~~~~~~~~----~~i~~~~~~~~ls~~~dik~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 272 (341)
T KOG2258|consen 197 SDFSLYDKVLVQSFNPIVLYRLKKLDPF----ILIGDTWRFTFLSGIEDIKKRAFAVVSSKLAIFPVSDSLVLAITKNVV 272 (341)
T ss_pred cCCCccceEEEEecCcHHHHHhccCCce----EEecceecchhhccchhhhcccceeeechHHHHHHHHHHhhhhhccee
Confidence 7766568999999999999999998 66 55555555544455678899999999988888887655555555 799
Q ss_pred HHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHHHHHHHhcccCCCC
Q 003550 652 QRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRRNRCLKRGD 718 (811)
Q Consensus 652 ~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~~~~~~~~~~~~~~ 718 (811)
..+++.++.|+++.++++ ..+++||+.|+..++..+..+.|++|.+||++.++.++.++.|...-.
T Consensus 273 ~~~~~~~~~v~~~~~~~e-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 338 (341)
T KOG2258|consen 273 APLQKLNLVVYVEVFNNE-VVLAVDFSAAPTIELAGWITNVGIDGYITDFHLTAPRLTDNPCEGLFG 338 (341)
T ss_pred eehhcCCcEEEEEEeecc-ceeeccccccCceEeeeeeccccccCceeeccchhhHhhccccccccc
Confidence 999999999999999999 889999999999999999989999999999999999999999987644
|
|
| >cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=317.86 Aligned_cols=242 Identities=15% Similarity=0.143 Sum_probs=179.5
Q ss_pred cccccceeecCCCCCCCC----------------------CCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccc
Q 003550 403 SKSANLLVISKNGASGDY----------------------PSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (811)
Q Consensus 403 ~~~~~plIIAHRGasg~~----------------------PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~ 460 (811)
...++|+||||||+++.| ||||++||++|++.|+|+||||||+||||++||+||.+|+
T Consensus 19 ~~~~~p~iiaHRG~~~~~~~~~v~~~~~t~~~~~~~~~~~pENTl~Af~~A~~~Gad~IE~DV~lTkDg~lVV~HD~tL~ 98 (309)
T cd08613 19 PPGGKPKLLAHRGLAQTFDREGVENDTCTAERIDPPTHDYLENTIASMQAAFDAGADVVELDVHPTKDGEFAVFHDWTLD 98 (309)
T ss_pred CCCCCceEEeccCCCcccccccccccccccccccCcCCCCCchHHHHHHHHHHcCCCEEEEEEEEccCCeEEEEecCccc
Confidence 455689999999997754 9999999999999999999999999999999999999999
Q ss_pred cccccCCCcCCCccccccccccCccccccCCCHHHHhccCccccCCcccccccCCcCCCC--CCCCCCHHHHHHHHHhcC
Q 003550 461 NSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKN--AGKFMKLSDFLEMAKNAN 538 (811)
Q Consensus 461 rtT~v~~~~f~~r~~~~~~~~~~~G~~v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~--~~~ipTL~E~L~~~k~~~ 538 (811)
|+|+ ++| .+.|+||+||++|+.+.+.+.. .+ ....+++ .++||||+|+|+++++.
T Consensus 99 R~T~------------------g~g-~V~dlTlaEL~~Ld~g~~~~~~-~g--~~~p~~~~~~~~IPTL~EvL~~~~~~- 155 (309)
T cd08613 99 CRTD------------------GSG-VTRDHTMAELKTLDIGYGYTAD-GG--KTFPFRGKGVGMMPTLDEVFAAFPDR- 155 (309)
T ss_pred cccC------------------CCC-chhhCCHHHHhhCCcCcccccc-cc--cccccccCCCCCCcCHHHHHHhcCCC-
Confidence 9998 667 7999999999999998653210 00 0011222 24799999999999763
Q ss_pred CCceEEEEecchhHHHhhcCccHHHHHHHHHHhcCCCCCCCcEEEEEeCC--hHHHHHHHhc-cCceEEEEEccccchhc
Q 003550 539 SLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD--SSVLMKLREK-TSYELVYKVKENIRDAL 615 (811)
Q Consensus 539 ~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd--~~~L~~lk~~-p~~~~~~l~~~~~~d~~ 615 (811)
.++||||.+.. ...+.+.+++++++.. ++.+.||+ +..|++++++ |++++.-.-.
T Consensus 156 ---~l~IEiK~~~~-------~~~~~v~~~i~~~~~~-----r~~v~sf~s~~~~l~~~r~l~P~~~~~s~~~------- 213 (309)
T cd08613 156 ---RFLINFKSDDA-------AEGELLAEKLATLPRK-----RLQVLTVYGGDKPIAALRELTPDLRTLSKAS------- 213 (309)
T ss_pred ---cEEEEeCCCCc-------cHHHHHHHHHHhcCcc-----ceEEEEEECCHHHHHHHHHHCCCCceecccc-------
Confidence 79999997542 1356888999988874 66667776 7789999999 9887651110
Q ss_pred hHhHHHHHHhh----hhhcccc----ceeecCCc-cccCC-CHHHHHHHHHcCCcEEEE----------ecCCccccccc
Q 003550 616 NQTIEDIKKFA----DSVVLSK----ESVYPLNS-AFITS-ATDIVQRLQSFKLPVYVE----------TFSNEFVSQAW 675 (811)
Q Consensus 616 ~~~l~~i~~~a----~~v~~~~----~~i~p~~~-~~l~~-~~~~V~~~~~~Gl~V~vw----------tvnne~~~~~~ 675 (811)
.......|+ .+..+.. ...+|... .++.. +..+++++|++|.+|++| |+|++
T Consensus 214 --~~~~~~~~~~~~~~g~~p~~~~~~~~~vP~~~~~~~~~w~~~f~~~~~~~g~~V~~~~~~~~~~~~~~~d~~------ 285 (309)
T cd08613 214 --MKDCLIEYLALGWTGYVPDSCRNTTLLIPLNYAPWLWGWPNRFLARMEAAGTRVILVGPYTGGEFSEGFDTP------ 285 (309)
T ss_pred --hHHHHHHHHhhcccccCCccccCCeEecCccccceEEeCCHHHHHHHHHcCCeEEEEecccCCcccCCCCCH------
Confidence 011111221 1111111 11234332 23445 788999999999999999 56655
Q ss_pred ccCCChHHHHHHHHHhcCCCEEEeCChHHH
Q 003550 676 DFFSDPTVEINTYYEGAGIDGVITEFPMTA 705 (811)
Q Consensus 676 d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~ 705 (811)
+++.+++ +.|+|||+||+|+.+
T Consensus 286 -------~~~~~l~-~~~~~gi~T~r~~~l 307 (309)
T cd08613 286 -------EDLKRLP-EGFTGYIWTNKIEAL 307 (309)
T ss_pred -------HHHHHHH-hhCCCeEEeCCHhhc
Confidence 4799998 999999999999875
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet. |
| >cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=316.08 Aligned_cols=259 Identities=13% Similarity=0.127 Sum_probs=183.2
Q ss_pred CCcccccCCCCCEEEEeCCCCCCC----------------------CchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEE
Q 003550 81 TSRWQTLTGDPPFVVARGGFSGIF----------------------PDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGI 138 (811)
Q Consensus 81 ~~~~~~l~~~~plviaHRG~~~~~----------------------PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v 138 (811)
++.+.....+.|+||||||+++.| ||||++||+.|++.|+| +||||||+||||++|
T Consensus 13 ~~~~~~~~~~~p~iiaHRG~~~~~~~~~v~~~~~t~~~~~~~~~~~pENTl~Af~~A~~~Gad--~IE~DV~lTkDg~lV 90 (309)
T cd08613 13 TSLLAPPPGGKPKLLAHRGLAQTFDREGVENDTCTAERIDPPTHDYLENTIASMQAAFDAGAD--VVELDVHPTKDGEFA 90 (309)
T ss_pred hhhhccCCCCCceEEeccCCCcccccccccccccccccccCcCCCCCchHHHHHHHHHHcCCC--EEEEEEEEccCCeEE
Confidence 445555667889999999997654 99999999999999999 999999999999999
Q ss_pred EecCCCCCCCcchhhhhcccccccccCCCCCCcccccccCHHhhccccccccccCC---CCCCCCC-CcccccHHHHHHh
Q 003550 139 CFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSR---TDKFDGN-GFQILTVQDMARQ 214 (811)
Q Consensus 139 ~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~v~d~t~~eL~~l~~~~~~~~~---~~~~~~~-~~~iptL~evl~~ 214 (811)
|+||.+|+|+|++.+ .+.|+|++||+++++++++... ...|.+. ..+||||+|+|++
T Consensus 91 V~HD~tL~R~T~g~g-------------------~V~dlTlaEL~~Ld~g~~~~~~~g~~~p~~~~~~~~IPTL~EvL~~ 151 (309)
T cd08613 91 VFHDWTLDCRTDGSG-------------------VTRDHTMAELKTLDIGYGYTADGGKTFPFRGKGVGMMPTLDEVFAA 151 (309)
T ss_pred EEecCccccccCCCC-------------------chhhCCHHHHhhCCcCcccccccccccccccCCCCCCcCHHHHHHh
Confidence 999999999998876 7999999999999998765321 1123331 2479999999999
Q ss_pred hCCCceEEeeccchhhhhcCchHHHHHHHHhhhcCce--EEecCC--HHHHHHHHHhcCCCCcceeeeecCCCccCCCcc
Q 003550 215 IKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVN--YISSPE--VNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTN 290 (811)
Q Consensus 215 ~~~~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~~~--~isSf~--~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~ 290 (811)
++..+++||||.+. ....+.+.+++++++.. .+.||+ ...+++++++.| +.++.- ...
T Consensus 152 ~~~~~l~IEiK~~~------~~~~~~v~~~i~~~~~~r~~v~sf~s~~~~l~~~r~l~P--~~~~~s----~~~------ 213 (309)
T cd08613 152 FPDRRFLINFKSDD------AAEGELLAEKLATLPRKRLQVLTVYGGDKPIAALRELTP--DLRTLS----KAS------ 213 (309)
T ss_pred cCCCcEEEEeCCCC------ccHHHHHHHHHHhcCccceEEEEEECCHHHHHHHHHHCC--CCceec----ccc------
Confidence 98888999999753 12346788888887753 445666 777999999987 343331 100
Q ss_pred cchHHHhhh-HHHHHhhcccccCCC----cccccCCCcccCCC-ChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHH
Q 003550 291 QTYGSLLKN-LTFIKTFASGILVPK----DYIWPVDESLYLLP-HTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLT 364 (811)
Q Consensus 291 ~~y~~l~~~-L~~i~~~a~gi~~~~----~~i~~~~~~~~l~~-~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~ 364 (811)
+... +..+...-+|..+.. ....|.+....+-. +..+++.||++|.+|++|.-.. ..-+....|..+
T Consensus 214 -----~~~~~~~~~~~~~~g~~p~~~~~~~~~vP~~~~~~~~~w~~~f~~~~~~~g~~V~~~~~~~--~~~~~~~~d~~~ 286 (309)
T cd08613 214 -----MKDCLIEYLALGWTGYVPDSCRNTTLLIPLNYAPWLWGWPNRFLARMEAAGTRVILVGPYT--GGEFSEGFDTPE 286 (309)
T ss_pred -----hHHHHHHHHhhcccccCCccccCCeEecCccccceEEeCCHHHHHHHHHcCCeEEEEeccc--CCcccCCCCCHH
Confidence 0001 111111112222211 11123322223333 5789999999999999994210 011222356679
Q ss_pred HHHHHHHcCCCccCeEeccCCCCc
Q 003550 365 EYLSFIDNGDFSVDGVLSDFPLTP 388 (811)
Q Consensus 365 e~~~~i~~G~~~VDgIiTD~P~~a 388 (811)
+|+++.+.| +|||+||+|+.+
T Consensus 287 ~~~~l~~~~---~~gi~T~r~~~l 307 (309)
T cd08613 287 DLKRLPEGF---TGYIWTNKIEAL 307 (309)
T ss_pred HHHHHHhhC---CCeEEeCCHhhc
Confidence 999999999 999999999864
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet. |
| >COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=307.55 Aligned_cols=242 Identities=24% Similarity=0.310 Sum_probs=191.7
Q ss_pred CCEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCC
Q 003550 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (811)
Q Consensus 91 ~plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~ 170 (811)
.|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|||++.+
T Consensus 5 ~~~iiaHRG~s~~~PENTl~Af~~A~~~gad--~iE~Dv~lTkDg~lVv~HD~~~drt~~~~~----------------- 65 (257)
T COG0584 5 MPLIIAHRGASGYAPENTLAAFELAAEQGAD--YIELDVQLTKDGVLVVIHDETLDRTTNGLG----------------- 65 (257)
T ss_pred ceEEEeccCcCCCCCcchHHHHHHHHHcCCC--EEEeeccCccCCcEEEecccchhhhccCcc-----------------
Confidence 5799999999999999999999999999999 999999999999999999999999999876
Q ss_pred cccccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC-CCceEEeeccchhhhhcCchHHHHHHHHhhhc-
Q 003550 171 GWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK-PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSV- 248 (811)
Q Consensus 171 g~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~-~~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~- 248 (811)
.+.++|++|+++++.+.+ ....| + +.+|||+|+++.+. ..++++|+|.+....+... +...++..+++.
T Consensus 66 --~~~~~~~~~~~~~~~~~~---~~~~~-~--~~ip~l~~~l~~~~~~~~l~ieiK~~~~~~~~~~-~~~~~~~~~~~~~ 136 (257)
T COG0584 66 --TVRDLTLAELKRLDAGSF---RIPTF-G--EEIPTLEELLEATGRKIGLYIEIKSPGFHPQEGK-ILAALLALLKRYG 136 (257)
T ss_pred --ccccCChhhhcCcccCcc---cCCCC-C--CccCCHHHHHHHhcccCCeEEEecCCCcccchhh-hHHHHHHHHHHhc
Confidence 677999999999995542 23444 3 69999999999884 5899999998765543322 345555555443
Q ss_pred C-----ceEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHH--hhhHHHHHhhcccccCCCcccccCC
Q 003550 249 V-----VNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSL--LKNLTFIKTFASGILVPKDYIWPVD 321 (811)
Q Consensus 249 ~-----~~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l--~~~L~~i~~~a~gi~~~~~~i~~~~ 321 (811)
+ ..++|||+.+.++.+++..| ..++++++..... |..+ ...+..+..++.++++.+..+.+.
T Consensus 137 ~~~~~~~v~~~Sf~~~~l~~~~~~~p--~~~~~~l~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~- 205 (257)
T COG0584 137 GTAADDRVILSSFDHAALKRIKRLAP--DLPLGLLLDATDQ--------YDWMELPRALKEVALYADGVGPDWAMLAEL- 205 (257)
T ss_pred ccCCCCceEEEecCHHHHHHHHHhCc--CCceEEEEcccch--------hhhhhccchhhHHHhhhcccCcccceeccc-
Confidence 2 35999999999999999988 6788874432210 2222 225666777888877765544321
Q ss_pred CcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcchhhh
Q 003550 322 ESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVD 393 (811)
Q Consensus 322 ~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~~~~~ 393 (811)
.+..+..+|..|+.|++|||+++ +.+..+.+.| ||||+||+|+.+.+.++
T Consensus 206 -------~~~~v~~~~~~gl~v~~~tv~~~------------~~~~~~~~~g---vd~i~td~p~~~~~~~~ 255 (257)
T COG0584 206 -------LTELVDDAHAAGLKVHVWTVNEE------------DDIRLLLEAG---VDGLITDFPDLAVAFLN 255 (257)
T ss_pred -------ccHHHHHHHhCCCeEEEEecCcH------------HHHHHHHHcC---CCEEEcCCHHHHHHhhc
Confidence 35699999999999999999975 4488999999 99999999998876653
|
|
| >cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=303.53 Aligned_cols=226 Identities=16% Similarity=0.059 Sum_probs=167.4
Q ss_pred CEEEEeCCCCCC---CCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCC
Q 003550 92 PFVVARGGFSGI---FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVP 168 (811)
Q Consensus 92 plviaHRG~~~~---~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~ 168 (811)
+.+|||||+++. +||||++||+.|++.|+ +||+|||+||||++||+||.+|+|+|++.+
T Consensus 4 ~~~iaHRG~~~~~~~~pENTl~af~~A~~~G~---~iE~DV~lT~Dg~lVv~HD~~l~r~t~~~~--------------- 65 (237)
T cd08585 4 DRPIAHRGLHDRDAGIPENSLSAFRAAAEAGY---GIELDVQLTADGEVVVFHDDNLKRLTGVEG--------------- 65 (237)
T ss_pred CCceECCCCCCCCCCCCccHHHHHHHHHHcCC---cEEEEeeECCCCCEEEeccchHhhhcCCCC---------------
Confidence 348999999874 79999999999999995 699999999999999999999999998765
Q ss_pred CCcccccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC-CceEEeeccchhhhhcCchHHHHHHHHhhh
Q 003550 169 TPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSVSRS 247 (811)
Q Consensus 169 ~~g~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~-~~l~leiK~~~~~~~~~~~~~~~l~~~lk~ 247 (811)
.+.++|++||++++++. . +++||||+|+|+.+++ ..++||||.+.. ....+++.+++++++
T Consensus 66 ----~v~~~t~~eL~~l~~~~---------~--~~~iPtL~evl~~~~~~~~l~iEiK~~~~---~~~~l~~~v~~~l~~ 127 (237)
T cd08585 66 ----RVEELTAAELRALRLLG---------T--DEHIPTLDEVLELVAGRVPLLIELKSCGG---GDGGLERRVLAALKD 127 (237)
T ss_pred ----ccccCCHHHHhcCCCCC---------C--CCCCCCHHHHHHHhccCceEEEEEccCCc---cchHHHHHHHHHHHh
Confidence 78999999999998753 2 3799999999999965 579999997542 234577888888887
Q ss_pred cCc-eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHH-HHHhhcccccCCCcccccCCCccc
Q 003550 248 VVV-NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLT-FIKTFASGILVPKDYIWPVDESLY 325 (811)
Q Consensus 248 ~~~-~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~-~i~~~a~gi~~~~~~i~~~~~~~~ 325 (811)
++. .+|+||+...++++++..| +.++.+++.... .........+.+...+. .....++.+.+++..
T Consensus 128 ~~~~v~i~SF~~~~l~~l~~~~p--~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 195 (237)
T cd08585 128 YKGPAAIMSFDPRVVRWFRKLAP--GIPRGQLSEGSN-DEADPAFWNEALLSALFSNLLTRPDFIAYHLDD--------- 195 (237)
T ss_pred cCCCEEEEECCHHHHHHHHHHCC--CCCEEEEecCCc-ccccccchhHHHHHhhhhhhccCCCEEEeChhh---------
Confidence 753 5899999999999999998 677776432111 00000000000001000 000012222222111
Q ss_pred CCCChHHHHHHHHc-CCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEec
Q 003550 326 LLPHTTIVLDAHKE-RLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLS 382 (811)
Q Consensus 326 l~~~~~~V~~ah~~-Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiT 382 (811)
...++|+.+|++ |++|++||||++ ++|++++++| +++|+-
T Consensus 196 --~~~~~v~~~~~~~G~~v~vWTVnd~------------~~~~~l~~~G---~~~i~~ 236 (237)
T cd08585 196 --LPNPFVTLARALLGMPVIVWTVRTE------------EDIARLKQYA---DNIIFE 236 (237)
T ss_pred --CcCHHHHHHHHhcCCcEEEEeCCCH------------HHHHHHHHhC---CeeEeC
Confidence 135699999999 999999999865 8999999999 999873
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=300.76 Aligned_cols=224 Identities=10% Similarity=0.133 Sum_probs=163.6
Q ss_pred EEEeCCC--CCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCc-chhhhhcccccccccCCCCCC
Q 003550 94 VVARGGF--SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNAS-NIAQIFKTQQKNYLVNGVPTP 170 (811)
Q Consensus 94 viaHRG~--~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT-~~~~~~~~~~~~y~~~G~~~~ 170 (811)
.|||||+ ++.+||||+.||+.|++.|++ +||+|||+||||++||+||.+++|+. .+.. .++
T Consensus 1 ~~aHRG~G~~~~~pENTl~Af~~A~~~G~d--~iE~DV~lTkDg~lVv~HD~~~~r~~~~g~~----------~~~---- 64 (237)
T cd08583 1 LIAHAMGGIDGKTYTNSLDAFEHNYKKGYR--VFEVDLSLTSDGVLVARHSWDESLLKQLGLP----------TSK---- 64 (237)
T ss_pred CeeecCCCCCCCCCccHHHHHHHHHHhCCC--EEEEEeeEccCCCEEEEECCcCchhhhcCCc----------ccc----
Confidence 4899996 789999999999999999999 99999999999999999999998752 2110 011
Q ss_pred cccccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC---CceEEeeccchhhhhcCchHHHHHHHHhhh
Q 003550 171 GWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP---PGLWLNIQHDAFYAQHNLSMRSFVLSVSRS 247 (811)
Q Consensus 171 g~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~---~~l~leiK~~~~~~~~~~~~~~~l~~~lk~ 247 (811)
.+.++|++||++++.. .+ ++||||+|+++++++ ..++||||.+.. .....+...+++.+++
T Consensus 65 --~i~~~t~~el~~~~~~----------~~--~~iptL~evl~~~~~~~~~~l~iEiK~~~~--~~~~~~~~~l~~~~~~ 128 (237)
T cd08583 65 --NTKPLSYEEFKSKKIY----------GK--YTPMDFKDVIDLLKKYPDVYIVTDTKQDDD--NDIKKLYEYIVKEAKE 128 (237)
T ss_pred --cccCCCHHHHhhcccc----------CC--CCCCCHHHHHHHHHhCCCeEEEEEecCCCc--ccHHHHHHHHHHHHHh
Confidence 5889999999887642 33 799999999999963 358899996532 1112356678888877
Q ss_pred cC--c---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHh-hcccccCCCcccccCC
Q 003550 248 VV--V---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVD 321 (811)
Q Consensus 248 ~~--~---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~-~a~gi~~~~~~i~~~~ 321 (811)
++ + .+++||+...|+.+++..| ....++....... ..... .+..++. .+.++.+++.+
T Consensus 129 ~~~~~~~~v~~~SF~~~~L~~~~~~~p--~~~~~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~~~~~~----- 192 (237)
T cd08583 129 VDPDLLDRVIPQIYNEEMYEAIMSIYP--FKSVIYTLYRQDS------IRLDE---IIAFCYENGIKAVTISKNY----- 192 (237)
T ss_pred hcccccceeEEEecCHHHHHHHHHhCC--CcceeeEeccccc------cchHH---HHHHHHHcCCcEEEechhh-----
Confidence 52 3 4899999999999999887 3334432221110 00001 1111122 13334443322
Q ss_pred CcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCC
Q 003550 322 ESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPL 386 (811)
Q Consensus 322 ~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~ 386 (811)
..+++|+.+|++|++|++||||+. ++|++++++| ||||+||+|.
T Consensus 193 ------~~~~~v~~~~~~Gl~v~vwTVn~~------------~~~~~l~~~G---VdgiiTD~~~ 236 (237)
T cd08583 193 ------VNDKLIEKLNKAGIYVYVYTINDL------------KDAQEYKKLG---VYGIYTDFLT 236 (237)
T ss_pred ------cCHHHHHHHHHCCCEEEEEeCCCH------------HHHHHHHHcC---CCEEEeCCCC
Confidence 236799999999999999999864 8999999999 9999999985
|
This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues. |
| >PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=296.33 Aligned_cols=239 Identities=24% Similarity=0.315 Sum_probs=154.5
Q ss_pred eCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCcccccc
Q 003550 97 RGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSID 176 (811)
Q Consensus 97 HRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~v~d 176 (811)
|||+++.+||||++||+.|++.|++ +||||||+||||++||+||.+++|+|++.+ .+.|
T Consensus 1 HRG~~~~~pENTl~af~~A~~~G~~--~iE~Dv~lTkDg~~Vv~HD~~l~r~~~~~~-------------------~i~~ 59 (256)
T PF03009_consen 1 HRGASGNAPENTLAAFRAAIELGAD--GIELDVQLTKDGVPVVFHDDTLDRTTGGDG-------------------PISD 59 (256)
T ss_dssp TTTTTTTSSTTSHHHHHHHHHTTSS--EEEEEEEE-TTS-EEE-SSSBSTTTSSTES-------------------BGGG
T ss_pred CCCCCCCChhhHHHHHHHHHHhCCC--eEcccccccCCceeEeccCCeeeeecCCCc-------------------eecc
Confidence 9999999999999999999999999 999999999999999999999999999876 7999
Q ss_pred cCHHhhcccc-cccc--ccCCCCCCCCCCcccccHHHHHHhhCCCceEE--eeccchhhhhcCc-hHHHHHHHHhhhc--
Q 003550 177 YTLNDLSNII-LNQG--VYSRTDKFDGNGFQILTVQDMARQIKPPGLWL--NIQHDAFYAQHNL-SMRSFVLSVSRSV-- 248 (811)
Q Consensus 177 ~t~~eL~~l~-~~~~--~~~~~~~~~~~~~~iptL~evl~~~~~~~l~l--eiK~~~~~~~~~~-~~~~~l~~~lk~~-- 248 (811)
+||+||++++ +..+ ...+...+.+ ..+||||+|+|+++...++.+ ++|.......... .+...++..+...
T Consensus 60 ~t~~el~~l~~~~~~~~~~~~~~~~~~-~~~i~tl~e~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (256)
T PF03009_consen 60 LTYAELKKLRTLGSKNSPPFRGQRIPG-KQKIPTLEEVLELCAKVKLNLEIKIKSKDEIKDPEFLKIVKDIVESVSDILK 138 (256)
T ss_dssp S-HHHHTTSBESSTTTTCGGTTTTSCT-CB--EBHHHHHHHHHTTTSEEEEEEEECTTSHHHHHHHHHHHHHHHHHHCHH
T ss_pred CCHHHHhhCcccccCCcccccccceec-ccccCcHHHHHHhhhhccceeEEEEeecccccchhhcccccccccccccccc
Confidence 9999999999 4322 1223333333 358999999999965555444 4443211111101 2233333333333
Q ss_pred -------CceEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHH--HhhhHHHHHhhcccccCCCccccc
Q 003550 249 -------VVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGS--LLKNLTFIKTFASGILVPKDYIWP 319 (811)
Q Consensus 249 -------~~~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~--l~~~L~~i~~~a~gi~~~~~~i~~ 319 (811)
...+++||+...++.+++..| ..++++++..... .+.+ .......+.. .++.. .++.
T Consensus 139 ~~~~~~~~~i~~~sf~~~~l~~l~~~~~--~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~---~~~~ 204 (256)
T PF03009_consen 139 NSKQALSRRIIISSFDPEALKQLKQRAP--RYPVGFLFEQDDE-------APADISLFELYKFVKC--PGFLA---SVWN 204 (256)
T ss_dssp HHHHHHCTSEEEEESCHHHHHHHHHHCT--TSEEEEEESSCHH-------HHHH-CCHHHHHHHTT--TEEEE---EHGG
T ss_pred ccccccccccccccCcHHHHHHHHhcCC--CceEEEEeccCcc-------ccccchhhHHHHhhcc--ccccc---cccc
Confidence 235899999999999999998 5777765432211 0111 0001112211 11111 0111
Q ss_pred CCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCC
Q 003550 320 VDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLT 387 (811)
Q Consensus 320 ~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~ 387 (811)
.. .....+++|+.+|++|++|++||||++ +.++++++++.| ||||+||+|+|
T Consensus 205 ~~---~~~~~~~~v~~~~~~g~~v~~wtvn~~----------~~~~~~~l~~~g---vdgIiTD~P~~ 256 (256)
T PF03009_consen 205 YA---DRLGNPRLVQEAHKAGLKVYVWTVNDP----------DVEDMKRLLDLG---VDGIITDFPDT 256 (256)
T ss_dssp GG---HHCEBHHHHHHHHHTT-EEEEBSB-SH----------SHHHHHHHHHHT----SEEEES-HHH
T ss_pred cc---cccccHHHHHHHHHCCCEEEEEecCCc----------HHHHHHHHHhCC---CCEEEEcCCCC
Confidence 10 001136799999999999999999863 148999999999 99999999964
|
; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B .... |
| >cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=278.82 Aligned_cols=188 Identities=27% Similarity=0.324 Sum_probs=152.9
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccccc
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~ 489 (811)
||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||
T Consensus 1 i~aHRG~~~~~pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hd--------------------------------- 47 (189)
T cd08556 1 IIAHRGASGEAPENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHD--------------------------------- 47 (189)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcC---------------------------------
Confidence 68999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHH
Q 003550 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (811)
Q Consensus 490 dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L 569 (811)
+|||+|+|+++++. ..++||+|.+.. +..+++.+++++
T Consensus 48 ----------------------------------i~tL~e~l~~~~~~---~~i~leiK~~~~-----~~~~~~~l~~~i 85 (189)
T cd08556 48 ----------------------------------IPTLEEVLELVKGG---VGLNIELKEPTR-----YPGLEAKVAELL 85 (189)
T ss_pred ----------------------------------CCCHHHHHHhcccC---cEEEEEECCCCC-----chhHHHHHHHHH
Confidence 68999999999873 689999997643 124678899999
Q ss_pred HhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccCCCH
Q 003550 570 GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648 (811)
Q Consensus 570 ~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~ 648 (811)
++++.. ++|+|+||++..+.++++. |+++++++++......... .......++.+.++. ....+
T Consensus 86 ~~~~~~----~~v~i~s~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~----------~~~~~ 150 (189)
T cd08556 86 REYGLE----ERVVVSSFDHEALRALKELDPEVPTGLLVDKPPLDPLLA-ELARALGADAVNPHY----------KLLTP 150 (189)
T ss_pred HHcCCc----CCEEEEeCCHHHHHHHHHhCCCCcEEEEeecCcccchhh-hHHHhcCCeEEccCh----------hhCCH
Confidence 999876 7999999999999999999 9999999987642211100 001111122233321 12457
Q ss_pred HHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCC
Q 003550 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (811)
Q Consensus 649 ~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~ 701 (811)
.+++.+|++|++|++||+|+.. ++..++ ++|||||+||+
T Consensus 151 ~~i~~~~~~g~~v~~wtvn~~~-------------~~~~~~-~~GVdgI~TD~ 189 (189)
T cd08556 151 ELVRAAHAAGLKVYVWTVNDPE-------------DARRLL-ALGVDGIITDD 189 (189)
T ss_pred HHHHHHHHcCCEEEEEcCCCHH-------------HHHHHH-HCCCCEEecCC
Confidence 8999999999999999999874 577776 99999999996
|
The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho |
| >cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=255.94 Aligned_cols=185 Identities=21% Similarity=0.166 Sum_probs=147.6
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCccc
Q 003550 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (811)
Q Consensus 94 viaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~ 173 (811)
||||||+++.+||||++||+.|++.|++ +||+|||+||||++||+||
T Consensus 1 i~aHRG~~~~~pent~~a~~~a~~~g~~--~iE~Dv~~tkDg~~vv~Hd------------------------------- 47 (189)
T cd08556 1 IIAHRGASGEAPENTLAAFRKALEAGAD--GVELDVQLTKDGVLVVIHD------------------------------- 47 (189)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCC--EEEEEeeEcCCCCEEEEcC-------------------------------
Confidence 6899999999999999999999999999 9999999999999999999
Q ss_pred ccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC-CceEEeeccchhhhhcCchHHHHHHHHhhhcCc--
Q 003550 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV-- 250 (811)
Q Consensus 174 v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~-~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~~-- 250 (811)
+|||+|+|+++++ ..+++|+|.+.. ...+.+.+++++++++.
T Consensus 48 -------------------------------i~tL~e~l~~~~~~~~i~leiK~~~~----~~~~~~~l~~~i~~~~~~~ 92 (189)
T cd08556 48 -------------------------------IPTLEEVLELVKGGVGLNIELKEPTR----YPGLEAKVAELLREYGLEE 92 (189)
T ss_pred -------------------------------CCCHHHHHHhcccCcEEEEEECCCCC----chhHHHHHHHHHHHcCCcC
Confidence 6899999999985 679999997643 33567889999999864
Q ss_pred -eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCcccccCCCcccCCCC
Q 003550 251 -NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPH 329 (811)
Q Consensus 251 -~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~~i~~~~~~~~l~~~ 329 (811)
.+++||+...++.+++..| +.++.+........+ ... .......+.++.+++.. ..
T Consensus 93 ~v~i~s~~~~~l~~~~~~~p--~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~v~~~~~~-----------~~ 149 (189)
T cd08556 93 RVVVSSFDHEALRALKELDP--EVPTGLLVDKPPLDP-------LLA---ELARALGADAVNPHYKL-----------LT 149 (189)
T ss_pred CEEEEeCCHHHHHHHHHhCC--CCcEEEEeecCcccc-------hhh---hHHHhcCCeEEccChhh-----------CC
Confidence 5999999999999999988 667776443221110 000 00111224444443322 23
Q ss_pred hHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccC
Q 003550 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDF 384 (811)
Q Consensus 330 ~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~ 384 (811)
..+++.+|++|++|++||+|+. +++++++..| ||||+||+
T Consensus 150 ~~~i~~~~~~g~~v~~wtvn~~------------~~~~~~~~~G---VdgI~TD~ 189 (189)
T cd08556 150 PELVRAAHAAGLKVYVWTVNDP------------EDARRLLALG---VDGIITDD 189 (189)
T ss_pred HHHHHHHHHcCCEEEEEcCCCH------------HHHHHHHHCC---CCEEecCC
Confidence 6799999999999999999764 8999999999 99999996
|
The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho |
| >cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=255.31 Aligned_cols=174 Identities=20% Similarity=0.166 Sum_probs=135.0
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccccc
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~ 489 (811)
||||||+++.+||||+.||++|++.|+++||+|||+||||++|++||.+++|+|.
T Consensus 1 iiaHRG~~~~~peNT~~af~~a~~~G~~~iE~DV~lt~Dg~lvv~HD~~~~r~~~------------------------- 55 (179)
T cd08555 1 VLSHRGYSQNGQENTLEAFYRALDAGARGLELDVRLTKDGELVVYHGPTLDRTTA------------------------- 55 (179)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEEeEcCCCeEEEECCCccccccC-------------------------
Confidence 6899999999999999999999999999999999999999999999999987530
Q ss_pred CCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcC----CCceEEEEecchhHHHhhcCccHHHHH
Q 003550 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNAN----SLSGVLISIENAVYLAEKQGMSVTNSV 565 (811)
Q Consensus 490 dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~----~~~gi~IEiK~~~~~~~~~g~~~~~~v 565 (811)
.+++|||+|+|+++++.. ..+.++||+|.+... ...+.+++
T Consensus 56 -------------------------------~~~~ptl~evl~~~~~~~~~~~~~~~l~iEiK~~~~~----~~~~~~~~ 100 (179)
T cd08555 56 -------------------------------GILPPTLEEVLELIADYLKNPDYTIILSLEIKQDSPE----YDEFLAKV 100 (179)
T ss_pred -------------------------------CCCCCCHHHHHHHHHhhhhcCCCceEEEEEeCCCCCc----chHHHHHH
Confidence 157999999999999831 126899999966431 12467789
Q ss_pred HHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhccCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccC
Q 003550 566 MEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFIT 645 (811)
Q Consensus 566 ~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~ 645 (811)
++.++++++... .++|+++||. . + +++...+.+ ...
T Consensus 101 ~~~~~~~~~~~~-~~~v~i~sf~--------~---------~----------------------~~~~~~~~~----~~~ 136 (179)
T cd08555 101 LKELRVYFDYDL-RGKVVLSSFN--------A---------L----------------------GVDYYNFSS----KLI 136 (179)
T ss_pred HHHHHHcCCccc-CCCEEEEeec--------c---------c----------------------CCChhcccc----hhh
Confidence 999999873211 1699999990 0 0 000000000 112
Q ss_pred CCHHHHHHHHHcCCcEEEEecCC-cccccccccCCChHHHHHHHHHhcCCCEEEeCC
Q 003550 646 SATDIVQRLQSFKLPVYVETFSN-EFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (811)
Q Consensus 646 ~~~~~V~~~~~~Gl~V~vwtvnn-e~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~ 701 (811)
..+++|+++|++|++|++||+|+ .. ++..++ ++||||||||+
T Consensus 137 ~~~~~v~~~~~~g~~v~~wtvn~~~~-------------~~~~l~-~~Gvd~i~TD~ 179 (179)
T cd08555 137 KDTELIASANKLGLLSRIWTVNDNNE-------------IINKFL-NLGVDGLITDF 179 (179)
T ss_pred cCHHHHHHHHHCCCEEEEEeeCChHH-------------HHHHHH-HcCCCEEeCCC
Confidence 35789999999999999999998 53 577777 99999999996
|
The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph |
| >cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=239.58 Aligned_cols=165 Identities=25% Similarity=0.266 Sum_probs=130.4
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCccc
Q 003550 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (811)
Q Consensus 94 viaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~ 173 (811)
||||||+++.+||||+.||+.|++.|++ ++|+|||+||||++|++||.+++|+|.
T Consensus 1 iiaHRG~~~~~peNT~~af~~a~~~G~~--~iE~DV~lt~Dg~lvv~HD~~~~r~~~----------------------- 55 (179)
T cd08555 1 VLSHRGYSQNGQENTLEAFYRALDAGAR--GLELDVRLTKDGELVVYHGPTLDRTTA----------------------- 55 (179)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEeEcCCCeEEEECCCccccccC-----------------------
Confidence 6899999999999999999999999999 999999999999999999999988760
Q ss_pred ccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--------CceEEeeccchhhhhcCchHHHHHHHHh
Q 003550 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--------PGLWLNIQHDAFYAQHNLSMRSFVLSVS 245 (811)
Q Consensus 174 v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~--------~~l~leiK~~~~~~~~~~~~~~~l~~~l 245 (811)
++++|||+|+|+++++ ..++||+|.+.. ....+.+.+++.+
T Consensus 56 ----------------------------~~~~ptl~evl~~~~~~~~~~~~~~~l~iEiK~~~~---~~~~~~~~~~~~~ 104 (179)
T cd08555 56 ----------------------------GILPPTLEEVLELIADYLKNPDYTIILSLEIKQDSP---EYDEFLAKVLKEL 104 (179)
T ss_pred ----------------------------CCCCCCHHHHHHHHHhhhhcCCCceEEEEEeCCCCC---cchHHHHHHHHHH
Confidence 2589999999999864 468999997642 2345677888888
Q ss_pred hhcC---c---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCccccc
Q 003550 246 RSVV---V---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWP 319 (811)
Q Consensus 246 k~~~---~---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~~i~~ 319 (811)
++++ . .+++|| ... ..... ....
T Consensus 105 ~~~~~~~~~~~v~i~sf---------~~~------------~~~~~-------------------~~~~----------- 133 (179)
T cd08555 105 RVYFDYDLRGKVVLSSF---------NAL------------GVDYY-------------------NFSS----------- 133 (179)
T ss_pred HHcCCcccCCCEEEEee---------ccc------------CCChh-------------------cccc-----------
Confidence 8876 3 488888 000 00000 0000
Q ss_pred CCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccC
Q 003550 320 VDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDF 384 (811)
Q Consensus 320 ~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~ 384 (811)
+....+++|+++|++|++|++||+|.+ .++++++++.| ||||+||+
T Consensus 134 -----~~~~~~~~v~~~~~~g~~v~~wtvn~~-----------~~~~~~l~~~G---vd~i~TD~ 179 (179)
T cd08555 134 -----KLIKDTELIASANKLGLLSRIWTVNDN-----------NEIINKFLNLG---VDGLITDF 179 (179)
T ss_pred -----hhhcCHHHHHHHHHCCCEEEEEeeCCh-----------HHHHHHHHHcC---CCEEeCCC
Confidence 011136799999999999999999861 38999999999 99999996
|
The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph |
| >cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-25 Score=240.60 Aligned_cols=236 Identities=14% Similarity=0.152 Sum_probs=172.8
Q ss_pred hHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCccccccCCCHHHHhccCccc
Q 003550 424 TNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQI 503 (811)
Q Consensus 424 Tl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~dlT~~ELk~L~~~~ 503 (811)
...+|..|.+.|||+||+|||+||||+|||+||.++.++ + +.+ .+.++||+||+.++.+.
T Consensus 17 ~~~sfvtAsslgad~VE~DVqLTkDgvpVV~HD~~i~~t-~------------------~~~-~V~dlTleqL~~l~~~~ 76 (300)
T cd08578 17 DGNSFVTASSLSGEYLRVKVCVLKDGTPVVAPEWFVPVG-G------------------IKL-LVSDLTAEQLESILDYS 76 (300)
T ss_pred CchhHHHHHHcCCCEEEEEEEECcCCEEEEECCCceEec-C------------------CcE-EeecCcHHHHhccCCcc
Confidence 467999999999999999999999999999999999774 4 334 79999999999999875
Q ss_pred cCCcccccccCC---cCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhc-------C---ccHHHHHHHHHH
Q 003550 504 SNPYFKFKLFRN---PKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQ-------G---MSVTNSVMEALG 570 (811)
Q Consensus 504 ~~p~~~~~~~rn---~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~-------g---~~~~~~v~~~L~ 570 (811)
+... ....... ..+.+ .++|||+|+|+.+... ++++||||.|...+... . ..+++.+++.+-
T Consensus 77 ~~~~-~~~~~~~~~~~~~~~-~~~pTL~evL~~lp~~---iglNIEIK~P~~~e~~~~~~~~~~~~d~N~fvD~IL~~Vf 151 (300)
T cd08578 77 LDDL-NSEISDMVDLKRLLS-SRVVSLETLLELLPPS---IQLDIQVLFPTAAEIASIPVKGSPLVDLNKFIDTVLLVVF 151 (300)
T ss_pred cccc-cccccccchhhhhcC-CcCCCHHHHHHhhccC---CeEEEEECCCChHHhhhccccccchhHHHHHHHHHHHHHH
Confidence 4210 0000000 11222 6899999999999664 79999999988754211 0 136677777776
Q ss_pred hcCC-C---CCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccc--------------------------cchhchHhH
Q 003550 571 NAGY-N---KQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKEN--------------------------IRDALNQTI 619 (811)
Q Consensus 571 ~~g~-~---~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~--------------------------~~d~~~~~l 619 (811)
++.. . ....++|+|+||||++|..++.+ |+||+.|+++.. ..|....++
T Consensus 152 ~har~~~~~~~~~R~IiFSSf~pdiC~~L~~KQp~yPV~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~Si 231 (300)
T cd08578 152 DHARYLRHTPGSTRSIVFSSCNPEVCTILNWKQPNFPVFFAMNGLVRNNDTLSFDTPHHLDSLAVDPQKLNEADPRSRSI 231 (300)
T ss_pred HHhhhhcccCCCCCceEEeeCCHHHHHHHHhcCCCCCEEEEecCCccccccccccccccccccccccccccccCchhhhH
Confidence 5531 1 11237999999999999999998 999999998764 234455678
Q ss_pred HHHHHhhhhhccccceeecCCccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEe
Q 003550 620 EDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVIT 699 (811)
Q Consensus 620 ~~i~~~a~~v~~~~~~i~p~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiT 699 (811)
++...||..-++- .++.. ...|...+.+|+.+|++||.+.+|+-.++. ......+.||||++.
T Consensus 232 ~~Av~fA~~~nL~--Giv~~-~~~L~~~P~lV~~ik~~GL~lv~~g~~~~~--------------~~~~~~~~~vnG~~~ 294 (300)
T cd08578 232 KEAVRFAKNNNLL--GLILP-YSLLNIVPQLVESIKSRGLLLIASGEPESL--------------IEVAEAGDGINGVVT 294 (300)
T ss_pred HHHHHHHHHcCCc--EEEec-HHHHhhChHHHHHHHHcCCEEEEECCCCcc--------------ccccccccCCceEEe
Confidence 8888888776662 22222 223556789999999999999999976421 222334789999998
Q ss_pred CC
Q 003550 700 EF 701 (811)
Q Consensus 700 D~ 701 (811)
|.
T Consensus 295 ~~ 296 (300)
T cd08578 295 ED 296 (300)
T ss_pred CC
Confidence 85
|
This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos |
| >cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-21 Score=206.51 Aligned_cols=227 Identities=15% Similarity=0.124 Sum_probs=157.3
Q ss_pred HHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCcccccccCHHhhccccc
Q 003550 108 SSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIIL 187 (811)
Q Consensus 108 Tl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~v~d~t~~eL~~l~~ 187 (811)
+..+|..|.++|+| +||+|||+||||++||+||.+++++ ++.+ .+.|+|++||+.++.
T Consensus 17 ~~~sfvtAsslgad--~VE~DVqLTkDgvpVV~HD~~i~~t-~~~~-------------------~V~dlTleqL~~l~~ 74 (300)
T cd08578 17 DGNSFVTASSLSGE--YLRVKVCVLKDGTPVVAPEWFVPVG-GIKL-------------------LVSDLTAEQLESILD 74 (300)
T ss_pred CchhHHHHHHcCCC--EEEEEEEECcCCEEEEECCCceEec-CCcE-------------------EeecCcHHHHhccCC
Confidence 56799999999999 9999999999999999999999764 4443 799999999999987
Q ss_pred cccccCCC--------CCCCCCCcccccHHHHHHhhCC-CceEEeeccchhhhhcC-----------chHHHHHHHHhhh
Q 003550 188 NQGVYSRT--------DKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHN-----------LSMRSFVLSVSRS 247 (811)
Q Consensus 188 ~~~~~~~~--------~~~~~~~~~iptL~evl~~~~~-~~l~leiK~~~~~~~~~-----------~~~~~~l~~~lk~ 247 (811)
..+..... ..+.+ .++|||+|+|+.+++ .+++||||+|..+.... ..+++.+++.+-+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~--~~~pTL~evL~~lp~~iglNIEIK~P~~~e~~~~~~~~~~~~d~N~fvD~IL~~Vf~ 152 (300)
T cd08578 75 YSLDDLNSEISDMVDLKRLLS--SRVVSLETLLELLPPSIQLDIQVLFPTAAEIASIPVKGSPLVDLNKFIDTVLLVVFD 152 (300)
T ss_pred cccccccccccccchhhhhcC--CcCCCHHHHHHhhccCCeEEEEECCCChHHhhhccccccchhHHHHHHHHHHHHHHH
Confidence 65432100 11223 689999999999865 68999999988653211 1345556665543
Q ss_pred c-----------CceEEecCCHHHHHHHHHhcCCCCcceeeeecCCCcc-C---C------------CcccchHHHhh-h
Q 003550 248 V-----------VVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEI-E---P------------TTNQTYGSLLK-N 299 (811)
Q Consensus 248 ~-----------~~~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~-~---~------------~~~~~y~~l~~-~ 299 (811)
+ .-.++|||++++|..|+-+.| ++|+.|+..+...- . . .....|.+... .
T Consensus 153 har~~~~~~~~~R~IiFSSf~pdiC~~L~~KQp--~yPV~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~S 230 (300)
T cd08578 153 HARYLRHTPGSTRSIVFSSCNPEVCTILNWKQP--NFPVFFAMNGLVRNNDTLSFDTPHHLDSLAVDPQKLNEADPRSRS 230 (300)
T ss_pred HhhhhcccCCCCCceEEeeCCHHHHHHHHhcCC--CCCEEEEecCCccccccccccccccccccccccccccccCchhhh
Confidence 3 225999999999999999998 78998754433210 0 0 00113445444 4
Q ss_pred HHHHHhhcc-----cccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCC
Q 003550 300 LTFIKTFAS-----GILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGD 374 (811)
Q Consensus 300 L~~i~~~a~-----gi~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~ 374 (811)
+++...||. |+..+.+. |...+.+|+.++++||-+++|+-.+. ..+ ....+.|
T Consensus 231 i~~Av~fA~~~nL~Giv~~~~~---------L~~~P~lV~~ik~~GL~lv~~g~~~~-----------~~~-~~~~~~~- 288 (300)
T cd08578 231 IKEAVRFAKNNNLLGLILPYSL---------LNIVPQLVESIKSRGLLLIASGEPES-----------LIE-VAEAGDG- 288 (300)
T ss_pred HHHHHHHHHHcCCcEEEecHHH---------HhhChHHHHHHHHcCCEEEEECCCCc-----------ccc-ccccccC-
Confidence 555555554 44443332 33447899999999999999996421 011 1124446
Q ss_pred CccCeEeccC
Q 003550 375 FSVDGVLSDF 384 (811)
Q Consensus 375 ~~VDgIiTD~ 384 (811)
|||++.|.
T Consensus 289 --vnG~~~~~ 296 (300)
T cd08578 289 --INGVVTED 296 (300)
T ss_pred --CceEEeCC
Confidence 99999875
|
This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos |
| >KOG2258 consensus Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-21 Score=211.80 Aligned_cols=254 Identities=21% Similarity=0.251 Sum_probs=187.7
Q ss_pred CCEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCC
Q 003550 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (811)
Q Consensus 91 ~plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~ 170 (811)
...||+|||++|.+||||++||++|++.|+| .+|||||+|+||+.|++||.+.+|++++..
T Consensus 68 ~~~i~~~rga~g~~penT~~A~~~a~~~Gad--~ie~dV~~TsDg~~v~l~d~~~~r~~~v~~----------------- 128 (341)
T KOG2258|consen 68 GWLIIAHRGASGDAPENTLAAYKKAIADGAD--LIELDVQMTSDGVPVILHDSTTVRVTGVPE----------------- 128 (341)
T ss_pred CceeEeccCCCCCCCcccHHHHHHHHHcCCc--EEEeccccCCCCceEEeecCcceeeeccee-----------------
Confidence 6889999999999999999999999999999 999999999999999999999999998775
Q ss_pred cccccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCCC--ceEEeeccchhhhhcCchHHHHHHHHhhhc
Q 003550 171 GWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPP--GLWLNIQHDAFYAQHNLSMRSFVLSVSRSV 248 (811)
Q Consensus 171 g~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~--~l~leiK~~~~~~~~~~~~~~~l~~~lk~~ 248 (811)
.+.++||.|++++..........+.+. .+++|+|+|..+.+-.. .++-|.| +.+.+.+++.+++.
T Consensus 129 --~~~~lt~~e~~~l~~~~~~~~~~~~~~--~~~~~~l~e~v~~~~~~n~~~l~d~~---------~~~~~~vl~~l~~~ 195 (341)
T KOG2258|consen 129 --IVFDLTWMELRKLGPKIENPFAGPIIT--LEKLLTLAEAVASVVGNNVAMLNDVK---------LLVVDKVLEALKNA 195 (341)
T ss_pred --eeccCCHHHHhccCccccCcccccccc--hhhhccHHHHHHHHHcCChhhhhhhh---------hhhHHHHHHHHHHH
Confidence 578999999999987765433111111 36899999999987543 2222333 35666777777665
Q ss_pred Cc-------eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCcccccCC
Q 003550 249 VV-------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVD 321 (811)
Q Consensus 249 ~~-------~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~~i~~~~ 321 (811)
+. ..+|||++-.+.++++..+ ...+.. .+.. ....+...++.++.++..++..+.+..
T Consensus 196 ~~~~~~~~kv~v~s~~~~~l~~~~~~~~--~~~i~~-~~~~------------~~ls~~~dik~~~~~~~~~~~~~~~~~ 260 (341)
T KOG2258|consen 196 TSDFSLYDKVLVQSFNPIVLYRLKKLDP--FILIGD-TWRF------------TFLSGIEDIKKRAFAVVSSKLAIFPVS 260 (341)
T ss_pred hcCCCccceEEEEecCcHHHHHhccCCc--eEEecc-eecc------------hhhccchhhhcccceeeechHHHHHHH
Confidence 43 4999999999999998765 211111 0100 011123456777778877777776653
Q ss_pred CcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcchhhh
Q 003550 322 ESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVD 393 (811)
Q Consensus 322 ~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~~~~~ 393 (811)
....+.....++...++.++.|+.+.++++....++|+.|+.-++..++.+ ..++|..||++-++-++.+
T Consensus 261 ~~~~~~~~~~v~~~~~~~~~~v~~~~~~~e~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~ 330 (341)
T KOG2258|consen 261 DSLVLAITKNVVAPLQKLNLVVYVEVFNNEVVLAVDFSAAPTIELAGWITN--VGIDGYITDFHLTAPRLTD 330 (341)
T ss_pred HHHhhhhhcceeeehhcCCcEEEEEEeeccceeeccccccCceEeeeeecc--ccccCceeeccchhhHhhc
Confidence 222223333789999999999999999999778888887887666666652 3488899999888776654
|
|
| >cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-19 Score=176.75 Aligned_cols=186 Identities=15% Similarity=0.138 Sum_probs=126.9
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccccc
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~ 489 (811)
|||||| ||++||++|++. |+||+|||+| ||++||+||.+++
T Consensus 1 IiAHRG-------NTl~AF~~A~~~--dgvE~DVr~t-Dg~lVV~HD~~l~----------------------------- 41 (192)
T cd08584 1 IIAHRG-------NTITALKRTFEN--FGVETDIRDY-GGQLVISHDPFVK----------------------------- 41 (192)
T ss_pred CCccch-------HHHHHHHHHHHC--CEEEEEEEee-CCeEEEECCCCCC-----------------------------
Confidence 689999 999999999998 9999999999 9999999996542
Q ss_pred CCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHH
Q 003550 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (811)
Q Consensus 490 dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L 569 (811)
++|||+|+|+++++. .++||||.+ .+++++.+++
T Consensus 42 ---------------------------------~~PtLeEvL~~~~~~----~l~inIK~~---------~l~~~l~~li 75 (192)
T cd08584 42 ---------------------------------NGELLEDWLKEYNHG----TLILNIKAE---------GLELRLKKLL 75 (192)
T ss_pred ---------------------------------CCCCHHHHHHhcccc----cEEEEECch---------hHHHHHHHHH
Confidence 259999999999754 589999943 2677899999
Q ss_pred HhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccCCCH
Q 003550 570 GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648 (811)
Q Consensus 570 ~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~ 648 (811)
++++.. ++++|+||++..+.+++.- +++-+..--.+. .+..+.- ..-++ ++|.+.. ...-.+.
T Consensus 76 ~~~~~~----~~vi~ssf~~~~l~~~~~~~~~i~tr~Se~E~----~~~~~~~-~~~~~--~VW~D~f-----~~~~~~~ 139 (192)
T cd08584 76 AEYGIT----NYFFLDMSVPDIIKYLENGEKRTATRVSEYEP----IPTALSL-YEKAD--WVWIDSF-----TSLWLDN 139 (192)
T ss_pred HhcCCc----ceEEEEcCCHHHHHHHhcCCCeeEEeeccccc----chHHHHh-hcccc--EEEEecc-----cccCCCH
Confidence 999987 7999999999999999986 444333221111 1111100 11111 2332221 1123467
Q ss_pred HHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHH--HHH--hcCCCEEEeCChHH
Q 003550 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINT--YYE--GAGIDGVITEFPMT 704 (811)
Q Consensus 649 ~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~--~l~--~~GVDGIiTD~P~~ 704 (811)
+.++++.++|.++..= ..|-.. -|| ..++.. ++. +.--++|+||+|..
T Consensus 140 ~~~~~~~~~~~~~c~V--SpELh~--~~~----~~~~~~~~~~~~~~~~~~~~CT~~p~~ 191 (192)
T cd08584 140 DLILKLLKAGKKICLV--SPELHG--RDH----LAEWEAKQYIEFLKENFDALCTKVPDL 191 (192)
T ss_pred HHHHHHHHCCcEEEEE--CHHHcC--CCh----HHHHHHHHhhhhccccCeeEeccCccc
Confidence 8999999999998543 333211 111 123332 221 12368999999975
|
This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues. |
| >cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-17 Score=165.35 Aligned_cols=187 Identities=14% Similarity=0.118 Sum_probs=124.4
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCccc
Q 003550 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (811)
Q Consensus 94 viaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~ 173 (811)
|||||| ||+.||+.|++. + ++|+|||+| ||++||+||.+++
T Consensus 1 IiAHRG-------NTl~AF~~A~~~--d--gvE~DVr~t-Dg~lVV~HD~~l~--------------------------- 41 (192)
T cd08584 1 IIAHRG-------NTITALKRTFEN--F--GVETDIRDY-GGQLVISHDPFVK--------------------------- 41 (192)
T ss_pred CCccch-------HHHHHHHHHHHC--C--EEEEEEEee-CCeEEEECCCCCC---------------------------
Confidence 589999 999999999999 7 999999999 9999999999772
Q ss_pred ccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCCCceEEeeccchhhhhcCchHHHHHHHHhhhcCc---
Q 003550 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV--- 250 (811)
Q Consensus 174 v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~~--- 250 (811)
++|||+|+|++++...+.||||.+ .++..+.++++++++
T Consensus 42 ------------------------------~~PtLeEvL~~~~~~~l~inIK~~--------~l~~~l~~li~~~~~~~~ 83 (192)
T cd08584 42 ------------------------------NGELLEDWLKEYNHGTLILNIKAE--------GLELRLKKLLAEYGITNY 83 (192)
T ss_pred ------------------------------CCCCHHHHHHhcccccEEEEECch--------hHHHHHHHHHHhcCCcce
Confidence 459999999999887799999943 367889999999876
Q ss_pred eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCcccccCCCcccCCCCh
Q 003550 251 NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHT 330 (811)
Q Consensus 251 ~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~~i~~~~~~~~l~~~~ 330 (811)
.+++||++..+++++...+ ++..+. +..|+. . ..-.+...+.|+-++..+- .-.+.
T Consensus 84 vi~ssf~~~~l~~~~~~~~----~i~tr~---Se~E~~--~-------~~~~~~~~~~~VW~D~f~~--------~~~~~ 139 (192)
T cd08584 84 FFLDMSVPDIIKYLENGEK----RTATRV---SEYEPI--P-------TALSLYEKADWVWIDSFTS--------LWLDN 139 (192)
T ss_pred EEEEcCCHHHHHHHhcCCC----eeEEee---cccccc--h-------HHHHhhccccEEEEecccc--------cCCCH
Confidence 3899999999999977542 122211 222210 0 0001122355543332211 12236
Q ss_pred HHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHH--HHHcCCCccCeEeccCCCCc
Q 003550 331 TIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLS--FIDNGDFSVDGVLSDFPLTP 388 (811)
Q Consensus 331 ~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~--~i~~G~~~VDgIiTD~P~~a 388 (811)
+.++...++|.+|..= ..|. ++-|-.++++. .+....-.-+.|.||+|..+
T Consensus 140 ~~~~~~~~~~~~~c~V--SpEL-----h~~~~~~~~~~~~~~~~~~~~~~~~CT~~p~~~ 192 (192)
T cd08584 140 DLILKLLKAGKKICLV--SPEL-----HGRDHLAEWEAKQYIEFLKENFDALCTKVPDLW 192 (192)
T ss_pred HHHHHHHHCCcEEEEE--CHHH-----cCCChHHHHHHHHhhhhccccCeeEeccCcccC
Confidence 7889999999998652 2220 01111133332 12211011589999999864
|
This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues. |
| >cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.4e-11 Score=123.70 Aligned_cols=213 Identities=15% Similarity=0.121 Sum_probs=123.4
Q ss_pred ecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCccccccC
Q 003550 411 ISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFS 490 (811)
Q Consensus 411 IAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~d 490 (811)
-+|+=+.-..| +..|++.||++||.||+++ ||+++|.||..+.+... -+.+
T Consensus 4 hsHNDY~r~~P------l~~Al~~g~~svEaDV~l~-dg~l~V~Hd~~~l~~~~----------------------tl~~ 54 (228)
T cd08577 4 HSHNDYWRKRP------LYDALSAGFGSIEADVWLV-NGDLLVAHDEVDLSPAR----------------------TLES 54 (228)
T ss_pred ccccccccccc------hHHHHHcCCCEEEEeEEEE-CCEEEEEcChhHcCccC----------------------CHHH
Confidence 46665555444 6779999999999999999 99999999988877521 4789
Q ss_pred CCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHH
Q 003550 491 LIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALG 570 (811)
Q Consensus 491 lT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~ 570 (811)
+++++|.++..... +.+. ........++||||...... ..++..+++.++
T Consensus 55 Lyl~pL~~~l~~~n-----------~~~~---------------~~~~~~l~LlIDiKt~g~~t----~~~l~~~L~~~~ 104 (228)
T cd08577 55 LYLDPLLEILDQNN-----------GQAY---------------NDPEQPLQLLIDIKTDGEST----YPALEEVLKPYI 104 (228)
T ss_pred HhHHHHHHHHHHcC-----------CCCC---------------CCCCCceEEEEEECCCChHH----HHHHHHHHHHHH
Confidence 99999987543321 1110 22212368999999654321 135667788888
Q ss_pred hcCCCCC------CCcEEEEEeCChHHHHHHHhccCceEEEEEccccc-hhchHhHHHHH-----Hhhhhhccccceeec
Q 003550 571 NAGYNKQ------TALKVMIQSTDSSVLMKLREKTSYELVYKVKENIR-DALNQTIEDIK-----KFADSVVLSKESVYP 638 (811)
Q Consensus 571 ~~g~~~~------~~~~ViiqSfd~~~L~~lk~~p~~~~~~l~~~~~~-d~~~~~l~~i~-----~~a~~v~~~~~~i~p 638 (811)
+.++... +.=.|+++.--|..+.. ...+.-+.++.... +........+. .|...++.+....++
T Consensus 105 ~~~~~~~~~~~~~~pvtvV~tGn~p~~~~~----~~~~r~~f~D~~l~~~~~~~~~~~~~~~~S~~~~~~~~~~~~g~~~ 180 (228)
T cd08577 105 DIGYLSYYDKLVPGPVTVVITGNRPKEEVK----SQYPRYIFFDGRLDEDLPDEQLARLSPMISASFAKFSKWNGKGDTP 180 (228)
T ss_pred hcCceeecCcEEecCeEEEEeCCCChhhhc----cccCCeEEEeCChhhccccccccccceEEEccHHHhcCCCCCCCCC
Confidence 8777632 11135666655544422 12222223333221 11110000110 111111111000011
Q ss_pred CCccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCC
Q 003550 639 LNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (811)
Q Consensus 639 ~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~ 701 (811)
...+..-.++|+.+|++|+++.+||+++.. ..+..++ ++|||+|+||.
T Consensus 181 --~~q~~~l~~~v~~a~~~Gl~vr~Wtv~~~~------------~~~~~l~-~~GVd~I~TDd 228 (228)
T cd08577 181 --EDEKEKLKSIIDKAHARGKKVRFWGTPDRP------------NVWKTLM-ELGVDLLNTDD 228 (228)
T ss_pred --HHHHHHHHHHHHHHHHCCCEEEEEccCChH------------HHHHHHH-HhCCCEEecCC
Confidence 011112246899999999999999997631 2366665 99999999995
|
This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues. |
| >cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.9e-10 Score=116.59 Aligned_cols=222 Identities=16% Similarity=0.219 Sum_probs=131.0
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcE-EEeecCccccccccCCCcCCCccccccccccCccccc
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVP-FCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFS 488 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~-Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v 488 (811)
+|||| =||+.....|+..||..||+||...++|.+ ..+||.--+-- .| ..
T Consensus 2 ~iaHm-------Vn~~~~v~~~l~~GANaiE~Dv~f~~~~~~~~~~Hg~pcdc~---------------------r~-c~ 52 (265)
T cd08576 2 AIAHM-------VNDLEGVDDALDHGANAIEIDVTFWSNGTGWWADHDVPCDCF---------------------RG-CT 52 (265)
T ss_pred cchhh-------hccHHHHHHHHHcCCCceeEEEEEccCCcEEEeeCCCccccc---------------------cC-Cc
Confidence 46776 599999999999999999999999999998 77888422210 00 11
Q ss_pred cCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcC------CCceEEEEecchhHHHhh---cCc
Q 003550 489 FSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNAN------SLSGVLISIENAVYLAEK---QGM 559 (811)
Q Consensus 489 ~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~------~~~gi~IEiK~~~~~~~~---~g~ 559 (811)
..-- +.++|+..++.. ..+-+.+++|.+....+. .|.
T Consensus 53 ~~~~----------------------------------f~~~l~~~r~~ttpg~~~~l~lv~lDlK~~~~~~~~~~~ag~ 98 (265)
T cd08576 53 AREM----------------------------------FDEILDYRRNGTTPGFRENLIFVWLDLKNPDLCGECSINAGR 98 (265)
T ss_pred HHHH----------------------------------HHHHHHHHHhcCCCCccceeEEEEEEcCCCCcCHHHHHHHHH
Confidence 1111 122222222221 235789999987654322 222
Q ss_pred cHHHHHHHHHHhcCCCCCCCcEEE--EEeC---ChHHHHHHHhc-cCceEE-EEEccccchhc-hHhHHHHHHhhhhhcc
Q 003550 560 SVTNSVMEALGNAGYNKQTALKVM--IQST---DSSVLMKLREK-TSYELV-YKVKENIRDAL-NQTIEDIKKFADSVVL 631 (811)
Q Consensus 560 ~~~~~v~~~L~~~g~~~~~~~~Vi--iqSf---d~~~L~~lk~~-p~~~~~-~l~~~~~~d~~-~~~l~~i~~~a~~v~~ 631 (811)
++.+ ++|+.++-.. ...|++ ++-. +...++.+++. .+-.-. =+.+..-.|.+ .+.+.++.+..+..+
T Consensus 99 ~la~---~ll~~~w~~~-~~~ra~~~~s~~~~~~~~~~~~~~~~l~~~~~~~~~~~kvg~df~~n~~l~~~~~~~~~~~- 173 (265)
T cd08576 99 DLAR---KLLEPYWNGG-SGARALYGFSIPSITDSRFFKGIRDRLNSEEAVSGLLDKVGKDFSGNEDLEDIRRVYDYGG- 173 (265)
T ss_pred HHHH---HHHHHhhcCC-CCeEEEEEEEeccccchHHHHHHHHHHHhcCchhhHHHhhcccccCCCChHHHHHHHHhcC-
Confidence 3333 3344443221 113443 3332 46677777765 221111 00011001111 123666666656553
Q ss_pred ccceeecCC---ccc--cCCCHHHHHHHHHcCC-----cEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCC
Q 003550 632 SKESVYPLN---SAF--ITSATDIVQRLQSFKL-----PVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (811)
Q Consensus 632 ~~~~i~p~~---~~~--l~~~~~~V~~~~~~Gl-----~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~ 701 (811)
.. .++... .-. ....+++++.+|++|. +|++||+|++. ++..++ ++||||||||+
T Consensus 174 ~~-h~w~~dGitnC~~~~~~~~~lv~~~~~rd~~g~i~kV~vWTVn~~~-------------~~~~ll-~~GVDGIITD~ 238 (265)
T cd08576 174 DG-HIWQSDGITNCLEKYRTCARLREAIKKRDTPGYLGKVYGWTSDKGS-------------SVRKLL-RLGVDGIITNY 238 (265)
T ss_pred cC-ceecCCCcccccccccccHHHHHHHHHcCCCCcCCeEEEEeCCCHH-------------HHHHHH-hcCCCEEEECC
Confidence 21 222111 011 2457899999999999 99999999874 577777 99999999999
Q ss_pred hHHHHHHHHhccc
Q 003550 702 PMTAARYRRNRCL 714 (811)
Q Consensus 702 P~~~~~~~~~~~~ 714 (811)
|+.+.+++++...
T Consensus 239 P~~i~~~l~~~~~ 251 (265)
T cd08576 239 PKRIIDVLKESEF 251 (265)
T ss_pred HHHHHHHHHhccc
Confidence 9999998876654
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline |
| >cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-09 Score=113.27 Aligned_cols=196 Identities=14% Similarity=0.030 Sum_probs=107.7
Q ss_pred HHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCcccccccCHHhhccccccccc
Q 003550 112 YSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGV 191 (811)
Q Consensus 112 ~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~v~d~t~~eL~~l~~~~~~ 191 (811)
+..|++.|++ +||.|||++ ||+++|.||.++.+. .. .+.++++++|.++--.++
T Consensus 15 l~~Al~~g~~--svEaDV~l~-dg~l~V~Hd~~~l~~---~~-------------------tl~~Lyl~pL~~~l~~~n- 68 (228)
T cd08577 15 LYDALSAGFG--SIEADVWLV-NGDLLVAHDEVDLSP---AR-------------------TLESLYLDPLLEILDQNN- 68 (228)
T ss_pred hHHHHHcCCC--EEEEeEEEE-CCEEEEEcChhHcCc---cC-------------------CHHHHhHHHHHHHHHHcC-
Confidence 6779999999 999999999 999999999988655 11 478999999987443321
Q ss_pred cCCCCCCCCCCcccccHHHHHHhhC-CCceEEeeccchhhhhcCchHHHHHHHHhhhcCce-------------EEecCC
Q 003550 192 YSRTDKFDGNGFQILTVQDMARQIK-PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVN-------------YISSPE 257 (811)
Q Consensus 192 ~~~~~~~~~~~~~iptL~evl~~~~-~~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~~~-------------~isSf~ 257 (811)
+ ... ...+ ...|+||||.+... ...+...+++.+++.+.. +++.-.
T Consensus 69 --------~-~~~--------~~~~~~l~LlIDiKt~g~~---t~~~l~~~L~~~~~~~~~~~~~~~~~~pvtvV~tGn~ 128 (228)
T cd08577 69 --------G-QAY--------NDPEQPLQLLIDIKTDGES---TYPALEEVLKPYIDIGYLSYYDKLVPGPVTVVITGNR 128 (228)
T ss_pred --------C-CCC--------CCCCCceEEEEEECCCChH---HHHHHHHHHHHHHhcCceeecCcEEecCeEEEEeCCC
Confidence 1 011 1111 24689999976421 123444555555554431 222211
Q ss_pred HHHHHHHHHhcCCCCcceeeeecCCCcc-CCCcccchHH--Hhh-hHHHHHhhcccccCCCcccccCCCcccCCCChHHH
Q 003550 258 VNFLRSIAARFRPSMTKLVFRFLGKSEI-EPTTNQTYGS--LLK-NLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIV 333 (811)
Q Consensus 258 ~~~L~~l~~~~~~~~~~lv~~~~~~~~~-~~~~~~~y~~--l~~-~L~~i~~~a~gi~~~~~~i~~~~~~~~l~~~~~~V 333 (811)
+--+ +... ....+ |++.... ....+..+.. +.+ ++... ++....-..+. .-+..=.++|
T Consensus 129 p~~~--~~~~----~~r~~--f~D~~l~~~~~~~~~~~~~~~~S~~~~~~------~~~~~~g~~~~---~q~~~l~~~v 191 (228)
T cd08577 129 PKEE--VKSQ----YPRYI--FFDGRLDEDLPDEQLARLSPMISASFAKF------SKWNGKGDTPE---DEKEKLKSII 191 (228)
T ss_pred Chhh--hccc----cCCeE--EEeCChhhccccccccccceEEEccHHHh------cCCCCCCCCCH---HHHHHHHHHH
Confidence 1111 1111 11222 3333221 1111111110 011 11111 11000000000 0000014689
Q ss_pred HHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccC
Q 003550 334 LDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDF 384 (811)
Q Consensus 334 ~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~ 384 (811)
+.||+.|+++.+||++++ .+.++.+++.| ||+|+||.
T Consensus 192 ~~a~~~Gl~vr~Wtv~~~-----------~~~~~~l~~~G---Vd~I~TDd 228 (228)
T cd08577 192 DKAHARGKKVRFWGTPDR-----------PNVWKTLMELG---VDLLNTDD 228 (228)
T ss_pred HHHHHCCCEEEEEccCCh-----------HHHHHHHHHhC---CCEEecCC
Confidence 999999999999998752 37899999999 99999994
|
This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues. |
| >cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.6e-09 Score=110.86 Aligned_cols=223 Identities=16% Similarity=0.162 Sum_probs=123.8
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcE-EEecCCCCCCCcchhhhhcccccccccCCCCCCcc
Q 003550 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAG-ICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGW 172 (811)
Q Consensus 94 viaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~-v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~ 172 (811)
+|||| =|++..+..|+..||. .||+||...++|.+ ..+||...+.--+... |
T Consensus 2 ~iaHm-------Vn~~~~v~~~l~~GAN--aiE~Dv~f~~~~~~~~~~Hg~pcdc~r~c~~------------------~ 54 (265)
T cd08576 2 AIAHM-------VNDLEGVDDALDHGAN--AIEIDVTFWSNGTGWWADHDVPCDCFRGCTA------------------R 54 (265)
T ss_pred cchhh-------hccHHHHHHHHHcCCC--ceeEEEEEccCCcEEEeeCCCccccccCCcH------------------H
Confidence 46775 3999999999999999 99999999999987 6788875542101000 0
Q ss_pred cccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--CceEEeeccchhhhhcCch-HHHHHHHHhhhcC
Q 003550 173 FSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNLS-MRSFVLSVSRSVV 249 (811)
Q Consensus 173 ~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~--~~l~leiK~~~~~~~~~~~-~~~~l~~~lk~~~ 249 (811)
-..+-=++++++++. |- ++. .-+|+++|.+.+..+.... ..+...++++.+.
T Consensus 55 ~~f~~~l~~~r~~tt------------------pg-------~~~~l~lv~lDlK~~~~~~~~~~~ag~~la~~ll~~~w 109 (265)
T cd08576 55 EMFDEILDYRRNGTT------------------PG-------FRENLIFVWLDLKNPDLCGECSINAGRDLARKLLEPYW 109 (265)
T ss_pred HHHHHHHHHHHhcCC------------------CC-------ccceeEEEEEEcCCCCcCHHHHHHHHHHHHHHHHHHhh
Confidence 011111222222211 11 111 3589999988876543211 1122233444443
Q ss_pred -----ce---EEecC---CHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCcccc
Q 003550 250 -----VN---YISSP---EVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIW 318 (811)
Q Consensus 250 -----~~---~isSf---~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~~i~ 318 (811)
.. .+|-+ +..+++.++........ +--.++.-..+-+.+.. |..+++.....+ ..++|
T Consensus 110 ~~~~~~ra~~~~s~~~~~~~~~~~~~~~~l~~~~~--~~~~~~kvg~df~~n~~-------l~~~~~~~~~~~--~~h~w 178 (265)
T cd08576 110 NGGSGARALYGFSIPSITDSRFFKGIRDRLNSEEA--VSGLLDKVGKDFSGNED-------LEDIRRVYDYGG--DGHIW 178 (265)
T ss_pred cCCCCeEEEEEEEeccccchHHHHHHHHHHHhcCc--hhhHHHhhcccccCCCC-------hHHHHHHHHhcC--cCcee
Confidence 21 22222 35777777776542111 10000100001111111 223333222222 12333
Q ss_pred cCCC-ccc---CCCChHHHHHHHHcCC-----eEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcc
Q 003550 319 PVDE-SLY---LLPHTTIVLDAHKERL-----EVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPS 389 (811)
Q Consensus 319 ~~~~-~~~---l~~~~~~V~~ah~~Gl-----~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~ 389 (811)
..+- .+- ......+++.+|++|. +|++||++.. ++++++++.| |||||||+|+.+.
T Consensus 179 ~~dGitnC~~~~~~~~~lv~~~~~rd~~g~i~kV~vWTVn~~------------~~~~~ll~~G---VDGIITD~P~~i~ 243 (265)
T cd08576 179 QSDGITNCLEKYRTCARLREAIKKRDTPGYLGKVYGWTSDKG------------SSVRKLLRLG---VDGIITNYPKRII 243 (265)
T ss_pred cCCCcccccccccccHHHHHHHHHcCCCCcCCeEEEEeCCCH------------HHHHHHHhcC---CCEEEECCHHHHH
Confidence 2210 000 1234789999999999 9999999864 8999999999 9999999998877
Q ss_pred hhhhh
Q 003550 390 AAVDC 394 (811)
Q Consensus 390 ~~~~~ 394 (811)
+.++.
T Consensus 244 ~~l~~ 248 (265)
T cd08576 244 DVLKE 248 (265)
T ss_pred HHHHh
Confidence 76654
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline |
| >PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.7e-06 Score=59.62 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=22.0
Q ss_pred cEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChH
Q 003550 660 PVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPM 703 (811)
Q Consensus 660 ~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~ 703 (811)
+|+.||++++. .+..++ ++|||||+||+|+
T Consensus 1 kV~~WT~d~~~-------------~~~~~l-~~GVDgI~Td~p~ 30 (30)
T PF13653_consen 1 KVYFWTPDKPA-------------SWRELL-DLGVDGIMTDYPD 30 (30)
T ss_dssp EEEEET--SHH-------------HHHHHH-HHT-SEEEES-HH
T ss_pred CeEEecCCCHH-------------HHHHHH-HcCCCEeeCCCCC
Confidence 58999998874 477777 9999999999995
|
|
| >PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.7e-06 Score=58.97 Aligned_cols=30 Identities=27% Similarity=0.579 Sum_probs=23.3
Q ss_pred eEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCC
Q 003550 342 EVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPL 386 (811)
Q Consensus 342 ~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~ 386 (811)
+|++||++++ +.++.+++.| ||||+||+|+
T Consensus 1 kV~~WT~d~~------------~~~~~~l~~G---VDgI~Td~p~ 30 (30)
T PF13653_consen 1 KVYFWTPDKP------------ASWRELLDLG---VDGIMTDYPD 30 (30)
T ss_dssp EEEEET--SH------------HHHHHHHHHT----SEEEES-HH
T ss_pred CeEEecCCCH------------HHHHHHHHcC---CCEeeCCCCC
Confidence 6899998764 8999999999 9999999984
|
|
| >cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.2e-05 Score=83.32 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=45.3
Q ss_pred ceeecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccc
Q 003550 408 LLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (811)
Q Consensus 408 plIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~ 460 (811)
.+--+|+-+ .-..+|||+.||++|++.|+++||+||+-++||+|||+|+.++.
T Consensus 12 fI~SSHNTYL~g~Ql~~ess~eay~~AL~~GcR~vElDvwdg~dgePvV~HG~tlt 67 (229)
T cd08592 12 WIASSHNTYLTGDQLSSESSLEAYARCLRMGCRCIELDCWDGPDGMPIIYHGHTLT 67 (229)
T ss_pred eeeccccccccCCccCCccCHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcCC
Confidence 344567643 34689999999999999999999999999999999999997653
|
This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl |
| >cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1 | Back alignment and domain information |
|---|
Probab=97.72 E-value=3.8e-05 Score=79.40 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=44.8
Q ss_pred eeecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccc
Q 003550 409 LVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (811)
Q Consensus 409 lIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~ 460 (811)
+--+|+-+ .-..+|||+.||.+|++.|+++||+||+-++||+|||+|+.++.
T Consensus 13 I~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcR~vElD~wdg~dgePvV~Hg~tlt 67 (229)
T cd08627 13 ISSSHNTYLTGDQFSSESSLEAYARCLRMGCRCIELDCWDGPDGMPVIYHGHTLT 67 (229)
T ss_pred eecCcCccccCCccCCcccHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcCC
Confidence 44567643 34678999999999999999999999999999999999997663
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw |
| >cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.7e-05 Score=79.01 Aligned_cols=44 Identities=20% Similarity=0.114 Sum_probs=41.4
Q ss_pred CCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCC
Q 003550 101 SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLD 146 (811)
Q Consensus 101 ~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~ 146 (811)
..+.+|||++||+.|+..|++ .||+||+-++||++||+||.++.
T Consensus 24 ~Ql~~ess~eay~~AL~~GcR--~vElDvwdg~dgePvV~HG~tlt 67 (229)
T cd08592 24 DQLSSESSLEAYARCLRMGCR--CIELDCWDGPDGMPIIYHGHTLT 67 (229)
T ss_pred CccCCccCHHHHHHHHHhCCC--EEEEEeecCCCCCEEEEeCCcCC
Confidence 367899999999999999999 99999999999999999999884
|
This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl |
| >KOG2421 consensus Predicted starch-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=1.2e-05 Score=91.26 Aligned_cols=62 Identities=23% Similarity=0.231 Sum_probs=53.8
Q ss_pred ccccccceeecCCCCC-------CCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcccccc
Q 003550 402 ASKSANLLVISKNGAS-------GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINST 463 (811)
Q Consensus 402 ~~~~~~plIIAHRGas-------g~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT 463 (811)
.++++..+-++|||.. ....|||...+..|++.|||++|+|||+|||.++|++||..+...-
T Consensus 319 w~~~~~~l~~g~rg~g~sy~~~~~~~~ent~~~~~~~~~~~ad~ve~dvqlt~D~~~vvyh~f~~~~~~ 387 (417)
T KOG2421|consen 319 WKKNGLSLNTGHRGNGTSYTVLSQVLRENTIVIVDNVLELGADLVEMDVQLTKDLVPVVYHDFVLLVSV 387 (417)
T ss_pred hcccchhhhccCCcCCchhhhhhhhhccceeeeehhHHHhhhhHHHhhcccccCCceeeeccceeEEee
Confidence 4555677889999963 2467999999999999999999999999999999999998887653
|
|
| >cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1 | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00012 Score=75.63 Aligned_cols=43 Identities=19% Similarity=0.092 Sum_probs=40.8
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLD 146 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~ 146 (811)
.+.+|||++||..|+..|++ .||+||+-++||++||+||.++.
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR--~vElD~wdg~dgePvV~Hg~tlt 67 (229)
T cd08627 25 QFSSESSLEAYARCLRMGCR--CIELDCWDGPDGMPVIYHGHTLT 67 (229)
T ss_pred ccCCcccHHHHHHHHHhCCC--EEEEEeecCCCCCEEEEeCCcCC
Confidence 56789999999999999999 99999999999999999999884
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw |
| >cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00053 Score=72.73 Aligned_cols=51 Identities=16% Similarity=0.129 Sum_probs=43.0
Q ss_pred eeecCCCC-C--CCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 409 LVISKNGA-S--GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 409 lIIAHRGa-s--g~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
+--+|+-+ . -..-+.|..+|++|++.|+++||+||+-++||+|||+|+.++
T Consensus 13 I~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcR~vElD~w~g~~gepvV~Hg~tl 66 (260)
T cd08597 13 IASSHNTYLIEDQLRGPSSVEGYVRALQRGCRCVELDCWDGPNGEPVIYHGHTL 66 (260)
T ss_pred hccccCccccCCeecCccCHHHHHHHHHhCCCEEEEEeEcCCCCCEEEEeCCcc
Confidence 34566643 2 256788999999999999999999999999999999999765
|
This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment |
| >smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0049 Score=59.48 Aligned_cols=43 Identities=14% Similarity=0.099 Sum_probs=39.8
Q ss_pred CCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 101 SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 101 ~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
...+.+|+..+|..++..|+. ++|+||+.++||.++++|+.++
T Consensus 23 ~~~~~~~q~~~i~~qL~~GvR--~~dirv~~~~~~~~~v~Hg~~~ 65 (135)
T smart00148 23 KQLWGESSVEGYIQALDHGCR--CVELDCWDGPDGEPVIYHGHTF 65 (135)
T ss_pred ccccCcccHHHHHHHHHhCCC--EEEEEcccCCCCCEEEEECCcc
Confidence 356789999999999999999 9999999999999999999865
|
Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs. |
| >KOG2421 consensus Predicted starch-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.00015 Score=82.32 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=50.4
Q ss_pred CCCEEEEeCCCC-------CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCc
Q 003550 90 DPPFVVARGGFS-------GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNAS 149 (811)
Q Consensus 90 ~~plviaHRG~~-------~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT 149 (811)
+.-+-++|||.. ....|||+..+..|++.|+| ++|+|||+|||.+.|++||..+..+-
T Consensus 323 ~~~l~~g~rg~g~sy~~~~~~~~ent~~~~~~~~~~~ad--~ve~dvqlt~D~~~vvyh~f~~~~~~ 387 (417)
T KOG2421|consen 323 GLSLNTGHRGNGTSYTVLSQVLRENTIVIVDNVLELGAD--LVEMDVQLTKDLVPVVYHDFVLLVSV 387 (417)
T ss_pred chhhhccCCcCCchhhhhhhhhccceeeeehhHHHhhhh--HHHhhcccccCCceeeeccceeEEee
Confidence 345789999964 24579999999999999999 99999999999999999999886543
|
|
| >cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0017 Score=69.01 Aligned_cols=42 Identities=14% Similarity=0.033 Sum_probs=39.6
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+.-+.|+++|+.|+..|++ .||+||+-++||++||+||.++
T Consensus 25 Ql~~~ss~~~y~~aL~~GcR--~vElD~w~g~~gepvV~Hg~tl 66 (260)
T cd08597 25 QLRGPSSVEGYVRALQRGCR--CVELDCWDGPNGEPVIYHGHTL 66 (260)
T ss_pred eecCccCHHHHHHHHHhCCC--EEEEEeEcCCCCCEEEEeCCcc
Confidence 46788999999999999999 9999999999999999999987
|
This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment |
| >smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0022 Score=61.83 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=39.4
Q ss_pred CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 417 SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 417 sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
...+.+|+..+|..+++.|++++|+||+.++||.++++|+.++
T Consensus 23 ~~~~~~~q~~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~ 65 (135)
T smart00148 23 KQLWGESSVEGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTF 65 (135)
T ss_pred ccccCcccHHHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcc
Confidence 4567899999999999999999999999999999999999643
|
Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs. |
| >PF10223 DUF2181: Uncharacterized conserved protein (DUF2181); InterPro: IPR019356 This is region of approximately 250 residues with no known function | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.79 Score=48.57 Aligned_cols=201 Identities=13% Similarity=0.179 Sum_probs=114.3
Q ss_pred CchHHHHHHHHHCCCCeeeccccccc------CCcEEEeecCccccccccCCCcCCCccccccccccCccccccCCCHHH
Q 003550 422 SCTNLAYQKAISDGVDFIDCPVQMSK------DGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDE 495 (811)
Q Consensus 422 ENTl~Af~~Ai~~Gad~IE~DVqlTK------DGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~dlT~~E 495 (811)
=|+....+.|++..+.+||.||.+-+ +++||+.|.+..
T Consensus 11 vNsk~~L~~aL~~~~~miEaDV~l~~~~~~~~~~~PIMahPP~~------------------------------------ 54 (244)
T PF10223_consen 11 VNSKAELEEALSSDIMMIEADVLLGGLNTGNEDGIPIMAHPPAT------------------------------------ 54 (244)
T ss_pred cCCHHHHHHHhCCCCCEEEEEEEeecccCCCCCCCceeeCCCCC------------------------------------
Confidence 48889999999999999999999984 678888886321
Q ss_pred HhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHhcCCC
Q 003550 496 IQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYN 575 (811)
Q Consensus 496 Lk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~ 575 (811)
..-.||+|+|+.+... ..||-+++|.....+ ..+++|++..-.
T Consensus 55 --------------------------~SdltLee~L~~v~~~--~kGIKLDFKs~eav~---------pSl~~L~~~~~~ 97 (244)
T PF10223_consen 55 --------------------------DSDLTLEEWLDEVLSS--RKGIKLDFKSIEAVE---------PSLDLLAKLSDK 97 (244)
T ss_pred --------------------------CCcCcHHHHHHHHhcc--CcEEEEeccCHHHHH---------HHHHHHHHHhhc
Confidence 1224667777666644 359999999765433 334444432110
Q ss_pred CCCCcEEEEE------eCCh---------HHHHHHHhc-cCceE--EEEEcc----ccchhchHhHHHHHHhhhh-hccc
Q 003550 576 KQTALKVMIQ------STDS---------SVLMKLREK-TSYEL--VYKVKE----NIRDALNQTIEDIKKFADS-VVLS 632 (811)
Q Consensus 576 ~~~~~~Viiq------Sfd~---------~~L~~lk~~-p~~~~--~~l~~~----~~~d~~~~~l~~i~~~a~~-v~~~ 632 (811)
-+..|+|- +++. .+|..+++. |+.-+ ++.... .-+.-+.+.++++...+.. -.++
T Consensus 98 --l~~PvWiNADIl~Gp~~~~~~~~Vd~~~Fl~~v~~~fP~~tLS~GWTT~~~~~~~~~~Yt~~~v~~M~~l~~~~~~l~ 175 (244)
T PF10223_consen 98 --LTRPVWINADILPGPNGPTIPGPVDAKEFLSLVAEKFPHATLSLGWTTRWGPEVPNGGYTWEMVEEMLELCKGINQLP 175 (244)
T ss_pred --cCCCeeEeeeeccCCCCCCCCcccCHHHHHHHHHHhCCCEEEecCcccccCccCCCccccHHHHHHHHHHHHhhccCC
Confidence 01233332 2222 355566666 65432 222210 0011234556666666665 2233
Q ss_pred cceeecCCccccCCCHHHHHHH--HHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHHH
Q 003550 633 KESVYPLNSAFITSATDIVQRL--QSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAA 706 (811)
Q Consensus 633 ~~~i~p~~~~~l~~~~~~V~~~--~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~~ 706 (811)
...-+|.....+..+..-+..+ +..+..+-+|+-.++.+ ..+....+.+..|.+-|..|-|+..+
T Consensus 176 Q~VTFpvRA~l~~~S~~~l~wLL~~s~r~SLTvWs~~~D~v---------~v~~Ll~lr~~~~~~rVyyDlpe~~~ 242 (244)
T PF10223_consen 176 QPVTFPVRAGLARQSWPQLSWLLQQSPRYSLTVWSSKSDPV---------SVEDLLYLRRNFDKSRVYYDLPEPLR 242 (244)
T ss_pred CceeeeehhhhhhccHHHHHHHHcCCCCceEEEEecCCCCc---------cHHHHHHHHHhCCCcEEEEeCChhhh
Confidence 3444555443333333333333 22466778887654432 23345555567999999999997654
|
|
| >cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.035 Score=57.73 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=41.4
Q ss_pred eecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 410 VISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 410 IIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
--+|+-+ .-..-+.+..||.+|+..|++.||+|++=-.||+|||+|..++
T Consensus 14 ~SSHNTYL~g~Ql~~~ss~e~Y~~aL~~GcRcvElD~wdg~~~ePvV~HG~tl 66 (227)
T cd08594 14 ASSHNTYLTGDQLLSQSRVDMYARVLQAGCRCVEVDCWDGPDGEPVVHHGYTL 66 (227)
T ss_pred ecccCccccCCcccCcccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 3466532 2355688999999999999999999999999999999998654
|
This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif, |
| >cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2 | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.047 Score=57.68 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=42.5
Q ss_pred eeecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 409 LVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 409 lIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
+--+|+-+ .-...+.+..+|.+|+..|++.||+|++=-.||.|||+|..++
T Consensus 13 I~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~tl 66 (254)
T cd08633 13 ITSSHNTYLSGDQLMSQSRVDMYAWVLQAGCRCVEVDCWDGPDGEPIVHHGYTL 66 (254)
T ss_pred eecCccccccCCccCCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 34466642 2356788999999999999999999999999999999998766
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m |
| >cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.061 Score=56.23 Aligned_cols=54 Identities=15% Similarity=0.052 Sum_probs=43.5
Q ss_pred ccceeecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 406 ANLLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 406 ~~plIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
.-.+.-+|+-+ .-...+.+..+|..|++.|++.||+||+=..||.|+|+|..++
T Consensus 10 ~YfI~sSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~Wdg~~~ep~V~HG~t~ 66 (228)
T cd08599 10 HYFIFSSHNSYLTGNQLSSRSSTAPIIEALLRGCRVIELDLWPGGRGDICVLHGGTL 66 (228)
T ss_pred hhEEeccccccccCCccCCccCHHHHHHHHHhCCCEEEEEeecCCCCCeEEEeCCCC
Confidence 34456677643 2245678889999999999999999999999999999998653
|
This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi |
| >cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.055 Score=57.30 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=41.9
Q ss_pred eecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 410 VISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 410 IIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
--+|+-+ ....-+.+..+|.+|+..|++.||+|++=-+||.|||+|..++
T Consensus 14 ~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdG~~~eP~V~HG~tl 66 (254)
T cd08596 14 ESSHNTYLTGHQLKGESSVELYSQVLLTGCRCVELDCWDGDDGMPIIYHGHTL 66 (254)
T ss_pred ecCccccccCCccCCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 4466643 2345689999999999999999999999999999999998766
|
This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core |
| >cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1 | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.055 Score=57.10 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=41.3
Q ss_pred eecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 410 VISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 410 IIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
--+|+-+ .-..-+.+..+|.+|+..|++.||+|++=-.||.|||+|-.++
T Consensus 14 ~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~Tl 66 (253)
T cd08632 14 ASSHNTYLTGDQLLSQSKVDMYARVLQAGCRCVEVDCWDGPDGEPVVHHGYTL 66 (253)
T ss_pred ccCCCccccCCcccCcccHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 3466643 2345678999999999999999999999999999999998655
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m |
| >cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4 | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.055 Score=57.46 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=41.7
Q ss_pred eecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 410 VISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 410 IIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
--+|+-+ .-..-+.|..+|.+|+..|++.||+|++=-.||.|||+|..++
T Consensus 14 ~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08631 14 CSSHNTYLMEDQLRGQSSVEGYIRALKRGCRCVEVDVWDGPNGEPIVYHGHTF 66 (258)
T ss_pred ecCCCccccCCcccCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 3456543 2345688999999999999999999999999999999998766
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which |
| >cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.053 Score=57.54 Aligned_cols=50 Identities=16% Similarity=0.082 Sum_probs=41.5
Q ss_pred eecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 410 VISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 410 IIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
--+|+-+ .-..-+.+..+|.+|+..|++.||+|++=-.||.|||+|-.++
T Consensus 14 ~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~tl 66 (257)
T cd08595 14 SSSHNTYLVSDQLVGPSDLDGYVSALRKGCRCLEIDCWDGADNEPVVYHGYTL 66 (257)
T ss_pred eccccccccCCcccCcccHHHHHHHHHhCCcEEEEEeecCCCCCcEEecCCCc
Confidence 3455532 2345689999999999999999999999999999999998665
|
This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y) |
| >cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.057 Score=56.31 Aligned_cols=50 Identities=20% Similarity=0.137 Sum_probs=41.5
Q ss_pred eecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 410 VISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 410 IIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
--+|+-+ .-...+.+..+|..|+..|++.||+|++=-.||.|||+|-.++
T Consensus 14 ~SSHNTYL~g~Ql~~~Ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t~ 66 (226)
T cd08558 14 SSSHNTYLTGDQLTGESSVEAYIRALLRGCRCVELDCWDGPDGEPVVYHGHTL 66 (226)
T ss_pred cccccccccCCccCCccCHHHHHHHHHhCCcEEEEEeecCCCCCeEEeeCCCC
Confidence 3456532 2356789999999999999999999999999999999998644
|
This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki |
| >cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.068 Score=55.67 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=39.4
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+.-++|.++|..|+..|+. .||+|++=-.||.+||+|..++
T Consensus 25 Ql~~~ss~e~Y~~aL~~GcR--cvElD~wdg~~~ePvV~HG~tl 66 (227)
T cd08594 25 QLLSQSRVDMYARVLQAGCR--CVEVDCWDGPDGEPVVHHGYTL 66 (227)
T ss_pred cccCcccHHHHHHHHHhCCc--EEEEEeecCCCCCcEEeeCCCc
Confidence 56789999999999999999 9999999999999999999877
|
This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif, |
| >cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3 | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.067 Score=56.87 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=42.0
Q ss_pred eeecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 409 LVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 409 lIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
+--+|+-+ .-..-+.|..+|.+|+..|++.||+|++=-+||.|||+|-.++
T Consensus 13 I~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08630 13 ISSSHNTYLTDSQIGGPSSTEAYVRAFAQGCRCVELDCWEGPGGEPVIYHGHTL 66 (258)
T ss_pred eecccCccccCCcccCcccHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 34566542 2345678999999999999999999999999999999998655
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh |
| >cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1 | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.073 Score=56.50 Aligned_cols=50 Identities=14% Similarity=0.103 Sum_probs=41.5
Q ss_pred eecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 410 VISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 410 IIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
--+|+-+ .-..-+.|..+|.+|+..|++.||+|++=-.||.|||+|-.++
T Consensus 14 ~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08629 14 SSSHNTYLLEDQLTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTF 66 (258)
T ss_pred eccccccccCCccCCccCHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 3466543 2345688999999999999999999999999999999998655
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain |
| >cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2 | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.07 Score=56.59 Aligned_cols=51 Identities=18% Similarity=0.135 Sum_probs=42.0
Q ss_pred eeecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 409 LVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 409 lIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
+--+|+-+ .-..-+.+..+|..|+..|++.||+|++=-.||.|||+|..++
T Consensus 13 I~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~t~ 66 (254)
T cd08628 13 ISSSHNTYLTGDQLRSESSTEAYIRCLRMGCRCIELDCWDGPDGKPIIYHGWTR 66 (254)
T ss_pred eecCcCCcccCCeeecCCCHHHHHHHHHcCCcEEEEEeecCCCCCeEEeeCCCc
Confidence 44566643 1245688999999999999999999999999999999998655
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw |
| >cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.1 Score=54.62 Aligned_cols=42 Identities=12% Similarity=-0.001 Sum_probs=38.5
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+..++|.++|..|+..|+. .||+||+=..||.++|.|..++
T Consensus 25 Ql~~~ss~~~y~~aL~~GcR--cvElD~Wdg~~~ep~V~HG~t~ 66 (228)
T cd08599 25 QLSSRSSTAPIIEALLRGCR--VIELDLWPGGRGDICVLHGGTL 66 (228)
T ss_pred ccCCccCHHHHHHHHHhCCC--EEEEEeecCCCCCeEEEeCCCC
Confidence 45678999999999999999 9999999999999999998876
|
This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi |
| >cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.077 Score=56.45 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=41.5
Q ss_pred eecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 410 VISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 410 IIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
--+|+-+ .-..-+.|..+|.+|+..|++.||+|++=-.||.|||+|-.++
T Consensus 14 ~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t~ 66 (257)
T cd08593 14 ASSHNTYLLEDQLKGPSSTEAYIRALKKGCRCVELDCWDGPDGEPIIYHGHTL 66 (257)
T ss_pred ecccCccccCCcccCCccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 3456543 2346688999999999999999999999999999999998654
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is |
| >cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2 | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.096 Score=55.41 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=39.5
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+..++|.++|..|+..|+. .||+||+=-.||.+||.|..++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR--cvElD~Wdg~~~eP~V~HG~tl 66 (254)
T cd08633 25 QLMSQSRVDMYAWVLQAGCR--CVEVDCWDGPDGEPIVHHGYTL 66 (254)
T ss_pred ccCCccCHHHHHHHHHcCCc--EEEEEeecCCCCCcEEeeCCCc
Confidence 56788999999999999999 9999999999999999999888
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m |
| >cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.095 Score=54.89 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=41.7
Q ss_pred eeecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 409 LVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 409 lIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
+--+|+-+ .-..-+.|..+|.+|+..|++.||+||+=-.||.|||+|-.++
T Consensus 13 I~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~ep~V~HG~t~ 66 (231)
T cd08598 13 ISSSHNTYLLGRQLAGDSSVEGYIRALQRGCRCVEIDVWDGDDGEPVVTHGYTL 66 (231)
T ss_pred eeccccccccCCccCCccCHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 34566643 2345688999999999999999999999999999999998644
|
This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro |
| >cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4 | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.1 Score=55.37 Aligned_cols=51 Identities=16% Similarity=0.061 Sum_probs=41.3
Q ss_pred eeecCCCC---CCCCCCchHHHHHHHHHCCCCeeeccccccc--CCcEEEeecCcc
Q 003550 409 LVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSK--DGVPFCLSFINL 459 (811)
Q Consensus 409 lIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTK--DGv~Vv~HD~~L 459 (811)
+--+|+-+ .-..-+.+..+|.+|+..|++.||+||+=-. ||.|||+|-.++
T Consensus 13 I~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~eP~V~HG~tl 68 (257)
T cd08626 13 INSSHNTYLTGRQFGGKSSVEMYRQVLLAGCRCIELDCWDGKGEDQEPIITHGKAM 68 (257)
T ss_pred eecCcCccccCCcccCCccHHHHHHHHHcCCcEEEEEecCCCCCCCCCEEeeCCCC
Confidence 34566643 2345688999999999999999999999865 889999998765
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho |
| >cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2 | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.12 Score=54.82 Aligned_cols=41 Identities=20% Similarity=0.091 Sum_probs=38.3
Q ss_pred CCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 103 ~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
+.-+.|.++|..|+..|+. .||+||+=-.||.+||.|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcR--cvElD~Wdg~~~eP~V~HG~t~ 66 (254)
T cd08628 26 LRSESSTEAYIRCLRMGCR--CIELDCWDGPDGKPIIYHGWTR 66 (254)
T ss_pred eecCCCHHHHHHHHHcCCc--EEEEEeecCCCCCeEEeeCCCc
Confidence 5678899999999999999 9999999999999999999887
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw |
| >cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1 | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.12 Score=54.57 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=39.0
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+.-+.|.++|..|+..|+. .||+||+=-.||.+||+|..++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR--cvElD~Wdg~~~eP~V~HG~Tl 66 (253)
T cd08632 25 QLLSQSKVDMYARVLQAGCR--CVEVDCWDGPDGEPVVHHGYTL 66 (253)
T ss_pred cccCcccHHHHHHHHHcCCc--EEEEEeecCCCCCcEEeeCCCC
Confidence 45678999999999999999 9999999999999999999877
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m |
| >cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.12 Score=54.70 Aligned_cols=42 Identities=24% Similarity=0.160 Sum_probs=39.3
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+.-+.|.++|..|+..|+. .||+||+=-+||.+||.|..++
T Consensus 25 Ql~~~ss~~~y~~aL~~GcR--cvElD~wdG~~~eP~V~HG~tl 66 (254)
T cd08596 25 QLKGESSVELYSQVLLTGCR--CVELDCWDGDDGMPIIYHGHTL 66 (254)
T ss_pred ccCCccCHHHHHHHHHcCCc--EEEEEeecCCCCCcEEeeCCCc
Confidence 55678999999999999999 9999999999999999999887
|
This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core |
| >cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.12 Score=54.96 Aligned_cols=42 Identities=17% Similarity=0.107 Sum_probs=39.2
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+.-+.|.++|..|+..|+. .||+||+=-.||.+||+|..++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~ep~v~HG~tl 66 (257)
T cd08595 25 QLVGPSDLDGYVSALRKGCR--CLEIDCWDGADNEPVVYHGYTL 66 (257)
T ss_pred cccCcccHHHHHHHHHhCCc--EEEEEeecCCCCCcEEecCCCc
Confidence 45679999999999999999 9999999999999999999877
|
This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y) |
| >cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.14 Score=53.58 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=39.3
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+..++|.++|..|+..|+. .||+||+=-.||.+||+|..++
T Consensus 25 Ql~~~Ss~~~y~~aL~~GcR--cvElD~wdg~~~eP~v~HG~t~ 66 (226)
T cd08558 25 QLTGESSVEAYIRALLRGCR--CVELDCWDGPDGEPVVYHGHTL 66 (226)
T ss_pred ccCCccCHHHHHHHHHhCCc--EEEEEeecCCCCCeEEeeCCCC
Confidence 46788999999999999999 9999999999999999998876
|
This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki |
| >cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4 | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.12 Score=54.81 Aligned_cols=42 Identities=17% Similarity=0.077 Sum_probs=39.1
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+.-+.|.++|..|+..|+. .||+||+=-.||.+||+|..++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08631 25 QLRGQSSVEGYIRALKRGCR--CVEVDVWDGPNGEPIVYHGHTF 66 (258)
T ss_pred cccCccCHHHHHHHHHcCCc--EEEEEeecCCCCCcEEeeCCcc
Confidence 45678899999999999999 9999999999999999999888
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which |
| >cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2 | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.12 Score=55.04 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=41.1
Q ss_pred eecCCCC---CCCCCCchHHHHHHHHHCCCCeeeccccccc--CCcEEEeecCccc
Q 003550 410 VISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSK--DGVPFCLSFINLI 460 (811)
Q Consensus 410 IIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTK--DGv~Vv~HD~~L~ 460 (811)
--+|+-+ ....-+.|..+|.+|+..|++.||+|++=-. ||.|||+|..++.
T Consensus 14 ~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~ePvV~HG~tlt 69 (261)
T cd08624 14 NSSHNTYLTAGQFSGLSSPEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFTMT 69 (261)
T ss_pred ecCccccccCCccCCccCHHHHHHHHHcCCcEEEEEecCCCCCCCCCEEeeCCCcc
Confidence 3456543 2345688999999999999999999999764 7899999997763
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho |
| >cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1 | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.13 Score=54.68 Aligned_cols=50 Identities=10% Similarity=0.083 Sum_probs=40.3
Q ss_pred eecCCCC---CCCCCCchHHHHHHHHHCCCCeeeccccccc--CCcEEEeecCcc
Q 003550 410 VISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSK--DGVPFCLSFINL 459 (811)
Q Consensus 410 IIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTK--DGv~Vv~HD~~L 459 (811)
--+|+-+ .-..-+.+..+|.+|+..|++.||+|++=-. ||.|||+|..++
T Consensus 14 ~SSHNTYL~g~Ql~g~ss~e~y~~aL~~GcRcvElD~wdG~~~~~ePiV~HG~tl 68 (258)
T cd08623 14 NSSHNTYLTAGQLAGNSSVEMYRQVLLSGCRCVELDCWKGRTAEEEPVITHGFTM 68 (258)
T ss_pred ecCccccccCCccCCccCHHHHHHHHHcCCCEEEEEeeCCCCCCCCCEEeeCCCc
Confidence 3456543 2245688999999999999999999999876 689999999765
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho |
| >cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3 | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.14 Score=54.56 Aligned_cols=42 Identities=17% Similarity=0.049 Sum_probs=39.1
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+.-+.|.++|..|+..|+. .||+||+=-.||.+||+|..++
T Consensus 25 Ql~~~ss~~~y~~aL~~GcR--cvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08630 25 QIGGPSSTEAYVRAFAQGCR--CVELDCWEGPGGEPVIYHGHTL 66 (258)
T ss_pred cccCcccHHHHHHHHHcCCc--EEEEEeecCCCCCcEEeeCCcc
Confidence 45678999999999999999 9999999999999999999877
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh |
| >cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1 | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.16 Score=54.04 Aligned_cols=42 Identities=19% Similarity=0.122 Sum_probs=39.2
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+.-++|.++|..|+..|+. .||+||+=-.||.+||+|..++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08629 25 QLTGPSSTEAYIRALCKGCR--CLELDCWDGPNQEPIIYHGYTF 66 (258)
T ss_pred ccCCccCHHHHHHHHHhCCc--EEEEEeecCCCCCcEEeeCCCC
Confidence 46678999999999999999 9999999999999999999877
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain |
| >cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.15 Score=54.27 Aligned_cols=42 Identities=21% Similarity=0.089 Sum_probs=39.2
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+.-+.|.++|..|+..|+. .||+||+=-.||.+||+|..++
T Consensus 25 Ql~~~ss~~~y~~aL~~GcR--cvElD~wdg~~~eP~v~HG~t~ 66 (257)
T cd08593 25 QLKGPSSTEAYIRALKKGCR--CVELDCWDGPDGEPIIYHGHTL 66 (257)
T ss_pred cccCCccHHHHHHHHHhCCc--EEEEEeecCCCCCcEEeeCCcc
Confidence 45778999999999999999 9999999999999999999877
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is |
| >cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.18 Score=52.81 Aligned_cols=42 Identities=21% Similarity=0.102 Sum_probs=38.7
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+.-+.|.++|..|+..|+. .||+||+=-.||.+||.|..++
T Consensus 25 Ql~~~ss~~~y~~aL~~GcR--cvElD~wdg~~~ep~V~HG~t~ 66 (231)
T cd08598 25 QLAGDSSVEGYIRALQRGCR--CVEIDVWDGDDGEPVVTHGYTL 66 (231)
T ss_pred ccCCccCHHHHHHHHHhCCc--EEEEEeecCCCCCcEEeeCCCC
Confidence 45678999999999999999 9999999988999999999877
|
This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro |
| >cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.15 Score=54.24 Aligned_cols=50 Identities=14% Similarity=0.025 Sum_probs=40.7
Q ss_pred eecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccC--CcEEEeecCcc
Q 003550 410 VISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKD--GVPFCLSFINL 459 (811)
Q Consensus 410 IIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKD--Gv~Vv~HD~~L 459 (811)
--+|+-+ .-..-+.+..+|..|+..|++.||+|++=-.| |.|||+|-.++
T Consensus 14 ~SSHNTYL~g~Ql~g~ss~e~y~~aL~~GcRcvElD~Wdg~~~~~eP~V~HG~tl 68 (257)
T cd08591 14 NSSHNTYLTGRQFGGKSSVEMYRQVLLSGCRCIELDCWDGKGEDEEPIITHGKTM 68 (257)
T ss_pred ecccCccccCCcccCcccHHHHHHHHHhCCcEEEEEeecCCCCCCCCEEeeCCCC
Confidence 3456532 23456889999999999999999999999875 99999998665
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod |
| >cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4 | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.17 Score=53.73 Aligned_cols=42 Identities=19% Similarity=0.065 Sum_probs=38.2
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeec--CCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTK--DEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTk--Dg~~v~~HD~~l 145 (811)
.+.-++|.++|..|+..|+. .||+||+=-. ||.+||+|..++
T Consensus 25 Ql~~~ss~~~y~~aL~~GcR--cvElD~wdg~~~~~eP~V~HG~tl 68 (257)
T cd08626 25 QFGGKSSVEMYRQVLLAGCR--CIELDCWDGKGEDQEPIITHGKAM 68 (257)
T ss_pred cccCCccHHHHHHHHHcCCc--EEEEEecCCCCCCCCCEEeeCCCC
Confidence 45778999999999999999 9999999765 889999999887
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho |
| >PF10223 DUF2181: Uncharacterized conserved protein (DUF2181); InterPro: IPR019356 This is region of approximately 250 residues with no known function | Back alignment and domain information |
|---|
Probab=91.59 E-value=9.5 Score=40.56 Aligned_cols=36 Identities=19% Similarity=0.063 Sum_probs=31.4
Q ss_pred chHHHHHHHHHHcCCCCcEEEeeeeeec------CCcEEEecCC
Q 003550 106 DSSSIAYSLTLITSAPSVILWCDVQLTK------DEAGICFPDL 143 (811)
Q Consensus 106 ENTl~A~~~A~~~g~~~~~vE~DVqlTk------Dg~~v~~HD~ 143 (811)
=||.+.++.|+...+. ++|.||.+-+ ++++|.-|..
T Consensus 11 vNsk~~L~~aL~~~~~--miEaDV~l~~~~~~~~~~~PIMahPP 52 (244)
T PF10223_consen 11 VNSKAELEEALSSDIM--MIEADVLLGGLNTGNEDGIPIMAHPP 52 (244)
T ss_pred cCCHHHHHHHhCCCCC--EEEEEEEeecccCCCCCCCceeeCCC
Confidence 4899999999988887 9999999984 7888888865
|
|
| >cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3 | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.25 Score=52.76 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=40.9
Q ss_pred eeecCCCC---CCCCCCchHHHHHHHHHCCCCeeeccccccc--CCcEEEeecCcc
Q 003550 409 LVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSK--DGVPFCLSFINL 459 (811)
Q Consensus 409 lIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTK--DGv~Vv~HD~~L 459 (811)
+--+|+-+ ....-+.|..||..|+..|++.||+|++=-. |+.|||+|..++
T Consensus 13 I~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~eP~v~Hg~t~ 68 (258)
T cd08625 13 INSSHNTYLTAGQLTGLSSVEMYRQVLLTGCRCIELDCWKGRPPEEEPFITHGFTM 68 (258)
T ss_pred eecCccccccCCccCCccCHHHHHHHHHcCCCEEEEEecCCCCCCCCCEEeeCCcc
Confidence 34566643 2356788999999999999999999999763 589999999765
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho |
| >cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2 | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.23 Score=52.85 Aligned_cols=42 Identities=21% Similarity=0.125 Sum_probs=38.0
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeec--CCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTK--DEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTk--Dg~~v~~HD~~l 145 (811)
.+.-++|.++|..|+..|+. .||+||+=-. ||.+||.|..++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~~~ePvV~HG~tl 68 (261)
T cd08624 25 QFSGLSSPEMYRQVLLSGCR--CVELDCWKGKPPDEEPIITHGFTM 68 (261)
T ss_pred ccCCccCHHHHHHHHHcCCc--EEEEEecCCCCCCCCCEEeeCCCc
Confidence 55678999999999999999 9999999663 789999999988
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho |
| >cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1 | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.25 Score=52.62 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=37.8
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeec--CCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTK--DEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTk--Dg~~v~~HD~~l 145 (811)
.+.-+.|.++|..|+..|+. .||+|++=-. ||.+||.|..++
T Consensus 25 Ql~g~ss~e~y~~aL~~GcR--cvElD~wdG~~~~~ePiV~HG~tl 68 (258)
T cd08623 25 QLAGNSSVEMYRQVLLSGCR--CVELDCWKGRTAEEEPVITHGFTM 68 (258)
T ss_pred ccCCccCHHHHHHHHHcCCC--EEEEEeeCCCCCCCCCEEeeCCCc
Confidence 45678999999999999999 9999999776 689999999877
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho |
| >cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.29 Score=52.07 Aligned_cols=42 Identities=19% Similarity=0.055 Sum_probs=38.4
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecC--CcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKD--EAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkD--g~~v~~HD~~l 145 (811)
.+.-+.|.++|..|+..|+. .||+||+=-.| |.+||+|..++
T Consensus 25 Ql~g~ss~e~y~~aL~~GcR--cvElD~Wdg~~~~~eP~V~HG~tl 68 (257)
T cd08591 25 QFGGKSSVEMYRQVLLSGCR--CIELDCWDGKGEDEEPIITHGKTM 68 (257)
T ss_pred cccCcccHHHHHHHHHhCCc--EEEEEeecCCCCCCCCEEeeCCCC
Confidence 45678999999999999999 99999998875 99999999887
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod |
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.79 E-value=0.19 Score=59.85 Aligned_cols=51 Identities=18% Similarity=0.092 Sum_probs=44.0
Q ss_pred eecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccc
Q 003550 410 VISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (811)
Q Consensus 410 IIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~ 460 (811)
--+|+-+ -...-|.++.||.+|+++|+..||+|.+=-.||.||++|-.++.
T Consensus 321 sSSHNTYLTGDQlrSESSleaYar~LrMGCRCIELDCWdGpd~~pvIyHG~T~T 374 (1267)
T KOG1264|consen 321 SSSHNTYLTGDQLRSESSLEAYARCLRMGCRCIELDCWDGPDGKPVIYHGHTRT 374 (1267)
T ss_pred eccCcceecccccccccCHHHHHHHHHhCCeEEEeecccCCCCCceEEecccee
Confidence 4567753 23457999999999999999999999999999999999998764
|
|
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
Probab=90.67 E-value=0.71 Score=46.47 Aligned_cols=144 Identities=17% Similarity=0.230 Sum_probs=92.7
Q ss_pred CCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc--c
Q 003550 522 GKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK--T 599 (811)
Q Consensus 522 ~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~--p 599 (811)
+.+.+|.++.+.+++.++. +.+.++.- .|+.-.+.-++.|++++-. + =|.|..+..+++.|+. .
T Consensus 28 g~I~~l~~~v~~~~~~gK~--vfVHiDli------~Gl~~D~~~i~~L~~~~~~----d--GIISTk~~~i~~Ak~~gl~ 93 (175)
T PF04309_consen 28 GDIGNLKDIVKRLKAAGKK--VFVHIDLI------EGLSRDEAGIEYLKEYGKP----D--GIISTKSNLIKRAKKLGLL 93 (175)
T ss_dssp EECCCHHHHHHHHHHTT-E--EEEECCGE------ETB-SSHHHHHHHHHTT------S--EEEESSHHHHHHHHHTT-E
T ss_pred CcHHHHHHHHHHHHHcCCE--EEEEehhc------CCCCCCHHHHHHHHHcCCC----c--EEEeCCHHHHHHHHHcCCE
Confidence 6799999999999998754 45554421 2333335667888886533 1 4778999999999998 7
Q ss_pred CceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccCCCHHHHHHHHHc-CCcEEEEecCCcccccccccC
Q 003550 600 SYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSF-KLPVYVETFSNEFVSQAWDFF 678 (811)
Q Consensus 600 ~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~~~V~~~~~~-Gl~V~vwtvnne~~~~~~d~~ 678 (811)
.+++.|++++. +++...+......++.-.+.|. .-+.+++++++. +.++.+-++=...
T Consensus 94 tIqRiFliDS~-------al~~~~~~i~~~~PD~vEilPg------~~p~vi~~i~~~~~~PiIAGGLI~~~-------- 152 (175)
T PF04309_consen 94 TIQRIFLIDSS-------ALETGIKQIEQSKPDAVEILPG------VMPKVIKKIREETNIPIIAGGLIRTK-------- 152 (175)
T ss_dssp EEEEEE-SSHH-------HHHHHHHHHHHHT-SEEEEESC------CHHHHHCCCCCCCSS-EEEESS--SH--------
T ss_pred EEEEeeeecHH-------HHHHHHHHHhhcCCCEEEEchH------HHHHHHHHHHHhcCCCEEeecccCCH--------
Confidence 88999998763 3444444444556655556663 124677776554 6888888764332
Q ss_pred CChHHHHHHHHHhcCCCEEEeCChHHH
Q 003550 679 SDPTVEINTYYEGAGIDGVITEFPMTA 705 (811)
Q Consensus 679 ~D~~~e~~~~l~~~GVDGIiTD~P~~~ 705 (811)
+++...+ +.|+++|.|-.++++
T Consensus 153 ----e~v~~al-~aGa~aVSTS~~~LW 174 (175)
T PF04309_consen 153 ----EDVEEAL-KAGADAVSTSNKELW 174 (175)
T ss_dssp ----HHHHHHC-CTTCEEEEE--HHHC
T ss_pred ----HHHHHHH-HcCCEEEEcCChHhc
Confidence 4688887 999999999888764
|
Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G. |
| >cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3 | Back alignment and domain information |
|---|
Probab=89.81 E-value=0.39 Score=51.27 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=37.9
Q ss_pred CCCCCchHHHHHHHHHHcCCCCcEEEeeeeee--cCCcEEEecCCCC
Q 003550 101 SGIFPDSSSIAYSLTLITSAPSVILWCDVQLT--KDEAGICFPDLKL 145 (811)
Q Consensus 101 ~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlT--kDg~~v~~HD~~l 145 (811)
..+.-+.|.+||..|+..|+. .||+||+=- .|+.+||+|..++
T Consensus 24 ~Ql~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~~~eP~v~Hg~t~ 68 (258)
T cd08625 24 GQLTGLSSVEMYRQVLLTGCR--CIELDCWKGRPPEEEPFITHGFTM 68 (258)
T ss_pred CccCCccCHHHHHHHHHcCCC--EEEEEecCCCCCCCCCEEeeCCcc
Confidence 355779999999999999999 999999965 3589999999887
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho |
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.32 E-value=0.27 Score=58.52 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=41.6
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcch
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI 151 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~ 151 (811)
.+--|+|++||..|+.+|+. .||+|.+=-.||.+|++|..++ ||-|
T Consensus 332 QlrSESSleaYar~LrMGCR--CIELDCWdGpd~~pvIyHG~T~--TtKI 377 (1267)
T KOG1264|consen 332 QLRSESSLEAYARCLRMGCR--CIELDCWDGPDGKPVIYHGHTR--TTKI 377 (1267)
T ss_pred ccccccCHHHHHHHHHhCCe--EEEeecccCCCCCceEEeccce--eeee
Confidence 44579999999999999999 9999999999999999999987 5544
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=86.96 E-value=0.8 Score=54.46 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=45.4
Q ss_pred ccceeecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcccc
Q 003550 406 ANLLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461 (811)
Q Consensus 406 ~~plIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~r 461 (811)
+-.+--+|+-+ ....-+.+..+|.+|+..|++.||+|++--.+|.|||+|-.++..
T Consensus 123 hYfI~sSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~t~t~ 181 (598)
T PLN02230 123 HYFIFTGHNSYLTGNQLSSNCSELPIADALRRGVRVVELDLWPRGTDDVCVKHGRTLTK 181 (598)
T ss_pred hheeecccCccccCCcccCccCHHHHHHHHHcCCcEEEEeccCCCCCCcEEeeCCCCcC
Confidence 34455677742 235568899999999999999999999988889999999987754
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=83.70 E-value=1.3 Score=52.83 Aligned_cols=50 Identities=8% Similarity=0.056 Sum_probs=42.8
Q ss_pred EEEeCCC---CCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 94 VVARGGF---SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 94 viaHRG~---~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
-.+|.-+ ..+..+.|.++|..|+..|+. .||+|++=-.+|.+||+|..++
T Consensus 127 ~sSHNTYL~g~Ql~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~ep~v~HG~t~ 179 (598)
T PLN02230 127 FTGHNSYLTGNQLSSNCSELPIADALRRGVR--VVELDLWPRGTDDVCVKHGRTL 179 (598)
T ss_pred ecccCccccCCcccCccCHHHHHHHHHcCCc--EEEEeccCCCCCCcEEeeCCCC
Confidence 4456542 356788999999999999999 9999999878899999999888
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=82.98 E-value=1.5 Score=51.96 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=43.1
Q ss_pred cceeecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCc-EEEeecCcccc
Q 003550 407 NLLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGV-PFCLSFINLIN 461 (811)
Q Consensus 407 ~plIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv-~Vv~HD~~L~r 461 (811)
-.+--+|+-+ .-...+.+..+|.+|+..|++.||+|++=-.||. |||+|-.++..
T Consensus 115 YfI~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~p~v~Hg~t~ts 173 (567)
T PLN02228 115 YFVYTGHNSYLTGNQVNSRSSVEPIVQALRKGVKVIELDLWPNPSGNAAEVRHGRTLTS 173 (567)
T ss_pred heeecccCccccCCcccCccCHHHHHHHHHcCCcEEEEEeccCCCCCCCEEEeCCcccC
Confidence 3445667643 2356688999999999999999999999766666 89999977643
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=82.70 E-value=11 Score=40.27 Aligned_cols=193 Identities=21% Similarity=0.287 Sum_probs=100.5
Q ss_pred CCchHHHHHHHHHCCCCeeecccccc---cCCcEEEee-cCccccccccCCCcCCCccccccccccCccccccCCCHHHH
Q 003550 421 PSCTNLAYQKAISDGVDFIDCPVQMS---KDGVPFCLS-FINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEI 496 (811)
Q Consensus 421 PENTl~Af~~Ai~~Gad~IE~DVqlT---KDGv~Vv~H-D~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~dlT~~EL 496 (811)
+|-|+...+...+.|||+||+-+=.| .||-.|--- ..-|. .| ..-+-.++.+
T Consensus 15 ~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~-----------------------~G-~~~~~~~~~~ 70 (250)
T PLN02591 15 LDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALE-----------------------KG-TTLDSVISML 70 (250)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHH-----------------------cC-CCHHHHHHHH
Confidence 46778878888899999999988765 244333221 11111 12 1223345555
Q ss_pred hccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEE-EecchhHHHhhcCccHHHHHHHHHHhcCCC
Q 003550 497 QTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLI-SIENAVYLAEKQGMSVTNSVMEALGNAGYN 575 (811)
Q Consensus 497 k~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~I-EiK~~~~~~~~~g~~~~~~v~~~L~~~g~~ 575 (811)
++++.....|.- ....-|+-+ -..+++|++.+++.+- -|+.| ++=. + -.+.+.+..+++|+.
T Consensus 71 ~~~r~~~~~p~i-lm~Y~N~i~-----~~G~~~F~~~~~~aGv-~GviipDLP~----e------e~~~~~~~~~~~gl~ 133 (250)
T PLN02591 71 KEVAPQLSCPIV-LFTYYNPIL-----KRGIDKFMATIKEAGV-HGLVVPDLPL----E------ETEALRAEAAKNGIE 133 (250)
T ss_pred HHHhcCCCCCEE-EEecccHHH-----HhHHHHHHHHHHHcCC-CEEEeCCCCH----H------HHHHHHHHHHHcCCe
Confidence 555532222310 001112222 1367889998888742 25444 3311 1 123567777888886
Q ss_pred CCCCcEEEEEeCChH--HHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccCCCHHHHH
Q 003550 576 KQTALKVMIQSTDSS--VLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQ 652 (811)
Q Consensus 576 ~~~~~~ViiqSfd~~--~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~~~V~ 652 (811)
.|.+-|.+.. -++++.+. +.+- |++... + ..+. +.. .+ ..-.++++
T Consensus 134 -----~I~lv~Ptt~~~ri~~ia~~~~gFI--Y~Vs~~-G-------------vTG~---~~~-~~------~~~~~~i~ 182 (250)
T PLN02591 134 -----LVLLTTPTTPTERMKAIAEASEGFV--YLVSST-G-------------VTGA---RAS-VS------GRVESLLQ 182 (250)
T ss_pred -----EEEEeCCCCCHHHHHHHHHhCCCcE--EEeeCC-C-------------CcCC---CcC-Cc------hhHHHHHH
Confidence 7777765554 36666655 4443 444321 0 0000 000 00 01135677
Q ss_pred HHHHc-CCcEEEE-ecCCcccccccccCCChHHHHHHHHHhcCCCEEEe
Q 003550 653 RLQSF-KLPVYVE-TFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVIT 699 (811)
Q Consensus 653 ~~~~~-Gl~V~vw-tvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiT 699 (811)
++++. +++|.+- ++++.. ++.++. +.|+||+|.
T Consensus 183 ~vk~~~~~Pv~vGFGI~~~e-------------~v~~~~-~~GADGvIV 217 (250)
T PLN02591 183 ELKEVTDKPVAVGFGISKPE-------------HAKQIA-GWGADGVIV 217 (250)
T ss_pred HHHhcCCCceEEeCCCCCHH-------------HHHHHH-hcCCCEEEE
Confidence 77764 6776553 455442 466665 899999986
|
|
| >COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription] | Back alignment and domain information |
|---|
Probab=82.55 E-value=26 Score=35.15 Aligned_cols=141 Identities=17% Similarity=0.216 Sum_probs=91.3
Q ss_pred CCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc--c
Q 003550 522 GKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK--T 599 (811)
Q Consensus 522 ~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~--p 599 (811)
+.+..|++....+|+.++. ++|.+..- .|+.-.+...+-+++..-.+ =|.|.-+.++...|++ .
T Consensus 32 ~~i~~ik~ivk~lK~~gK~--vfiHvDLv------~Gl~~~e~~i~fi~~~~~pd------GIISTk~~~i~~Akk~~~~ 97 (181)
T COG1954 32 GHILNIKEIVKKLKNRGKT--VFIHVDLV------EGLSNDEVAIEFIKEVIKPD------GIISTKSNVIKKAKKLGIL 97 (181)
T ss_pred chhhhHHHHHHHHHhCCcE--EEEEeHHh------cccCCchHHHHHHHHhccCC------eeEEccHHHHHHHHHcCCc
Confidence 5799999999999998654 44444311 22222233445555432221 2668888999999887 8
Q ss_pred CceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccCCCHHHHHHHHH-cCCcEEEEecCCcccccccccC
Q 003550 600 SYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQS-FKLPVYVETFSNEFVSQAWDFF 678 (811)
Q Consensus 600 ~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~~~V~~~~~-~Gl~V~vwtvnne~~~~~~d~~ 678 (811)
-+.+.|++++. +++.....+..+.++.--+.|. .-+.+++++.+ .+.+|.+-++=+..
T Consensus 98 aIqR~FilDS~-------Al~~~~~~i~~~~pD~iEvLPG------v~Pkvi~~i~~~t~~piIAGGLi~t~-------- 156 (181)
T COG1954 98 AIQRLFILDSI-------ALEKGIKQIEKSEPDFIEVLPG------VMPKVIKEITEKTHIPIIAGGLIETE-------- 156 (181)
T ss_pred eeeeeeeecHH-------HHHHHHHHHHHcCCCEEEEcCc------ccHHHHHHHHHhcCCCEEeccccccH--------
Confidence 88999998863 3444444444555654445553 23577777754 47888888764442
Q ss_pred CChHHHHHHHHHhcCCCEEEeCCh
Q 003550 679 SDPTVEINTYYEGAGIDGVITEFP 702 (811)
Q Consensus 679 ~D~~~e~~~~l~~~GVDGIiTD~P 702 (811)
+|+...+ ++|+-.|.|-.-
T Consensus 157 ----Eev~~Al-~aGA~avSTs~~ 175 (181)
T COG1954 157 ----EEVREAL-KAGAVAVSTSNT 175 (181)
T ss_pred ----HHHHHHH-HhCcEEEeecch
Confidence 5788888 899998887544
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.31 E-value=1.6 Score=52.45 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=47.7
Q ss_pred cccccceeecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccc
Q 003550 403 SKSANLLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (811)
Q Consensus 403 ~~~~~plIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~ 460 (811)
|..+-.+--+|+-+ .-..-+++..+|-.|++.|+++||+|++--.+|.|||+|-.++.
T Consensus 294 PLsHYFI~SSHNTYLtg~Ql~g~sSvegyI~ALk~GcR~vElD~Wdg~~~epvV~HG~TlT 354 (746)
T KOG0169|consen 294 PLSHYFISSSHNTYLTGDQLGGPSSVEGYIRALKKGCRCVELDCWDGPNGEPVVYHGHTLT 354 (746)
T ss_pred cchhheEeccccceecccccCCccccHHHHHHHHhCCeEEEEecccCCCCCeeEecCcccc
Confidence 33444556788853 33456999999999999999999999999999999999998774
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=81.97 E-value=1.7 Score=51.89 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=44.2
Q ss_pred cccceeecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCC-cEEEeecCcccc
Q 003550 405 SANLLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDG-VPFCLSFINLIN 461 (811)
Q Consensus 405 ~~~plIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDG-v~Vv~HD~~L~r 461 (811)
..-.+--+|+-+ .-...+.|..+|.+|+..|++.||+|++=-.|| .|||+|-.++..
T Consensus 130 s~YfI~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~p~v~Hg~t~ts 190 (599)
T PLN02952 130 SHYFIYTGHNSYLTGNQLSSDCSEVPIVKALQRGVRVIELDLWPGSTKDEILVLHGRTLTT 190 (599)
T ss_pred hhheeeccccccccCCccCCcCCHHHHHHHHHcCCcEEEEEeecCCCCCCCEEEeCCcccc
Confidence 334455677743 345668999999999999999999999977765 489999977753
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=81.10 E-value=3.5 Score=46.33 Aligned_cols=159 Identities=20% Similarity=0.214 Sum_probs=85.9
Q ss_pred HHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHh-hcccccCCCcccccCCCcccCCCChHHHHHH
Q 003550 258 VNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVDESLYLLPHTTIVLDA 336 (811)
Q Consensus 258 ~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~-~a~gi~~~~~~i~~~~~~~~l~~~~~~V~~a 336 (811)
++-|+++++..| ++++.-++-+.+.+.. +.|.+-.-. .++++ +-.|+.+-+-+-.-.|..| =..-++.+
T Consensus 65 WeRLr~lk~~~~--nT~LQMLlRGQNlvGY---rhyaDDvVe-~Fv~ka~~nGidvfRiFDAlND~RN----l~~ai~a~ 134 (472)
T COG5016 65 WERLRELKKAVP--NTKLQMLLRGQNLVGY---RHYADDVVE-KFVEKAAENGIDVFRIFDALNDVRN----LKTAIKAA 134 (472)
T ss_pred HHHHHHHHHhCC--CcHHHHHHccCccccc---cCCchHHHH-HHHHHHHhcCCcEEEechhccchhH----HHHHHHHH
Confidence 577999999998 7787655555555432 345443221 33433 3456654332211111111 13468899
Q ss_pred HHcCCeEEE---EecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccC------CCCcchhhhhhhccCCCcccccc
Q 003550 337 HKERLEVFA---SNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDF------PLTPSAAVDCFAHLGKNASKSAN 407 (811)
Q Consensus 337 h~~Gl~V~~---Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~------P~~a~~~~~~~~~~~~~~~~~~~ 407 (811)
++.|.++.+ +|..- .-..+|+ .+-.+++.+.| ||.|.--. |..+-+.+++....- .-+
T Consensus 135 kk~G~h~q~~i~YT~sP--vHt~e~y---v~~akel~~~g---~DSIciKDmaGlltP~~ayelVk~iK~~~-----~~p 201 (472)
T COG5016 135 KKHGAHVQGTISYTTSP--VHTLEYY---VELAKELLEMG---VDSICIKDMAGLLTPYEAYELVKAIKKEL-----PVP 201 (472)
T ss_pred HhcCceeEEEEEeccCC--cccHHHH---HHHHHHHHHcC---CCEEEeecccccCChHHHHHHHHHHHHhc-----CCe
Confidence 999998754 44322 2222232 34456688888 99986432 443434443332210 012
Q ss_pred ceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccc
Q 003550 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQ 444 (811)
Q Consensus 408 plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVq 444 (811)
..+-.|- .+|. +..+|.+|++.|+|+|++-+-
T Consensus 202 v~lHtH~-TsG~----a~m~ylkAvEAGvD~iDTAis 233 (472)
T COG5016 202 VELHTHA-TSGM----AEMTYLKAVEAGVDGIDTAIS 233 (472)
T ss_pred eEEeccc-ccch----HHHHHHHHHHhCcchhhhhhc
Confidence 2233332 2343 458899999999999877554
|
|
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.20 E-value=13 Score=39.80 Aligned_cols=183 Identities=15% Similarity=0.155 Sum_probs=101.5
Q ss_pred HHHHHhhhcCceEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHh-hhH-HHHHhhcccccCCCccc
Q 003550 240 FVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLL-KNL-TFIKTFASGILVPKDYI 317 (811)
Q Consensus 240 ~l~~~lk~~~~~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~-~~L-~~i~~~a~gi~~~~~~i 317 (811)
.+++.+-+.+.+.+++ ..+.++.+.+.... +.+++..+-..+.+.+.. |.... ... +.++--++++.+.- |+
T Consensus 47 ~~v~~v~~~g~dav~~-~~G~~~~~~~~y~~-dvplivkl~~~t~l~~~~---~~~~~~~~ve~ai~lgadAV~~~V-y~ 120 (265)
T COG1830 47 NIVAKVAEAGADAVAM-TPGIARSVHRGYAH-DVPLIVKLNGSTSLSPDP---NDQVLVATVEDAIRLGADAVGATV-YV 120 (265)
T ss_pred HHHHHHHhcCCCEEEe-cHhHHhhcCccccC-CcCEEEEeccccccCCCc---ccceeeeeHHHHHhCCCcEEEEEE-ec
Confidence 4555555666665533 67888888876643 567776555544333322 32221 122 22333344443321 11
Q ss_pred ccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCCh--HHHH-HHHHHcCCCccCeEeccCCCCcchhhhh
Q 003550 318 WPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDP--LTEY-LSFIDNGDFSVDGVLSDFPLTPSAAVDC 394 (811)
Q Consensus 318 ~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~--~~e~-~~~i~~G~~~VDgIiTD~P~~a~~~~~~ 394 (811)
-.......+..-.+++++||+.|+.+.+|.-........+|-.|+ .... +--...| .|-|=|+||.-...+.
T Consensus 121 Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelG---ADIiK~~ytg~~e~F~-- 195 (265)
T COG1830 121 GSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELG---ADIIKTKYTGDPESFR-- 195 (265)
T ss_pred CCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhc---CCeEeecCCCChHHHH--
Confidence 111111223233578999999999999998754322222233444 1111 2345667 9999999997542222
Q ss_pred hhccCCCccccccceeecCCCCCCCCCCchHHHHHHHHHCCCCee
Q 003550 395 FAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFI 439 (811)
Q Consensus 395 ~~~~~~~~~~~~~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~I 439 (811)
....- -+-|+||+ .|.++.-++..+.--..|++.||.++
T Consensus 196 --~vv~~---~~vpVvia-GG~k~~~~~~~l~~~~~ai~aGa~G~ 234 (265)
T COG1830 196 --RVVAA---CGVPVVIA-GGPKTETEREFLEMVTAAIEAGAMGV 234 (265)
T ss_pred --HHHHh---CCCCEEEe-CCCCCCChHHHHHHHHHHHHccCcch
Confidence 22110 12466664 34555578899999999999999775
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 811 | ||||
| 1ydy_A | 356 | Crystal Structure Of Periplasmic Glycerophosphodies | 2e-04 | ||
| 1t8q_A | 336 | Structural Genomics, Crystal Structure Of Glyceroph | 3e-04 |
| >pdb|1YDY|A Chain A, Crystal Structure Of Periplasmic Glycerophosphodiester Phosphodiesterase From Escherichia Coli Length = 356 | Back alignment and structure |
|
| >pdb|1T8Q|A Chain A, Structural Genomics, Crystal Structure Of Glycerophosphoryl Diester Phosphodiesterase From E. Coli Length = 336 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A Length = 356 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 1e-28
Identities = 65/342 (19%), Positives = 126/342 (36%), Gaps = 45/342 (13%)
Query: 402 ASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461
A+ S +VI+ GASG P T A A + G D+++ + M+KD L L
Sbjct: 25 AADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDR 84
Query: 462 STNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTL-----IPQISNPYFKFKLFRNP 516
T+ A + G ++ DEI++L + + R P
Sbjct: 85 VTDVADRFPDRARKD------GRY-YAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFP 137
Query: 517 KNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAV---YLAEKQGMSVTNSVMEALGNAG 573
K+ + + +E + N +G I I + + ++G + +E L G
Sbjct: 138 MGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYG 197
Query: 574 YNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQT--------------- 618
Y + KV +Q D+ L +++ + ++ ++ A
Sbjct: 198 YTGKDD-KVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNY 256
Query: 619 ----------IEDIKKFADSVVLSKESVYPLNSAFITSA-TDIVQRLQSFKLPVYVETFS 667
++ + ++AD + + S T +VQ Q KL V+ T
Sbjct: 257 NYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVR 316
Query: 668 NEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYR 709
++ + ++ D + Y AG++G+ T+FP A ++
Sbjct: 317 SD---KLPEYTPDVNQLYDALYNKAGVNGLFTDFPDKAVKFL 355
|
| >1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A Length = 356 | Back alignment and structure |
|---|
Score = 94.7 bits (235), Expect = 5e-21
Identities = 60/364 (16%), Positives = 122/364 (33%), Gaps = 52/364 (14%)
Query: 68 GVIAQVSAQGSNATSRWQTLTGDPPFVVA-RGGFSGIFPDSSSIAYSLTLITSAPSVILW 126
+ + S + V+A RG SG P+ + A ++ A L
Sbjct: 7 NLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGA-SGYLPEHTLPAKAMAYAQGAD--YLE 63
Query: 127 CDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDL---- 182
D+ +TKD+ + D LD +++A F + + +++ID+TL+++
Sbjct: 64 QDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRAR-------KDGRYYAIDFTLDEIKSLK 116
Query: 183 ------SNIILNQGVYSRTDKFDGNGFQILTVQDM--------ARQIKPPGLWLNIQHDA 228
Y + F++ T ++ K G++ I+
Sbjct: 117 FTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPW 176
Query: 229 FYAQHNLSMRSFVLSVSRSVVVN------YISSPEVNFLRSIAARFRPSMTKLVFRFLGK 282
F+ Q + + L V + Y+ + + L+ I P M +
Sbjct: 177 FHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLI 236
Query: 283 SEIEP-----------TTNQTYGSLLK--NLTFIKTFASGILVPKDYIWPVDESLYLLPH 329
+ + N Y + K + + +A GI + +
Sbjct: 237 AYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKL 296
Query: 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPS 389
T +V DA + +L V +D + + L + L + G V+G+ +DFP
Sbjct: 297 TGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDAL-YNKAG---VNGLFTDFPDKAV 352
Query: 390 AAVD 393
++
Sbjct: 353 KFLN 356
|
| >3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi} Length = 313 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 3e-18
Identities = 55/341 (16%), Positives = 112/341 (32%), Gaps = 52/341 (15%)
Query: 391 AVDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGV 450
++ F+ L + + VI GA G P T + ++ GV ++ V M+ DGV
Sbjct: 1 GMNGFSQLEGLRGHPSVVRVIGHRGARGVMPENTLEGFAFTLAAGVRALEFDVVMTADGV 60
Query: 451 PFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTL-IPQISNPYFK 509
P +L N+ + G+ + + EI+ L + +
Sbjct: 61 PVVTHNHHLANAMT---------RDGQGHWLTGAERQVAEMTYAEIRALDVGGLDGRTVY 111
Query: 510 FKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVL---ISIENAVYLAEKQGMSVTNSVM 566
+ F + +L + L++ + L + + A+ + +V+
Sbjct: 112 GRRFPDQAFLTGIHVPRLGELLDLCAGYGDQAPYLLLELKSDPALMHDHAARAEMVAAVL 171
Query: 567 EALGNAGYNKQTALKVMIQSTDSSVLMKLRE-----KTSY--ELVYKVKENIRDALNQTI 619
+ + ++ S D ++L + R TSY +L + D+
Sbjct: 172 ADVRRYRMEPR----TVMHSFDWALLGECRRQAPDLPTSYLSQLPENADDPGEDSAKPVG 227
Query: 620 EDIKKFADSVVLSKESVYP----LNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAW 675
D + +S+ + S +T ++V L V W
Sbjct: 228 PDYDRMTESLPQAVASAGGQLWCPYFLDVT--PELVAEAHDLGLIVLT-----------W 274
Query: 676 DFFSDPTV----EINTYYEGAGIDGVITEFPMTAARYRRNR 712
TV +I G+DG++T++P R +
Sbjct: 275 ------TVNEPEDIRRMAT-TGVDGIVTDYPGRTQRILIDM 308
|
| >2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A Length = 287 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 9e-15
Identities = 57/316 (18%), Positives = 98/316 (31%), Gaps = 83/316 (26%)
Query: 415 GASGDYPSCTNLAYQKAISD-GVDFIDCPVQMSKDGVPFCL--SFINLINSTNAAQSKFN 471
GASG P T AY K+ ++ +I+ +Q +KDG + +N
Sbjct: 31 GASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDETVNR------------ 78
Query: 472 SITTTIPEIMAGSG-IFSFSLIWDEIQTL-------IPQISNPYFKFKLFRNPKNKNAGK 523
TT G G + ++ DE++ L +K + P
Sbjct: 79 --TTN------GHGKVEDYT--LDELKQLDAGSWFNKKYPKYARASYKNAKVP------- 121
Query: 524 FMKLSDFLEMAKNANSLSGVLISIE---NAVY--LAEKQGMSVTNSVMEALGNAGYNKQT 578
L + LE IE VY + E+ + ++ NK
Sbjct: 122 --TLDEILERYGP-----NANYYIETKSPDVYPGMEEQ-----LLASLKKHHLLNNNKLK 169
Query: 579 ALKVMIQSTDSSVLMKLREKT-SYELVYKVKENIRDALN-QTIEDIKKFADSVVLSKESV 636
VMIQS L K+ + LV V + N Q +++I+ +A + +
Sbjct: 170 NGHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGELQQFNDQRLKEIRSYAIGLGPDYTDL 229
Query: 637 YPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDG 696
L+ V+ T + + ++ + G+DG
Sbjct: 230 TE----------QNTHHLKDLGFIVHPYTVNEK-------------ADMLRLNK-YGVDG 265
Query: 697 VITEFPMTAARYRRNR 712
V T F +
Sbjct: 266 VFTNFADKYKEVIKEG 281
|
| >2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A Length = 287 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 59/330 (17%), Positives = 102/330 (30%), Gaps = 84/330 (25%)
Query: 75 AQGSNATSRWQTLTGDPPFVVA-RGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTK 133
A A LT + +A RG SG P+ + AY + S I D+Q TK
Sbjct: 7 ANKPQAIQWHTNLTNERFTTIAHRGA-SGYAPEHTFQAYDKSHNELKASYIE-IDLQRTK 64
Query: 134 DEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQG--- 190
D + D ++ +N DYTL++L L+ G
Sbjct: 65 DGHLVAMHDETVNRTTNGH-------------------GKVEDYTLDELKQ--LDAGSWF 103
Query: 191 --VYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQ--HDAFY-----------AQHNL 235
Y + + ++ T+ ++ + P I+ Y +H+L
Sbjct: 104 NKKYPKYARASYKNAKVPTLDEILERYGP-NANYYIETKSPDVYPGMEEQLLASLKKHHL 162
Query: 236 SMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGS 295
+ + V+ I S L+ I R + LV + K E++ +Q
Sbjct: 163 LNNN---KLKNGHVM--IQSFSDESLKKIH-RQNKHV-PLVK-LVDKGELQQFNDQ---- 210
Query: 296 LLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPIS 355
L I+++A G+ + V
Sbjct: 211 ---RLKEIRSYAIGLGPDYTDLTE-----------QNTHHLKDLGFIVHP---------- 246
Query: 356 FNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385
Y+ + + L G VDGV ++F
Sbjct: 247 --YTVNEKADMLRLNKYG---VDGVFTNFA 271
|
| >3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482} Length = 278 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 6e-14
Identities = 48/303 (15%), Positives = 97/303 (32%), Gaps = 58/303 (19%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL--SFINLINSTNAAQSKFNS 472
G P + A AI+ VD ++ +Q +KDG + + ++
Sbjct: 25 GNWRSAPENSTAAIDSAIAMKVDIVEIDIQKTKDGQLILMHDNTLDR------------- 71
Query: 473 ITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLE 532
TTT G G + +I+ L ++ + K + P L + L
Sbjct: 72 -TTT------GKGEIK-NWTLADIKKL--KLKDKDGKVTNYVVP---------TLEEALL 112
Query: 533 MAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVL 592
AK ++++++ A + + V L Q V+++
Sbjct: 113 TAKG-----KIMVNLDKAYDIFDD--------VYAILEKTETQNQ----VIMKGGQPIET 155
Query: 593 MKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT-DIV 651
+K RE SY I + + I + + + + + + + + +
Sbjct: 156 VK-REFGSYLDKVLYMPVIDLGNKEAEKIITDYLKEL---RPAAFEIIYSDPKNPLPPKI 211
Query: 652 QRLQSFKLPVYVETFSNEFVSQAWD--FFSDPTVEINTYYEGAGIDGVITEFPMTAARYR 709
++L K ++ T D +DP E G + T+ P Y
Sbjct: 212 KQLLFKKSLIWYNTLWGSLAGNHDDNLALTDPEKSYGYLIEQLGARILQTDQPAYLLDYL 271
Query: 710 RNR 712
R +
Sbjct: 272 RKK 274
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 4e-13
Identities = 63/392 (16%), Positives = 113/392 (28%), Gaps = 129/392 (32%)
Query: 4 TYMTT----------PPNATH-SFCSLSLSLSKEEKSRTFIKRIGGAPAELNLSEMCNTR 52
+TT TH S S++L+ +E +K + P +L E+ T
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-REVLTTN 326
Query: 53 ALGLLLVSALVVLHCGVIAQVSAQGSNATSRWQTLTGD-------------PPFVVARGG 99
+IA+ G W+ + D P R
Sbjct: 327 PR-----------RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY-RKM 374
Query: 100 FS--GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKT 157
F +FP S+ I L ++W DV + + KL S + +
Sbjct: 375 FDRLSVFPPSAHIPTI-LL------SLIWFDVIKSDVMVVVN----KLHKYSLVEK---- 419
Query: 158 QQKNYLVNGVPTPGWFSIDYTLNDLS--------------NIILNQGVYSRTDKFDGNGF 203
Q K ++ + I++ Y+ FD +
Sbjct: 420 QPKEST-------------ISIPSIYLELKVKLENEYALHRSIVDH--YNIPKTFDSDDL 464
Query: 204 QILTVQDMARQIKPP--GLWLN-IQHDAFYAQHNLSMRSFVLSVSRSVVVNYISSPEVNF 260
I P + + I H +H M F R V +++ F
Sbjct: 465 -----------IPPYLDQYFYSHIGHHLKNIEHPERMTLF-----RMVFLDF------RF 502
Query: 261 LR------SIAARFRPSMTKLV--FRFLGK--SEIEPTTNQTYGSLLKNLTFIKTFASGI 310
L S A S+ + +F + +P + ++L F+ +
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD---FLPKIEENL 559
Query: 311 LVPK--DYIWPVDESLYLL-PHTTIVLDAHKE 339
+ K D + + L+ I +AHK+
Sbjct: 560 ICSKYTDLL-----RIALMAEDEAIFEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 4e-09
Identities = 54/422 (12%), Positives = 116/422 (27%), Gaps = 108/422 (25%)
Query: 337 HKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAA---VD 393
+K+ L VF F ++ D LS +D ++ S
Sbjct: 18 YKDILSVFEDAFVDN--FDCKDVQDMPKSILS-----KEEIDHIIMS-KDAVSGTLRLFW 69
Query: 394 CFAHLGKNASKSANLLVISKNGASGDYP---SCTNLAYQKAISDGVDFIDCPVQMSKDGV 450
+ + V+ N Y S ++ +I+ ++ D
Sbjct: 70 TLLSKQEEMVQKFVEEVLRIN-----YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 451 PFCLSFINLINSTNAAQSKFNSITTTIPEI----------MAGSG--------------- 485
F ++ + + + + E+ + GSG
Sbjct: 125 VFAKYNVSRL-------QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 486 -IFSFSLIW-------------DEIQTLIPQISNPYFK--FKLFRNPKNKNAGKFMKLSD 529
F + W + +Q L+ QI + ++ + +L
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRR 236
Query: 530 FLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNS-VMEALGNAGYNKQTALKVMIQSTD 588
L+ N L L+ L V N+ A + K+++ +
Sbjct: 237 LLKSKPYENCL---LV-------LLN-----VQNAKAWNAFNL-------SCKILLTTRF 274
Query: 589 SSVLMKLREKTSYELVYKVKENIRDALN--QTIEDIKKFADSVV--LSKE--SVYPLNSA 642
V L T+ + ++ L + + K+ D L +E + P +
Sbjct: 275 KQVTDFLSAATTTHISL---DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 643 FI-TSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGI--DGV-I 698
I S D + ++K V + + + + +P E ++ + I
Sbjct: 332 IIAESIRDGLATWDNWKH-VNCDKL-TTIIESSLNVL-EPA-EYRKMFDRLSVFPPSAHI 387
Query: 699 TE 700
Sbjct: 388 PT 389
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 5e-09
Identities = 75/516 (14%), Positives = 142/516 (27%), Gaps = 163/516 (31%)
Query: 357 NYSY-DPLTEYL-SFIDNGDFSVDGVLSDFP---LTPSAAVDCFAHLGKNASKSANLL-V 410
Y Y D L+ + +F+D +F V D P L+ +D S + L
Sbjct: 15 QYQYKDILSVFEDAFVD--NFDCKDVQ-DMPKSILS-KEEIDHIIMSKDAVSGTLRLFWT 70
Query: 411 ISKNGASG-----------DYP---SCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSF 456
+ +Y S ++ +I+ ++ D F
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 457 INLINSTNAAQSKFNSITTTIPEI----------MAGSG----------------IFSFS 490
++ + + + + E+ + GSG F
Sbjct: 131 VSRL-------QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 491 LIW-------------DEIQTLIPQISNPYFK--FKLFRNPKNKNAGKFMKLSDFLEMAK 535
+ W + +Q L+ QI + ++ + +L L+
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKSKP 242
Query: 536 NANSLSGVLI-------SIENAVYLAEKQGMSVT---NSVMEALGNA------------G 573
N L L+ NA L+ K + +T V + L A
Sbjct: 243 YENCL---LVLLNVQNAKAWNAFNLSCK--ILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 574 YNKQTALKVMIQSTDSSVLMKLRE---KTSYELVYKVKENIRDALNQTIE-----DIKKF 625
++++ D L T+ + + E+IRD L T + + K
Sbjct: 298 LTPDEVKSLLLKYLDCRP-QDLPREVLTTNPRRLSIIAESIRDGLA-TWDNWKHVNCDKL 355
Query: 626 ADSVVLSKE--------------SVYPLNSAFITSAT--------------DIVQRLQSF 657
+ S SV+P SA I + +V +L +
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFP-PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 658 KLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRRNRCLKRG 717
L VE E + + V++ Y + I + Y +
Sbjct: 415 SL---VEKQPKESTISIPSIYLELKVKLENEYA---LHRSIVD------HYNIPKTFDSD 462
Query: 718 DKTPPY------------MNPVQPGGLLPLITSDYL 741
D PPY + ++ + L +L
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 4e-04
Identities = 59/411 (14%), Positives = 123/411 (29%), Gaps = 102/411 (24%)
Query: 425 NLAYQKAISDGVD-FI---DCP-VQMSKDGVPFCLS---FINLINSTNAAQSKFNSITT- 475
Y+ +S D F+ DC VQ + LS ++I S +A T
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSI---LSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 476 ------TIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSD 529
+ + + ++ + I+T Q S + R+ + F K
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-- 129
Query: 530 FLEMAKNANSLSGVLISIENAVYLAEKQGM-----SVTNSVMEALGNAGYNKQTALKV-- 582
+ + L L+ + A + G+ + ++ + + K+
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVL-IDGVLGSGKTWV--ALDVCLSYKVQCKMDFKIFW 186
Query: 583 --MIQSTDSSVLMKLREKTSYELV--YKVKENIRDALNQTIEDIKKFADSVVLSKESVYP 638
+ ++++ +K Y++ + + + + I I+ ++ SK Y
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP--YE 244
Query: 639 LNS--------------AF-------IT----SATDIVQRLQSFKLPV--YVETFSNEFV 671
N AF +T TD + + + + + T + +
Sbjct: 245 -NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-- 301
Query: 672 SQAWDFFSD---------P--TVEINTYYEGAGIDGVITEFPMTAARYRRNRCLKRGDKT 720
+ P + N + I I + T ++ C DK
Sbjct: 302 -EVKSLLLKYLDCRPQDLPREVLTTNPRRL-SIIAESIRDGLATWDNWKHVNC----DK- 354
Query: 721 PPYMNPVQPGGLLPLITS--DYLPPAEAPNPILTEAAVTEPPLPPVTPVPS 769
L +I S + L PAE + +V PP +P+
Sbjct: 355 -----------LTTIIESSLNVLEPAEY-RKMFDRLSV----FPPSAHIPT 389
|
| >3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406} Length = 272 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 7e-12
Identities = 48/306 (15%), Positives = 94/306 (30%), Gaps = 73/306 (23%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSIT 474
G G P T A+ KA+ GV ++ + +SKD +
Sbjct: 16 GCRGLLPENTIAAFTKALLLGVTTLEFDLVISKDNRVVVSHDTFFHHEITM-----MVDG 70
Query: 475 TTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKF----MKLSDF 530
+ E + ++ + +I+ + + +P+ K+ K +
Sbjct: 71 EDVTEANEKNFNLY-AMNYADIKEI---------DVGMKTHPRFKSQKKVPAVKPLFREL 120
Query: 531 LEMAKNANSLSGVLISIE-----NAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQ 585
+E A+ + + + + E + + V+ + A + +Q
Sbjct: 121 IETAEKLS--AKIQYNGEIKSTVEGDNIDHPNIALFCDLVVAEIKKAHITDR----FTLQ 174
Query: 586 STDSSVLMKLRE-----KTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLN 640
S D L + K SY LV + L + +E + VY +
Sbjct: 175 SFDVRALEYMHSQYPDIKLSY-LVET-----KGTLKKQLEKLSFTPA--------VYSPD 220
Query: 641 SAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTV----EINTYYEGAGIDG 696
++ + + V W TV EI T G+DG
Sbjct: 221 VTLVSKK--DIDAAHKLGMRVIP-----------W------TVNTKEEIETLIS-LGVDG 260
Query: 697 VITEFP 702
+IT++P
Sbjct: 261 IITDYP 266
|
| >3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis} Length = 292 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 7e-12
Identities = 44/354 (12%), Positives = 104/354 (29%), Gaps = 79/354 (22%)
Query: 376 SVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDG 435
+VD ++S + H G G YP + ++ +S
Sbjct: 16 NVDDLISFYQYADDRIPLISGHRG---------------GRGKGYPENSMETFENTLSYT 60
Query: 436 VDFIDCPVQMSKDGVPFCL--SFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIW 493
+ +++KD V + T+ G+G S W
Sbjct: 61 PATFEIDPRLTKDSVIVLFHDDTLER--------------TSN------GTGKVS-DYTW 99
Query: 494 DEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYL 553
+E+Q ++ +P +R P L + + A+ ++ ++
Sbjct: 100 EELQNF--RLKDPEGNITNYRIP---------TLEEAIRWARGK-----TILILDKKDVP 143
Query: 554 AEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRD 613
E+ + + + VMI D + E K + +
Sbjct: 144 MER--------TAQLITDMQAEPY----VMITVHDGASARFFYE--------KNPNFMFE 183
Query: 614 ALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQ 673
A +T E ++ + D+ + + + +++ L + + T ++ +
Sbjct: 184 AFVKTKEAVQDYEDNGIPWSHIMAYVGPKITPEVREVIDMLHERGVMCMISTAPSD--DK 241
Query: 674 AWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRRNRCLKRGDKTPPYMNPV 727
S E G+D + ++ P+ A + K + + +
Sbjct: 242 LSTPESRA--EAYRMIIRQGVDIIESDRPIEVAEAISSLIPVSSSK-GKFFSTL 292
|
| >2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria} Length = 258 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 3e-11
Identities = 32/309 (10%), Positives = 77/309 (24%), Gaps = 79/309 (25%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL---SFINLINSTNAAQSKFN 471
G G P T ++ + + +I+ +++ K G + +
Sbjct: 16 GKEGLAPENTLRSFVLCMERNIPYIETDLRVCKTGEIVLFHGTPEGTIPFYKD------- 68
Query: 472 SITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAG---KFMKLS 528
G+ L +E++ L + G L
Sbjct: 69 -----------GTSRIG-DLSLEELKRL--------------------DVGGGHTIPSLE 96
Query: 529 DFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD 588
+ + + + ++ + ++ G ++ + ++ V S
Sbjct: 97 ELFVAIEEQKFNLKLNLELKGEEWKRKESGD--HQRLLLLVEKYHMQER----VDYCSFH 150
Query: 589 SSVLMKLRE-----KTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAF 643
L L+ K +Y L + + + A+ V + +
Sbjct: 151 HEALAHLKALCPDVKITY-LFNYMGQPTPLDFVEQACYGD--ANGVSMLFHYLTK----- 202
Query: 644 ITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPM 703
+ V L V V D + E +D + + +P
Sbjct: 203 -----EQVCTAHEKGLSVTVWM-----PWIFDD---SEE-DWKKCLE-LQVDLICSNYPF 247
Query: 704 TAARYRRNR 712
+ N
Sbjct: 248 GLMNFLSNI 256
|
| >2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis} Length = 252 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 4e-10
Identities = 50/311 (16%), Positives = 106/311 (34%), Gaps = 91/311 (29%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL--SFINLINSTNAAQSKFNS 472
G S + P T A+++A+ G D I+ VQ++KDG + ++
Sbjct: 19 GDSKNVPENTIAAFKRAMELGADGIELDVQLTKDGHLVVIHDETVD-------------- 64
Query: 473 ITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLE 532
TT G G +EI+ L + K + L + E
Sbjct: 65 RTTN------GEGFVK-DFTLEEIKKL---------DAGIKFGEKFAGE-RIPTLYEVFE 107
Query: 533 MAKNANSLSGVLISIE------NAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQS 586
+ + L++IE + EK +++A+ + ++ V+I S
Sbjct: 108 LIGD----KDFLVNIEIKSGIVLYPGIEEK--------LIKAIKEYNFEER----VIISS 151
Query: 587 TDSSVLMKLREKT-SYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFIT 645
+ L +++ ++ + + + + + A S+ ++ P
Sbjct: 152 FNHYSLRDVKKMAPHLKIGLLYQCGLVEPWHMALR---MEAYSLHPFYFNIIP------- 201
Query: 646 SATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTV----EINTYYEGAGIDGVITEF 701
++V+ + + ++ W TV ++ + AG+DG+IT+
Sbjct: 202 ---ELVEGCKKNGVKLFP-----------W------TVDRKEDMERMIK-AGVDGIITDD 240
Query: 702 PMTAARYRRNR 712
P T R
Sbjct: 241 PETLINLVRKG 251
|
| >3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica} Length = 252 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 2e-09
Identities = 38/310 (12%), Positives = 89/310 (28%), Gaps = 90/310 (29%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL--SFINLINSTNAAQSKFNS 472
G+SG P T + A G+ +++ V +S DG+P +++
Sbjct: 17 GSSGQAPENTLASLHLAGQQGIKWVEIDVMLSGDGIPVIFHDDYLS-------------- 62
Query: 473 ITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLE 532
TT G G+ E++ L ++ + + L + +E
Sbjct: 63 RTTD------GDGLIY-KTPLAELKQL---------DAGSWKGQEYQQE-TIPTLLEAIE 105
Query: 533 MAKNANSLSGVLISIE--NAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSS 590
+ G+ +++E L E+ + + + + L ++ S +
Sbjct: 106 VISQ----YGMGLNLELKPCEGLEEETIAASVEVLKQ-------HWPQDLPLLFSSFNYF 154
Query: 591 VLMKLRE-----KTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFIT 645
L+ + Y V + ++ L + + +
Sbjct: 155 ALVSAKALWPEIARGY-NVSAIPSAWQERLEHL------DCAGLHIHQSFFDV------- 200
Query: 646 SATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTV----EINTYYEGAGIDGVITEF 701
V +++ V + T+ Y G+D V +++
Sbjct: 201 ---QQVSDIKAAGYKVLA-----------F------TINDESLALKLYN-QGLDAVFSDY 239
Query: 702 PMTAARYRRN 711
P +
Sbjct: 240 PQKIQSAIDS 249
|
| >1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3 Length = 234 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 48/296 (16%), Positives = 92/296 (31%), Gaps = 96/296 (32%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFI---NLINSTNAAQSKFN 471
G S Y T A+ KAI G + ++ V++SKDG +L
Sbjct: 20 GYSAKYLENTLEAFMKAIEAGANGVELDVRLSKDGKVVV---SHDEDLKRLFG------- 69
Query: 472 SITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFL 531
E++ L GK L +
Sbjct: 70 -----------LDVKIR-DATVSELKEL--------------------TDGKITTLKEVF 97
Query: 532 EMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSV 591
E + +I+IE + E++ ++V+E ++ S D +
Sbjct: 98 ENVSD-----DKIINIE----IKERE---AADAVLEISKKRK-------NLIFSSFDLDL 138
Query: 592 LMKLRE--KTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATD 649
L + + K Y L+ + + + +E + ++ V P + + A +
Sbjct: 139 LDEKFKGTKYGY-LIDEENYGSIENFVERVEKERPYSLHV--------PYQAFELEYAVE 189
Query: 650 IVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTV---EINTYYEGAGIDGVITEFP 702
+++ + + ++V W T+ EI IDGVIT+
Sbjct: 190 VLRSFRKKGIVIFV-----------W------TLNDPEIYRKIR-REIDGVITDEV 227
|
| >3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} Length = 238 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 6e-09
Identities = 34/311 (10%), Positives = 76/311 (24%), Gaps = 103/311 (33%)
Query: 416 ASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL--SFINLINSTNAAQSKFNSI 473
+ + + ++A G + V ++ D V + I
Sbjct: 15 KTEGSAQNSIRSLERASEIGAYGSEFDVHLTADNVLVVYHDNDIQ--------------- 59
Query: 474 TTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAG---KFMKLSDF 530
I +DE++ L K L +
Sbjct: 60 GKHIQS-----------CTYDELKDL--------------------QLSNGEKLPTLEQY 88
Query: 531 LEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSS 590
L+ AK L + + E + ++ ++ + K+ S +
Sbjct: 89 LKRAKK---LKNIRLIFELKSHDTPERNRDAARLSVQMVKRMKLAKR----TDYISFNMD 141
Query: 591 VLMKLRE-----KTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFIT 645
+ + SY L + ++++ +P
Sbjct: 142 ACKEFIRLCPKSEVSY-LN-------GELSPMELKELGFTGLDYHYKVLQSHP------- 186
Query: 646 SATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTV----EINTYYEGAGIDGVITEF 701
D V+ + + V W TV + + G+D + T+
Sbjct: 187 ---DWVKDCKVLGMTSNV-----------W------TVDDPKLMEEMID-MGVDFITTDL 225
Query: 702 PMTAARYRRNR 712
P + +R
Sbjct: 226 PEETQKILHSR 236
|
| >3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A* Length = 250 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 2e-08
Identities = 28/315 (8%), Positives = 76/315 (24%), Gaps = 97/315 (30%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSI- 473
G + ++ T + + ++ ++ + + DG
Sbjct: 10 GGTLEFGDSTPHGFTATAAMALEEVEFDLHPTADGAIVV-------------------HH 50
Query: 474 ------TTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKF--- 524
TT +G + +++T
Sbjct: 51 DPTLDATTD------MTGAIV-DMTLAKVKTA--------------------TIRYGAGS 83
Query: 525 --MKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKV 582
M L + + +++ I+ V +G V+ L ++
Sbjct: 84 HPMTLEELCALYVDSH--VNFRCEIKPGVDGLPYEGF--VALVIAGLERHSMLER----T 135
Query: 583 MIQSTDSSVLMKLREKTS-YELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNS 641
S + + +L + T+ L ++ + + + ++
Sbjct: 136 TFSSFLLASMDELWKATTRPRLWLVSPSVLQQLGPGAVIETAIAHSIHEIG------VHI 189
Query: 642 AFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTV----EINTYYEGAGIDGV 697
+ ++ ++Q+ L W +I + G+
Sbjct: 190 DTADAG--LMAQVQAAGLDFGC-----------W------AAHTPSQITKALD-LGVKVF 229
Query: 698 ITEFPMTAARYRRNR 712
T+ P A R
Sbjct: 230 TTDRPTLAIALRTEH 244
|
| >2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri} Length = 247 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 4e-08
Identities = 40/306 (13%), Positives = 82/306 (26%), Gaps = 100/306 (32%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSI- 473
G P T A G I+ ++SKDG F +
Sbjct: 14 GGGKLAPENTLAAIDVGAKYGHKMIEFDAKLSKDGEIFL-------------------LH 54
Query: 474 ------TTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKL 527
T+ G G+ L W ++ + + + K L
Sbjct: 55 DDNLERTSN------GWGVAG-ELNWQDLLRV---------DAGSWYSKAFKGE-PLPLL 97
Query: 528 SDFLEMAKNANSLSGVLISIE--NAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQ 585
S E + G++ +IE +T ++ + T ++
Sbjct: 98 SQVAERCRE----HGMMANIEIKPTTGTGP-----LTGKMVALAARQLWAGMT--PPLLS 146
Query: 586 STDSSVLMKLRE-----KTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLN 640
S + L ++ L+ + +++ R+ + S+ L+ + +
Sbjct: 147 SFEIDALEAAQQAAPELPRGL-LLDEWRDDWRELTARL------GCVSIHLNHKLLDK-- 197
Query: 641 SAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTV----EINTYYEGAGIDG 696
V +L+ L + V + TV G+D
Sbjct: 198 --------ARVMQLKDAGLRILV-----------Y------TVNKPQHAAELLR-WGVDC 231
Query: 697 VITEFP 702
+ T+
Sbjct: 232 ICTDAI 237
|
| >1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3 Length = 248 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 44/314 (14%), Positives = 80/314 (25%), Gaps = 103/314 (32%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSI- 473
GA+ P T A A+ G D+I+ V+ S DGV + I
Sbjct: 9 GANRFAPENTFAAADLALQQGADYIELDVRESADGVLYV-------------------IH 49
Query: 474 ------TTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKL 527
TT G+G ++ EI TL + + + K A +L
Sbjct: 50 DETLDRTTN------GTGPVG-HMLSSEIDTL---------DAGGWFDDRFKGA-IVPRL 92
Query: 528 SDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQST 587
+LE + + IE K V + + G + S
Sbjct: 93 DAYLEHLRG-----RAGVYIELKYCDPAK--------VAALVRHLGMVRD----TFYFSF 135
Query: 588 DSSVLMKLRE-----KTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSA 642
+ L+ + + K A + +
Sbjct: 136 SEEMRQGLQSIAPEFRRMM-TLDIAKSPSLVGA-------VHHASIIE-------ITPAQ 180
Query: 643 FITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTV----EINTYYEGAGIDGVI 698
I++ + L + V + ++ + +D +
Sbjct: 181 MRRPG--IIEASRKAGLEIMV-----------Y------YGGDDMAVHREIATSDVDYIN 221
Query: 699 TEFPMTAARYRRNR 712
+ P A R
Sbjct: 222 LDRPDLFAAVRSGM 235
|
| >1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A Length = 224 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 4e-06
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL 454
GA T +++ A+ G+D ++ V ++DGV
Sbjct: 15 GAPLKAKENTLESFRLALEAGLDGVELDVWPTRDGVFAVR 54
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 811 | ||||
| d1ydya1 | 328 | c.1.18.3 (A:29-356) Glycerophosphodiester phosphod | 5e-30 | |
| d1ydya1 | 328 | c.1.18.3 (A:29-356) Glycerophosphodiester phosphod | 6e-23 | |
| d1zcca1 | 240 | c.1.18.3 (A:1-240) Glycerophosphodiester phosphodi | 6e-11 | |
| d1zcca1 | 240 | c.1.18.3 (A:1-240) Glycerophosphodiester phosphodi | 0.004 | |
| d1zcca1 | 240 | c.1.18.3 (A:1-240) Glycerophosphodiester phosphodi | 0.004 | |
| d1o1za_ | 226 | c.1.18.3 (A:) Hypothetical protein TM1621 {Thermot | 3e-10 | |
| d1o1za_ | 226 | c.1.18.3 (A:) Hypothetical protein TM1621 {Thermot | 0.004 | |
| d1vd6a1 | 217 | c.1.18.3 (A:8-224) Putative glycerophosphodiester | 2e-09 | |
| d1vd6a1 | 217 | c.1.18.3 (A:8-224) Putative glycerophosphodiester | 0.002 |
| >d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase GlpQ species: Escherichia coli [TaxId: 562]
Score = 119 bits (298), Expect = 5e-30
Identities = 62/329 (18%), Positives = 114/329 (34%), Gaps = 35/329 (10%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
+VI+ GASG P T A A + G D+++ + M+KD L L T+ A
Sbjct: 4 IVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVAD- 62
Query: 469 KFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLS 528
+F A + + R P K+ +
Sbjct: 63 RFPDRARKDGRYYAIDFTLDEIKSLK-FTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFE 121
Query: 529 DFLEMAKNANSLSGVLISIENAV---YLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQ 585
+ +E + N +G I I + + ++G + +E L GY + KV +Q
Sbjct: 122 EEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDD-KVYLQ 180
Query: 586 STDSSVLMKLREK------TSYELVYKVKENIRDALNQTIED------------------ 621
D+ L +++ + LV + + Q D
Sbjct: 181 CFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMK 240
Query: 622 -IKKFADSVVLSKESVYPLNSAFITSAT-DIVQRLQSFKLPVYVETFSNEFVSQAWDFFS 679
+ ++AD + + S +VQ Q KL V+ T ++ + ++
Sbjct: 241 QVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSD---KLPEYTP 297
Query: 680 DPTVEINTYYEGAGIDGVITEFPMTAARY 708
D + Y AG++G+ T+FP A ++
Sbjct: 298 DVNQLYDALYNKAGVNGLFTDFPDKAVKF 326
|
| >d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase GlpQ species: Escherichia coli [TaxId: 562]
Score = 98.6 bits (244), Expect = 6e-23
Identities = 59/326 (18%), Positives = 109/326 (33%), Gaps = 36/326 (11%)
Query: 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNAS 149
+ V+A G SG P+ + A ++ A L D+ +TKD+ + D LD +
Sbjct: 1 NEKIVIAHRGASGYLPEHTLPAKAMAYAQGAD--YLEQDLVMTKDDNLVVLHDHYLDRVT 58
Query: 150 NIAQIFKTQQK---NYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQIL 206
++A F + + Y S+ +T Y + F++
Sbjct: 59 DVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVH 118
Query: 207 TVQDMARQI--------KPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVN------Y 252
T ++ + K G++ I+ F+ Q + + L V + Y
Sbjct: 119 TFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVY 178
Query: 253 ISSPEVNFLRSIAARFRP---SMTKLVFRFLGKSEIEPTTNQTYGSLL----------KN 299
+ + + L+ I P LV E Q GS +
Sbjct: 179 LQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGA 238
Query: 300 LTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYS 359
+ + +A GI + + T +V DA + +L V +D Y+
Sbjct: 239 MKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKL--PEYT 296
Query: 360 YDPLTEYLSFIDNGDFSVDGVLSDFP 385
D Y + + V+G+ +DFP
Sbjct: 297 PDVNQLYDALYN--KAGVNGLFTDFP 320
|
| >d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase UgpQ species: Agrobacterium tumefaciens [TaxId: 358]
Score = 61.2 bits (147), Expect = 6e-11
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFC 453
++S GA+ P T A A+ G D+I+ V+ S DGV +
Sbjct: 4 IVSHRGANRFAPENTFAAADLALQQGADYIELDVRESADGVLYV 47
|
| >d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase UgpQ species: Agrobacterium tumefaciens [TaxId: 358]
Score = 37.3 bits (85), Expect = 0.004
Identities = 11/103 (10%), Positives = 31/103 (30%), Gaps = 14/103 (13%)
Query: 608 KENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFS 667
T++ K + + S+ + A + I++ + L + V
Sbjct: 145 SIAPEFRRMMTLDIAKSPSLVGAVHHASIIEITPAQMRRP-GIIEASRKAGLEIMVYYGG 203
Query: 668 NEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRR 710
++ + ++ + +D + + P A R
Sbjct: 204 DD-------------MAVHREIATSDVDYINLDRPDLFAAVRS 233
|
| >d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase UgpQ species: Agrobacterium tumefaciens [TaxId: 358]
Score = 37.3 bits (85), Expect = 0.004
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQ 153
+V+ G + P+++ A L L A + DV+ + D D LD +N
Sbjct: 4 IVSHRGANRFAPENTFAAADLALQQGAD--YIELDVRESADGVLYVIHDETLDRTTNGTG 61
Query: 154 IFKTQQKNYLVNGVPTPGWFSIDY 177
+ + + + GWF +
Sbjct: 62 PVGHMLSSEI-DTLDAGGWFDDRF 84
|
| >d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Hypothetical protein TM1621 species: Thermotoga maritima [TaxId: 2336]
Score = 58.5 bits (140), Expect = 3e-10
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFC 453
+V+ G S Y T A+ KAI G + ++ V++SKDG
Sbjct: 6 IVLGHRGYSAKYLENTLEAFMKAIEAGANGVELDVRLSKDGKVVV 50
|
| >d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Hypothetical protein TM1621 species: Thermotoga maritima [TaxId: 2336]
Score = 37.4 bits (85), Expect = 0.004
Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 2/100 (2%)
Query: 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNAS 149
V+ G+S + +++ A+ + A + DV+L+KD + D L
Sbjct: 3 HHVIVLGHRGYSAKYLENTLEAFMKAIEAGAN--GVELDVRLSKDGKVVVSHDEDLKRLF 60
Query: 150 NIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQ 189
+ + + L + N + I+N
Sbjct: 61 GLDVKIRDATVSELKELTDGKITTLKEVFENVSDDKIINI 100
|
| >d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Putative glycerophosphodiester phosphodiesterase TTHB141 species: Thermus thermophilus [TaxId: 274]
Score = 56.5 bits (135), Expect = 2e-09
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFC 453
L + GA T +++ A+ G+D ++ V ++DGV
Sbjct: 2 LRLGHRGAPLKAKENTLESFRLALEAGLDGVELDVWPTRDGVFAV 46
|
| >d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Putative glycerophosphodiester phosphodiesterase TTHB141 species: Thermus thermophilus [TaxId: 274]
Score = 38.4 bits (88), Expect = 0.002
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Query: 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLD 146
P + G +++ ++ L L + DV T+D D
Sbjct: 1 PLRLGHRGAPLKAKENTLESFRLALEAGLD--GVELDVWPTRDGVFAVRHDPDTP 53
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 811 | |||
| d1ydya1 | 328 | Glycerophosphodiester phosphodiesterase GlpQ {Esch | 100.0 | |
| d1ydya1 | 328 | Glycerophosphodiester phosphodiesterase GlpQ {Esch | 100.0 | |
| d1zcca1 | 240 | Glycerophosphodiester phosphodiesterase UgpQ {Agro | 100.0 | |
| d1o1za_ | 226 | Hypothetical protein TM1621 {Thermotoga maritima [ | 100.0 | |
| d1zcca1 | 240 | Glycerophosphodiester phosphodiesterase UgpQ {Agro | 100.0 | |
| d1o1za_ | 226 | Hypothetical protein TM1621 {Thermotoga maritima [ | 100.0 | |
| d1vd6a1 | 217 | Putative glycerophosphodiester phosphodiesterase T | 100.0 | |
| d1vd6a1 | 217 | Putative glycerophosphodiester phosphodiesterase T | 100.0 | |
| d1qasa3 | 327 | Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus n | 96.87 | |
| d2zkmx4 | 349 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 96.51 | |
| d1qasa3 | 327 | Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus n | 95.92 | |
| d2zkmx4 | 349 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 94.74 | |
| d1vkfa_ | 172 | Glycerol uptake operon antiterminator-related prot | 92.43 | |
| d1a3xa2 | 265 | Pyruvate kinase, N-terminal domain {Baker's yeast | 81.95 |
| >d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase GlpQ species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=346.92 Aligned_cols=291 Identities=21% Similarity=0.244 Sum_probs=217.8
Q ss_pred CCEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 52232389879999993699999999879995634664136991898306863355666877678864444455567653
Q 003550 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGI 486 (811)
Q Consensus 407 ~plIIaHRG~sg~~PENT~~Af~~A~~~Gad~IE~DVqlTKDGv~Vi~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~ 486 (811)
+++||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|.|+|+++...... ....+.|
T Consensus 2 ~~liIaHRG~~~~~PENTl~af~~A~~~gad~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~------~~~~~~~- 74 (328)
T d1ydya1 2 EKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDR------ARKDGRY- 74 (328)
T ss_dssp CCEEEETTTTTTTSSTTCHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSSBCTTTBSHHHHSTTC------CCTTSCC-
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCEEEECCCHHHCCCCCCCCCCCC------CCCCCCC-
T ss_conf 978995899888997447999999998697999985428459968997986220102887775544------3457872-
Q ss_pred CCCCCCHHHHHCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCHHHHHHHHHHC----CCCCEEEEEECCHHHHHHHC
Q ss_conf 33477988880328665587643-----3345796787788788989999999824----89751999741214787520
Q 003550 487 FSFSLIWDEIQTLIPQISNPYFK-----FKLFRNPKNKNAGKFMKLSDFLEMAKNA----NSLSGVLISIENAVYLAEKQ 557 (811)
Q Consensus 487 ~i~dlT~~EL~~L~~~~~~p~~~-----~~~~~n~~~~~~~~iptL~EvL~~~k~~----~~~~gi~IeIK~~~~~~~~~ 557 (811)
.+.++||+||++|+.+.+..... ....+.+......+||||+|+++.+++. +...++++|+|.+....+ .
T Consensus 75 ~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iptL~~~~~~~~~~~~~~~~~~~~~iEiK~~~~~~~-~ 153 (328)
T d1ydya1 75 YAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQ-E 153 (328)
T ss_dssp BGGGSCHHHHHHSCBCSCEEEETTEEEESSTTSSCTTCSCCCCCBHHHHHHHHHHHHHHHSCCCEEEEEECCHHHHHH-T
T ss_pred EEEECCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHH-C
T ss_conf 155124544214464335666555432224443434578865575999999998876630777414433678510111-1
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHC------CCCEEEEEECCCC-------------------C
Q ss_conf 76099999999996199978883799980994799998723------4962999971520-------------------0
Q 003550 558 GMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK------TSYELVYKVKENI-------------------R 612 (811)
Q Consensus 558 g~~~~~~v~~~L~~~~~~~~~~~~ViiqSfd~~~L~~lk~~------~~~~~~~li~~~~-------------------~ 612 (811)
+..+++.+..++.+++..... ++|+++||++++++.++.. +.++++.++.... .
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~SF~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (328)
T d1ydya1 154 GKDIAAKTLEVLKKYGYTGKD-DKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDW 232 (328)
T ss_dssp TCCHHHHHHHHHHHTTCCSTT-SSBEEEESCHHHHHHHHHTHHHHHTCCCEEEEEECCGGGCCCEEECTTSCEEECCCGG
T ss_pred CHHHHHHHHHHHHHHCCCCCC-CEEEEEECCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHCCCCCCCCCCCCCHHH
T ss_conf 302677788899996014788-6499982678999999987084434333225541235410000024443223432254
Q ss_pred HHCHHHHHHHHHHHHHHCCCCCEEECCCC-CCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 00157699999764250456530103885-33578999999999769949999149941246555689919999999984
Q 003550 613 DALNQTIEDIKKFADSVVLSKESVYPLNS-AFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEG 691 (811)
Q Consensus 613 d~~~~~l~~i~~~a~~v~~~~~~i~p~~~-~~l~~~~~lV~~l~~~GL~V~vwt~nne~~~~~~~~~~d~~~e~~~~~~~ 691 (811)
...+..+..++.+++++++++..+.+... ......+.+|+++|++|+.|++||+|++. .+++..|...++...+.+
T Consensus 233 ~~~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~gl~v~~wTvn~~~---~~~~~~d~~~~~~~~~~~ 309 (328)
T d1ydya1 233 MFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDK---LPEYTPDVNQLYDALYNK 309 (328)
T ss_dssp GGSTTHHHHHTTTCSEEEEBGGGTBCTTCBTTBCCBCSHHHHHHHTTCEECCBCBCTTS---CCTTCSSHHHHHHHHHTT
T ss_pred HCCHHHHHHHHHHCCEEECCHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCHH---HHHHCCCHHHHHHHHHHH
T ss_conf 31716689998627763122642364224664458999999999879999997658868---866424799999999987
Q ss_pred CCCCEEEECCHHHHHHHH
Q ss_conf 298899919959999999
Q 003550 692 AGIDGVITEFPMTAARYR 709 (811)
Q Consensus 692 ~GVDGIiTD~P~~~~~~~ 709 (811)
+||||||||+|+++++|+
T Consensus 310 ~GVDgIiTD~P~~~~~~l 327 (328)
T d1ydya1 310 AGVNGLFTDFPDKAVKFL 327 (328)
T ss_dssp SCCSEEEESCHHHHHHHH
T ss_pred CCCCEEEECCHHHHHHHH
T ss_conf 698599985898999976
|
| >d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase GlpQ species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=336.39 Aligned_cols=289 Identities=21% Similarity=0.311 Sum_probs=223.3
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 99789980999999981089999999981999728996312406990998149988887631221002453111279778
Q 003550 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPT 169 (811)
Q Consensus 90 ~~p~viAHRG~~~~~pENTl~a~~~A~~~ga~~~~iE~DVqlTkDgv~V~~HD~~l~~tT~~~~~~~~~~~~y~~~G~~~ 169 (811)
++|+||||||+++.+||||++||+.|++.|+| ++|||||+||||++||+||.+|+|+|++.+.+...... +|
T Consensus 1 ~~~liIaHRG~~~~~PENTl~af~~A~~~gad--~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~---~~--- 72 (328)
T d1ydya1 1 NEKIVIAHRGASGYLPEHTLPAKAMAYAQGAD--YLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARK---DG--- 72 (328)
T ss_dssp CCCEEEETTTTTTTSSTTCHHHHHHHHHTTCS--EEEEEEEECTTSCEEECSSSBCTTTBSHHHHSTTCCCT---TS---
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHCCCC--EEEEEEEECCCCCEEEECCCHHHCCCCCCCCCCCCCCC---CC---
T ss_conf 99789958998889974479999999986979--99985428459968997986220102887775544345---78---
Q ss_pred CCCCCCCCCHHHHCCCCCCCCCC-----------CCCCCCCCCCCCCCCHHHHHHHHC--------CCCEEEEECCCHHH
Q ss_conf 85333346987651551054345-----------789888998754455989998609--------99569911260455
Q 003550 170 PGWFSIDYTLNDLSNIILNQGVY-----------SRTDKFDGNGFQILTVQDMARQIK--------PPGLWLNIQHDAFY 230 (811)
Q Consensus 170 ~g~~~~d~t~~eL~~l~~~~~~~-----------~r~~~~~g~~~~iptLeevl~~~~--------~~~l~leiK~~~~~ 230 (811)
.+.+.++|++||++++++.++. .+...+++ ..+||||+|+++.++ ...+++|+|++.++
T Consensus 73 -~~~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iptL~~~~~~~~~~~~~~~~~~~~~iEiK~~~~~ 150 (328)
T d1ydya1 73 -RYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKS-DFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFH 150 (328)
T ss_dssp -CCBGGGSCHHHHHHSCBCSCEEEETTEEEESSTTSSCTTCS-CCCCCBHHHHHHHHHHHHHHHSCCCEEEEEECCHHHH
T ss_pred -CCEEEECCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHH
T ss_conf -72155124544214464335666555432224443434578-8655759999999988766307774144336785101
Q ss_pred HHCCCHHHHHHHHHHHHCCC------EEEECCCHHHHHHHHHHCCC---CCCCEEEEECCCCC--------CCCCCCCCH
Q ss_conf 40280199999999642283------58936898999999876099---87544565447886--------677864336
Q 003550 231 AQHNLSMRSFVLSVSRSVVV------NYISSPEVNFLRSIAARFRP---SMTKLVFRFLGKSE--------IEPTTNQTY 293 (811)
Q Consensus 231 ~~~~~~~~~~l~~~l~~~~~------~~IsSf~~~~L~~l~~~~p~---~~~~lv~~~~~~~~--------~~~~~~~~y 293 (811)
.+....+++.+..++++++. ++++||+...++.+++..++ ...+++.+...... .....+..|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~SF~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (328)
T d1ydya1 151 HQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNY 230 (328)
T ss_dssp HHTTCCHHHHHHHHHHHTTCCSTTSSBEEEESCHHHHHHHHHTHHHHHTCCCEEEEEECCGGGCCCEEECTTSCEEECCC
T ss_pred HHCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHCCCCCCCCCCCCCH
T ss_conf 11130267778889999601478864999826789999999870844343332255412354100000244432234322
Q ss_pred HHHHH--HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHH-HH
Q ss_conf 78865--1999986131204897520257775667888589999998399599971489987555789994999999-99
Q 003550 294 GSLLK--NLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLS-FI 370 (811)
Q Consensus 294 ~~l~~--~L~~i~~~a~gi~v~~~~i~~~~~~~~l~~~~~lV~~aH~~Gl~V~~wt~~n~~~~~~~y~~D~~~e~~~-~i 370 (811)
..+.. .+..++.++.++.+.+.++.+....+.+...+.+|+.||++|+.|++||||++.. +.+..|...++.. +.
T Consensus 231 ~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~gl~v~~wTvn~~~~--~~~~~d~~~~~~~~~~ 308 (328)
T d1ydya1 231 DWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKL--PEYTPDVNQLYDALYN 308 (328)
T ss_dssp GGGGSTTHHHHHTTTCSEEEEBGGGTBCTTCBTTBCCBCSHHHHHHHTTCEECCBCBCTTSC--CTTCSSHHHHHHHHHT
T ss_pred HHHCCHHHHHHHHHHCCEEECCHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHH--HHHCCCHHHHHHHHHH
T ss_conf 54317166899986277631226423642246644589999999998799999976588688--6642479999999998
Q ss_pred HCCCCCCCEEECCCCCCCCHHHH
Q ss_conf 76997558274158998501344
Q 003550 371 DNGDFSVDGVLSDFPLTPSAAVD 393 (811)
Q Consensus 371 ~~G~~~VDgIiTD~P~~~~~~~~ 393 (811)
..| ||||+||+|+++.++++
T Consensus 309 ~~G---VDgIiTD~P~~~~~~l~ 328 (328)
T d1ydya1 309 KAG---VNGLFTDFPDKAVKFLN 328 (328)
T ss_dssp TSC---CSEEEESCHHHHHHHHC
T ss_pred HCC---CCEEEECCHHHHHHHHC
T ss_conf 769---85999858989999769
|
| >d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase UgpQ species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=0 Score=332.57 Aligned_cols=233 Identities=18% Similarity=0.192 Sum_probs=186.3
Q ss_pred CEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22323898799999936999999998799956346641369918983068633556668776788644444555676533
Q 003550 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (811)
Q Consensus 408 plIIaHRG~sg~~PENT~~Af~~A~~~Gad~IE~DVqlTKDGv~Vi~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~ 487 (811)
..||||||+++.+||||++||++|++.|+|+||||||+||||++||+||.++.|+|+ ++| .
T Consensus 2 t~iiaHRG~~~~~pENT~~a~~~A~~~G~~~iE~Dv~~TkDg~~Vv~HD~~l~r~t~------------------~~~-~ 62 (240)
T d1zcca1 2 TKIVSHRGANRFAPENTFAAADLALQQGADYIELDVRESADGVLYVIHDETLDRTTN------------------GTG-P 62 (240)
T ss_dssp CEEEETTTTTTTSCSSSHHHHHHHHHTTCSEEEEEEEECTTCCEEECSSSBTTTTSS------------------CCS-B
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCEEEECCCCCCCCCC------------------CCC-C
T ss_conf 889988999999970189999999984989899988991499889953642342124------------------456-6
Q ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCHHHHHHH
Q ss_conf 34779888803286655876433345796787788788989999999824897519997412147875207609999999
Q 003550 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (811)
Q Consensus 488 i~dlT~~EL~~L~~~~~~p~~~~~~~~n~~~~~~~~iptL~EvL~~~k~~~~~~gi~IeIK~~~~~~~~~g~~~~~~v~~ 567 (811)
+.++||+||++|+++.+.. ..+.+ ++||||+|++++++++ .+++||+|... .+.+.+
T Consensus 63 v~~~t~~el~~l~~~~~~~---------~~~~~-~~IptL~evl~~~~~~---~~l~iEiK~~~----------~~~v~~ 119 (240)
T d1zcca1 63 VGHMLSSEIDTLDAGGWFD---------DRFKG-AIVPRLDAYLEHLRGR---AGVYIELKYCD----------PAKVAA 119 (240)
T ss_dssp STTSCHHHHTTSCSSTTTC---------GGGTT-CCCCBHHHHHHHHTTT---CEEEEEEEESC----------HHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCC---------CCCCC-CCCCHHHHHHHCCCCC---CEEEEEECCCC----------CHHHHH
T ss_conf 7774599998765068676---------22279-8677278754224666---10489975686----------125668
Q ss_pred HHHHCCCCCCCCCEEEEEECCHHHHHHHHHC-CCCEEEEEECCCCCHHCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCC
Q ss_conf 9996199978883799980994799998723-496299997152000015769999976425045653010388533578
Q 003550 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITS 646 (811)
Q Consensus 568 ~L~~~~~~~~~~~~ViiqSfd~~~L~~lk~~-~~~~~~~li~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~ 646 (811)
++++++.. ++|+++||+++++..+++. |+++++++++... .........++..+.... ....
T Consensus 120 l~~~~~~~----~~v~~~Sf~~~~l~~~~~~~P~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---------~~~~ 182 (240)
T d1zcca1 120 LVRHLGMV----RDTFYFSFSEEMRQGLQSIAPEFRRMMTLDIAK----SPSLVGAVHHASIIEITP---------AQMR 182 (240)
T ss_dssp HHHHHTCS----TTEEEECSCHHHHHHHHHHCTTSEEEEEHHHHS----STHHHHHTTCCSEEEECH---------HHHH
T ss_pred HHHHHHHH----CCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCC----CCHHHHHHHCCCCCCCCH---------HHHC
T ss_conf 99998752----365656653789999998642641477631023----410578874055014643---------5418
Q ss_pred CHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHC
Q ss_conf 999999999769949999149941246555689919999999984298899919959999999800
Q 003550 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRRNR 712 (811)
Q Consensus 647 ~~~lV~~l~~~GL~V~vwt~nne~~~~~~~~~~d~~~e~~~~~~~~GVDGIiTD~P~~~~~~~~~~ 712 (811)
.+++|+++|++|+.|++||+||+. ++.+++.++||||||||+|+.+.++++..
T Consensus 183 ~~~~v~~~~~~Gl~v~~wTvnd~~-------------~~~~~l~~~gVdgI~TD~P~l~~~vr~~~ 235 (240)
T d1zcca1 183 RPGIIEASRKAGLEIMVYYGGDDM-------------AVHREIATSDVDYINLDRPDLFAAVRSGM 235 (240)
T ss_dssp SHHHHHHHHHHTCEEEEECCCCCH-------------HHHHHHHHSSCSEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCEEEEECCCCHH-------------HHHHHHHHCCCCEEEECCHHHHHHHHHHH
T ss_conf 999999999879999997468999-------------99999998698999967499999999998
|
| >d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Hypothetical protein TM1621 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=315.06 Aligned_cols=223 Identities=20% Similarity=0.221 Sum_probs=169.2
Q ss_pred CCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55522323898799999936999999998799956346641369918983068633556668776788644444555676
Q 003550 405 SANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGS 484 (811)
Q Consensus 405 ~~~plIIaHRG~sg~~PENT~~Af~~A~~~Gad~IE~DVqlTKDGv~Vi~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~ 484 (811)
+..|+||||||+++.+||||++||++|++.|+|+||||||+||||++||+||.+|.|+|+ +.
T Consensus 2 ~~~~~iiaHRG~~~~~pENT~~af~~a~~~g~~~iE~Dv~~T~Dg~~Vv~HD~~l~r~t~------------------~~ 63 (226)
T d1o1za_ 2 HHHVIVLGHRGYSAKYLENTLEAFMKAIEAGANGVELDVRLSKDGKVVVSHDEDLKRLFG------------------LD 63 (226)
T ss_dssp CCCCEEEEETTTTTTSCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSSEEHHHHC------------------EE
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCEEEECCCEEEEEEC------------------CC
T ss_conf 999989988999999973129999999985989899888980599788604640455411------------------33
Q ss_pred CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCHHHH
Q ss_conf 53334779888803286655876433345796787788788989999999824897519997412147875207609999
Q 003550 485 GIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNS 564 (811)
Q Consensus 485 G~~i~dlT~~EL~~L~~~~~~p~~~~~~~~n~~~~~~~~iptL~EvL~~~k~~~~~~gi~IeIK~~~~~~~~~g~~~~~~ 564 (811)
| .+.++||+||++++. ++||||+|+|+++++. ..++||+|.+. .++.
T Consensus 64 ~-~i~~~t~~el~~l~~--------------------~~iptL~evl~~~~~~---~~l~iEiK~~~---------~~~~ 110 (226)
T d1o1za_ 64 V-KIRDATVSELKELTD--------------------GKITTLKEVFENVSDD---KIINIEIKERE---------AADA 110 (226)
T ss_dssp E-EGGGSCHHHHHHHTT--------------------TCCCBHHHHHHHSCTT---SEEEEEECCGG---------GHHH
T ss_pred C-EEEECCHHHHHHHHH--------------------HCCHHHHHHHHHHHCC---CCCCHHHCCCC---------CCCH
T ss_conf 1-353045344334443--------------------2001189999975223---21103304642---------1112
Q ss_pred HHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEECCCCCHHCHHHHHHHHHH-HHHHCCCCCEEECCCCCC
Q ss_conf 9999996199978883799980994799998723496299997152000015769999976-425045653010388533
Q 003550 565 VMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKF-ADSVVLSKESVYPLNSAF 643 (811)
Q Consensus 565 v~~~L~~~~~~~~~~~~ViiqSfd~~~L~~lk~~~~~~~~~li~~~~~d~~~~~l~~i~~~-a~~v~~~~~~i~p~~~~~ 643 (811)
+++.++.+ ++++++||+++.++.+. +..+.++++............+.+... +.++.++...+ .
T Consensus 111 ~~~~~~~~-------~~vi~~SF~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 175 (226)
T d1o1za_ 111 VLEISKKR-------KNLIFSSFDLDLLDEKF--KGTKYGYLIDEENYGSIENFVERVEKERPYSLHVPYQAF------E 175 (226)
T ss_dssp HHHHHTTC-------CSEEEEESCHHHHHHHC--TTSCEEEECCTTTTCSHHHHHHHHHHHCCSEEEEEGGGG------G
T ss_pred HHHHHHHC-------CCEECCCCCHHHHHHHH--HCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHH------H
T ss_conf 45554410-------32011343347899997--415512575245443067788765310431026732220------1
Q ss_pred CCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHH
Q ss_conf 57899999999976994999914994124655568991999999998429889991995999999
Q 003550 644 ITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARY 708 (811)
Q Consensus 644 l~~~~~lV~~l~~~GL~V~vwt~nne~~~~~~~~~~d~~~e~~~~~~~~GVDGIiTD~P~~~~~~ 708 (811)
.....++|+.+|++|+.|++||+|++. +.+++ ++||||||||+|+.+.+.
T Consensus 176 ~~~~~~~v~~~~~~g~~v~~wTVN~~~--------------~~~~l-~~gVdgIiTD~P~~~~~~ 225 (226)
T d1o1za_ 176 LEYAVEVLRSFRKKGIVIFVWTLNDPE--------------IYRKI-RREIDGVITDEVELFVKL 225 (226)
T ss_dssp SHHHHHHHHHHHHTTCEEEEESCCCHH--------------HHHHH-GGGCSEEEESCHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCHHH--------------HHHHH-HCCCCEEEECCHHHHHHC
T ss_conf 566699999999889989998999699--------------99999-769999997959999861
|
| >d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase UgpQ species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=0 Score=307.94 Aligned_cols=232 Identities=16% Similarity=0.129 Sum_probs=181.8
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 78998099999998108999999998199972899631240699099814998888763122100245311127977885
Q 003550 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (811)
Q Consensus 92 p~viAHRG~~~~~pENTl~a~~~A~~~ga~~~~iE~DVqlTkDgv~V~~HD~~l~~tT~~~~~~~~~~~~y~~~G~~~~g 171 (811)
..||||||+++.+||||++||+.|++.|++ ++|||||+||||++||+||.+++|+|++.+
T Consensus 2 t~iiaHRG~~~~~pENT~~a~~~A~~~G~~--~iE~Dv~~TkDg~~Vv~HD~~l~r~t~~~~------------------ 61 (240)
T d1zcca1 2 TKIVSHRGANRFAPENTFAAADLALQQGAD--YIELDVRESADGVLYVIHDETLDRTTNGTG------------------ 61 (240)
T ss_dssp CEEEETTTTTTTSCSSSHHHHHHHHHTTCS--EEEEEEEECTTCCEEECSSSBTTTTSSCCS------------------
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHCCCC--EEEEEEEEECCCCEEEECCCCCCCCCCCCC------------------
T ss_conf 889988999999970189999999984989--899988991499889953642342124456------------------
Q ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC-CCEEEEECCCHHHHHCCCHHHHHHHHHHHHCCC
Q ss_conf 3333469876515510543457898889987544559899986099-956991126045540280199999999642283
Q 003550 172 WFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV 250 (811)
Q Consensus 172 ~~~~d~t~~eL~~l~~~~~~~~r~~~~~g~~~~iptLeevl~~~~~-~~l~leiK~~~~~~~~~~~~~~~l~~~l~~~~~ 250 (811)
.+.++||+||++++++.++ +..+.+ .+||||+|++++++. .++++|+|++. .+.+.+++++++.
T Consensus 62 -~v~~~t~~el~~l~~~~~~---~~~~~~--~~IptL~evl~~~~~~~~l~iEiK~~~---------~~~v~~l~~~~~~ 126 (240)
T d1zcca1 62 -PVGHMLSSEIDTLDAGGWF---DDRFKG--AIVPRLDAYLEHLRGRAGVYIELKYCD---------PAKVAALVRHLGM 126 (240)
T ss_dssp -BSTTSCHHHHTTSCSSTTT---CGGGTT--CCCCBHHHHHHHHTTTCEEEEEEEESC---------HHHHHHHHHHHTC
T ss_pred -CHHHHHHHHHHHHHCCCCC---CCCCCC--CCCCHHHHHHHCCCCCCEEEEEECCCC---------CHHHHHHHHHHHH
T ss_conf -6777459999876506867---622279--867727875422466610489975686---------1256689999875
Q ss_pred ---EEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ---58936898999999876099875445654478866778643367886519999861312048975202577756678
Q 003550 251 ---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLL 327 (811)
Q Consensus 251 ---~~IsSf~~~~L~~l~~~~p~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~v~~~~i~~~~~~~~l~ 327 (811)
++++||+...++++++..| +.+..+....... ..+......+..+......++
T Consensus 127 ~~~v~~~Sf~~~~l~~~~~~~P--~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~--------- 182 (240)
T d1zcca1 127 VRDTFYFSFSEEMRQGLQSIAP--EFRRMMTLDIAKS-------------PSLVGAVHHASIIEITPAQMR--------- 182 (240)
T ss_dssp STTEEEECSCHHHHHHHHHHCT--TSEEEEEHHHHSS-------------THHHHHTTCCSEEEECHHHHH---------
T ss_pred HCCCCCCCCCHHHHHHHHHHHH--CCCEEEEECCCCC-------------CHHHHHHHCCCCCCCCHHHHC---------
T ss_conf 2365656653789999998642--6414776310234-------------105788740550146435418---------
Q ss_pred CCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHC
Q ss_conf 8858999999839959997148998755578999499999999769975582741589985013443200
Q 003550 328 PHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAH 397 (811)
Q Consensus 328 ~~~~lV~~aH~~Gl~V~~wt~~n~~~~~~~y~~D~~~e~~~~i~~G~~~VDgIiTD~P~~~~~~~~~~~~ 397 (811)
.+.+|+.+|++|++|++||+|++ .+.++.+++.| ||||+||+|+.+.+.++...+
T Consensus 183 -~~~~v~~~~~~Gl~v~~wTvnd~-----------~~~~~~l~~~g---VdgI~TD~P~l~~~vr~~~~~ 237 (240)
T d1zcca1 183 -RPGIIEASRKAGLEIMVYYGGDD-----------MAVHREIATSD---VDYINLDRPDLFAAVRSGMAE 237 (240)
T ss_dssp -SHHHHHHHHHHTCEEEEECCCCC-----------HHHHHHHHHSS---CSEEEESCHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHCCCEEEEECCCCH-----------HHHHHHHHHCC---CCEEEECCHHHHHHHHHHHHH
T ss_conf -99999999987999999746899-----------99999999869---899996749999999999887
|
| >d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Hypothetical protein TM1621 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=298.98 Aligned_cols=222 Identities=16% Similarity=0.151 Sum_probs=169.9
Q ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCC
Q ss_conf 99978998099999998108999999998199972899631240699099814998888763122100245311127977
Q 003550 89 GDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVP 168 (811)
Q Consensus 89 ~~~p~viAHRG~~~~~pENTl~a~~~A~~~ga~~~~iE~DVqlTkDgv~V~~HD~~l~~tT~~~~~~~~~~~~y~~~G~~ 168 (811)
...|+||||||+++.+||||++||+.|++.|++ ++|||||+||||++||+||.+++|+|++.+
T Consensus 2 ~~~~~iiaHRG~~~~~pENT~~af~~a~~~g~~--~iE~Dv~~T~Dg~~Vv~HD~~l~r~t~~~~--------------- 64 (226)
T d1o1za_ 2 HHHVIVLGHRGYSAKYLENTLEAFMKAIEAGAN--GVELDVRLSKDGKVVVSHDEDLKRLFGLDV--------------- 64 (226)
T ss_dssp CCCCEEEEETTTTTTSCTTSHHHHHHHHHTTCS--EEEEEEEECTTSCEEECSSSEEHHHHCEEE---------------
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCC--EEEEEEEECCCCCEEEECCCEEEEEECCCC---------------
T ss_conf 999989988999999973129999999985989--899888980599788604640455411331---------------
Q ss_pred CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC-CCEEEEECCCHHHHHCCCHHHHHHHHHHHH
Q ss_conf 8853333469876515510543457898889987544559899986099-956991126045540280199999999642
Q 003550 169 TPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSVSRS 247 (811)
Q Consensus 169 ~~g~~~~d~t~~eL~~l~~~~~~~~r~~~~~g~~~~iptLeevl~~~~~-~~l~leiK~~~~~~~~~~~~~~~l~~~l~~ 247 (811)
.+.++|++||++++ ..+||||+|+|++++. ..+++|+|.+. ..+.+++.+++
T Consensus 65 ----~i~~~t~~el~~l~---------------~~~iptL~evl~~~~~~~~l~iEiK~~~--------~~~~~~~~~~~ 117 (226)
T d1o1za_ 65 ----KIRDATVSELKELT---------------DGKITTLKEVFENVSDDKIINIEIKERE--------AADAVLEISKK 117 (226)
T ss_dssp ----EGGGSCHHHHHHHT---------------TTCCCBHHHHHHHSCTTSEEEEEECCGG--------GHHHHHHHHTT
T ss_pred ----EEEECCHHHHHHHH---------------HHCCHHHHHHHHHHHCCCCCCHHHCCCC--------CCCHHHHHHHH
T ss_conf ----35304534433444---------------3200118999997522321103304642--------11124555441
Q ss_pred CCCEEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2835893689899999987609987544565447886677864336788651999986-131204897520257775667
Q 003550 248 VVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVDESLYL 326 (811)
Q Consensus 248 ~~~~~IsSf~~~~L~~l~~~~p~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~-~a~gi~v~~~~i~~~~~~~~l 326 (811)
....+++||+.+.++++.. ..+..+++..... .....+ +..+.. .+.++.++...+..
T Consensus 118 ~~~vi~~SF~~~~l~~~~~-----~~~~~~l~~~~~~------~~~~~~---~~~~~~~~~~~~~~~~~~~~~------- 176 (226)
T d1o1za_ 118 RKNLIFSSFDLDLLDEKFK-----GTKYGYLIDEENY------GSIENF---VERVEKERPYSLHVPYQAFEL------- 176 (226)
T ss_dssp CCSEEEEESCHHHHHHHCT-----TSCEEEECCTTTT------CSHHHH---HHHHHHHCCSEEEEEGGGGGS-------
T ss_pred CCCEECCCCCHHHHHHHHH-----CCCEEEEECCCCC------CHHHHH---HHHHHHCCCCCCCCCHHHHHH-------
T ss_conf 0320113433478999974-----1551257524544------306778---876531043102673222015-------
Q ss_pred CCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCHH
Q ss_conf 88858999999839959997148998755578999499999999769975582741589985013
Q 003550 327 LPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAA 391 (811)
Q Consensus 327 ~~~~~lV~~aH~~Gl~V~~wt~~n~~~~~~~y~~D~~~e~~~~i~~G~~~VDgIiTD~P~~~~~~ 391 (811)
.....+|+.+|++|++|++||+|+ .++.++++.| ||||+||+|+.+.+.
T Consensus 177 ~~~~~~v~~~~~~g~~v~~wTVN~-------------~~~~~~l~~g---VdgIiTD~P~~~~~~ 225 (226)
T d1o1za_ 177 EYAVEVLRSFRKKGIVIFVWTLND-------------PEIYRKIRRE---IDGVITDEVELFVKL 225 (226)
T ss_dssp HHHHHHHHHHHHTTCEEEEESCCC-------------HHHHHHHGGG---CSEEEESCHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEEEECCCH-------------HHHHHHHHCC---CCEEEECCHHHHHHC
T ss_conf 666999999998899899989996-------------9999999769---999997959999861
|
| >d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Putative glycerophosphodiester phosphodiesterase TTHB141 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=297.17 Aligned_cols=213 Identities=17% Similarity=0.153 Sum_probs=167.8
Q ss_pred CEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22323898799999936999999998799956346641369918983068633556668776788644444555676533
Q 003550 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (811)
Q Consensus 408 plIIaHRG~sg~~PENT~~Af~~A~~~Gad~IE~DVqlTKDGv~Vi~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~ 487 (811)
|+||||||+++.+||||++||++|++.|+|+||||||+||||++||+||.++.|+ .
T Consensus 1 P~iiaHRG~~~~~pENT~~a~~~a~~~G~~~iE~DV~~TkDg~~vv~HD~~~~r~------------------------~ 56 (217)
T d1vd6a1 1 PLRLGHRGAPLKAKENTLESFRLALEAGLDGVELDVWPTRDGVFAVRHDPDTPLG------------------------P 56 (217)
T ss_dssp CEEEEETSCTTTSCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSCSEETTE------------------------E
T ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEECCCCCCCC------------------------C
T ss_conf 9599779999999830599999999859898999888955998788546435764------------------------2
Q ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCHHHHHHH
Q ss_conf 34779888803286655876433345796787788788989999999824897519997412147875207609999999
Q 003550 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (811)
Q Consensus 488 i~dlT~~EL~~L~~~~~~p~~~~~~~~n~~~~~~~~iptL~EvL~~~k~~~~~~gi~IeIK~~~~~~~~~g~~~~~~v~~ 567 (811)
+.++||+||+.+. .++|||+|++++.+..++ ..+++|+|...... ...+..
T Consensus 57 i~~~~~~el~~~~---------------------~~iptl~e~l~~~~~~~~-~~~~ie~K~~~~~~-------~~~~~~ 107 (217)
T d1vd6a1 57 VFQVDYADLKAQE---------------------PDLPRLEEVLALKEAFPQ-AVFNVELKSFPGLG-------EEAARR 107 (217)
T ss_dssp GGGSCHHHHHHHS---------------------TTCCBHHHHHGGGGTCTT-CEEEEEECCCTTSH-------HHHHHH
T ss_pred CCCHHHHHHHHHH---------------------CCCCCHHHHHHHHHHCCC-CEEEEEECCCCCHH-------HHHHHH
T ss_conf 1110598874310---------------------369978999999986787-24434532675202-------789999
Q ss_pred HHHHCCCCCCCCCEEEEEECCHHHHHHHHHC-CCCEEEEEECCCCCHHCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCC
Q ss_conf 9996199978883799980994799998723-496299997152000015769999976425045653010388533578
Q 003550 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITS 646 (811)
Q Consensus 568 ~L~~~~~~~~~~~~ViiqSfd~~~L~~lk~~-~~~~~~~li~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~ 646 (811)
+++.+... ++++++||++..+..+++. |+++++++........ .....+ ..+.+. +...
T Consensus 108 l~~~~~~~----~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~-----------~~~~~~--~~i~~~---~~~~ 167 (217)
T d1vd6a1 108 LAALLRGR----EGVWVSSFDPLALLALRKAAPGLPLGFLMAEDHSAL-----------LPCLGV--EAVHPH---HALV 167 (217)
T ss_dssp HHHHTTTC----SSEEEEESCHHHHHHHHHHCTTSCEEEEESSCCGGG-----------GGGSCC--SEEEEB---GGGC
T ss_pred HHHHHHCC----CEEEEEECCHHHHHHHHHHHCCCCEEEECCCCCCCH-----------HHHCCC--EEECCH---HHHH
T ss_conf 99986145----237874065788999999702674431103552100-----------110442--387220---7677
Q ss_pred CHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHH
Q ss_conf 9999999997699499991499412465556899199999999842988999199599999
Q 003550 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAAR 707 (811)
Q Consensus 647 ~~~lV~~l~~~GL~V~vwt~nne~~~~~~~~~~d~~~e~~~~~~~~GVDGIiTD~P~~~~~ 707 (811)
.+++|+++|++|+.|++||+|++. ++..++ ++|||||+||+|+++.+
T Consensus 168 ~~~~v~~~~~~g~~v~~wTvn~~~-------------~~~~~~-~~gvdgI~TD~P~~l~~ 214 (217)
T d1vd6a1 168 TEEAVAGWRKRGLFVVAWTVNEEG-------------EARRLL-ALGLDGLIGDRPEVLLP 214 (217)
T ss_dssp CHHHHHHHHHTTCEEEEECCCCHH-------------HHHHHH-HTTCSEEEESCHHHHTT
T ss_pred HHHHHHHHHHCCCEEEEECCCCHH-------------HHHHHH-HCCCCEEEECCHHHHHH
T ss_conf 789999999879999998999899-------------999999-67989999897899855
|
| >d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Putative glycerophosphodiester phosphodiesterase TTHB141 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.1e-44 Score=280.48 Aligned_cols=212 Identities=14% Similarity=0.061 Sum_probs=165.5
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 78998099999998108999999998199972899631240699099814998888763122100245311127977885
Q 003550 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (811)
Q Consensus 92 p~viAHRG~~~~~pENTl~a~~~A~~~ga~~~~iE~DVqlTkDgv~V~~HD~~l~~tT~~~~~~~~~~~~y~~~G~~~~g 171 (811)
|+||||||+++.+||||++||+.|++.|++ ++|||||+||||++||+||.+++|++
T Consensus 1 P~iiaHRG~~~~~pENT~~a~~~a~~~G~~--~iE~DV~~TkDg~~vv~HD~~~~r~~---------------------- 56 (217)
T d1vd6a1 1 PLRLGHRGAPLKAKENTLESFRLALEAGLD--GVELDVWPTRDGVFAVRHDPDTPLGP---------------------- 56 (217)
T ss_dssp CEEEEETSCTTTSCTTSHHHHHHHHHTTCS--EEEEEEEECTTSCEEECSCSEETTEE----------------------
T ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHCCCC--EEEEEEEEECCCCEEEECCCCCCCCC----------------------
T ss_conf 959977999999983059999999985989--89998889559987885464357642----------------------
Q ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC---CCEEEEECCCHHHHHCCCHHHHHHHHHHHHC
Q ss_conf 3333469876515510543457898889987544559899986099---9569911260455402801999999996422
Q 003550 172 WFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP---PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSV 248 (811)
Q Consensus 172 ~~~~d~t~~eL~~l~~~~~~~~r~~~~~g~~~~iptLeevl~~~~~---~~l~leiK~~~~~~~~~~~~~~~l~~~l~~~ 248 (811)
+.++|++||+.. ..++|||+|++++++. ..+.+|+|...... ..+...+.+..+..
T Consensus 57 --i~~~~~~el~~~----------------~~~iptl~e~l~~~~~~~~~~~~ie~K~~~~~~---~~~~~~l~~~~~~~ 115 (217)
T d1vd6a1 57 --VFQVDYADLKAQ----------------EPDLPRLEEVLALKEAFPQAVFNVELKSFPGLG---EEAARRLAALLRGR 115 (217)
T ss_dssp --GGGSCHHHHHHH----------------STTCCBHHHHHGGGGTCTTCEEEEEECCCTTSH---HHHHHHHHHHTTTC
T ss_pred --CCCHHHHHHHHH----------------HCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHH---HHHHHHHHHHHHCC
T ss_conf --111059887431----------------036997899999998678724434532675202---78999999986145
Q ss_pred CCEEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 835893689899999987609987544565447886677864336788651999986-1312048975202577756678
Q 003550 249 VVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVDESLYLL 327 (811)
Q Consensus 249 ~~~~IsSf~~~~L~~l~~~~p~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~-~a~gi~v~~~~i~~~~~~~~l~ 327 (811)
...+++||+...++++++..| ..++.+... ... ..+ ++. .+.++.++.. .
T Consensus 116 ~~v~~~Sf~~~~l~~~~~~~p--~~~~~~l~~-~~~---------~~~------~~~~~~~~i~~~~~-----------~ 166 (217)
T d1vd6a1 116 EGVWVSSFDPLALLALRKAAP--GLPLGFLMA-EDH---------SAL------LPCLGVEAVHPHHA-----------L 166 (217)
T ss_dssp SSEEEEESCHHHHHHHHHHCT--TSCEEEEES-SCC---------GGG------GGGSCCSEEEEBGG-----------G
T ss_pred CEEEEEECCHHHHHHHHHHHC--CCCEEEECC-CCC---------CCH------HHHCCCEEECCHHH-----------H
T ss_conf 237874065788999999702--674431103-552---------100------11044238722076-----------7
Q ss_pred CCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCHHH
Q ss_conf 88589999998399599971489987555789994999999997699755827415899850134
Q 003550 328 PHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAV 392 (811)
Q Consensus 328 ~~~~lV~~aH~~Gl~V~~wt~~n~~~~~~~y~~D~~~e~~~~i~~G~~~VDgIiTD~P~~~~~~~ 392 (811)
..+++|+.+|++|+.|++||+|++ ++++++++.| ||||+||+|+++.+.+
T Consensus 167 ~~~~~v~~~~~~g~~v~~wTvn~~------------~~~~~~~~~g---vdgI~TD~P~~l~~l~ 216 (217)
T d1vd6a1 167 VTEEAVAGWRKRGLFVVAWTVNEE------------GEARRLLALG---LDGLIGDRPEVLLPLG 216 (217)
T ss_dssp CCHHHHHHHHHTTCEEEEECCCCH------------HHHHHHHHTT---CSEEEESCHHHHTTSC
T ss_pred HHHHHHHHHHHCCCEEEEECCCCH------------HHHHHHHHCC---CCEEEECCHHHHHHCC
T ss_conf 778999999987999999899989------------9999999679---8999989789985554
|
| >d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Mammalian PLC domain: Phospholipase C isozyme D1 (PLC-D1) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.87 E-value=0.00064 Score=38.46 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=29.1
Q ss_pred EEECCCC---CCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEECCCCC
Q ss_conf 9809999---99981089999999981999728996312406990998149988
Q 003550 95 VARGGFS---GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 95 iAHRG~~---~~~pENTl~a~~~A~~~ga~~~~iE~DVqlTkDgv~V~~HD~~l 145 (811)
.+|.-+- -++-..|+.+|..|+..|+. .||+||+--.||.+||.|..++
T Consensus 11 SShNtyl~g~Ql~~~ss~~~~~~~l~~G~R--~ielD~w~g~d~ePvV~HG~t~ 62 (327)
T d1qasa3 11 SSHNTYLLEDQLTGPSSTEAYIRALCKGCR--CLELDCWDGPNQEPIIYHGYTF 62 (327)
T ss_dssp EESSTTBSSCSSSCCBCHHHHHHHHHTTCC--EEEEEEECCGGGCCEESCTTSC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCC--EEEEEEECCCCCCEEEEECCCC
T ss_conf 465346647856674169999999981994--8999822499998389658855
|
| >d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Mammalian PLC domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.51 E-value=0.0013 Score=36.68 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=38.7
Q ss_pred EECCCC---CCCCCHHHHHHHHHHHCCCCCCEEEEEEEE--ECCCCEEEECCCCC
Q ss_conf 809999---999810899999999819997289963124--06990998149988
Q 003550 96 ARGGFS---GIFPDSSSIAYSLTLITSAPSVILWCDVQL--TKDEAGICFPDLKL 145 (811)
Q Consensus 96 AHRG~~---~~~pENTl~a~~~A~~~ga~~~~iE~DVql--TkDgv~V~~HD~~l 145 (811)
+|.-+- ..+-..++.+|..|+..|+. .+|+||+= +.|+++||.|..++
T Consensus 15 ShNtyl~g~q~~~~~s~~~~~~~l~~G~R--~~eldi~dG~~~d~~Pvv~hg~t~ 67 (349)
T d2zkmx4 15 SHNTYLTAGQFSGLSSAEMYRQVLLSGCR--CVELDCWKGKPPDEEPIITHGFTM 67 (349)
T ss_dssp BSSTTBSSCSSSSCBCTHHHHHHHHTTCC--EEEEEEECCCTTCCSCEECCTTSS
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCC--EEEEEECCCCCCCCCCEEEECCEE
T ss_conf 64456647867784069999999982995--899983179898997089568731
|
| >d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Mammalian PLC domain: Phospholipase C isozyme D1 (PLC-D1) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.92 E-value=0.004 Score=33.74 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=42.9
Q ss_pred CEEECCCCCC---CCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEECCCC
Q ss_conf 2232389879---999993699999999879995634664136991898306863
Q 003550 408 LLVISKNGAS---GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 408 plIIaHRG~s---g~~PENT~~Af~~A~~~Gad~IE~DVqlTKDGv~Vi~HD~~L 459 (811)
..--||+-+- -..-..+..+|.+|++.||..||+||+--.||.|||.|..++
T Consensus 8 fI~SShNtyl~g~Ql~~~ss~~~~~~~l~~G~R~ielD~w~g~d~ePvV~HG~t~ 62 (327)
T d1qasa3 8 LVSSSHNTYLLEDQLTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTF 62 (327)
T ss_dssp EEEEESSTTBSSCSSSCCBCHHHHHHHHHTTCCEEEEEEECCGGGCCEESCTTSC
T ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCEEEEECCCC
T ss_conf 3634653466478566741699999999819948999822499998389658855
|
| >d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Mammalian PLC domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.74 E-value=0.018 Score=29.87 Aligned_cols=51 Identities=12% Similarity=0.082 Sum_probs=40.8
Q ss_pred EEECCCCCC-C--CCCCCHHHHHHHHHHCCCCEEECCCCC--CCCCCEEEEECCCC
Q ss_conf 232389879-9--999936999999998799956346641--36991898306863
Q 003550 409 LVISKNGAS-G--DYPSCTNLAYQKAISDGVDFIDCPVQM--SKDGVPFCLSFINL 459 (811)
Q Consensus 409 lIIaHRG~s-g--~~PENT~~Af~~A~~~Gad~IE~DVql--TKDGv~Vi~HD~~L 459 (811)
.--+|+-+- | ..-..+..+|..|+..||..||+||+= +.||+|||.|..++
T Consensus 12 I~SShNtyl~g~q~~~~~s~~~~~~~l~~G~R~~eldi~dG~~~d~~Pvv~hg~t~ 67 (349)
T d2zkmx4 12 INSSHNTYLTAGQFSGLSSAEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFTM 67 (349)
T ss_dssp ECBBSSTTBSSCSSSSCBCTHHHHHHHHTTCCEEEEEEECCCTTCCSCEECCTTSS
T ss_pred EECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCEE
T ss_conf 22464456647867784069999999982995899983179898997089568731
|
| >d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related protein TM1436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: GlpP-like family: GlpP-like domain: Glycerol uptake operon antiterminator-related protein TM1436 species: Thermotoga maritima [TaxId: 2336]
Probab=92.43 E-value=0.22 Score=23.35 Aligned_cols=141 Identities=11% Similarity=0.138 Sum_probs=93.8
Q ss_pred CCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHC--C
Q ss_conf 87889899999998248975199974121478752076099999999996199978883799980994799998723--4
Q 003550 522 GKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK--T 599 (811)
Q Consensus 522 ~~iptL~EvL~~~k~~~~~~gi~IeIK~~~~~~~~~g~~~~~~v~~~L~~~~~~~~~~~~ViiqSfd~~~L~~lk~~--~ 599 (811)
+.|..|.++.+.+++.++ .+++.++-- .|+.-.+..++-|.+++.+ =|-|..+..+++.|+. .
T Consensus 28 g~I~~l~~~v~~~k~~gK--~v~VHiDLi------~GL~~d~~av~flk~~~~d-------GIISTk~~~i~~Ak~~Gl~ 92 (172)
T d1vkfa_ 28 SDILNLKFHLKILKDRGK--TVFVDMDFV------NGLGEGEEAILFVKKAGAD-------GIITIKPKNYVVAKKNGIP 92 (172)
T ss_dssp EETTTHHHHHHHHHHTTC--EEEEEGGGE------ETCCSSHHHHHHHHHHTCS-------EEEESCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHCCC--EEEEEEEEC------CCCCCCHHHHHHHHHCCCC-------EEEECCHHHHHHHHHCCCE
T ss_conf 828889999999998699--899986404------7778877899999974999-------9997879999999986985
Q ss_pred CCEEEEEECCCCCHHCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 96299997152000015769999976425045653010388533578999999999769949999149941246555689
Q 003550 600 SYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFS 679 (811)
Q Consensus 600 ~~~~~~li~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~~lV~~l~~~GL~V~vwt~nne~~~~~~~~~~ 679 (811)
.++++|++|+ .+++...+......|+.-.+.|.. ..+.++++.. +.++.+.++=...
T Consensus 93 tIqR~FliDS-------~al~~~~~~i~~~~PD~IEiLPG~-----i~p~ii~~~~--~~piIAGGLI~~~--------- 149 (172)
T d1vkfa_ 93 AVLRFFALDS-------KAVERGIEQIETLGVDVVEVLPGA-----VAPKVARKIP--GRTVIAAGLVETE--------- 149 (172)
T ss_dssp EEEEEECCSH-------HHHHHHHHHHHHHTCSEEEEESGG-----GHHHHHTTST--TSEEEEESCCCSH---------
T ss_pred EEEEEEEEEH-------HHHHHHHHHHHHCCCCEEEECCCH-----HHHHHHHHHC--CCCEEEECCCCCH---------
T ss_conf 9998875636-------789999999732698999987722-----0699999814--9979951770889---------
Q ss_pred CHHHHHHHHHHHCCCCEEEECCHHHH
Q ss_conf 91999999998429889991995999
Q 003550 680 DPTVEINTYYEGAGIDGVITEFPMTA 705 (811)
Q Consensus 680 d~~~e~~~~~~~~GVDGIiTD~P~~~ 705 (811)
+++...+ +.| .+|-|-...++
T Consensus 150 ---edv~~al-~~g-~aVSTS~~~LW 170 (172)
T d1vkfa_ 150 ---EEAREIL-KHV-SAISTSSRILW 170 (172)
T ss_dssp ---HHHHHHT-TTS-SEEEECCHHHH
T ss_pred ---HHHHHHH-HCC-EEEECCCHHHH
T ss_conf ---9999998-669-08988876874
|
| >d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.95 E-value=0.97 Score=19.55 Aligned_cols=89 Identities=13% Similarity=0.192 Sum_probs=37.7
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHCCCEEEEEECCCCC----CCCCCCCCCHHHHHHHHHHCC
Q ss_conf 199998613120489752025777-566788858999999839959997148998----755578999499999999769
Q 003550 299 NLTFIKTFASGILVPKDYIWPVDE-SLYLLPHTTIVLDAHKERLEVFASNFANDI----PISFNYSYDPLTEYLSFIDNG 373 (811)
Q Consensus 299 ~L~~i~~~a~gi~v~~~~i~~~~~-~~~l~~~~~lV~~aH~~Gl~V~~wt~~n~~----~~~~~y~~D~~~e~~~~i~~G 373 (811)
++.+|...++|+++.+..+--.-. .........++..+++.|..|++.|=-=+. +.+-+ ....+....+..|
T Consensus 148 NldeIi~~sDgimIaRGDLgvei~~e~vp~~Qk~Ii~~~~~~gkpvivATq~LeSM~~~~~PTR---AEv~Dvanav~dG 224 (265)
T d1a3xa2 148 NFDEILKVTDGVMVARGDLGIEIPAPEVLAVQKKLIAKSNLAGKPVICATQMLESMTYNPRPTR---AEVSDVGNAILDG 224 (265)
T ss_dssp THHHHHHHCSEEEEEHHHHHHHSCHHHHHHHHHHHHHHHHHHTCCEEEESSSSGGGGTCSSCCH---HHHHHHHHHHHTT
T ss_pred CHHHHHHHCCEEEEECCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCH---HHHHHHHHHHHHC
T ss_conf 7588886355158872430232247788898899999999719948854653232135999868---9999999999938
Q ss_pred CCCCCEEEC-------CCCCCCCHHHH
Q ss_conf 975582741-------58998501344
Q 003550 374 DFSVDGVLS-------DFPLTPSAAVD 393 (811)
Q Consensus 374 ~~~VDgIiT-------D~P~~~~~~~~ 393 (811)
+|+|+= .||..+.++++
T Consensus 225 ---~D~vmLs~ETA~G~~Pv~~V~~~~ 248 (265)
T d1a3xa2 225 ---ADCVMLSGETAKGNYPINAVTTMA 248 (265)
T ss_dssp ---CSEECCSHHHHSCSCHHHHHHHHH
T ss_pred ---CCEEEECCCCCCCCCHHHHHHHHH
T ss_conf ---978997640216879999999999
|