Citrus Sinensis ID: 003553

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-

MATSAACVRISSFHYNNNNFSKLCFFRTLDNSSSMLERLLCSSSLHHFLSHKTKLSSLPRNYLYPFRRPLAVISHRPIHPYKVVAMAERTPASTSHSRNKHTNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWKVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLMCCAADMLSVPSRKHVVLVGHKSSVDFENMLAAAHASYDLNKTVIHIDPADTEEMDFWEEHNSNNASMARNNFSADKVVALVCQNFSCSPPVTDPISLENLLLEKPSSTA

cccccEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccHHHHHccccccccccccHHHHHHHHHccccEEEEEccccccHHHHHHHHccccHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccccccEEEcccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccEEEccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHccccccccccccccccccccccccEEEcccccHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccEEcHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHccccccccccccccccccEEEEccccccccccccHHHHHHHHHccccccc

ccccEEEEEEEEEEEccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEcccccccccccccccccccccccccccccccHHcccccHHHHHHcccccccccccHHHHHHHHHccccEEEEEccccccHHHHEcccccccHHHHHHHHHccEEEEEcccccccHHHHHHHHHHHHcccccccEEEEEccccccEEEccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccEEEccccccccccccccccccEEEEEcHHHHHHHHccHHHHHHHHccccccccEccccccccccccccccEcEccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccEEEcccccccEEEEccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHcHccccHHHHccccccccEEEEEEEccccccccccHHHHHHHHHccccccc

MATSAACVRISsfhynnnnfskLCFFRTLDNSSSMLERLLCSSSlhhflshktklsslprnylypfrrplavishrpihpykvvamaertpastshsrnkhtnrlaaehspyllqhahnpvdwfawGEEAFAEArkrdvpiflsigystchwchvmevesfEDEGVAKLLNDWFVSIkvdreerpdvdkVYMTYVQALyggggwkvkdAWDKKRDMLAQSGAFAIEQLSEALSasassnklpdelpQNALRLCAEQLSKSydsrfggfgsapkfprpvEIQMMLYHSKkledtgksgeasegQKMVLFTLQCMakggihdhvgggfhrysvderwhvphfekmlYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRrdmigpggeifsaedadsaetegatrkkegaFYVWTSKEVEDILGEHAILFKEhyylkptgncdlsrmsdphnefkgknVLIELndssasasklgmPLEKYLNILGECRRKLfdvrskrprphlddkvivSWNGLVISSFARASKILKSEAesamfnfpvvgsdrkEYMEVAESAASFIRRHLYDEQTHRLqhsfrngpskapgfldDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDelfldregggyfnttgedpsvllrvkedhdgaepsgnsvSVINLVRLASIvagsksdyyrqNAEHSLAVFETRLKDMAMAVPLMCCAAdmlsvpsrkHVVLVGHKSSVDFENMLAAAHAsydlnktvihidpadteemdfweehnsnnasmarnnfSADKVVALVCQnfscsppvtdpislenlllekpssta

MATSAACVRISSfhynnnnfsKLCFFRTLDNSSSMLERLLCSSSLHHFLSHKTKLSSLPRNYLYPFRRPLAVISHRPIHPYKVVAMAErtpastshsrnKHTNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSikvdreerpdvdkVYMTYVQAlyggggwkvKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGeifsaedadsaetegatrkkegafyvWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLfdvrskrprphlddkvivswNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDgaepsgnsvsvinLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLMCCAADMLSVPSRKHVVLVGHKSSVDFENMLAAAHASYDLNKTVIHIDPADTEEMDFWEEHNSNNASMARNNFSADKVVALVCQNFScsppvtdpislenlllekpssta

MATSAACVRISSFHYNNNNFSKLCFFRTLDNSSSMLERllcssslhhflshktklsslPRNYLYPFRRPLAVISHRPIHPYKVVAMAERTPASTSHSRNKHTNRLAAEHSPYLLQHAHNPVDwfawgeeafaeaRKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWKVKDAWDKKRDMLAQSGAFAIEQlsealsasassNKLPDELPQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLMCCAADMLSVPSRKHVVLVGHKSSVDFENMLAAAHASYDLNKTVIHIDPADTEEMDFWEEHNSNNASMARNNFSADKVVALVCQNFSCSPPVTDPISLENLLLEKPSSTA

*****ACVRISSFHYNNNNFSKLCFFRTLDNSSSMLERLLCSSSLHHFLSHKTKLSSLPRNYLYPFRRPLAVISHRPIHPYKVVAM************************PYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWKVKDAWDKKRDMLAQSGAFAI******************************************************IQMML********************MVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF******************GAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDL**************VLI************GMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRL**********APGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTG****VLL***************VSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLMCCAADMLSVPSRKHVVLVGHKSSVDFENMLAAAHASYDLNKTVIHIDPADTEEMDFW*************NFSADKVVALVCQNFSCSPPVTDPI**************

*****AC*RISSFHYNNNNFSKLCFFRTLDNSSSMLERLLCSSSLHHFLSHKTK********************************************************PYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWKVKDAWDKKRDMLAQSGAFAIE**********************ALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLMCCAADMLSVPSRKHVVLVGHKSSVDFENMLAAAHASYDLNKTVIHIDPADTEEMDFWEEHNSNNASMARNNFSADKVVALVCQNFSCSPPVTDPISLEN**********

MATSAACVRISSFHYNNNNFSKLCFFRTLDNSSSMLERLLCSSSLHHFLSHKTKLSSLPRNYLYPFRRPLAVISHRPIHPYKVVAMA***************NRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWKVKDAWDKKRDMLAQSGAFAIEQLSEA**********PDELPQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKL**********EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSA************RKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLMCCAADMLSVPSRKHVVLVGHKSSVDFENMLAAAHASYDLNKTVIHIDPADTEEMDFWEEHNSNNASMARNNFSADKVVALVCQNFSCSPPVTDPISLENLLLEKPSSTA

***SAACVRISSFHYNNNNFSKLCFFRTLDNSSSMLERLLCSSSLHHFLSHKTKLSSLPRNYLYPFRRPLAVISHRPI**********************HTNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWKVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLMCCAADMLSVPSRKHVVLVGHKSSVDFENMLAAAHASYDLNKTVIHIDPADTEEMDFWEEHNSNNASMARNNFSADKVVALVCQNFSCSPPVTDPISLENLLLE******

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		811	2.2.26 [Sep-21-2011]
Q8TB22		786	Spermatogenesis-associate	yes	no	0.828	0.854	0.405	1e-153
Q80YT5		790	Spermatogenesis-associate	yes	no	0.818	0.840	0.396	1e-146
Q6T393		789	Spermatogenesis-associate	yes	no	0.822	0.845	0.388	1e-144
Q09214		729	Uncharacterized protein B	yes	no	0.826	0.919	0.353	1e-121
P37512		689	Uncharacterized protein Y	yes	no	0.784	0.923	0.352	1e-115
P37509		79	Uncharacterized protein Y	no	no	0.061	0.632	0.745	2e-16

>sp\|Q8TB22\|SPT20_HUMAN Spermatogenesis-associated protein 20 OS=Homo sapiens GN=SPATA20 PE=2 SV=3	Back alignment and function desciption

 Score =  541 bits (1395), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 313/772 (40%), Positives = 431/772 (55%), Gaps = 100/772 (12%)

Query: 91  PASTSHSRNKHTNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTC 150
           P+ST     +  NRL  E SPYLLQHA+NPVDW+ WG+EAF +ARK + PIFLS+GYSTC
Sbjct: 54  PSSTPQ---RVPNRLIHEKSPYLLQHAYNPVDWYPWGQEAFDKARKENKPIFLSVGYSTC 110

Query: 151 HWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGW------ 204
           HWCH+ME ESF++E + +LL++ FVS+KVDREERPDVDKVYMT+VQA   GGGW      
Sbjct: 111 HWCHMMEEESFQNEEIGRLLSEDFVSVKVDREERPDVDKVYMTFVQATSSGGGWPMNVWL 170

Query: 205 -----------------------------KVKDAWDKKRDMLAQSGAFAIEQLSEALSAS 235
                                        ++++ W + ++ L ++     ++++ AL A 
Sbjct: 171 TPNLQPFVGGTYFPPEDGLTRVGFRTVLLRIREQWKQNKNTLLENS----QRVTTALLAR 226

Query: 236 ASSNKLPDELPQNALRL---CAEQLSKSYDSRFGGFGSAPKFPRPVEIQMML--YHSKKL 290
           +  +    +LP +A  +   C +QL + YD  +GGF  APKFP PV +  +   + S +L
Sbjct: 227 SEISVGDRQLPPSAATVNNRCFQQLDEGYDEEYGGFAEAPKFPTPVILSFLFSYWLSHRL 286

Query: 291 EDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQL 350
              G     S  Q+M L TL+ MA GGI DHVG GFHRYS D +WHVPHFEKMLYDQ QL
Sbjct: 287 TQDG-----SRAQQMALHTLKMMANGGIRDHVGQGFHRYSTDRQWHVPHFEKMLYDQAQL 341

Query: 351 ANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAF 410
           A  Y  AF L+ D FYS + + IL Y+ R +    G  +SAEDADS    G  R KEGA+
Sbjct: 342 AVAYSQAFQLSGDEFYSDVAKGILQYVARSLSHRSGGFYSAEDADSPPERG-QRPKEGAY 400

Query: 411 YVWTSKEVEDILGEHAI----------LFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLI 460
           YVWT KEV+ +L E  +          L  +HY L   GN  +S   DP  E +G+NVL 
Sbjct: 401 YVWTVKEVQQLLPEPVLGATEPLTSGQLLMKHYGLTEAGN--ISPSQDPKGELQGQNVLT 458

Query: 461 ELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFAR 520
                  +A++ G+ +E    +L     KLF  R  RP+PHLD K++ +WNGL++S +A 
Sbjct: 459 VRYSLELTAARFGLDVEAVRTLLNSGLEKLFQARKHRPKPHLDSKMLAAWNGLMVSGYAV 518

Query: 521 ASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP--- 577
              +L              G DR   +  A + A F++RH++D  + RL  +   GP   
Sbjct: 519 TGAVL--------------GQDR--LINYATNGAKFLKRHMFDVASGRLMRTCYTGPGGT 562

Query: 578 ---SKAP--GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNT 632
              S  P  GFL+DYAF++ GLLDLYE    + WL WA+ LQ+TQD+LF D +GGGYF +
Sbjct: 563 VEHSNPPCWGFLEDYAFVVRGLLDLYEASQESAWLEWALRLQDTQDKLFWDSQGGGYFCS 622

Query: 633 TGEDPSVL-LRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETR 691
             E  + L LR+K+D DGAEPS NSVS  NL+RL     G K   +       L  F  R
Sbjct: 623 EAELGAGLPLRLKDDQDGAEPSANSVSAHNLLRLHGFT-GHKD--WMDKCVCLLTAFSER 679

Query: 692 LKDMAMAVPLMCCAADMLSVPSRKHVVLVGHKSSVDFENMLAAAHASYDLNKTVIHIDPA 751
           ++ + +A+P M  A       + K +V+ G + + D + ++   H+ Y  NK +I    A
Sbjct: 680 MRRVPVALPEMVRALSA-QQQTLKQIVICGDRQAKDTKALVQCVHSVYIPNKVLIL---A 735

Query: 752 DTEEMDFWEEHNSNNASMARNNFSADKVVALVCQNFSCSPPVTDPISLENLL 803
           D +   F        +++ R     D+  A VC+N +CS P+TDP  L  LL
Sbjct: 736 DGDPSSFLSRQLPFLSTLRRLE---DQATAYVCENQACSVPITDPCELRKLL 784

May play a role in fertility regulation.
Homo sapiens (taxid: 9606)

>sp\|Q80YT5\|SPT20_MOUSE Spermatogenesis-associated protein 20 OS=Mus musculus GN=Spata20 PE=2 SV=1	Back alignment and function description

>sp\|Q6T393\|SPT20_RAT Spermatogenesis-associated protein 20 OS=Rattus norvegicus GN=Spata20 PE=1 SV=1	Back alignment and function description

>sp\|Q09214\|YP65_CAEEL Uncharacterized protein B0495.5 OS=Caenorhabditis elegans GN=B0495.5 PE=4 SV=2	Back alignment and function description

>sp\|P37512\|YYAL_BACSU Uncharacterized protein YyaL OS=Bacillus subtilis (strain 168) GN=yyaL PE=4 SV=1	Back alignment and function description

>sp\|P37509\|YYAO_BACSU Uncharacterized protein YyaO OS=Bacillus subtilis (strain 168) GN=yyaO PE=4 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		811
359479833		819	PREDICTED: spermatogenesis-associated pr	0.914	0.905	0.780	0.0
296086616		754	unnamed protein product [Vitis vinifera]	0.884	0.950	0.791	0.0
255559290		874	conserved hypothetical protein [Ricinus	0.892	0.828	0.786	0.0
449436537		855	PREDICTED: spermatogenesis-associated pr	0.959	0.909	0.718	0.0
449498445		855	PREDICTED: LOW QUALITY PROTEIN: spermato	0.959	0.909	0.714	0.0
115432144		839	cold-induced thioredoxin domain-containi	0.898	0.868	0.756	0.0
356570951		755	PREDICTED: spermatogenesis-associated pr	0.871	0.936	0.755	0.0
356505532		809	PREDICTED: spermatogenesis-associated pr	0.929	0.932	0.731	0.0
224132400		756	predicted protein [Populus trichocarpa]	0.854	0.916	0.789	0.0
357511183		809	Spermatogenesis-associated protein [Medi	0.930	0.933	0.716	0.0

>gi\|359479833\|ref\|XP_002267103.2\| PREDICTED: spermatogenesis-associated protein 20-like [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1255 bits (3247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 607/778 (78%), Positives = 665/778 (85%), Gaps = 36/778 (4%)

Query: 68  RPLAVISHRPIHPYKVVAMAERTPASTSHSRNKHTNRLAAEHSPYLLQHAHNPVDWFAWG 127
           R L +   R +H  KV+AMAER+  + SHS +K+TNRLAAEHSPYLLQHAHNPVDW+ WG
Sbjct: 43  RTLPLFPRRHVHTLKVLAMAERSMKTASHS-HKYTNRLAAEHSPYLLQHAHNPVDWYPWG 101

Query: 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDV 187
           EEAF+E+RKRDVPIFLSIGYSTCHWCHVMEVESFE+EGVAKLLNDWFVSIKVDREERPDV
Sbjct: 102 EEAFSESRKRDVPIFLSIGYSTCHWCHVMEVESFENEGVAKLLNDWFVSIKVDREERPDV 161

Query: 188 DKVYMTYVQALYGGGGW-----------------------------------KVKDAWDK 212
           DKVYMTYVQALYGGGGW                                   KVKDAW+ 
Sbjct: 162 DKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPDDKYGRPGFKTVLRKVKDAWEN 221

Query: 213 KRDMLAQSGAFAIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSRFGGFGSAP 272
           KRD+L +SGAFAIEQLSEALSA+ASSNKL D +PQ AL LCAEQL+ +YD  +GGFGSAP
Sbjct: 222 KRDVLVKSGAFAIEQLSEALSATASSNKLADGIPQQALHLCAEQLAGNYDPEYGGFGSAP 281

Query: 273 KFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVD 332
           KFPRPVEIQ+MLYH KKLE++GKSGEA+E  KMV F+LQCMA+GG+HDH+GGGFHRYSVD
Sbjct: 282 KFPRPVEIQLMLYHYKKLEESGKSGEANEVLKMVAFSLQCMARGGVHDHIGGGFHRYSVD 341

Query: 333 ERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAE 392
           E WHVPHFEKMLYDQGQLAN YLD FS+TKDVFYS + RDILDYLRRDMIGP GEIFSAE
Sbjct: 342 ECWHVPHFEKMLYDQGQLANAYLDVFSITKDVFYSCVSRDILDYLRRDMIGPEGEIFSAE 401

Query: 393 DADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNE 452
           DADSAE+E A RKKEGAFY+WTSKEVED++GEHA LFK+HYY+KP+GNCDLSRMSDPHNE
Sbjct: 402 DADSAESEDAARKKEGAFYIWTSKEVEDVIGEHASLFKDHYYIKPSGNCDLSRMSDPHNE 461

Query: 453 FKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNG 512
           FKGKNVLIE N +SA ASKLGMP+EKYL+ILG CRRKLFDVR  RPRPHLDDKVIVSWNG
Sbjct: 462 FKGKNVLIERNCASAMASKLGMPVEKYLDILGTCRRKLFDVRLNRPRPHLDDKVIVSWNG 521

Query: 513 LVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS 572
           L ISSFARASKILKSEAE   F FPVVG D KEYMEVAE AASFIR+ LYDEQT RL+HS
Sbjct: 522 LAISSFARASKILKSEAEGTKFRFPVVGCDPKEYMEVAEKAASFIRKWLYDEQTRRLRHS 581

Query: 573 FRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNT 632
           FRNGPSKAPGFLDDYAFLISGLLD+YEFG  T WLVWAIELQ+TQDELFLD+EGGGYFNT
Sbjct: 582 FRNGPSKAPGFLDDYAFLISGLLDIYEFGGNTNWLVWAIELQDTQDELFLDKEGGGYFNT 641

Query: 633 TGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRL 692
            GEDPSVLLRVKEDHDGAEPSGNSVSVINLVRL S+VAGS  + +R+NAEH LAVFETRL
Sbjct: 642 PGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLTSMVAGSWFERHRRNAEHLLAVFETRL 701

Query: 693 KDMAMAVPLMCCAADMLSVPSRKHVVLVGHKSSVDFENMLAAAHASYDLNKTVIHIDPAD 752
           KDMAMAVPLMCC ADM SVPSRK VVLVGHKSSV+FE+MLAAAHA YD N+TVIHIDP +
Sbjct: 702 KDMAMAVPLMCCGADMFSVPSRKQVVLVGHKSSVEFEDMLAAAHAQYDPNRTVIHIDPTE 761

Query: 753 TEEMDFWEEHNSNNASMARNNFSADKVVALVCQNFSCSPPVTDPISLENLLLEKPSST 810
           TE+M+FWE  NSN A MA+NNF+ DKVVALVCQNF+CS PVTD  SL+ LL  KPSS 
Sbjct: 762 TEQMEFWEAMNSNIALMAKNNFAPDKVVALVCQNFTCSSPVTDSTSLKALLCLKPSSA 819

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|296086616\|emb\|CBI32251.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255559290\|ref\|XP_002520665.1\| conserved hypothetical protein [Ricinus communis] gi\|223540050\|gb\|EEF41627.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|449436537\|ref\|XP_004136049.1\| PREDICTED: spermatogenesis-associated protein 20-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449498445\|ref\|XP_004160539.1\| PREDICTED: LOW QUALITY PROTEIN: spermatogenesis-associated protein 20-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|115432144\|gb\|ABI97349.1\| cold-induced thioredoxin domain-containing protein [Ammopiptanthus mongolicus]	Back alignment and taxonomy information

>gi\|356570951\|ref\|XP_003553646.1\| PREDICTED: spermatogenesis-associated protein 20-like [Glycine max]	Back alignment and taxonomy information

>gi\|356505532\|ref\|XP_003521544.1\| PREDICTED: spermatogenesis-associated protein 20-like [Glycine max]	Back alignment and taxonomy information

>gi\|224132400\|ref\|XP_002321330.1\| predicted protein [Populus trichocarpa] gi\|222862103\|gb\|EEE99645.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357511183\|ref\|XP_003625880.1\| Spermatogenesis-associated protein [Medicago truncatula] gi\|355500895\|gb\|AES82098.1\| Spermatogenesis-associated protein [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		811
TAIR\|locus:2125541		818	AT4G03200 [Arabidopsis thalian	0.776	0.770	0.687	2.6e-290
ZFIN\|ZDB-GENE-030131-7269		818	spata20 "spermatogenesis assoc	0.701	0.695	0.378	6.3e-140
UNIPROTKB\|Q8TB22		786	SPATA20 "Spermatogenesis-assoc	0.695	0.717	0.377	2.8e-135
UNIPROTKB\|F1NIQ1		685	SPATA20 "Uncharacterized prote	0.672	0.795	0.399	1.2e-134
UNIPROTKB\|F1RT97		789	LOC100738512 "Uncharacterized	0.704	0.723	0.375	1.1e-133
UNIPROTKB\|E2QU41		789	SPATA20 "Uncharacterized prote	0.695	0.714	0.364	1.8e-133
UNIPROTKB\|F1PTK3		789	MYCBPAP "Uncharacterized prote	0.695	0.714	0.364	1.8e-133
UNIPROTKB\|F6UYN9		821	MYCBPAP "Uncharacterized prote	0.695	0.686	0.364	1.8e-133
UNIPROTKB\|A4FV36		789	SPATA20 "Uncharacterized prote	0.704	0.723	0.376	2.3e-133
UNIPROTKB\|I3LGI2		773	LOC100738512 "Uncharacterized	0.704	0.738	0.375	7.7e-131

TAIR\|locus:2125541 AT4G03200 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2292 (811.9 bits), Expect = 2.6e-290, Sum P(2) = 2.6e-290
 Identities = 437/636 (68%), Positives = 513/636 (80%)

Query:   173 WFVSIKVDREERPDVDKVYMTYVQALYGGGGWK-----VKDAWDKKRDMLAQSGAFAIEQ 227
             W +S+ +  + +P +   Y       YG  G+K     VKDAW+ KRD L +SG +AIE+
Sbjct:   182 WPLSVFLSPDLKPLMGGTYFP-PNDNYGRPGFKTLLKKVKDAWNSKRDTLVKSGTYAIEE 240

Query:   228 XXXXXXXXXXXNKLPDELPQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHS 287
                        +KL D + + A+  CA+QLS+SYDS FGGFGSAPKFPRPVEIQ+MLYH 
Sbjct:   241 LSKALSASTGADKLSDGISREAVSTCAKQLSRSYDSEFGGFGSAPKFPRPVEIQLMLYHY 300

Query:   288 KKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQ 347
             KKL+++GK+ EA E + MVLF+LQ MA GG+HDH+GGGFHRYSVDE WHVPHFEKMLYDQ
Sbjct:   301 KKLKESGKTSEADEEKSMVLFSLQGMANGGMHDHIGGGFHRYSVDECWHVPHFEKMLYDQ 360

Query:   348 GQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKE 407
             GQLANVYLD FS+TKDV YSY+ RDILDYLRRDMI P G IFSAEDADS E EGA RKKE
Sbjct:   361 GQLANVYLDGFSITKDVMYSYVARDILDYLRRDMIAPEGGIFSAEDADSFEFEGAKRKKE 420

Query:   408 GAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSA 467
             GAFY+WTS E++++LGE+A LFKEHYY+K +GNCDLS  SDPHNEF GKNVLIE N++SA
Sbjct:   421 GAFYIWTSDEIDEVLGENADLFKEHYYVKKSGNCDLSSRSDPHNEFAGKNVLIERNETSA 480

Query:   468 SASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKS 527
              ASK  + +EKY  ILGECRRKLFDVR KRP+PHLDDK+IVSWNGLVISSFARASKILK+
Sbjct:   481 MASKFSLSVEKYQEILGECRRKLFDVRLKRPKPHLDDKIIVSWNGLVISSFARASKILKA 540

Query:   528 EAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDY 587
             E ES  + FPVV S  ++Y+EVAE AA FIR +LYDEQ+ RLQHS+R GPSKAP FLDDY
Sbjct:   541 EPESTKYYFPVVNSQPEDYIEVAEKAALFIRGNLYDEQSRRLQHSYRQGPSKAPAFLDDY 600

Query:   588 AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDH 647
             AFLISGLLDLYE G G +WL WAI+LQ TQDEL+LDREGG YFNT G+DPSVLLRVKEDH
Sbjct:   601 AFLISGLLDLYENGGGIEWLKWAIKLQETQDELYLDREGGAYFNTEGQDPSVLLRVKEDH 660

Query:   648 DGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLMCCAAD 707
             DGAEPSGNSVS INLVRLASIVAG K++ Y   A   LAVFE RL+++A+AVPLMCC+AD
Sbjct:   661 DGAEPSGNSVSAINLVRLASIVAGEKAESYLNTAHRLLAVFELRLRELAVAVPLMCCSAD 720

Query:   708 MLSVPSRKHVVLVGHKSSVDFENMLAAAHASYDLNKTVIHIDPADTEEMDFWEEHNSNNA 767
             M+SVPSRK VVLVG KSS +  NML+AAH+ YD NKTVIHIDP+ ++E++FWEEHNSN A
Sbjct:   721 MISVPSRKQVVLVGSKSSPELTNMLSAAHSVYDPNKTVIHIDPSSSDEIEFWEEHNSNVA 780

Query:   768 SMARNNFSADKVVALVCQNFSCSPPVTDPISLENLL 803
              MA+ N +++KVVALVCQ+F+CSPPV D  SL  LL
Sbjct:   781 EMAKKNRNSEKVVALVCQHFTCSPPVFDSSSLTRLL 816

GO:0003824 "catalytic activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

ZFIN\|ZDB-GENE-030131-7269 spata20 "spermatogenesis associated 20" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8TB22 SPATA20 "Spermatogenesis-associated protein 20" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NIQ1 SPATA20 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RT97 LOC100738512 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QU41 SPATA20 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PTK3 MYCBPAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F6UYN9 MYCBPAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|A4FV36 SPATA20 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LGI2 LOC100738512 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6T393	SPT20_RAT	No assigned EC number	0.3887	0.8224	0.8453	yes	no
Q80YT5	SPT20_MOUSE	No assigned EC number	0.3960	0.8187	0.8405	yes	no
Q09214	YP65_CAEEL	No assigned EC number	0.3538	0.8261	0.9190	yes	no
Q8TB22	SPT20_HUMAN	No assigned EC number	0.4054	0.8286	0.8549	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00023575001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (745 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00020486001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (564 aa)	•		0.539
	GSVIVG00019071001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (636 aa)	•		0.508
	GSVIVG00015131001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (189 aa)	•		0.451
	GSVIVG00010970001	RecName- Full=Aminomethyltransferase; EC=2.1.2.10;; The glycine cleavage system catalyzes the d [...] (408 aa)	•		0.442
	GSVIVG00036740001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (456 aa)	•	•	0.441
	GSVIVG00030474001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (329 aa)	•		0.427

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		811
COG1331		667	COG1331, COG1331, Highly conserved protein contain	0.0
pfam03190		163	pfam03190, DUF255, Protein of unknown function, DU	2e-74
cd02955		124	cd02955, SSP411, TRX domain, SSP411 protein family	4e-54
pfam13899		81	pfam13899, Thioredoxin_7, Thioredoxin-like	1e-08
cd02953		104	cd02953, DsbDgamma, DsbD gamma family; DsbD gamma	3e-04
pfam13098		105	pfam13098, Thioredoxin_2, Thioredoxin-like domain	0.002

>gnl\|CDD\|224250 COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

 Score =  614 bits (1585), Expect = 0.0
 Identities = 278/740 (37%), Positives = 371/740 (50%), Gaps = 115/740 (15%)

Query: 102 TNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESF 161
            NRL  E SPYLLQHAHNPVDW+ WGEEAFA+A++ D PI LSIGYSTCHWCHVM  ESF
Sbjct: 7   PNRLINEKSPYLLQHAHNPVDWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESF 66

Query: 162 EDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGW----------------- 204
           ED  +A +LN+ FV +KVDREERPDVD +YM   QA+ G GGW                 
Sbjct: 67  EDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLTVFLTPDGKPFFAGT 126

Query: 205 ------------------KVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLPDELP 246
                              +++ W + R+ L QS     E++ EAL   A  +   +EL 
Sbjct: 127 YFPKEDRYGRPGFKQLLEAIRETWREDREELLQSA----ERVLEALEGLARPSA-GEELD 181

Query: 247 QNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMV 306
           +  L   AE L++S+D  +GGFGSAPKFP P  +  +L +S +  D            MV
Sbjct: 182 EEVLDRAAEALARSFDREYGGFGSAPKFPPPHLLLFLLRYSLRTGD-------ERALDMV 234

Query: 307 LFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFY 366
           L TL  MA+GGI+DH+GGGF RYS D  W VPHFEKMLYD   L   Y +A+  T D  Y
Sbjct: 235 LRTLDAMARGGIYDHLGGGFFRYSTDREWLVPHFEKMLYDNALLLRAYAEAYRATGDDLY 294

Query: 367 SYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHA 426
                 ILDYL R++  P G  +S+ DADS + E      EG +Y W+ +E++++LGE A
Sbjct: 295 RRAAEGILDYLLRELYSPEGGFYSSLDADS-DGE------EGKYYTWSVEELKEVLGEDA 347

Query: 427 ILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGEC 486
            L  +++ +   GN            F+G+NVL        +  +    LE         
Sbjct: 348 ELACKYFDVSEEGN------------FEGRNVLHVPGPLEEAIEEAEEKLE-------RA 388

Query: 487 RRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEY 546
           R KL   R KR +P  DDKV+  WNGL+I++ A A ++L                   EY
Sbjct: 389 REKLLAAREKRKQPSRDDKVLTDWNGLMIAALAEAGRVL----------------GDPEY 432

Query: 547 MEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKW 606
           +E AE AA FI  +LY     RL   +R G +   G L+DYAFLI GLL LYE      +
Sbjct: 433 LEAAERAADFILDNLYV---DRLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAY 489

Query: 607 LVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLA 666
           L  AIEL +     F D + GG+++T  +   +L+R KE  DGA PSGN+V+   L+RL+
Sbjct: 490 LEKAIELADEAIADFWD-DEGGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLS 548

Query: 667 SIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLMCCAADMLSVPSRKHVVLVGHKSSV 726
            +   ++   Y + AE  L  F    +    A   +  AA+ L +     +V+ G   S 
Sbjct: 549 LLTGDAR---YLEAAEDILQAFAGLAERAPFAHAGLLLAAEFL-ISGPLVIVVAGDPRS- 603

Query: 727 DFENMLAAAHASYDLNKTVIHIDPADTEEMDFWEEHNSNNASMARNNFSADKVVALVCQN 786
               +L AA   Y   K ++             E + S                A VC  
Sbjct: 604 ---ELLRAALRLYLPEKVLVVGT----------EGYVSLLVDGMLGGGKT----AYVCTG 646

Query: 787 FSCSPPVTDPISLENLLLEK 806
            +C PPVT P  L  LL   
Sbjct: 647 DACLPPVTSPEELAELLAVL 666

Length = 667

>gnl\|CDD\|202571 pfam03190, DUF255, Protein of unknown function, DUF255	Back alignment and domain information

>gnl\|CDD\|239253 cd02955, SSP411, TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif	Back alignment and domain information

>gnl\|CDD\|222442 pfam13899, Thioredoxin_7, Thioredoxin-like	Back alignment and domain information

>gnl\|CDD\|239251 cd02953, DsbDgamma, DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD	Back alignment and domain information

>gnl\|CDD\|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		811
COG1331		667	Highly conserved protein containing a thioredoxin	100.0
KOG2244		786	consensus Highly conserved protein containing a th	100.0
PF03190		163	Thioredox_DsbH: Protein of unknown function, DUF25	100.0
cd00249		384	AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d	99.92
cd00249		384	AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d	99.87
cd02955		124	SSP411 TRX domain, SSP411 protein family; members	99.85
PF07221		346	GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN	99.75
COG2942		388	N-acyl-D-glucosamine 2-epimerase [Carbohydrate tra	99.62
PF13899		82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	99.61
cd02960		130	AGR Anterior Gradient (AGR) family; members of thi	99.55
PF03663		370	Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int	99.52
COG1331		667	Highly conserved protein containing a thioredoxin	99.46
PF07221		346	GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN	99.41
cd02959		117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.28
cd02958		114	UAS UAS family; UAS is a domain of unknown functio	99.21
PF03663		370	Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int	99.16
smart00594		122	UAS UAS domain.	99.04
KOG2244		786	consensus Highly conserved protein containing a th	98.99
cd02951		125	SoxW SoxW family; SoxW is a bacterial periplasmic	98.96
cd04791		321	LanC_SerThrkinase Lanthionine synthetase C-like do	98.9
cd02953		104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	98.88
PRK00293		571	dipZ thiol:disulfide interchange protein precursor	98.73
PF07470		336	Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte	98.68
COG2942		388	N-acyl-D-glucosamine 2-epimerase [Carbohydrate tra	98.65
COG4232		569	Thiol:disulfide interchange protein [Posttranslati	98.59
cd02991		116	UAS_ETEA UAS family, ETEA subfamily; composed of p	98.39
cd04791		321	LanC_SerThrkinase Lanthionine synthetase C-like do	98.34
PF07944		520	DUF1680: Putative glycosyl hydrolase of unknown fu	98.24
PLN00410		142	U5 snRNP protein, DIM1 family; Provisional	98.2
cd02986		114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	98.12
cd02954		114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	98.11
PF13098		112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	98.06
COG4225		357	Predicted unsaturated glucuronyl hydrolase involve	97.92
cd02949		97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	97.89
PRK10996		139	thioredoxin 2; Provisional	97.81
PF07470		336	Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte	97.78
KOG0910		150	consensus Thioredoxin-like protein [Posttranslatio	97.77
cd02984		97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	97.74
cd02948		102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	97.72
cd02997		104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	97.72
cd02950		142	TxlA TRX-like protein A (TxlA) family; TxlA was or	97.71
PHA02278		103	thioredoxin-like protein	97.69
cd02956		96	ybbN ybbN protein family; ybbN is a hypothetical p	97.69
cd03003		101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	97.65
cd04792		825	LanM-like LanM-like proteins. LanM is a bifunction	97.64
PF06662		189	C5-epim_C: D-glucuronyl C5-epimerase C-terminus; I	97.61
cd04434		343	LanC_like LanC-like proteins. LanC is the cyclase	97.61
TIGR01126		102	pdi_dom protein disulfide-isomerase domain. This m	97.6
cd03006		113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	97.58
cd02961		101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	97.57
cd02993		109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	97.56
cd02996		108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	97.51
cd03000		104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	97.5
PF07944		520	DUF1680: Putative glycosyl hydrolase of unknown fu	97.49
cd02985		103	TRX_CDSP32 TRX family, chloroplastic drought-induc	97.48
cd03004		104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	97.47
cd04793		382	LanC LanC is the cyclase enzyme of the lanthionine	97.45
KOG0907		106	consensus Thioredoxin [Posttranslational modificat	97.42
cd02995		104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	97.39
PTZ00051		98	thioredoxin; Provisional	97.32
cd02963		111	TRX_DnaJ TRX domain, DnaJ domain containing protei	97.3
cd02999		100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	97.28
cd02947		93	TRX_family TRX family; composed of two groups: Gro	97.26
TIGR01295		122	PedC_BrcD bacteriocin transport accessory protein,	97.26
cd02989		113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	97.25
COG2143		182	Thioredoxin-related protein [Posttranslational mod	97.24
cd03002		109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	97.2
cd02952		119	TRP14_like Human TRX-related protein 14 (TRP14)-li	97.2
TIGR01068		101	thioredoxin thioredoxin. Several proteins, such as	97.17
COG4225		357	Predicted unsaturated glucuronyl hydrolase involve	97.17
PF00085		103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	97.15
cd02962		152	TMX2 TMX2 family; composed of proteins similar to	97.15
COG3533		589	Uncharacterized protein conserved in bacteria [Fun	97.07
cd03005		102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	97.07
cd03001		103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	97.07
PRK09381		109	trxA thioredoxin; Provisional	97.05
PF06662		189	C5-epim_C: D-glucuronyl C5-epimerase C-terminus; I	96.99
cd02998		105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	96.99
cd02975		113	PfPDO_like_N Pyrococcus furiosus protein disulfide	96.9
PF00759		444	Glyco_hydro_9: Glycosyl hydrolase family 9; InterP	96.88
COG3533		589	Uncharacterized protein conserved in bacteria [Fun	96.88
PLN03009		495	cellulase	96.82
cd02994		101	PDI_a_TMX PDIa family, TMX subfamily; composed of	96.8
PTZ00443		224	Thioredoxin domain-containing protein; Provisional	96.78
PTZ00470		522	glycoside hydrolase family 47 protein; Provisional	96.74
cd02992		114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	96.6
cd04794		343	euk_LANCL eukaryotic Lanthionine synthetase C-like	96.6
PLN02420		525	endoglucanase	96.52
COG4403		963	LcnDR2 Lantibiotic modifying enzyme [Defense mecha	96.52
TIGR01130		462	ER_PDI_fam protein disulfide isomerases, eukaryoti	96.51
cd04434		343	LanC_like LanC-like proteins. LanC is the cyclase	96.51
PLN02345		469	endoglucanase	96.5
PLN02266		510	endoglucanase	96.5
cd04792		825	LanM-like LanM-like proteins. LanM is a bifunction	96.49
PF06917		557	Pectate_lyase_2: Periplasmic pectate lyase; InterP	96.48
cd02889		348	SQCY Squalene cyclase (SQCY) domain; found in clas	96.46
PLN02340		614	endoglucanase	96.44
PLN02909		486	Endoglucanase	96.42
PLN02171		629	endoglucanase	96.41
COG3118		304	Thioredoxin domain-containing protein [Posttransla	96.41
cd02957		113	Phd_like Phosducin (Phd)-like family; composed of	96.35
KOG2787		403	consensus Lanthionine synthetase C-like protein 1	96.34
PHA02125		75	thioredoxin-like protein	96.27
PLN02613		498	endoglucanase	96.2
cd02965		111	HyaE HyaE family; HyaE is also called HupG and Hox	96.19
PTZ00102		477	disulphide isomerase; Provisional	96.16
TIGR00424		463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	96.11
PTZ00470		522	glycoside hydrolase family 47 protein; Provisional	96.09
PLN02308		492	endoglucanase	96.02
TIGR00385		173	dsbE periplasmic protein thiol:disulfide oxidoredu	96.01
PLN00119		489	endoglucanase	95.99
PF01532		452	Glyco_hydro_47: Glycosyl hydrolase family 47; Inte	95.92
PLN02309		457	5'-adenylylsulfate reductase	95.92
PF01532		452	Glyco_hydro_47: Glycosyl hydrolase family 47; Inte	95.87
PF05147		355	LANC_like: Lanthionine synthetase C-like protein;	95.86
PTZ00102		477	disulphide isomerase; Provisional	95.86
cd03011		123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	95.67
cd03010		127	TlpA_like_DsbE TlpA-like family, DsbE (also known	95.65
cd02987		175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	95.51
TIGR02187		215	GlrX_arch Glutaredoxin-like domain protein. This f	95.48
cd03065		120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	95.47
cd02964		132	TryX_like_family Tryparedoxin (TryX)-like family;	95.29
cd03008		146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	95.28
cd04793		382	LanC LanC is the cyclase enzyme of the lanthionine	95.28
TIGR00411		82	redox_disulf_1 small redox-active disulfide protei	95.26
cd02982		103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	95.15
PRK15412		185	thiol:disulfide interchange protein DsbE; Provisio	95.15
KOG0908		288	consensus Thioredoxin-like protein [Posttranslatio	95.14
cd03009		131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	95.11
cd04794		343	euk_LANCL eukaryotic Lanthionine synthetase C-like	95.03
PLN02175		484	endoglucanase	95.01
cd02892		634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	94.95
TIGR01577		616	oligosac_amyl oligosaccharide amylase. The name of	94.91
cd02966		116	TlpA_like_family TlpA-like family; composed of Tlp	94.75
cd02967		114	mauD Methylamine utilization (mau) D family; mauD	94.74
PF13905		95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	94.63
COG4833		377	Predicted glycosyl hydrolase [Carbohydrate transpo	94.61
cd02973		67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	94.57
cd02990		136	UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1	94.57
TIGR01130		462	ER_PDI_fam protein disulfide isomerases, eukaryoti	94.2
cd03026		89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	93.6
TIGR02740		271	TraF-like TraF-like protein. This protein is relat	93.51
PF06917		557	Pectate_lyase_2: Periplasmic pectate lyase; InterP	93.06
cd01659		69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	92.54
COG0526		127	TrxA Thiol-disulfide isomerase and thioredoxins [P	92.3
TIGR00412		76	redox_disulf_2 small redox-active disulfide protei	92.3
cd03007		116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	92.06
cd02896		297	complement_C3_C4_C5 Proteins similar to C3, C4 and	92.02
cd02892		634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	91.96
TIGR01507		635	hopene_cyclase squalene-hopene cyclase. SHC is an	91.92
TIGR01626		184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	91.84
PF06202		370	GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR	91.8
TIGR02187		215	GlrX_arch Glutaredoxin-like domain protein. This f	91.79
TIGR02738		153	TrbB type-F conjugative transfer system pilin asse	91.73
PRK14018		521	trifunctional thioredoxin/methionine sulfoxide red	91.72
KOG0190		493	consensus Protein disulfide isomerase (prolyl 4-hy	91.46
KOG2204		625	consensus Mannosyl-oligosaccharide alpha-1,2-manno	90.62
COG4403		963	LcnDR2 Lantibiotic modifying enzyme [Defense mecha	90.54
TIGR02661		189	MauD methylamine dehydrogenase accessory protein M	90.39
PF08534		146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	90.37
PRK03147		173	thiol-disulfide oxidoreductase; Provisional	90.17
TIGR01577		616	oligosac_amyl oligosaccharide amylase. The name of	89.93
PTZ00062		204	glutaredoxin; Provisional	89.53
cd02988		192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	89.41
KOG2204		625	consensus Mannosyl-oligosaccharide alpha-1,2-manno	88.53
PF05147		355	LANC_like: Lanthionine synthetase C-like protein;	88.17
cd03012		126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	88.11
TIGR02474		290	pec_lyase pectate lyase, PelA/Pel-15E family. Memb	87.63
KOG2431		546	consensus 1, 2-alpha-mannosidase [Carbohydrate tra	87.53
TIGR03463		634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	87.47
KOG1752		104	consensus Glutaredoxin and related proteins [Postt	86.99
PF00759		444	Glyco_hydro_9: Glycosyl hydrolase family 9; InterP	86.83
TIGR02180		84	GRX_euk Glutaredoxin. This model represents eukary	86.54
PLN02919		1057	haloacid dehalogenase-like hydrolase family protei	86.12
PRK13728		181	conjugal transfer protein TrbB; Provisional	86.06
cd02889		348	SQCY Squalene cyclase (SQCY) domain; found in clas	86.05
KOG2429		622	consensus Glycosyl hydrolase, family 47 [Carbohydr	86.05
PLN02399		236	phospholipid hydroperoxide glutathione peroxidase	85.96
cd02968		142	SCO SCO (an acronym for Synthesis of Cytochrome c	85.83
PF06110		119	DUF953: Eukaryotic protein of unknown function (DU	85.56
cd00688		300	ISOPREN_C2_like This group contains class II terpe	85.19
PRK11097		376	endo-1,4-D-glucanase; Provisional	85.14
TIGR02474		290	pec_lyase pectate lyase, PelA/Pel-15E family. Memb	85.14
PLN02993		763	lupeol synthase	84.99
KOG0190		493	consensus Protein disulfide isomerase (prolyl 4-hy	84.78
KOG2501		157	consensus Thioredoxin, nucleoredoxin and related p	84.53
cd03419		82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	84.38
TIGR01787		621	squalene_cyclas squalene/oxidosqualene cyclases. T	84.13
TIGR00365		97	monothiol glutaredoxin, Grx4 family. The gene for	84.01
PF05592		509	Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; Int	83.97
TIGR02189		99	GlrX-like_plant Glutaredoxin-like family. This fam	83.86
PTZ00056		199	glutathione peroxidase; Provisional	83.83
PLN03012		759	Camelliol C synthase	83.4
TIGR02200		77	GlrX_actino Glutaredoxin-like protein. This family	83.4
KOG2431		546	consensus 1, 2-alpha-mannosidase [Carbohydrate tra	82.93
KOG0191		383	consensus Thioredoxin/protein disulfide isomerase	82.92
PF06202		370	GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR	82.88
TIGR02196		74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	82.76
cd00340		152	GSH_Peroxidase Glutathione (GSH) peroxidase family	82.64
PLN02993		763	lupeol synthase	82.43
KOG4277		468	consensus Uncharacterized conserved protein, conta	82.14
KOG3425		128	consensus Uncharacterized conserved protein [Funct	81.86
PF09492		289	Pec_lyase: Pectic acid lyase; InterPro: IPR012669	81.24
TIGR01561		575	gde_arch glycogen debranching enzyme, archaeal typ	81.0
PF07678		246	A2M_comp: A-macroglobulin complement component; In	80.46

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=3.9e-164  Score=1391.70  Aligned_cols=626  Identities=44%  Similarity=0.735  Sum_probs=584.2

Q ss_pred             ccccccccCCChhhhcccCCCCccccChHHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEE
Q 003553          100 KHTNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKV  179 (811)
Q Consensus       100 ~~~NrL~~e~SpYL~qH~~~~v~W~~~~~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkv  179 (811)
                      .++|||++|+|||||||++|||+|+||++|||++||++||||||||||+||||||||++|||+||+||++||++||+|||
T Consensus         5 ~~~NrL~~e~SpYL~~ha~nPV~W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKV   84 (667)
T COG1331           5 SMPNRLINEKSPYLLQHAHNPVDWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKV   84 (667)
T ss_pred             CcCccCccCCCHHHHhccCCCccccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeE
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccHHHHHHHHHHHhccCcCe-----------------------------------eehhhhhhchHHHHHHHHHH
Q 003553          180 DREERPDVDKVYMTYVQALYGGGGW-----------------------------------KVKDAWDKKRDMLAQSGAFA  224 (811)
Q Consensus       180 D~ee~pdi~~~y~~~~q~~~g~gGW-----------------------------------~i~~~w~~~r~~~~~~a~~i  224 (811)
                      |||||||||++||++||+|||+|||                                   +|.+.|+++|++++++|+.+
T Consensus        85 DREERPDvD~~Ym~~~q~~tG~GGWPLtVfLTPd~kPFfagTY~P~e~r~g~pGf~~lL~~i~~~W~edr~~~~~~a~~~  164 (667)
T COG1331          85 DREERPDVDSLYMNASQAITGQGGWPLTVFLTPDGKPFFAGTYFPKEDRYGRPGFKQLLEAIRETWREDREELLQSAERV  164 (667)
T ss_pred             ChhhccCHHHHHHHHHHHhccCCCCceeEEECCCCceeeeeeecCCcccCCCcCHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999999999999999999999999                                   89999999999999999999


Q ss_pred             HHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCCChhHHHHHHHhhhhccccCCCCCCHHHHH
Q 003553          225 IEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQK  304 (811)
Q Consensus       225 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~GGfg~aPKFP~p~~l~~Ll~~~~~~~~~~~~~~~~~~~~  304 (811)
                      .+.++....+     ..+..++++.+++++++|.+.||++|||||++||||+|+.+.|||+++.+++       ++++++
T Consensus       165 ~~~l~~~~~~-----~~~~~l~~~~l~~~~~~l~~~~D~~~GGfg~~pKFP~~~~l~~Llr~~~~~~-------d~~~~~  232 (667)
T COG1331         165 LEALEGLARP-----SAGEELDEEVLDRAAEALARSFDREYGGFGSAPKFPPPHLLLFLLRYSLRTG-------DERALD  232 (667)
T ss_pred             HHHHHhccCC-----CccccCChHHHHHHHHHHHHhcchhhCCcCCCCCCCChHHHHHHHHHHHhhC-------CHHHHH
Confidence            9999875422     1223567788999999999999999999999999999999999999987754       479999


Q ss_pred             HHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC
Q 003553          305 MVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP  384 (811)
Q Consensus       305 ~~~~TL~~Ma~GGi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~p  384 (811)
                      |+++||++|+.||||||+||||||||||+.|.||||||||||||+|+.+|++||++|||++|+++|++|++||+|+|++|
T Consensus       233 ~~~~TL~~ma~GGIyDhlgGGF~RYStD~~WlvPHFEKMLyDnA~l~~~y~~ay~~tgd~~y~~~a~~i~~~l~rel~sp  312 (667)
T COG1331         233 MVLRTLDAMARGGIYDHLGGGFFRYSTDREWLVPHFEKMLYDNALLLRAYAEAYRATGDDLYRRAAEGILDYLLRELYSP  312 (667)
T ss_pred             HHHHHHHHHHccCCccccCCceeeeecCCceechhHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeeccCCcccccCcccccCCceeeecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCC
Q 003553          385 GGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELND  464 (811)
Q Consensus       385 ~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~  464 (811)
                      +||||+|+|||++       ++||+||+||.+||+++||+++++|+++|+|+++||            |+|+||||+..+
T Consensus       313 ~ggFyss~DAD~~-------g~EG~~Y~Ws~eEi~~~Lg~d~~~~~~~f~vs~~Gn------------feGrnvL~~~~~  373 (667)
T COG1331         313 EGGFYSSLDADSD-------GEEGKYYTWSVEELKEVLGEDAELACKYFDVSEEGN------------FEGRNVLHVPGP  373 (667)
T ss_pred             CCceeecccccCc-------ccCCCeeecCHHHHHHHhcccHHHHHHHcccCCCCC------------cCCceeecccCc
Confidence            9999999999995       699999999999999999999999999999999999            579999999988


Q ss_pred             chHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCcchhhccHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChH
Q 003553          465 SSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRK  544 (811)
Q Consensus       465 ~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~  544 (811)
                      .++ +      ++++.++++.+|+||+.+|++|++|++||||+|+||||||.||+.|++++++                +
T Consensus       374 ~~~-~------~~~~~~~l~~~r~kL~~~R~~R~~P~~Ddkvlt~wNglmi~aLa~a~~~~~d----------------~  430 (667)
T COG1331         374 LEE-A------IEEAEEKLERAREKLLAAREKRKQPSRDDKVLTDWNGLMIAALAEAGRVLGD----------------P  430 (667)
T ss_pred             hhh-h------hhhhHHHHHHHHHHHHHHHHhCCCCCCCcceeeccHHHHHHHHHHHHHHcCC----------------h
Confidence            765 2      7888999999999999999999999999999999999999999999999998                8


Q ss_pred             HHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc
Q 003553          545 EYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDR  624 (811)
Q Consensus       545 ~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~  624 (811)
                      +|++.|+++++||.+.+++   ++|.|.+++|.....++++|||++|.|+|+||++|+|.+||+.|++|++.+++.|||+
T Consensus       431 ~~l~~A~~~~~fi~~~l~~---~rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A~~L~~~~i~~f~d~  507 (667)
T COG1331         431 EYLEAAERAADFILDNLYV---DRLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKAIELADEAIADFWDD  507 (667)
T ss_pred             HHHHHHHHHHHHHHHhhcc---cchheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999997   3899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 003553          625 EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLMCC  704 (811)
Q Consensus       625 ~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~~~~~~l~  704 (811)
                      + ||||+++.+++.+++|+++..|+++||+||+++.+|++|+.+||+   ..|.+.|+++|+.|.+.+.++|.++++++.
T Consensus       508 ~-gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~---~~y~e~A~~~L~a~~~~~~~~p~~~~~~~~  583 (667)
T COG1331         508 E-GGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGD---ARYLEAAEDILQAFAGLAERAPFAHAGLLL  583 (667)
T ss_pred             C-CCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCc---hhHHHHHHHHHHHHHHHHHhCCccchHHHH
Confidence            8 779999999999999999999999999999999999999999996   889999999999999999999999999999


Q ss_pred             HHHHhcCCCccEEEEecCCCchhHHHHHHHHHhcCCCCeEEEEeCCCCcchhhhhhhccccchhhhcccCCCCccEEEEc
Q 003553          705 AADMLSVPSRKHVVLVGHKSSVDFENMLAAAHASYDLNKTVIHIDPADTEEMDFWEEHNSNNASMARNNFSADKVVALVC  784 (811)
Q Consensus       705 a~~~~~~~~~~~vvivg~~~~~~~~~ll~~~~~~~~P~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~tayVC  784 (811)
                      +++.+..+ +.+|||+|    ....++++++.+.|+|++++++...+..             .++.+...++|+ ++|||
T Consensus       584 a~~~~~~~-~~~ivvv~----~~~~~~~~~~~~~~~P~~~l~~~~~~~~-------------~~~~~~~l~~g~-~ayvC  644 (667)
T COG1331         584 AAEFLISG-PLVIVVAG----DPRSELLRAALRLYLPEKVLVVGTEGYV-------------SLLVDGMLGGGK-TAYVC  644 (667)
T ss_pred             HHHHHcCC-ceEEEEeC----CCcHHHHHHHHhcCCcceEEEEeccccc-------------CcchhhccCCCC-eEEEe
Confidence            99998866 58888888    2346799999999999999987644311             111111112445 99999


Q ss_pred             cCCccCCCCCCHHHHHHHhhc
Q 003553          785 QNFSCSPPVTDPISLENLLLE  805 (811)
Q Consensus       785 ~~~~C~~Pvt~~~~L~~~L~~  805 (811)
                      +|++|++||+++++|.++|..
T Consensus       645 ~~~~C~~P~~~~e~l~~~l~~  665 (667)
T COG1331         645 TGDACLPPVTSPEELAELLAV  665 (667)
T ss_pred             cCCccCCCcCCHHHHHHHHhh
Confidence            999999999999999999975

>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]	Back alignment and domain information

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins	Back alignment and domain information

>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid	Back alignment and domain information

>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid	Back alignment and domain information

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif	Back alignment and domain information

>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5	Back alignment and domain information

>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A	Back alignment and domain information

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus	Back alignment and domain information

>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3	Back alignment and domain information

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5	Back alignment and domain information

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain	Back alignment and domain information

>cd02958 UAS UAS family; UAS is a domain of unknown function	Back alignment and domain information

>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3	Back alignment and domain information

>smart00594 UAS UAS domain	Back alignment and domain information

>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]	Back alignment and domain information

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation	Back alignment and domain information

>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases	Back alignment and domain information

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD	Back alignment and domain information

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional	Back alignment and domain information

>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases []	Back alignment and domain information

>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]	Back alignment and domain information

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals	Back alignment and domain information

>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases	Back alignment and domain information

>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function	Back alignment and domain information

>PLN00410 U5 snRNP protein, DIM1 family; Provisional	Back alignment and domain information

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1	Back alignment and domain information

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein	Back alignment and domain information

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A	Back alignment and domain information

>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]	Back alignment and domain information

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains	Back alignment and domain information

>PRK10996 thioredoxin 2; Provisional	Back alignment and domain information

>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases []	Back alignment and domain information

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes	Back alignment and domain information

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein	Back alignment and domain information

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)	Back alignment and domain information

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus	Back alignment and domain information

>PHA02278 thioredoxin-like protein	Back alignment and domain information

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain	Back alignment and domain information

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains	Back alignment and domain information

>cd04792 LanM-like LanM-like proteins	Back alignment and domain information

>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region	Back alignment and domain information

>cd04434 LanC_like LanC-like proteins	Back alignment and domain information

>TIGR01126 pdi_dom protein disulfide-isomerase domain	Back alignment and domain information

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox	Back alignment and domain information

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants	Back alignment and domain information

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases	Back alignment and domain information

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention	Back alignment and domain information

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus	Back alignment and domain information

>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function	Back alignment and domain information

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif	Back alignment and domain information

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains	Back alignment and domain information

>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase	Back alignment and domain information

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1	Back alignment and domain information

>PTZ00051 thioredoxin; Provisional	Back alignment and domain information

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain	Back alignment and domain information

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44	Back alignment and domain information

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	Back alignment and domain information

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative	Back alignment and domain information

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif	Back alignment and domain information

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein	Back alignment and domain information

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1	Back alignment and domain information

>TIGR01068 thioredoxin thioredoxin	Back alignment and domain information

>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]	Back alignment and domain information

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms	Back alignment and domain information

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library	Back alignment and domain information

>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains	Back alignment and domain information

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)	Back alignment and domain information

>PRK09381 trxA thioredoxin; Provisional	Back alignment and domain information

>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region	Back alignment and domain information

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5	Back alignment and domain information

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding	Back alignment and domain information

>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3	Back alignment and domain information

>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PLN03009 cellulase	Back alignment and domain information

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX	Back alignment and domain information

>PTZ00443 Thioredoxin domain-containing protein; Provisional	Back alignment and domain information

>PTZ00470 glycoside hydrolase family 47 protein; Provisional	Back alignment and domain information

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein	Back alignment and domain information

>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein	Back alignment and domain information

>PLN02420 endoglucanase	Back alignment and domain information

>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]	Back alignment and domain information

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic	Back alignment and domain information

>cd04434 LanC_like LanC-like proteins	Back alignment and domain information

>PLN02345 endoglucanase	Back alignment and domain information

>PLN02266 endoglucanase	Back alignment and domain information

>cd04792 LanM-like LanM-like proteins	Back alignment and domain information

>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins	Back alignment and domain information

>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	Back alignment and domain information

>PLN02340 endoglucanase	Back alignment and domain information

>PLN02909 Endoglucanase	Back alignment and domain information

>PLN02171 endoglucanase	Back alignment and domain information

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions	Back alignment and domain information

>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]	Back alignment and domain information

>PHA02125 thioredoxin-like protein	Back alignment and domain information

>PLN02613 endoglucanase	Back alignment and domain information

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO	Back alignment and domain information

>PTZ00102 disulphide isomerase; Provisional	Back alignment and domain information

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent	Back alignment and domain information

>PTZ00470 glycoside hydrolase family 47 protein; Provisional	Back alignment and domain information

>PLN02308 endoglucanase	Back alignment and domain information

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily	Back alignment and domain information

>PLN00119 endoglucanase	Back alignment and domain information

>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3	Back alignment and domain information

>PLN02309 5'-adenylylsulfate reductase	Back alignment and domain information

>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3	Back alignment and domain information

>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others

Back alignment and domain information

>PTZ00102 disulphide isomerase; Provisional	Back alignment and domain information

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif	Back alignment and domain information

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif	Back alignment and domain information

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions	Back alignment and domain information

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein	Back alignment and domain information

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle	Back alignment and domain information

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX	Back alignment and domain information

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors	Back alignment and domain information

>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase	Back alignment and domain information

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1	Back alignment and domain information

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants	Back alignment and domain information

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional	Back alignment and domain information

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif	Back alignment and domain information

>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein	Back alignment and domain information

>PLN02175 endoglucanase	Back alignment and domain information

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	Back alignment and domain information

>TIGR01577 oligosac_amyl oligosaccharide amylase	Back alignment and domain information

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins	Back alignment and domain information

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source	Back alignment and domain information

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A	Back alignment and domain information

>COG4833 Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)	Back alignment and domain information

>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain	Back alignment and domain information

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic	Back alignment and domain information

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides	Back alignment and domain information

>TIGR02740 TraF-like TraF-like protein	Back alignment and domain information

>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins	Back alignment and domain information

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold	Back alignment and domain information

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]	Back alignment and domain information

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2	Back alignment and domain information

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells	Back alignment and domain information

>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement	Back alignment and domain information

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	Back alignment and domain information

>TIGR01507 hopene_cyclase squalene-hopene cyclase	Back alignment and domain information

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626	Back alignment and domain information

>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT	Back alignment and domain information

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein	Back alignment and domain information

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB	Back alignment and domain information

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional	Back alignment and domain information

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]	Back alignment and domain information

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD	Back alignment and domain information

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins	Back alignment and domain information

>PRK03147 thiol-disulfide oxidoreductase; Provisional	Back alignment and domain information

>TIGR01577 oligosac_amyl oligosaccharide amylase	Back alignment and domain information

>PTZ00062 glutaredoxin; Provisional	Back alignment and domain information

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis	Back alignment and domain information

>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	Back alignment and domain information

Back alignment and domain information

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain	Back alignment and domain information

>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family	Back alignment and domain information

>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase	Back alignment and domain information

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3	Back alignment and domain information

>TIGR02180 GRX_euk Glutaredoxin	Back alignment and domain information

>PLN02919 haloacid dehalogenase-like hydrolase family protein	Back alignment and domain information

>PRK13728 conjugal transfer protein TrbB; Provisional	Back alignment and domain information

>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	Back alignment and domain information

>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]	Back alignment and domain information

>PLN02399 phospholipid hydroperoxide glutathione peroxidase	Back alignment and domain information

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	Back alignment and domain information

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like	Back alignment and domain information

>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement	Back alignment and domain information

>PRK11097 endo-1,4-D-glucanase; Provisional	Back alignment and domain information

>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family	Back alignment and domain information

>PLN02993 lupeol synthase	Back alignment and domain information

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]	Back alignment and domain information

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain	Back alignment and domain information

>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases	Back alignment and domain information

>TIGR00365 monothiol glutaredoxin, Grx4 family	Back alignment and domain information

>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes	Back alignment and domain information

>TIGR02189 GlrX-like_plant Glutaredoxin-like family	Back alignment and domain information

>PTZ00056 glutathione peroxidase; Provisional	Back alignment and domain information

>PLN03012 Camelliol C synthase	Back alignment and domain information

>TIGR02200 GlrX_actino Glutaredoxin-like protein	Back alignment and domain information

>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT	Back alignment and domain information

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family	Back alignment and domain information

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate	Back alignment and domain information

>PLN02993 lupeol synthase	Back alignment and domain information

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]	Back alignment and domain information

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4	Back alignment and domain information

>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative	Back alignment and domain information

>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		811
3ira_A		173	The Crystal Structure Of One Domain Of The Conserve		1e-33

>pdb|3IRA|A Chain A, The Crystal Structure Of One Domain Of The Conserved Protein From Methanosarcina Mazei Go1 Length = 173

Back alignment and structure

Iteration: 1

Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 65/104 (62%), Positives = 75/104 (72%) Query: 103 NRLAAEHSPYLLQHAHNPVDXXXXXXXXXXXXRKRDVPIFLSIGYSTCHWCHVMEVESFE 162 NRL E SPYLLQHA+NPVD RK + P+FLSIGYSTCHWCH+M ESFE Sbjct: 4 NRLIKEKSPYLLQHAYNPVDWYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFE 63 Query: 163 DEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWKV 206 DE VA L+N+ FVSIKVDREERPD+D +YMT Q + G GGW + Sbjct: 64 DEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPL 107

PyMOL of 3ira

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		811
3ira_A		173	Conserved protein; methanosarcina mazei,structural	3e-74
2ju5_A		154	Thioredoxin disulfide isomerase; protein, oxidored	6e-36
3ph9_A		151	Anterior gradient protein 3 homolog; thioredoxin f	8e-29
1sen_A		164	Thioredoxin-like protein P19; endoplasmic reticulu	5e-23
3fk8_A		133	Disulphide isomerase; APC61824.1, xylella fastidio	1e-20
2gz6_A		388	N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C	3e-20
3f9u_A		172	Putative exported cytochrome C biogenesis-related;	5e-20
2lst_A		130	Thioredoxin; structural genomics, NEW YORK structu	8e-15
3gt5_A		402	N-acetylglucosamine 2-epimerase; structural genomi	1e-13
2dlx_A		153	UBX domain-containing protein 7; UAS domain, prote	5e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1fp3_A		402	N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr	5e-07
2kuc_A		130	Putative disulphide-isomerase; structural genomics	1e-05
2fwh_A		134	Thiol:disulfide interchange protein DSBD; thioredo	3e-05

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} Length = 173	Back alignment and structure

 Score =  238 bits (609), Expect = 3e-74
 Identities = 78/170 (45%), Positives = 100/170 (58%), Gaps = 35/170 (20%)

Query: 102 TNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESF 161
            NRL  E SPYLLQHA+NPVDW+ WGEEAF +ARK + P+FLSIGYSTCHWCH+M  ESF
Sbjct: 3   PNRLIKEKSPYLLQHAYNPVDWYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESF 62

Query: 162 EDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGW----------------- 204
           EDE VA L+N+ FVSIKVDREERPD+D +YMT  Q + G GGW                 
Sbjct: 63  EDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLNIIMTPGKKPFFAGT 122

Query: 205 ------------------KVKDAWDKKRDMLAQSGAFAIEQLSEALSASA 236
                             ++K+ W+++ + +  S       + E +  S+
Sbjct: 123 YIPKNTRFNQIGMLELVPRIKEIWEQQHEEVLDSAEKITSTIQEMIKESS 172

PyMOL of 3ira

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} Length = 154	Back alignment and structure

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} Length = 151	Back alignment and structure

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164	Back alignment and structure

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133	Back alignment and structure

>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Length = 388	Back alignment and structure

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} Length = 172	Back alignment and structure

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130	Back alignment and structure

>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Length = 402	Back alignment and structure

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 Length = 153	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Length = 402	Back alignment and structure

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130	Back alignment and structure

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		811
d1fp3a_		402	a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {P	8e-32
d2afaa1		411	a.102.1.3 (A:4-415) Putative NAG isomerase YihS {S	1e-16
d1sena_		135	c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19	3e-14
d2dlxa1		147	c.47.1.24 (A:1-147) UBX domain-containing protein	2e-11
d2c42a1		257	c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreduct	1e-04

>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Length = 402	Back information, alignment and structure


class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: N-acylglucosamine (NAG) epimerase
domain: N-acyl-D-glucosamine 2-epimerase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  126 bits (317), Expect = 8e-32
 Identities = 44/403 (10%), Positives = 93/403 (23%), Gaps = 71/403 (17%)

Query: 257 LSKSYDSRFGGF-------GSAPKFPRPVEIQM-MLYHSKKLEDTGKSGEASEGQKMVLF 308
           L  S+D   GGF       G      + V +Q   ++   +L    +     E       
Sbjct: 27  LEHSHDREHGGFFTCLGRDGRVYDDLKYVWLQGRQVWMYCRLYRKLERFHRPELLDAAKA 86

Query: 309 TLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSY 368
             + + +             + +         ++ ++ +        + + +T +  Y  
Sbjct: 87  GGEFLLRHARVAPPEKKCA-FVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEARYQS 145

Query: 369 ICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAIL 428
              D++D +   +      +   +   +          E          + + LGE    
Sbjct: 146 EAVDMMDQIVHWVREDPSGLGRPQLPGA-------VASESMAVPMMLLCLVEQLGEEDEE 198

Query: 429 FKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRR 488
               Y     G+    R+                                          
Sbjct: 199 LAGRY--AQLGHWCARRILQHVQRDGQ-------------------------------AV 225

Query: 489 KLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYME 548
                           +     + L    F              +        D K    
Sbjct: 226 LENVSEDGEELSGCLGRHQNPGHALEAGWF--------------LLRHSSRSGDAKLRAH 271

Query: 549 VAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDD-------YAFLISGLLDLYEFG 601
           V ++      R  +D   H     F++     P  L+        ++  +   L  Y   
Sbjct: 272 VIDTFLLLPFRSGWDAD-HGGLFYFQDADGLCPTQLEWAMKLWWPHSEAMIAFLMGYSES 330

Query: 602 SGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVK 644
                L    ++       F D E G +F     +  V L +K
Sbjct: 331 GDPALLRLFYQVAEYTFRQFRDPEYGEWFGYLNREGKVALTIK 373

PyMOL of d1fp3a_

>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Length = 411	Back information, alignment and structure

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135	Back information, alignment and structure

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} Length = 147	Back information, alignment and structure

>d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]} Length = 257	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		811
d1fp3a_		402	N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa)	100.0
d2afaa1		411	Putative NAG isomerase YihS {Salmonella typhimuriu	100.0
d1fp3a_		402	N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa)	99.89
d2afaa1		411	Putative NAG isomerase YihS {Salmonella typhimuriu	99.73
d2d5ja1		377	Unsaturated glucuronyl hydrolase {Bacillus sp. GL1	99.58
d1sena_		135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.57
d2dlxa1		147	UBX domain-containing protein 7 {Human (Homo sapie	99.54
d1nc5a_		363	Hypothetical protein YteR {Bacillus subtilis [TaxI	99.28
d2d5ja1		377	Unsaturated glucuronyl hydrolase {Bacillus sp. GL1	99.21
d2fwha1		117	Thiol:disulfide interchange protein DsbD, C-termin	98.8
d1nc5a_		363	Hypothetical protein YteR {Bacillus subtilis [TaxI	98.6
d1g87a1		454	Endo/exocellulase:cellobiose E-4, N-terminal domai	98.52
d1ks8a_		433	Endo-b-1,4-glucanase {Termite (Nasutitermes takasa	98.51
d1ia6a_		431	Nonprocessive cellulase Cel9M {Clostridium cellulo	98.5
d1ep7a_		112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.43
d1qgva_		137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	98.37
d1xfla_		114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	98.24
d1tf4a1		460	Endo/exocellulase:cellobiose E-4, N-terminal domai	98.15
d1dbya_		107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.13
d1ti3a_		113	Thioredoxin {European aspen (Populus tremula), thi	98.13
d1nw2a_		105	Thioredoxin {Alicyclobacillus acidocaldarius, form	98.09
d1clca1		441	CelD cellulase, C-terminal domain {Clostridium the	98.02
d1nxca_		467	Class I alpha-1;2-mannosidase, catalytic domain {M	98.01
d2trxa_		108	Thioredoxin {Escherichia coli [TaxId: 562]}	98.01
d1thxa_		108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	97.92
d1ut9a1		511	Cellulose 1,4-beta-cellobiosidase CbhA {Clostridiu	97.82
d1xwaa_		111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	97.82
d1r26a_		113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	97.78
d1nxca_		467	Class I alpha-1;2-mannosidase, catalytic domain {M	97.75
d2ifqa1		105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	97.75
d1fb6a_		104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	97.73
d1a8la2		107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.64
d1syra_		103	Thioredoxin {Malarial parasite (Plasmodium falcipa	97.61
d2b5ea4		119	Protein disulfide isomerase, PDI {Baker's yeast (S	97.53
d1meka_		120	Protein disulfide isomerase, PDI {Human (Homo sapi	97.45
d1x9da1		453	Class I alpha-1;2-mannosidase, catalytic domain {H	97.41
d1zmaa1		115	Bacterocin transport accessory protein Bta {Strept	97.39
d1gh2a_		107	Thioredoxin-like protein, N-terminal domain {Human	97.37
d1dl2a_		511	Class I alpha-1;2-mannosidase, catalytic domain {B	97.35
d1woua_		119	Putative 42-9-9 protein (thioredoxin containing pr	97.16
d1f9ma_		112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	97.13
d1dl2a_		511	Class I alpha-1;2-mannosidase, catalytic domain {B	97.03
d1hcua_		488	Class I alpha-1;2-mannosidase, catalytic domain {T	96.98
d1fo5a_		85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	96.94
d2ri9a1		475	Class I alpha-1;2-mannosidase, catalytic domain {F	96.92
d1hyua4		96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	96.86
d2g0da1		409	Nisin biosynthesis protein NisC {Lactococcus lacti	96.66
d1z5ye1		136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	96.59
d1x9da1		453	Class I alpha-1;2-mannosidase, catalytic domain {H	96.3
d2hfda1		132	Hydrogenase-1 operon protein HyaE {Escherichia col	96.25
d1nhoa_		85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	96.01
d2b5ea1		140	Protein disulfide isomerase, PDI {Baker's yeast (S	95.86
d2es7a1		119	Hydrogenase-1 operon protein HyaE {Salmonella typh	95.78
d1o73a_		144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	95.45
d1i5ga_		144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	95.4
d1hcua_		488	Class I alpha-1;2-mannosidase, catalytic domain {T	95.39
d1lu4a_		134	Soluble secreted antigen MPT53 {Mycobacterium tube	95.34
d2djja1		116	Protein disulfide isomerase, PDI {Fungi (Humicola	95.29
d2c0ga2		122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	95.23
d1wjka_		100	Thioredoxin-like structure containing protein C330	95.21
d1jfua_		176	Membrane-anchored thioredoxin-like protein TlpA, s	95.1
d1o8xa_		144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	95.04
d2ri9a1		475	Class I alpha-1;2-mannosidase, catalytic domain {F	95.0
d1a8ya1		124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	94.59
d1knga_		144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	93.66
d1zzoa1		134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	93.6
d2fy6a1		143	Peptide methionine sulfoxide reductase MsrA/MsrB,	92.97
d1wzza1		319	Probable endoglucanase CmcAX {Acetobacter xylinus	92.55
d1z6na1		166	Hypothetical protein PA1234 {Pseudomonas aeruginos	92.41
d1st9a_		137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	92.35
d2cvba1		187	Probable thiol-disulfide isomerase/thioredoxin TTH	90.72
d2b5xa1		143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	90.66
d1gxma_		324	Polygalacturonic acid lyase (pectate lyase) {Cellv	89.67
d1ut9a1		511	Cellulose 1,4-beta-cellobiosidase CbhA {Clostridiu	89.26
d1xzoa1		172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	88.84
d1w6ka1		448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	88.22
d2sqca1		352	Squalene-hopene cyclase {Alicyclobacillus acidocal	87.91
d1g7ea_		122	Endoplasmic reticulum protein ERP29, N-terminal do	86.9

>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: N-acylglucosamine (NAG) epimerase
domain: N-acyl-D-glucosamine 2-epimerase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.8e-43  Score=295.92  Aligned_cols=348  Identities=12%  Similarity=0.003  Sum_probs=252.2

Q ss_pred             HHHHHHHHH-HHCCCCCCCC----------CCCCCCCCHH-HHHHHHH-HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             999999998-5012569999----------9999999735-9999998-2421013589987778999999999999818
Q 003553          250 LRLCAEQLS-KSYDSRFGGF----------GSAPKFPRPV-EIQMMLY-HSKKLEDTGKSGEASEGQKMVLFTLQCMAKG  316 (811)
Q Consensus       250 ~~~~~~~l~-~~~D~~~GGf----------g~aPKFP~p~-~l~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~TL~~Ma~G  316 (811)
                      ++.+.-.+. ..+|+++|||          ...||+.... ...+.+. .+....    ..+++..+++|.++++.|.++
T Consensus        19 l~~ilpfW~~~~~D~~~GGf~~~ld~dg~~~~~~k~~~~~~R~l~~fs~a~~~~~----~~~~~~~~~~a~~g~~~L~~~   94 (402)
T d1fp3a_          19 LDRVMAFWLEHSHDREHGGFFTCLGRDGRVYDDLKYVWLQGRQVWMYCRLYRKLE----RFHRPELLDAAKAGGEFLLRH   94 (402)
T ss_dssp             HHHHHHHHHHHSBCTTTSSBCCCBCTTSCBSCCCEEHHHHHHHHHHHHHHHHHCG----GGCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHHHHH
T ss_conf             9999987885580767897214378999857988636554999999999999746----348989999999999999981


Q ss_pred             CCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC
Q ss_conf             98313799189987289977898831588999999999999971599489999999999998716688985454036876
Q 003553          317 GIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADS  396 (811)
Q Consensus       317 Gi~D~igGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~r~l~~~~Ggfysa~DADs  396 (811)
                      |++|+.+|||+ |++|.+|.+||++||+||||.++.+|+++|++||++.|+++|.+|++|+.++|+++.||||++.|+|+
T Consensus        95 ~~~d~~~Gg~~-~~vd~dG~~~~~~k~~Yd~Af~l~a~a~~~~~tg~~~~~~~a~~~~~~i~~~~~~~~~g~~~~~~~~~  173 (402)
T d1fp3a_          95 ARVAPPEKKCA-FVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSGLGRPQLPGA  173 (402)
T ss_dssp             TBSSTTSCCBC-SEECTTSCEEECCSSSHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTCGGGGCCCCCTTS
T ss_pred             CCCCCCCCCEE-EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             88358999889-88789999676545641208999998998860399899999999999999984215688874124787


Q ss_pred             CCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCEEECCCCCHHHHHHCCCC
Q ss_conf             533575554577226632799999840459999988244679975788-8889988778962100247914789870999
Q 003553          397 AETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLS-RMSDPHNEFKGKNVLIELNDSSASASKLGMP  475 (811)
Q Consensus       397 ~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~l~~~~y~i~~~Gn~e~~-~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~  475 (811)
                      .       +.+|.+|.|...|+..+|++........+....+...+.. ...+|    +...++                
T Consensus       174 ~-------~~~g~~~~m~l~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~----------------  226 (402)
T d1fp3a_         174 V-------ASESMAVPMMLLCLVEQLGEEDEELAGRYAQLGHWCARRILQHVQR----DGQAVL----------------  226 (402)
T ss_dssp             C-------CEEETHHHHHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHTTEET----TTTEEC----------------
T ss_pred             C-------CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC----CCHHHH----------------
T ss_conf             5-------4343541799999999973434305799999999999988750165----412577----------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH-
Q ss_conf             89999999999999985221799998873000300899999999-9999932332210136777899918999999999-
Q 003553          476 LEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFA-RASKILKSEAESAMFNFPVVGSDRKEYMEVAESA-  553 (811)
Q Consensus       476 ~~~~~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWNalmI~ALa-~A~~v~~d~~~~~~~~~~~~~~~~~~yl~~A~~~-  553 (811)
                                    .+..++.++.|..|+|+++.||++++..|+ +++.++++                +.+++.|.+. 
T Consensus       227 --------------e~~~~~~~~~~~~~~~~i~pGh~~e~~wLll~a~~~~~~----------------~~~~~~a~~~~  276 (402)
T d1fp3a_         227 --------------ENVSEDGEELSGCLGRHQNPGHALEAGWFLLRHSSRSGD----------------AKLRAHVIDTF  276 (402)
T ss_dssp             --------------SEEETTSCBCCHHHHHEECHHHHHHHHHHHHHHHHHTTC----------------HHHHHHHHHHH
T ss_pred             --------------HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHH
T ss_conf             --------------643146676668344727850235999999999987399----------------04799999999


Q ss_pred             HHHHHHHCCCCCCCEEEEEE-CCCCCCC-----CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             99999854546999389872-3898788-----88701099999999999997299899999999999999872445798
Q 003553          554 ASFIRRHLYDEQTHRLQHSF-RNGPSKA-----PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGG  627 (811)
Q Consensus       554 ~~fl~~~l~d~~~g~l~~~~-~~g~~~~-----~~~leDYA~~i~aLL~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~G  627 (811)
                      ..+..++.||++.|++++.. .+|.+..     .+.+.+||++|.|++.+|++|||+.|+++|.++++.+.++|+|+++|
T Consensus       277 ~~~~~~~g~d~~~ggl~~~~~~~g~~~~~~~~~~k~~W~qaE~i~a~l~ly~~tgd~~~l~~a~~l~~~~~~~f~D~~~G  356 (402)
T d1fp3a_         277 LLLPFRSGWDADHGGLFYFQDADGLCPTQLEWAMKLWWPHSEAMIAFLMGYSESGDPALLRLFYQVAEYTFRQFRDPEYG  356 (402)
T ss_dssp             THHHHHHHBCTTTCSBCSCEETTSCCCSSTTTTCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCTTTS
T ss_pred             HHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99999829557899588875378886655441377787899999999999870499899999999999999868779997


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             233357999964344567889998882899999
Q 003553          628 GYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVI  660 (811)
Q Consensus       628 gff~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~  660 (811)
                      +||..-..+..++...|.. -...|-++..++.
T Consensus       357 ~W~~~~~~~g~~~~~~k~~-p~~~~YH~~ral~  388 (402)
T d1fp3a_         357 EWFGYLNREGKVALTIKGG-PFKGCFHVPRCLA  388 (402)
T ss_dssp             SBCCEECTTSCEEECCSSC-SSCCSSHHHHHHH
T ss_pred             EEEEEECCCCCCCCCCCCC-CCCCCCHHHHHHH
T ss_conf             6674389998998667788-8898461899999

PyMOL of d1fp3a_

>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]}	Back information, alignment and structure

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]}	Back information, alignment and structure

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4, N-terminal domain {Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]}	Back information, alignment and structure

>d1ks8a_ a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasutitermes takasagoensis) [TaxId: 62960]}	Back information, alignment and structure

>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium cellulolyticum [TaxId: 1521]}	Back information, alignment and structure

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}	Back information, alignment and structure

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4, N-terminal domain {Thermomonospora fusca [TaxId: 2021]}	Back information, alignment and structure

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}	Back information, alignment and structure

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}	Back information, alignment and structure

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}	Back information, alignment and structure

>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain {Clostridium thermocellum [TaxId: 1515]}	Back information, alignment and structure

>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	Back information, alignment and structure

>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase CbhA {Clostridium thermocellum [TaxId: 1515]}	Back information, alignment and structure

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	Back information, alignment and structure

>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}	Back information, alignment and structure

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}	Back information, alignment and structure

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}	Back information, alignment and structure

>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Trichoderma reesei [TaxId: 51453]}	Back information, alignment and structure

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d2ri9a1 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosidase, catalytic domain {Fungus (Penicillium citrinum) [TaxId: 5077]}	Back information, alignment and structure

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]}	Back information, alignment and structure

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}	Back information, alignment and structure

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}	Back information, alignment and structure

>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Trichoderma reesei [TaxId: 51453]}	Back information, alignment and structure

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}	Back information, alignment and structure

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}	Back information, alignment and structure

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}	Back information, alignment and structure

>d2ri9a1 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosidase, catalytic domain {Fungus (Penicillium citrinum) [TaxId: 5077]}	Back information, alignment and structure

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}	Back information, alignment and structure

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}	Back information, alignment and structure

>d1wzza1 a.102.1.2 (A:23-341) Probable endoglucanase CmcAX {Acetobacter xylinus [TaxId: 28448]}	Back information, alignment and structure

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}	Back information, alignment and structure

>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase CbhA {Clostridium thermocellum [TaxId: 1515]}	Back information, alignment and structure

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}	Back information, alignment and structure

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure