Citrus Sinensis ID: 003557
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 811 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M8Y0 | 977 | Probable UDP-N-acetylgluc | yes | no | 1.0 | 0.830 | 0.862 | 0.0 | |
| Q27HV0 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.702 | 0.544 | 0.470 | 1e-149 | |
| P56558 | 1036 | UDP-N-acetylglucosamine-- | yes | no | 0.702 | 0.550 | 0.470 | 1e-149 | |
| Q8CGY8 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.702 | 0.544 | 0.470 | 1e-149 | |
| P81436 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.702 | 0.544 | 0.470 | 1e-149 | |
| O15294 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.702 | 0.544 | 0.470 | 1e-149 | |
| O18158 | 1151 | UDP-N-acetylglucosamine-- | no | no | 0.706 | 0.497 | 0.467 | 1e-145 | |
| O82039 | 932 | Probable UDP-N-acetylgluc | N/A | no | 0.907 | 0.789 | 0.276 | 9e-80 | |
| Q8RVB2 | 931 | Probable UDP-N-acetylgluc | N/A | no | 0.908 | 0.791 | 0.276 | 1e-77 | |
| Q6YZI0 | 927 | Probable UDP-N-acetylgluc | no | no | 0.905 | 0.791 | 0.269 | 1e-74 |
| >sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1503 bits (3892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 700/812 (86%), Positives = 759/812 (93%), Gaps = 1/812 (0%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
MRKGRL+EA QCC+QAL+LNPLLVDAHSNLGNLMKAQGL+ EAYSCYLEA+RIQPTFAIA
Sbjct: 166 MRKGRLSEATQCCQQALSLNPLLVDAHSNLGNLMKAQGLIHEAYSCYLEAVRIQPTFAIA 225
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
WSNLAGLFMESGDLNRALQYYKEAVKLKP FPDAYLNLGNVYKALG P EAIMCYQ A+Q
Sbjct: 226 WSNLAGLFMESGDLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQHALQ 285
Query: 121 TRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 179
RPN A+AFGN+AS YYE+GQ D+AI +YKQA+ DPRFLEAYNNLGNALKD+GRVDEA+
Sbjct: 286 MRPNSAMAFGNIASIYYEQGQLDLAIRHYKQALSRDPRFLEAYNNLGNALKDIGRVDEAV 345
Query: 180 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 239
+CYNQCL+LQP+HPQA+ NLGNIYMEWNM+ A+S +KATLAVTTGLSAPFNNLA+IYKQ
Sbjct: 346 RCYNQCLALQPNHPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQ 405
Query: 240 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 299
QGNY+DAISCYNEVLRIDPLAAD LVNRGNTYKEIGRVT+AIQDY+ AI RPTMAEAHA
Sbjct: 406 QGNYSDAISCYNEVLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAINFRPTMAEAHA 465
Query: 300 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGII 359
NLASAYKDSGHVEAAI SYKQALLLRPDFPEATCNLLHTLQCVC WEDR +MF+EVE II
Sbjct: 466 NLASAYKDSGHVEAAITSYKQALLLRPDFPEATCNLLHTLQCVCCWEDRSKMFAEVESII 525
Query: 360 RRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRL 419
RRQ+NMSVLPSVQPFHAIAYPIDP+LALEISRKYA+HCSIIASRF LPPF HP +P++
Sbjct: 526 RRQINMSVLPSVQPFHAIAYPIDPILALEISRKYAAHCSIIASRFGLPPFTHPAGLPVKR 585
Query: 420 DGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEA 479
+GG +RLR+GYVSSDFGNHPLSHLMGSVFGMHN+ENVEVFCYALS ND TEWRQR QSEA
Sbjct: 586 EGGFKRLRIGYVSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSANDNTEWRQRIQSEA 645
Query: 480 EHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG 539
EHF+DVSAMSSD IAK+IN+DKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG
Sbjct: 646 EHFLDVSAMSSDAIAKIINQDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG 705
Query: 540 ASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLP 599
A+YIDYLVTDEFVSPL+YAHIYSEKLVH+PHCYFVNDYKQKN DVLDPN +PKRSDYGLP
Sbjct: 706 ATYIDYLVTDEFVSPLQYAHIYSEKLVHLPHCYFVNDYKQKNQDVLDPNSKPKRSDYGLP 765
Query: 600 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPD 659
EDKFIFACFNQLYKMDPEI NTWCNIL+RVPNSALWLLRFPAAGEMR R YA AQGVQPD
Sbjct: 766 EDKFIFACFNQLYKMDPEIVNTWCNILKRVPNSALWLLRFPAAGEMRFRTYAAAQGVQPD 825
Query: 660 QIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGS 719
QIIFTDVAMK EHIRRS LAD+ LDTPLCN HTTGTD+LWAG+PMITLPLEKMATRVAGS
Sbjct: 826 QIIFTDVAMKSEHIRRSVLADVILDTPLCNGHTTGTDVLWAGVPMITLPLEKMATRVAGS 885
Query: 720 LCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 779
LCLATGLG MIVNS++EYEE+AVSLAL++ KLQALT +L++ RLTCPLFDT RWVKNLE
Sbjct: 886 LCLATGLGHGMIVNSLEEYEEKAVSLALNKPKLQALTKELRASRLTCPLFDTMRWVKNLE 945
Query: 780 RSYFKMWSLHCSGQKPQHFKVTENDLDFPCDR 811
RSYFKMW+LHCSGQ+PQHFKV ENDL+FP DR
Sbjct: 946 RSYFKMWNLHCSGQQPQHFKVLENDLEFPHDR 977
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O-linked N-acetylglucosamine transferase (OGT) that mediates O-glycosylation of capsid protein (CP) of virus in case of infection by Plum pox virus. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Its OGT activity has been proved in vitro but not in vivo. Required with SPY for gamete and seed development. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: - |
| >sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 531 bits (1367), Expect = e-149, Method: Compositional matrix adjust.
Identities = 271/576 (47%), Positives = 367/576 (63%), Gaps = 6/576 (1%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G + A Q AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSN
Sbjct: 137 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 196
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
L +F G++ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ P
Sbjct: 197 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 256
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
N A+ GNLA YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CY
Sbjct: 257 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 316
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
N L L P+H +L NL NI E + A Y+ L V +A +NLA + +QQG
Sbjct: 317 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 376
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+A+ Y E +RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLA
Sbjct: 377 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 436
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQ 362
S +KDSG++ AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q
Sbjct: 437 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 496
Query: 363 VNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGG 422
+ + LPSV P H++ YP+ I+ ++ + C + PP+ HP + + DG
Sbjct: 497 LEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLS-DG- 554
Query: 423 LRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHF 482
RLRVGYVSSDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF
Sbjct: 555 --RLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHF 612
Query: 483 VDVSAMSSD-MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGAS 541
+D+S + + A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA
Sbjct: 613 IDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGAL 672
Query: 542 YIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDY 577
++DY++TD+ SP A YSEKL ++PH +F+ D+
Sbjct: 673 FMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDH 708
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Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Rattus norvegicus GN=Ogt PE=1 SV=1 | Back alignment and function description |
|---|
Score = 530 bits (1366), Expect = e-149, Method: Compositional matrix adjust.
Identities = 271/576 (47%), Positives = 367/576 (63%), Gaps = 6/576 (1%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G + A Q AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSN
Sbjct: 127 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 186
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
L +F G++ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ P
Sbjct: 187 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 246
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
N A+ GNLA YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CY
Sbjct: 247 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 306
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
N L L P+H +L NL NI E + A Y+ L V +A +NLA + +QQG
Sbjct: 307 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 366
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+A+ Y E +RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLA
Sbjct: 367 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 426
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQ 362
S +KDSG++ AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q
Sbjct: 427 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAEQ 486
Query: 363 VNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGG 422
+ + LPSV P H++ YP+ I+ ++ + C + PP+ HP + + DG
Sbjct: 487 LEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLS-DG- 544
Query: 423 LRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHF 482
RLRVGYVSSDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF
Sbjct: 545 --RLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHF 602
Query: 483 VDVSAMSSD-MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGAS 541
+D+S + + A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA
Sbjct: 603 IDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGAL 662
Query: 542 YIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDY 577
++DY++TD+ SP A YSEKL ++PH +F+ D+
Sbjct: 663 FMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDH 698
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|Q8CGY8|OGT1_MOUSE UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Mus musculus GN=Ogt PE=1 SV=2 | Back alignment and function description |
|---|
Score = 530 bits (1366), Expect = e-149, Method: Compositional matrix adjust.
Identities = 271/576 (47%), Positives = 367/576 (63%), Gaps = 6/576 (1%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G + A Q AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSN
Sbjct: 137 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 196
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
L +F G++ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ P
Sbjct: 197 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 256
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
N A+ GNLA YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CY
Sbjct: 257 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 316
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
N L L P+H +L NL NI E + A Y+ L V +A +NLA + +QQG
Sbjct: 317 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 376
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+A+ Y E +RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLA
Sbjct: 377 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 436
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQ 362
S +KDSG++ AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q
Sbjct: 437 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAEQ 496
Query: 363 VNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGG 422
+ + LPSV P H++ YP+ I+ ++ + C + PP+ HP + + DG
Sbjct: 497 LEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLS-DG- 554
Query: 423 LRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHF 482
RLRVGYVSSDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF
Sbjct: 555 --RLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHF 612
Query: 483 VDVSAMSSD-MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGAS 541
+D+S + + A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA
Sbjct: 613 IDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGAL 672
Query: 542 YIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDY 577
++DY++TD+ SP A YSEKL ++PH +F+ D+
Sbjct: 673 FMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDH 708
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1 SV=2 | Back alignment and function description |
|---|
Score = 530 bits (1366), Expect = e-149, Method: Compositional matrix adjust.
Identities = 271/576 (47%), Positives = 367/576 (63%), Gaps = 6/576 (1%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G + A Q AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSN
Sbjct: 137 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 196
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
L +F G++ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ P
Sbjct: 197 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 256
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
N A+ GNLA YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CY
Sbjct: 257 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 316
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
N L L P+H +L NL NI E + A Y+ L V +A +NLA + +QQG
Sbjct: 317 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 376
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+A+ Y E +RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLA
Sbjct: 377 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 436
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQ 362
S +KDSG++ AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q
Sbjct: 437 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 496
Query: 363 VNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGG 422
+ + LPSV P H++ YP+ I+ ++ + C + PP+ HP + + DG
Sbjct: 497 LEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLS-DG- 554
Query: 423 LRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHF 482
RLRVGYVSSDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF
Sbjct: 555 --RLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHF 612
Query: 483 VDVSAMSSD-MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGAS 541
+D+S + + A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA
Sbjct: 613 IDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGAL 672
Query: 542 YIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDY 577
++DY++TD+ SP A YSEKL ++PH +F+ D+
Sbjct: 673 FMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDH 708
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Oryctolagus cuniculus (taxid: 9986) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3 | Back alignment and function description |
|---|
Score = 530 bits (1366), Expect = e-149, Method: Compositional matrix adjust.
Identities = 271/576 (47%), Positives = 367/576 (63%), Gaps = 6/576 (1%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G + A Q AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSN
Sbjct: 137 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 196
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
L +F G++ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ P
Sbjct: 197 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 256
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
N A+ GNLA YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CY
Sbjct: 257 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 316
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
N L L P+H +L NL NI E + A Y+ L V +A +NLA + +QQG
Sbjct: 317 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 376
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+A+ Y E +RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLA
Sbjct: 377 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 436
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQ 362
S +KDSG++ AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q
Sbjct: 437 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 496
Query: 363 VNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGG 422
+ + LPSV P H++ YP+ I+ ++ + C + PP+ HP + + DG
Sbjct: 497 LEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLS-DG- 554
Query: 423 LRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHF 482
RLRVGYVSSDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF
Sbjct: 555 --RLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHF 612
Query: 483 VDVSAMSSD-MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGAS 541
+D+S + + A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA
Sbjct: 613 IDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGAL 672
Query: 542 YIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDY 577
++DY++TD+ SP A YSEKL ++PH +F+ D+
Sbjct: 673 FMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDH 708
|
Isoform 2, the mitochondrial isoform (mOGT), is cytotoxic and triggers apoptosis in several cell types including INS1, an insulinoma cell line. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|O18158|OGT1_CAEEL UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase OS=Caenorhabditis elegans GN=ogt-1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 517 bits (1331), Expect = e-145, Method: Compositional matrix adjust.
Identities = 271/580 (46%), Positives = 368/580 (63%), Gaps = 7/580 (1%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G L +A AL +NP L S+LGNL+KA G ++EA CYL+A+ QP FA+AWSN
Sbjct: 241 GDLEQAVTAYFNALQINPDLYCVRSDLGNLLKAMGRLEEAKVCYLKAIETQPQFAVAWSN 300
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
L +F G++ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+
Sbjct: 301 LGCVFNSQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVSAYLRALNLSG 360
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
N A+ GNLA YYE+G D+AI YK+AI P F +AY NL NALK+ G V EA Q Y
Sbjct: 361 NHAVVHGNLACVYYEQGLIDLAIDTYKKAIDLQPHFPDAYCNLANALKEKGSVVEAEQMY 420
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
+ L L P+H + NL NI E + A Y L + +A +NLA I +QQG
Sbjct: 421 MKALELCPTHADSQNNLANIKREQGKIEDATRLYLKALEIYPEFAAAHSNLASILQQQGK 480
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
DAI Y E +RI P AD N GNT KE+G + AI Y RAI I P A+AH+NLA
Sbjct: 481 LNDAILHYKEAIRIAPTFADAYSNMGNTLKEMGDSSAAIACYNRAIQINPAFADAHSNLA 540
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQ 362
S +KD+G++ AI+SY AL L+PDFP+A CNL H Q +C W D D+ ++ I+ Q
Sbjct: 541 SIHKDAGNMAEAIQSYSTALKLKPDFPDAYCNLAHCHQIICDWNDYDKRVRKLVQIVEDQ 600
Query: 363 VNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHC--SIIASRFALPPFNHPVPIPIRLD 420
+ LPSV P H++ YP+ + I+ K+AS C + P H ++ +
Sbjct: 601 LCKKRLPSVHPHHSMLYPLSHAARIAIAAKHASLCFDKVHVQMLGKTPLIHADRFSVQ-N 659
Query: 421 GGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAE 480
G +RLR+GYVSSDFGNHP SHLM S+ GMH++ VEVFCYALS NDGT +R + +E+E
Sbjct: 660 G--QRLRIGYVSSDFGNHPTSHLMQSIPGMHDRSRVEVFCYALSVNDGTNFRSKLMNESE 717
Query: 481 HFVDVSAMSSD-MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG 539
HFVD+S + + A+ I +D I ILIN+NGYTKGARNEIFA++PAPIQV ++G+P T+G
Sbjct: 718 HFVDLSQIPCNGKAAEKIAQDGIHILINMNGYTKGARNEIFALRPAPIQVMWLGYPSTSG 777
Query: 540 ASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQ 579
A+++DY++TD SPLR A+ ++EKL ++PH +F+ D+ Q
Sbjct: 778 ATFMDYIITDAVTSPLRLANAFTEKLAYMPHTFFIGDHAQ 817
|
Addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Caenorhabditis elegans (taxid: 6239) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Petunia hybrida GN=SPY PE=2 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (764), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 225/814 (27%), Positives = 363/814 (44%), Gaps = 78/814 (9%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF------ 57
GRL A + +A+ L+P A ++ G L K +G + EA Y +AL+ P++
Sbjct: 98 GRL--AFESFAEAIKLDPQNACALTHCGILYKDEGRLVEAAESYQKALKADPSYKPAAEC 155
Query: 58 -AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQ 116
AI +++ +G+ +Q Y EA+K+ + AY NLG VY + A+ CY+
Sbjct: 156 LAIVLTDIGTSLKLAGNSQEGIQKYYEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYE 215
Query: 117 RAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR- 174
+A RP A A+ N+ Y RG + AI Y++ + P F A NN+ AL D+G
Sbjct: 216 KAAIERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
Query: 175 ------VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA 228
+++ + Y + L + A+ NLG Y E A +Y+ +
Sbjct: 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
Query: 229 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAI 288
NNL VIYK + N A+ CY L I P + L N G Y G++ A +AI
Sbjct: 336 ACNNLGVIYKDRDNLDKAVECYQMALTIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAI 395
Query: 289 TIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDR 348
PT AEA+ NL Y+D+G++ AI++Y+Q L + PD A N L + + D
Sbjct: 396 IANPTYAEAYNNLGVLYRDAGNISLAIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGSD- 454
Query: 349 DRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPP 408
D+++ R + Q +++ DP
Sbjct: 455 DKLYEA-----HRDWGWRFMRLYQQYNSWDNSKDPE------------------------ 485
Query: 409 FNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCY-ALSPND 467
R+L +GYVS D+ H +S+ + + H+ N +V Y A+ D
Sbjct: 486 ---------------RQLVIGYVSPDYFTHSVSYFIEAPLAYHDYANYKVVIYSAVVKAD 530
Query: 468 G--TEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPA 525
+R + + + D+ + ++ +I EDK+ I+I L G+T + + A +PA
Sbjct: 531 AKTNRFRDKVLKKGGVWRDIYGIDEKKVSSMIREDKVDIMIELTGHTANNKLGMMACRPA 590
Query: 526 PIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVL 585
P+QV+++G+P TTG IDY +TD P + E+LV +P +
Sbjct: 591 PVQVTWIGYPNTTGLPTIDYRITDSMADPPSTKQKHVEELVRLPDSFLCY--------TP 642
Query: 586 DPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFP-AAGE 644
P P L F FN L K+ P++ W IL VP+S L + P
Sbjct: 643 SPEAGPVSPAPALTNGFVTFGSFNNLAKITPKVLQVWARILCAVPHSRLIVKCKPFGCDS 702
Query: 645 MRLRAYAVAQ--GVQPDQIIFTD-VAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAG 701
+R R ++ + G++P ++ + + +H++ SL D+ LDT TT + L+ G
Sbjct: 703 VRQRFLSILEQLGLEPQRVDLVPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMG 762
Query: 702 LPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKS 761
+P +T+ A V SL GL +++ + EY E A+ LA D L L L+
Sbjct: 763 VPCVTMGGSVHAHNVGVSLLKTVGL-RKLVARNEDEYVELAIQLASDVTSLSNLRMSLRE 821
Query: 762 VRLTCPLFDTARWVKNLERSYFKMWSLHCSGQKP 795
+ PL D A++ +NLE +Y MW +C G P
Sbjct: 822 LMAKSPLCDGAQFTQNLESTYRSMWRRYCDGDVP 855
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Petunia hybrida (taxid: 4102) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q8RVB2|SPY_SOLLC Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Solanum lycopersicum GN=SPY PE=2 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (745), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 225/815 (27%), Positives = 365/815 (44%), Gaps = 78/815 (9%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF------ 57
GRL A + +A+ ++P A ++ G L K +G + EA Y +AL+ P++
Sbjct: 98 GRL--AFESFSEAIKVDPQNACALTHCGILYKDEGRLVEAAESYEKALKADPSYTPAAEC 155
Query: 58 -AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQ 116
AI +++ +G+ +Q Y EA+K+ + AY NLG VY + A+ CY+
Sbjct: 156 LAIVLTDIGTSLKLAGNTQEGIQKYYEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYE 215
Query: 117 RAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR- 174
+A RP A A+ N+ + RG + AI Y++ + P F A NN+ AL D+G
Sbjct: 216 KAALERPMYAEAYCNMGVIFKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
Query: 175 ------VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA 228
+++ + Y + L + A+ NLG Y E A +Y+ +
Sbjct: 276 VKLEGDINQGVAYYKKALCYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
Query: 229 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAI 288
NNL VIYK + N A+ CY L I P + L N G Y G++ A +AI
Sbjct: 336 ACNNLGVIYKDRDNLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAI 395
Query: 289 TIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDR 348
PT AEA+ NL Y+D+G++ AI++Y+Q L + PD A N L + + D
Sbjct: 396 IANPTYAEAYNNLGVLYRDAGNISLAIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGTD- 454
Query: 349 DRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPP 408
D+++ RR + + YP +Y S
Sbjct: 455 DKLYEAHRDWGRRFMKL-------------YP-----------QYTSW------------ 478
Query: 409 FNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYAL---SP 465
N VP R L +GYVS D+ H +S+ + + H+ N +V Y+ +
Sbjct: 479 DNSKVP--------ERPLVIGYVSPDYFTHSVSYFIEAPLAHHDYTNYKVVVYSSVVKAD 530
Query: 466 NDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPA 525
+R + + + D+ + ++ +I EDK+ I++ L G+T + A +PA
Sbjct: 531 AKTNRFRDKVMKKGGLWRDIYGIDEKKVSSMIREDKVDIMVELTGHTANNKLGTMACRPA 590
Query: 526 PIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVL 585
P+QV+++G+P TTG IDY +TD P + E+LV +P+ +
Sbjct: 591 PVQVTWIGYPNTTGLPTIDYRITDAMADPPNAKQKHVEELVRLPNSFLCY--------TP 642
Query: 586 DPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFP-AAGE 644
P P L F FN L K+ P++ W IL VP+S L + P
Sbjct: 643 SPEAGPVCPAPALSNGFVTFGSFNNLAKITPKVLKVWARILSAVPHSRLIVKCKPFCCDS 702
Query: 645 MRLRAYAVAQ--GVQPDQI-IFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAG 701
+R R ++ + G++P ++ + + + +H++ SL D+ LDT TT + L+ G
Sbjct: 703 VRQRFLSILEQLGLEPQRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMG 762
Query: 702 LPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKS 761
+P +T+ A V SL GL E ++ + EY E A+ LA D L L L+
Sbjct: 763 VPCVTMGGSVHAHNVGVSLLKTVGL-ENLVARNEDEYVESAIQLASDVTSLSNLRMSLRE 821
Query: 762 VRLTCPLFDTARWVKNLERSYFKMWSLHCSGQKPQ 796
+ PL D A++ +N+E Y MW +C G P
Sbjct: 822 LMSKSPLCDGAKFTRNIESIYRSMWRRYCDGDVPS 856
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Solanum lycopersicum (taxid: 4081) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q6YZI0|SPY_ORYSJ Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Oryza sativa subsp. japonica GN=SPY PE=3 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (719), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 218/810 (26%), Positives = 358/810 (44%), Gaps = 76/810 (9%)
Query: 8 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF-------AIA 60
+A +C +A+ ++P A + G + K +G + EA Y +A P++ AI
Sbjct: 86 QAIECFNEAVRIDPGNACALTYCGMIYKDEGHLVEAAEAYQKARNADPSYKPAAEFLAIV 145
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
++L +G+ +Q Y EA+++ + AY NLG VY + A+ CY++A
Sbjct: 146 LTDLGTSLKLAGNTEEGIQKYCEALEVDSHYAPAYYNLGVVYSEMMQFDLALTCYEKAAL 205
Query: 121 TRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR----- 174
RP A A+ N+ Y RG+ + AI Y++ + P F A NN+ AL D+G
Sbjct: 206 ERPLYAEAYCNMGVIYKNRGELEAAIACYERCLTISPNFEIAKNNMAIALTDLGTKVKIE 265
Query: 175 --VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNN 232
+++ + Y + L + A+ NLG Y E A +Y+ L + NN
Sbjct: 266 GDINQGVAYYKKALFYNWHYADAMYNLGVAYGEMLNFEMAIVFYELALHFNPRCAEACNN 325
Query: 233 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 292
L VIYK + N A+ CY L I P + L N G Y G++ A +AI
Sbjct: 326 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAASSMIQKAIFANS 385
Query: 293 TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMF 352
T AEA+ NL Y+D+G + +A+++Y++ L + PD A N L L + D D+++
Sbjct: 386 TYAEAYNNLGVLYRDAGSITSAVQAYEKCLQIDPDSRNAGQNRLLALNYIDEGFD-DKLY 444
Query: 353 SEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHP 412
+R + + YP +Y S +++P
Sbjct: 445 QAHREWGKRFLKL-------------YP-----------QYTS-------------WDNP 467
Query: 413 VPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYA---LSPNDGT 469
R L +GYVS D+ H +S+ + + H+ N +V Y+ +
Sbjct: 468 KVAD-------RPLVIGYVSPDYFTHSVSYFIEAPLAHHDYSNYKVVVYSGVVKADAKTL 520
Query: 470 EWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQV 529
++ + + + D+ + +A L+ EDK+ IL+ L G+T + A +PAPIQV
Sbjct: 521 RFKDKVLKKGGLWRDIYGIDEKKVASLVREDKVDILVELTGHTANNKLGTMACRPAPIQV 580
Query: 530 SYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNC 589
+++G+P TTG IDY +TD P + E+LV +P + Y P
Sbjct: 581 TWIGYPNTTGLPTIDYRITDSLADPPDTTQKHVEELVRLPESFLC--YSPS------PEA 632
Query: 590 QPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGE---MR 646
P + F FN L K+ P++ W IL VPNS L + P + +
Sbjct: 633 GPVCPTPAILNGFITFGSFNNLAKITPKVLQVWAKILCAVPNSRLVVKCKPFCCDSIRQK 692
Query: 647 LRAYAVAQGVQPDQI-IFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMI 705
+ G++P ++ + + + +H++ SL D+ LDT TT + L+ G+P +
Sbjct: 693 FLSTLAELGLEPLRVDLLPLIHLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCV 752
Query: 706 TLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLT 765
T+ A V SL GLG ++ S EY A+ LA D LQ L L+ +
Sbjct: 753 TMAGSVHAHNVGVSLLTKVGLG-RLVAKSENEYVSLALDLAADVTALQELRMSLRGLMAK 811
Query: 766 CPLFDTARWVKNLERSYFKMWSLHCSGQKP 795
P+ D + + LE +Y MW +C G P
Sbjct: 812 SPVCDGENFTRGLESAYRNMWRRYCDGDAP 841
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 811 | ||||||
| 357441255 | 986 | O-linked GlcNAc transferase like protein | 1.0 | 0.822 | 0.896 | 0.0 | |
| 356535232 | 988 | PREDICTED: probable UDP-N-acetylglucosam | 1.0 | 0.820 | 0.897 | 0.0 | |
| 255562045 | 979 | o-linked n-acetylglucosamine transferase | 1.0 | 0.828 | 0.916 | 0.0 | |
| 224144666 | 873 | predicted protein [Populus trichocarpa] | 1.0 | 0.928 | 0.896 | 0.0 | |
| 224123642 | 923 | predicted protein [Populus trichocarpa] | 0.996 | 0.875 | 0.897 | 0.0 | |
| 225430656 | 986 | PREDICTED: probable UDP-N-acetylglucosam | 1.0 | 0.822 | 0.890 | 0.0 | |
| 449449593 | 975 | PREDICTED: probable UDP-N-acetylglucosam | 0.987 | 0.821 | 0.880 | 0.0 | |
| 15229253 | 977 | putative UDP-N-acetylglucosamine--peptid | 1.0 | 0.830 | 0.862 | 0.0 | |
| 297833104 | 977 | hypothetical protein ARALYDRAFT_896453 [ | 1.0 | 0.830 | 0.863 | 0.0 | |
| 357441257 | 744 | O-linked GlcNAc transferase like protein | 0.916 | 0.998 | 0.891 | 0.0 |
| >gi|357441255|ref|XP_003590905.1| O-linked GlcNAc transferase like protein [Medicago truncatula] gi|355479953|gb|AES61156.1| O-linked GlcNAc transferase like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1562 bits (4045), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 728/812 (89%), Positives = 784/812 (96%), Gaps = 1/812 (0%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
MRKGRL EAAQCCRQALA+NPL+VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA
Sbjct: 175 MRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 234
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
WSNLAGLFMESGD NRALQYYKEAVKLKP+FPDAYLNLGNVYKALGMPQEAI CYQ A+Q
Sbjct: 235 WSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQ 294
Query: 121 TRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 179
TRPN +A+GNLAS +YE+GQ DMAIL+YKQAI CDPRFLEAYNNLGNALKDVGRV+EAI
Sbjct: 295 TRPNYGMAYGNLASIHYEQGQLDMAILHYKQAIACDPRFLEAYNNLGNALKDVGRVEEAI 354
Query: 180 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 239
QCYNQCLSLQP+HPQALTNLGNIYMEWNM+ AAASYYKATL VTTGLSAP+NNLA+IYKQ
Sbjct: 355 QCYNQCLSLQPNHPQALTNLGNIYMEWNMVAAAASYYKATLNVTTGLSAPYNNLAIIYKQ 414
Query: 240 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 299
QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRV+DAIQDYIRAIT+RPTMAEAHA
Sbjct: 415 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAITVRPTMAEAHA 474
Query: 300 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGII 359
NLASAYKDSGHVEAA+KSY+QAL+LR DFPEATCNLLHTLQCVC WEDRD+MF EVEGII
Sbjct: 475 NLASAYKDSGHVEAAVKSYRQALILRTDFPEATCNLLHTLQCVCCWEDRDQMFKEVEGII 534
Query: 360 RRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRL 419
RRQ+NMSVLPSVQPFHAIAYP+DPMLALEISRKYA+HCS+IASRF+LPPF+HP PIPI+
Sbjct: 535 RRQINMSVLPSVQPFHAIAYPLDPMLALEISRKYAAHCSVIASRFSLPPFSHPAPIPIKQ 594
Query: 420 DGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEA 479
+GG RLR+GYVSSDFGNHPLSHLMGSVFGMHN++NVEVFCYALSPNDGTEWRQR QSEA
Sbjct: 595 EGGYERLRIGYVSSDFGNHPLSHLMGSVFGMHNRKNVEVFCYALSPNDGTEWRQRIQSEA 654
Query: 480 EHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG 539
EHFVDVSAM+SD IAKLINEDKIQILINLNGYTKGARNEIFAM+PAP+QVSYMGFPGTTG
Sbjct: 655 EHFVDVSAMTSDTIAKLINEDKIQILINLNGYTKGARNEIFAMKPAPVQVSYMGFPGTTG 714
Query: 540 ASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLP 599
A+YIDYLVTDEFVSPL+YAHIYSEK+VH+PHCYFVNDYKQKN DVLDPNCQPKRSDYGLP
Sbjct: 715 ATYIDYLVTDEFVSPLQYAHIYSEKIVHLPHCYFVNDYKQKNQDVLDPNCQPKRSDYGLP 774
Query: 600 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPD 659
EDKF+FACFNQLYKMDPEIFNTWCNIL+RVPNSALWLL+FPAAGEMRLRAYA AQGVQPD
Sbjct: 775 EDKFLFACFNQLYKMDPEIFNTWCNILKRVPNSALWLLKFPAAGEMRLRAYAAAQGVQPD 834
Query: 660 QIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGS 719
QIIFTDVAMK EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPM+TLPLEKMATRVAGS
Sbjct: 835 QIIFTDVAMKGEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMVTLPLEKMATRVAGS 894
Query: 720 LCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 779
LC++TGLGEEMIV+SMKEYE+RAVSLAL+R KLQALT+KLKSVRLTCPLFDT RWV+NL+
Sbjct: 895 LCISTGLGEEMIVSSMKEYEDRAVSLALNRPKLQALTDKLKSVRLTCPLFDTNRWVRNLD 954
Query: 780 RSYFKMWSLHCSGQKPQHFKVTENDLDFPCDR 811
R+YFKMW+LHC+GQ+PQHFKVTEND + P D+
Sbjct: 955 RAYFKMWNLHCTGQRPQHFKVTENDNECPYDK 986
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535232|ref|XP_003536152.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1558 bits (4035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 729/812 (89%), Positives = 777/812 (95%), Gaps = 1/812 (0%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
MRKGRL EAAQCCRQALA+NPL+VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA
Sbjct: 177 MRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 236
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
WSNLAGLFMESGD NRALQYYKEAVKLKP+FPDAYLNLGNVYKALGMPQEAI CYQ A+Q
Sbjct: 237 WSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQ 296
Query: 121 TRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 179
TRPN +A+GNLAS YYE+GQ DMAIL+YKQA+ CDPRFLEAYNNLGNALKDVGRV+EAI
Sbjct: 297 TRPNYGMAYGNLASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAI 356
Query: 180 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 239
QCYNQCL+LQP+HPQALTNLGNIYMEWNM+ AAA YYKATL VTTGLSAP+NNLA+IYKQ
Sbjct: 357 QCYNQCLTLQPNHPQALTNLGNIYMEWNMVAAAAQYYKATLNVTTGLSAPYNNLAIIYKQ 416
Query: 240 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 299
QGNY DAISCYNEVLRIDPLAADGLVNRGNTYKEIGRV+DAIQDYIRAI +RPTMAEAHA
Sbjct: 417 QGNYVDAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRPTMAEAHA 476
Query: 300 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGII 359
NLASAYKDSGHVEAA+KSYKQAL+LRPDFPEATCNLLHTLQCVC WEDRD+MF EVE II
Sbjct: 477 NLASAYKDSGHVEAAVKSYKQALILRPDFPEATCNLLHTLQCVCCWEDRDKMFKEVESII 536
Query: 360 RRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRL 419
RRQ+NMSVLPSVQPFHAIAYP+DPMLALEISRKYA+HCS+IASRFALPPFNHP PIPI+
Sbjct: 537 RRQINMSVLPSVQPFHAIAYPLDPMLALEISRKYAAHCSVIASRFALPPFNHPSPIPIKR 596
Query: 420 DGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEA 479
+GG RLR+GYVSSDFGNHPLSHLMGSVFGMHN++NVEVFCYALS NDGTEWRQR QSEA
Sbjct: 597 EGGYERLRIGYVSSDFGNHPLSHLMGSVFGMHNRKNVEVFCYALSANDGTEWRQRIQSEA 656
Query: 480 EHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG 539
EHFVDVSAMSSD IAK+INEDKI IL+NLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG
Sbjct: 657 EHFVDVSAMSSDAIAKMINEDKIHILVNLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG 716
Query: 540 ASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLP 599
A+YIDYLVTDEFVSPL YA+IYSEK+VH+PHCYFVNDYKQKN DVLDPNC KRSDYGLP
Sbjct: 717 ATYIDYLVTDEFVSPLGYANIYSEKIVHLPHCYFVNDYKQKNQDVLDPNCPHKRSDYGLP 776
Query: 600 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPD 659
EDKFIFACFNQLYKMDPEIFNTWCNIL+RVPNSALWLLRFPAAGEMRLRAYA AQGVQPD
Sbjct: 777 EDKFIFACFNQLYKMDPEIFNTWCNILKRVPNSALWLLRFPAAGEMRLRAYAAAQGVQPD 836
Query: 660 QIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGS 719
QIIFTDVA K EHIRRSSLADLFLD+PLCNAHTTGTDILWAGLPM+TLPLEKMATRVAGS
Sbjct: 837 QIIFTDVATKNEHIRRSSLADLFLDSPLCNAHTTGTDILWAGLPMVTLPLEKMATRVAGS 896
Query: 720 LCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 779
LCLATGLG+EMIV+SMKEYE+RAVSLAL+R KL+ALTNKLK+VRLTCPLFDTARWV+NLE
Sbjct: 897 LCLATGLGDEMIVSSMKEYEDRAVSLALNRPKLKALTNKLKAVRLTCPLFDTARWVRNLE 956
Query: 780 RSYFKMWSLHCSGQKPQHFKVTENDLDFPCDR 811
RSYFKMW+LHCSGQ+PQHFKVTENDL+ P DR
Sbjct: 957 RSYFKMWNLHCSGQRPQHFKVTENDLECPYDR 988
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562045|ref|XP_002522031.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] gi|223538835|gb|EEF40435.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1555 bits (4027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 744/812 (91%), Positives = 787/812 (96%), Gaps = 1/812 (0%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA
Sbjct: 168 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 227
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
WSNLAGLF+ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVY+ALGMPQEAI+CYQRAVQ
Sbjct: 228 WSNLAGLFLESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYRALGMPQEAIVCYQRAVQ 287
Query: 121 TRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 179
TRPN A+AFGNLASTYYERGQ D+AI +YKQAI CD RFLEAYNNLGNALKDVGRV+EAI
Sbjct: 288 TRPNYAVAFGNLASTYYERGQLDLAIHHYKQAIACDGRFLEAYNNLGNALKDVGRVEEAI 347
Query: 180 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 239
QCYNQCL+LQPSHPQALTNLGNIYMEWNM AASYYKATLAVTTGLSAPFNNLAVIYKQ
Sbjct: 348 QCYNQCLALQPSHPQALTNLGNIYMEWNMASTAASYYKATLAVTTGLSAPFNNLAVIYKQ 407
Query: 240 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 299
QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRV+DAIQDYIRAITIRPTMAEAHA
Sbjct: 408 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAITIRPTMAEAHA 467
Query: 300 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGII 359
NLASAYKDSG VEAA+KSY+QAL+LRPDFPEATCNLLHTLQCVC WEDRD+MFSEVEGII
Sbjct: 468 NLASAYKDSGRVEAAVKSYRQALVLRPDFPEATCNLLHTLQCVCCWEDRDKMFSEVEGII 527
Query: 360 RRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRL 419
RRQ+ MSVLPSVQPFHAIAYPIDPMLAL+ISRKYA+HCSIIASRF LPPFNHP PIPIR
Sbjct: 528 RRQITMSVLPSVQPFHAIAYPIDPMLALDISRKYAAHCSIIASRFGLPPFNHPPPIPIRR 587
Query: 420 DGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEA 479
D G RLR+GYVSSDFGNHPLSHLMGSVFGMHN+ENVEVFCYALSPNDGTEWRQR QSEA
Sbjct: 588 DRGSERLRIGYVSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSPNDGTEWRQRIQSEA 647
Query: 480 EHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG 539
EHFV+VSAMS+DMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG
Sbjct: 648 EHFVEVSAMSADMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG 707
Query: 540 ASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLP 599
A+YIDYLVTDEFVSP RY+HIYSEKLVH+PHCYFVNDYKQKN+DVLDP CQ KRSDYGLP
Sbjct: 708 ATYIDYLVTDEFVSPTRYSHIYSEKLVHMPHCYFVNDYKQKNLDVLDPTCQHKRSDYGLP 767
Query: 600 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPD 659
EDKFIFACFNQLYKMDPEIFNTWCNIL+RVPNSALWLLRFPAAGEMRLR+YAV+QGVQP+
Sbjct: 768 EDKFIFACFNQLYKMDPEIFNTWCNILKRVPNSALWLLRFPAAGEMRLRSYAVSQGVQPE 827
Query: 660 QIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGS 719
QIIFTDVAMKQEHIRRS+LADLFLDTPLCNAHTTGTDILWAGLPM+TLPLEKMATRVAGS
Sbjct: 828 QIIFTDVAMKQEHIRRSALADLFLDTPLCNAHTTGTDILWAGLPMVTLPLEKMATRVAGS 887
Query: 720 LCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 779
LCLATGLG+EMIV+SMKEYEE+AVSLAL+R KLQALTNKLK+VR+TCPLFDT RWV+NLE
Sbjct: 888 LCLATGLGDEMIVSSMKEYEEKAVSLALNRPKLQALTNKLKAVRMTCPLFDTPRWVQNLE 947
Query: 780 RSYFKMWSLHCSGQKPQHFKVTENDLDFPCDR 811
R+YFKMW++HCSGQ+PQHFKVTE+D +FP DR
Sbjct: 948 RAYFKMWNIHCSGQQPQHFKVTEDDSEFPYDR 979
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224144666|ref|XP_002325368.1| predicted protein [Populus trichocarpa] gi|222862243|gb|EEE99749.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1549 bits (4011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 728/812 (89%), Positives = 777/812 (95%), Gaps = 1/812 (0%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
MRKGRLNEA+QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP+FAIA
Sbjct: 62 MRKGRLNEASQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPSFAIA 121
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
WSNLAGLFMESGDLNRALQYYKEAVKLKP FPDAYLNLGNVYKALGMPQEAIMCYQRAVQ
Sbjct: 122 WSNLAGLFMESGDLNRALQYYKEAVKLKPKFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 181
Query: 121 TRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 179
TRPN A+AFGNLAST YERGQ ++AIL+YKQAI CD RFLEAYNNLGNALKDVGRVDEA+
Sbjct: 182 TRPNYAMAFGNLASTCYERGQVELAILHYKQAIACDQRFLEAYNNLGNALKDVGRVDEAL 241
Query: 180 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 239
QCYNQCLS+QP+HPQALTNLGNIYMEWNM AAAS YKATLAVTTGLSAPFNNLAVIYKQ
Sbjct: 242 QCYNQCLSIQPNHPQALTNLGNIYMEWNMSAAAASCYKATLAVTTGLSAPFNNLAVIYKQ 301
Query: 240 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 299
QGNY+DAISCYNEVLRI+P+AADGLVNRGNTYKEIGRV++AIQDYI AI IRPTMAEAHA
Sbjct: 302 QGNYSDAISCYNEVLRIEPMAADGLVNRGNTYKEIGRVSEAIQDYIHAINIRPTMAEAHA 361
Query: 300 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGII 359
NLASAYKDSGHVEAAIKSY+QALLLRPDFPEATCNLLHTLQCVC WEDRD+MF EVEGII
Sbjct: 362 NLASAYKDSGHVEAAIKSYRQALLLRPDFPEATCNLLHTLQCVCCWEDRDKMFDEVEGII 421
Query: 360 RRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRL 419
RRQ++MSVLPSVQPFHAIAYPIDP+LALEIS KYA+HCSIIASRFAL PF HP P+P++
Sbjct: 422 RRQISMSVLPSVQPFHAIAYPIDPVLALEISHKYAAHCSIIASRFALSPFKHPAPLPVKH 481
Query: 420 DGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEA 479
+ G RLR+GYVSSDFGNHPLSHLMGSVFGMHN+ENVEVFCYALSPNDGTEWRQRTQ EA
Sbjct: 482 ERGSGRLRIGYVSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSPNDGTEWRQRTQFEA 541
Query: 480 EHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG 539
EHF+DVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG
Sbjct: 542 EHFIDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG 601
Query: 540 ASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLP 599
A+YIDYLVTDEFVSP R++HIYSEKLVH+PHCYFVNDYKQKN+DVLDP CQ KR DYGLP
Sbjct: 602 ATYIDYLVTDEFVSPTRFSHIYSEKLVHLPHCYFVNDYKQKNLDVLDPTCQHKRLDYGLP 661
Query: 600 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPD 659
EDKFIFACFNQLYKMDPEIFNTWCNIL+RVPNSALWLLRFPAAGEMRLRAYAVAQGV PD
Sbjct: 662 EDKFIFACFNQLYKMDPEIFNTWCNILKRVPNSALWLLRFPAAGEMRLRAYAVAQGVNPD 721
Query: 660 QIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGS 719
QIIFTDVAMKQEHIRRS+LADLFLDTPLCNAHTTGTDILWAGLPM+T+PLEKMATRVAGS
Sbjct: 722 QIIFTDVAMKQEHIRRSALADLFLDTPLCNAHTTGTDILWAGLPMVTMPLEKMATRVAGS 781
Query: 720 LCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 779
LCLATGLG+EMIV+SMKEYEERAVSLAL++ KLQ+LTN+LK+ R+TCPLFDT RWV+NLE
Sbjct: 782 LCLATGLGDEMIVSSMKEYEERAVSLALNKPKLQSLTNRLKAFRMTCPLFDTKRWVRNLE 841
Query: 780 RSYFKMWSLHCSGQKPQHFKVTENDLDFPCDR 811
R+YFKMW++HCSGQ+P HFKV END D P DR
Sbjct: 842 RAYFKMWNIHCSGQQPHHFKVAENDFDCPYDR 873
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123642|ref|XP_002319130.1| predicted protein [Populus trichocarpa] gi|222857506|gb|EEE95053.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1547 bits (4005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 726/809 (89%), Positives = 776/809 (95%), Gaps = 1/809 (0%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
MRKGRLNEA+QCCRQAL LNP LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA
Sbjct: 115 MRKGRLNEASQCCRQALTLNPHLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 174
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
WSNLAGLFMESGDLNRALQYYKEAVKLKP FPDAYLNLGNVYKALGMPQEAI+CYQ+AVQ
Sbjct: 175 WSNLAGLFMESGDLNRALQYYKEAVKLKPKFPDAYLNLGNVYKALGMPQEAIVCYQQAVQ 234
Query: 121 TRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 179
RP A+AFGNLASTYYERGQ D+AIL+YKQAI CD RFLEAYNNLGNALKDVGRVDEAI
Sbjct: 235 ARPKYAMAFGNLASTYYERGQLDLAILHYKQAIACDQRFLEAYNNLGNALKDVGRVDEAI 294
Query: 180 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 239
QCYNQCLSLQP+HPQALTNLGNIYMEWNM AAAS YKATLAVTTGLSAPF+NLAVIYKQ
Sbjct: 295 QCYNQCLSLQPNHPQALTNLGNIYMEWNMSAAAASCYKATLAVTTGLSAPFSNLAVIYKQ 354
Query: 240 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 299
QGNY+DAISCYNEVLRI+PLAADGLVNRGNTYKEIGRV++AIQDYI AITIRP MAEAHA
Sbjct: 355 QGNYSDAISCYNEVLRIEPLAADGLVNRGNTYKEIGRVSEAIQDYINAITIRPNMAEAHA 414
Query: 300 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGII 359
NLASAYKDSGHVEAAIKSY++ALLLR DFPEATCNLLHTLQCVC WEDRD+MF+EVEGII
Sbjct: 415 NLASAYKDSGHVEAAIKSYRKALLLRTDFPEATCNLLHTLQCVCCWEDRDKMFNEVEGII 474
Query: 360 RRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRL 419
RRQ++M+VLPSVQPFHAIAYPIDP+LALEISRKYA+HCSIIASRFALPPF HP P+ ++
Sbjct: 475 RRQISMAVLPSVQPFHAIAYPIDPVLALEISRKYAAHCSIIASRFALPPFKHPAPLAVKH 534
Query: 420 DGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEA 479
+ G RLR+GYVSSDFGNHPLSHLMGSVFGMHN+ENVEVFCYALSPNDGTEWRQRTQ EA
Sbjct: 535 ERGSGRLRIGYVSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSPNDGTEWRQRTQFEA 594
Query: 480 EHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG 539
EHF+DVSAM+SDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG
Sbjct: 595 EHFIDVSAMTSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG 654
Query: 540 ASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLP 599
A+YIDYLVTDEFVSP R++HIYSEKLVH+PHCYFVNDYKQKN+DVLDP CQ KRSDYGLP
Sbjct: 655 ATYIDYLVTDEFVSPTRFSHIYSEKLVHLPHCYFVNDYKQKNLDVLDPTCQHKRSDYGLP 714
Query: 600 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPD 659
EDKFIFACFNQLYKMDPEIFNTWCNIL+RVPNSALWLLRFPAAGEMRLRAYAVAQGVQPD
Sbjct: 715 EDKFIFACFNQLYKMDPEIFNTWCNILKRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPD 774
Query: 660 QIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGS 719
QIIFTDVAMKQEHIRRS+LADLFLDTPLCNAHTTGTDILWAGLPM+T+PLEKMATRVAGS
Sbjct: 775 QIIFTDVAMKQEHIRRSALADLFLDTPLCNAHTTGTDILWAGLPMVTMPLEKMATRVAGS 834
Query: 720 LCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 779
LCLATGLG+EMIV+SMKEYEERAVSLAL+R KLQ+LTN+LK+ R+TCPLFDT RWV+NL+
Sbjct: 835 LCLATGLGDEMIVSSMKEYEERAVSLALNRPKLQSLTNRLKAARMTCPLFDTRRWVRNLD 894
Query: 780 RSYFKMWSLHCSGQKPQHFKVTENDLDFP 808
R+YFKMWS+HCSGQ+P HFKV END DFP
Sbjct: 895 RAYFKMWSIHCSGQQPHHFKVAENDFDFP 923
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430656|ref|XP_002270163.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Vitis vinifera] gi|296085167|emb|CBI28662.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1537 bits (3979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 723/812 (89%), Positives = 784/812 (96%), Gaps = 1/812 (0%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
MRKGRLNEAAQCCRQALA+NPLLVDAHSNLGN MKAQGL+QEAYSCY+EALRIQP+FAIA
Sbjct: 175 MRKGRLNEAAQCCRQALAINPLLVDAHSNLGNFMKAQGLIQEAYSCYIEALRIQPSFAIA 234
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
WSNLAGLFMESGDL RALQYYKEAVKLKPTF DAYLNLGNVYKALGMPQEAI+CYQRA+Q
Sbjct: 235 WSNLAGLFMESGDLTRALQYYKEAVKLKPTFADAYLNLGNVYKALGMPQEAIVCYQRALQ 294
Query: 121 TRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 179
TRP A+A+GN+A TYYE+GQ DMAI++YKQAI CD FLEAYNNLGNALKDVGR+DEAI
Sbjct: 295 TRPEYAMAYGNMAGTYYEQGQMDMAIVHYKQAIECDSGFLEAYNNLGNALKDVGRIDEAI 354
Query: 180 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 239
QCY+QCL+LQP+HPQALTNLGNIYMEWNM+ AAA+YYKATLAVTTGLSAPF+NLA+IYKQ
Sbjct: 355 QCYHQCLALQPNHPQALTNLGNIYMEWNMVAAAATYYKATLAVTTGLSAPFSNLAIIYKQ 414
Query: 240 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 299
QGNYADAISCYNEVLRIDPLAADGLVNRGNT+KEIGRV++AIQDYI AITIRPTMAEAHA
Sbjct: 415 QGNYADAISCYNEVLRIDPLAADGLVNRGNTFKEIGRVSEAIQDYIHAITIRPTMAEAHA 474
Query: 300 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGII 359
NLASAYKDSGHVEAA+KSYKQAL+LRPDFPEATCNLLHTLQCVCSWEDR++MF EVEGII
Sbjct: 475 NLASAYKDSGHVEAAVKSYKQALVLRPDFPEATCNLLHTLQCVCSWEDREKMFIEVEGII 534
Query: 360 RRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRL 419
RRQ+ MSVLPSVQPFHAIAYPIDP+LAL+ISRKYA+HCS+IASR+ALP FNHP P+P++
Sbjct: 535 RRQIKMSVLPSVQPFHAIAYPIDPLLALDISRKYAAHCSLIASRYALPSFNHPNPVPVKS 594
Query: 420 DGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEA 479
+GG RLR+GY+SSDFGNHPLSHLMGSVFGMHN+ENVEVFCYALSPND TEWRQR QSEA
Sbjct: 595 EGGSGRLRIGYLSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSPNDSTEWRQRIQSEA 654
Query: 480 EHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG 539
EHF+DVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG
Sbjct: 655 EHFIDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG 714
Query: 540 ASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLP 599
ASYIDYLVTDEFVSPL YAHIYSEKLVH+PHCYFVNDYKQKN DVLDPNCQ KRSDYGLP
Sbjct: 715 ASYIDYLVTDEFVSPLCYAHIYSEKLVHLPHCYFVNDYKQKNRDVLDPNCQHKRSDYGLP 774
Query: 600 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPD 659
EDKFIFACFNQLYKMDPEIFNTWCNIL+RVPNSALWLLRFPAAGEMRLR+YAVAQG+QPD
Sbjct: 775 EDKFIFACFNQLYKMDPEIFNTWCNILKRVPNSALWLLRFPAAGEMRLRSYAVAQGLQPD 834
Query: 660 QIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGS 719
+IIFTDVAMK EHIRRS+LADLFLDTPLCNAHTTGTDILWAGLPM+TLPLEKMATRVAGS
Sbjct: 835 RIIFTDVAMKHEHIRRSALADLFLDTPLCNAHTTGTDILWAGLPMVTLPLEKMATRVAGS 894
Query: 720 LCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 779
LCLATGLGEEMIV+SMKEYEE+AVSLA++R KLQALTNKLK+VR++CPLFDTARWV+NLE
Sbjct: 895 LCLATGLGEEMIVSSMKEYEEKAVSLAMNRPKLQALTNKLKAVRMSCPLFDTARWVRNLE 954
Query: 780 RSYFKMWSLHCSGQKPQHFKVTENDLDFPCDR 811
R+YFKMW++HCSG +PQHFKV END+DFPCDR
Sbjct: 955 RAYFKMWNVHCSGSRPQHFKVAENDVDFPCDR 986
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449593|ref|XP_004142549.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1511 bits (3911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 715/812 (88%), Positives = 767/812 (94%), Gaps = 11/812 (1%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
MRKGRL EAAQCCRQALALNPLLVDAHSNLGNLMKAQG+VQEAYSCYLEALRIQPTFAIA
Sbjct: 174 MRKGRLGEAAQCCRQALALNPLLVDAHSNLGNLMKAQGMVQEAYSCYLEALRIQPTFAIA 233
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
WSNLAGLFMESGDLNRALQYYKEAVKLKP FPDAYLNLGNVYKALGMPQEAI+CYQRA+Q
Sbjct: 234 WSNLAGLFMESGDLNRALQYYKEAVKLKPQFPDAYLNLGNVYKALGMPQEAIVCYQRAIQ 293
Query: 121 TRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 179
RPN AIA+GNLASTYYE+ Q DMAIL+YKQAI CDPRFLEAYNNLGNALK+ GRV+EAI
Sbjct: 294 MRPNYAIAYGNLASTYYEQSQLDMAILHYKQAITCDPRFLEAYNNLGNALKEFGRVEEAI 353
Query: 180 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 239
QCYNQCL+LQPSHPQALTNLGNIYMEWNM+PAAASYYKATL VTTGLSAPFNNLA+IYKQ
Sbjct: 354 QCYNQCLALQPSHPQALTNLGNIYMEWNMVPAAASYYKATLRVTTGLSAPFNNLAIIYKQ 413
Query: 240 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 299
QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRV++AIQDYIRAI IRPTMAEAHA
Sbjct: 414 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSEAIQDYIRAINIRPTMAEAHA 473
Query: 300 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGII 359
NLASAYKDSG VEAAIKSYKQAL LRP+FPEATCNLLHTLQCVC+WEDRD+MF+EVEGII
Sbjct: 474 NLASAYKDSGLVEAAIKSYKQALHLRPEFPEATCNLLHTLQCVCNWEDRDKMFAEVEGII 533
Query: 360 RRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRL 419
+RQ+NMSVLPSVQPFHAIAYPIDP+LALEISR YASHC IASRF+LP FNHP P+ I+
Sbjct: 534 KRQINMSVLPSVQPFHAIAYPIDPLLALEISRSYASHCLKIASRFSLPSFNHPSPVAIKR 593
Query: 420 DGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEA 479
+GG RLR+GYVSSDFGNHPLSHLMGSVFGMHN+E+VEVFCYALSPND TEWRQR Q EA
Sbjct: 594 NGGFERLRIGYVSSDFGNHPLSHLMGSVFGMHNREHVEVFCYALSPNDNTEWRQRIQFEA 653
Query: 480 EHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG 539
EHFVDVS+M+SD+IAK+INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG
Sbjct: 654 EHFVDVSSMTSDVIAKMINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG 713
Query: 540 ASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLP 599
A+YIDYLVTDEFVSPLRYAHIYSEK+VH+PHCYFVNDYKQ ++ LP
Sbjct: 714 ATYIDYLVTDEFVSPLRYAHIYSEKIVHLPHCYFVNDYKQVICLLV----------LHLP 763
Query: 600 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPD 659
+ KFIFACFNQLYKMDPEIFNTWCNIL+RVPNSALWLLRFPAAGEMRLRAYAVAQGVQP+
Sbjct: 764 QGKFIFACFNQLYKMDPEIFNTWCNILKRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPE 823
Query: 660 QIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGS 719
QIIFTDVAMK EHIRRS+LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGS
Sbjct: 824 QIIFTDVAMKNEHIRRSALADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGS 883
Query: 720 LCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 779
LCLATGLG+EMIV+SMKEYEE+AV+LAL+R KLQALTNKLK+VR+TCPLFDTARWV+NLE
Sbjct: 884 LCLATGLGDEMIVSSMKEYEEKAVTLALNRPKLQALTNKLKAVRMTCPLFDTARWVRNLE 943
Query: 780 RSYFKMWSLHCSGQKPQHFKVTENDLDFPCDR 811
RSYFKMW+LHCSGQ PQHFKVTEN+L++P DR
Sbjct: 944 RSYFKMWNLHCSGQPPQHFKVTENNLEYPFDR 975
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15229253|ref|NP_187074.1| putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Arabidopsis thaliana] gi|75336082|sp|Q9M8Y0.1|SEC_ARATH RecName: Full=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC; AltName: Full=Protein SECRET AGENT gi|6721161|gb|AAF26789.1|AC016829_13 putative O-linked GlcNAc transferase [Arabidopsis thaliana] gi|18139887|gb|AAL60196.1|AF441079_1 O-linked N-acetyl glucosamine transferase [Arabidopsis thaliana] gi|20259324|gb|AAM13988.1| putative O-linked GlcNAc transferase [Arabidopsis thaliana] gi|21436429|gb|AAM51415.1| putative O-linked GlcNAc transferase [Arabidopsis thaliana] gi|110742062|dbj|BAE98963.1| O-linked GlcNAc transferase like protein [Arabidopsis thaliana] gi|332640535|gb|AEE74056.1| putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1503 bits (3892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 700/812 (86%), Positives = 759/812 (93%), Gaps = 1/812 (0%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
MRKGRL+EA QCC+QAL+LNPLLVDAHSNLGNLMKAQGL+ EAYSCYLEA+RIQPTFAIA
Sbjct: 166 MRKGRLSEATQCCQQALSLNPLLVDAHSNLGNLMKAQGLIHEAYSCYLEAVRIQPTFAIA 225
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
WSNLAGLFMESGDLNRALQYYKEAVKLKP FPDAYLNLGNVYKALG P EAIMCYQ A+Q
Sbjct: 226 WSNLAGLFMESGDLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQHALQ 285
Query: 121 TRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 179
RPN A+AFGN+AS YYE+GQ D+AI +YKQA+ DPRFLEAYNNLGNALKD+GRVDEA+
Sbjct: 286 MRPNSAMAFGNIASIYYEQGQLDLAIRHYKQALSRDPRFLEAYNNLGNALKDIGRVDEAV 345
Query: 180 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 239
+CYNQCL+LQP+HPQA+ NLGNIYMEWNM+ A+S +KATLAVTTGLSAPFNNLA+IYKQ
Sbjct: 346 RCYNQCLALQPNHPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQ 405
Query: 240 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 299
QGNY+DAISCYNEVLRIDPLAAD LVNRGNTYKEIGRVT+AIQDY+ AI RPTMAEAHA
Sbjct: 406 QGNYSDAISCYNEVLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAINFRPTMAEAHA 465
Query: 300 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGII 359
NLASAYKDSGHVEAAI SYKQALLLRPDFPEATCNLLHTLQCVC WEDR +MF+EVE II
Sbjct: 466 NLASAYKDSGHVEAAITSYKQALLLRPDFPEATCNLLHTLQCVCCWEDRSKMFAEVESII 525
Query: 360 RRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRL 419
RRQ+NMSVLPSVQPFHAIAYPIDP+LALEISRKYA+HCSIIASRF LPPF HP +P++
Sbjct: 526 RRQINMSVLPSVQPFHAIAYPIDPILALEISRKYAAHCSIIASRFGLPPFTHPAGLPVKR 585
Query: 420 DGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEA 479
+GG +RLR+GYVSSDFGNHPLSHLMGSVFGMHN+ENVEVFCYALS ND TEWRQR QSEA
Sbjct: 586 EGGFKRLRIGYVSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSANDNTEWRQRIQSEA 645
Query: 480 EHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG 539
EHF+DVSAMSSD IAK+IN+DKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG
Sbjct: 646 EHFLDVSAMSSDAIAKIINQDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG 705
Query: 540 ASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLP 599
A+YIDYLVTDEFVSPL+YAHIYSEKLVH+PHCYFVNDYKQKN DVLDPN +PKRSDYGLP
Sbjct: 706 ATYIDYLVTDEFVSPLQYAHIYSEKLVHLPHCYFVNDYKQKNQDVLDPNSKPKRSDYGLP 765
Query: 600 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPD 659
EDKFIFACFNQLYKMDPEI NTWCNIL+RVPNSALWLLRFPAAGEMR R YA AQGVQPD
Sbjct: 766 EDKFIFACFNQLYKMDPEIVNTWCNILKRVPNSALWLLRFPAAGEMRFRTYAAAQGVQPD 825
Query: 660 QIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGS 719
QIIFTDVAMK EHIRRS LAD+ LDTPLCN HTTGTD+LWAG+PMITLPLEKMATRVAGS
Sbjct: 826 QIIFTDVAMKSEHIRRSVLADVILDTPLCNGHTTGTDVLWAGVPMITLPLEKMATRVAGS 885
Query: 720 LCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 779
LCLATGLG MIVNS++EYEE+AVSLAL++ KLQALT +L++ RLTCPLFDT RWVKNLE
Sbjct: 886 LCLATGLGHGMIVNSLEEYEEKAVSLALNKPKLQALTKELRASRLTCPLFDTMRWVKNLE 945
Query: 780 RSYFKMWSLHCSGQKPQHFKVTENDLDFPCDR 811
RSYFKMW+LHCSGQ+PQHFKV ENDL+FP DR
Sbjct: 946 RSYFKMWNLHCSGQQPQHFKVLENDLEFPHDR 977
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297833104|ref|XP_002884434.1| hypothetical protein ARALYDRAFT_896453 [Arabidopsis lyrata subsp. lyrata] gi|297330274|gb|EFH60693.1| hypothetical protein ARALYDRAFT_896453 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1503 bits (3891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 701/812 (86%), Positives = 758/812 (93%), Gaps = 1/812 (0%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
MRKGR +EA QCC+QAL+LNPLLVDAHSNLGNLMKAQGL+ EAYSCYLEA+RIQPTFAIA
Sbjct: 166 MRKGRFSEATQCCQQALSLNPLLVDAHSNLGNLMKAQGLIHEAYSCYLEAVRIQPTFAIA 225
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
WSNLAGLFMESGDLNRALQYYKEAVKLKP FPDAYLNLGNVYKALG P EAIMCYQ A+Q
Sbjct: 226 WSNLAGLFMESGDLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQHALQ 285
Query: 121 TRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 179
RPN A+AFGN+AS YYE+GQ D+AI +YKQAI DPRFLEAYNNLGNALKD+GRVDEAI
Sbjct: 286 MRPNCAMAFGNIASIYYEQGQLDLAIRHYKQAISRDPRFLEAYNNLGNALKDIGRVDEAI 345
Query: 180 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 239
+CYNQCL+LQP+HPQA+ NLGNIYMEWNM+ A+S +KATLAVTTGLSAPFNNLA+IYKQ
Sbjct: 346 RCYNQCLALQPNHPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQ 405
Query: 240 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 299
QGNY+DAISCYNEVLRIDPLAAD LVNRGNTYKEIGRVT+AIQDY+ AI RPTMAEAHA
Sbjct: 406 QGNYSDAISCYNEVLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAINFRPTMAEAHA 465
Query: 300 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGII 359
NLASAYKDSGHVEAAI SYKQALLLRPDFPEATCNLLHTLQCVC WEDR +MF+EVE II
Sbjct: 466 NLASAYKDSGHVEAAITSYKQALLLRPDFPEATCNLLHTLQCVCCWEDRSKMFAEVESII 525
Query: 360 RRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRL 419
RRQ+NMSVLPSVQPFHAIAYPIDP+LALEISRKYA+HCSIIASRF LPPF HP +P++
Sbjct: 526 RRQINMSVLPSVQPFHAIAYPIDPILALEISRKYAAHCSIIASRFGLPPFTHPAGLPVKR 585
Query: 420 DGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEA 479
+GG +RLR+GYVSSDFGNHPLSHLMGSVFGMHN+ENVEVFCYALS ND TEWRQR QSEA
Sbjct: 586 EGGFKRLRIGYVSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSANDNTEWRQRIQSEA 645
Query: 480 EHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG 539
EHF+DVS+MSSD IAK+INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG
Sbjct: 646 EHFLDVSSMSSDAIAKIINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG 705
Query: 540 ASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLP 599
A+YIDYLVTDEFVSPL+YAHIYSEKLVH+PHCYFVNDYKQKN DVLDPN +PKRSDYGLP
Sbjct: 706 ATYIDYLVTDEFVSPLQYAHIYSEKLVHLPHCYFVNDYKQKNQDVLDPNSKPKRSDYGLP 765
Query: 600 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPD 659
EDKFIFACFNQLYKMDPEI NTWCNIL+RVPNSALWLLRFPAAGEMR R YA AQGVQ D
Sbjct: 766 EDKFIFACFNQLYKMDPEIVNTWCNILKRVPNSALWLLRFPAAGEMRFRTYAAAQGVQSD 825
Query: 660 QIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGS 719
QIIFTDVAMK EHIRRS LAD+ LDTPLCN HTTGTD+LWAG+PMITLPLEKMATRVAGS
Sbjct: 826 QIIFTDVAMKSEHIRRSVLADVILDTPLCNGHTTGTDVLWAGVPMITLPLEKMATRVAGS 885
Query: 720 LCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 779
LCLATGLG EMIVNS++EYEE+AVSLAL++ KLQALT +L++ RLTCPLFDT RWVKNLE
Sbjct: 886 LCLATGLGHEMIVNSLEEYEEKAVSLALNKPKLQALTKELRASRLTCPLFDTMRWVKNLE 945
Query: 780 RSYFKMWSLHCSGQKPQHFKVTENDLDFPCDR 811
RSYFKMW+LHCSGQ+PQHFKV ENDL+FP DR
Sbjct: 946 RSYFKMWNLHCSGQQPQHFKVLENDLEFPHDR 977
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357441257|ref|XP_003590906.1| O-linked GlcNAc transferase like protein [Medicago truncatula] gi|355479954|gb|AES61157.1| O-linked GlcNAc transferase like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1425 bits (3690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 663/744 (89%), Positives = 717/744 (96%), Gaps = 1/744 (0%)
Query: 69 MESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIA 127
MESGD NRALQYYKEAVKLKP+FPDAYLNLGNVYKALGMPQEAI CYQ A+QTRPN +A
Sbjct: 1 MESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMA 60
Query: 128 FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 187
+GNLAS +YE+GQ DMAIL+YKQAI CDPRFLEAYNNLGNALKDVGRV+EAIQCYNQCLS
Sbjct: 61 YGNLASIHYEQGQLDMAILHYKQAIACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLS 120
Query: 188 LQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAI 247
LQP+HPQALTNLGNIYMEWNM+ AAASYYKATL VTTGLSAP+NNLA+IYKQQGNYADAI
Sbjct: 121 LQPNHPQALTNLGNIYMEWNMVAAAASYYKATLNVTTGLSAPYNNLAIIYKQQGNYADAI 180
Query: 248 SCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD 307
SCYNEVLRIDPLAADGLVNRGNTYKEIGRV+DAIQDYIRAIT+RPTMAEAHANLASAYKD
Sbjct: 181 SCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAITVRPTMAEAHANLASAYKD 240
Query: 308 SGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSV 367
SGHVEAA+KSY+QAL+LR DFPEATCNLLHTLQCVC WEDRD+MF EVEGIIRRQ+NMSV
Sbjct: 241 SGHVEAAVKSYRQALILRTDFPEATCNLLHTLQCVCCWEDRDQMFKEVEGIIRRQINMSV 300
Query: 368 LPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLR 427
LPSVQPFHAIAYP+DPMLALEISRKYA+HCS+IASRF+LPPF+HP PIPI+ +GG RLR
Sbjct: 301 LPSVQPFHAIAYPLDPMLALEISRKYAAHCSVIASRFSLPPFSHPAPIPIKQEGGYERLR 360
Query: 428 VGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA 487
+GYVSSDFGNHPLSHLMGSVFGMHN++NVEVFCYALSPNDGTEWRQR QSEAEHFVDVSA
Sbjct: 361 IGYVSSDFGNHPLSHLMGSVFGMHNRKNVEVFCYALSPNDGTEWRQRIQSEAEHFVDVSA 420
Query: 488 MSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLV 547
M+SD IAKLINEDKIQILINLNGYTKGARNEIFAM+PAP+QVSYMGFPGTTGA+YIDYLV
Sbjct: 421 MTSDTIAKLINEDKIQILINLNGYTKGARNEIFAMKPAPVQVSYMGFPGTTGATYIDYLV 480
Query: 548 TDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFAC 607
TDEFVSPL+YAHIYSEK+VH+PHCYFVNDYKQKN DVLDPNCQPKRSDYGLPEDKF+FAC
Sbjct: 481 TDEFVSPLQYAHIYSEKIVHLPHCYFVNDYKQKNQDVLDPNCQPKRSDYGLPEDKFLFAC 540
Query: 608 FNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVA 667
FNQLYKMDPEIFNTWCNIL+RVPNSALWLL+FPAAGEMRLRAYA AQGVQPDQIIFTDVA
Sbjct: 541 FNQLYKMDPEIFNTWCNILKRVPNSALWLLKFPAAGEMRLRAYAAAQGVQPDQIIFTDVA 600
Query: 668 MKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLG 727
MK EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPM+TLPLEKMATRVAGSLC++TGLG
Sbjct: 601 MKGEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMVTLPLEKMATRVAGSLCISTGLG 660
Query: 728 EEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 787
EEMIV+SMKEYE+RAVSLAL+R KLQALT+KLKSVRLTCPLFDT RWV+NL+R+YFKMW+
Sbjct: 661 EEMIVSSMKEYEDRAVSLALNRPKLQALTDKLKSVRLTCPLFDTNRWVRNLDRAYFKMWN 720
Query: 788 LHCSGQKPQHFKVTENDLDFPCDR 811
LHC+GQ+PQHFKVTEND + P D+
Sbjct: 721 LHCTGQRPQHFKVTENDNECPYDK 744
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 811 | ||||||
| TAIR|locus:2103025 | 977 | SEC "secret agent" [Arabidopsi | 1.0 | 0.830 | 0.854 | 0.0 | |
| MGI|MGI:1339639 | 1046 | Ogt "O-linked N-acetylglucosam | 0.702 | 0.544 | 0.458 | 3.4e-193 | |
| UNIPROTKB|A5D7G1 | 1036 | OGT "OGT protein" [Bos taurus | 0.702 | 0.550 | 0.458 | 1.1e-192 | |
| UNIPROTKB|F1RSV2 | 1046 | OGT "UDP-N-acetylglucosamine-- | 0.702 | 0.544 | 0.458 | 1.1e-192 | |
| UNIPROTKB|P81436 | 1046 | OGT "UDP-N-acetylglucosamine-- | 0.702 | 0.544 | 0.458 | 1.1e-192 | |
| UNIPROTKB|O15294 | 1046 | OGT "UDP-N-acetylglucosamine-- | 0.702 | 0.544 | 0.458 | 1.5e-192 | |
| UNIPROTKB|F1NX56 | 1035 | OGT "Uncharacterized protein" | 0.702 | 0.550 | 0.460 | 1.5e-192 | |
| UNIPROTKB|E2QSQ5 | 1046 | OGT "Uncharacterized protein" | 0.702 | 0.544 | 0.458 | 2.4e-192 | |
| UNIPROTKB|Q27HV0 | 1046 | OGT "UDP-N-acetylglucosamine-- | 0.702 | 0.544 | 0.458 | 3e-192 | |
| RGD|62060 | 1036 | Ogt "O-linked N-acetylglucosam | 0.702 | 0.550 | 0.458 | 8e-192 |
| TAIR|locus:2103025 SEC "secret agent" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3738 (1320.9 bits), Expect = 0., P = 0.
Identities = 694/812 (85%), Positives = 749/812 (92%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
MRKGRL+EA QCC+QAL+LNPLLVDAHSNLGNLMKAQGL+ EAYSCYLEA+RIQPTFAIA
Sbjct: 166 MRKGRLSEATQCCQQALSLNPLLVDAHSNLGNLMKAQGLIHEAYSCYLEAVRIQPTFAIA 225
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
WSNLAGLFMESGDLNRALQYYKEAVKLKP FPDAYLNLGNVYKALG P EAIMCYQ A+Q
Sbjct: 226 WSNLAGLFMESGDLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQHALQ 285
Query: 121 TRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 179
RPN A+AFGN+AS YYE+GQ D+AI +YKQA+ DPRFLEAYNNLGNALKD+GRVDEA+
Sbjct: 286 MRPNSAMAFGNIASIYYEQGQLDLAIRHYKQALSRDPRFLEAYNNLGNALKDIGRVDEAV 345
Query: 180 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 239
+CYNQCL+LQP+HPQA+ NLGNIYMEWNM+ A+S +KATLAVTTGLSAPFNNLA+IYKQ
Sbjct: 346 RCYNQCLALQPNHPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQ 405
Query: 240 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 299
QGNY+DAISCYNEVLRIDPLAAD LVNRGNTYKEIGRVT+AIQDY+ AI RPTMAEAHA
Sbjct: 406 QGNYSDAISCYNEVLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAINFRPTMAEAHA 465
Query: 300 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGII 359
NLASAYKDSGHVEAAI SYKQALLLRPDFPEATCNLLHTLQCVC WEDR +MF+EVE II
Sbjct: 466 NLASAYKDSGHVEAAITSYKQALLLRPDFPEATCNLLHTLQCVCCWEDRSKMFAEVESII 525
Query: 360 RRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXX 419
RRQ+NMSVLPSVQPFHAIAYPIDP+LALEISRKYA+HCSIIASRF LPPF HP +P+
Sbjct: 526 RRQINMSVLPSVQPFHAIAYPIDPILALEISRKYAAHCSIIASRFGLPPFTHPAGLPVKR 585
Query: 420 XXXXXXXXXXYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEA 479
YVSSDFGNHPLSHLMGSVFGMHN+ENVEVFCYALS ND TEWRQR QSEA
Sbjct: 586 EGGFKRLRIGYVSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSANDNTEWRQRIQSEA 645
Query: 480 EHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG 539
EHF+DVSAMSSD IAK+IN+DKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG
Sbjct: 646 EHFLDVSAMSSDAIAKIINQDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG 705
Query: 540 ASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLP 599
A+YIDYLVTDEFVSPL+YAHIYSEKLVH+PHCYFVNDYKQKN DVLDPN +PKRSDYGLP
Sbjct: 706 ATYIDYLVTDEFVSPLQYAHIYSEKLVHLPHCYFVNDYKQKNQDVLDPNSKPKRSDYGLP 765
Query: 600 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPD 659
EDKFIFACFNQLYKMDPEI NTWCNIL+RVPNSALWLLRFPAAGEMR R YA AQGVQPD
Sbjct: 766 EDKFIFACFNQLYKMDPEIVNTWCNILKRVPNSALWLLRFPAAGEMRFRTYAAAQGVQPD 825
Query: 660 QIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGS 719
QIIFTDVAMK EHIRRS LAD+ LDTPLCN HTTGTD+LWAG+PMITLPLEKMATRVAGS
Sbjct: 826 QIIFTDVAMKSEHIRRSVLADVILDTPLCNGHTTGTDVLWAGVPMITLPLEKMATRVAGS 885
Query: 720 LCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 779
LCLATGLG MIVNS++EYEE+AVSLAL++ KLQALT +L++ RLTCPLFDT RWVKNLE
Sbjct: 886 LCLATGLGHGMIVNSLEEYEEKAVSLALNKPKLQALTKELRASRLTCPLFDTMRWVKNLE 945
Query: 780 RSYFKMWSLHCSGQKPQHFKVTENDLDFPCDR 811
RSYFKMW+LHCSGQ+PQHFKV ENDL+FP DR
Sbjct: 946 RSYFKMWNLHCSGQQPQHFKVLENDLEFPHDR 977
|
|
| MGI|MGI:1339639 Ogt "O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1330 (473.2 bits), Expect = 3.4e-193, Sum P(2) = 3.4e-193
Identities = 264/576 (45%), Positives = 360/576 (62%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G + A Q AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSN
Sbjct: 137 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 196
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
L +F G++ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ P
Sbjct: 197 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 256
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
N A+ GNLA YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CY
Sbjct: 257 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 316
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
N L L P+H +L NL NI E + A Y+ L V +A +NLA + +QQG
Sbjct: 317 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 376
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+A+ Y E +RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLA
Sbjct: 377 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 436
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQ 362
S +KDSG++ AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q
Sbjct: 437 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAEQ 496
Query: 363 VNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXX 422
+ + LPSV P H++ YP+ I+ ++ + C + PP+ HP + +
Sbjct: 497 LEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRL 556
Query: 423 XXXXXXXYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHF 482
YVSSDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF
Sbjct: 557 RVG----YVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHF 612
Query: 483 VDVSAMSSD-MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGAS 541
+D+S + + A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA
Sbjct: 613 IDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGAL 672
Query: 542 YIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDY 577
++DY++TD+ SP A YSEKL ++PH +F+ D+
Sbjct: 673 FMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDH 708
|
|
| UNIPROTKB|A5D7G1 OGT "OGT protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1328 (472.5 bits), Expect = 1.1e-192, Sum P(2) = 1.1e-192
Identities = 264/576 (45%), Positives = 360/576 (62%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G + A Q AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSN
Sbjct: 127 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 186
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
L +F G++ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ P
Sbjct: 187 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 246
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
N A+ GNLA YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CY
Sbjct: 247 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 306
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
N L L P+H +L NL NI E + A Y+ L V +A +NLA + +QQG
Sbjct: 307 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 366
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+A+ Y E +RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLA
Sbjct: 367 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 426
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQ 362
S +KDSG++ AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q
Sbjct: 427 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 486
Query: 363 VNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXX 422
+ + LPSV P H++ YP+ I+ ++ + C + PP+ HP + +
Sbjct: 487 LEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRL 546
Query: 423 XXXXXXXYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHF 482
YVSSDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF
Sbjct: 547 RVG----YVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHF 602
Query: 483 VDVSAMSSD-MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGAS 541
+D+S + + A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA
Sbjct: 603 IDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGAL 662
Query: 542 YIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDY 577
++DY++TD+ SP A YSEKL ++PH +F+ D+
Sbjct: 663 FMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDH 698
|
|
| UNIPROTKB|F1RSV2 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1328 (472.5 bits), Expect = 1.1e-192, Sum P(2) = 1.1e-192
Identities = 264/576 (45%), Positives = 360/576 (62%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G + A Q AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSN
Sbjct: 137 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 196
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
L +F G++ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ P
Sbjct: 197 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 256
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
N A+ GNLA YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CY
Sbjct: 257 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 316
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
N L L P+H +L NL NI E + A Y+ L V +A +NLA + +QQG
Sbjct: 317 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 376
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+A+ Y E +RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLA
Sbjct: 377 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 436
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQ 362
S +KDSG++ AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q
Sbjct: 437 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 496
Query: 363 VNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXX 422
+ + LPSV P H++ YP+ I+ ++ + C + PP+ HP + +
Sbjct: 497 LEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRL 556
Query: 423 XXXXXXXYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHF 482
YVSSDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF
Sbjct: 557 RVG----YVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHF 612
Query: 483 VDVSAMSSD-MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGAS 541
+D+S + + A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA
Sbjct: 613 IDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGAL 672
Query: 542 YIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDY 577
++DY++TD+ SP A YSEKL ++PH +F+ D+
Sbjct: 673 FMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDH 708
|
|
| UNIPROTKB|P81436 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Oryctolagus cuniculus (taxid:9986)] | Back alignment and assigned GO terms |
|---|
Score = 1328 (472.5 bits), Expect = 1.1e-192, Sum P(2) = 1.1e-192
Identities = 264/576 (45%), Positives = 360/576 (62%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G + A Q AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSN
Sbjct: 137 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 196
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
L +F G++ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ P
Sbjct: 197 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 256
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
N A+ GNLA YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CY
Sbjct: 257 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 316
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
N L L P+H +L NL NI E + A Y+ L V +A +NLA + +QQG
Sbjct: 317 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 376
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+A+ Y E +RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLA
Sbjct: 377 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 436
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQ 362
S +KDSG++ AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q
Sbjct: 437 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 496
Query: 363 VNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXX 422
+ + LPSV P H++ YP+ I+ ++ + C + PP+ HP + +
Sbjct: 497 LEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRL 556
Query: 423 XXXXXXXYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHF 482
YVSSDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF
Sbjct: 557 RVG----YVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHF 612
Query: 483 VDVSAMSSD-MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGAS 541
+D+S + + A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA
Sbjct: 613 IDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGAL 672
Query: 542 YIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDY 577
++DY++TD+ SP A YSEKL ++PH +F+ D+
Sbjct: 673 FMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDH 708
|
|
| UNIPROTKB|O15294 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1328 (472.5 bits), Expect = 1.5e-192, Sum P(2) = 1.5e-192
Identities = 264/576 (45%), Positives = 360/576 (62%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G + A Q AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSN
Sbjct: 137 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 196
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
L +F G++ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ P
Sbjct: 197 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 256
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
N A+ GNLA YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CY
Sbjct: 257 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 316
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
N L L P+H +L NL NI E + A Y+ L V +A +NLA + +QQG
Sbjct: 317 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 376
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+A+ Y E +RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLA
Sbjct: 377 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 436
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQ 362
S +KDSG++ AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q
Sbjct: 437 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 496
Query: 363 VNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXX 422
+ + LPSV P H++ YP+ I+ ++ + C + PP+ HP + +
Sbjct: 497 LEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRL 556
Query: 423 XXXXXXXYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHF 482
YVSSDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF
Sbjct: 557 RVG----YVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHF 612
Query: 483 VDVSAMSSD-MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGAS 541
+D+S + + A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA
Sbjct: 613 IDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGAL 672
Query: 542 YIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDY 577
++DY++TD+ SP A YSEKL ++PH +F+ D+
Sbjct: 673 FMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDH 708
|
|
| UNIPROTKB|F1NX56 OGT "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1326 (471.8 bits), Expect = 1.5e-192, Sum P(2) = 1.5e-192
Identities = 265/576 (46%), Positives = 361/576 (62%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G + A Q AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSN
Sbjct: 127 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 186
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
L +F G++ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ P
Sbjct: 187 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 246
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
N A+ GNLA YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA +CY
Sbjct: 247 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECY 306
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
N L L P+H +L NL NI E + A Y+ L V +A +NLA + +QQG
Sbjct: 307 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 366
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+A+ Y E +RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLA
Sbjct: 367 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 426
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQ 362
S +KDSG++ AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q
Sbjct: 427 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 486
Query: 363 VNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXX 422
+ + LPSV P H++ YP+ I+ ++ + C + PP+ HP +
Sbjct: 487 LEKNRLPSVHPHHSMLYPLSHSFRKAIAERHGNLCLDKINVLHKPPYEHPKDLK----AS 542
Query: 423 XXXXXXXYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHF 482
YVSSDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF
Sbjct: 543 EGRLRIGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHF 602
Query: 483 VDVSAMSSD-MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGAS 541
VD+S + + A I++D I ILIN+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA
Sbjct: 603 VDLSQIPCNGKAADRIHQDGIHILINMNGYTKGARNELFALRPAPIQAMWLGYPGTSGAL 662
Query: 542 YIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDY 577
++DY++TD+ SP+ A YSEKL ++P+ +F+ D+
Sbjct: 663 FMDYIITDKETSPVEVAEQYSEKLAYMPNTFFIGDH 698
|
|
| UNIPROTKB|E2QSQ5 OGT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1328 (472.5 bits), Expect = 2.4e-192, Sum P(2) = 2.4e-192
Identities = 264/576 (45%), Positives = 360/576 (62%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G + A Q AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSN
Sbjct: 137 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 196
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
L +F G++ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ P
Sbjct: 197 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 256
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
N A+ GNLA YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CY
Sbjct: 257 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 316
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
N L L P+H +L NL NI E + A Y+ L V +A +NLA + +QQG
Sbjct: 317 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 376
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+A+ Y E +RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLA
Sbjct: 377 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 436
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQ 362
S +KDSG++ AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q
Sbjct: 437 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 496
Query: 363 VNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXX 422
+ + LPSV P H++ YP+ I+ ++ + C + PP+ HP + +
Sbjct: 497 LEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRL 556
Query: 423 XXXXXXXYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHF 482
YVSSDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF
Sbjct: 557 RVG----YVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHF 612
Query: 483 VDVSAMSSD-MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGAS 541
+D+S + + A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA
Sbjct: 613 IDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGAL 672
Query: 542 YIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDY 577
++DY++TD+ SP A YSEKL ++PH +F+ D+
Sbjct: 673 FMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDH 708
|
|
| UNIPROTKB|Q27HV0 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1328 (472.5 bits), Expect = 3.0e-192, Sum P(2) = 3.0e-192
Identities = 264/576 (45%), Positives = 360/576 (62%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G + A Q AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSN
Sbjct: 137 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 196
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
L +F G++ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ P
Sbjct: 197 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 256
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
N A+ GNLA YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CY
Sbjct: 257 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 316
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
N L L P+H +L NL NI E + A Y+ L V +A +NLA + +QQG
Sbjct: 317 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 376
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+A+ Y E +RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLA
Sbjct: 377 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 436
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQ 362
S +KDSG++ AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q
Sbjct: 437 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 496
Query: 363 VNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXX 422
+ + LPSV P H++ YP+ I+ ++ + C + PP+ HP + +
Sbjct: 497 LEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRL 556
Query: 423 XXXXXXXYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHF 482
YVSSDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF
Sbjct: 557 RVG----YVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHF 612
Query: 483 VDVSAMSSD-MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGAS 541
+D+S + + A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA
Sbjct: 613 IDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGAL 672
Query: 542 YIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDY 577
++DY++TD+ SP A YSEKL ++PH +F+ D+
Sbjct: 673 FMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDH 708
|
|
| RGD|62060 Ogt "O-linked N-acetylglucosamine (GlcNAc) transferase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1330 (473.2 bits), Expect = 8.0e-192, Sum P(2) = 8.0e-192
Identities = 264/576 (45%), Positives = 360/576 (62%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G + A Q AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSN
Sbjct: 127 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 186
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
L +F G++ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ P
Sbjct: 187 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 246
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
N A+ GNLA YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CY
Sbjct: 247 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 306
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
N L L P+H +L NL NI E + A Y+ L V +A +NLA + +QQG
Sbjct: 307 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 366
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+A+ Y E +RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLA
Sbjct: 367 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 426
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQ 362
S +KDSG++ AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q
Sbjct: 427 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAEQ 486
Query: 363 VNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXX 422
+ + LPSV P H++ YP+ I+ ++ + C + PP+ HP + +
Sbjct: 487 LEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRL 546
Query: 423 XXXXXXXYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHF 482
YVSSDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF
Sbjct: 547 RVG----YVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHF 602
Query: 483 VDVSAMSSD-MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGAS 541
+D+S + + A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA
Sbjct: 603 IDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGAL 662
Query: 542 YIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDY 577
++DY++TD+ SP A YSEKL ++PH +F+ D+
Sbjct: 663 FMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDH 698
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9M8Y0 | SEC_ARATH | 2, ., 4, ., 1, ., - | 0.8620 | 1.0 | 0.8300 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.4.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | SPY1 | hypothetical protein (926 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 811 | |||
| COG3914 | 620 | COG3914, Spy, Predicted O-linked N-acetylglucosami | 1e-102 | |
| pfam13844 | 468 | pfam13844, Glyco_transf_41, Glycosyl transferase f | 2e-77 | |
| pfam13844 | 468 | pfam13844, Glyco_transf_41, Glycosyl transferase f | 2e-72 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-23 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 4e-23 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-22 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 5e-22 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 4e-21 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-20 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-20 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-20 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-19 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-19 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-19 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 4e-19 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-18 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-17 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-16 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 7e-16 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 1e-15 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 3e-15 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 7e-13 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-12 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-12 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 7e-12 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 1e-11 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 4e-11 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 5e-11 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 6e-11 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-10 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 3e-10 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-10 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 1e-09 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-09 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-09 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 3e-09 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-09 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 5e-09 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 7e-09 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 2e-08 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 2e-08 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 5e-08 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 5e-08 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 7e-08 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 9e-08 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 1e-07 | |
| PRK11447 | 1157 | PRK11447, PRK11447, cellulose synthase subunit Bcs | 3e-07 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 1e-06 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 1e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-06 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 2e-06 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 3e-06 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 3e-06 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-06 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 5e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 6e-06 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 7e-06 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 7e-06 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 7e-06 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 9e-06 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 1e-05 | |
| TIGR03939 | 800 | TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g | 1e-05 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 1e-05 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 2e-05 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 2e-05 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 2e-05 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 3e-05 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 6e-05 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 9e-05 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 1e-04 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 1e-04 | |
| PLN03088 | 356 | PLN03088, PLN03088, SGT1, suppressor of G2 allele | 1e-04 | |
| PRK02603 | 172 | PRK02603, PRK02603, photosystem I assembly protein | 1e-04 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 1e-04 | |
| PRK11447 | 1157 | PRK11447, PRK11447, cellulose synthase subunit Bcs | 2e-04 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 2e-04 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 2e-04 | |
| CHL00033 | 168 | CHL00033, ycf3, photosystem I assembly protein Ycf | 2e-04 | |
| TIGR03939 | 800 | TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g | 3e-04 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 3e-04 | |
| PRK11788 | 389 | PRK11788, PRK11788, tetratricopeptide repeat prote | 3e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 4e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 5e-04 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 7e-04 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 8e-04 | |
| TIGR03939 | 800 | TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g | 8e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 9e-04 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 0.001 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 0.001 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 0.001 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 0.001 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 0.001 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 0.002 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 0.002 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 0.002 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 0.003 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 0.003 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 0.003 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 0.003 | |
| PRK11788 | 389 | PRK11788, PRK11788, tetratricopeptide repeat prote | 0.004 | |
| TIGR02552 | 135 | TIGR02552, LcrH_SycD, type III secretion low calci | 0.004 |
| >gnl|CDD|226428 COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 329 bits (845), Expect = e-102
Identities = 177/567 (31%), Positives = 268/567 (47%), Gaps = 31/567 (5%)
Query: 231 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR-AIT 289
L+++ + A L ++P + N + G A+ D A
Sbjct: 71 AFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEW 130
Query: 290 IRPTMAEAHANLASAYKDS------GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVC 343
+ P AE +L Y+ G A + ++A+ L P +P L+ Q C
Sbjct: 131 LSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQC 190
Query: 344 SWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASR 403
SW E +++ + F DP+ L I+ + S A
Sbjct: 191 SWP--------EEAPTNLLSQLALFLGIYGFSLAYLADDPLKNLAIANQLLKILSQNAP- 241
Query: 404 FALPPFNHPV-PIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYA 462
L F P+ I+ +G +RLRVGY+SSD +H + L+ VF H+++ EVF Y+
Sbjct: 242 -ELVRF--PIRDENIKRNG--KRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYS 296
Query: 463 LSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAM 522
L P ++R + E + + M IA I D I IL++L+G+T R ++FA
Sbjct: 297 LGPPHTDALQERISAAVEKWYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTRCQVFAH 356
Query: 523 QPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNM 582
+PAPIQVS++G+P TTG+ +DY ++D + P YSEKL +P CY D +
Sbjct: 357 RPAPIQVSWLGYPATTGSPNMDYFISDPYTVPPTAEEYYSEKLWRLPQCYQPVDGFEPV- 415
Query: 583 DVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA 642
P R+ GLPED +F CFN +K+ PE+F W IL VPNS L L
Sbjct: 416 -----TPPPSRAQLGLPEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDD 470
Query: 643 GEM--RLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWA 700
E+ RLR A +GV +++ F A ++H R +ADL LDT HTT +D LW
Sbjct: 471 AEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYPYGGHTTASDALWM 530
Query: 701 GLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLK 760
G+P++T E+ A+R S+ G+ E++ +S +Y E+AV+ DR Q + +LK
Sbjct: 531 GVPVLTRVGEQFASRNGASIATNAGI-PELVADSRADYVEKAVAFGSDRALRQQVRAELK 589
Query: 761 SVRLTCPLFDTARWVKNLERSYFKMWS 787
R T PLFD + + LE Y+ MWS
Sbjct: 590 RSRQTSPLFDPKAFARKLETLYWGMWS 616
|
Length = 620 |
| >gnl|CDD|206015 pfam13844, Glyco_transf_41, Glycosyl transferase family 41 | Back alignment and domain information |
|---|
Score = 257 bits (659), Expect = 2e-77
Identities = 101/194 (52%), Positives = 134/194 (69%), Gaps = 1/194 (0%)
Query: 593 RSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAV 652
R YGLP+D ++ FNQLYK+DP W NIL+RVPNS LWLLRFPA GE ++AYA
Sbjct: 276 RQQYGLPDDAIVYCNFNQLYKIDPSTLQMWVNILKRVPNSVLWLLRFPAVGEANIQAYAQ 335
Query: 653 AQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM 712
G+ P +I+F++VA K+EH+RR LAD+ LDTPLCN HTTG D+LWAG PM+T+PLE +
Sbjct: 336 EMGLPPRRIVFSNVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPLETL 395
Query: 713 ATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTA 772
A+RVA S G E+I +EYE+ AV L DR+ L+ + K+ R + LF+T
Sbjct: 396 ASRVAASQLTTLGC-PELIAKDRQEYEDIAVKLGTDREYLRKIRAKVWKARTSSTLFNTK 454
Query: 773 RWVKNLERSYFKMW 786
++ ++LER Y KMW
Sbjct: 455 QYCQDLERLYLKMW 468
|
This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1. Length = 468 |
| >gnl|CDD|206015 pfam13844, Glyco_transf_41, Glycosyl transferase family 41 | Back alignment and domain information |
|---|
Score = 244 bits (625), Expect = 2e-72
Identities = 92/155 (59%), Positives = 124/155 (80%), Gaps = 1/155 (0%)
Query: 426 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDV 485
LR+GYVSSDFGNHP SHLM S+ GMHN+ VEVFCYALSP+DGT +R + +E+EHFVD+
Sbjct: 1 LRIGYVSSDFGNHPTSHLMQSIPGMHNRSKVEVFCYALSPDDGTNFRSKVMAESEHFVDL 60
Query: 486 SAMSSD-MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYID 544
S + + A I++D I IL+N+NGYTKGARNEIFA++PAPIQV ++G+PGT+GA+++D
Sbjct: 61 SQIPCNGKAADRIHQDGIHILVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGATFMD 120
Query: 545 YLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQ 579
Y++TD SP+ A YSEKL ++PH +F+ D+ Q
Sbjct: 121 YIITDSVTSPMELADQYSEKLAYMPHTFFIGDHAQ 155
|
This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1. Length = 468 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 2e-23
Identities = 38/96 (39%), Positives = 54/96 (56%)
Query: 29 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 88
NLGNL G EA Y +AL + P A A+ NLA + + G AL+ Y++A++L
Sbjct: 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64
Query: 89 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
P AY NLG Y LG +EA+ Y++A++ PN
Sbjct: 65 PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 4e-23
Identities = 88/363 (24%), Positives = 139/363 (38%), Gaps = 35/363 (9%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G L +A Q Q L P A L ++ G V EA + AL + P A S
Sbjct: 309 GNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSL 368
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
L ++ GD +A +Y +A +L P A LG + G P EAI + A Q P
Sbjct: 369 LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP 428
Query: 124 N------AIAFGNL-----------------------------ASTYYERGQADMAILYY 148
+ L + Y +G A +
Sbjct: 429 ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAF 488
Query: 149 KQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNM 208
++A+ +P F A NL G D+AIQ + + L++ P + +A+ L +Y+
Sbjct: 489 EKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGN 548
Query: 209 LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 268
A ++ + + P LA Y +G A++ NE P + + + G
Sbjct: 549 EEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLG 608
Query: 269 NTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 328
G + A+ + + + ++P A A LA AY + AI S K+AL L+PD
Sbjct: 609 RAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN 668
Query: 329 PEA 331
EA
Sbjct: 669 TEA 671
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 5e-22
Identities = 41/100 (41%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 93 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 151
+A LNLGN+Y LG EA+ Y++A++ P NA A+ NLA+ YY+ G+ + A+ Y++A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 152 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 191
+ DP +AY NLG A +G+ +EA++ Y + L L P+
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.8 bits (239), Expect = 5e-22
Identities = 70/200 (35%), Positives = 110/200 (55%), Gaps = 8/200 (4%)
Query: 1 MRKGRLNEAAQCCRQALA--LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA 58
++ GRL EA + +AL L P L +A NLG L++A G +EA +AL + P
Sbjct: 70 LKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD 129
Query: 59 IAWSNLA-GLFMESGDLNRALQYYKEAVKLKPT---FPDAYLNLGNVYKALGMPQEAIMC 114
+A + LA G E GD AL+ Y++A++L P +A L LG + +ALG +EA+
Sbjct: 130 LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189
Query: 115 YQRAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV 172
++A++ P+ A A NL Y + G+ + A+ YY++A+ DP EA NL L ++
Sbjct: 190 LEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL 249
Query: 173 GRVDEAIQCYNQCLSLQPSH 192
GR +EA++ + L L P
Sbjct: 250 GRYEEALEALEKALELDPDL 269
|
Length = 291 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 4e-21
Identities = 76/336 (22%), Positives = 118/336 (35%), Gaps = 36/336 (10%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+++G ++A Q + L ++P + A L L G +EA + +A + P
Sbjct: 510 IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEP 569
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
LA ++ G L +AL EA P P+A+L LG A G +A+ +++ +
Sbjct: 570 ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629
Query: 121 TRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 179
+P +A+A LA Y AI K+A+ P EA L L R + A
Sbjct: 630 LQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAK 689
Query: 180 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 239
+ P G++Y+ PAA Y+ L S L
Sbjct: 690 KIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK-RAPSSQNAIKLHRALLA 748
Query: 240 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 299
GN A+A+ L+ P DA+
Sbjct: 749 SGNTAEAVKTLEAWLKTHP-------------------NDAV---------------LRT 774
Query: 300 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
LA Y + AIK Y+ + PD NL
Sbjct: 775 ALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNL 810
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 1e-20
Identities = 79/361 (21%), Positives = 135/361 (37%), Gaps = 35/361 (9%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI------- 53
+ G +AA+ +A L+P A + LG +QG EA + A ++
Sbjct: 374 LALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRA 433
Query: 54 ---------------------------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVK 86
QP A + L +++ GDL +A + +++A+
Sbjct: 434 DLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALS 493
Query: 87 LKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI-AFGNLASTYYERGQADMAI 145
++P F A NL + G P +AI +++ + P + A LA Y G + A+
Sbjct: 494 IEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAV 553
Query: 146 LYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME 205
+ ++A +P+ +E L G++ +A+ N+ P P+A LG +
Sbjct: 554 AWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLA 613
Query: 206 WNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLV 265
L A S +K LA+ + LA Y NYA AI+ L + P + +
Sbjct: 614 AGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQI 673
Query: 266 NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 325
R A + P A Y AAI++Y++AL
Sbjct: 674 GLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733
Query: 326 P 326
P
Sbjct: 734 P 734
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 2e-20
Identities = 76/316 (24%), Positives = 123/316 (38%), Gaps = 3/316 (0%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 61
KG+L +A +A P +A LG A G + +A S + + L +QP A+A
Sbjct: 579 GKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALAL 638
Query: 62 SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 121
LA + + +A+ K A++LKP +A + L + A + A + +
Sbjct: 639 LLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698
Query: 122 RPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 180
P A+ F Y + AI Y++A+ P A L AL G EA++
Sbjct: 699 HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI-KLHRALLASGNTAEAVK 757
Query: 181 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 240
L P+ T L +Y+ A +Y+ + + NNLA +Y +
Sbjct: 758 TLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL 817
Query: 241 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN 300
+ A+ L++ P L G E G A+ +A+ I P A +
Sbjct: 818 KD-PRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYH 876
Query: 301 LASAYKDSGHVEAAIK 316
LA A +G A K
Sbjct: 877 LALALLATGRKAEARK 892
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.6 bits (228), Expect = 2e-20
Identities = 75/299 (25%), Positives = 127/299 (42%), Gaps = 48/299 (16%)
Query: 33 LMKAQGLVQEAYSCYLEALRIQP--TFAIAWSNLAGLFMESGDLNRALQYYKEAVK--LK 88
L++ G + EA EAL + P A LA ++ G L AL+ ++A++ L
Sbjct: 32 LLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELL 91
Query: 89 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLA--STYYERGQADMAIL 146
P +A LNLG + +ALG +EA+ ++A+ P+ L YE G + A+
Sbjct: 92 PNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALE 151
Query: 147 YYKQAIGCDP---RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 203
Y++A+ DP EA LG L+ +GR +EA++ + L L P
Sbjct: 152 LYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD----------- 200
Query: 204 MEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADG 263
+ NL ++Y + G Y +A+ Y + L +DP A+
Sbjct: 201 ----------------------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEA 238
Query: 264 LVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 322
L N E+GR +A++ +A+ + P NL A + A++ ++A
Sbjct: 239 LYNLALLLLELGRYEEALEALEKALELDP----DLYNLGLALLL--LLAEALELLEKAD 291
|
Length = 291 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 2e-19
Identities = 79/338 (23%), Positives = 135/338 (39%), Gaps = 4/338 (1%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+ G+L A + QALA++P + A L L A+ EA + E L P A
Sbjct: 136 LGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDA 195
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
L + G++ AL Y++A+ L+P L L + G +EA + A+
Sbjct: 196 LLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA-EKHADALL 254
Query: 121 TRPNAIAFGNL--ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEA 178
+ + A +++ + A + A+ P +L A G + +G +++A
Sbjct: 255 KKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQA 314
Query: 179 IQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYK 238
Q NQ L P+ QA L +I + + A + L + A + L Y
Sbjct: 315 YQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYL 374
Query: 239 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 298
G++ A + +DP A G + G ++AI D A + P + A
Sbjct: 375 ALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRAD 434
Query: 299 ANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLL 336
L +Y SG + A+ + K+ +PD + NLL
Sbjct: 435 LLLILSYLRSGQFDKALAAAKKLEKKQPDNA-SLHNLL 471
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.1 bits (219), Expect = 2e-19
Identities = 72/266 (27%), Positives = 122/266 (45%), Gaps = 11/266 (4%)
Query: 73 DLNRALQYYKEAVKLKPTFPDAYLNLGN-VYKALGMPQEAIMCYQRAVQTRPN---AIAF 128
DL AL EA+ A L G + + LG EA+ + A++ PN A
Sbjct: 3 DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLL 62
Query: 129 GNLASTYYERGQADMAILYYKQAIG--CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL 186
LA + G+ + A+ ++A+ P EA NLG L+ +G+ +EA++ + L
Sbjct: 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122
Query: 187 SLQPSHPQALTNLG-NIYMEWNMLPAAASYYKATLAVTTGLSAPFN---NLAVIYKQQGN 242
+L P A L E A Y+ L + L+ L + + G
Sbjct: 123 ALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR 182
Query: 243 YADAISCYNEVLRIDP-LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 301
Y +A+ + L+++P A+ L+N G Y ++G+ +A++ Y +A+ + P AEA NL
Sbjct: 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNL 242
Query: 302 ASAYKDSGHVEAAIKSYKQALLLRPD 327
A + G E A+++ ++AL L PD
Sbjct: 243 ALLLLELGRYEEALEALEKALELDPD 268
|
Length = 291 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 4e-19
Identities = 39/98 (39%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 60 AWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 119
A NL L+ + GD + AL+YY++A++L P DAY NL Y LG +EA+ Y++A+
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 120 QTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDP 156
+ P NA A+ NL YY+ G+ + A+ Y++A+ DP
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 4e-19
Identities = 81/320 (25%), Positives = 117/320 (36%), Gaps = 12/320 (3%)
Query: 15 QALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDL 74
A L L A+ LG L AQ Y +AL I P A LA L +
Sbjct: 123 GAAELLALRGLAYLGLGQLELAQ-------KSYEQALAIDPRSLYAKLGLAQLALAENRF 175
Query: 75 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIA-FGNLAS 133
+ A E + P DA L G++ +LG + A+ Y++A+ RPN IA LA+
Sbjct: 176 DEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALAT 235
Query: 134 TYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV--GRVDEAIQCYNQCLSLQPS 191
E G+ + A + + P A + AL D ++A + L P
Sbjct: 236 ILIEAGEFEEAEKHADALLKKAPNSPLA--HYLKALVDFQKKNYEDARETLQDALKSAPE 293
Query: 192 HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYN 251
+ AL G + L A Y L LA I + G +AI+ +
Sbjct: 294 YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLS 353
Query: 252 EVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHV 311
L +DP L G Y +G A + +A + P A A L + G
Sbjct: 354 PALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDP 413
Query: 312 EAAIKSYKQALLLRPDFPEA 331
AI + A L P+ A
Sbjct: 414 SEAIADLETAAQLDPELGRA 433
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 4e-18
Identities = 34/98 (34%), Positives = 58/98 (59%)
Query: 230 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 289
NL +Y + G+Y +A+ Y + L +DP AD N Y ++G+ +A++DY +A+
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62
Query: 290 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 327
+ P A+A+ NL AY G E A+++Y++AL L P+
Sbjct: 63 LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-17
Identities = 31/99 (31%), Positives = 47/99 (47%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
EA NLGN +G DEA++ Y + L L P + A NL Y + A Y+
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 220 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 258
L + + + NL + Y + G Y +A+ Y + L +DP
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 5e-16
Identities = 32/93 (34%), Positives = 50/93 (53%)
Query: 130 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 189
NL + YY+ G D A+ YY++A+ DP +AY NL A +G+ +EA++ Y + L L
Sbjct: 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64
Query: 190 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAV 222
P + +A NLG Y + A Y+ L +
Sbjct: 65 PDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 7e-16
Identities = 29/90 (32%), Positives = 46/90 (51%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+ G +EA + +AL L+P DA+ NL G +EA Y +AL + P A A
Sbjct: 11 YKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKA 70
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPT 90
+ NL + + G AL+ Y++A++L P
Sbjct: 71 YYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.3 bits (191), Expect = 1e-15
Identities = 58/215 (26%), Positives = 95/215 (44%), Gaps = 9/215 (4%)
Query: 135 YYERGQADMAILYYKQAIGCDPR--FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ--P 190
G+ A+ ++A+ P L AL +GR++EA++ + L L+ P
Sbjct: 33 LELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLP 92
Query: 191 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-TGLSAPFNNLAVIYKQQGNYADAISC 249
+ +AL NLG + A + LA+ A + G+Y +A+
Sbjct: 93 NLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALEL 152
Query: 250 YNEVLRIDP---LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP-TMAEAHANLASAY 305
Y + L +DP A+ L+ G + +GR +A++ +A+ + P AEA NL Y
Sbjct: 153 YEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY 212
Query: 306 KDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
G E A++ Y++AL L PD EA NL L
Sbjct: 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLL 247
|
Length = 291 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 3e-15
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 5/159 (3%)
Query: 63 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 122
LA ++E GDL A + +A++ P AYL L Y+ LG ++A ++RA+
Sbjct: 36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN 95
Query: 123 PN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE---AYNNLGNALKDVGRVDEA 178
PN N + ++G+ + A+ ++QAI DP + + + N G G D+A
Sbjct: 96 PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE-DPLYPQPARSLENAGLCALKAGDFDKA 154
Query: 179 IQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYK 217
+ + L + P P++L L +Y A +Y +
Sbjct: 155 EKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLE 193
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.9 bits (169), Expect = 7e-13
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 4/151 (2%)
Query: 1 MRKGRLNEAAQCCRQALALNP---LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP-T 56
G EA + +AL L+P L +A LG L++A G +EA +AL++ P
Sbjct: 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD 200
Query: 57 FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQ 116
A A NL L+++ G AL+YY++A++L P +A NL + LG +EA+ +
Sbjct: 201 DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALE 260
Query: 117 RAVQTRPNAIAFGNLASTYYERGQADMAILY 147
+A++ P+ G +
Sbjct: 261 KALELDPDLYNLGLALLLLLAEALELLEKAD 291
|
Length = 291 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-12
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG-MPQEAIMCYQ 116
A A NL + GD + A++ Y++A++L P +AY NL Y LG +EA+ +
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62
Query: 117 RAVQTRP 123
+A++ P
Sbjct: 63 KALELDP 69
|
Length = 69 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 3e-12
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 264 LVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 323
L+N GN Y ++G +A++ Y +A+ + P A+A+ NLA+AY G E A++ Y++AL
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62
Query: 324 LRPDFPEATCNLLHTLQ 340
L PD +A NL
Sbjct: 63 LDPDNAKAYYNLGLAYY 79
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 7e-12
Identities = 77/357 (21%), Positives = 120/357 (33%), Gaps = 80/357 (22%)
Query: 50 ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP-------------------- 89
AL+ P A A L +++ GD A + ++A+ L
Sbjct: 48 ALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQ 107
Query: 90 ----TFPDAYLN-----------LGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLAS 133
P L G Y LG + A Y++A+ P + A LA
Sbjct: 108 QVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQ 167
Query: 134 TYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP 193
+ D A + + DP ++A G+ L +G ++ A+ Y + ++L+P++
Sbjct: 168 LALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNI 227
Query: 194 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYK-----QQGNYADAIS 248
L L I +E A + A L AP + LA K Q+ NY DA
Sbjct: 228 AVLLALATILIEAGEFEEAEKHADALLK-----KAPNSPLAHYLKALVDFQKKNYEDARE 282
Query: 249 CYNEVLRIDP-------LAADGLVNRGN---------------------------TYKEI 274
+ L+ P LA GN +
Sbjct: 283 TLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRL 342
Query: 275 GRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 331
GRV +AI A+ + P A + L AY G E A + +A L P+ A
Sbjct: 343 GRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAA 399
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 1e-11
Identities = 64/293 (21%), Positives = 123/293 (41%), Gaps = 31/293 (10%)
Query: 8 EAAQCCRQALALNPL---LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNL 64
EAA+ +AL L L A + G +G EA + +++ + P ++
Sbjct: 312 EAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKR 371
Query: 65 AGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
A + +E GD ++A + + +A+KL PD Y + ++ G +A YQ+++ P+
Sbjct: 372 ASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431
Query: 125 AI-AFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 183
I + L T Y+ G ++ +++ P + YN G L D + DEAI+ ++
Sbjct: 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFD 491
Query: 184 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 243
+ L+ +YM N+LP KA +++ + ++
Sbjct: 492 TAIELE-------KETKPMYM--NVLPLIN---KALA---------------LFQWKQDF 524
Query: 244 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 296
+A + + L IDP + + G V +A++ + RA + T E
Sbjct: 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 4e-11
Identities = 44/189 (23%), Positives = 69/189 (36%), Gaps = 21/189 (11%)
Query: 144 AILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 203
A L K++ L A G+ DEA++ ++ QP +P L G+I
Sbjct: 294 ADLLAKRS---KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDIL 350
Query: 204 MEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADG 263
+E N A K LA+ NLA + G +AI N L DP +G
Sbjct: 351 LEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNG 410
Query: 264 LVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL- 322
+ + + + + AEA A Y +G +E AI +A
Sbjct: 411 -------WDLLAQAYAELGN----------RAEALLARAEGYALAGRLEQAIIFLMRASQ 453
Query: 323 LLRPDFPEA 331
++ FP+
Sbjct: 454 QVKLGFPDW 462
|
Length = 484 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 5e-11
Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 8/174 (4%)
Query: 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 83
L QG ++ A +AL P +A+ LA + + G+L +A ++
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR 90
Query: 84 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIAFGNLASTYYERG 139
A+ L P D N G G ++A+ +++A++ P A + N + G
Sbjct: 91 ALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED-PLYPQPARSLENAGLCALKAG 149
Query: 140 QADMAILYYKQAIGCDPRFLEAYNNL---GNALKDVGRVDEAIQCYNQCLSLQP 190
D A Y +A+ DP+ E+ L ++ Y Q +
Sbjct: 150 DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTA 203
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 6e-11
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 124 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG-RVDEAIQCY 182
NA A NL + ++ G D AI Y++A+ DP EAY NL A +G +EA++
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 183 NQCLSLQP 190
+ L L P
Sbjct: 62 EKALELDP 69
|
Length = 69 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 2e-10
Identities = 53/267 (19%), Positives = 96/267 (35%), Gaps = 4/267 (1%)
Query: 68 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR--PNA 125
+++ A+ K A++ P +A LG +Y ALG A ++A+ N
Sbjct: 32 YLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQ 91
Query: 126 IAFGNLASTYYERGQADMAI-LYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 184
+ LA Y +G+ + + + D E G A +G+++ A + Y Q
Sbjct: 92 VLPL-LARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQ 150
Query: 185 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 244
L++ P A L + + N A + L G + GN
Sbjct: 151 ALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIE 210
Query: 245 DAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASA 304
A++ Y + + + P L+ E G +A + + P AH A
Sbjct: 211 LALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALV 270
Query: 305 YKDSGHVEAAIKSYKQALLLRPDFPEA 331
+ E A ++ + AL P++ A
Sbjct: 271 DFQKKNYEDARETLQDALKSAPEYLPA 297
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 3e-10
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 2/128 (1%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ--PTFA 58
+ G L +A R+AL LNP D +N G + QG ++A + +A+ P A
Sbjct: 76 QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPA 135
Query: 59 IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRA 118
+ N +++GD ++A +Y A+++ P P++ L L +Y G ++A +R
Sbjct: 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERY 195
Query: 119 VQTRPNAI 126
QT
Sbjct: 196 QQTYNQTA 203
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 4e-10
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 230 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG-RVTDAIQDYIRAI 288
NL + G+Y +AI Y + L +DP A+ N Y ++G +A++D +A+
Sbjct: 6 LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKAL 65
Query: 289 TIRP 292
+ P
Sbjct: 66 ELDP 69
|
Length = 69 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-09
Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 6/155 (3%)
Query: 130 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 189
LA Y E+G ++A +A+ DP AY L + +G +++A + + L+L
Sbjct: 36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN 95
Query: 190 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGL----SAPFNNLAVIYKQQGNYAD 245
P++ L N G + + + A+ L + N + + G++
Sbjct: 96 PNNGDVLNNYGTFLCQ--QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDK 153
Query: 246 AISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDA 280
A L+IDP + L+ Y G+ DA
Sbjct: 154 AEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-09
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAA 213
EA NLGNAL +G DEAI+ Y + L L P + +A NL Y++ A
Sbjct: 4 EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEA 57
|
Length = 69 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 3e-09
Identities = 48/214 (22%), Positives = 79/214 (36%), Gaps = 35/214 (16%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+ R A + + +P G+L Q A Y +AL+ P+ A
Sbjct: 680 LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA 739
Query: 61 ----------------------W-----------SNLAGLFMESGDLNRALQYYKEAVKL 87
W + LA L++ D ++A+++Y+ VK
Sbjct: 740 IKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKK 799
Query: 88 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGN-LASTYYERGQADMAIL 146
P NL +Y L P A+ +RA++ PN A + L E+G+AD A+
Sbjct: 800 APDNAVVLNNLAWLYLELKDP-RALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALP 858
Query: 147 YYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 180
++A+ P +L AL GR EA +
Sbjct: 859 LLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-09
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 55 PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD-------AYLNLGNVYKALGM 107
P A A +NLA + GD + AL+ ++A++L + A NL +Y ALG
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61
Query: 108 PQEAIMCYQRAVQTRPN 124
EA+ ++A+ R
Sbjct: 62 YDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 4e-09
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 25 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG-DLNRALQYYKE 83
+A NLGN + G EA Y +AL + P A A+ NLA +++ G D AL+ ++
Sbjct: 4 EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63
Query: 84 AVKLKP 89
A++L P
Sbjct: 64 ALELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 5e-09
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 261 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG-HVEAAIKSYK 319
A+ L N GN ++G +AI+ Y +A+ + P AEA+ NLA AY G E A++ +
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62
Query: 320 QALLLRP 326
+AL L P
Sbjct: 63 KALELDP 69
|
Length = 69 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 7e-09
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
Query: 49 EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP 108
+AL P++ +A A + + G+ + A + Y++A+ L P D N G A G P
Sbjct: 60 KALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119
Query: 109 QEAIMCYQRAVQTRPN----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNN 164
+EA+ ++RA+ P + NL + GQ D A Y K+A+ DP+F A
Sbjct: 120 EEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLE 178
Query: 165 LGNALKDVGRVDEA 178
L G A
Sbjct: 179 LARLHYKAGDYAPA 192
|
Length = 250 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-08
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 230 FNNLAVIYKQQGNYADAISCYNEVLRI-------DPLAADGLVNRGNTYKEIGRVTDAIQ 282
NNLA++ ++ G+Y +A+ + L + P A L N Y +G +A++
Sbjct: 8 LNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALE 67
Query: 283 DYIRAITIRP 292
+A+ +R
Sbjct: 68 YLEKALALRE 77
|
Length = 78 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-08
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 20 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ-------PTFAIAWSNLAGLFMESG 72
+P L A +NL +++ G EA +AL + P A A +NLA L++ G
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 73 DLNRALQYYKEAVKLKP 89
D + AL+Y ++A+ L+
Sbjct: 61 DYDEALEYLEKALALRE 77
|
Length = 78 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-08
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 92 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERG-QADMAILYYK 149
+A NLGN LG EAI Y++A++ P NA A+ NLA Y + G + A+ +
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62
Query: 150 QAIGCDP 156
+A+ DP
Sbjct: 63 KALELDP 69
|
Length = 69 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-08
Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 26/103 (25%)
Query: 89 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYY 148
P A NL V + LG EA+ ++A++
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALE--------------------------LA 35
Query: 149 KQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 191
++ P A NNL +G DEA++ + L+L+ +
Sbjct: 36 RELGEDHPETARALNNLARLYLALGDYDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 7e-08
Identities = 37/147 (25%), Positives = 52/147 (35%), Gaps = 8/147 (5%)
Query: 42 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 101
EA + QP + +E+ A++ K+A+ L P P LNL
Sbjct: 324 EALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA 383
Query: 102 YKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE 160
G PQEAI R + P + + LA Y E G A+L + R +
Sbjct: 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQ 443
Query: 161 AYNNLGNALKDVG-------RVDEAIQ 180
A L A + V R D I
Sbjct: 444 AIIFLMRASQQVKLGFPDWARADARID 470
|
Length = 484 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 9e-08
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 155 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ----PSHPQ---ALTNLGNIYMEWN 207
P A NNL L+ +G DEA++ + L L HP+ AL NL +Y+
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 208 MLPAAASYYKATLAV 222
A Y + LA+
Sbjct: 61 DYDEALEYLEKALAL 75
|
Length = 78 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 3/153 (1%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+ +G L A + +AL +P A+ L + G +++A + AL + P
Sbjct: 42 LEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDV 101
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVK--LKPTFPDAYLNLGNVYKALGMPQEAIMCYQRA 118
+N + G +A+Q +++A++ L P + N G G +A RA
Sbjct: 102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRA 161
Query: 119 VQTRPN-AIAFGNLASTYYERGQADMAILYYKQ 150
+Q P + LA YY RGQ A Y ++
Sbjct: 162 LQIDPQRPESLLELAELYYLRGQYKDARAYLER 194
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-07
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 17/151 (11%)
Query: 106 GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDP-------- 156
G +AI Q+AV+ P + A G L Y ++G A+ +++A+ DP
Sbjct: 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKW 342
Query: 157 -------RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 209
R+ ALK + +A + Y Q + + A+ LG++ M
Sbjct: 343 ESLLKVNRYWLLIQQGDAALK-ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDY 401
Query: 210 PAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 240
AA YY+ L + G + LA +Y+QQ
Sbjct: 402 AAAERYYQQALRMDPGNTNAVRGLANLYRQQ 432
|
Length = 1157 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-06
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 257 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR-------PTMAEAHANLASAYKDSG 309
P A L N + +G +A++ +A+ + P A A NLA Y G
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 310 HVEAAIKSYKQAL 322
+ A++ ++AL
Sbjct: 61 DYDEALEYLEKAL 73
|
Length = 78 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 1e-06
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 192
+A NLGNA +G+ DEA++ Y + L L P++
Sbjct: 2 KALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 47/216 (21%), Positives = 75/216 (34%), Gaps = 15/216 (6%)
Query: 132 ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 191
A +Y ++ + AI+ K A+ DP EA LG +G A + + LSL
Sbjct: 29 AKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYP 88
Query: 192 HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA-PFNNLAVI-------YKQQGNY 243
Q L L Y+ ++ L G + A + Y G
Sbjct: 89 KNQVLPLLARAYL-------LQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQL 141
Query: 244 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 303
A Y + L IDP + + R +A +T P +A
Sbjct: 142 ELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD 201
Query: 304 AYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 339
G++E A+ +Y++A+ LRP+ L L
Sbjct: 202 LLLSLGNIELALAAYRKAIALRPNNIAVLLALATIL 237
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF--- 57
+ G + A + R+AL+L P D +N G + AQG +EA + AL P +
Sbjct: 80 QKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEP 138
Query: 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGN 100
+ NL +++G ++A +Y K A++L P FP A L L
Sbjct: 139 SDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELAR 181
|
Length = 250 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 3e-06
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 92 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
A NLGN Y LG EA+ Y++A++ PN
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPN 33
|
Length = 34 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 192
EA NLGNA +G DEA++ Y + L L P++
Sbjct: 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 4e-06
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG-LVQEAYSCYLEALRIQP 55
+ G +EA + +AL L+P +A+ NL G +EA +AL + P
Sbjct: 14 FKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 5e-06
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 233 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 292
LA + G+Y +A++ L PLAA+ L+ G GR+ +A A+ P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 293 TMA 295
Sbjct: 63 DDP 65
|
Length = 65 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 6e-06
Identities = 55/243 (22%), Positives = 92/243 (37%), Gaps = 2/243 (0%)
Query: 92 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQ 150
P+ + Y + AI+ + A+Q PN A A L Y G A ++
Sbjct: 22 PEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRK 81
Query: 151 AIGCDPRFLEAYNNLGNALKDVGRVDEAI-QCYNQCLSLQPSHPQALTNLGNIYMEWNML 209
A+ + L A G+ + + + + L + L G Y+ L
Sbjct: 82 ALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQL 141
Query: 210 PAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGN 269
A Y+ LA+ LA + + + +A + +EVL DP D L+ +G+
Sbjct: 142 ELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD 201
Query: 270 TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 329
+G + A+ Y +AI +RP LA+ ++G E A K L P+ P
Sbjct: 202 LLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSP 261
Query: 330 EAT 332
A
Sbjct: 262 LAH 264
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 7e-06
Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 1/150 (0%)
Query: 48 LEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM 107
L A R + A A +G + AL+ + + +P P G++
Sbjct: 296 LLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK 355
Query: 108 PQEAIMCYQRAVQTRPNAIAFG-NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLG 166
+EAI ++A+ PN+ NLA + G+ AI + + DP ++ L
Sbjct: 356 AKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLA 415
Query: 167 NALKDVGRVDEAIQCYNQCLSLQPSHPQAL 196
A ++G EA+ + +L QA+
Sbjct: 416 QAYAELGNRAEALLARAEGYALAGRLEQAI 445
|
Length = 484 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 7e-06
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 230 FNNLAVIYKQQGNYADAISCYNEVLRIDP 258
NL Y + G+Y +A+ Y + L +DP
Sbjct: 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-06
Identities = 17/62 (27%), Positives = 26/62 (41%)
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
LA + +GD + AL + A+ P +A L LG G EA + A+ P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 124 NA 125
+
Sbjct: 63 DD 64
|
Length = 65 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 9e-06
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 230 FNNLAVIYKQQGNYADAISCYNEVLRIDP 258
NL Y + G Y +A+ Y + L ++P
Sbjct: 4 LYNLGNAYLKLGKYDEALEYYEKALELNP 32
|
Length = 34 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 1e-05
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 92 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
+A NLGN Y LG EA+ Y++A++ PN
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-05
Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 1/124 (0%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
GR EA C + + L L + + +A Y + L+ P
Sbjct: 64 SWAGRDKEAIDVCERY-SPVGLPARVLEALAKAYRNEKQWDKALELYRKLLQRDPNNPDG 122
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
LA ++G AL+Y KE V PT Y L V +A +A+ +Q+A+
Sbjct: 123 LLGLALTLADAGKDAEALKYLKEYVARFPTDAARYEALAYVLRAAEDHLDALQAWQQALT 182
Query: 121 TRPN 124
P+
Sbjct: 183 LEPD 186
|
Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 34/109 (31%), Positives = 48/109 (44%)
Query: 138 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALT 197
G A+ ++A P EA+N LG AL +GR DEA + Y Q L L P+ P
Sbjct: 113 NGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIAN 172
Query: 198 NLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADA 246
NLG + L A + S NLA++ QG++ +A
Sbjct: 173 NLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221
|
Length = 257 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 35/152 (23%), Positives = 58/152 (38%), Gaps = 3/152 (1%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+++G +A + +AL +P AH + + G A Y +AL + P
Sbjct: 46 LQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDV 105
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLK--PTFPDAYLNLGNVYKALGMPQEAIMCYQRA 118
+N G A+Q ++ A+ D NLG G +A +RA
Sbjct: 106 LNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA 165
Query: 119 VQTRPN-AIAFGNLASTYYERGQADMAILYYK 149
++ P A LA +Y+ G A LY +
Sbjct: 166 LELDPQFPPALLELARLHYKAGDYAPARLYLE 197
|
Length = 250 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 16/63 (25%), Positives = 20/63 (31%)
Query: 30 LGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP 89
L G EA + AL P A A L + G L A + A+ P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 90 TFP 92
P
Sbjct: 63 DDP 65
|
Length = 65 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 2e-05
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 147 YYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 180
Y++A+ DP EAY NL L ++G+ DEA+Q
Sbjct: 1 LYEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
|
Length = 34 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 3e-05
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 80 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAI 112
Y++A++L P +AY NL + LG EA+
Sbjct: 1 LYEKALELDPNNAEAYYNLALLLLNLGQYDEAL 33
|
Length = 34 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 35/147 (23%), Positives = 55/147 (37%), Gaps = 2/147 (1%)
Query: 194 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV 253
+ L Y+E L A L + LA+ Y+Q G A +
Sbjct: 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRA 91
Query: 254 LRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT--IRPTMAEAHANLASAYKDSGHV 311
L ++P D L N G + G+ A+Q + +AI + P A + N +G
Sbjct: 92 LTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDF 151
Query: 312 EAAIKSYKQALLLRPDFPEATCNLLHT 338
+ A K +AL + P PE+ L
Sbjct: 152 DKAEKYLTRALQIDPQRPESLLELAEL 178
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 9e-05
Identities = 20/63 (31%), Positives = 25/63 (39%)
Query: 131 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 190
LA G D A+ + A+ P EA LG AL GR+ EA L+ P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 191 SHP 193
P
Sbjct: 63 DDP 65
|
Length = 65 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 1e-04
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 194 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGL-------SAPFNNLAVIYKQQGNYADA 246
AL NL + A + L + L + NNLA +Y G+Y +A
Sbjct: 6 AALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEA 65
Query: 247 ISCYNEVLRIDP 258
+ + L +
Sbjct: 66 LEYLEKALALRE 77
|
Length = 78 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 1e-04
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 159 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 192
AY LG +G +EA + Y + L L P++
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
|
Length = 34 |
| >gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 16/57 (28%), Positives = 34/57 (59%)
Query: 242 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 298
++A A+ Y + + +DP A+ +R ++G T+A+ D +AI + P++A+A+
Sbjct: 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAY 73
|
Length = 356 |
| >gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 35/151 (23%)
Query: 34 MKAQ--GLVQEAYSCYLEALRIQPTFAIAWS----NLAGLFMESGDLNRALQYYKEAVKL 87
M AQ G EA Y EAL+++ S N+ ++ +G+ ++AL+YY +A++L
Sbjct: 43 MSAQADGEYAEALENYEEALKLEED-PNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101
Query: 88 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNL--ASTYYERGQADMAI 145
P P A N+ +Y G ++A + G+ A + D A
Sbjct: 102 NPKQPSALNNIAVIYHKRG---------EKAEEA-------GDQDEAEALF-----DKAA 140
Query: 146 LYYKQAIGCDP-RFLEAYNNLGNALKDVGRV 175
Y+KQAI P ++EA N LK GR
Sbjct: 141 EYWKQAIRLAPNNYIEAQ----NWLKTTGRS 167
|
Length = 172 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 192
EA NLG A +G +EA++ Y + L L P++
Sbjct: 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 77/380 (20%), Positives = 138/380 (36%), Gaps = 67/380 (17%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ------------------- 41
++G A +ALAL D HS+ N K + L++
Sbjct: 314 SQQGDRARAVAQFEKALAL-----DPHSS--NRDKWESLLKVNRYWLLIQQGDAALKANN 366
Query: 42 --EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLG 99
+A Y +A ++ T + A L + M D A +YY++A+++ P +A L
Sbjct: 367 LAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426
Query: 100 NVYKALGMPQEAIMCY--------QRAVQTRPNAIAFGNL---ASTYYERGQADMAILYY 148
N+Y+ P++A + + +R++ ++ L A +G+ A
Sbjct: 427 NLYRQQS-PEKA-LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQ 484
Query: 149 KQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNM 208
+Q + DP + L L+ G+ +A + +P+ P+ + G +Y+ +
Sbjct: 485 RQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYG-LYLSGSD 543
Query: 209 LPAAASYYKATLAVT------TGLSAPFNNLAVI-----YKQQGNYADAISCYNE---VL 254
AA + TL L+ + V+ + G A+A + +
Sbjct: 544 RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPST 603
Query: 255 RIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAA 314
RID AD RG+ A Y R +T P A+A L G + AA
Sbjct: 604 RIDLTLADWAQQRGDY-------AAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAA 656
Query: 315 IKSYKQALLLRPDFPEATCN 334
+ L P + N
Sbjct: 657 ----RAQLAKLPATANDSLN 672
|
Length = 1157 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 91
A A NL +++ G + AL+YY++A++L P
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 295 AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 328
A+A NL +AY G + A++ Y++AL L P+
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|176974 CHL00033, ycf3, photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 29/140 (20%)
Query: 34 MKAQ--GLVQEAYSCYLEALRIQP---TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 88
M AQ G EA Y EA+R++ + N+ + +G+ +AL+YY +A++
Sbjct: 43 MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN 102
Query: 89 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQA--DMAIL 146
P P A N+ A++C+ R Q AI G+ E +A D A
Sbjct: 103 PFLPQALNNM------------AVICHYRGEQ----AIEQGD-----SEIAEAWFDQAAE 141
Query: 147 YYKQAIGCDP-RFLEAYNNL 165
Y+KQAI P ++EA N L
Sbjct: 142 YWKQAIALAPGNYIEAQNWL 161
|
Length = 168 |
| >gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-04
Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 7/124 (5%)
Query: 138 RGQADMAILYYKQAIGCDPRFLEAY--NNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQA 195
G+ AI ++ P L A L A ++ + D+A++ Y + L P++P
Sbjct: 66 AGRDKEAIDVCER---YSPVGLPARVLEALAKAYRNEKQWDKALELYRKLLQRDPNNPDG 122
Query: 196 LTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFN-NLAVIYKQQGNYADAISCYNEVL 254
L L + A Y K A LA + + ++ DA+ + + L
Sbjct: 123 LLGLALTLADAGKDAEALKYLKE-YVARFPTDAARYEALAYVLRAAEDHLDALQAWQQAL 181
Query: 255 RIDP 258
++P
Sbjct: 182 TLEP 185
|
Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 231 NNLAVIYKQQGNYADAISCYNEVLRIDP 258
NL + Y + G+Y +A+ Y + L +DP
Sbjct: 5 YNLGLAYYKLGDYEEALEAYEKALELDP 32
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 3e-04
Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 3/130 (2%)
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
LA + GDL+ A K+A+ P A + LG++ A G AI +R + P
Sbjct: 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245
Query: 124 NAI--AFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 181
+ L Y G + + ++A+ P + L L++ + A
Sbjct: 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP-GADLLLALAQLLEEQEGPEAAQAL 304
Query: 182 YNQCLSLQPS 191
+ L PS
Sbjct: 305 LREQLRRHPS 314
|
Length = 389 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 4e-04
Identities = 16/63 (25%), Positives = 21/63 (33%)
Query: 267 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 326
G +A+ A+ P AEA L A G + A + AL P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 327 DFP 329
D P
Sbjct: 63 DDP 65
|
Length = 65 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 5e-04
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 295 AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
AEA NL +A G + AI++Y++AL L PD EA NL
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNL 43
|
Length = 69 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 7e-04
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 1 MRKGRLNEAAQCCRQALAL-------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 53
R G +EA + +AL L +P A +NL L A G EA +AL +
Sbjct: 16 RRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALEYLEKALAL 75
Query: 54 QP 55
+
Sbjct: 76 RE 77
|
Length = 78 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 8e-04
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 91
A A NL +++ GD + AL+YY++A++L P
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 8e-04
Identities = 56/277 (20%), Positives = 94/277 (33%), Gaps = 22/277 (7%)
Query: 72 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGN 130
G A+ + L Y+ +A+ Y++ +Q P N
Sbjct: 67 GRDKEAIDVCERY-SPVGLPARVLEALAKAYRNEKQWDKALELYRKLLQRDPNNPDGLLG 125
Query: 131 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 190
LA T + G+ A+ Y K+ + P Y L L+ +A+Q + Q L+L+P
Sbjct: 126 LALTLADAGKDAEALKYLKEYVARFPTDAARYEALAYVLRAAEDHLDALQAWQQALTLEP 185
Query: 191 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG---------LSAPFNNLAVIYKQQG 241
+P+A L I PAAA K + T +A L +
Sbjct: 186 DNPEAALELYRILTRLGAPPAAARLAKQYPDLFTPEDQRWLEHDQAAELVRLGENPSRSE 245
Query: 242 N----YAD-AISCYNEVL-RIDPLAAD----GLVNRGNTYKEIGRVTDAIQDYIRAITIR 291
AD A++ +L + P A ++R R + I++Y
Sbjct: 246 KERFAIADRALADLQALLDKWGPQANPLYRRARIDRLGALLVRKRYAEVIREYESLEAEG 305
Query: 292 PTMAE-AHANLASAYKDSGHVEAAIKSYKQALLLRPD 327
+ A +A AY E A+ Y++ P
Sbjct: 306 QPLPPYAQEAVADAYLALRQPEKALPIYRELAAAEPA 342
|
Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 9e-04
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 55
+R G +EA ALA PL +A LG + QG + EA + AL P
Sbjct: 8 LRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
|
Length = 65 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 295 AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 328
AEA NL +AY G + A++ Y++AL L P+
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 27/124 (21%), Positives = 47/124 (37%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G + + +++ P + + G G EA S +A R+ PT AW+
Sbjct: 80 GDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
L + G + A + Y++A++L P P NLG G ++A A +
Sbjct: 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199
Query: 124 NAIA 127
Sbjct: 200 ADSR 203
|
Length = 257 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 6/140 (4%)
Query: 202 IYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ------QGNYADAISCYNEVLR 255
I L + + A + ++ Q GN+ +A+S + R
Sbjct: 69 IAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128
Query: 256 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 315
+ P + G ++GR +A + Y +A+ + P NL + G +E A
Sbjct: 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAE 188
Query: 316 KSYKQALLLRPDFPEATCNL 335
A L NL
Sbjct: 189 TLLLPAYLSPAADSRVRQNL 208
|
Length = 257 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 92 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
AY LG +Y LG +EA Y++A++ PN
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPN 33
|
Length = 34 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 295 AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 328
A A+ L Y G E A + Y++AL L P+
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
|
Length = 34 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 261 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 293
A L N GN Y ++G+ +A++ Y +A+ + P
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPN 33
|
Length = 34 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 231 NNLAVIYKQQGNYADAISCYNEVLRIDP 258
L IY Q G+Y +A Y + L +DP
Sbjct: 5 YLLGQIYLQLGDYEEAKEYYEKALELDP 32
|
Length = 34 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 295 AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 328
AEA NL AY G E A+++Y++AL L P+
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.003
Identities = 18/57 (31%), Positives = 24/57 (42%)
Query: 165 LGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 221
L A G DEA+ L+ P +AL LG + L AA+ +A LA
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALA 59
|
Length = 65 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 37/131 (28%), Positives = 48/131 (36%), Gaps = 3/131 (2%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 61
R G EA R+A L P +A + LG + G EA Y +AL + P
Sbjct: 112 RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIA 171
Query: 62 SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 121
+NL + GDL A A NL V G +EA AVQ
Sbjct: 172 NNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA---EDIAVQE 228
Query: 122 RPNAIAFGNLA 132
+ A N+A
Sbjct: 229 LLSEQAANNVA 239
|
Length = 257 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.3 bits (82), Expect = 0.003
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 46 CYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ 79
Y +AL + P A A+ NLA L + G + ALQ
Sbjct: 1 LYEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
|
Length = 34 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.003
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 91
A A NL + + GD AL+ Y++A++L P
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.004
Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 35/153 (22%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+ +G L+ A ++ALA +P V A +++
Sbjct: 191 LARGDLDAARALLKKALAADPQCVRA-----SILLGD----------------------- 222
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTF-PDAYLNLGNVYKALGMPQEAIMCYQRAV 119
L + GD A++ + + P + + L Y+ALG E + +RA+
Sbjct: 223 ------LALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276
Query: 120 QTRPNAIAFGNLASTYYERGQADMAILYYKQAI 152
+ P A LA E+ + A ++ +
Sbjct: 277 EEYPGADLLLALAQLLEEQEGPEAAQALLREQL 309
|
Length = 389 |
| >gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.004
Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 7/85 (8%)
Query: 47 YLEALRI-------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLG 99
Y EAL++ P + W LA + A+ Y A L P P Y +
Sbjct: 33 YDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAA 92
Query: 100 NVYKALGMPQEAIMCYQRAVQTRPN 124
ALG P+ A+ A++
Sbjct: 93 ECLLALGEPESALKALDLAIEICGE 117
|
Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 811 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 100.0 | |
| PF13844 | 468 | Glyco_transf_41: Glycosyl transferase family 41; P | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.98 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.98 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.97 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.97 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.95 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.95 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.94 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.94 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.94 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.94 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.94 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.94 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.93 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.93 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.93 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.92 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.92 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.91 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.91 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.91 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.91 | |
| PRK15490 | 578 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.9 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.9 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.89 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.89 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.89 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.89 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.89 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.88 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.88 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.88 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.88 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.88 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.87 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.87 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.86 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.86 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.86 | |
| TIGR03088 | 374 | stp2 sugar transferase, PEP-CTERM/EpsH1 system ass | 99.86 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.86 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.85 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.85 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.84 | |
| PRK15427 | 406 | colanic acid biosynthesis glycosyltransferase WcaL | 99.84 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.83 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.83 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.83 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.82 | |
| cd03792 | 372 | GT1_Trehalose_phosphorylase Trehalose phosphorylas | 99.82 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.81 | |
| cd03796 | 398 | GT1_PIG-A_like This family is most closely related | 99.81 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.81 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.8 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.8 | |
| PLN02871 | 465 | UDP-sulfoquinovose:DAG sulfoquinovosyltransferase | 99.8 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.8 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.79 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.79 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.79 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.79 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.78 | |
| cd03812 | 358 | GT1_CapH_like This family is most closely related | 99.78 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.78 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.77 | |
| cd03807 | 365 | GT1_WbnK_like This family is most closely related | 99.77 | |
| cd03822 | 366 | GT1_ecORF704_like This family is most closely rela | 99.77 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.76 | |
| cd03805 | 392 | GT1_ALG2_like This family is most closely related | 99.76 | |
| TIGR03449 | 405 | mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino | 99.76 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.76 | |
| PLN02949 | 463 | transferase, transferring glycosyl groups | 99.76 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.76 | |
| cd04962 | 371 | GT1_like_5 This family is most closely related to | 99.76 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.75 | |
| PRK15484 | 380 | lipopolysaccharide 1,2-N-acetylglucosaminetransfer | 99.75 | |
| cd04951 | 360 | GT1_WbdM_like This family is most closely related | 99.75 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.75 | |
| PLN02939 | 977 | transferase, transferring glycosyl groups | 99.74 | |
| PRK09922 | 359 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D | 99.74 | |
| cd03820 | 348 | GT1_amsD_like This family is most closely related | 99.74 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.74 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.74 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.74 | |
| PLN02846 | 462 | digalactosyldiacylglycerol synthase | 99.73 | |
| cd03818 | 396 | GT1_ExpC_like This family is most closely related | 99.73 | |
| PRK10307 | 412 | putative glycosyl transferase; Provisional | 99.73 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.73 | |
| cd03801 | 374 | GT1_YqgM_like This family is most closely related | 99.73 | |
| cd03821 | 375 | GT1_Bme6_like This family is most closely related | 99.71 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.71 | |
| TIGR02472 | 439 | sucr_P_syn_N sucrose-phosphate synthase, putative, | 99.71 | |
| cd05844 | 367 | GT1_like_7 Glycosyltransferases catalyze the trans | 99.71 | |
| PLN02316 | 1036 | synthase/transferase | 99.69 | |
| TIGR02149 | 388 | glgA_Coryne glycogen synthase, Corynebacterium fam | 99.69 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.69 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.69 | |
| cd03817 | 374 | GT1_UGDG_like This family is most closely related | 99.68 | |
| cd03799 | 355 | GT1_amsK_like This is a family of GT1 glycosyltran | 99.68 | |
| cd03825 | 365 | GT1_wcfI_like This family is most closely related | 99.68 | |
| cd03819 | 355 | GT1_WavL_like This family is most closely related | 99.67 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.67 | |
| cd03800 | 398 | GT1_Sucrose_synthase This family is most closely r | 99.67 | |
| PLN02501 | 794 | digalactosyldiacylglycerol synthase | 99.67 | |
| cd04955 | 363 | GT1_like_6 This family is most closely related to | 99.67 | |
| cd03806 | 419 | GT1_ALG11_like This family is most closely related | 99.66 | |
| cd03809 | 365 | GT1_mtfB_like This family is most closely related | 99.66 | |
| TIGR02468 | 1050 | sucrsPsyn_pln sucrose phosphate synthase/possible | 99.65 | |
| cd03802 | 335 | GT1_AviGT4_like This family is most closely relate | 99.65 | |
| cd03811 | 353 | GT1_WabH_like This family is most closely related | 99.65 | |
| PRK14099 | 485 | glycogen synthase; Provisional | 99.64 | |
| TIGR02470 | 784 | sucr_synth sucrose synthase. This model represents | 99.63 | |
| cd03816 | 415 | GT1_ALG1_like This family is most closely related | 99.63 | |
| TIGR03087 | 397 | stp1 sugar transferase, PEP-CTERM/EpsH1 system ass | 99.63 | |
| PRK00654 | 466 | glgA glycogen synthase; Provisional | 99.63 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.63 | |
| cd03814 | 364 | GT1_like_2 This family is most closely related to | 99.63 | |
| cd03798 | 377 | GT1_wlbH_like This family is most closely related | 99.62 | |
| cd03795 | 357 | GT1_like_4 This family is most closely related to | 99.62 | |
| TIGR02095 | 473 | glgA glycogen/starch synthases, ADP-glucose type. | 99.62 | |
| cd03808 | 359 | GT1_cap1E_like This family is most closely related | 99.61 | |
| cd03813 | 475 | GT1_like_3 This family is most closely related to | 99.6 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.59 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.59 | |
| cd03823 | 359 | GT1_ExpE7_like This family is most closely related | 99.59 | |
| PRK10125 | 405 | putative glycosyl transferase; Provisional | 99.59 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.58 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.58 | |
| TIGR02918 | 500 | accessory Sec system glycosylation protein GtfA. M | 99.58 | |
| KOG1111 | 426 | consensus N-acetylglucosaminyltransferase complex, | 99.58 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.57 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.57 | |
| PRK05749 | 425 | 3-deoxy-D-manno-octulosonic-acid transferase; Revi | 99.56 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.56 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.55 | |
| cd04949 | 372 | GT1_gtfA_like This family is most closely related | 99.55 | |
| PRK14098 | 489 | glycogen synthase; Provisional | 99.54 | |
| PLN00142 | 815 | sucrose synthase | 99.54 | |
| cd03794 | 394 | GT1_wbuB_like This family is most closely related | 99.53 | |
| cd04946 | 407 | GT1_AmsK_like This family is most closely related | 99.53 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.53 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.53 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.51 | |
| PF00534 | 172 | Glycos_transf_1: Glycosyl transferases group 1; In | 99.49 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.49 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.49 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.49 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.47 | |
| cd03804 | 351 | GT1_wbaZ_like This family is most closely related | 99.47 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.47 | |
| PHA01633 | 335 | putative glycosyl transferase group 1 | 99.47 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.46 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.45 | |
| PRK13609 | 380 | diacylglycerol glucosyltransferase; Provisional | 99.45 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.44 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.44 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.43 | |
| PLN02605 | 382 | monogalactosyldiacylglycerol synthase | 99.43 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.43 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.43 | |
| PRK00726 | 357 | murG undecaprenyldiphospho-muramoylpentapeptide be | 99.43 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.43 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.41 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.41 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.4 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.4 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.39 | |
| PLN02275 | 371 | transferase, transferring glycosyl groups | 99.39 | |
| PHA01630 | 331 | putative group 1 glycosyl transferase | 99.38 | |
| cd03791 | 476 | GT1_Glycogen_synthase_DULL1_like This family is mo | 99.37 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.37 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.36 | |
| TIGR00236 | 365 | wecB UDP-N-acetylglucosamine 2-epimerase. Epimeras | 99.36 | |
| cd03785 | 350 | GT1_MurG MurG is an N-acetylglucosaminyltransferas | 99.36 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.33 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.32 | |
| PRK13608 | 391 | diacylglycerol glucosyltransferase; Provisional | 99.31 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.3 | |
| TIGR01133 | 348 | murG undecaprenyldiphospho-muramoylpentapeptide be | 99.29 | |
| cd03786 | 363 | GT1_UDP-GlcNAc_2-Epimerase Bacterial members of th | 99.27 | |
| cd03788 | 460 | GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a | 99.23 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.23 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.2 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.2 | |
| TIGR02400 | 456 | trehalose_OtsA alpha,alpha-trehalose-phosphate syn | 99.19 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.19 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.18 | |
| PRK00025 | 380 | lpxB lipid-A-disaccharide synthase; Reviewed | 99.1 | |
| PF13692 | 135 | Glyco_trans_1_4: Glycosyl transferases group 1; PD | 99.09 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.09 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.09 | |
| cd01635 | 229 | Glycosyltransferase_GTB_type Glycosyltransferases | 99.08 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.07 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.06 | |
| TIGR00215 | 385 | lpxB lipid-A-disaccharide synthase. Lipid-A precur | 99.06 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.05 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.04 | |
| KOG0853 | 495 | consensus Glycosyltransferase [Cell wall/membrane/ | 99.04 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.04 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 99.03 | |
| PLN03063 | 797 | alpha,alpha-trehalose-phosphate synthase (UDP-form | 99.01 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.01 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.98 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.97 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.97 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.96 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.96 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.96 | |
| PRK14501 | 726 | putative bifunctional trehalose-6-phosphate syntha | 98.96 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.95 | |
| cd03793 | 590 | GT1_Glycogen_synthase_GSY2_like Glycogen synthase, | 98.93 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.9 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.9 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.9 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.89 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.89 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.88 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.88 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.88 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.87 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.86 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.86 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.85 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.85 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.85 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.83 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.83 | |
| cd04950 | 373 | GT1_like_1 Glycosyltransferases catalyze the trans | 98.81 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.81 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.81 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.8 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.8 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.8 | |
| COG0438 | 381 | RfaG Glycosyltransferase [Cell envelope biogenesis | 98.79 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.79 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.79 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.78 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.78 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.76 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.76 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.76 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.75 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.75 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.75 | |
| TIGR03713 | 519 | acc_sec_asp1 accessory Sec system protein Asp1. Th | 98.75 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.74 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.74 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.71 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.7 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.69 | |
| KOG1387 | 465 | consensus Glycosyltransferase [Cell wall/membrane/ | 98.68 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.64 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.64 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.64 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.63 | |
| TIGR02398 | 487 | gluc_glyc_Psyn glucosylglycerol-phosphate synthase | 98.61 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.59 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.58 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.56 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.53 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.52 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.5 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.48 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.46 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.46 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.45 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.44 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.41 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.4 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.36 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.36 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.35 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.34 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.34 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.34 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.33 | |
| COG0297 | 487 | GlgA Glycogen synthase [Carbohydrate transport and | 98.32 | |
| TIGR03492 | 396 | conserved hypothetical protein. This protein famil | 98.31 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.31 | |
| cd03784 | 401 | GT1_Gtf_like This family includes the Gtfs, a grou | 98.3 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.3 | |
| PLN03064 | 934 | alpha,alpha-trehalose-phosphate synthase (UDP-form | 98.29 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.28 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.28 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.26 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.26 | |
| TIGR02919 | 438 | accessory Sec system glycosyltransferase GtfB. Mem | 98.26 | |
| COG1819 | 406 | Glycosyl transferases, related to UDP-glucuronosyl | 98.25 | |
| TIGR01426 | 392 | MGT glycosyltransferase, MGT family. This model de | 98.22 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.21 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.21 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.21 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.17 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.17 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.15 | |
| TIGR03590 | 279 | PseG pseudaminic acid biosynthesis-associated prot | 98.15 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.13 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.12 | |
| COG1519 | 419 | KdtA 3-deoxy-D-manno-octulosonic-acid transferase | 98.11 | |
| PF13524 | 92 | Glyco_trans_1_2: Glycosyl transferases group 1 | 98.1 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.1 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.09 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.08 | |
| COG0707 | 357 | MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami | 98.06 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.06 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 98.06 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.05 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.04 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 98.04 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 98.04 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.02 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.02 | |
| TIGR03568 | 365 | NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, | 98.01 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.0 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.99 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.97 | |
| PF13528 | 318 | Glyco_trans_1_3: Glycosyl transferase family 1 | 97.95 | |
| COG0763 | 381 | LpxB Lipid A disaccharide synthetase [Cell envelop | 97.95 | |
| PRK09814 | 333 | beta-1,6-galactofuranosyltransferase; Provisional | 97.95 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.92 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.91 | |
| PLN02670 | 472 | transferase, transferring glycosyl groups | 97.9 | |
| PF02684 | 373 | LpxB: Lipid-A-disaccharide synthetase; InterPro: I | 97.88 | |
| PRK12446 | 352 | undecaprenyldiphospho-muramoylpentapeptide beta-N- | 97.84 | |
| PLN02992 | 481 | coniferyl-alcohol glucosyltransferase | 97.82 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.8 | |
| PLN03004 | 451 | UDP-glycosyltransferase | 97.8 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.79 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.78 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.77 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.77 | |
| PLN02410 | 451 | UDP-glucoronosyl/UDP-glucosyl transferase family p | 97.76 | |
| PHA03392 | 507 | egt ecdysteroid UDP-glucosyltransferase; Provision | 97.75 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.75 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.74 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.73 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.7 | |
| PRK01021 | 608 | lpxB lipid-A-disaccharide synthase; Reviewed | 97.69 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.68 | |
| PF04007 | 335 | DUF354: Protein of unknown function (DUF354); Inte | 97.68 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.66 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.65 | |
| TIGR02094 | 601 | more_P_ylases alpha-glucan phosphorylases. This fa | 97.65 | |
| PLN02863 | 477 | UDP-glucoronosyl/UDP-glucosyl transferase family p | 97.63 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.63 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.63 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.62 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 97.59 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.59 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.57 | |
| PLN02554 | 481 | UDP-glycosyltransferase family protein | 97.56 | |
| PLN02764 | 453 | glycosyltransferase family protein | 97.55 | |
| PLN00414 | 446 | glycosyltransferase family protein | 97.54 | |
| PLN02167 | 475 | UDP-glycosyltransferase family protein | 97.53 | |
| PLN00164 | 480 | glucosyltransferase; Provisional | 97.53 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.5 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.5 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.49 | |
| PLN02562 | 448 | UDP-glycosyltransferase | 97.48 | |
| PLN02448 | 459 | UDP-glycosyltransferase family protein | 97.48 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.47 | |
| PLN02207 | 468 | UDP-glycosyltransferase | 97.47 | |
| PLN03007 | 482 | UDP-glucosyltransferase family protein | 97.45 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.44 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.44 | |
| PLN02210 | 456 | UDP-glucosyl transferase | 97.43 | |
| PF00201 | 500 | UDPGT: UDP-glucoronosyl and UDP-glucosyl transfera | 97.42 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.42 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.42 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.41 | |
| PLN02208 | 442 | glycosyltransferase family protein | 97.4 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.4 | |
| PLN02173 | 449 | UDP-glucosyl transferase family protein | 97.39 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.39 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.39 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.38 | |
| PLN02152 | 455 | indole-3-acetate beta-glucosyltransferase | 97.36 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.36 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.33 | |
| PLN03015 | 470 | UDP-glucosyl transferase | 97.3 | |
| COG0381 | 383 | WecB UDP-N-acetylglucosamine 2-epimerase [Cell env | 97.28 | |
| PLN02555 | 480 | limonoid glucosyltransferase | 97.28 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.25 | |
| PF02350 | 346 | Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; | 97.25 | |
| PLN02534 | 491 | UDP-glycosyltransferase | 97.24 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.23 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.2 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.19 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.16 | |
| cd04299 | 778 | GT1_Glycogen_Phosphorylase_like This family is mos | 97.14 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.08 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.06 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.01 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.0 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.0 | |
| PF05693 | 633 | Glycogen_syn: Glycogen synthase; InterPro: IPR0086 | 96.95 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.95 | |
| KOG2941 | 444 | consensus Beta-1,4-mannosyltransferase [Posttransl | 96.94 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 96.93 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.92 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.85 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.81 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.81 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.78 | |
| PF01075 | 247 | Glyco_transf_9: Glycosyltransferase family 9 (hept | 96.77 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 96.74 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.73 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.73 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.72 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.67 | |
| PF06258 | 311 | Mito_fiss_Elm1: Mitochondrial fission ELM1; InterP | 96.66 | |
| COG1817 | 346 | Uncharacterized protein conserved in archaea [Func | 96.66 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.61 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.57 | |
| TIGR00661 | 321 | MJ1255 conserved hypothetical protein. This model | 96.56 | |
| TIGR02201 | 344 | heptsyl_trn_III lipopolysaccharide heptosyltransfe | 96.52 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.38 | |
| PRK10422 | 352 | lipopolysaccharide core biosynthesis protein; Prov | 96.35 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.34 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.24 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 96.21 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.15 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.11 | |
| TIGR02195 | 334 | heptsyl_trn_II lipopolysaccharide heptosyltransfer | 96.11 | |
| cd03789 | 279 | GT1_LPS_heptosyltransferase Lipopolysaccharide hep | 96.09 | |
| PRK10916 | 348 | ADP-heptose:LPS heptosyltransferase II; Provisiona | 95.84 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.82 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.81 | |
| COG3980 | 318 | spsG Spore coat polysaccharide biosynthesis protei | 95.75 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 95.71 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 95.67 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.65 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.62 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.49 | |
| KOG1192 | 496 | consensus UDP-glucuronosyl and UDP-glucosyl transf | 95.49 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 95.44 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 95.44 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.43 | |
| PRK02797 | 322 | 4-alpha-L-fucosyltransferase; Provisional | 95.35 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 95.33 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.16 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.1 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 95.08 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 95.07 | |
| PRK10117 | 474 | trehalose-6-phosphate synthase; Provisional | 95.02 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.96 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 94.92 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.92 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 94.91 | |
| PF00982 | 474 | Glyco_transf_20: Glycosyltransferase family 20; In | 94.89 | |
| PF07429 | 360 | Glyco_transf_56: 4-alpha-L-fucosyltransferase glyc | 94.86 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.82 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 94.79 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 94.79 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.78 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.77 | |
| TIGR02193 | 319 | heptsyl_trn_I lipopolysaccharide heptosyltransfera | 94.75 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.75 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 94.74 | |
| PRK14089 | 347 | ipid-A-disaccharide synthase; Provisional | 94.73 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 94.64 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 94.6 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 94.56 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 94.56 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 94.49 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.11 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 94.02 | |
| PF04101 | 167 | Glyco_tran_28_C: Glycosyltransferase family 28 C-t | 93.97 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 93.92 | |
| PRK10017 | 426 | colanic acid biosynthesis protein; Provisional | 93.92 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 93.85 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 93.77 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 93.73 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 93.71 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 93.7 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.69 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 93.56 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.54 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 93.49 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.41 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.4 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 93.38 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.36 | |
| PF05159 | 269 | Capsule_synth: Capsule polysaccharide biosynthesis | 93.23 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 93.16 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-149 Score=1139.99 Aligned_cols=803 Identities=55% Similarity=0.930 Sum_probs=761.7
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----------------------------------CHHHHHHHHH
Q 003557 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG----------------------------------LVQEAYSCYL 48 (811)
Q Consensus 3 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g----------------------------------~~~~A~~~~~ 48 (811)
.|++++|+..|+.+++..|+..++|..+|.++...| +..+|..+|.
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 456666666666666666666666666665555554 4555555555
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhH
Q 003557 49 EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIA 127 (811)
Q Consensus 49 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 127 (811)
++++.+|..+.+|.+||.++..+|+...|+..|+++++++|+..++|.+||.+|...+.+++|+.+|.+++...|+ +.+
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a 288 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVA 288 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhh
Confidence 5555555556778888888999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Q 003557 128 FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 207 (811)
Q Consensus 128 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 207 (811)
+.+++.+|+++|..+-|+..|+++++..|+.+++|.++|.++...|+..+|..+|.+++.+.|+.+++.++||.+|.++|
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~ 368 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQG 368 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003557 208 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRA 287 (811)
Q Consensus 208 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 287 (811)
++++|..+|+++++..|....++++||.+|.++|++++|+.+|++++.+.|..++++.++|..|..+|+.+.|+++|.++
T Consensus 369 ~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 369 KIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred cchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHHHHHhcccC
Q 003557 288 ITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSV 367 (811)
Q Consensus 288 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l~~~~~~~~~ 367 (811)
+..+|..++++.+||.+|...|+..+|+..|++++++.|+.++++.|++.++...++|.+..+.+++..++.++.+++..
T Consensus 449 I~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~r 528 (966)
T KOG4626|consen 449 IQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNR 528 (966)
T ss_pred HhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCCCCHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCCCCcccCCCCccceEeeecCCCCCChhHhhHHHH
Q 003557 368 LPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSV 447 (811)
Q Consensus 368 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrvg~~s~~~~~h~~~~~l~~l 447 (811)
.|+++|++.++|++++....+++++++.+|-.....++.||+.||...+. +.+|+||||||+||++||+++++.++
T Consensus 529 lpsvhP~hsm~ypl~~~~~~aia~k~a~~c~~~~~~~~k~pyth~~~l~~----~~~rlrIGYvSsDFgnHp~Shlmqsv 604 (966)
T KOG4626|consen 529 LPSVHPHHSMLYPLSHILRKAIAAKHANLCLDKVHVLGKPPYTHPDNLKV----KEGRLRIGYVSSDFGNHPTSHLMQSV 604 (966)
T ss_pred CCccCcccccccccchHHHHHHHHHHhhhhHHHHHhccCCCCCChhhCCC----CcCceEEEeecccccCCchHHHhccC
Confidence 99999999999999999999999999999998888899999999876654 45899999999999999999999999
Q ss_pred hcccCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCCHHHHHHHHHhCCCeEEEeCCCCCCCcchhhhhcCCCce
Q 003557 448 FGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPI 527 (811)
Q Consensus 448 ~~~~d~~~~ev~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dilv~~~~~~~~~~~~~~~~r~Apv 527 (811)
+.+|||++|||+||+.++.++..++.++...++||+++.+++...+|+.|++|+|||||.+.|||.|+|..+|++|||||
T Consensus 605 ~gmHdr~kveVfcYals~~d~t~fR~kv~~e~ehf~Dls~i~~~kiA~~I~qD~I~ILvnlnGyTkgarneifAlrPAPI 684 (966)
T KOG4626|consen 605 PGMHDRSKVEVFCYALSVNDGTNFRDKVMKEAEHFVDLSQIPCNKIADKIRQDKIHILVNLNGYTKGARNEIFALRPAPI 684 (966)
T ss_pred cCcCCccceEEEEEEeecCCCchHHHHHHhhccceeehhcCChHHHHHHHhhcCceEEEeccccccccccceeeccCCce
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEeccccCCCCCCCcccEEEecCccCCcCCCCCCccceEEcCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEe
Q 003557 528 QVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFAC 607 (811)
Q Consensus 528 q~~~~g~~~t~g~~~~d~~~~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~ 607 (811)
||+|+|||+|||.++|||+|+|.++.|++....|+|++++||+||+++++.++...+.+|...|.|.++|||+|.||||+
T Consensus 685 Qv~wlGyPgTtGa~~mDYiITDs~tsPl~~a~~ysEkLv~lPh~ffi~d~~qk~~~~~dpn~kP~r~~y~Lp~d~vvf~~ 764 (966)
T KOG4626|consen 685 QVMWLGYPGTTGATFMDYIITDSVTSPLELAQQYSEKLVYLPHCFFIGDHKQKNQDVLDPNNKPTRSQYGLPEDAVVFCN 764 (966)
T ss_pred eEEeecCCCCCCCceeeEEeecccCChHHHHHHHHHHHhhCCceEEecCcccccccccCCCCCCCCCCCCCCCCeEEEee
Confidence 99999999999999999999999999999999999999999999999999887777888888899999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCC
Q 003557 608 FNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPL 687 (811)
Q Consensus 608 ~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~ 687 (811)
||+++|+.|.+++.|++||++||||+||++.++..++++++..+.+.|++++||+|.+.....||+.+++.+||.|||++
T Consensus 765 FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaDv~LDTpl 844 (966)
T KOG4626|consen 765 FNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLADVCLDTPL 844 (966)
T ss_pred chhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhhhhhcccCcC
Confidence 99999999999999999999999999999999988899999999999999999999998888999999999999999999
Q ss_pred CCChhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCC
Q 003557 688 CNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCP 767 (811)
Q Consensus 688 ~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~ 767 (811)
++|+||.+|.||+|||+||++|+++++||++|+|..+|+++ +|+.+.+||++++++|++|.+.++.+|.++|..+..||
T Consensus 845 cnGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~h-liak~~eEY~~iaV~Latd~~~L~~lr~~l~~~r~~sp 923 (966)
T KOG4626|consen 845 CNGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGH-LIAKNREEYVQIAVRLATDKEYLKKLRAKLRKARASSP 923 (966)
T ss_pred cCCcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHH-HHhhhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCCCCCCCCC
Q 003557 768 LFDTARWVKNLERSYFKMWSLHCSGQKPQHFKVTENDLDFPCDR 811 (811)
Q Consensus 768 ~~~~~~~~~~~e~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 811 (811)
+||..+++..+|.+|.+||++||.|+.|+|+ +-++++++|-|+
T Consensus 924 lfd~~q~~~~LE~~y~~MW~~y~~G~~p~h~-~me~~~e~~hd~ 966 (966)
T KOG4626|consen 924 LFDTKQYAKGLERLYLQMWKKYCSGEVPDHR-RMENLQEEPHDD 966 (966)
T ss_pred ccCchHHHHHHHHHHHHHHHHhccCCCCchH-HHhccccCcCCC
Confidence 9999999999999999999999999999999 668999999875
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-99 Score=773.60 Aligned_cols=557 Identities=31% Similarity=0.489 Sum_probs=465.9
Q ss_pred HHHHHHHHhccCCCchHHHH--HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH-HHh
Q 003557 213 ASYYKATLAVTTGLSAPFNN--LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR-AIT 289 (811)
Q Consensus 213 ~~~~~~~l~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~ 289 (811)
...+...+..++.++..+.. +...+...+....+...+...+..+|++..+..+++......|....+...+.. +..
T Consensus 51 ~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~ 130 (620)
T COG3914 51 IYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEW 130 (620)
T ss_pred HHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33333333444544444222 345555666666777777777777777777777777777777666666555554 666
Q ss_pred cCCCcHHHHHHH------HHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCChhhH-hHHHHHHHHHHHHH
Q 003557 290 IRPTMAEAHANL------ASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDR-DRMFSEVEGIIRRQ 362 (811)
Q Consensus 290 ~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a-~~~~~~a~~l~~~~ 362 (811)
..|++......+ +.....+|+..++....+++.++.|.++.+...++......|+|.+- ...+-.....+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~~~~~tnl~~~~~~~~-- 208 (620)
T COG3914 131 LSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWPEEAPTNLLSQLALFL-- 208 (620)
T ss_pred cCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccchhccchHHHHHHHHHh--
Confidence 777776655444 77888889999999999999999999999988888888888887631 111111111111
Q ss_pred hcccCCCCCCccccccCCCCHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCCCCcccCCCCccceEeeecCCCCCChhHh
Q 003557 363 VNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSH 442 (811)
Q Consensus 363 ~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrvg~~s~~~~~h~~~~ 442 (811)
...+|....+..++...+.++.++.+.+.-..+ ..+++.... .+....++|+||||+|+|++.|+|++
T Consensus 209 -------~~~~~~~~~~~d~p~~~l~~~~q~~~i~~~~~~--~~~~~~~~~---~~~~~~~~rlRvGylS~dlr~Havg~ 276 (620)
T COG3914 209 -------GIYGFSLAYLADDPLKNLAIANQLLKILSQNAP--ELVRFPIRD---ENIKRNGKRLRVGYLSSDLRSHAVGF 276 (620)
T ss_pred -------hccccchhhhccchhhhHHHHHHHHHHhcccCC--Cccccccch---hhccccccceeEEEeccccccchHHH
Confidence 112344445556688888888888776653222 112222111 11235678999999999999999999
Q ss_pred hHHHHhcccCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCCHHHHHHHHHhCCCeEEEeCCCCCCCcchhhhhc
Q 003557 443 LMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAM 522 (811)
Q Consensus 443 ~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dilv~~~~~~~~~~~~~~~~ 522 (811)
++.+++++|||++||||+|+.++...+.+.++|+..+.+|+++.+|++.+++..|+.|+||||||++|||+.+|..+|++
T Consensus 277 l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~~~~~~~~~~dd~e~a~~I~~d~IdILvDl~g~T~d~r~~v~A~ 356 (620)
T COG3914 277 LLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAVEKWYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTRCQVFAH 356 (620)
T ss_pred HHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhhhheeccCCcCHHHHHHHHHhcCCeEEEeccCceeccchhhhhc
Confidence 99999999999999999999997666779999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEeccccCCCCCCCcccEEEecCccCCcCCCCCCccceEEcCCccccCCCccccccCCCCCCCCCcCCCCCCCCc
Q 003557 523 QPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDK 602 (811)
Q Consensus 523 r~Apvq~~~~g~~~t~g~~~~d~~~~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~ 602 (811)
|||||||+|+|||+|+|+|.|||||+|.++.|++++.+|+|++||||.||++++.... ..+++.|+++|||++.
T Consensus 357 RpAPiqvswlGy~aT~g~p~~DY~I~D~y~vPp~ae~yysEkl~RLp~cy~p~d~~~~------v~p~~sR~~lglp~~a 430 (620)
T COG3914 357 RPAPIQVSWLGYPATTGSPNMDYFISDPYTVPPTAEEYYSEKLWRLPQCYQPVDGFEP------VTPPPSRAQLGLPEDA 430 (620)
T ss_pred CCCceEEeecccccccCCCcceEEeeCceecCchHHHHHHHHHHhcccccCCCCCccc------CCCCcchhhcCCCCCe
Confidence 9999999999999999999999999999999999999999999999999998875421 2235789999999999
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCC--hhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCc
Q 003557 603 FIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFP--AAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 680 (811)
Q Consensus 603 ~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~--~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~D 680 (811)
+||+|||+.+|++|++++.|++|++++|||+|||.++| +...++++..+++.||+.+|++|.|..+.++|+++|..+|
T Consensus 431 vVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iAD 510 (620)
T COG3914 431 VVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIAD 510 (620)
T ss_pred EEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhh
Confidence 99999999999999999999999999999999999874 4556899999999999999999999999999999999999
Q ss_pred EEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 003557 681 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLK 760 (811)
Q Consensus 681 v~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~~~~~y~~~~~~l~~d~~~~~~~~~~~~ 760 (811)
|||||+||+|+||++|||||||||||+.|++|+||+|+||++++|+|| +||+|.++||++|+++++|...+++.|..++
T Consensus 511 lvLDTyPY~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e-~vA~s~~dYV~~av~~g~dral~q~~r~~l~ 589 (620)
T COG3914 511 LVLDTYPYGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPE-LVADSRADYVEKAVAFGSDRALRQQVRAELK 589 (620)
T ss_pred eeeecccCCCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCch-hhcCCHHHHHHHHHHhcccHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred hhcccCCCCChHHHHHHHHHHHHHHHHHHh
Q 003557 761 SVRLTCPLFDTARWVKNLERSYFKMWSLHC 790 (811)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~e~~y~~~~~~~~ 790 (811)
.++.++|+||++.|+++||.+|.+||..+.
T Consensus 590 ~~r~tspL~d~~~far~le~~y~~M~~~y~ 619 (620)
T COG3914 590 RSRQTSPLFDPKAFARKLETLYWGMWSEYI 619 (620)
T ss_pred hccccCcccCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999864
|
|
| >PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-93 Score=742.13 Aligned_cols=360 Identities=51% Similarity=0.878 Sum_probs=298.0
Q ss_pred ceEeeecCCCCCChhHhhHHHHhcccCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCC-HHHHHHHHHhCCCeE
Q 003557 426 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS-SDMIAKLINEDKIQI 504 (811)
Q Consensus 426 lrvg~~s~~~~~h~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~di 504 (811)
|||||||+||++||+++++.+++++|||++|||+||+.++.+++.++++++..+++|+++.+++ +.++|++|++|+|||
T Consensus 1 LRIGyvS~Df~~Hpv~~l~~~ll~~hDr~rfev~~Ys~~~~d~~~~~~~~~~~~~~~~dl~~~~~~~~~A~~Ir~D~IDI 80 (468)
T PF13844_consen 1 LRIGYVSSDFRNHPVGHLLQPLLENHDRSRFEVFCYSLGPDDGDTFRQRIRAEADHFVDLSGLSDDAEAAQRIRADGIDI 80 (468)
T ss_dssp EEEEEEES-SSSSHHHHHHHHHHHHHHHHTEEEEEEESS---SCHHHHHHHHHSEEEEEEEE-TTSHHHHHHHHHTT-SE
T ss_pred CEEEEECCcchhCHHHHHHHHHHHhcCcccEEEEEEECCCCCCcHHHHHHHHhCCeEEECccCCcHHHHHHHHHHCCCCE
Confidence 7999999999999999999999999999999999999998877778999999999999999886 689999999999999
Q ss_pred EEeCCCCCCCcchhhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCcCCCCCCccceEEcCCccccCCCcccc---
Q 003557 505 LINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKN--- 581 (811)
Q Consensus 505 lv~~~~~~~~~~~~~~~~r~Apvq~~~~g~~~t~g~~~~d~~~~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~--- 581 (811)
||||+|||.|+|+.+|++|||||||+|+|||+|||++.|||+|+|.++.|++.+.+|+|++++||++|+++++....
T Consensus 81 LVDL~GhT~~~R~~ifA~RpAPVQvswlGyp~TtG~~~mDY~ItD~~~~P~~~~~~ysEkLirLP~sy~~~d~~~~~~~~ 160 (468)
T PF13844_consen 81 LVDLSGHTAGNRLEIFALRPAPVQVSWLGYPGTTGLPAMDYIITDPVTDPPEAEEHYSEKLIRLPHSYFCNDHRQMFPHL 160 (468)
T ss_dssp EEESSTSSTSSSHHHHHT-SSSEEEEESSSSS---STT--EEEEETTTS-GGGGGG-SSEEEEESS-S----HHHH-GGG
T ss_pred EEeCCCcCCCCHhHHHhcCCcceEEEecCCCcccCCcccCEEEECCCcCCcccccCCccceEEccCceEECChHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998864311
Q ss_pred --------------------------------------------------------------------------------
Q 003557 582 -------------------------------------------------------------------------------- 581 (811)
Q Consensus 582 -------------------------------------------------------------------------------- 581 (811)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (468)
T PF13844_consen 161 KERIVLEEKDDSRVVDNVAVINATDLSPLLEKTEVKDTVRENIVLSGDGKDATSTEVELPVLEQPTTTPIEQMIASGQVQ 240 (468)
T ss_dssp SS-EEEE--------SSSEEEE-TTHHHHHHTSST-EEEEE---------------EEEEEEESSHHHHHHHHHHHT-SE
T ss_pred hhceEeccccCCcccchhhhhhhhcCchhhhhcchHHHHHHHHhhcCCchhcccceEecccccCccHHHHHHHHHcCCee
Confidence
Q ss_pred ------------------------ccCCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEee
Q 003557 582 ------------------------MDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLL 637 (811)
Q Consensus 582 ------------------------~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~ 637 (811)
..++.......|+++|||+|+|||||||+..|++|+++++|++||+++|+|+|||.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~R~~~gLp~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~ 320 (468)
T PF13844_consen 241 TSVNGVVVQNGLATTQTNNKAATGEEVPQNIVVTTRAQYGLPEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLL 320 (468)
T ss_dssp EEETTEEEEECCGHHHH-HHHHTTSS--SSEEEEETGGGT--SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEE
T ss_pred EeECCEEeecccchhhhhccccCCccCCccccccCHHHcCCCCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEe
Confidence 00000101248999999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchh
Q 003557 638 RFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 717 (811)
Q Consensus 638 ~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~ 717 (811)
..+...++++++.++++||+++||+|.+..+..+|+.+|+.+||+||||||+||||++|||||||||||++|++++||+|
T Consensus 321 ~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~ 400 (468)
T PF13844_consen 321 RFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVG 400 (468)
T ss_dssp ETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHH
T ss_pred eCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHH
Confidence 87776788999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHH
Q 003557 718 GSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMW 786 (811)
Q Consensus 718 ~~~l~~~g~~~~~v~~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~ 786 (811)
+|+|+++|++| ||+.|.++|+++|++|++|++.|+++|+++|+++.+||+||.++|+++||++|++||
T Consensus 401 aSiL~~lGl~E-lIA~s~~eYv~~Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~mW 468 (468)
T PF13844_consen 401 ASILRALGLPE-LIADSEEEYVEIAVRLATDPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQMW 468 (468)
T ss_dssp HHHHHHHT-GG-GB-SSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCch-hcCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999999 999999999999999999999999999999999999999999999999999999999
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=359.25 Aligned_cols=355 Identities=37% Similarity=0.609 Sum_probs=247.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 003557 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 81 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 81 (811)
+..++++....-..+++.+|.-.++|..+|+++...|++++|+..|+.++++.|++.++|.++|.++...|+.+.|...|
T Consensus 94 q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~ 173 (966)
T KOG4626|consen 94 QGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCF 173 (966)
T ss_pred cccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHH
Confidence 44567788888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Q 003557 82 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE 160 (811)
Q Consensus 82 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 160 (811)
..+++++|....+...+|.++..+|+.++|..+|.++++..|. +.+|.+||.++...|+...|+..|+++++++|+..+
T Consensus 174 ~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~d 253 (966)
T KOG4626|consen 174 FEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLD 253 (966)
T ss_pred HHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchH
Confidence 9999999988777777777777777777777777777777766 666667777766677777777777777777777666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHc
Q 003557 161 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 240 (811)
Q Consensus 161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 240 (811)
+|+++|.+|...+.+++|+..|.+++...|++..++.++|.+|.++|..+-|+..|+++++..|..+.+++++|..+...
T Consensus 254 AYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 254 AYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDK 333 (966)
T ss_pred HHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhc
Confidence 77777666666666666666666666666655555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 003557 241 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 320 (811)
Q Consensus 241 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 320 (811)
|+..+|..+|++++.+.|+.+++.+++|.++.++|++++|..+|+++++..|+...++.+||.+|.++|++++|+.+|++
T Consensus 334 G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHH
Q 003557 321 ALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVE 356 (811)
Q Consensus 321 al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~ 356 (811)
++.+.|...+++.|++.++..+|+...|...+.+|+
T Consensus 414 alrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 414 ALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred HHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 555555555555555555555555555555554443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=333.65 Aligned_cols=542 Identities=12% Similarity=0.081 Sum_probs=367.5
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003557 177 EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 256 (811)
Q Consensus 177 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 256 (811)
+++.-+.......|++++++..||.+....|.+++|..+++.+++..|++..++..++.++.+.+++++|+..+++++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 33333344445678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 003557 257 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLL 336 (811)
Q Consensus 257 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 336 (811)
+|+++..++.+|.++.+.|++++|+..|++++..+|++..++..+|.++...|+.++|...|+++++...+-...+.+++
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998766555554443
Q ss_pred HHhhhcCChhhHhHHHHHHHHHHHHHhcccCCCCCCccccccCCCCHHHHHHHH-HHHHHhhhhhhhhcCCCCCCCCCCC
Q 003557 337 HTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEIS-RKYASHCSIIASRFALPPFNHPVPI 415 (811)
Q Consensus 337 ~~~~~~~~~~~a~~~~~~a~~l~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (811)
.-+.. -..++++.--.+...+..+ .+ +. ++.+ ..|.+.. ...+.+|
T Consensus 230 ~~~~~-------------~~~~~~~~~~~~~~~~~~~--~~---~~----~~~~~~~~~~~~--------~~~~~~~--- 276 (694)
T PRK15179 230 VDLNA-------------DLAALRRLGVEGDGRDVPV--SI---LV----LEKMLQEIGRRR--------NAEYDAG--- 276 (694)
T ss_pred HHHHH-------------HHHHHHHcCcccccCCCce--ee---ee----HHHHHHHHhhcC--------cccccCC---
Confidence 32222 1222222211111111110 00 11 1111 1121110 0112222
Q ss_pred CcccCCCCccc-eEeeecCCCCCChhHhhHHHHhcccCCCCe--------------EEEEEecCCCC-ChHHHHHHHhcc
Q 003557 416 PIRLDGGLRRL-RVGYVSSDFGNHPLSHLMGSVFGMHNKENV--------------EVFCYALSPND-GTEWRQRTQSEA 479 (811)
Q Consensus 416 ~~~~~~~~~~l-rvg~~s~~~~~h~~~~~l~~l~~~~d~~~~--------------ev~~y~~~~~~-~~~~~~~~~~~~ 479 (811)
|.+.. ||.++...+...+..+.+..+..++++.++ +|+|.+....+ .+.+...+++.+
T Consensus 277 ------~~~~~~rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~G 350 (694)
T PRK15179 277 ------PESFVGPVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAG 350 (694)
T ss_pred ------CCCCcceEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCC
Confidence 23445 899999999999999999999888888754 56666543322 234666676666
Q ss_pred CceEECCCCC----------------------------HHHHHHHHHhCCCeEEEeCCCCCCCcchhhhhc---C--CCc
Q 003557 480 EHFVDVSAMS----------------------------SDMIAKLINEDKIQILINLNGYTKGARNEIFAM---Q--PAP 526 (811)
Q Consensus 480 ~~~~~~~~~~----------------------------~~~~~~~i~~~~~dilv~~~~~~~~~~~~~~~~---r--~Ap 526 (811)
..+..+.... ...+.+.|++.++||+ |++..+..+++. + ..|
T Consensus 351 v~v~~l~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIV-----H~h~~~a~~lg~lAa~~~gvP 425 (694)
T PRK15179 351 IPVSVYSDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVV-----HIWQDGSIFACALAALLAGVP 425 (694)
T ss_pred CeEEEeccCCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEE-----EEeCCcHHHHHHHHHHHcCCC
Confidence 5444432211 1567889999999999 777665544332 2 247
Q ss_pred eEE-eccccCCCCCCC--------------ccc--EEEecCccCCcCC---CCCCccceEEcCCccccCCCccccccCCC
Q 003557 527 IQV-SYMGFPGTTGAS--------------YID--YLVTDEFVSPLRY---AHIYSEKLVHVPHCYFVNDYKQKNMDVLD 586 (811)
Q Consensus 527 vq~-~~~g~~~t~g~~--------------~~d--~~~~d~~~~p~~~---~~~~~e~~~~lp~~~~~~~~~~~~~~~~~ 586 (811)
+.+ ++-+.+...... ..+ .+++.....-... ...-.+++..+|++.-... +.++
T Consensus 426 vIv~t~h~~~~~~~~~~~~~~~~~l~~~l~~~~~~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~------f~~~ 499 (694)
T PRK15179 426 RIVLSVRTMPPVDRPDRYRVEYDIIYSELLKMRGVALSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLK------SVQD 499 (694)
T ss_pred EEEEEeCCCccccchhHHHHHHHHHHHHHHhcCCeEEEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHh------cCCC
Confidence 655 433332111100 011 2222111000000 0111245555565432111 1111
Q ss_pred CCCCCCcC--CCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceE
Q 003557 587 PNCQPKRS--DYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQII 662 (811)
Q Consensus 587 ~~~~~~r~--~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~ 662 (811)
+.....+. ..+++++.+++|+++|+ .|+.+.+++++++++++.|+.+|+|+|+|+. ++.+++.++++|+ .++|+
T Consensus 500 ~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~-~~~L~~l~~~lgL-~~~V~ 577 (694)
T PRK15179 500 DACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPL-LESVREFAQRLGM-GERIL 577 (694)
T ss_pred chhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCcc-hHHHHHHHHHcCC-CCcEE
Confidence 11111111 23356677899998876 5999999999999999999999999999876 7889999999999 69999
Q ss_pred EcCCCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhH--HHHHhcCCCCccccC--C--H
Q 003557 663 FTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAG--SLCLATGLGEEMIVN--S--M 735 (811)
Q Consensus 663 ~~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~--~~l~~~g~~~~~v~~--~--~ 735 (811)
|.|..+ +...+|+.+|||+-|+.++| |++++|||+||+|||+ +++|. .++.. |.++ ++.. | .
T Consensus 578 flG~~~--dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVa-------t~~gG~~EiV~d-g~~G-lLv~~~d~~~ 646 (694)
T PRK15179 578 FTGLSR--RVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVT-------TLAGGAGEAVQE-GVTG-LTLPADTVTA 646 (694)
T ss_pred EcCCcc--hHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEE-------ECCCChHHHccC-CCCE-EEeCCCCCCh
Confidence 999754 55566889999999999999 9999999999999995 44441 12211 4444 3332 3 3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 003557 736 KEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 783 (811)
Q Consensus 736 ~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 783 (811)
+++.+.+.++..+......++++.++.. ...|+.+.++++++++|+
T Consensus 647 ~~La~aL~~ll~~l~~~~~l~~~ar~~a--~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 647 PDVAEALARIHDMCAADPGIARKAADWA--SARFSLNQMIASTVRCYQ 692 (694)
T ss_pred HHHHHHHHHHHhChhccHHHHHHHHHHH--HHhCCHHHHHHHHHHHhC
Confidence 5777777776665554555666666655 235999999999999995
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=313.14 Aligned_cols=359 Identities=18% Similarity=0.203 Sum_probs=320.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 003557 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 81 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 81 (811)
+.|+|++|+..|+++++..|+ ...+..+|.+|...|++++|+..++++++.+|++..+++.+|.+|..+|++++|+..|
T Consensus 139 ~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~ 217 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217 (615)
T ss_pred HcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 579999999999999999996 7789999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHhcCCCCH------------------------------HHHHHHHH-------------------------------
Q 003557 82 KEAVKLKPTFP------------------------------DAYLNLGN------------------------------- 100 (811)
Q Consensus 82 ~~al~~~p~~~------------------------------~~~~~la~------------------------------- 100 (811)
..+...++.+. ..+..++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (615)
T TIGR00990 218 TASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQL 297 (615)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHH
Confidence 66544332211 11111111
Q ss_pred --HH---HHcCChHHHHHHHHHHHhhC---CC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 003557 101 --VY---KALGMPQEAIMCYQRAVQTR---PN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKD 171 (811)
Q Consensus 101 --~~---~~~g~~~~A~~~~~~al~~~---p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 171 (811)
.+ ...+++++|++.|+++++.. |+ ..++..+|.++...|++++|+..++++++.+|++...+..+|.++..
T Consensus 298 ~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~ 377 (615)
T TIGR00990 298 GLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLE 377 (615)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 11 12357899999999999864 55 77899999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHH
Q 003557 172 VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYN 251 (811)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (811)
.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++...+..+|.++.+.|++++|+..|+
T Consensus 378 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 378 LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHH------HHHH-HHHHhCCCHHHHHHHHHHHHhc
Q 003557 252 EVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH------ANLA-SAYKDSGHVEAAIKSYKQALLL 324 (811)
Q Consensus 252 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~la-~~~~~~g~~~~A~~~~~~al~~ 324 (811)
++++..|+++.++..+|.++...|++++|++.|++++++.|++...+ ...+ .++...|++++|++.+++++++
T Consensus 458 ~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 458 RCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999988753322 2223 3344579999999999999999
Q ss_pred CCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHHHH
Q 003557 325 RPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRR 361 (811)
Q Consensus 325 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l~~~ 361 (811)
+|++..++..++.++...|++++|...|+++.++.++
T Consensus 538 ~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 538 DPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999887664
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-31 Score=300.55 Aligned_cols=328 Identities=13% Similarity=0.052 Sum_probs=304.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 003557 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 80 (811)
Q Consensus 1 l~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 80 (811)
+++|++++|+.+++.++...|.+.++++.+|.+....|++++|+..|++++..+|+++.++..+|.++...|++++|+..
T Consensus 53 ~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~ 132 (656)
T PRK15174 53 LRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADL 132 (656)
T ss_pred HhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCC-Cc
Q 003557 81 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDP-RF 158 (811)
Q Consensus 81 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~ 158 (811)
|+++++.+|+++.++..++.++...|++++|+..+++++...|+ ...+..++ .+...|++++|+..++++++.+| ..
T Consensus 133 l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~ 211 (656)
T PRK15174 133 AEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALER 211 (656)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999888 55555543 48889999999999999998875 33
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHH----HHHHHHHHHhccCCCchHHHHHH
Q 003557 159 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA----AASYYKATLAVTTGLSAPFNNLA 234 (811)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~~l~~~~~~~~~~~~la 234 (811)
......++.++...|++++|+..++++++.+|+++.++..+|.++...|++++ |+..|+++++..|++..++..+|
T Consensus 212 ~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg 291 (656)
T PRK15174 212 QESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYA 291 (656)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 44556678889999999999999999999999999999999999999999986 89999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHH
Q 003557 235 VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAA 314 (811)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 314 (811)
.++...|++++|+..++++++.+|+++.++..+|.++.+.|++++|+..|+++++.+|++...+..+|.++...|++++|
T Consensus 292 ~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA 371 (656)
T PRK15174 292 DALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEA 371 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888788889999999999999
Q ss_pred HHHHHHHHhcCCCCh
Q 003557 315 IKSYKQALLLRPDFP 329 (811)
Q Consensus 315 ~~~~~~al~~~p~~~ 329 (811)
+..|+++++.+|++.
T Consensus 372 ~~~l~~al~~~P~~~ 386 (656)
T PRK15174 372 ESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHhChhhc
Confidence 999999999999875
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-30 Score=317.25 Aligned_cols=356 Identities=20% Similarity=0.175 Sum_probs=313.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--------------HHHHHHHH
Q 003557 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI--------------AWSNLAGL 67 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~la~~ 67 (811)
..|++++|+..|+++++.+|++..++..+|.++.+.|++++|+..|+++++.+|++.. ....+|.+
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999999999987642 22355788
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhH---------------
Q 003557 68 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNL--------------- 131 (811)
Q Consensus 68 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~l--------------- 131 (811)
+...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++.+|+ ..++..+
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~ 440 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAF 440 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999887 4444333
Q ss_pred ---------------------------HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003557 132 ---------------------------ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 184 (811)
Q Consensus 132 ---------------------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 184 (811)
+..+...|++++|++.|+++++.+|++..+++.++.+|...|++++|+..+++
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRR 520 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455789999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHH----------------------------------------HhccC
Q 003557 185 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT----------------------------------------LAVTT 224 (811)
Q Consensus 185 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~----------------------------------------l~~~~ 224 (811)
+++..|+++..++.++..+...+++++|+..++++ ++..|
T Consensus 521 al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p 600 (1157)
T PRK11447 521 LAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP 600 (1157)
T ss_pred HHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 99999999988888887777777777777766542 22357
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 003557 225 GLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASA 304 (811)
Q Consensus 225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 304 (811)
.++..+..+|.++.+.|++++|+..|+++++.+|+++.++..++.++...|++++|++.++++++..|++..++..+|.+
T Consensus 601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~ 680 (1157)
T PRK11447 601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALA 680 (1157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 77788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCCCh------HHHHHHHHHhhhcCChhhHhHHHHHHHH
Q 003557 305 YKDSGHVEAAIKSYKQALLLRPDFP------EATCNLLHTLQCVCSWEDRDRMFSEVEG 357 (811)
Q Consensus 305 ~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~a~~~~~~a~~ 357 (811)
+...|++++|+++|+++++..|+++ .++..++..+...|++++|...|+++..
T Consensus 681 ~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999998876654 3455567788888998888888888753
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-30 Score=314.35 Aligned_cols=354 Identities=23% Similarity=0.254 Sum_probs=244.6
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 003557 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 81 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 81 (811)
..|++++|++.|+++++.+|.+..++..++.++...|++++|+..+++++..+|.+...+..++.++...|++++|+..+
T Consensus 511 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 511 QEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 45777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Q 003557 82 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE 160 (811)
Q Consensus 82 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 160 (811)
+++++..|.++..+..++.++...|++++|+..|+++++..|+ ...+..++.++...|++++|+..++++++.+|++..
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 670 (899)
T TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTE 670 (899)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Confidence 7777777777777777777777777777777777777777766 666777777777777777777777777777777766
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHc
Q 003557 161 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 240 (811)
Q Consensus 161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 240 (811)
++..++.++...|++++|...++.+.+..|.++..+..+|.++...|++++|+..|++++...|++ ..+..++.++...
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 749 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLAS 749 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHC
Confidence 776666666666666666666666666666666666666666666666666666666666665555 4455566666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 003557 241 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 320 (811)
Q Consensus 241 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 320 (811)
|++++|.+.++++++.+|++..+++.+|.++...|++++|++.|+++++.+|+++.++..++.++...|+ .+|+.++++
T Consensus 750 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666666666 556666666
Q ss_pred HHhcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHH
Q 003557 321 ALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEG 357 (811)
Q Consensus 321 al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~ 357 (811)
+++..|+++..+.+++..+...|++++|...++++.+
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 829 ALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666666666666666666666666666655554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-29 Score=309.59 Aligned_cols=355 Identities=21% Similarity=0.279 Sum_probs=340.6
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 003557 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 81 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 81 (811)
..|++++|+..|+++++.+|++..++..++.++...|++++|+..|++++...|.+..++..++.++...|++++|+..+
T Consensus 477 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 556 (899)
T TIGR02917 477 GKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWL 556 (899)
T ss_pred hCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Q 003557 82 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE 160 (811)
Q Consensus 82 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 160 (811)
+++++.+|.+...+..++..+...|++++|+..++++++..|+ ...+..++.++...|++++|+..|+++++.+|++..
T Consensus 557 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 636 (899)
T TIGR02917 557 EKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSAL 636 (899)
T ss_pred HHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 9999999999999999999999999999999999999999888 889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHc
Q 003557 161 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 240 (811)
Q Consensus 161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 240 (811)
.+..++.++...|++++|...|+++++.+|++..++..++.++...|++++|...++.+.+..|.+...+..+|.++...
T Consensus 637 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (899)
T TIGR02917 637 ALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQ 716 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 003557 241 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 320 (811)
Q Consensus 241 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 320 (811)
|++++|++.|+++++..|++ ..+..++.++...|++++|++.++++++.+|++..+++.+|.+|...|++++|++.|++
T Consensus 717 g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 717 KDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 99999999999999999887 77888999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHH
Q 003557 321 ALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 358 (811)
Q Consensus 321 al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l 358 (811)
+++.+|+++.++.+++..+...++ .+|...++++.++
T Consensus 796 ~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 796 VVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 999999999999999999999988 7777777766543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-29 Score=286.10 Aligned_cols=358 Identities=11% Similarity=-0.011 Sum_probs=323.1
Q ss_pred CCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 003557 3 KGRLNEAAQCCRQALAL---NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ 79 (811)
Q Consensus 3 ~g~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 79 (811)
+.+|+.-.-++.+..+. ..++.......+..+.+.|++++|+..++..+...|+++.+++.++.+....|++++|+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~ 97 (656)
T PRK15174 18 QEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQ 97 (656)
T ss_pred hhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHH
Confidence 34444444444443332 223444566677888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 003557 80 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF 158 (811)
Q Consensus 80 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 158 (811)
.|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+ ..++..++.++...|++++|+..+++++...|++
T Consensus 98 ~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~ 177 (656)
T PRK15174 98 VVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR 177 (656)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999999 8899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHH
Q 003557 159 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS-HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIY 237 (811)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 237 (811)
...+..++ .+...|++++|+..++++++..|. +......++.++...|++++|+..++++++..|++...+..+|.++
T Consensus 178 ~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l 256 (656)
T PRK15174 178 GDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAY 256 (656)
T ss_pred HHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 98887765 488999999999999999998763 3445566788999999999999999999999999999999999999
Q ss_pred HHcCCHHH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHH
Q 003557 238 KQQGNYAD----AISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEA 313 (811)
Q Consensus 238 ~~~g~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 313 (811)
...|++++ |+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++
T Consensus 257 ~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~e 336 (656)
T PRK15174 257 YQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTA 336 (656)
T ss_pred HHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999986 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHHHH
Q 003557 314 AIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRR 361 (811)
Q Consensus 314 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l~~~ 361 (811)
|+..|+++++.+|++......++.++...|++++|...|+++.+.-.+
T Consensus 337 A~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 337 ASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 999999999999999887777888899999999999999888876333
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.2e-29 Score=286.35 Aligned_cols=333 Identities=17% Similarity=0.184 Sum_probs=288.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003557 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 103 (811)
Q Consensus 24 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 103 (811)
+..+..+|..++..|+|++|+..|++++...|+ +..+.++|.+|..+|++++|+..++++++++|++..+++.+|.+|.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345778999999999999999999999999996 7889999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhhCCC-------------------------------hhHH------------------------
Q 003557 104 ALGMPQEAIMCYQRAVQTRPN-------------------------------AIAF------------------------ 128 (811)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~-------------------------------~~~~------------------------ 128 (811)
.+|++++|+..|..+....+. ...+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999999877665433221 0000
Q ss_pred ---------HhHHHHH---HHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 003557 129 ---------GNLASTY---YERGQADMAILYYKQAIGC---DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP 193 (811)
Q Consensus 129 ---------~~la~~~---~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 193 (811)
..++..+ ...+++++|++.|+++++. .|+...++..+|.++..+|++++|+..|+++++.+|++.
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 1111111 1235789999999999976 477788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 003557 194 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE 273 (811)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 273 (811)
..+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++...+..+|.++.+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHH------HH-hhhcCChh
Q 003557 274 IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLL------HT-LQCVCSWE 346 (811)
Q Consensus 274 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~------~~-~~~~~~~~ 346 (811)
.|++++|+..|+++++..|+++.++..+|.++...|++++|++.|++++++.|++...+.++. .. +...++++
T Consensus 446 ~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 999999999999999999999999999999999999999999999999999998655443322 12 22245555
Q ss_pred hHhHHHHHHHH
Q 003557 347 DRDRMFSEVEG 357 (811)
Q Consensus 347 ~a~~~~~~a~~ 357 (811)
+|...++++.+
T Consensus 526 eA~~~~~kAl~ 536 (615)
T TIGR00990 526 EAENLCEKALI 536 (615)
T ss_pred HHHHHHHHHHh
Confidence 55555555544
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=301.20 Aligned_cols=330 Identities=19% Similarity=0.181 Sum_probs=297.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH--------------H
Q 003557 29 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD--------------A 94 (811)
Q Consensus 29 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~ 94 (811)
.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 55889999999999999999999999999999999999999999999999999999999997643 1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH------
Q 003557 95 YLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN------ 167 (811)
Q Consensus 95 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~------ 167 (811)
...++.++...|++++|+..|+++++.+|+ ..++..+|.++...|++++|++.|+++++.+|++..++..++.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 234578899999999999999999999998 8899999999999999999999999999999998876655544
Q ss_pred ------------------------------------HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHH
Q 003557 168 ------------------------------------ALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 211 (811)
Q Consensus 168 ------------------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 211 (811)
.+...|++++|++.|+++++.+|+++.+++.++.+|...|++++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHH--------------------------------------
Q 003557 212 AASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV-------------------------------------- 253 (811)
Q Consensus 212 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-------------------------------------- 253 (811)
|+..++++++..|.++..++.++..+...+++++|+..++++
T Consensus 514 A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 514 ADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999988888777777777777776665542
Q ss_pred --HhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHH
Q 003557 254 --LRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 331 (811)
Q Consensus 254 --l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 331 (811)
++..|.++..+..+|.++.+.|++++|++.|+++++.+|+++.++..++.+|...|++++|++.++++++..|++..+
T Consensus 594 ~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~ 673 (1157)
T PRK11447 594 ALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNT 673 (1157)
T ss_pred HHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHH
Confidence 224678888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCChhhHhHHHHHHHHH
Q 003557 332 TCNLLHTLQCVCSWEDRDRMFSEVEGI 358 (811)
Q Consensus 332 ~~~l~~~~~~~~~~~~a~~~~~~a~~l 358 (811)
...++.++...|++++|...++++.+.
T Consensus 674 ~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 674 QRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 999999999999998888888877654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-27 Score=240.76 Aligned_cols=365 Identities=18% Similarity=0.179 Sum_probs=312.0
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 003557 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 80 (811)
Q Consensus 1 l~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 80 (811)
+++|+|++|+++|.++++..|+.+..|.+++.+|...|++++.++...++++++|+...+++..+.++..+|++++|+..
T Consensus 126 f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D 205 (606)
T KOG0547|consen 126 FRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFD 205 (606)
T ss_pred hhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHh
Confidence 47899999999999999999998999999999999999999999999999999999999999999999999999998654
Q ss_pred HHHH------------------Hhc--------------CCCCHH-------------------------HHHHHHHHH-
Q 003557 81 YKEA------------------VKL--------------KPTFPD-------------------------AYLNLGNVY- 102 (811)
Q Consensus 81 ~~~a------------------l~~--------------~p~~~~-------------------------~~~~la~~~- 102 (811)
..-. ++. .|.-|. ....+...+
T Consensus 206 ~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~ 285 (606)
T KOG0547|consen 206 VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALE 285 (606)
T ss_pred hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHH
Confidence 3211 110 111111 011111111
Q ss_pred -HHcC---ChHHHHHHHHHHHhhC-----CC---------hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 003557 103 -KALG---MPQEAIMCYQRAVQTR-----PN---------AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNN 164 (811)
Q Consensus 103 -~~~g---~~~~A~~~~~~al~~~-----p~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 164 (811)
...+ .|.+|...+.+..... .+ ..++...|..++-.|++-.|...++++++++|.+...|..
T Consensus 286 ~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~ 365 (606)
T KOG0547|consen 286 ALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIK 365 (606)
T ss_pred HHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHH
Confidence 1111 4555555555443321 11 4566677888888999999999999999999999989999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHH
Q 003557 165 LGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 244 (811)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~ 244 (811)
++.+|....+.++-...|.++..++|+++++|+..|.+++-.+++++|+.-|++++.++|.+..++..++.+.+++++++
T Consensus 366 ~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~ 445 (606)
T KOG0547|consen 366 RAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIA 445 (606)
T ss_pred HHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHH-hCCCHHHHHHH
Q 003557 245 DAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT------MAEAHANLASAYK-DSGHVEAAIKS 317 (811)
Q Consensus 245 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~-~~g~~~~A~~~ 317 (811)
+++..|+++.+..|+.++.+...|.++..++++++|++.|.+++++.|. ++..+.+.|.+.. ..+++..|.+.
T Consensus 446 ~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~L 525 (606)
T KOG0547|consen 446 ESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENL 525 (606)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 5555555554433 35999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHHHHHhcc
Q 003557 318 YKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNM 365 (811)
Q Consensus 318 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l~~~~~~~ 365 (811)
++++++++|....++..|+.....+|+.++|..+|+++..+.+.|.++
T Consensus 526 l~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~ 573 (606)
T KOG0547|consen 526 LRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESEM 573 (606)
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999999999999999988877644
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-26 Score=271.21 Aligned_cols=355 Identities=16% Similarity=0.112 Sum_probs=303.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003557 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYK 82 (811)
Q Consensus 3 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 82 (811)
.|+.++|++.+.++...+|....++..+|.++...|++++|+..|+++++.+|.++.++..++.++...|++++|+..++
T Consensus 28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~ 107 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAK 107 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 68899999999999888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHH---------------
Q 003557 83 EAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAIL--------------- 146 (811)
Q Consensus 83 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~--------------- 146 (811)
++++..|++.. +..+|.++...|++++|+..++++++..|+ ..++..++.++...+..++|++
T Consensus 108 ~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l 186 (765)
T PRK10049 108 QLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDL 186 (765)
T ss_pred HHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999 999999999999999999999999999998 7777788888777666655443
Q ss_pred -------------------------------HHHHHHHcCCCcHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003557 147 -------------------------------YYKQAIGCDPRFLE-------AYNNLGNALKDVGRVDEAIQCYNQCLSL 188 (811)
Q Consensus 147 -------------------------------~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~ 188 (811)
.++++++..|.++. +.......+...|++++|+..|+++++.
T Consensus 187 ~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~ 266 (765)
T PRK10049 187 EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE 266 (765)
T ss_pred HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 44444433222211 1122123446779999999999999988
Q ss_pred CCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC----chHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----
Q 003557 189 QPSHP-QALTNLGNIYMEWNMLPAAASYYKATLAVTTGL----SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL---- 259 (811)
Q Consensus 189 ~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---- 259 (811)
.+..+ .+...++.+|...|++++|+..|+++++..|.+ ......++.++.+.|++++|+..++++.+..|.
T Consensus 267 ~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~ 346 (765)
T PRK10049 267 GQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRL 346 (765)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEee
Confidence 65433 344557999999999999999999999888765 345677888899999999999999999988762
Q ss_pred -----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Q 003557 260 -----------AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 328 (811)
Q Consensus 260 -----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 328 (811)
...++..++.++...|++++|++.+++++...|++..++..+|.++...|++++|++.++++++++|++
T Consensus 347 ~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 347 YGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 235778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhcCChhhHhHHHHHHHHH
Q 003557 329 PEATCNLLHTLQCVCSWEDRDRMFSEVEGI 358 (811)
Q Consensus 329 ~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l 358 (811)
..+.+.++..+...++|++|...++++++.
T Consensus 427 ~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 427 INLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999888888887764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-25 Score=258.26 Aligned_cols=330 Identities=14% Similarity=0.057 Sum_probs=287.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 003557 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 81 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 81 (811)
+.|++++|+..++++++.+|.+..++..++.++...|++++|+..++++++..|++.. +..+|.++...|++++|+..+
T Consensus 61 ~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l 139 (765)
T PRK10049 61 NLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAM 139 (765)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH---------------------------------------------
Q 003557 82 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQ--------------------------------------------- 116 (811)
Q Consensus 82 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~--------------------------------------------- 116 (811)
+++++..|+++.++..++.++...+..++|+..++
T Consensus 140 ~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 140 TQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHH
Confidence 99999999999999999999887777665554444
Q ss_pred -HHHhh---CCChh-----HHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003557 117 -RAVQT---RPNAI-----AFGNLASTYYERGQADMAILYYKQAIGCDPRF-LEAYNNLGNALKDVGRVDEAIQCYNQCL 186 (811)
Q Consensus 117 -~al~~---~p~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al 186 (811)
++++. +|... +.......+...|++++|+..|+++++..+.. ..+...++.+|...|++++|+..|++++
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 33332 22211 11111223467799999999999999876432 2244446999999999999999999999
Q ss_pred hcCCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC---------------chHHHHHHHHHHHcCCHHHHH
Q 003557 187 SLQPSH----PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGL---------------SAPFNNLAVIYKQQGNYADAI 247 (811)
Q Consensus 187 ~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---------------~~~~~~la~~~~~~g~~~~A~ 247 (811)
+.+|.+ ......++.++...|++++|+..++++....|.. ..++..++.++...|++++|+
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 988766 3567778888999999999999999999887632 245678899999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 003557 248 SCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 327 (811)
Q Consensus 248 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 327 (811)
+.+++++...|.+..++..+|.++...|++++|++.++++++.+|++..+++.+|.++...|++++|...++++++..|+
T Consensus 380 ~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 380 MRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHH
Q 003557 328 FPEAT 332 (811)
Q Consensus 328 ~~~~~ 332 (811)
++.+.
T Consensus 460 ~~~~~ 464 (765)
T PRK10049 460 DPGVQ 464 (765)
T ss_pred CHHHH
Confidence 98653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-25 Score=255.08 Aligned_cols=353 Identities=15% Similarity=0.067 Sum_probs=307.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCC-----
Q 003557 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF---AIAWSNLAGLFMESGD----- 73 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~----- 73 (811)
..+.+.+|.+..+.+.+..|.+...+..++....+.|++++|...|+++....++. ......++.+|...+.
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred ccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 45788899999999999889999999999999999999999999999998863322 2344477777776644
Q ss_pred --------------------H---HHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHH
Q 003557 74 --------------------L---NRALQYYKEAVKLKPT--FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAF 128 (811)
Q Consensus 74 --------------------~---~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 128 (811)
. ..+...+.+++...|. ++.+++.+|.++.. ++.++|+..+.+++...|+....
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~ 512 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQH 512 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHH
Confidence 2 2234445555666677 89999999999987 89999999999999999986566
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Q 003557 129 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNM 208 (811)
Q Consensus 129 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 208 (811)
..++..+...|++++|+..|+++....|.+ ..+..+|.++...|++++|..+++++++.+|++...+..++......|+
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCC
Confidence 677888889999999999999988776665 4678899999999999999999999999999988888877777778899
Q ss_pred hHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003557 209 LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAI 288 (811)
Q Consensus 209 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 288 (811)
+++|+..++++++.+|+ ...+.++|.++.+.|++++|+..|+++++.+|+++.++.++|.++...|++++|++.|++++
T Consensus 592 ~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 592 PELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999996 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHH
Q 003557 289 TIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEG 357 (811)
Q Consensus 289 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~ 357 (811)
+.+|+++.+++++|.++...|++++|+..|+++++++|++..+....+.......++..+.+.+.....
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999988888777777666655555555554443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=240.34 Aligned_cols=305 Identities=21% Similarity=0.279 Sum_probs=282.7
Q ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003557 26 AHSNLGNLMKA--QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 103 (811)
Q Consensus 26 ~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 103 (811)
.+..+|..|.. .-+..+|+..|.+.-...++..+++..+|..|+++++|++|.++|+.+-+..|-..+..-.+..+++
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW 398 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW 398 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 44455555544 4567899999999777778888999999999999999999999999999999987776667777777
Q ss_pred HcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 003557 104 ALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182 (811)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 182 (811)
.+.+.-+--.+.+..++.+|+ +++|..+|++|..+++++.|++.|+++++++|.+..+|..+|.-+.....+|+|..+|
T Consensus 399 HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~f 478 (638)
T KOG1126|consen 399 HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSF 478 (638)
T ss_pred HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHH
Confidence 777766666667778888998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 003557 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD 262 (811)
Q Consensus 183 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 262 (811)
++++..+|.+..+|+.+|.+|.++++++.|+-.|+++++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++-
T Consensus 479 r~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 479 RKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred HhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChH
Q 003557 263 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 330 (811)
Q Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 330 (811)
..+..|.++..++++++|+..+++..++-|++..+++.+|.+|.+.|+.+.|+..|.-|..++|.-..
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999999999999999999999999999999999999999999999999998654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-26 Score=238.28 Aligned_cols=292 Identities=20% Similarity=0.259 Sum_probs=276.2
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003557 5 RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 84 (811)
Q Consensus 5 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 84 (811)
+..+|+..|++.-+..++...++..+|.+|+.+++|++|..+|+.+-+..|-.....-....+++.+.+--+--.+.+..
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 56889999999777778888899999999999999999999999999999987777777777788877766666677788
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 003557 85 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYN 163 (811)
Q Consensus 85 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 163 (811)
++.+|+.|+.|..+|++|..+++++.|+++|+++++++|. ..+|..+|.-+.....+|+|..+|+.++..+|.+..+|+
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwY 493 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWY 493 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHH
Confidence 8999999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCH
Q 003557 164 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 243 (811)
Q Consensus 164 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 243 (811)
.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+.+|++++..+|.++...+..+.++...+++
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH
Q 003557 244 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 296 (811)
Q Consensus 244 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 296 (811)
++|+..+++..+..|+...+++.+|.+|.+.|+.+.|+..|.-|..++|.-..
T Consensus 574 ~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 574 VEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999999999999999999999999999999999997543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-24 Score=233.25 Aligned_cols=355 Identities=20% Similarity=0.267 Sum_probs=267.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHH
Q 003557 2 RKGRLNEAAQCCRQALALNPL-LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG---DLNRA 77 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A 77 (811)
..|+|..|+.+|++++..+|. -++....+|.++.+.|+.+.|+..|.++++++|.++.++..||.+-.... .+..+
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~ 255 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKG 255 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHH
Confidence 457777777777777777765 34556667777777777777777777777777777777777777655544 45667
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----hhHHHhHHHHHHHcCCHHHHHHHHHHHHH
Q 003557 78 LQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIAFGNLASTYYERGQADMAILYYKQAIG 153 (811)
Q Consensus 78 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 153 (811)
...+.++...++.+|.++..|+..++..|+++.+..+...++...-. ++.++.+|.+|..+|++++|..+|.++++
T Consensus 256 ~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k 335 (1018)
T KOG2002|consen 256 VQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK 335 (1018)
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence 77777777778888888888888888888888888888888776432 66788888888888888888888888888
Q ss_pred cCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC----ChHHHHHHHHHHHhccCCCch
Q 003557 154 CDPRF-LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN----MLPAAASYYKATLAVTTGLSA 228 (811)
Q Consensus 154 ~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~~l~~~~~~~~ 228 (811)
.++++ .-.++.+|..++..|+++.|..+|++.++..|++.++...+|.+|...+ ..++|..++.++++..|.+..
T Consensus 336 ~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~ 415 (1018)
T KOG2002|consen 336 ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSE 415 (1018)
T ss_pred cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHH
Confidence 88877 6677888888888888888888888888888888888888888887775 567788888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCc----
Q 003557 229 PFNNLAVIYKQQGNYADAISCYNEVLRI-----DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI-----RPTM---- 294 (811)
Q Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---- 294 (811)
+|..++.++....-+.. +..|..++.. .+--++.++++|..++..|++++|...|.+++.. +++.
T Consensus 416 a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 416 AWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence 88888888765544444 7777777633 3344678888888888888888888888888765 2221
Q ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHH
Q 003557 295 -AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEG 357 (811)
Q Consensus 295 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~ 357 (811)
....+++|.++...++++.|.+.|+.+++..|.+.+++..++-.....+...++...+..+..
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 235788888888888888888888888888888888888777444444555555554444433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-24 Score=249.81 Aligned_cols=340 Identities=14% Similarity=0.044 Sum_probs=297.3
Q ss_pred CCCCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCC---HHH-------------------------HHHHHHH
Q 003557 1 MRKGRLNEAAQCCRQALALNPL---LVDAHSNLGNLMKAQGL---VQE-------------------------AYSCYLE 49 (811)
Q Consensus 1 l~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~g~---~~~-------------------------A~~~~~~ 49 (811)
+++|++++|..+|+++....++ +......++.+|...+. ..+ +...+.+
T Consensus 387 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (987)
T PRK09782 387 MQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVR 466 (987)
T ss_pred HHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHH
Confidence 4689999999999999885322 12233477777776644 222 3334445
Q ss_pred HHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhH
Q 003557 50 ALRIQPT--FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIA 127 (811)
Q Consensus 50 al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 127 (811)
++...|. ++.+|+.+|.++.. ++..+|+..+.+++...|++. ....++..+...|++++|+..|+++....|....
T Consensus 467 al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a 544 (987)
T PRK09782 467 LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNED 544 (987)
T ss_pred hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHH
Confidence 5556677 89999999999987 899999999999999999764 4666778888999999999999999887777667
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Q 003557 128 FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 207 (811)
Q Consensus 128 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 207 (811)
+..++.++...|++++|+.+++++++.+|+....+..++......|++++|+..|+++++.+|+ +.++.++|.++.+.|
T Consensus 545 ~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG 623 (987)
T PRK09782 545 LLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC
Confidence 8899999999999999999999999999999888888777778889999999999999999996 999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003557 208 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRA 287 (811)
Q Consensus 208 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 287 (811)
++++|+..|++++..+|+++.++.++|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++
T Consensus 624 ~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 624 NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCC
Q 003557 288 ITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCS 344 (811)
Q Consensus 288 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 344 (811)
++.+|++..+....|.+.....+++.|.+.+++....+|+.. +....+..+...++
T Consensus 704 l~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~~~~ 759 (987)
T PRK09782 704 IDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTANNN 759 (987)
T ss_pred HhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccccchHhhhccc
Confidence 999999999999999999999999999999999999999876 54444444444443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-24 Score=234.10 Aligned_cols=357 Identities=19% Similarity=0.229 Sum_probs=241.5
Q ss_pred CCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----CHHHH
Q 003557 3 KGRLNEAAQCCRQALALNPLL-VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG----DLNRA 77 (811)
Q Consensus 3 ~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A 77 (811)
+|+|++|..+|.++++.++++ .-.++.+|..+...|+++.|..+|+++++..|++.++...+|.+|...+ ..++|
T Consensus 320 ~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a 399 (1018)
T KOG2002|consen 320 QGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKA 399 (1018)
T ss_pred hccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence 456666666666666555555 4555556666666666666666666666666666666666666555553 44555
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCChhHHHhHHHHHHHcCCHHHHHHHHHHH
Q 003557 78 LQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT------RPNAIAFGNLASTYYERGQADMAILYYKQA 151 (811)
Q Consensus 78 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~la~~~~~~g~~~~A~~~~~~a 151 (811)
..+..++++..|.+.++|..++.++....-+.. +.+|.+++.. .+.++.++++|..++..|++.+|...|.++
T Consensus 400 ~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 400 SNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 555555555556666666666655544333333 6666665532 122666777777777777777777777777
Q ss_pred HHc-----CCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003557 152 IGC-----DPRF-----LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 221 (811)
Q Consensus 152 l~~-----~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 221 (811)
+.. +++. ....++++.++-..++++.|.+.|..+++.+|...+++..+|.+....++..+|..+++.++.
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 644 1221 224677777777777777777777777777777777777777666667777777777777777
Q ss_pred ccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH------------hCCHHHHHHHHHHH
Q 003557 222 VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP--LAADGLVNRGNTYKE------------IGRVTDAIQDYIRA 287 (811)
Q Consensus 222 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~------------~g~~~~A~~~~~~a 287 (811)
.+..++.++..+|.++....++..|.+-|+..++.-. .++.++..+|+++.+ .+.+++|++.|.++
T Consensus 559 ~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 559 IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777666665555544321 345556666665543 25677888888888
Q ss_pred HhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHHH
Q 003557 288 ITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIR 360 (811)
Q Consensus 288 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l~~ 360 (811)
++.+|.|..+-+.+|.++...|++.+|+.+|.++.+.-.++.++|.|+++++..+|+|..|.+.|+.+.+-+-
T Consensus 639 L~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 639 LRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred HhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8889988888888999999999999999999988888777888889999999888888888888877766443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-23 Score=230.91 Aligned_cols=296 Identities=19% Similarity=0.156 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----hhHHHhHHHH
Q 003557 60 AWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-----AIAFGNLAST 134 (811)
Q Consensus 60 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~la~~ 134 (811)
..+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+. ...+..+|.+
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 34444555666666666666666666666666666666666666666666666666666553221 2345666667
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHHcCCh
Q 003557 135 YYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP-----QALTNLGNIYMEWNML 209 (811)
Q Consensus 135 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~ 209 (811)
|...|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|.+. ..+..++.++...|++
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 77777777777777777666666666677777777777777777777777766655542 2345667777777777
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003557 210 PAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA-ADGLVNRGNTYKEIGRVTDAIQDYIRAI 288 (811)
Q Consensus 210 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al 288 (811)
++|+..++++++..|++...+..+|.++.+.|++++|++.++++++.+|.+ ..++..++.+|...|++++|+..+++++
T Consensus 197 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 197 DAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777766654 3456677777777777777777777777
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhhh--cCChhhHhHHHHHHH
Q 003557 289 TIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQC--VCSWEDRDRMFSEVE 356 (811)
Q Consensus 289 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~~~~~~a~~~~~~a~ 356 (811)
+..|+... +..++.++.+.|++++|+..++++++..|++......+...+.. .|+..++...+++..
T Consensus 277 ~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 277 EEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 77776543 36777777777777777777777777777765433222222211 235555555444443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-23 Score=209.13 Aligned_cols=333 Identities=18% Similarity=0.196 Sum_probs=271.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-----------------------------HHc
Q 003557 21 PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLF-----------------------------MES 71 (811)
Q Consensus 21 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-----------------------------~~~ 71 (811)
..+...++..|.++.+.|....|+..|..++...|-+..+|..|+.+. ...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 346778889999999999999999999999998888877777666543 233
Q ss_pred CCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHH
Q 003557 72 GDLNRALQYYKEAVKL-KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYK 149 (811)
Q Consensus 72 g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~ 149 (811)
.+.++++.-++..... .|.+...-...|.+...+.++++|+..|+...+.+|- ..-.-...++++-.++-.+-.-+..
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence 3455555555555555 5666666677777777777777777777777777775 4444444555555554444444445
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchH
Q 003557 150 QAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP 229 (811)
Q Consensus 150 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 229 (811)
.+.+++.-.+++...+|+.|...++.++|+.+|+++++++|+...+|..+|.-|.++++...|++.|+++++.+|.+-.+
T Consensus 321 ~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA 400 (559)
T KOG1155|consen 321 NVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA 400 (559)
T ss_pred HHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH
Confidence 55566666667777788888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC
Q 003557 230 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 309 (811)
Q Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 309 (811)
|+.+|+.|.-++...=|+-+|+++.+..|+++..|..+|.||.+.++.++|+++|++++.....+..++..||.+|.+++
T Consensus 401 WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 401 WYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELK 480 (559)
T ss_pred HhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred CHHHHHHHHHHHHh-------cCCCChHHHHHHHHHhhhcCChhhHhHHHH
Q 003557 310 HVEAAIKSYKQALL-------LRPDFPEATCNLLHTLQCVCSWEDRDRMFS 353 (811)
Q Consensus 310 ~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 353 (811)
+.++|..+|++.++ .+|+-..+..-|+.-..++++|++|.....
T Consensus 481 d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 481 DLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred hHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 99999999999998 455555666667777788888877765433
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-22 Score=238.49 Aligned_cols=377 Identities=13% Similarity=0.086 Sum_probs=307.6
Q ss_pred CCCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHH
Q 003557 2 RKGRLNEAAQCCRQALALN-PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP-TFAIAWSNLAGLFMESGDLNRALQ 79 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~ 79 (811)
+.|++++|.++|+++.+.. ..+...|..+...|.+.|+.++|.++|+++.+... .+..+|..+...|.+.|++++|.+
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 4688899999999988765 33678889999999999999999999999987643 257889999999999999999999
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----hCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHc
Q 003557 80 YYKEAVKLK-PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ----TRPNAIAFGNLASTYYERGQADMAILYYKQAIGC 154 (811)
Q Consensus 80 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 154 (811)
.|+++.+.. ..+..+|..+...|.+.|++++|.++|+++.. ..|+..+|..+...|.+.|++++|.++|+++.+.
T Consensus 529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999997653 23467899999999999999999999999875 3677888999999999999999999999999876
Q ss_pred C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-CCCchHHH
Q 003557 155 D-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-TGLSAPFN 231 (811)
Q Consensus 155 ~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~ 231 (811)
+ +.+...|..+...|.+.|++++|.++|+++.+.. ..+..++..+...|.+.|++++|.++++++.+.. +.+...++
T Consensus 609 gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyn 688 (1060)
T PLN03218 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688 (1060)
T ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 5 3456789999999999999999999999998763 2246788889999999999999999999998765 45677899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHhCC
Q 003557 232 NLAVIYKQQGNYADAISCYNEVLRID-PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR-PTMAEAHANLASAYKDSG 309 (811)
Q Consensus 232 ~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g 309 (811)
.+...|.+.|++++|.++|+++.+.. ..+...|..+...|.+.|++++|.++|+++.+.. ..+...|..+...+.+.|
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999887642 3457789999999999999999999999987653 234567888889999999
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCChhhHh------------------HHHHHHHHHHHHHhcccCCCCC
Q 003557 310 HVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRD------------------RMFSEVEGIIRRQVNMSVLPSV 371 (811)
Q Consensus 310 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~------------------~~~~~a~~l~~~~~~~~~~p~~ 371 (811)
++++|.++++++.+.........++.+..++. +.++++. ....+|..++++|++.|+.|+.
T Consensus 769 ~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~-~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 769 DADVGLDLLSQAKEDGIKPNLVMCRCITGLCL-RRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 99999999999998876655544444333221 1222222 2345789999999999999999
Q ss_pred CccccccC
Q 003557 372 QPFHAIAY 379 (811)
Q Consensus 372 ~~~~~l~~ 379 (811)
.+|..++.
T Consensus 848 ~T~~~vL~ 855 (1060)
T PLN03218 848 EVLSQVLG 855 (1060)
T ss_pred HHHHHHHH
Confidence 99887763
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-23 Score=228.05 Aligned_cols=299 Identities=17% Similarity=0.159 Sum_probs=266.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHH
Q 003557 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF----PDAYLNLG 99 (811)
Q Consensus 24 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la 99 (811)
....+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 44566779999999999999999999999999999999999999999999999999999999864332 25788999
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHcC
Q 003557 100 NVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL-----EAYNNLGNALKDVG 173 (811)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g 173 (811)
.+|...|++++|+..|+++++..|. ..++..++.++...|++++|++.++++++..|.+. ..+..+|.++...|
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999998887 88899999999999999999999999998877653 35678899999999
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC-chHHHHHHHHHHHcCCHHHHHHHHHH
Q 003557 174 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGL-SAPFNNLAVIYKQQGNYADAISCYNE 252 (811)
Q Consensus 174 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (811)
++++|+..|+++++..|++..++..+|.++...|++++|++.++++++.+|.+ ...+..++.+|...|++++|+..+++
T Consensus 195 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 195 DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988876 45678899999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh--CCCHHHHHHHHHHHHh
Q 003557 253 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD--SGHVEAAIKSYKQALL 323 (811)
Q Consensus 253 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 323 (811)
+++..|+... +..++.++.+.|++++|+..++++++..|++......++..+.. .|+..+|+..++++++
T Consensus 275 ~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 275 ALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 9999997754 48999999999999999999999999999988655445444422 5688999998888875
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-23 Score=210.31 Aligned_cols=336 Identities=18% Similarity=0.229 Sum_probs=280.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003557 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 103 (811)
Q Consensus 24 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 103 (811)
+..+-..|+-++..|+|++|+++|.+++++.|+.+..|.+++.||...|++++.++...++++++|+...+++..+.++.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 44677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHH------------------HHHHhh--------------C---CCh---hHHH----------------
Q 003557 104 ALGMPQEAIMCY------------------QRAVQT--------------R---PNA---IAFG---------------- 129 (811)
Q Consensus 104 ~~g~~~~A~~~~------------------~~al~~--------------~---p~~---~~~~---------------- 129 (811)
.+|++.+|+.-. ++.++. . |+. .+|+
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 999998887533 122210 0 110 0111
Q ss_pred ----hHHHH--HHHcC---CHHHHHHHHHHHHHcC----CCc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003557 130 ----NLAST--YYERG---QADMAILYYKQAIGCD----PRF---------LEAYNNLGNALKDVGRVDEAIQCYNQCLS 187 (811)
Q Consensus 130 ----~la~~--~~~~g---~~~~A~~~~~~al~~~----p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 187 (811)
.+... +...+ .|.+|...+.+..... ..+ ..++...|..++-.|++-.|.+.|+++++
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 11111 11112 4566666665554211 111 45677788888999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 003557 188 LQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNR 267 (811)
Q Consensus 188 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 267 (811)
++|.+...|..++.+|...++.++-...|.++..++|.++.+|+..|.+++-.+++++|+.-|++++.++|++...+..+
T Consensus 355 l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl 434 (606)
T KOG0547|consen 355 LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQL 434 (606)
T ss_pred cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC------ChHHHHHHHHHhhh
Q 003557 268 GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD------FPEATCNLLHTLQC 341 (811)
Q Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~ 341 (811)
+.+.+++++++++...|+.+.+..|+.++++...|.++..++++++|.+.|++++++.|. ++..+.+.+.+...
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q 514 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ 514 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999 55544444444333
Q ss_pred cCChhhHhHHHHHHHHHHHHHhcc
Q 003557 342 VCSWEDRDRMFSEVEGIIRRQVNM 365 (811)
Q Consensus 342 ~~~~~~a~~~~~~a~~l~~~~~~~ 365 (811)
|. +.+.++..++++.++.
T Consensus 515 ---wk---~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 515 ---WK---EDINQAENLLRKAIEL 532 (606)
T ss_pred ---hh---hhHHHHHHHHHHHHcc
Confidence 44 4567777777776654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-22 Score=232.50 Aligned_cols=358 Identities=14% Similarity=0.091 Sum_probs=297.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 003557 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 80 (811)
Q Consensus 1 l~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 80 (811)
+++|+++.|+..|+++++.+|++......++.++...|+.++|+..+++++...|........+|.++...|++++|++.
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 36899999999999999999998655458888889999999999999999944455556666668899999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Q 003557 81 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE 160 (811)
Q Consensus 81 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 160 (811)
|+++++.+|+++.++..++..+...++.++|++.++++...+|+...+..++.++...++..+|++.++++++.+|++.+
T Consensus 125 y~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e 204 (822)
T PRK14574 125 WQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEE 204 (822)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999999999999999999998555566666776678887799999999999999888
Q ss_pred HHHHHHHHHHHcCCHHH------------------------------------------------HHHHHHHHHhc---C
Q 003557 161 AYNNLGNALKDVGRVDE------------------------------------------------AIQCYNQCLSL---Q 189 (811)
Q Consensus 161 ~~~~la~~~~~~g~~~~------------------------------------------------A~~~~~~al~~---~ 189 (811)
.+..+..++.+.|-... |+..+++++.. .
T Consensus 205 ~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~ 284 (822)
T PRK14574 205 VLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKD 284 (822)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCC
Confidence 77766665555443322 23333333331 1
Q ss_pred CC---------------------------------------ChHHHHHHHHHHHHcCChHHHHHHHHHHHhccC------
Q 003557 190 PS---------------------------------------HPQALTNLGNIYMEWNMLPAAASYYKATLAVTT------ 224 (811)
Q Consensus 190 p~---------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~------ 224 (811)
|. ...+....|..|...++.++|+.+|+.++...+
T Consensus 285 p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~ 364 (822)
T PRK14574 285 PEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNS 364 (822)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCC
Confidence 21 112445678889999999999999999987653
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003557 225 GLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP---------------LAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 289 (811)
Q Consensus 225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (811)
........|...|...+++++|..++++..+..| +..+....++.++...|++.+|++.+++.+.
T Consensus 365 ~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~ 444 (822)
T PRK14574 365 DDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS 444 (822)
T ss_pred cchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2233357788999999999999999999988433 3356788899999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHH
Q 003557 290 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 358 (811)
Q Consensus 290 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l 358 (811)
..|.|..++..+|.++...|++.+|.+.++.+..++|++..+...++.....+++|.+|....+.+.+.
T Consensus 445 ~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 445 TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999988877777664
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-22 Score=204.00 Aligned_cols=324 Identities=19% Similarity=0.245 Sum_probs=286.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHH-----------------------------HHHHcCCHHHHHHHHHHHHHh
Q 003557 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGN-----------------------------LMKAQGLVQEAYSCYLEALRI 53 (811)
Q Consensus 3 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~-----------------------------~~~~~g~~~~A~~~~~~al~~ 53 (811)
.|....|+..|..++...|-+-.+|..++. ++....+.++++.-++.....
T Consensus 177 ~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~ 256 (559)
T KOG1155|consen 177 LGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSV 256 (559)
T ss_pred hchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567788888888888877776666655543 344445667777777777776
Q ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhH
Q 003557 54 -QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNL 131 (811)
Q Consensus 54 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~l 131 (811)
.|++...-...|.+.+...++++|+..|+...+.+|-..+-.....++++-.++-.+---+.+.+.+++.- +++...+
T Consensus 257 gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiI 336 (559)
T KOG1155|consen 257 GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCII 336 (559)
T ss_pred cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeee
Confidence 78888888899999999999999999999999999987777777777777776666655566667777666 8888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHH
Q 003557 132 ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 211 (811)
Q Consensus 132 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 211 (811)
|+.|...++.++|+.+|+++++++|....+|..+|.-|..+++...|++.|+.+++++|.+-.+|+.+|+.|..++...-
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~Y 416 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFY 416 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--
Q 003557 212 AASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT-- 289 (811)
Q Consensus 212 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-- 289 (811)
|+-+|+++.+..|.+...|..||.+|.+.++.++|+++|.+++..+..+..++..+|.+|.+.++..+|..+|++.++
T Consensus 417 aLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 417 ALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988899999999999999999999999999998
Q ss_pred -----cCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 003557 290 -----IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 326 (811)
Q Consensus 290 -----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 326 (811)
..|+...+...|+.-+.+.+++++|..+..+++.-++
T Consensus 497 ~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 497 ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 3566677888899999999999999999888876643
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-22 Score=233.36 Aligned_cols=346 Identities=15% Similarity=0.117 Sum_probs=264.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Q 003557 23 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP-TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP-TFPDAYLNLGN 100 (811)
Q Consensus 23 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~ 100 (811)
+...|..+...+.+.|++++|.++|+++.+... .+...|..+...|.+.|+.++|.+.|+++.+... .+..+|..+..
T Consensus 436 d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~ 515 (1060)
T PLN03218 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 345666677777788888888888888777542 2467788888888888888888888888877643 35678888888
Q ss_pred HHHHcCChHHHHHHHHHHHhh--CCChhHHHhHHHHHHHcCCHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHcCC
Q 003557 101 VYKALGMPQEAIMCYQRAVQT--RPNAIAFGNLASTYYERGQADMAILYYKQAIG----CDPRFLEAYNNLGNALKDVGR 174 (811)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~ 174 (811)
.|.+.|++++|+++|+++.+. .|+..+|..+...|.+.|++++|.+++.++.. ..|+ ..+|..+...|.+.|+
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCC
Confidence 888888888888888888664 56678888888888888888888888888865 2454 4578888888888888
Q ss_pred HHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 003557 175 VDEAIQCYNQCLSLQ-PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-TGLSAPFNNLAVIYKQQGNYADAISCYNE 252 (811)
Q Consensus 175 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (811)
+++|.++|+++.+.+ +.+...|..+...|.+.|++++|.++|+++.+.. ..+...|..+...|.+.|++++|.+++++
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 888888888888765 4466788888888888888888888888887663 23466788888888888888888888888
Q ss_pred HHhcC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-C
Q 003557 253 VLRID-PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI--RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD-F 328 (811)
Q Consensus 253 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~ 328 (811)
+.+.. +.+...+..+...|.+.|++++|.++|+++.+. .| +...|..+...|.+.|++++|.++|+++.+.+-. +
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 88764 346778888888888888888888888887654 34 4567888888888888888888888888766433 3
Q ss_pred hHHHHHHHHHhhhcCChhhHhHHHHHHHHHHHHHhcccCCCCCCccccc
Q 003557 329 PEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAI 377 (811)
Q Consensus 329 ~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l~~~~~~~~~~p~~~~~~~l 377 (811)
...+..++..+...|+ ++++.+++.+|.+.|+.|+..+|..+
T Consensus 754 ~~Ty~sLL~a~~k~G~-------le~A~~l~~~M~k~Gi~pd~~tynsL 795 (1060)
T PLN03218 754 TITYSILLVASERKDD-------ADVGLDLLSQAKEDGIKPNLVMCRCI 795 (1060)
T ss_pred HHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3455556666665555 45566677777778888888776655
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=195.41 Aligned_cols=316 Identities=20% Similarity=0.230 Sum_probs=286.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 003557 20 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLG 99 (811)
Q Consensus 20 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 99 (811)
+|.+++-.+.+|..++..|++..|+..|..+++.+|++..+++..|.+|+.+|+..-|+..+.+.+++.|+...+....|
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCC----hhHHH------------hHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 003557 100 NVYKALGMPQEAIMCYQRAVQTRPN----AIAFG------------NLASTYYERGQADMAILYYKQAIGCDPRFLEAYN 163 (811)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 163 (811)
.++.++|++++|..-|+.+++.+|+ .++.. .....+...|+...|+.+....+++.|-+...+.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 9999999999999999999999885 22222 2344556779999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHH-----------
Q 003557 164 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNN----------- 232 (811)
Q Consensus 164 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~----------- 232 (811)
..+.+|...|+...|+.-++.+-++..++.+.++.++.+++..|+.+.++...+++++++|+....+-.
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987654321
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 003557 233 -LAVIYKQQGNYADAISCYNEVLRIDPLAAD----GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD 307 (811)
Q Consensus 233 -la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 307 (811)
-+....+.++|.++++..++.++.+|..+. ....+..|+..-|++.+|+..+.++++++|++.+++...+.+|.-
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 134456778999999999999999988543 455678889999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCChHHHHHH
Q 003557 308 SGHVEAAIKSYKQALLLRPDFPEATCNL 335 (811)
Q Consensus 308 ~g~~~~A~~~~~~al~~~p~~~~~~~~l 335 (811)
...|+.|+..|+++.+.++++..+.-.+
T Consensus 354 dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred hHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 9999999999999999999998876654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-21 Score=211.15 Aligned_cols=345 Identities=19% Similarity=0.218 Sum_probs=283.8
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003557 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYK 82 (811)
Q Consensus 3 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 82 (811)
.|++++|..++.++++++|.+..+|+.+|.+|.++|+.+++...+-.+-.++|++...|..++....++|++++|.-+|.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------hhHHHhHHHHHHHcCCHHHHHHHHHHHHHc--
Q 003557 83 EAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN------AIAFGNLASTYYERGQADMAILYYKQAIGC-- 154 (811)
Q Consensus 83 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 154 (811)
++++.+|.+....+..+.+|.+.|+...|...|.++++..|. .......+..+...++-+.|++.++.++..
T Consensus 232 rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 232 RAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999994 334445577888888889999999999873
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC--------------------------ChHH-HHHHHHHHHH
Q 003557 155 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL--QPS--------------------------HPQA-LTNLGNIYME 205 (811)
Q Consensus 155 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~--------------------------~~~~-~~~la~~~~~ 205 (811)
+....+.+..++.++....+++.|.......... .++ +..+ ...++.+..+
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~ 391 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLK 391 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhccc
Confidence 3334456788999999999999999888776551 111 1112 3344444444
Q ss_pred cCChHHHHHHHHHHHhccC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Q 003557 206 WNMLPAAASYYKATLAVTT-GLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP-LAADGLVNRGNTYKEIGRVTDAIQD 283 (811)
Q Consensus 206 ~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~ 283 (811)
.++..+++..+..--...+ +....+..++.+|...|++.+|+.++..+....+ ++...|+.+|.||..+|.+++|++.
T Consensus 392 ~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 392 ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 4455555544433222223 4567899999999999999999999999987754 3467999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCh---------HHHHHHHHHhhhcCChhh
Q 003557 284 YIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP---------EATCNLLHTLQCVCSWED 347 (811)
Q Consensus 284 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~l~~~~~~~~~~~~ 347 (811)
|++++...|++.++...|+.++.++|+.++|.+.+++...-++.+. .........+...|+.++
T Consensus 472 y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 472 YEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 9999999999999999999999999999999999999773332221 233445555666666554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-21 Score=200.46 Aligned_cols=341 Identities=21% Similarity=0.316 Sum_probs=287.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 003557 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 80 (811)
Q Consensus 1 l~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 80 (811)
+..|+|+.|+.+|.+++.++|.|...|.....+|..+|+|++|++--.+.++++|+-+..|..+|..+.-+|+|++|+..
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcC-----------------Ch----HHHHHHHHHHH---hh---------------
Q 003557 81 YKEAVKLKPTFPDAYLNLGNVYKALG-----------------MP----QEAIMCYQRAV---QT--------------- 121 (811)
Q Consensus 81 ~~~al~~~p~~~~~~~~la~~~~~~g-----------------~~----~~A~~~~~~al---~~--------------- 121 (811)
|.+.++.+|++...+..++.++.... +. -.....|...+ +.
T Consensus 93 y~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m 172 (539)
T KOG0548|consen 93 YSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLM 172 (539)
T ss_pred HHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHH
Confidence 99999999999998888887773220 00 00000111110 00
Q ss_pred --------------------------CC------------C----------hhHHHhHHHHHHHcCCHHHHHHHHHHHHH
Q 003557 122 --------------------------RP------------N----------AIAFGNLASTYYERGQADMAILYYKQAIG 153 (811)
Q Consensus 122 --------------------------~p------------~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 153 (811)
+| + ......+|...+...++..|++.|..++.
T Consensus 173 ~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~e 252 (539)
T KOG0548|consen 173 KADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALE 252 (539)
T ss_pred HHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 11 0 11345689999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-------HHHHHHHHHHHHcCChHHHHHHHHHHHhccCC-
Q 003557 154 CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP-------QALTNLGNIYMEWNMLPAAASYYKATLAVTTG- 225 (811)
Q Consensus 154 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~- 225 (811)
++ .+...+.+.+.+|...|.+.+.+....++++...... .+...+|..|...++++.|+.+|++++.....
T Consensus 253 l~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~ 331 (539)
T KOG0548|consen 253 LA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTP 331 (539)
T ss_pred Hh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCH
Confidence 99 8888899999999999999999999999888765432 23444677888889999999999998865322
Q ss_pred -------------------------CchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHH
Q 003557 226 -------------------------LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDA 280 (811)
Q Consensus 226 -------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 280 (811)
-..--..-|..+++.|+|..|+..|.++++.+|+++..|.+.|.||.++|++..|
T Consensus 332 ~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~a 411 (539)
T KOG0548|consen 332 DLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEA 411 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHH
Confidence 1222334588899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhc
Q 003557 281 IQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCV 342 (811)
Q Consensus 281 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 342 (811)
++..+++++++|+...+|..-|.++..+.+|++|.+.|+++++.+|++.++...+..+...+
T Consensus 412 L~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 412 LKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998887777666643
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-21 Score=197.66 Aligned_cols=330 Identities=21% Similarity=0.273 Sum_probs=287.2
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-----------------CHHHHHHHHHHHHH----------hCC
Q 003557 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG-----------------LVQEAYSCYLEALR----------IQP 55 (811)
Q Consensus 3 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-----------------~~~~A~~~~~~al~----------~~p 55 (811)
..+.++|...|.+++..++.+.+++..+....+-.- ...+-++.+-++.. ..+
T Consensus 154 l~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~ 233 (611)
T KOG1173|consen 154 LDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNE 233 (611)
T ss_pred hccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCc
Confidence 457889999999999999888777666544432211 11111111111110 112
Q ss_pred --------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hh
Q 003557 56 --------TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AI 126 (811)
Q Consensus 56 --------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~ 126 (811)
++.......+..++..+++.+..+.++..++.+|-+...+-....++...|+..+-..+-.++.+..|+ +.
T Consensus 234 ~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~ 313 (611)
T KOG1173|consen 234 DESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKAL 313 (611)
T ss_pred hhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCc
Confidence 346788888999999999999999999999999998887766666999999999999899999999999 99
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Q 003557 127 AFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW 206 (811)
Q Consensus 127 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 206 (811)
.|+..|..|...|++++|..+|.++..++|....+|...|..+...|..++|+..|..+-++.|........+|.-|...
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRT 393 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred CChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----C---CCHHHHHHHHHHHHHhCCHHH
Q 003557 207 NMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID----P---LAADGLVNRGNTYKEIGRVTD 279 (811)
Q Consensus 207 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p---~~~~~~~~la~~~~~~g~~~~ 279 (811)
++++-|.++|.+++.+.|.++..+..+|.+.+..+.|.+|..+|+.+++.- + .-...+.++|.++.+++++++
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 999999999999999999999999999999999999999999999998432 1 123468999999999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHH
Q 003557 280 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 332 (811)
Q Consensus 280 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 332 (811)
|+..|++++.+.|.++.++..+|.+|..+|+++.|++.|.+++.++|++..+.
T Consensus 474 AI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~ 526 (611)
T KOG1173|consen 474 AIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFIS 526 (611)
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHH
Confidence 99999999999999999999999999999999999999999999999986544
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-21 Score=229.08 Aligned_cols=343 Identities=13% Similarity=0.111 Sum_probs=271.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C-----------------------
Q 003557 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP--T----------------------- 56 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~----------------------- 56 (811)
+.|++++|.++|+++.+ | +..+|..+...|.+.|++++|+++|+++.+... +
T Consensus 170 k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l 246 (697)
T PLN03081 170 KCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL 246 (697)
T ss_pred cCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHH
Confidence 46778888888887743 2 456788888888888888888888888765421 1
Q ss_pred -----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CC
Q 003557 57 -----------FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT--RP 123 (811)
Q Consensus 57 -----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p 123 (811)
+..++..+...|.+.|++++|.+.|+++. +.+..+|..+...|.+.|++++|+++|+++.+. .|
T Consensus 247 ~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 23345667778888888888888888764 345678888888888888888888888888764 56
Q ss_pred ChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 003557 124 NAIAFGNLASTYYERGQADMAILYYKQAIGCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNI 202 (811)
Q Consensus 124 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 202 (811)
+..++..+...+.+.|++++|.+.+..+++.. +.+..++..+...|.+.|++++|.+.|+++.+ .+..+|..+...
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~ 400 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAG 400 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHH
Confidence 67788888888888888888888888888664 44556788888888888999999888887754 356788888889
Q ss_pred HHHcCChHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhCCHHH
Q 003557 203 YMEWNMLPAAASYYKATLAVT-TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP--LAADGLVNRGNTYKEIGRVTD 279 (811)
Q Consensus 203 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~ 279 (811)
|.+.|+.++|+++|+++.+.. ..+..++..+...+.+.|+.++|.++|+.+.+... .+...|..+...|.+.|++++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 999999999999999887653 34566788888888899999999999988876432 345678888999999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCChhhHhHHHHHH
Q 003557 280 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEV 355 (811)
Q Consensus 280 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a 355 (811)
|.+.++++ ...|+ ..+|..+...+...|+++.|...+++++++.|++...+..++..+...|+|++|.+.++++
T Consensus 481 A~~~~~~~-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 481 AYAMIRRA-PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred HHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99988764 23443 5679999999999999999999999999999999888999999999999988877665543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-20 Score=197.00 Aligned_cols=350 Identities=15% Similarity=0.074 Sum_probs=317.7
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003557 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYK 82 (811)
Q Consensus 3 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 82 (811)
.+.++-|+.+|..+++..|.....|...+..-..-|..++-..++++++...|.....|...+..+...|+...|..++.
T Consensus 529 ~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~ 608 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILD 608 (913)
T ss_pred cchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHH
Confidence 45677789999999999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Q 003557 83 EAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAY 162 (811)
Q Consensus 83 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 162 (811)
++++.+|++.++|+.-..+.....+++.|..+|.++....|...+|+.-+.....+++.++|+.+++++++..|+....|
T Consensus 609 ~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~ 688 (913)
T KOG0495|consen 609 QAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLW 688 (913)
T ss_pred HHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCC
Q 003557 163 NNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242 (811)
Q Consensus 163 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~ 242 (811)
..+|+++.++++.+.|.+.|...++..|..+..|..++.+-...|+.-.|...++++.-.+|++...|.....+-.+.|+
T Consensus 689 lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn 768 (913)
T KOG0495|consen 689 LMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGN 768 (913)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 003557 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 322 (811)
Q Consensus 243 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 322 (811)
.+.|.....++++..|.+...|..-..+.-.-++-.+++. +++....++.++...|.++....++++|.++|.+++
T Consensus 769 ~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~D----ALkkce~dphVllaia~lfw~e~k~~kar~Wf~Rav 844 (913)
T KOG0495|consen 769 KEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSID----ALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAV 844 (913)
T ss_pred HHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHH----HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888877777666666555544 444456778899999999999999999999999999
Q ss_pred hcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHH
Q 003557 323 LLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVE 356 (811)
Q Consensus 323 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~ 356 (811)
+.+|++.++|..+.......|.-++....+....
T Consensus 845 k~d~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 845 KKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred ccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999998888888887666655554443
|
|
| >PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=209.79 Aligned_cols=325 Identities=12% Similarity=0.088 Sum_probs=199.4
Q ss_pred EeeecCCCCCChhHhhHHHHhcccCCCCeEEEEEecCCCCChHHHH------HHHhccCceEECCCCCHHHHHHHHHhCC
Q 003557 428 VGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQ------RTQSEAEHFVDVSAMSSDMIAKLINEDK 501 (811)
Q Consensus 428 vg~~s~~~~~h~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 501 (811)
|-.+...+.......|+.+-++. ++++++.|+.-+.. .+.. .++....+.-++-.-+...++..|++.+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~~r 280 (578)
T PRK15490 206 VELIIRSLTPELRQDFFLKEVLE---EQVEVLEIAKITGN--LFDDATIESPELRLLLSHLPPVCKYGIKHLVPHLCERK 280 (578)
T ss_pred eeEEEeecCcccCcchhHHHHHh---cCCceEEeeccchh--hhhhccccchHHHHHHhcCChHHHHHHHHHHHHHHHcC
Confidence 33444545444334455444442 66788877644321 1111 1222221111111123578999999999
Q ss_pred CeEEEeCCCCCCCcchhhhh---cCC--CceEEecc-ccCCCCCCCcc----------c--EEEecCccCCcCC-C----
Q 003557 502 IQILINLNGYTKGARNEIFA---MQP--APIQVSYM-GFPGTTGASYI----------D--YLVTDEFVSPLRY-A---- 558 (811)
Q Consensus 502 ~dilv~~~~~~~~~~~~~~~---~r~--Apvq~~~~-g~~~t~g~~~~----------d--~~~~d~~~~p~~~-~---- 558 (811)
+||+ ||+..+..+++ .+. .||.++.. |++...+-..+ + +..+| ++.-... .
T Consensus 281 pDIV-----Ht~~~~a~l~g~laA~lagvpviv~~~h~~~~~~~~r~~~~e~~~~~~a~~i~~~sd-~v~~s~~v~~~l~ 354 (578)
T PRK15490 281 LDYL-----SVWQDGACLMIALAALIAGVPRIQLGLRGLPPVVRKRLFKPEYEPLYQALAVVPGVD-FMSNNHCVTRHYA 354 (578)
T ss_pred CCEE-----EEcCcccHHHHHHHHHhcCCCEEEEeecccCCcchhhHHHHHHHHhhhhceeEecch-hhhccHHHHHHHH
Confidence 9999 99877664443 333 46665542 33322221100 1 12223 2222211 1
Q ss_pred ---CCCccceEEcCCccccCCCccccccCCCCCCC-CCcC--CCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcC
Q 003557 559 ---HIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQ-PKRS--DYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVP 630 (811)
Q Consensus 559 ---~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~-~~r~--~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p 630 (811)
..-.+++..+|+..-...+. +....+ ..|. ..+++++.+++|+++|+ .|....+++++.++++..|
T Consensus 355 ~~lgip~~KI~VIyNGVD~~rf~------p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~p 428 (578)
T PRK15490 355 DWLKLEAKHFQVVYNGVLPPSTE------PSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAARYLQHHP 428 (578)
T ss_pred HHhCCCHHHEEEEeCCcchhhcC------ccchhhHHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHHHHhHCC
Confidence 11245666666644322111 110000 1222 34566777888988876 5999999999999999999
Q ss_pred CeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccC
Q 003557 631 NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPL 709 (811)
Q Consensus 631 ~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g 709 (811)
+.+|+|+|+|+. ++.+++.++++|+ .++|+|+|.. .+...+|+.+|||+.|+.++| |++++|||++|+|||+
T Consensus 429 dirLvIVGdG~~-~eeLk~la~elgL-~d~V~FlG~~--~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVA--- 501 (578)
T PRK15490 429 ATRFVLVGDGDL-RAEAQKRAEQLGI-LERILFVGAS--RDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVIS--- 501 (578)
T ss_pred CeEEEEEeCchh-HHHHHHHHHHcCC-CCcEEECCCh--hhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCCEEE---
Confidence 999999999876 7889999999999 5999999963 455666899999999999999 9999999999999994
Q ss_pred CccccchhH--HHHHhcCCCCcccc--CCHHHHHH---HHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 003557 710 EKMATRVAG--SLCLATGLGEEMIV--NSMKEYEE---RAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 782 (811)
Q Consensus 710 ~~~~~r~~~--~~l~~~g~~~~~v~--~~~~~y~~---~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 782 (811)
+++|. .++.. |..+ +++ .|++++.+ .+.++..+...+..++++.++.. ...|+.+.++.+++++|
T Consensus 502 ----TdvGG~~EiV~d-G~nG-~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V--~e~FS~e~Mv~~y~ki~ 573 (578)
T PRK15490 502 ----TPAGGSAECFIE-GVSG-FILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFL--QERFTVEHMVGTFVKTI 573 (578)
T ss_pred ----eCCCCcHHHccc-CCcE-EEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhCCHHHHHHHHHHHH
Confidence 55551 11111 3333 332 23334333 34555555565666778888876 45699999999999998
Q ss_pred HH
Q 003557 783 FK 784 (811)
Q Consensus 783 ~~ 784 (811)
..
T Consensus 574 ~~ 575 (578)
T PRK15490 574 AS 575 (578)
T ss_pred Hh
Confidence 53
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-21 Score=192.81 Aligned_cols=355 Identities=20% Similarity=0.218 Sum_probs=257.7
Q ss_pred CCCCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 003557 1 MRKGRLNEAAQCCRQALALNPL-----LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN 75 (811)
Q Consensus 1 l~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 75 (811)
+++.+|.+|+++|+-++..-|. ....+..+|..+.+.|+|+.|+..|+...+..|+.. +-++|..+++..|+-+
T Consensus 248 ~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d~e 326 (840)
T KOG2003|consen 248 FKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGDAE 326 (840)
T ss_pred eehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCcHH
Confidence 3567788888888888887765 234667778888888888888888888888888754 4455667777788888
Q ss_pred HHHHHHHHHHhcC--------------CCCH-------------------------------------------------
Q 003557 76 RALQYYKEAVKLK--------------PTFP------------------------------------------------- 92 (811)
Q Consensus 76 ~A~~~~~~al~~~--------------p~~~------------------------------------------------- 92 (811)
+-.+.|.+++.+- |++.
T Consensus 327 kmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcl 406 (840)
T KOG2003|consen 327 KMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCL 406 (840)
T ss_pred HHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHH
Confidence 8888888876541 1100
Q ss_pred -------------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hhHHHhHHHHHHHc--CCHHHHHHHHHHHHHcC
Q 003557 93 -------------DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYER--GQADMAILYYKQAIGCD 155 (811)
Q Consensus 93 -------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~ 155 (811)
+.-.+.+-.|.+.|+++.|++.++-.-+.+.. ..+-.+|..+++.+ .++..|..+...++.++
T Consensus 407 e~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d 486 (840)
T KOG2003|consen 407 ESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID 486 (840)
T ss_pred HHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc
Confidence 01123344567778888888877665554433 44555666665553 35666777777777777
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHH
Q 003557 156 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAV 235 (811)
Q Consensus 156 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~ 235 (811)
..++.+..+.|.+.+..|++++|.+.|++++..+....++++++|..+..+|+.++|+++|-++-.+--++.+++..++.
T Consensus 487 ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qian 566 (840)
T KOG2003|consen 487 RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIAN 566 (840)
T ss_pred ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77777777777777777888888888888877777777778888888888888888888877777777777777777888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHH
Q 003557 236 IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 315 (811)
Q Consensus 236 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 315 (811)
+|..+.+..+|++++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-......|.+.+..-+|+..|....-.++|+
T Consensus 567 iye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai 646 (840)
T KOG2003|consen 567 IYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAI 646 (840)
T ss_pred HHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHH
Confidence 88888888888888888777778888888888888888888888887777777777877777777887777777778888
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHH
Q 003557 316 KSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVE 356 (811)
Q Consensus 316 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~ 356 (811)
.+|+++--+.|+........+.++.+.|+++.|...|...-
T Consensus 647 ~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 647 NYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 88888777777766555556666777777776665555443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-20 Score=181.37 Aligned_cols=300 Identities=22% Similarity=0.263 Sum_probs=269.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 003557 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 81 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 81 (811)
..|++..|+..|..+++.+|++..+++..|.+|...|+-.-|+.-+.+++++.|+...+....|.+++++|++++|...|
T Consensus 50 a~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF 129 (504)
T KOG0624|consen 50 ARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADF 129 (504)
T ss_pred HhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCHH---H------------HHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHH
Q 003557 82 KEAVKLKPTFPD---A------------YLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAI 145 (811)
Q Consensus 82 ~~al~~~p~~~~---~------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~ 145 (811)
++.++.+|++.. + +......+...|+...|+++....++..|- ...+...+.+|...|+...|+
T Consensus 130 ~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI 209 (504)
T KOG0624|consen 130 DQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAI 209 (504)
T ss_pred HHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHH
Confidence 999999986532 2 233344566779999999999999999997 888889999999999999999
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHH------------HHHHHHHcCChHHHH
Q 003557 146 LYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTN------------LGNIYMEWNMLPAAA 213 (811)
Q Consensus 146 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------------la~~~~~~g~~~~A~ 213 (811)
.-++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++...+-. -+....+.+++.+++
T Consensus 210 ~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cl 289 (504)
T KOG0624|consen 210 HDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECL 289 (504)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999997643321 233455678899999
Q ss_pred HHHHHHHhccCCCchH----HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003557 214 SYYKATLAVTTGLSAP----FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 289 (811)
Q Consensus 214 ~~~~~~l~~~~~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (811)
+..++.++..|..+.. +..+..++...+++.+|++...++++.+|++.+++...+.+|.....|+.|+..|+++.+
T Consensus 290 e~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 290 EAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 9999999999985544 445788889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHH
Q 003557 290 IRPTMAEAHANL 301 (811)
Q Consensus 290 ~~p~~~~~~~~l 301 (811)
.++++..+...+
T Consensus 370 ~n~sn~~~reGl 381 (504)
T KOG0624|consen 370 LNESNTRAREGL 381 (504)
T ss_pred cCcccHHHHHHH
Confidence 999987765544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-20 Score=200.24 Aligned_cols=329 Identities=19% Similarity=0.225 Sum_probs=278.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003557 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 103 (811)
Q Consensus 24 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 103 (811)
...+...|+.++..|++++|...+.++++++|.++.+|+.||.+|.+.|+.+++...+-.|-.++|++.+.|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 45667778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHcCCHHH
Q 003557 104 ALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF-----LEAYNNLGNALKDVGRVDE 177 (811)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~ 177 (811)
++|++++|.-+|.++++.+|. .......+.+|.+.|+...|...|.+++...|.. .......+..+...++-+.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999998 8888999999999999999999999999999832 1234455777888888899
Q ss_pred HHHHHHHHHhcC--CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--C--------------------------CCc
Q 003557 178 AIQCYNQCLSLQ--PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT--T--------------------------GLS 227 (811)
Q Consensus 178 A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~--------------------------~~~ 227 (811)
|.+.++.++... ....+.+..++.++....+++.|........... + .+.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 999999999833 2334577789999999999999998877665510 0 011
Q ss_pred hH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Q 003557 228 AP-FNNLAVIYKQQGNYADAISCYNEVLRIDP-LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT-MAEAHANLASA 304 (811)
Q Consensus 228 ~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 304 (811)
.+ +..++.+..+.++..+++..+..--...+ ++.+.+..++..+...|++.+|+.++..+....+. +..+|+.+|.|
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 22 44455555566666666666544333323 45789999999999999999999999999987653 46799999999
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCChhhHhHHH
Q 003557 305 YKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMF 352 (811)
Q Consensus 305 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 352 (811)
|..+|.+++|+++|++++...|++.++...|+.++...|+.++|...+
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL 506 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETL 506 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999987554433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-20 Score=185.78 Aligned_cols=342 Identities=21% Similarity=0.247 Sum_probs=296.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CCCc---------
Q 003557 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI--------------QPTF--------- 57 (811)
Q Consensus 1 l~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------------~p~~--------- 57 (811)
++.|+|+.|+..|+.+.+..|+...+ +.+..+++..|+-++-.+.|.+++.+ +|++
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~-~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAA-LNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhh-hhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 46899999999999999999975544 56677888899999999999988764 1111
Q ss_pred -----------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003557 58 -----------------------------------------------------AIAWSNLAGLFMESGDLNRALQYYKEA 84 (811)
Q Consensus 58 -----------------------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~a 84 (811)
.+.-...+..+++.|+++.|++.++-.
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 000112344567889999999988766
Q ss_pred HhcCCCCH-HHHHHHHHHHHHc--CChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Q 003557 85 VKLKPTFP-DAYLNLGNVYKAL--GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE 160 (811)
Q Consensus 85 l~~~p~~~-~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 160 (811)
-+.+.... .+-.+|..+++.+ .++..|..+...++..+.- +.+..+.|.+.+..|++++|.+.|++++..+....+
T Consensus 446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 55544332 3455666666664 3688999999999988765 888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHc
Q 003557 161 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 240 (811)
Q Consensus 161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 240 (811)
+++++|..+..+|+.++|+++|-+.-.+--++.++++.++.+|..+.+..+|++++.++...-|+++.++..|+.+|-+.
T Consensus 526 alfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 526 ALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQE 605 (840)
T ss_pred HHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcc
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 003557 241 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 320 (811)
Q Consensus 241 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 320 (811)
|+-.+|.+++-......|.+.+..-.+|..|....-.++|+.+|+++--+.|+.......++.|+.+.|+|.+|.+.|+.
T Consensus 606 gdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred cchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCChHHHHHHHHHhhhcC
Q 003557 321 ALLLRPDFPEATCNLLHTLQCVC 343 (811)
Q Consensus 321 al~~~p~~~~~~~~l~~~~~~~~ 343 (811)
.-...|.+.+.+.-|....-.+|
T Consensus 686 ~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 686 IHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHhCccchHHHHHHHHHhcccc
Confidence 99999999988777766554444
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-20 Score=225.56 Aligned_cols=375 Identities=13% Similarity=0.071 Sum_probs=265.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHH
Q 003557 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI--QPTFAIAWSNLAGLFMESGDLNRALQ 79 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~ 79 (811)
+.|++++|..+|+++.+ .+...|..+...|.+.|++++|+++|.++... .|+ ..++..+...+...|+.+.|.+
T Consensus 234 k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd-~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 234 KCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD-LMTITSVISACELLGDERLGRE 309 (857)
T ss_pred cCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChHHHHH
Confidence 45667777777776643 23456777777777777777777777776653 333 4556666666677777777777
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHc--CC
Q 003557 80 YYKEAVKLK-PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGC--DP 156 (811)
Q Consensus 80 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p 156 (811)
.+..+.+.. ..+..++..+...|.+.|++++|.++|+++. .|+..+|+.+...|.+.|++++|++.|+++.+. .|
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P 387 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence 777766643 2345677777777777777777777777763 355667777777777777777777777776543 35
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHH
Q 003557 157 RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP-SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAV 235 (811)
Q Consensus 157 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~ 235 (811)
+.. .+..+...+.+.|++++|.++++.+.+... .+..++..+...|.+.|++++|.+.|+++.+ .+...|+.+..
T Consensus 388 d~~-t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~ 463 (857)
T PLN03077 388 DEI-TIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIA 463 (857)
T ss_pred Cce-eHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHH
Confidence 443 556666677777777777777777776543 2455677777778888888888887776543 34566777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHhCCCHHHH
Q 003557 236 IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR-PTMAEAHANLASAYKDSGHVEAA 314 (811)
Q Consensus 236 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A 314 (811)
.|.+.|+.++|+.+|+++....+.+...+..+...+.+.|+.+.+.+.+..+++.. ..+...+..+...|.+.|+.++|
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHH
Confidence 77788888888888877776555566666666677777777777777777776653 23344667788889999999999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHHHHHhcccCCCCCCccccccCCCCHHHHHHHHHHHH
Q 003557 315 IKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYA 394 (811)
Q Consensus 315 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~ 394 (811)
.+.|+++ +.+...|..++..+...|+.+ +|.+++++|.+.|+.||..+|..++..|+..+.++.+.++-
T Consensus 544 ~~~f~~~----~~d~~s~n~lI~~~~~~G~~~-------~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 544 WNQFNSH----EKDVVSWNILLTGYVAHGKGS-------MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred HHHHHhc----CCChhhHHHHHHHHHHcCCHH-------HHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHH
Confidence 9988876 456677888888888777754 45667777777899999999999888888888888888776
Q ss_pred Hhh
Q 003557 395 SHC 397 (811)
Q Consensus 395 ~~~ 397 (811)
+.+
T Consensus 613 ~~M 615 (857)
T PLN03077 613 HSM 615 (857)
T ss_pred HHH
Confidence 654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-20 Score=217.97 Aligned_cols=375 Identities=13% Similarity=0.055 Sum_probs=312.1
Q ss_pred CCCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHH
Q 003557 2 RKGRLNEAAQCCRQALALN--PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI--QPTFAIAWSNLAGLFMESGDLNRA 77 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A 77 (811)
+.|++++|+++|+.+.... +.+..++..+..++.+.++++.|.+++..+.+. .| +...+..+...|.+.|++++|
T Consensus 99 ~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A 177 (697)
T PLN03081 99 ACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDA 177 (697)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHH
Confidence 4689999999999997654 346788999999999999999999999988874 45 478899999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003557 78 LQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR--PNAIAFGNLASTYYERGQADMAILYYKQAIGCD 155 (811)
Q Consensus 78 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 155 (811)
.+.|+++.+ .+...|..+...|.+.|++++|+++|+++.+.. |+..++..+...+...|..+.+.+++..+.+..
T Consensus 178 ~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g 254 (697)
T PLN03081 178 RRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG 254 (697)
T ss_pred HHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC
Confidence 999999864 346789999999999999999999999998764 457788888899999999999999988887553
Q ss_pred -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-CCCchHHHHH
Q 003557 156 -PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-TGLSAPFNNL 233 (811)
Q Consensus 156 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~l 233 (811)
..+..++..+...|.+.|++++|.+.|+++. +.+..+|..+...|.+.|++++|.++|+++.+.. ..+..++..+
T Consensus 255 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~l 331 (697)
T PLN03081 255 VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331 (697)
T ss_pred CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 2345688899999999999999999998763 4577899999999999999999999999997654 3466789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHH
Q 003557 234 AVIYKQQGNYADAISCYNEVLRID-PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 312 (811)
Q Consensus 234 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 312 (811)
...+.+.|++++|.+.+..+++.. +.+..++..+...|.+.|++++|.+.|+++.+ .+..+|+.+...|.+.|+.+
T Consensus 332 l~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~ 408 (697)
T PLN03081 332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGT 408 (697)
T ss_pred HHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHH
Confidence 999999999999999999998876 56778899999999999999999999998764 35668999999999999999
Q ss_pred HHHHHHHHHHhcCCCCh-HHHHHHHHHhhhcCChhhHhHHHHHHHHHHHHHhc-ccCCCCCCccccccCCCCHHHHHHHH
Q 003557 313 AAIKSYKQALLLRPDFP-EATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVN-MSVLPSVQPFHAIAYPIDPMLALEIS 390 (811)
Q Consensus 313 ~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~a~~~~~~a~~l~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~~ 390 (811)
+|++.|+++.+.+.... ..+..++..+...|..++ +.+++++|.+ .++.|+..+|.++...+...+.++.+
T Consensus 409 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~-------a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ-------GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHH-------HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999998765433 445556666766666554 5556666654 48889988888887666666666665
Q ss_pred HHH
Q 003557 391 RKY 393 (811)
Q Consensus 391 ~~~ 393 (811)
.++
T Consensus 482 ~~~ 484 (697)
T PLN03081 482 YAM 484 (697)
T ss_pred HHH
Confidence 554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-22 Score=209.13 Aligned_cols=269 Identities=22% Similarity=0.306 Sum_probs=106.1
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 003557 18 ALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR-I-QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAY 95 (811)
Q Consensus 18 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 95 (811)
+..|. . ..+.++.++...|++++|++.+.+.+. . .|++...|..+|.+....+++++|+..|+++++.++.++..+
T Consensus 4 ~~~~~-~-~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~ 81 (280)
T PF13429_consen 4 EFGPS-E-EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDY 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc-c-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34455 2 334668888888999999988866544 3 477888888888888888888999999988888888888888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHcC
Q 003557 96 LNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCD--PRFLEAYNNLGNALKDVG 173 (811)
Q Consensus 96 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g 173 (811)
..++.+ ...+++++|+.+++++.+..++...+.....++...++++++...++++.... +.+...+..+|.++.+.|
T Consensus 82 ~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G 160 (280)
T PF13429_consen 82 ERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG 160 (280)
T ss_dssp -------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC
T ss_pred cccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 788777 68888888888888888777666777777788888888888888888876544 567778888888888888
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003557 174 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV 253 (811)
Q Consensus 174 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 253 (811)
+.++|++.|+++++.+|+++.+...++.++...|+.+++.+.++...+..|.++..+..+|.++...|++++|+.+|+++
T Consensus 161 ~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccc
Confidence 88888888888888888888888888888888888888777777777777777777777788888888888888888888
Q ss_pred HhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003557 254 LRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 289 (811)
Q Consensus 254 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (811)
++.+|+++..+..+|.++...|+.++|..+++++++
T Consensus 241 ~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 241 LKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccc
Confidence 877787787777788888888887777777777654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-20 Score=191.77 Aligned_cols=282 Identities=21% Similarity=0.300 Sum_probs=261.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 003557 22 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 101 (811)
Q Consensus 22 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 101 (811)
++.+.....+..++..+++.+..+.++..++.+|-+...+-....++.+.|+..+-...-.++.+..|+.+-.|+..|..
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 46778888999999999999999999999999999887776666699999999998888899999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 003557 102 YKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 180 (811)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 180 (811)
|...|++.+|..+|.++..++|. ..+|...|..+...|..++|+..|..|-+..|....-...+|.-|...++++-|.+
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999999988888899999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccC-------CCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003557 181 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT-------GLSAPFNNLAVIYKQQGNYADAISCYNEV 253 (811)
Q Consensus 181 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 253 (811)
+|.+++.+.|.++-++..+|.+.+..+.+.+|..+|++++..-+ .....+.+||.++.+.+++++|+..++++
T Consensus 402 Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 402 FFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999984321 23456899999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 003557 254 LRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 303 (811)
Q Consensus 254 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 303 (811)
+.+.|.++.++..+|.+|..+|+++.|++.|.+++.++|++..+-..|+.
T Consensus 482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999998755555543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.6e-20 Score=188.78 Aligned_cols=331 Identities=24% Similarity=0.350 Sum_probs=276.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 003557 27 HSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 106 (811)
Q Consensus 27 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 106 (811)
....|+..+..|+|+.|+.+|..++.++|.|...|.+...+|..+|+|++|++--.+..+++|+-+..|..+|..+..+|
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCH------------------------HHHHHHHHHHHHc-------
Q 003557 107 MPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQA------------------------DMAILYYKQAIGC------- 154 (811)
Q Consensus 107 ~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~------------------------~~A~~~~~~al~~------- 154 (811)
+|++|+..|.+.++.+|+ ...+..++.++...... +.+.....+.+..
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999999999999998 66667777666221000 0000000000000
Q ss_pred ----------------------------------CCC---------------------cHHHHHHHHHHHHHcCCHHHHH
Q 003557 155 ----------------------------------DPR---------------------FLEAYNNLGNALKDVGRVDEAI 179 (811)
Q Consensus 155 ----------------------------------~p~---------------------~~~~~~~la~~~~~~g~~~~A~ 179 (811)
.|. .......+|....+..+++.|+
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 110 0113567899999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCch-------HHHHHHHHHHHcCCHHHHHHHHHH
Q 003557 180 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA-------PFNNLAVIYKQQGNYADAISCYNE 252 (811)
Q Consensus 180 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~ 252 (811)
+.|.++++++ .+...+.+.+.+|+..|.+.+.+....++++....... ....+|..|.+.++++.|+.+|++
T Consensus 245 q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 245 QHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 9999999999 88899999999999999999999988888876544322 233466778888999999999999
Q ss_pred HHhcC--------------------------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 003557 253 VLRID--------------------------PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 306 (811)
Q Consensus 253 al~~~--------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 306 (811)
++... |.-..--...|..++..|+|..|+..|.++++.+|+++..|.+.|.||.
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~ 403 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL 403 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 87653 2223334556889999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHH
Q 003557 307 DSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 358 (811)
Q Consensus 307 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l 358 (811)
++|++..|++..+++++++|++..++..-+.++..+.+|+.+...|.+++++
T Consensus 404 kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 404 KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999988888887664
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7e-20 Score=219.78 Aligned_cols=377 Identities=12% Similarity=0.072 Sum_probs=313.3
Q ss_pred CCCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHH
Q 003557 2 RKGRLNEAAQCCRQALALN-PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ-PTFAIAWSNLAGLFMESGDLNRALQ 79 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~ 79 (811)
+.|++++|+++|+++.+.. ..+..++..+...+...|+.+.|.+.+..+.+.. +.+..++..+...|.+.|++++|.+
T Consensus 265 ~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~ 344 (857)
T PLN03077 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344 (857)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHH
Confidence 5799999999999998764 2356788888999999999999999999988753 3357899999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCC-
Q 003557 80 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT--RPNAIAFGNLASTYYERGQADMAILYYKQAIGCDP- 156 (811)
Q Consensus 80 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p- 156 (811)
.|+++.. .+...|..+...|.+.|++++|+++|+++.+. .|+..++..+...+...|++++|.+++..+.+...
T Consensus 345 vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~ 421 (857)
T PLN03077 345 VFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI 421 (857)
T ss_pred HHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCC
Confidence 9999753 35678999999999999999999999998765 57788888888999999999999999999987643
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHH
Q 003557 157 RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVI 236 (811)
Q Consensus 157 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 236 (811)
.+..++..+...|.+.|++++|.+.|+++.+ .+...|..+...|...|+.++|+.+|+++....+.+..++..+...
T Consensus 422 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a 498 (857)
T PLN03077 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSA 498 (857)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHH
Confidence 3456889999999999999999999998653 4567899999999999999999999999987767778888888899
Q ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHH
Q 003557 237 YKQQGNYADAISCYNEVLRID-PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 315 (811)
Q Consensus 237 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 315 (811)
+.+.|+.+.+.+.+..+++.. ..+...+..+...|.+.|+.++|.+.|++. +.+..+|+.+...|.+.|+.++|+
T Consensus 499 ~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~ 574 (857)
T PLN03077 499 CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAV 574 (857)
T ss_pred HhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHH
Confidence 999999999999999988764 334557778889999999999999999886 456789999999999999999999
Q ss_pred HHHHHHHhcCCCCh-HHHHHHHHHhhhcCChhhHhHHHHHHHHHHHHHh-cccCCCCCCccccccCCCCHHHHHHHHHHH
Q 003557 316 KSYKQALLLRPDFP-EATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQV-NMSVLPSVQPFHAIAYPIDPMLALEISRKY 393 (811)
Q Consensus 316 ~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~a~~~~~~a~~l~~~~~-~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~ 393 (811)
+.|+++.+.+.... ..+..++..+...|.+ +++.+++++|. ..++.|+..+|.++...+...+.++.+.++
T Consensus 575 ~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v-------~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~ 647 (857)
T PLN03077 575 ELFNRMVESGVNPDEVTFISLLCACSRSGMV-------TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNF 647 (857)
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHhhcChH-------HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999998654433 3344555666665654 45556666666 458889988888877666666666666555
Q ss_pred HH
Q 003557 394 AS 395 (811)
Q Consensus 394 ~~ 395 (811)
-+
T Consensus 648 ~~ 649 (857)
T PLN03077 648 IN 649 (857)
T ss_pred HH
Confidence 33
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-19 Score=185.54 Aligned_cols=329 Identities=14% Similarity=0.083 Sum_probs=307.3
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003557 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYK 82 (811)
Q Consensus 3 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 82 (811)
.|..++-..++++++...|.....|...+..+...|+...|...+.++++.+|++.+.|+....+.....+++.|..+|.
T Consensus 563 hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred cCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 36677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Q 003557 83 EAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEA 161 (811)
Q Consensus 83 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 161 (811)
++....|. ..+|+.-+.....+++.++|+.+++++++..|+ ...|..+|+++.++++.+.|.+.|...++..|.....
T Consensus 643 kar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipL 721 (913)
T KOG0495|consen 643 KARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPL 721 (913)
T ss_pred HHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchH
Confidence 99987765 578888999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcC
Q 003557 162 YNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQG 241 (811)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 241 (811)
|..++.+-.+.|+.-.|...++++.-.+|++...|.....+-.+.|+.+.|...+.++++..|.+...|..-..+.-.-+
T Consensus 722 WllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 722 WLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888877777777
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 003557 242 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 321 (811)
Q Consensus 242 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 321 (811)
+-..++..+ +....++..+...|.++....++++|.++|+++++.+|++.++|..+-..+...|.-++-.+++.++
T Consensus 802 rkTks~DAL----kkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 802 RKTKSIDAL----KKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred cchHHHHHH----HhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 755555544 4456788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCChHHHHHHH
Q 003557 322 LLLRPDFPEATCNLL 336 (811)
Q Consensus 322 l~~~p~~~~~~~~l~ 336 (811)
....|.+.+.|....
T Consensus 878 ~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 878 ETAEPTHGELWQAVS 892 (913)
T ss_pred hccCCCCCcHHHHHh
Confidence 999999998876553
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-19 Score=203.15 Aligned_cols=328 Identities=13% Similarity=0.020 Sum_probs=229.6
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003557 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 83 (811)
Q Consensus 4 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 83 (811)
|+.++|+..+++++...|.....+..+|.++...|++++|++.|+++++.+|+++.++..++..+...++.++|++.+++
T Consensus 82 G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~ 161 (822)
T PRK14574 82 GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATE 161 (822)
T ss_pred CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 55555555555555222333333333345555555555555555555555555555555555555555555555555555
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHH----------------------------
Q 003557 84 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLAST---------------------------- 134 (811)
Q Consensus 84 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~---------------------------- 134 (811)
+.+.+|.+... ..++.++...++..+|++.++++++.+|+ ...+..+..+
T Consensus 162 l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~ 240 (822)
T PRK14574 162 LAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQ 240 (822)
T ss_pred hcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHH
Confidence 55555553332 33344444444444455555555555554 3333333222
Q ss_pred -------------------------------------------------------------HHHcCCHHHHHHHHHHHHH
Q 003557 135 -------------------------------------------------------------YYERGQADMAILYYKQAIG 153 (811)
Q Consensus 135 -------------------------------------------------------------~~~~g~~~~A~~~~~~al~ 153 (811)
+...+++.++++.|+.+..
T Consensus 241 l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 241 LERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 3334444444444444432
Q ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CChHHHHHHHHHHHHcCChHHHHHHHHHHHhccC--
Q 003557 154 CD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP------SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT-- 224 (811)
Q Consensus 154 ~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-- 224 (811)
.. +-...+....|..|...++.++|+.+|++++...+ .+......|...|...+++++|..++++..+..|
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~ 400 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQ 400 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcE
Confidence 22 11233566778999999999999999999988653 2333457788899999999999999999988544
Q ss_pred -------------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 003557 225 -------------GLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR 291 (811)
Q Consensus 225 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 291 (811)
+.......++.++...|++.+|++.+++.+...|.+...+..+|.++...|.+.+|.+.++.+..++
T Consensus 401 ~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~ 480 (822)
T PRK14574 401 VGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLA 480 (822)
T ss_pred EeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Confidence 2234566789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHH
Q 003557 292 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 332 (811)
Q Consensus 292 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 332 (811)
|++..+...++.++..+|++.+|....+++++..|+++.+.
T Consensus 481 P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 481 PRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 99999999999999999999999999999999999998543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.2e-19 Score=191.29 Aligned_cols=292 Identities=14% Similarity=0.009 Sum_probs=133.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCh
Q 003557 30 LGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP-DAYLNLGNVYKALGMP 108 (811)
Q Consensus 30 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~ 108 (811)
.|......|+++.|.+.+.++.+..|+....+...|.++...|+++.|..+++++.+..|++. .+....+.++...|++
T Consensus 90 ~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 90 EALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCH
Confidence 344444455555555555555554444444444445555555555555555555554444443 2333345555555555
Q ss_pred HHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH----HHHHHHHHcCCHHHHHHHHH
Q 003557 109 QEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYN----NLGNALKDVGRVDEAIQCYN 183 (811)
Q Consensus 109 ~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~~A~~~~~ 183 (811)
++|...++++.+..|+ ..++..++.++...|++++|.+.+.+..+....+...+. .....+...+..+++.+.+.
T Consensus 170 ~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 170 HAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 5555555555555554 444555555555555555555555555443222221111 11111122222233333444
Q ss_pred HHHhcCC----CChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHH--HHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 003557 184 QCLSLQP----SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPF--NNLAVIYKQQGNYADAISCYNEVLRID 257 (811)
Q Consensus 184 ~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (811)
++.+..| +++..+..++..+...|++++|.+.++++++..|++.... ..........++.+++++.++++++..
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 4444443 2444555555555555555555555555555544443321 111111222344445555555555555
Q ss_pred CCCH--HHHHHHHHHHHHhCCHHHHHHHHH--HHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 003557 258 PLAA--DGLVNRGNTYKEIGRVTDAIQDYI--RAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 322 (811)
Q Consensus 258 p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 322 (811)
|+++ ..+..+|+++.+.|++++|.++|+ ++++..|+... +..+|.++.+.|+.++|.++|++++
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555 444455555555555555555555 34444444332 3345555555555555555555443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=180.89 Aligned_cols=272 Identities=23% Similarity=0.248 Sum_probs=239.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC---CC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHH
Q 003557 67 LFMESGDLNRALQYYKEAVKLK---PT-------FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYY 136 (811)
Q Consensus 67 ~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~ 136 (811)
+++..++...|-......++.. |. +......+|.||.++|.+.+|.+.++..++..|-++.+..|+.+|.
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ 267 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQ 267 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHH
Confidence 3455666666665555544432 11 1223467999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHH
Q 003557 137 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYY 216 (811)
Q Consensus 137 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 216 (811)
+..+...|+..+.+.++..|.+...+...+.++..++++++|.++|+.+++.+|.+.++...++.-|+..++.+-|+.+|
T Consensus 268 ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 268 RIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred HhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 003557 217 KATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP---LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 293 (811)
Q Consensus 217 ~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 293 (811)
++.++..-.+++.+.++|.+....++++-++..|++++.... .-.++|+++|.+....|++.-|..+|+-++..+++
T Consensus 348 RRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 348 RRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred HHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence 999999999999999999999999999999999999987643 33679999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 003557 294 MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHT 338 (811)
Q Consensus 294 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 338 (811)
+.+++++||.+-.+.|+.++|..+++.+....|+-.+..+|+...
T Consensus 428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 428 HGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 999999999999999999999999999999999988888877543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.86 E-value=9e-22 Score=204.11 Aligned_cols=261 Identities=22% Similarity=0.289 Sum_probs=114.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHc
Q 003557 62 SNLAGLFMESGDLNRALQYYKEAVKL--KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYER 138 (811)
Q Consensus 62 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~ 138 (811)
..+|.+++..|++++|++.+++.+.. .|+++..|..+|.+....+++++|+..|++++..++. ...+..++.+ ...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 46688999999999999999665544 4788888888999999999999999999999888777 6666677777 688
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHcCChHHHHHHH
Q 003557 139 GQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ--PSHPQALTNLGNIYMEWNMLPAAASYY 216 (811)
Q Consensus 139 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~ 216 (811)
+++++|++++.++.+..++ +..+...+.++...++++++...++++.... +.++..+..+|.++.+.|+.++|+..|
T Consensus 91 ~~~~~A~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGD-PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccccccc-cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8999999988888776543 5566777788888899999999988877654 567788888899999999999999999
Q ss_pred HHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH
Q 003557 217 KATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 296 (811)
Q Consensus 217 ~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 296 (811)
+++++.+|++..+...++.++...|+++++.+.++...+..|.++..+..+|.++..+|++++|+.+|+++++.+|+++.
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 99999999988888888888888898888888888887777778888888899999999999999999999988998898
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 003557 297 AHANLASAYKDSGHVEAAIKSYKQALLL 324 (811)
Q Consensus 297 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 324 (811)
++..+|.++...|+.++|..+++++++.
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 8899999999999999998888887653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-19 Score=191.86 Aligned_cols=288 Identities=11% Similarity=0.039 Sum_probs=246.5
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHH
Q 003557 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA-IAWSNLAGLFMESGDLNRALQY 80 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~ 80 (811)
..|+++.|.+.+.++.+..|+....+...|.++.+.|++++|..++.++.+..|++. .+....+.++...|++++|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 579999999999999999998888889999999999999999999999999988875 4666679999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHH----HhHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003557 81 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAF----GNLASTYYERGQADMAILYYKQAIGCD 155 (811)
Q Consensus 81 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~ 155 (811)
++++.+..|+++.++..++.++...|++++|.+.+.+..+.... ...+ ......+...+..+++.+.+.++.+..
T Consensus 176 l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~ 255 (409)
T TIGR00540 176 VDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ 255 (409)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999987433 2211 122222244455555666788888777
Q ss_pred C----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHH--HHHHHHHHHcCChHHHHHHHHHHHhccCCCc--
Q 003557 156 P----RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL--TNLGNIYMEWNMLPAAASYYKATLAVTTGLS-- 227 (811)
Q Consensus 156 p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-- 227 (811)
| +++..+..++..+...|++++|.+.++++++..|++.... ..........++.+++.+.+++.++..|+++
T Consensus 256 p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~ 335 (409)
T TIGR00540 256 PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKC 335 (409)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhH
Confidence 7 5889999999999999999999999999999999987532 2233333446888999999999999999999
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 003557 228 APFNNLAVIYKQQGNYADAISCYN--EVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 290 (811)
Q Consensus 228 ~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (811)
.....+|.++.+.|++++|.++|+ .+++..|+... +..+|.++.+.|+.++|.++|++++..
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 889999999999999999999999 57778886655 569999999999999999999998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-19 Score=175.49 Aligned_cols=304 Identities=14% Similarity=0.110 Sum_probs=273.7
Q ss_pred HHHHHHcCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 003557 31 GNLMKAQGL--VQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP 108 (811)
Q Consensus 31 ~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 108 (811)
+.+.+..++ +..+..++-.-...-|+|...+..+|.+++..|++.+|+..|+++.-++|.+....-..|.++...|++
T Consensus 203 a~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 203 ALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred HHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCH
Confidence 333344444 445555666666778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003557 109 QEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 187 (811)
Q Consensus 109 ~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 187 (811)
+.-..+....+..... ..-|+.-+...+..+++..|+.+-+++++.+|.+..++...|.++...|+.++|+-.|+.+..
T Consensus 283 e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 283 EQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred hhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 9998888888888754 777888888889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHH-HHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 003557 188 LQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLA-VIYK-QQGNYADAISCYNEVLRIDPLAADGLV 265 (811)
Q Consensus 188 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~ 265 (811)
+.|...+.|..+..+|...|++.+|...-+.+++..|.++.++..+| .++. .-.--++|.+++++++.+.|....+-.
T Consensus 363 Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~ 442 (564)
T KOG1174|consen 363 LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVN 442 (564)
T ss_pred cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHH
Confidence 99999999999999999999999999999999999999999988886 4443 334468999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHH
Q 003557 266 NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335 (811)
Q Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 335 (811)
.++.++...|++++++.++++.+...|+.. .+..||.++...+.+++|.++|..++.++|++..+...+
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 999999999999999999999999998854 899999999999999999999999999999987665443
|
|
| >TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=203.66 Aligned_cols=333 Identities=15% Similarity=0.137 Sum_probs=222.0
Q ss_pred cceEeeecCCCCCChhHhhHHHHhcccCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCC------HHHHHHHHH
Q 003557 425 RLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS------SDMIAKLIN 498 (811)
Q Consensus 425 ~lrvg~~s~~~~~h~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~ 498 (811)
|.+|-++.+.+...++...+..+.+.++..++++.+++.... +.+.+.+......++.+.... ...+.+.|+
T Consensus 1 ~~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~l~ 78 (374)
T TIGR03088 1 RPLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEV--SAFRKRIQRPDVAFYALHKQPGKDVAVYPQLYRLLR 78 (374)
T ss_pred CceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCC--ChhHHHHHhcCceEEEeCCCCCCChHHHHHHHHHHH
Confidence 357899999998888889999999999888888777765432 246666776766666664321 345788899
Q ss_pred hCCCeEEEeCCCCCCCcchh---hhhcC-CCceEE-eccccCCCC--C--CC-----cccEEEecCccCCcCC-CCC---
Q 003557 499 EDKIQILINLNGYTKGARNE---IFAMQ-PAPIQV-SYMGFPGTT--G--AS-----YIDYLVTDEFVSPLRY-AHI--- 560 (811)
Q Consensus 499 ~~~~dilv~~~~~~~~~~~~---~~~~r-~Apvq~-~~~g~~~t~--g--~~-----~~d~~~~d~~~~p~~~-~~~--- 560 (811)
..++||+ |+++.... +++.. .-|+.+ +..|+...+ + .. .+-...+|.+++.++. ...
T Consensus 79 ~~~~Div-----h~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vs~~~~~~~~~ 153 (374)
T TIGR03088 79 QLRPDIV-----HTRNLAALEAQLPAALAGVPARIHGEHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVAVSRDLEDWLRG 153 (374)
T ss_pred HhCCCEE-----EEcchhHHHHHHHHHhcCCCeEEEeecCcccccchhhHHHHHHHHHHHHhcCCeEEEeCHHHHHHHHH
Confidence 9999999 77653211 11211 124322 222211100 0 00 0000122333322222 111
Q ss_pred ----CccceEEcCCccccCCCccccccCCCC-CCCCCcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhcC---
Q 003557 561 ----YSEKLVHVPHCYFVNDYKQKNMDVLDP-NCQPKRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVP--- 630 (811)
Q Consensus 561 ----~~e~~~~lp~~~~~~~~~~~~~~~~~~-~~~~~r~~~gl~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p--- 630 (811)
-.+++..+|++.-... ..+.+ .....+.....+++.+++++++|.. |+.+.+++++.+++++.|
T Consensus 154 ~~~~~~~~~~vi~ngvd~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~ 227 (374)
T TIGR03088 154 PVKVPPAKIHQIYNGVDTER------FHPSRGDRSPILPPDFFADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGA 227 (374)
T ss_pred hcCCChhhEEEeccCccccc------cCCCccchhhhhHhhcCCCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccc
Confidence 1234444554332111 11110 0111222344566778999888774 999999999999998876
Q ss_pred -CeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCccccc
Q 003557 631 -NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLP 708 (811)
Q Consensus 631 -~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~ 708 (811)
+.+|+++|.|+. ++.+++.+++.|+ .++|.|.|. ..+...+++.+|+++.|+.++| |++++|||+||+|||+
T Consensus 228 ~~~~l~i~G~g~~-~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~-- 301 (374)
T TIGR03088 228 ERLRLVIVGDGPA-RGACEQMVRAAGL-AHLVWLPGE--RDDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIA-- 301 (374)
T ss_pred cceEEEEecCCch-HHHHHHHHHHcCC-cceEEEcCC--cCCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEE--
Confidence 679999998876 7789999999999 589999994 4567777899999999988888 9999999999999995
Q ss_pred CCccccchhH--HHHHhcCCCCccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 003557 709 LEKMATRVAG--SLCLATGLGEEMI--VNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 784 (811)
Q Consensus 709 g~~~~~r~~~--~~l~~~g~~~~~v--~~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 784 (811)
+++|. .++.. |..+ ++ .+|++++++.+.++.+|++.+..++++.++.. ...|+.+.++++++++|++
T Consensus 302 -----s~~~g~~e~i~~-~~~g-~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~--~~~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 302 -----TAVGGNPELVQH-GVTG-ALVPPGDAVALARALQPYVSDPAARRAHGAAGRARA--EQQFSINAMVAAYAGLYDQ 372 (374)
T ss_pred -----cCCCCcHHHhcC-CCce-EEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHH
Confidence 44441 11111 3333 33 25899999999999999999999999988876 3469999999999999987
Q ss_pred H
Q 003557 785 M 785 (811)
Q Consensus 785 ~ 785 (811)
+
T Consensus 373 ~ 373 (374)
T TIGR03088 373 L 373 (374)
T ss_pred h
Confidence 5
|
Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-18 Score=184.12 Aligned_cols=356 Identities=22% Similarity=0.222 Sum_probs=283.0
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHH-HHHcCCHHHHHH
Q 003557 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ--PTFAIAWSNLAGL-FMESGDLNRALQ 79 (811)
Q Consensus 3 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~-~~~~g~~~~A~~ 79 (811)
.|+++.+.+.|++++...-...+.|+.++..+...|.-..|+.+.++..... |.++..+...+.+ +.+.+..++++.
T Consensus 336 ~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegld 415 (799)
T KOG4162|consen 336 CGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLD 415 (799)
T ss_pred HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHH
Confidence 4778888888888887766777888888888888888888888888888777 7666666655554 445688888888
Q ss_pred HHHHHHhcCC-----CCHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHH
Q 003557 80 YYKEAVKLKP-----TFPDAYLNLGNVYKALG-----------MPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQAD 142 (811)
Q Consensus 80 ~~~~al~~~p-----~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~ 142 (811)
+..+++.... -.+..+..+|.+|..+- ...++++.++++++.+|+ +.+.+.++.-|...++.+
T Consensus 416 YA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~ 495 (799)
T KOG4162|consen 416 YAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLT 495 (799)
T ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHH
Confidence 8888887421 12446777777765432 235788888888888887 888888888888888888
Q ss_pred HHHHHHHHHHHc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003557 143 MAILYYKQAIGC-DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 221 (811)
Q Consensus 143 ~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 221 (811)
.|..+.+++++. ..++..+|..++.++...+++.+|+.+...+++..++|.........+-...++.++|+......+.
T Consensus 496 sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~ 575 (799)
T KOG4162|consen 496 SALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLA 575 (799)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHH
Confidence 899888888888 5566778888888888888899998888888888777554433333333334444444333222211
Q ss_pred c---------------------------------------------------c-----C------CC-------chHHHH
Q 003557 222 V---------------------------------------------------T-----T------GL-------SAPFNN 232 (811)
Q Consensus 222 ~---------------------------------------------------~-----~------~~-------~~~~~~ 232 (811)
. + | .. ...|..
T Consensus 576 ~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwll 655 (799)
T KOG4162|consen 576 LWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLL 655 (799)
T ss_pred HHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHH
Confidence 1 0 0 00 123556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHH
Q 003557 233 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 312 (811)
Q Consensus 233 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 312 (811)
.+..+.+.++.++|..++.++-.++|..+..|+..|.++...|+.++|.+.|..++.++|+++.....+|.++.+.|+..
T Consensus 656 aa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~ 735 (799)
T KOG4162|consen 656 AADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPR 735 (799)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcc
Confidence 78888899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHH--HHHHHHhcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHH
Q 003557 313 AAIK--SYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 358 (811)
Q Consensus 313 ~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l 358 (811)
.|.. .+..+++++|.++++|+.++..+...|+.++|...|..+.++
T Consensus 736 la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 736 LAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 8888 999999999999999999999999999999999999988876
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.7e-19 Score=198.71 Aligned_cols=248 Identities=17% Similarity=0.094 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHH
Q 003557 74 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL---------GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADM 143 (811)
Q Consensus 74 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~ 143 (811)
+++|+..|+++++.+|+++.++..+|.+|... +++++|+..++++++.+|+ ..++..+|.++...|++++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~ 356 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIV 356 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Confidence 34444444444444444444444444443322 2244555555555555555 5555555555555555555
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Q 003557 144 AILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 223 (811)
Q Consensus 144 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 223 (811)
|+..|+++++++|++..+++.+|.++...|++++|+..++++++++|.++..+..++.++...|++++|+..+++++...
T Consensus 357 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~ 436 (553)
T PRK12370 357 GSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH 436 (553)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555555555555555555555444444444444555555555555555443
Q ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 003557 224 -TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302 (811)
Q Consensus 224 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 302 (811)
|+++..+..+|.++...|++++|...++++....|........++..|...|+ +|...+++.++.......-...+.
T Consensus 437 ~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~ 514 (553)
T PRK12370 437 LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLP 514 (553)
T ss_pred cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHH
Confidence 44455555555555555555555555555555555555555555555555552 444444444433222121222255
Q ss_pred HHHHhCCCHHHHHHHHHHHHhc
Q 003557 303 SAYKDSGHVEAAIKSYKQALLL 324 (811)
Q Consensus 303 ~~~~~~g~~~~A~~~~~~al~~ 324 (811)
.+|.-.|+.+.+..+ +++.+.
T Consensus 515 ~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 515 LVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHhhhHHHHHH-HHhhcc
Confidence 555555665555555 554443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-19 Score=200.86 Aligned_cols=270 Identities=14% Similarity=0.011 Sum_probs=229.2
Q ss_pred hCCCCHH--HHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHH
Q 003557 19 LNPLLVD--AHSNLGNLMKA---QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES---------GDLNRALQYYKEA 84 (811)
Q Consensus 19 ~~p~~~~--~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a 84 (811)
..+.+.+ .++..|..... .+.+++|+..|+++++.+|+++.++..+|.++... +++++|+..++++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 3445444 23444543332 35689999999999999999999999999887644 3489999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 003557 85 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYN 163 (811)
Q Consensus 85 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 163 (811)
++++|+++.++..+|.++...|++++|+..|+++++.+|+ ..+++.+|.++...|++++|+..++++++++|.+...+.
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~ 410 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGI 410 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH
Confidence 9999999999999999999999999999999999999999 889999999999999999999999999999999987777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCC
Q 003557 164 NLGNALKDVGRVDEAIQCYNQCLSLQ-PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242 (811)
Q Consensus 164 ~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~ 242 (811)
.++.++...|++++|+..++++++.. |+++..+..+|.++...|++++|...++++....|........++..|...|+
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 77777888999999999999999875 78889999999999999999999999999988888888889999999988884
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 003557 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR 291 (811)
Q Consensus 243 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 291 (811)
+|...++++++..............++.-.|+-+.+..+ +++.+.+
T Consensus 491 --~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 491 --RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 788888877765433333334478888888888888877 7776654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.8e-18 Score=181.76 Aligned_cols=293 Identities=13% Similarity=0.010 Sum_probs=168.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHcC
Q 003557 28 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAY-LNLGNVYKALG 106 (811)
Q Consensus 28 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~g 106 (811)
+..|......|++++|.+...+..+..+.....+...+....+.|+++.|..++.++.+..|++.... ...+.++...|
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g 167 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARN 167 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCC
Confidence 44455555566666666655554443222222233334444666666667666666666666654322 23366666666
Q ss_pred ChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH--------HHHHHHHHHcCCHHH
Q 003557 107 MPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAY--------NNLGNALKDVGRVDE 177 (811)
Q Consensus 107 ~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--------~~la~~~~~~g~~~~ 177 (811)
++++|+..++++.+.+|+ ..++..++.+|...|++++|++.+.++.+..+.+.... ..+........+-+.
T Consensus 168 ~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~ 247 (398)
T PRK10747 168 ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEG 247 (398)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 666666666666666666 66666666666666666666666666665544432211 111111122223333
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 003557 178 AIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID 257 (811)
Q Consensus 178 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (811)
..+.+++.-+..|+++.+...++..+...|+.++|.+.++++++. +.+.......+.+ ..++.+++++.+++.++.+
T Consensus 248 l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 248 LKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhC
Confidence 333333333344556666666666666666666666666666663 3233322222222 3366666666666666666
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 003557 258 PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL 324 (811)
Q Consensus 258 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 324 (811)
|+++..+..+|.++...|++++|.++|+++++..|++. .+..++.++.+.|+.++|.++|++++.+
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666666666666666666666666666666643 3456666666666666666666666654
|
|
| >PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.1e-20 Score=199.21 Aligned_cols=173 Identities=14% Similarity=0.120 Sum_probs=143.7
Q ss_pred CcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCC
Q 003557 601 DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 678 (811)
Q Consensus 601 ~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 678 (811)
+.+++++++|+ .|+.+.+++++..+.++.|+.+|+++|+|+. ++.+++.++++|+ .++|.|.|..+..+....|+.
T Consensus 221 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~-~~~l~~~~~~~~l-~~~V~~~G~~~~~el~~~l~~ 298 (406)
T PRK15427 221 TPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPW-ERRLRTLIEQYQL-EDVVEMPGFKPSHEVKAMLDD 298 (406)
T ss_pred CCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchh-HHHHHHHHHHcCC-CCeEEEeCCCCHHHHHHHHHh
Confidence 44677778876 4999999999999988889999999999986 7889999999999 689999999999999999999
Q ss_pred CcEEecCCC------CCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCcccc--CCHHHHHHHHHHHhc-C
Q 003557 679 ADLFLDTPL------CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLAL-D 748 (811)
Q Consensus 679 ~Dv~ld~~~------~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~--~~~~~y~~~~~~l~~-d 748 (811)
+|+|+-|+. ++| |++++|||++|+|||+........ ++.. |.++ ++. .|++++++.+.+|.+ |
T Consensus 299 aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E-----~v~~-~~~G-~lv~~~d~~~la~ai~~l~~~d 371 (406)
T PRK15427 299 ADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPE-----LVEA-DKSG-WLVPENDAQALAQRLAAFSQLD 371 (406)
T ss_pred CCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchh-----hhcC-CCce-EEeCCCCHHHHHHHHHHHHhCC
Confidence 999999975 366 999999999999999543222111 1111 3333 332 489999999999999 9
Q ss_pred HHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 003557 749 RQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 784 (811)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 784 (811)
++.+.+|+++.|+.. ...|+.+.+++++++.|++
T Consensus 372 ~~~~~~~~~~ar~~v--~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 372 TDELAPVVKRAREKV--ETDFNQQVINRELASLLQA 405 (406)
T ss_pred HHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHhh
Confidence 999999999999887 4469999999999999976
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-17 Score=180.16 Aligned_cols=284 Identities=9% Similarity=0.062 Sum_probs=233.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHcCCHHHHHHH
Q 003557 3 KGRLNEAAQCCRQALALNPLLVDAHSNL-GNLMKAQGLVQEAYSCYLEALRIQPTFAIAW-SNLAGLFMESGDLNRALQY 80 (811)
Q Consensus 3 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l-~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~g~~~~A~~~ 80 (811)
.|+|++|.+.+.+..+..+ ++..++.+ +....+.|++++|..++.++.+.+|++..+. ...+.++...|++++|+..
T Consensus 97 eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6999999988888765433 34444444 6666999999999999999999999985433 3458999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hh--------HHHhHHHHHHHcCCHHHHHHHHHHH
Q 003557 81 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AI--------AFGNLASTYYERGQADMAILYYKQA 151 (811)
Q Consensus 81 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~--------~~~~la~~~~~~g~~~~A~~~~~~a 151 (811)
++++.+.+|+++.++..++.+|...|++++|++.+.++.+..+. .. ++..+........+.+...+.++..
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999887553 11 2222222233334445555555555
Q ss_pred HHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHH
Q 003557 152 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFN 231 (811)
Q Consensus 152 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 231 (811)
-+..|+++.+...++..+...|+.++|.+.++++++. +.++......+.+ ..++.+++++.+++.++..|+++..+.
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l 332 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWS 332 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHH
Confidence 5566789999999999999999999999999999995 4455544444443 459999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 003557 232 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR 291 (811)
Q Consensus 232 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 291 (811)
.+|.++...+++++|.+.|+++++..|++. .+..++.++.+.|+.++|.++|++++.+.
T Consensus 333 ~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 333 TLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999998754 46689999999999999999999998753
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.8e-18 Score=167.37 Aligned_cols=293 Identities=15% Similarity=0.114 Sum_probs=267.7
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 003557 9 AAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 88 (811)
Q Consensus 9 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 88 (811)
+..++-.-...-|+|...+..+|.+++..|++.+|+..|+++...+|.+..+.-..|..+...|+++.-...-...+...
T Consensus 217 ~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~ 296 (564)
T KOG1174|consen 217 QTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV 296 (564)
T ss_pred hHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh
Confidence 34444455556799999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 003557 89 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN 167 (811)
Q Consensus 89 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 167 (811)
.....-|+.-+...+..+++..|+.+-+++++.+|. ..++...|..+...++.++|+-.|+.+..+.|...+.|..+..
T Consensus 297 ~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~h 376 (564)
T KOG1174|consen 297 KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFH 376 (564)
T ss_pred hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 777888888999999999999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHH-HHHH-HcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHH
Q 003557 168 ALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG-NIYM-EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYAD 245 (811)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~ 245 (811)
+|...|++.+|.-.-+.+++..|.+..++..+| .++. .-.--++|.+++++.+.+.|....+-..++.++...|++++
T Consensus 377 sYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D 456 (564)
T KOG1174|consen 377 SYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKD 456 (564)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccch
Confidence 999999999999999999999999999988886 4443 33456899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 003557 246 AISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302 (811)
Q Consensus 246 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 302 (811)
++.++++.+...|+ ...+..+|.++...+.+++|.+.|..++.++|++..+...+-
T Consensus 457 ~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 457 IIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 99999999998775 567899999999999999999999999999999876655443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-19 Score=170.95 Aligned_cols=273 Identities=20% Similarity=0.243 Sum_probs=246.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC---CC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 003557 32 NLMKAQGLVQEAYSCYLEALRIQ---PT-------FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 101 (811)
Q Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 101 (811)
.+++..++...|-......++.+ |. +.+-...+|.||+++|-+.+|.+.++.+++..|. ++.+..++.+
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskv 265 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKV 265 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHH
Confidence 35566777888777666655532 11 2344567999999999999999999999998764 7899999999
Q ss_pred HHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 003557 102 YKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 180 (811)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 180 (811)
|.+..+.+.|+..+.+.++..|. ...+..++.++..++++++|.++|+.+++.+|.+.++.-.++..|+..++.+-|+.
T Consensus 266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alr 345 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALR 345 (478)
T ss_pred HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHH
Confidence 99999999999999999999998 77888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccC---CCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 003557 181 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT---GLSAPFNNLAVIYKQQGNYADAISCYNEVLRID 257 (811)
Q Consensus 181 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (811)
+|+++++..-.+++.+.++|.+++..++++-++..|++++.... ...++|+++|.+....|++..|..+|+-++..+
T Consensus 346 yYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 346 YYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999997754 246789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 003557 258 PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAY 305 (811)
Q Consensus 258 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 305 (811)
+++.++++++|.+-.+.|+.++|..++..+-...|+-.+..++++.+-
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFMS 473 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEEe
Confidence 999999999999999999999999999999999999888777776543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-17 Score=169.98 Aligned_cols=347 Identities=16% Similarity=0.140 Sum_probs=260.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 003557 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 81 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 81 (811)
..++|.+.++..+++++..|++.+.+...|..+...|+-++|......++..++.....|..+|.++...++|++|+++|
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcC---CC
Q 003557 82 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCD---PR 157 (811)
Q Consensus 82 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~ 157 (811)
+.|+++.|+|...+..++.+..++++++-....-.+.++..|. -..|...+..+...|++..|....+...+.. |+
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s 178 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPS 178 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999999999999998 8889999999999999999999888877543 32
Q ss_pred c-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHH
Q 003557 158 F-----LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNN 232 (811)
Q Consensus 158 ~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 232 (811)
. .++......+..+.|.+++|.+.+.+--...-+........+.++...+++++|...|...+..+|++...+..
T Consensus 179 ~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~ 258 (700)
T KOG1156|consen 179 KEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEG 258 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHH
Confidence 2 12333444555566666666666554433333333444556666677777777777777777777766655444
Q ss_pred HHHHHHHcCCHHHHH-HHHHHHHhc-------------------------------------------------------
Q 003557 233 LAVIYKQQGNYADAI-SCYNEVLRI------------------------------------------------------- 256 (811)
Q Consensus 233 la~~~~~~g~~~~A~-~~~~~al~~------------------------------------------------------- 256 (811)
+-.++.+-.+.-+++ ..|...-+.
T Consensus 259 l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~ 338 (700)
T KOG1156|consen 259 LEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAF 338 (700)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHH
Confidence 444332111111111 111111000
Q ss_pred ------------------C--------CCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhC
Q 003557 257 ------------------D--------PLA--ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 308 (811)
Q Consensus 257 ------------------~--------p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 308 (811)
+ |.. ...++.++.-+...|+++.|..+.+.++...|..++.+..-|+++...
T Consensus 339 le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~ 418 (700)
T KOG1156|consen 339 LEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHA 418 (700)
T ss_pred HHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhc
Confidence 0 111 124556677778888889999999888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCChhhH
Q 003557 309 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDR 348 (811)
Q Consensus 309 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 348 (811)
|++++|..+++.+.+++-.+...-..-+.-+......++|
T Consensus 419 G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA 458 (700)
T KOG1156|consen 419 GLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEA 458 (700)
T ss_pred CChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHH
Confidence 9999999888888888766555444455555554444443
|
|
| >cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=189.33 Aligned_cols=335 Identities=14% Similarity=0.131 Sum_probs=215.4
Q ss_pred eEeeecCCCCCChhHhhHHHHhcccCCCCeEEEEEecCCCCChHHH--HHHHh-c-cCceEECCCCCHHHH----HHH--
Q 003557 427 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWR--QRTQS-E-AEHFVDVSAMSSDMI----AKL-- 496 (811)
Q Consensus 427 rvg~~s~~~~~h~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~--~~~~~-~-~~~~~~~~~~~~~~~----~~~-- 496 (811)
||.++++.+...++.+.+..+.+.+++.+.|+.++...+.++. +. +.+.. . +... .++....... ...
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~-~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~ 78 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEF-FNVTKKFHNALQGADI-ELSEEEKEIYLEWNEENAE 78 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhH-HHHHHHhhHhhcCCCC-CCCHHHHHHHHHHHHHHhc
Confidence 5888999998889999999999999999999998877554321 12 22222 1 1111 2221100111 112
Q ss_pred --HHhCCCeEEEeCCCCCCCcch---hhhhcC-CCceEEeccccCCCCC----------CCcccEEEecCccCCcCCCCC
Q 003557 497 --INEDKIQILINLNGYTKGARN---EIFAMQ-PAPIQVSYMGFPGTTG----------ASYIDYLVTDEFVSPLRYAHI 560 (811)
Q Consensus 497 --i~~~~~dilv~~~~~~~~~~~---~~~~~r-~Apvq~~~~g~~~t~g----------~~~~d~~~~d~~~~p~~~~~~ 560 (811)
+...++||+ |+|.... ..+..+ ..|+.+++.+...+.. +...|.+++-. +......
T Consensus 79 ~~~~~~~~Dvv-----~~h~~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~d~~i~~~---~~~~~~~ 150 (372)
T cd03792 79 RPLLDLDADVV-----VIHDPQPLALPLFKKKRGRPWIWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHL---PEYVPPQ 150 (372)
T ss_pred cccccCCCCEE-----EECCCCchhHHHhhhcCCCeEEEEeeeecCCCcHHHHHHHHHHHHhCCEEeecH---HHhcCCC
Confidence 225689999 5553322 222222 4565555433221110 11233333211 1111222
Q ss_pred CccceEEcCCccccCCCccccccCCCC-CCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEee
Q 003557 561 YSEKLVHVPHCYFVNDYKQKNMDVLDP-NCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLL 637 (811)
Q Consensus 561 ~~e~~~~lp~~~~~~~~~~~~~~~~~~-~~~~~r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~ 637 (811)
+..+.+.+|+..-..... . ....+ .....|.++|++++.++++.++|+ .|+.+.+++++..+.+..|+.+|+++
T Consensus 151 ~~~~~~vipngvd~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~ 227 (372)
T cd03792 151 VPPRKVIIPPSIDPLSGK--N-RELSPADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLV 227 (372)
T ss_pred CCCceEEeCCCCCCCccc--c-CCCCHHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEE
Confidence 222222455432211100 0 00001 111356789999999999999987 49999999999999888899999999
Q ss_pred cCChhh----HHHHHHHHHHcCCCCCceEEcCCC--ChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCC
Q 003557 638 RFPAAG----EMRLRAYAVAQGVQPDQIIFTDVA--MKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLE 710 (811)
Q Consensus 638 ~~~~~~----~~~l~~~~~~~gi~~~rv~~~~~~--~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~ 710 (811)
|.|+.. .+.+++..+..|+ .++|.|.|.. +..+...+|+.+|+|+.|+.++| |.+++|||++|+|||+....
T Consensus 228 G~g~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~ 306 (372)
T cd03792 228 GSGATDDPEGWIVYEEVLEYAEG-DPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVG 306 (372)
T ss_pred eCCCCCCchhHHHHHHHHHHhCC-CCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCC
Confidence 987531 2234444446787 5789999865 66777788999999999998998 99999999999999965433
Q ss_pred ccccchhHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 003557 711 KMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 784 (811)
Q Consensus 711 ~~~~r~~~~~l~~~g~~~~~v~~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 784 (811)
.... ++.. |... +++++.++....+.++.+|++.++.|+++.++.. ...|+++.+++++.++|+.
T Consensus 307 ~~~~-----~i~~-~~~g-~~~~~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~--~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 307 GIPL-----QIED-GETG-FLVDTVEEAAVRILYLLRDPELRRKMGANAREHV--RENFLITRHLKDYLYLISK 371 (372)
T ss_pred Cchh-----hccc-CCce-EEeCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHH--HHHcCHHHHHHHHHHHHHh
Confidence 3222 1111 4555 6677888889888899999999999999998876 3469999999999999975
|
The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.2e-17 Score=173.83 Aligned_cols=327 Identities=17% Similarity=0.127 Sum_probs=263.9
Q ss_pred CCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHc----
Q 003557 4 GRLNEAAQCCRQALALN--PLLVDAHSNLGNLMK-AQGLVQEAYSCYLEALRIQ-----PTFAIAWSNLAGLFMES---- 71 (811)
Q Consensus 4 g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~---- 71 (811)
|.-..|+.++++..... |++...+...+..+. ..+.+++++.+..+++... --.+.++..+|.+|..+
T Consensus 371 g~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a 450 (799)
T KOG4162|consen 371 GSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQA 450 (799)
T ss_pred ccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcC
Confidence 45567888888887777 766666665555544 5688888999988888732 11256777777777543
Q ss_pred -------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hhHHHhHHHHHHHcCCHH
Q 003557 72 -------GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYERGQAD 142 (811)
Q Consensus 72 -------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~la~~~~~~g~~~ 142 (811)
....++++.++++++.+|+|+.+.+.++.-|..+++.+.|....+++++.++. ...|..++.++...+++.
T Consensus 451 ~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 451 NLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhH
Confidence 23567888899999999999999999999999999999999999999998665 888889999999999999
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------------------------
Q 003557 143 MAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ--------------------------------- 189 (811)
Q Consensus 143 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------------------- 189 (811)
+|+...+.++...++|.........+-...++.++|+..+...+..-
T Consensus 531 ~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~ 610 (799)
T KOG4162|consen 531 EALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAI 610 (799)
T ss_pred HHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccc
Confidence 99999998888777755444444444444444444444333322210
Q ss_pred -----------------------C------CC-------hHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHH
Q 003557 190 -----------------------P------SH-------PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL 233 (811)
Q Consensus 190 -----------------------p------~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l 233 (811)
| .. ...|...+..+...++.++|..++.++-...|.....|+..
T Consensus 611 s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~ 690 (799)
T KOG4162|consen 611 STSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLR 690 (799)
T ss_pred hhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHh
Confidence 1 00 12466778888999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH--HHHHHHhcCCCcHHHHHHHHHHHHhCCCH
Q 003557 234 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ--DYIRAITIRPTMAEAHANLASAYKDSGHV 311 (811)
Q Consensus 234 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~ 311 (811)
|.++...|++++|.+.|..++.++|+++.+...+|.++.+.|+..-|.. .+..+++++|.++++|+.+|.++.+.|+.
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch
Confidence 9999999999999999999999999999999999999999999888888 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChH
Q 003557 312 EAAIKSYKQALLLRPDFPE 330 (811)
Q Consensus 312 ~~A~~~~~~al~~~p~~~~ 330 (811)
++|.++|..++++.+.+|.
T Consensus 771 ~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 771 KQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHhhccCCCc
Confidence 9999999999999988764
|
|
| >cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.1e-19 Score=191.64 Aligned_cols=324 Identities=10% Similarity=0.065 Sum_probs=212.0
Q ss_pred eEeeecCCCCCC--hhHhhHHHHhcccCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCC-------------CCHH
Q 003557 427 RVGYVSSDFGNH--PLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA-------------MSSD 491 (811)
Q Consensus 427 rvg~~s~~~~~h--~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 491 (811)
||.+++..+..+ ++...+..+.+.+.+.++||++++....... ..........++.++. ....
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~--~~~~~~~~i~v~~~p~~~~~~~~~~~~~~~~~~ 78 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRV--GIRYLTNGLKVYYLPFVVFYNQSTLPTFFGTFP 78 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCC--CcccccCceeEEEecceeccCCccccchhhhHH
Confidence 355666655443 3446777788888777899999986422111 0111111212222211 0124
Q ss_pred HHHHHHHhCCCeEEEeCCCCCCCcchh-----hhhc--CCCceEEeccccCCCCC-------------CCcccEEEecCc
Q 003557 492 MIAKLINEDKIQILINLNGYTKGARNE-----IFAM--QPAPIQVSYMGFPGTTG-------------ASYIDYLVTDEF 551 (811)
Q Consensus 492 ~~~~~i~~~~~dilv~~~~~~~~~~~~-----~~~~--r~Apvq~~~~g~~~t~g-------------~~~~d~~~~d~~ 551 (811)
.+.+.+...++||+ |+|+.... ++.. ...|+..+..+..+... ....|.++
T Consensus 79 ~l~~~~~~~~~DiI-----h~~~~~~~~~~~~~~~~~~~~~~~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii---- 149 (398)
T cd03796 79 LLRNILIRERITIV-----HGHQAFSALAHEALLHARTMGLKTVFTDHSLFGFADASSIHTNKLLRFSLADVDHVI---- 149 (398)
T ss_pred HHHHHHHhcCCCEE-----EECCCCchHHHHHHHHhhhcCCcEEEEecccccccchhhHHhhHHHHHhhccCCEEE----
Confidence 56777888899999 77764322 2222 33576666544211110 12233333
Q ss_pred cCCcCCC--------CCCccceEEcCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHH
Q 003557 552 VSPLRYA--------HIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNT 621 (811)
Q Consensus 552 ~~p~~~~--------~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~ 621 (811)
++.... ..-.+++..+|++.-. ..+ .+.... .+++.+++++++|. .|+.+.++++
T Consensus 150 -~~s~~~~~~~~~~~~~~~~k~~vi~ngvd~------~~f--~~~~~~------~~~~~~~i~~~grl~~~Kg~~~li~a 214 (398)
T cd03796 150 -CVSHTSKENTVLRASLDPERVSVIPNAVDS------SDF--TPDPSK------RDNDKITIVVISRLVYRKGIDLLVGI 214 (398)
T ss_pred -EecHhHhhHHHHHhCCChhhEEEEcCccCH------HHc--CCCccc------CCCCceEEEEEeccchhcCHHHHHHH
Confidence 332211 1113455566654311 001 111110 23567888888876 5999999999
Q ss_pred HHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHh
Q 003557 622 WCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWA 700 (811)
Q Consensus 622 ~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~ 700 (811)
+..+.+..|+.+|+++|.|+. .+.+++.+.+.|+ .++|.|.|..+.++....|..+|++|.|+.++| |.+++|||++
T Consensus 215 ~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l-~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~ 292 (398)
T cd03796 215 IPEICKKHPNVRFIIGGDGPK-RILLEEMREKYNL-QDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASC 292 (398)
T ss_pred HHHHHhhCCCEEEEEEeCCch-HHHHHHHHHHhCC-CCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHc
Confidence 999988999999999999876 7889999999999 589999999999999999999999999988878 9999999999
Q ss_pred CCCcccccCCccccchhHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHH
Q 003557 701 GLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLER 780 (811)
Q Consensus 701 g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 780 (811)
|+|||+.+......-+. . |-.- ++..|++++++.+.++..++.....++++.++.. ...||++.+++++.+
T Consensus 293 G~PVI~s~~gg~~e~i~-----~-~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~--~~~fs~~~~~~~~~~ 363 (398)
T cd03796 293 GLLVVSTRVGGIPEVLP-----P-DMIL-LAEPDVESIVRKLEEAISILRTGKHDPWSFHNRV--KKMYSWEDVAKRTEK 363 (398)
T ss_pred CCCEEECCCCCchhhee-----C-Ccee-ecCCCHHHHHHHHHHHHhChhhhhhHHHHHHHHH--HhhCCHHHHHHHHHH
Confidence 99999654333322221 1 1111 4455889999999999988776666777777766 446999999999999
Q ss_pred HHHHHHH
Q 003557 781 SYFKMWS 787 (811)
Q Consensus 781 ~y~~~~~ 787 (811)
+|+++..
T Consensus 364 ~y~~l~~ 370 (398)
T cd03796 364 VYDRILQ 370 (398)
T ss_pred HHHHHhc
Confidence 9998764
|
Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-17 Score=172.79 Aligned_cols=229 Identities=17% Similarity=0.124 Sum_probs=146.0
Q ss_pred CChHHHHHHHHHHHhh---CCC--hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 003557 106 GMPQEAIMCYQRAVQT---RPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 180 (811)
Q Consensus 106 g~~~~A~~~~~~al~~---~p~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 180 (811)
+..+.++..+.+++.. +|. ...++.+|.+|...|++++|+..|+++++.+|+++.+++.+|.++...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3455566666666642 222 45566667777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003557 181 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 260 (811)
Q Consensus 181 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 260 (811)
.|+++++++|++..++.++|.++...|++++|++.++++++.+|+++... ....+....+++++|+..+++.....+..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence 77777777777777777777777777777777777777777776665311 11122334567777777776655443222
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH-------HhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CChHHH
Q 003557 261 ADGLVNRGNTYKEIGRVTDAIQDYIRA-------ITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP-DFPEAT 332 (811)
Q Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~a-------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 332 (811)
.|. .+.++...|+..++ +.++.+ .++.|+..++|+++|.++.+.|++++|+.+|+++++.+| ++.+..
T Consensus 199 --~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 199 --QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred --ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 121 34444555555433 223322 244566678889999999999999999999999998886 565655
Q ss_pred HHHHHHh
Q 003557 333 CNLLHTL 339 (811)
Q Consensus 333 ~~l~~~~ 339 (811)
+.++.+.
T Consensus 275 ~~~~e~~ 281 (296)
T PRK11189 275 YALLELA 281 (296)
T ss_pred HHHHHHH
Confidence 5554433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-17 Score=171.97 Aligned_cols=234 Identities=14% Similarity=0.035 Sum_probs=142.4
Q ss_pred CCHHHHHHHHHHHHHhCC---C-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHH
Q 003557 38 GLVQEAYSCYLEALRIQP---T-FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIM 113 (811)
Q Consensus 38 g~~~~A~~~~~~al~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 113 (811)
+..+.++..+.+++...| . .+..|+.+|.+|...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 455666666666664322 2 255666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003557 114 CYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 192 (811)
Q Consensus 114 ~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 192 (811)
.|+++++++|+ ..++.++|.++...|++++|++.++++++.+|+++... ....+....+++++|+..+++.....+.+
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence 77777777666 66666677777777777777777777777777665211 11122334566777777776555432221
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHH-------hccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHH
Q 003557 193 PQALTNLGNIYMEWNMLPAAASYYKATL-------AVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP-LAADGL 264 (811)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~~l-------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 264 (811)
.+. .+..+...|+..++ ..++.+. +..|...++|+.+|.++.+.|++++|+.+|+++++.+| +..+..
T Consensus 199 --~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 199 --QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred --ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 111 23444445554333 1222222 33455667788888888888888888888888888775 555555
Q ss_pred HHHHHHHHHhCC
Q 003557 265 VNRGNTYKEIGR 276 (811)
Q Consensus 265 ~~la~~~~~~g~ 276 (811)
+.+..+....++
T Consensus 275 ~~~~e~~~~~~~ 286 (296)
T PRK11189 275 YALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHhh
Confidence 555555444333
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-18 Score=177.84 Aligned_cols=230 Identities=20% Similarity=0.298 Sum_probs=166.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 003557 28 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM 107 (811)
Q Consensus 28 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 107 (811)
+..|..+++.|+..+|.-+|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCC-hhHHH-------hHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHcCCHHH
Q 003557 108 PQEAIMCYQRAVQTRPN-AIAFG-------NLASTYYERGQADMAILYYKQAIGCDP--RFLEAYNNLGNALKDVGRVDE 177 (811)
Q Consensus 108 ~~~A~~~~~~al~~~p~-~~~~~-------~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~ 177 (811)
-.+|+.++.+.+...|. ..... ...........+..-.+.|-.+....| .++++...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 99999999999887664 11000 000000111122333444555555555 456666666666666666666
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 003557 178 AIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID 257 (811)
Q Consensus 178 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (811)
|+++|+.++...|++...|+.||-.+....+.++|+..|.+++++.|....++++||..+..+|.|++|.++|-.++.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666553
|
|
| >PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-18 Score=191.37 Aligned_cols=340 Identities=11% Similarity=0.069 Sum_probs=211.1
Q ss_pred CCccceEeeecCCC---CCChhHhhHHHHhcccCCCCeEEEEEecCCCCChHHHHHHHhccCceEECC-----CC---CH
Q 003557 422 GLRRLRVGYVSSDF---GNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVS-----AM---SS 490 (811)
Q Consensus 422 ~~~~lrvg~~s~~~---~~h~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~ 490 (811)
..+++||.++.... ...++...+..+.+.+.+.+.||++++..+.....+ ..+.-.......++ .. ..
T Consensus 55 ~~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~~~-~g~~v~~~~~~~~~~~~~~~~~~~~~ 133 (465)
T PLN02871 55 RSRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQEF-HGAKVIGSWSFPCPFYQKVPLSLALS 133 (465)
T ss_pred cCCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCccc-cCceeeccCCcCCccCCCceeeccCC
Confidence 36789999886422 224455677788888887889999888654321111 00110000000000 00 11
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCCCcch----hhh--hcCCCceEEeccccCCCC----CCCc----c----c--EEEecC
Q 003557 491 DMIAKLINEDKIQILINLNGYTKGARN----EIF--AMQPAPIQVSYMGFPGTT----GASY----I----D--YLVTDE 550 (811)
Q Consensus 491 ~~~~~~i~~~~~dilv~~~~~~~~~~~----~~~--~~r~Apvq~~~~g~~~t~----g~~~----~----d--~~~~d~ 550 (811)
..+.+.|++.++||+ |++.... .++ ...-.|+.+++.++.... +... + . +..+|.
T Consensus 134 ~~l~~~i~~~kpDiI-----h~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~ 208 (465)
T PLN02871 134 PRIISEVARFKPDLI-----HASSPGIMVFGALFYAKLLCVPLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADL 208 (465)
T ss_pred HHHHHHHHhCCCCEE-----EECCCchhHHHHHHHHHHhCCCEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCE
Confidence 367889999999999 4443211 111 123358888765542111 0000 0 0 012344
Q ss_pred ccCCcCCC-----CCC---ccceEEcCCccccCCCccccccCCCCCCCCCcCCCC-CCCCcEEEEecCCC--CCCCHHHH
Q 003557 551 FVSPLRYA-----HIY---SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYG-LPEDKFIFACFNQL--YKMDPEIF 619 (811)
Q Consensus 551 ~~~p~~~~-----~~~---~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~g-l~~~~~~~~~~~~~--~K~~~~~~ 619 (811)
++.++... ..+ .+++..+|+..-...+. +.......|..++ .+++.++++.++|+ .|+.+.++
T Consensus 209 ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~------p~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~~~li 282 (465)
T PLN02871 209 TLVTSPALGKELEAAGVTAANRIRVWNKGVDSESFH------PRFRSEEMRARLSGGEPEKPLIVYVGRLGAEKNLDFLK 282 (465)
T ss_pred EEECCHHHHHHHHHcCCCCcCeEEEeCCccCccccC------CccccHHHHHHhcCCCCCCeEEEEeCCCchhhhHHHHH
Confidence 44443321 111 34555555433221111 1111112333332 33466788888877 47766665
Q ss_pred HHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHH
Q 003557 620 NTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDIL 698 (811)
Q Consensus 620 ~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal 698 (811)
++ +++.|+.+|+|+|+|+. ++.+++.++. .+|+|+|..+.++...+|+.+||||.|+.++| |++++|||
T Consensus 283 ~a----~~~~~~~~l~ivG~G~~-~~~l~~~~~~-----~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAm 352 (465)
T PLN02871 283 RV----MERLPGARLAFVGDGPY-REELEKMFAG-----TPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAM 352 (465)
T ss_pred HH----HHhCCCcEEEEEeCChH-HHHHHHHhcc-----CCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHH
Confidence 54 55678999999999876 6677766552 46999999999999999999999999998888 99999999
Q ss_pred HhCCCcccccCCccccchhHHHHHh--cCCCCccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHH
Q 003557 699 WAGLPMITLPLEKMATRVAGSLCLA--TGLGEEMI--VNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARW 774 (811)
Q Consensus 699 ~~g~Pvvt~~g~~~~~r~~~~~l~~--~g~~~~~v--~~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (811)
++|+|||+....... .++.. .|-.+ ++ ..|++++++.+.+|.+|++.+.+|++..++... .||++.+
T Consensus 353 A~G~PVI~s~~gg~~-----eiv~~~~~~~~G-~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~---~fsw~~~ 423 (465)
T PLN02871 353 ASGVPVVAARAGGIP-----DIIPPDQEGKTG-FLYTPGDVDDCVEKLETLLADPELRERMGAAAREEVE---KWDWRAA 423 (465)
T ss_pred HcCCCEEEcCCCCcH-----hhhhcCCCCCce-EEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH---hCCHHHH
Confidence 999999954322211 12221 13334 33 258999999999999999999999999988763 4999999
Q ss_pred HHHHHH-HHHHHHHHHhcC
Q 003557 775 VKNLER-SYFKMWSLHCSG 792 (811)
Q Consensus 775 ~~~~e~-~y~~~~~~~~~~ 792 (811)
++++++ .|++++.+|...
T Consensus 424 a~~l~~~~Y~~~~~~~~~~ 442 (465)
T PLN02871 424 TRKLRNEQYSAAIWFWRKK 442 (465)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 999998 799999888654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-17 Score=151.20 Aligned_cols=206 Identities=23% Similarity=0.187 Sum_probs=162.2
Q ss_pred hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 003557 125 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 204 (811)
Q Consensus 125 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 204 (811)
..+...||..|+..|++..|.+.++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++++.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 45667777778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCChHHHHHHHHHHHhcc--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 003557 205 EWNMLPAAASYYKATLAVT--TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ 282 (811)
Q Consensus 205 ~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 282 (811)
.+|++++|...|++++... +..+.++.++|.|..+.|+++.|.++|+++++.+|+.+.....++..+.+.|++..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 8888888888888877642 44566777888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChH
Q 003557 283 DYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 330 (811)
Q Consensus 283 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 330 (811)
++++.....+-..+.+.....+-...|+-+.|-++=.+.....|...+
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 888877777777777777777777788888887777777777777654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.8e-16 Score=149.58 Aligned_cols=272 Identities=20% Similarity=0.224 Sum_probs=238.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------hhHHHhHHHHHH
Q 003557 63 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN------AIAFGNLASTYY 136 (811)
Q Consensus 63 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~la~~~~ 136 (811)
..|.-+.-.++.++|+..|..+++.+|...++...||++|...|..+.|+..-+..++. |+ ..+...||.-|.
T Consensus 40 v~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym 118 (389)
T COG2956 40 VKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYM 118 (389)
T ss_pred HhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHH
Confidence 34556677889999999999999999999999999999999999999999998877653 44 557889999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHHcCChHH
Q 003557 137 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP-----QALTNLGNIYMEWNMLPA 211 (811)
Q Consensus 137 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~ 211 (811)
..|-++.|...|....+...--..+...+..+|....+|++|++.-++..++.++.. ..+..++..+....+.+.
T Consensus 119 ~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~ 198 (389)
T COG2956 119 AAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDR 198 (389)
T ss_pred HhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHH
Confidence 999999999999998876666677899999999999999999999999999887753 567888999999999999
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 003557 212 AASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA-ADGLVNRGNTYKEIGRVTDAIQDYIRAITI 290 (811)
Q Consensus 212 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (811)
|...++++++.+|++..+-..+|.++...|+|++|++.++.+++.+|+. +++...+..+|.++|+.++.+..+.++.+.
T Consensus 199 A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 199 ARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999987 568889999999999999999999999998
Q ss_pred CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 003557 291 RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLH 337 (811)
Q Consensus 291 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 337 (811)
.+. +.+-..++..-....-.+.|..++.+-+...|+-.. .+.++.
T Consensus 279 ~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g-f~rl~~ 323 (389)
T COG2956 279 NTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG-FHRLMD 323 (389)
T ss_pred cCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH-HHHHHH
Confidence 876 446677778778888889999999999999998543 334443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-17 Score=150.70 Aligned_cols=204 Identities=23% Similarity=0.204 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 003557 25 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA 104 (811)
Q Consensus 25 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 104 (811)
.+...+|..|++.|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++++.|..++.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 46777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHhh--CCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 003557 105 LGMPQEAIMCYQRAVQT--RPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 181 (811)
Q Consensus 105 ~g~~~~A~~~~~~al~~--~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 181 (811)
+|++++|...|++++.. .+. +.++.++|.|..+.|+.+.|.++|+++++.+|+++.....++..++..|++-.|..+
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 88888888888888764 233 677888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCch
Q 003557 182 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA 228 (811)
Q Consensus 182 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 228 (811)
+++.....+-..+.+.....+-...|+-+.+.++=.++....|...+
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 88777777766777777777777777777777776666666666544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.9e-16 Score=160.98 Aligned_cols=362 Identities=16% Similarity=0.138 Sum_probs=283.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003557 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYK 82 (811)
Q Consensus 3 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 82 (811)
.|+-++|.......+..++.+...|..+|.++....+|++|+.+|+.|+..+|+|...|..++....++++++.....-.
T Consensus 54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~ 133 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRN 133 (700)
T ss_pred ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 58889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CC------hhHHHhHHHHHHHcCCHHHHHHHHHHHHH
Q 003557 83 EAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR---PN------AIAFGNLASTYYERGQADMAILYYKQAIG 153 (811)
Q Consensus 83 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 153 (811)
+.++..|..-..|...+.++...|++..|....+...+.. |+ .+.......+..+.|.+++|.+.+..--.
T Consensus 134 ~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~ 213 (700)
T KOG1156|consen 134 QLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK 213 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999888877654 44 33444556666777787777777665544
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHH-HHHHHH-------------
Q 003557 154 CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAA-SYYKAT------------- 219 (811)
Q Consensus 154 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~~------------- 219 (811)
.--+........+.++.+++++++|...|...+..+|++...+..+-.++..-.+--+++ ..|...
T Consensus 214 ~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rl 293 (700)
T KOG1156|consen 214 QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRL 293 (700)
T ss_pred HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhc
Confidence 333444455667788888888888888888888888887765555544443111111111 111111
Q ss_pred ---------------------Hhc-----------------------------------c------------CCCc--hH
Q 003557 220 ---------------------LAV-----------------------------------T------------TGLS--AP 229 (811)
Q Consensus 220 ---------------------l~~-----------------------------------~------------~~~~--~~ 229 (811)
++. . |... ..
T Consensus 294 plsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt 373 (700)
T KOG1156|consen 294 PLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWT 373 (700)
T ss_pred cHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHH
Confidence 100 0 1111 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC
Q 003557 230 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 309 (811)
Q Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 309 (811)
++.++.-+...|+++.|..+++.++...|..++.+...|+++...|++++|..+++.+.+++-.+..+-..-|....+.+
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn 453 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRAN 453 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHcc
Confidence 55678888899999999999999999999999999999999999999999999999999998777666667889999999
Q ss_pred CHHHHHHHHHHHHhcCCCCh------H-HHH--HHHHHhhhcCChhhHhHHHHHHHHHHHHHhc
Q 003557 310 HVEAAIKSYKQALLLRPDFP------E-ATC--NLLHTLQCVCSWEDRDRMFSEVEGIIRRQVN 364 (811)
Q Consensus 310 ~~~~A~~~~~~al~~~p~~~------~-~~~--~l~~~~~~~~~~~~a~~~~~~a~~l~~~~~~ 364 (811)
+.++|.+...+.-..+-+-. + .|+ .-+.++.++++|..|.+.|..+.+++.+-..
T Consensus 454 ~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~ 517 (700)
T KOG1156|consen 454 EIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSE 517 (700)
T ss_pred ccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 99999999888776543110 0 122 2245677788888888888888888877543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.6e-17 Score=163.09 Aligned_cols=201 Identities=21% Similarity=0.237 Sum_probs=150.3
Q ss_pred hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 003557 125 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 204 (811)
Q Consensus 125 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 204 (811)
...+..++..+...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|++...+..++.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 55666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCChHHHHHHHHHHHhcc--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 003557 205 EWNMLPAAASYYKATLAVT--TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ 282 (811)
Q Consensus 205 ~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 282 (811)
..|++++|...+++++... +.....+..+|.++...|++++|...++++++.+|++...+..++.++...|++++|..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777776543 34455667777777888888888888888887777777777788888888888888888
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 003557 283 DYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 325 (811)
Q Consensus 283 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 325 (811)
.++++++..|.++..+..++.++...|+.++|..+.+.+....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 8888877777777777777778878888888877777666554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-17 Score=180.33 Aligned_cols=350 Identities=18% Similarity=0.175 Sum_probs=289.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003557 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 83 (811)
Q Consensus 4 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 83 (811)
++...|...|-++++.++..+.++..+|..|...-+...|..+|.++.++++.+..++-..+..|.+..+++.|....-.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999766
Q ss_pred HHhcCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Q 003557 84 AVKLKPTF--PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE 160 (811)
Q Consensus 84 al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 160 (811)
+-+..|.. ...|..+|-.|.+.++...|+..|+.++..+|+ ...|..+|.+|...|.+..|++.|.++..++|.+..
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 66665543 235677999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHcCChHHHHHHHHHHHhcc----------
Q 003557 161 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH-------PQALTNLGNIYMEWNMLPAAASYYKATLAVT---------- 223 (811)
Q Consensus 161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---------- 223 (811)
..+..+.+....|+|.+|+..+...+...... .+.+..++..+...|-..+|..++++.++..
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999888764432 3444444444445555555555555443320
Q ss_pred -------------------CC-----------------------------------------CchHHHHHHHHHHH----
Q 003557 224 -------------------TG-----------------------------------------LSAPFNNLAVIYKQ---- 239 (811)
Q Consensus 224 -------------------~~-----------------------------------------~~~~~~~la~~~~~---- 239 (811)
|+ .+..|+++|..|++
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHH
Confidence 00 12337777777665
Q ss_pred ----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHH
Q 003557 240 ----QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 315 (811)
Q Consensus 240 ----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 315 (811)
+.+...|+.++.+++++..++...|+.+|.+ ...|++.-|..+|-+.+...|.+...|.++|.++.+..+++.|.
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~ 870 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAE 870 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhh
Confidence 2334578899999999988888999999888 66688999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHhhhcCChhhHhHHHHH
Q 003557 316 KSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSE 354 (811)
Q Consensus 316 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 354 (811)
..|.++..++|.+...|...+......|+.-++...|..
T Consensus 871 ~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 871 PAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 999999999999988888887777777766555555544
|
|
| >cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.78 E-value=8e-18 Score=182.23 Aligned_cols=314 Identities=14% Similarity=0.222 Sum_probs=205.7
Q ss_pred eEeeecCCCCCChhHhhHHHHhcccCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCC------HHHHHHHHHhC
Q 003557 427 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS------SDMIAKLINED 500 (811)
Q Consensus 427 rvg~~s~~~~~h~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~ 500 (811)
||.++.+++...++...+..+.+.+.+.+++|++++...... .....+......+..+.... ...+.+.++..
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEG-DYDDEIEKLGGKIYYIPARKKNPLKYFKKLYKLIKKN 79 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCc-chHHHHHHcCCeEEEecCCCccHHHHHHHHHHHHhcC
Confidence 578888888777788899999999988889999988765432 24445555555555433221 24567778889
Q ss_pred CCeEEEeCCCCCCCcch----hhhhc-CCCceEEec-cccCCCCC-CCc---------ccEEEecCccCCcCCC--C---
Q 003557 501 KIQILINLNGYTKGARN----EIFAM-QPAPIQVSY-MGFPGTTG-ASY---------IDYLVTDEFVSPLRYA--H--- 559 (811)
Q Consensus 501 ~~dilv~~~~~~~~~~~----~~~~~-r~Apvq~~~-~g~~~t~g-~~~---------~d~~~~d~~~~p~~~~--~--- 559 (811)
++||+ |++.... .++.. ...|+.+.+ .+...+.. ... .-+..++.++++.... .
T Consensus 80 ~~Dvv-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~ 154 (358)
T cd03812 80 KYDIV-----HVHGSSASGFILLAAKKAGVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKWLFG 154 (358)
T ss_pred CCCEE-----EEeCcchhHHHHHHHhhCCCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHHHHh
Confidence 99999 4444322 11121 234554432 22111111 100 0011234444443321 1
Q ss_pred -CCccceEEcCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEe
Q 003557 560 -IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWL 636 (811)
Q Consensus 560 -~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l 636 (811)
...+++..+|+..-.... ...+.....+...+.+++.++++.++|. .|+.+.+++++..+.+..|+.++++
T Consensus 155 ~~~~~~~~vi~ngvd~~~~------~~~~~~~~~~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~i 228 (358)
T cd03812 155 KVKNKKFKVIPNGIDLEKF------IFNEEIRKKRRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLL 228 (358)
T ss_pred CCCcccEEEEeccCcHHHc------CCCchhhhHHHHcCCCCCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEE
Confidence 112445555543321111 1111111225567778888999988876 5999999999999999999999999
Q ss_pred ecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccc
Q 003557 637 LRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATR 715 (811)
Q Consensus 637 ~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r 715 (811)
+|.|+. .+.+++.+++.|+ .++|.|.|. ..+....|+.+|+++-|+.++| |++++|||++|+|||+........-
T Consensus 229 vG~g~~-~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~~ 304 (358)
T cd03812 229 VGDGEL-EEEIKKKVKELGL-EDKVIFLGV--RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITKEVD 304 (358)
T ss_pred EeCCch-HHHHHHHHHhcCC-CCcEEEecc--cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCchhhh
Confidence 999876 7788888999999 699999996 4556667899999999998888 9999999999999996554333322
Q ss_pred hhHHHHHhcCCCCcccc-CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 003557 716 VAGSLCLATGLGEEMIV-NSMKEYEERAVSLALDRQKLQALTNKLKSVR 763 (811)
Q Consensus 716 ~~~~~l~~~g~~~~~v~-~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~ 763 (811)
+. . +..- +.. ++++++++++.++.+|++.+.+++...+...
T Consensus 305 i~-----~-~~~~-~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~~~~ 346 (358)
T cd03812 305 LT-----D-LVKF-LSLDESPEIWAEEILKLKSEDRRERSSESIKKKGL 346 (358)
T ss_pred hc-----c-CccE-EeCCCCHHHHHHHHHHHHhCcchhhhhhhhhhccc
Confidence 22 2 2222 333 4579999999999999999988887665544
|
capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1). |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=161.19 Aligned_cols=197 Identities=20% Similarity=0.187 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003557 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 103 (811)
Q Consensus 24 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 103 (811)
...+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.+..++..++.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 55667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCChHHHHHHHHHHHhhCC--C-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 003557 104 ALGMPQEAIMCYQRAVQTRP--N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 180 (811)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p--~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 180 (811)
..|++++|+..++++++..+ . ...+..++.++...|++++|...+.++++.+|++...+..++.++...|++++|..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777777765422 2 44555666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003557 181 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATL 220 (811)
Q Consensus 181 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 220 (811)
.++++++..|.++..+..++.++...|+.++|..+.+.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666666655555555556666666666666655555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=172.68 Aligned_cols=251 Identities=20% Similarity=0.266 Sum_probs=188.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q 003557 96 LNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR 174 (811)
Q Consensus 96 ~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 174 (811)
+..|..+.+.|+..+|.-.|+.+++.+|. .++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 45677777888888888888888888887 88888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHH-------HHHHHHHcCChHHHHHHHHHHHhccC--CCchHHHHHHHHHHHcCCHHH
Q 003557 175 VDEAIQCYNQCLSLQPSHPQALTN-------LGNIYMEWNMLPAAASYYKATLAVTT--GLSAPFNNLAVIYKQQGNYAD 245 (811)
Q Consensus 175 ~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~g~~~~ 245 (811)
-.+|.+++.+-+...|.....-.. ...-......+..-.++|-.+....| .+++++..||.+|.-.|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 888888888887766542211100 00011111123344555666666666 678888888888888888888
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 003557 246 AISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 325 (811)
Q Consensus 246 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 325 (811)
|+.+|+.++...|++...|+.+|-.+..-.+.++|+..|.+|+++.|....++++||..+..+|.|++|.++|-.++.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888775
Q ss_pred CC----------ChHHHHHHHHHhhhcCChh
Q 003557 326 PD----------FPEATCNLLHTLQCVCSWE 346 (811)
Q Consensus 326 p~----------~~~~~~~l~~~~~~~~~~~ 346 (811)
++ +..+|..|-..+..+++.+
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 54 1235666666666666655
|
|
| >cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-17 Score=178.83 Aligned_cols=335 Identities=16% Similarity=0.160 Sum_probs=219.6
Q ss_pred eEeeecCCCCCChhHhhHHHHhcccCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCC-------HHHHHHHHHh
Q 003557 427 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS-------SDMIAKLINE 499 (811)
Q Consensus 427 rvg~~s~~~~~h~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~ 499 (811)
||.++.+.+...++...+..+.+.+.+.++++.+++..... .....++.....++.+.... ...+.+.++.
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~--~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 78 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRG--ELGEELEEAGVPVYCLGKRPGRPDPGALLRLYKLIRR 78 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcch--hhhHHHHhcCCeEEEEecccccccHHHHHHHHHHHHh
Confidence 57888888888888889999999998888888888765332 23444544333333332111 2567888899
Q ss_pred CCCeEEEeCCCCCCCcchhhhhc--CCCceEEeccccCCCCC--CCc----cc---EEEecCccCCcCC-C------CCC
Q 003557 500 DKIQILINLNGYTKGARNEIFAM--QPAPIQVSYMGFPGTTG--ASY----ID---YLVTDEFVSPLRY-A------HIY 561 (811)
Q Consensus 500 ~~~dilv~~~~~~~~~~~~~~~~--r~Apvq~~~~g~~~t~g--~~~----~d---~~~~d~~~~p~~~-~------~~~ 561 (811)
.++||++....++.... .+... +..|+..+..+.....+ ... +. .-.+|.++..+.. . ..-
T Consensus 79 ~~~div~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 157 (365)
T cd03807 79 LRPDVVHTWMYHADLYG-GLAARLAGVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAAAEYHQAIGYP 157 (365)
T ss_pred hCCCEEEeccccccHHH-HHHHHhcCCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEeccHHHHHHHHHcCCC
Confidence 99999965443322111 11111 33455555444332211 000 00 0011222222221 1 112
Q ss_pred ccceEEcCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecC
Q 003557 562 SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRF 639 (811)
Q Consensus 562 ~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~ 639 (811)
.+++..+|++.-..... ...+.....|+++|++++.++++.+++. .|..+.+++++.++.+..|+.+|+++|.
T Consensus 158 ~~~~~vi~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~ 232 (365)
T cd03807 158 PKKIVVIPNGVDTERFS-----PDLDARARLREELGLPEDTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGD 232 (365)
T ss_pred hhheeEeCCCcCHHhcC-----CcccchHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 34444555432111100 0011112345788999888999888876 5999999999999999999999999998
Q ss_pred ChhhHHHHHHHHH-HcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchh
Q 003557 640 PAAGEMRLRAYAV-AQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVA 717 (811)
Q Consensus 640 ~~~~~~~l~~~~~-~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~ 717 (811)
++. ...+..... +.|+ .++|.|.|. ..+....|+.+|+++.|+.++| |++++|||++|+|||+........
T Consensus 233 ~~~-~~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~~~e--- 305 (365)
T cd03807 233 GPD-RANLELLALKELGL-EDKVILLGE--RSDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVGDNAE--- 305 (365)
T ss_pred Ccc-hhHHHHHHHHhcCC-CceEEEccc--cccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCCChHH---
Confidence 765 555666665 7888 689999994 3556677899999999988877 999999999999999755433222
Q ss_pred HHHHHhcCCCCccc-cCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 003557 718 GSLCLATGLGEEMI-VNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 783 (811)
Q Consensus 718 ~~~l~~~g~~~~~v-~~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 783 (811)
++...|. ++ .+|++++++.+..+.+|++.+.++++..++.. ...|+.+.++++++++|+
T Consensus 306 --~~~~~g~---~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~--~~~~s~~~~~~~~~~~y~ 365 (365)
T cd03807 306 --LVGDTGF---LVPPGDPEALAEAIEALLADPALRQALGEAARERI--EENFSIEAMVEAYEELYR 365 (365)
T ss_pred --HhhcCCE---EeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHhC
Confidence 2222122 22 35899999999999999999999999988876 446999999999999884
|
WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis. |
| >cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.6e-17 Score=176.05 Aligned_cols=334 Identities=16% Similarity=0.143 Sum_probs=213.4
Q ss_pred eEeeecCCCC-CChhHhhHHHHhcccCCCCeEEEEEecCCCCChHHHHHHHhccCceEE-CCCCCHHHHHHHHHhCCCeE
Q 003557 427 RVGYVSSDFG-NHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVD-VSAMSSDMIAKLINEDKIQI 504 (811)
Q Consensus 427 rvg~~s~~~~-~h~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~di 504 (811)
||+||++... ..++..++..+.+.+.+...++.+++............ ......... ........+.+.++..++||
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~di 79 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGG-EQEVVRVIVLDNPLDYRRAARAIRLSGPDV 79 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCC-cccceeeeecCCchhHHHHHHHHhhcCCCE
Confidence 5888888766 56788899999998888888888877554322111100 000111111 11123466788899999999
Q ss_pred EEeCCCCCC--Ccchhhhh----cCCCceEEecccc-CCCCCC--Ccc---cEEEecCccCCc-CC-----CCCCccceE
Q 003557 505 LINLNGYTK--GARNEIFA----MQPAPIQVSYMGF-PGTTGA--SYI---DYLVTDEFVSPL-RY-----AHIYSEKLV 566 (811)
Q Consensus 505 lv~~~~~~~--~~~~~~~~----~r~Apvq~~~~g~-~~t~g~--~~~---d~~~~d~~~~p~-~~-----~~~~~e~~~ 566 (811)
++-...+.. +.....+. .+..|+.++..+. +..... ..+ -+..+|.+++++ .. ...+.+++.
T Consensus 80 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~ 159 (366)
T cd03822 80 VVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMSSELLRALLLRAYPEKIA 159 (366)
T ss_pred EEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEeeHHHHHHHHhhcCCCcEE
Confidence 975442211 11111111 1446777766554 111110 000 011234444442 11 112245666
Q ss_pred EcCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecCChhhH
Q 003557 567 HVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGE 644 (811)
Q Consensus 567 ~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~ 644 (811)
.+|+........ + ...+...+.+.+.++++++++. .|+.+.+++++.++.++.|+.+|+++|.+....
T Consensus 160 ~i~~~~~~~~~~--------~--~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~ 229 (366)
T cd03822 160 VIPHGVPDPPAE--------P--PESLKALGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDL 229 (366)
T ss_pred EeCCCCcCcccC--------C--chhhHhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccch
Confidence 676543221110 0 1111233445566777777755 599999999999999999999999999765422
Q ss_pred HHHHH----HHHHcCCCCCceEEcCC-CChHHHHHhcCCCcEEecCCCCC--C-hhHHHHHHHhCCCcccccCCccccch
Q 003557 645 MRLRA----YAVAQGVQPDQIIFTDV-AMKQEHIRRSSLADLFLDTPLCN--A-HTTGTDILWAGLPMITLPLEKMATRV 716 (811)
Q Consensus 645 ~~l~~----~~~~~gi~~~rv~~~~~-~~~~~~~~~~~~~Dv~ld~~~~~--g-~~t~~eal~~g~Pvvt~~g~~~~~r~ 716 (811)
..... .+++.|+ .++|+|.|. .+.++....++.+|+++.|+.++ | |.+++|||++|+|||+.+... ...+
T Consensus 230 ~~~~~~~~~~i~~~~~-~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~i 307 (366)
T cd03822 230 ERYRGEAYALAERLGL-ADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-AEEV 307 (366)
T ss_pred hhhhhhhHhHHHhcCC-CCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-hhee
Confidence 22222 3788899 689999986 88899999999999999999888 7 999999999999999755332 1111
Q ss_pred hHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 003557 717 AGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 783 (811)
Q Consensus 717 ~~~~l~~~g~~~~~v~--~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 783 (811)
.. +-.. ++. .|++++++.+.++.+|++.+.+++++.++... . |+++.+++++.++|+
T Consensus 308 -----~~-~~~g-~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~-~s~~~~~~~~~~~~~ 366 (366)
T cd03822 308 -----LD-GGTG-LLVPPGDPAALAEAIRRLLADPELAQALRARAREYAR--A-MSWERVAERYLRLLA 366 (366)
T ss_pred -----ee-CCCc-EEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHh--h-CCHHHHHHHHHHHhC
Confidence 11 2233 333 57999999999999999999999999988763 3 999999999998873
|
ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-15 Score=146.32 Aligned_cols=295 Identities=18% Similarity=0.186 Sum_probs=249.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHH
Q 003557 28 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP-----DAYLNLGNVY 102 (811)
Q Consensus 28 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~ 102 (811)
+..|.-+.-..+.++|+..|..+++.+|...++...||+.|...|..+.|+.+-+..++. |+.. -+...||.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHH
Confidence 455777777889999999999999999999999999999999999999999998877764 3332 3788999999
Q ss_pred HHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHcCCHH
Q 003557 103 KALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF-----LEAYNNLGNALKDVGRVD 176 (811)
Q Consensus 103 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~ 176 (811)
...|-++.|...|....+...- ..+...|..+|....+|++|++..++..+..+.. ...|..++..+....+.+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 9999999999999988764333 7788999999999999999999999999887764 346888999999999999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003557 177 EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGL-SAPFNNLAVIYKQQGNYADAISCYNEVLR 255 (811)
Q Consensus 177 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 255 (811)
.|...++++++.+|++..+-..+|.++...|+++.|++.++.+++.+|.. +++...|..+|.+.|+.++.+..+.++.+
T Consensus 198 ~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 198 RARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999885 56778899999999999999999999998
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhc
Q 003557 256 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD--SGHVEAAIKSYKQALLL 324 (811)
Q Consensus 256 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~ 324 (811)
..++ .++...++..-....-.+.|..++.+-+...|+.-..+..+..-... .|...+.+..+++++..
T Consensus 278 ~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 278 TNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred ccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 8765 45666677777777778899999999999999865444444333322 34577778888877753
|
|
| >cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.8e-18 Score=184.70 Aligned_cols=336 Identities=17% Similarity=0.140 Sum_probs=207.9
Q ss_pred ceEeeecCCCCCChhHhhHHHHhcccCCCCeEEEEEecCCCCChHHHHHHHhccCceEEC----CC--CCH--------H
Q 003557 426 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDV----SA--MSS--------D 491 (811)
Q Consensus 426 lrvg~~s~~~~~h~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~--------~ 491 (811)
++|.++.+++...++...+..+.+.+.+.++||++++......... .........++.. +. ... .
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 79 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHCF-EETKDGTLPVRVRGDWLPRSIFGRFHILCAYLR 79 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhcc-hhccCCeeEEEEEeEEEcchhhHhHHHHHHHHH
Confidence 4789999998877778888889999988899999998643221111 1111110111111 10 000 0
Q ss_pred HHH-----HHHHhCCCeEEEeCCCCCCCcchhh--hhc-CCCceEEeccccCCCCCC---Ccc--------------cEE
Q 003557 492 MIA-----KLINEDKIQILINLNGYTKGARNEI--FAM-QPAPIQVSYMGFPGTTGA---SYI--------------DYL 546 (811)
Q Consensus 492 ~~~-----~~i~~~~~dilv~~~~~~~~~~~~~--~~~-r~Apvq~~~~g~~~t~g~---~~~--------------d~~ 546 (811)
.+. ..++..++||++ ++.....+ ... +..|+..... +|..... ..+ -+.
T Consensus 80 ~~~~~~~~~~~~~~~~Dvi~-----~~~~~~~~~~~~~~~~~~~i~~~h-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 153 (392)
T cd03805 80 MLYLALYLLLLPDEKYDVFI-----VDQVSACVPLLKLFSPSKILFYCH-FPDQLLAQRGSLLKRLYRKPFDWLEEFTTG 153 (392)
T ss_pred HHHHHHHHHhcccCCCCEEE-----EcCcchHHHHHHHhcCCcEEEEEe-cChHHhcCCCcHHHHHHHHHHHHHHHHHhh
Confidence 011 135567999994 43322222 111 2256544432 3322111 000 022
Q ss_pred EecCccCCcCCCCCCccceE-EcCC--ccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHH
Q 003557 547 VTDEFVSPLRYAHIYSEKLV-HVPH--CYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNT 621 (811)
Q Consensus 547 ~~d~~~~p~~~~~~~~e~~~-~lp~--~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~ 621 (811)
.+|.+++++.....+.++.. ..+. ..+.+++.......+.+ ....+...+.+++.++|++++|. .|+.+.++++
T Consensus 154 ~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~grl~~~Kg~~~ll~a 232 (392)
T cd03805 154 MADKIVVNSNFTASVFKKTFPSLAKNPREVVYPCVDTDSFESTS-EDPDPGLLIPKSGKKTFLSINRFERKKNIALAIEA 232 (392)
T ss_pred CceEEEEcChhHHHHHHHHhcccccCCcceeCCCcCHHHcCccc-ccccccccccCCCceEEEEEeeecccCChHHHHHH
Confidence 34555554433211111110 1111 00111111111111111 11134445667788889888876 5999999999
Q ss_pred HHHHHhhc---CCeEEEeecCChhh-------HHHHHHHHHH-cCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCC
Q 003557 622 WCNILRRV---PNSALWLLRFPAAG-------EMRLRAYAVA-QGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA 690 (811)
Q Consensus 622 ~~~il~~~---p~~~l~l~~~~~~~-------~~~l~~~~~~-~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g 690 (811)
+.++.+.. |+.+|+++|+++.. .+.+++.+.+ .|+ .++|+|.|..+..+....|..+|++|.|+.++|
T Consensus 233 ~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l-~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~ 311 (392)
T cd03805 233 FAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLL-EDQVIFLPSISDSQKELLLSSARALLYTPSNEH 311 (392)
T ss_pred HHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCC-CceEEEeCCCChHHHHHHHhhCeEEEECCCcCC
Confidence 99998887 89999999976531 2578888888 899 599999999998888888999999999988888
Q ss_pred -hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCC
Q 003557 691 -HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLF 769 (811)
Q Consensus 691 -~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 769 (811)
|++++|||++|+|||+...+....-+. . |....++..|++++++.+.++..|++.+.+++++.++.. ...|
T Consensus 312 ~g~~~lEAma~G~PvI~s~~~~~~e~i~-----~-~~~g~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~a~~~~--~~~~ 383 (392)
T cd03805 312 FGIVPLEAMYAGKPVIACNSGGPLETVV-----D-GETGFLCEPTPEEFAEAMLKLANDPDLADRMGAAGRKRV--KEKF 383 (392)
T ss_pred CCchHHHHHHcCCCEEEECCCCcHHHhc-----c-CCceEEeCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHH--HHhc
Confidence 999999999999999765443333332 1 233424556899999999999999999999999988876 3459
Q ss_pred ChHHHHHHH
Q 003557 770 DTARWVKNL 778 (811)
Q Consensus 770 ~~~~~~~~~ 778 (811)
+.+.+++++
T Consensus 384 s~~~~~~~~ 392 (392)
T cd03805 384 STEAFAERL 392 (392)
T ss_pred CHHHHhhhC
Confidence 998887753
|
ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans. |
| >TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.6e-18 Score=186.47 Aligned_cols=185 Identities=17% Similarity=0.200 Sum_probs=151.6
Q ss_pred CCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCC--eEEEeecCCh----hhHHHHHHHHHHcCCCCCceE
Q 003557 591 PKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPN--SALWLLRFPA----AGEMRLRAYAVAQGVQPDQII 662 (811)
Q Consensus 591 ~~r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~--~~l~l~~~~~----~~~~~l~~~~~~~gi~~~rv~ 662 (811)
..+.++|++++.++|++++|. .|+.+.+++++.+++++.|+ .+|+++|.+. ...+.+++.+++.|+ .++|.
T Consensus 208 ~~~~~~~~~~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l-~~~v~ 286 (405)
T TIGR03449 208 TERARLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGI-ADRVR 286 (405)
T ss_pred HHHHhcCCCCCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCC-CceEE
Confidence 357788998888888888877 49999999999999998887 8889988531 225788999999999 58999
Q ss_pred EcCCCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCcccc--CCHHHHH
Q 003557 663 FTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYE 739 (811)
Q Consensus 663 ~~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~--~~~~~y~ 739 (811)
|+|..+.++....|+.+|+++.|+..+| |++++|||++|+|||+........ ++.. |-.. +++ .|+++++
T Consensus 287 ~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~~~e-----~i~~-~~~g-~~~~~~d~~~la 359 (405)
T TIGR03449 287 FLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGGLPV-----AVAD-GETG-LLVDGHDPADWA 359 (405)
T ss_pred ECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCCcHh-----hhcc-CCce-EECCCCCHHHHH
Confidence 9999999999999999999999987777 999999999999999654322221 2221 3334 333 4899999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHH
Q 003557 740 ERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMW 786 (811)
Q Consensus 740 ~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~ 786 (811)
+.+.++.+|++.+.++++..++... .|+++.++++++++|.++.
T Consensus 360 ~~i~~~l~~~~~~~~~~~~~~~~~~---~fsw~~~~~~~~~~y~~~~ 403 (405)
T TIGR03449 360 DALARLLDDPRTRIRMGAAAVEHAA---GFSWAATADGLLSSYRDAL 403 (405)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999887642 4999999999999999875
|
Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=159.44 Aligned_cols=282 Identities=26% Similarity=0.242 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003557 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 103 (811)
Q Consensus 24 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 103 (811)
++-....|..+++..+|.+|+..+..+++..|+++..|...+.++...+++++|.-..++.+++.|.....+...++++.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 44566778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHh------------h------CCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 003557 104 ALGMPQEAIMCYQRAVQ------------T------RPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNN 164 (811)
Q Consensus 104 ~~g~~~~A~~~~~~al~------------~------~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 164 (811)
..++..+|.+.++..-. . .|. ..+...-+.++...|++++|...--..+++++.+.++++.
T Consensus 129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~v 208 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYV 208 (486)
T ss_pred hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHh
Confidence 99888888877662210 0 011 2223334556666666666666666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHH
Q 003557 165 LGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 244 (811)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~ 244 (811)
.|.++...++.+.|+..|++++.++|+...+-... . .|.....+..-|.-.++.|++.
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~----~------------------~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLDPDHQKSKSAS----M------------------MPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred cccccccccchHHHHHHHhhhhccChhhhhHHhHh----h------------------hHHHHHHHHhhhhhHhhccchh
Confidence 66666666666666666666666666543210000 0 0000112333455555555555
Q ss_pred HHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 003557 245 DAISCYNEVLRIDPLA----ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 320 (811)
Q Consensus 245 ~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 320 (811)
+|.++|.+++.++|++ +..|.+++.+...+|+..+|+...+.++++++....++...|.|+..++++++|.+.|++
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555543 234555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhcCCC
Q 003557 321 ALLLRPD 327 (811)
Q Consensus 321 al~~~p~ 327 (811)
+++...+
T Consensus 347 a~q~~~s 353 (486)
T KOG0550|consen 347 AMQLEKD 353 (486)
T ss_pred HHhhccc
Confidence 5554433
|
|
| >PLN02949 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.1e-17 Score=177.00 Aligned_cols=177 Identities=12% Similarity=0.109 Sum_probs=141.9
Q ss_pred EEEEecCCC--CCCCHHHHHHHHHHHhh----cCCeEEEeecCChh-----hHHHHHHHHHHcCCCCCceEEcCCCChHH
Q 003557 603 FIFACFNQL--YKMDPEIFNTWCNILRR----VPNSALWLLRFPAA-----GEMRLRAYAVAQGVQPDQIIFTDVAMKQE 671 (811)
Q Consensus 603 ~~~~~~~~~--~K~~~~~~~~~~~il~~----~p~~~l~l~~~~~~-----~~~~l~~~~~~~gi~~~rv~~~~~~~~~~ 671 (811)
.+|.+++|. .|+++.++++|+++.++ .|+.+|+|+|+++. ..+.|++.+++.|+ .++|.|.|..+.++
T Consensus 269 ~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L-~~~V~f~g~v~~~e 347 (463)
T PLN02949 269 PYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGL-DGDVEFHKNVSYRD 347 (463)
T ss_pred CEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCC-CCcEEEeCCCCHHH
Confidence 456666654 69999999999998764 47899999997632 12578899999999 69999999999999
Q ss_pred HHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHh--cCCCCccccCCHHHHHHHHHHHhc-
Q 003557 672 HIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLA--TGLGEEMIVNSMKEYEERAVSLAL- 747 (811)
Q Consensus 672 ~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~--~g~~~~~v~~~~~~y~~~~~~l~~- 747 (811)
....|+.+|++|.|+.++| |++++|||++|+|||+........ .++.. -|..+ +.+.|+++|++.+.++.+
T Consensus 348 l~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~----eIV~~~~~g~tG-~l~~~~~~la~ai~~ll~~ 422 (463)
T PLN02949 348 LVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM----DIVLDEDGQQTG-FLATTVEEYADAILEVLRM 422 (463)
T ss_pred HHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc----eeeecCCCCccc-ccCCCHHHHHHHHHHHHhC
Confidence 9999999999999988888 999999999999999654221110 01100 04445 667899999999999998
Q ss_pred CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHH
Q 003557 748 DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 788 (811)
Q Consensus 748 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 788 (811)
+++.+.+|+++.+++.. .|+.+.|++++++.|+.+++.
T Consensus 423 ~~~~r~~m~~~ar~~~~---~FS~e~~~~~~~~~i~~l~~~ 460 (463)
T PLN02949 423 RETERLEIAAAARKRAN---RFSEQRFNEDFKDAIRPILNS 460 (463)
T ss_pred CHHHHHHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHhh
Confidence 68889999999998763 399999999999999988764
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-16 Score=168.40 Aligned_cols=238 Identities=23% Similarity=0.319 Sum_probs=130.6
Q ss_pred hhHHHhHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC
Q 003557 125 AIAFGNLASTYYERGQADMAILYYKQAIGC--------DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL-----QPS 191 (811)
Q Consensus 125 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~ 191 (811)
..+...++..|...|++++|+..++.+++. .|........+|.+|..++++++|+.+|++++.+ .++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 334444555555555555555555555544 3333333444555555555555555555555543 122
Q ss_pred C---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Q 003557 192 H---PQALTNLGNIYMEWNMLPAAASYYKATLAVT--------TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID--- 257 (811)
Q Consensus 192 ~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 257 (811)
+ ..++.+|+.+|...|++++|..++++++++. +.-...+.+++.++..++++++|..++++++++.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2 2345555555555555555555555555432 1223345555666666666666666666655441
Q ss_pred -----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 003557 258 -----PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR--------PTMAEAHANLASAYKDSGHVEAAIKSYKQALLL 324 (811)
Q Consensus 258 -----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 324 (811)
+.-+..+.++|.+|...|++++|.++|++++++. +.....++++|..|.+.+++.+|.+.|.++..+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1224466666666666666666666666666552 222345666666666666666666666665543
Q ss_pred ----CCCC---hHHHHHHHHHhhhcCChhhHhHHHHHHHHHHHHH
Q 003557 325 ----RPDF---PEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQ 362 (811)
Q Consensus 325 ----~p~~---~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l~~~~ 362 (811)
.|++ ...+.||+.+|..+|++++|.+..+.+..+-++.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~ 483 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQR 483 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHc
Confidence 2333 3445566666777777776666666665554443
|
|
| >cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-17 Score=179.95 Aligned_cols=180 Identities=18% Similarity=0.260 Sum_probs=145.4
Q ss_pred CcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCCh
Q 003557 592 KRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMK 669 (811)
Q Consensus 592 ~r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~ 669 (811)
.+.++|++++.++++++++. .|+.+.++++|.++.++ ++.+|+++|.|+. ...+++.+.+.|+ .++|.|.|..
T Consensus 187 ~~~~~~~~~~~~~il~~g~l~~~K~~~~li~a~~~l~~~-~~~~l~i~G~g~~-~~~~~~~~~~~~~-~~~v~~~g~~-- 261 (371)
T cd04962 187 LKRRLGAPEGEKVLIHISNFRPVKRIDDVIRIFAKVRKE-VPARLLLVGDGPE-RSPAERLARELGL-QDDVLFLGKQ-- 261 (371)
T ss_pred HHHhcCCCCCCeEEEEecccccccCHHHHHHHHHHHHhc-CCceEEEEcCCcC-HHHHHHHHHHcCC-CceEEEecCc--
Confidence 46678898888888888876 59999999999988766 5589999998876 7788899999999 5899999954
Q ss_pred HHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCcccc--CCHHHHHHHHHHHh
Q 003557 670 QEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLA 746 (811)
Q Consensus 670 ~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~--~~~~~y~~~~~~l~ 746 (811)
.+...+|..+|+++-|+.++| |++++|||++|+|||+......+.-+ .. |... ++. .|.+++++.+.++.
T Consensus 262 ~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~~~~e~i-----~~-~~~G-~~~~~~~~~~l~~~i~~l~ 334 (371)
T cd04962 262 DHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAGGIPEVV-----KH-GETG-FLVDVGDVEAMAEYALSLL 334 (371)
T ss_pred ccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCCCchhhh-----cC-CCce-EEcCCCCHHHHHHHHHHHH
Confidence 355566889999999998888 99999999999999975543332222 11 3334 333 38899999999999
Q ss_pred cCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHH
Q 003557 747 LDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKM 785 (811)
Q Consensus 747 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~ 785 (811)
+|++.+..|+++.++.. ...|+++.+++++.+.|+++
T Consensus 335 ~~~~~~~~~~~~~~~~~--~~~fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 335 EDDELWQEFSRAARNRA--AERFDSERIVPQYEALYRRL 371 (371)
T ss_pred hCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHhC
Confidence 99999999999998874 23499999999999999863
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-14 Score=144.93 Aligned_cols=354 Identities=14% Similarity=0.082 Sum_probs=284.1
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 003557 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 81 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 81 (811)
.++++..|..+|++++..+..+...|...+.+-++......|..++++++..-|.-...|+....+-..+|+...|.++|
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--
Q 003557 82 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL-- 159 (811)
Q Consensus 82 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-- 159 (811)
++-++..|+ ..+|......-.+.+..+.|...|++.+-..|+...|...+..-.+.|+..-|...|+++++.-.++.
T Consensus 165 erW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 165 ERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred HHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 999999987 47888888888888899999999999998899988888888888888888888888888876544332
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------------------------------hcCCCChH
Q 003557 160 -EAYNNLGNALKDVGRVDEAIQCYNQCL--------------------------------------------SLQPSHPQ 194 (811)
Q Consensus 160 -~~~~~la~~~~~~g~~~~A~~~~~~al--------------------------------------------~~~p~~~~ 194 (811)
..+...|..-..++.++.|.-+|+-++ +.+|.|.+
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD 323 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch
Confidence 233334444444444555544444444 44555666
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchH---------HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCC----
Q 003557 195 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP---------FNNLA-VIYKQQGNYADAISCYNEVLRIDPLA---- 260 (811)
Q Consensus 195 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---------~~~la-~~~~~~g~~~~A~~~~~~al~~~p~~---- 260 (811)
+|.....+....|+.+.-.+.|++++...|...+- |.+.+ ..-....+.+.+.+.|+.++++-|..
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtF 403 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTF 403 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchH
Confidence 77777777777788888888888888776653321 11111 11224577888888888888887743
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhh
Q 003557 261 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340 (811)
Q Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 340 (811)
+..|...|....++.+...|.+.+-.++...|.+- ..-....+-.++++++....+|++.++.+|.+-.+|...+.+-.
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~ 482 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELET 482 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHH
Confidence 56788888888888899999999999999888854 66666777888999999999999999999999999999999999
Q ss_pred hcCChhhHhHHHHHHHH
Q 003557 341 CVCSWEDRDRMFSEVEG 357 (811)
Q Consensus 341 ~~~~~~~a~~~~~~a~~ 357 (811)
.+|+++.+...|+-|..
T Consensus 483 ~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 483 SLGDTDRARAIFELAIS 499 (677)
T ss_pred HhhhHHHHHHHHHHHhc
Confidence 99999998888887754
|
|
| >PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.3e-17 Score=175.18 Aligned_cols=181 Identities=13% Similarity=0.139 Sum_probs=141.6
Q ss_pred CcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecCChhh----H----HHHHHHHHHcCCCCCce
Q 003557 592 KRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG----E----MRLRAYAVAQGVQPDQI 661 (811)
Q Consensus 592 ~r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~----~----~~l~~~~~~~gi~~~rv 661 (811)
.|..+|++++..+++.++|+ .|+.+.++++|.++.++.|+.+|+|+|+++.. . +.+++.+.+.| ++|
T Consensus 183 ~~~~~~~~~~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~---~~v 259 (380)
T PRK15484 183 LRQQLNISPDETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG---DRC 259 (380)
T ss_pred HHHHhCCCCCCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcC---CcE
Confidence 46788998787888888876 59999999999999999999999999976531 1 23444444444 579
Q ss_pred EEcCCCChHHHHHhcCCCcEEecCCCC-CC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCcc-c--cCCHH
Q 003557 662 IFTDVAMKQEHIRRSSLADLFLDTPLC-NA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEM-I--VNSMK 736 (811)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~Dv~ld~~~~-~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~-v--~~~~~ 736 (811)
+|.|..+..+....|+.+|+++-|+.+ +| |++++|||++|+|||+........ ++.. |... + + ..|++
T Consensus 260 ~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg~~E-----iv~~-~~~G-~~l~~~~d~~ 332 (380)
T PRK15484 260 IMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGGITE-----FVLE-GITG-YHLAEPMTSD 332 (380)
T ss_pred EEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCCcHh-----hccc-CCce-EEEeCCCCHH
Confidence 999999989999999999999999865 77 999999999999999654332222 1111 3333 3 3 35899
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHH
Q 003557 737 EYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKM 785 (811)
Q Consensus 737 ~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~ 785 (811)
++++.+.++.+|++. .+++++.++.. ...|+++.+++++++.|.+.
T Consensus 333 ~la~~I~~ll~d~~~-~~~~~~ar~~~--~~~fsw~~~a~~~~~~l~~~ 378 (380)
T PRK15484 333 SIISDINRTLADPEL-TQIAEQAKDFV--FSKYSWEGVTQRFEEQIHNW 378 (380)
T ss_pred HHHHHHHHHHcCHHH-HHHHHHHHHHH--HHhCCHHHHHHHHHHHHHHh
Confidence 999999999999985 67888888765 34599999999999999764
|
|
| >cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.2e-17 Score=176.71 Aligned_cols=330 Identities=12% Similarity=0.141 Sum_probs=210.3
Q ss_pred eEeeecCCCCCChhHhhHHHHhcccCCCCeEEEEEecCCCCChHHHHHHHhccCc-eEECCCC------CHHHHHHHHHh
Q 003557 427 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEH-FVDVSAM------SSDMIAKLINE 499 (811)
Q Consensus 427 rvg~~s~~~~~h~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~i~~ 499 (811)
+|.++++.++..++...+..+.+.+.+.+++|.+++........ ........ ...+... +...+.+.|++
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVK---PPIDATIILNLNMSKNPLSFLLALWKLRKILRQ 77 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCcc---chhhccceEEecccccchhhHHHHHHHHHHHHh
Confidence 36778888887888889999999998888888888754432111 11111111 1111110 12446788889
Q ss_pred CCCeEEEeCCCCCCCcchhhhhc------CCCceEEeccccCCCCCCCc----ccEEEecCccCCcC-C------CC-CC
Q 003557 500 DKIQILINLNGYTKGARNEIFAM------QPAPIQVSYMGFPGTTGASY----IDYLVTDEFVSPLR-Y------AH-IY 561 (811)
Q Consensus 500 ~~~dilv~~~~~~~~~~~~~~~~------r~Apvq~~~~g~~~t~g~~~----~d~~~~d~~~~p~~-~------~~-~~ 561 (811)
.++||+ |++.....+++. +.-|+.++..+......... +...+++....... . .. .-
T Consensus 78 ~~pdiv-----~~~~~~~~~~~~l~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 152 (360)
T cd04951 78 FKPDVV-----HAHMFHANIFARLLRLFLPSPPLICTAHSKNEGGRLRMLAYRLTDFLSDLTTNVSKEALDYFIASKAFN 152 (360)
T ss_pred cCCCEE-----EEcccchHHHHHHHHhhCCCCcEEEEeeccCchhHHHHHHHHHHhhccCceEEEcHHHHHHHHhccCCC
Confidence 999999 444332222221 22355444333221111100 00011122111111 1 11 12
Q ss_pred ccceEEcCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecC
Q 003557 562 SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRF 639 (811)
Q Consensus 562 ~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~ 639 (811)
.+++..+|++.-...... ..+.....|++++++++.++++.+++. .|+.+.+++++.++.++.|+.+|+++|.
T Consensus 153 ~~~~~~i~ng~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~ 227 (360)
T cd04951 153 ANKSFVVYNGIDTDRFRK-----DPARRLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGD 227 (360)
T ss_pred cccEEEEccccchhhcCc-----chHHHHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcC
Confidence 356666765432111100 001112356778898888888877755 5999999999999999999999999998
Q ss_pred ChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhH
Q 003557 640 PAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAG 718 (811)
Q Consensus 640 ~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~ 718 (811)
|+. .+.+++.+.+.|+ .++|.|.|.. .+....|..+|+++.|+.++| |.+++|||++|+|||+........-+.
T Consensus 228 g~~-~~~~~~~~~~~~~-~~~v~~~g~~--~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~- 302 (360)
T cd04951 228 GPL-RATLERLIKALGL-SNRVKLLGLR--DDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAGGVREVVG- 302 (360)
T ss_pred CCc-HHHHHHHHHhcCC-CCcEEEeccc--ccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecCCChhhEec-
Confidence 876 7788899999998 5899999953 456667899999999998888 999999999999999755433332222
Q ss_pred HHHHhcCCCCccccCCHHHHHHHHHHHh-cCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 003557 719 SLCLATGLGEEMIVNSMKEYEERAVSLA-LDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 783 (811)
Q Consensus 719 ~~l~~~g~~~~~v~~~~~~y~~~~~~l~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 783 (811)
..|. .+...|++++++.+.++. .+++.+..+++. +... ...|+.+.++++++++|+
T Consensus 303 ----~~g~--~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~--~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 303 ----DSGL--IVPISDPEALANKIDEILKMSGEERDIIGAR-RERI--VKKFSINSIVQQWLTLYT 359 (360)
T ss_pred ----CCce--EeCCCCHHHHHHHHHHHHhCCHHHHHHHHHH-HHHH--HHhcCHHHHHHHHHHHhh
Confidence 1121 123478999999999998 577777777766 5554 346999999999999996
|
In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-15 Score=163.93 Aligned_cols=237 Identities=24% Similarity=0.309 Sum_probs=203.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHc----
Q 003557 88 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT--------RPN-AIAFGNLASTYYERGQADMAILYYKQAIGC---- 154 (811)
Q Consensus 88 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 154 (811)
.|.-..+...++..|..+|++++|+..++.+++. .|. ......+|.+|..++++++|+.+|++++.+
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3445557778999999999999999999999998 455 455556999999999999999999999955
Q ss_pred ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------ChHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 003557 155 ----DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS--------HPQALTNLGNIYMEWNMLPAAASYYKATLAV 222 (811)
Q Consensus 155 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 222 (811)
+|....++.+|+.+|...|++++|..++++++++... -...+.+++.++..++++++|..++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 5566778999999999999999999999999986322 2356788999999999999999999999876
Q ss_pred c--------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003557 223 T--------TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID--------PLAADGLVNRGNTYKEIGRVTDAIQDYIR 286 (811)
Q Consensus 223 ~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 286 (811)
. +..+..+.+||.+|..+|++++|.+++++++.+. +.....+..+|..+.+.+++.+|.+.|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3 2335678999999999999999999999999873 23356889999999999999999999999
Q ss_pred HHhc-------CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 003557 287 AITI-------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL 324 (811)
Q Consensus 287 al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 324 (811)
+..+ .|+....+.+|+.+|..+|++++|+++.++++..
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9876 3555678999999999999999999999998743
|
|
| >PLN02939 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.9e-17 Score=180.95 Aligned_cols=176 Identities=13% Similarity=0.070 Sum_probs=140.3
Q ss_pred CCcCCCCCCC---CcEEEEecCCCC--CCCHHHHHHHHHHHhhcCCeEEEeecCChhh--HHHHHHHHHHcCCCCCceEE
Q 003557 591 PKRSDYGLPE---DKFIFACFNQLY--KMDPEIFNTWCNILRRVPNSALWLLRFPAAG--EMRLRAYAVAQGVQPDQIIF 663 (811)
Q Consensus 591 ~~r~~~gl~~---~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~--~~~l~~~~~~~gi~~~rv~~ 663 (811)
.+|+++||+. +.++||+++|+. |+.+.+++++.+++. ++.+|+|+|+|+.. +..++..+.++++ .++|.|
T Consensus 765 aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~--~dvqLVIvGdGp~~~~e~eL~~La~~l~l-~drV~F 841 (977)
T PLN02939 765 ALRKQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAE--LGGQFVLLGSSPVPHIQREFEGIADQFQS-NNNIRL 841 (977)
T ss_pred HHHHHhCCCcccccceEEEEeecCCcccChHHHHHHHHHHhh--cCCEEEEEeCCCcHHHHHHHHHHHHHcCC-CCeEEE
Confidence 4788999984 568999999884 999999999998875 57899999988642 4678888889998 689999
Q ss_pred cCCCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCC--------------
Q 003557 664 TDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGE-------------- 728 (811)
Q Consensus 664 ~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~-------------- 728 (811)
.|..+......+|..+|+||-|+.+++ |.|.+|||++|+|+| ++++| |+++
T Consensus 842 lG~~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPV-------Vs~vG-------GL~DtV~d~d~e~i~~eg 907 (977)
T PLN02939 842 ILKYDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPI-------VRKTG-------GLNDSVFDFDDETIPVEL 907 (977)
T ss_pred EeccCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEE-------EecCC-------CCcceeecCCccccccCC
Confidence 997665555567899999999999998 999999999999888 45555 4443
Q ss_pred --ccc--cCCHHHHHHHHHHHh----cCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHH
Q 003557 729 --EMI--VNSMKEYEERAVSLA----LDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 788 (811)
Q Consensus 729 --~~v--~~~~~~y~~~~~~l~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 788 (811)
.++ ..|++++.+.+.++. .|++.+.+|+++... ..|+++.++++++++|++++.+
T Consensus 908 ~NGfLf~~~D~eaLa~AL~rAL~~~~~dpe~~~~L~~~am~-----~dFSWe~~A~qYeeLY~~ll~~ 970 (977)
T PLN02939 908 RNGFTFLTPDEQGLNSALERAFNYYKRKPEVWKQLVQKDMN-----IDFSWDSSASQYEELYQRAVAR 970 (977)
T ss_pred CceEEecCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHHHh
Confidence 022 247888887766654 489998888875432 3499999999999999999875
|
|
| >PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.4e-17 Score=173.92 Aligned_cols=323 Identities=14% Similarity=0.195 Sum_probs=196.5
Q ss_pred ceEeeecCCCC-CChhHhhHHHHhcccCCC--CeEEEEEecCCCCChHHHHHHHhcc-CceEECC--C--CCHHHHHHHH
Q 003557 426 LRVGYVSSDFG-NHPLSHLMGSVFGMHNKE--NVEVFCYALSPNDGTEWRQRTQSEA-EHFVDVS--A--MSSDMIAKLI 497 (811)
Q Consensus 426 lrvg~~s~~~~-~h~~~~~l~~l~~~~d~~--~~ev~~y~~~~~~~~~~~~~~~~~~-~~~~~~~--~--~~~~~~~~~i 497 (811)
+||.++...+. .+++...+..+.+.+.+. .+++++++........+.+.+.... ..-..+. . .....+.+.|
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 80 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAWLKEIKYAQSFSNIKLSFLRRAKHVYNFSKWL 80 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHHHHhcchhcccccchhhhhcccHHHHHHHHHH
Confidence 47888877664 367888999999998877 7999988865433222222221000 0001111 0 1135678899
Q ss_pred HhCCCeEEEeCCCCCCCcchhhhhc---C--CCce-EEeccc--cCCCCCCCcccEEEecCccCCcCCCC-------CCc
Q 003557 498 NEDKIQILINLNGYTKGARNEIFAM---Q--PAPI-QVSYMG--FPGTTGASYIDYLVTDEFVSPLRYAH-------IYS 562 (811)
Q Consensus 498 ~~~~~dilv~~~~~~~~~~~~~~~~---r--~Apv-q~~~~g--~~~t~g~~~~d~~~~d~~~~p~~~~~-------~~~ 562 (811)
++.++||+ |++......++. + -.|+ .++|.- .+.........+..+|.++..+.... .-.
T Consensus 81 ~~~~~Dii-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~d~~i~~S~~~~~~~~~~~~~~ 155 (359)
T PRK09922 81 KETQPDIV-----ICIDVISCLYANKARKKSGKQFKIFSWPHFSLDHKKHAECKKITCADYHLAISSGIKEQMMARGISA 155 (359)
T ss_pred HhcCCCEE-----EEcCHHHHHHHHHHHHHhCCCCeEEEEecCcccccchhhhhhhhcCCEEEEcCHHHHHHHHHcCCCH
Confidence 99999999 555443323222 1 1133 233321 11111111111233344444333211 112
Q ss_pred cceEEcCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC----CCCCHHHHHHHHHHHhhcCCeEEEeec
Q 003557 563 EKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL----YKMDPEIFNTWCNILRRVPNSALWLLR 638 (811)
Q Consensus 563 e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~----~K~~~~~~~~~~~il~~~p~~~l~l~~ 638 (811)
+++..+|++.-... .. .+. +. .++.+++++++|+ .|....+++++.++. ++.+|+++|
T Consensus 156 ~ki~vi~N~id~~~------~~-~~~--~~------~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~---~~~~l~ivG 217 (359)
T PRK09922 156 QRISVIYNPVEIKT------II-IPP--PE------RDKPAVFLYVGRLKFEGQKNVKELFDGLSQTT---GEWQLHIIG 217 (359)
T ss_pred HHEEEEcCCCCHHH------cc-CCC--cc------cCCCcEEEEEEEEecccCcCHHHHHHHHHhhC---CCeEEEEEe
Confidence 34444444321100 00 010 00 1234666666664 488889999888763 378999999
Q ss_pred CChhhHHHHHHHHHHcCCCCCceEEcCCCC--hHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCccccc-CCcccc
Q 003557 639 FPAAGEMRLRAYAVAQGVQPDQIIFTDVAM--KQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLP-LEKMAT 714 (811)
Q Consensus 639 ~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~--~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~-g~~~~~ 714 (811)
+|+. .+.+++.+++.|+ .++|.|.|..+ .++....|..+|+++.|+.++| |.+++|||++|+|||+.. .....
T Consensus 218 ~g~~-~~~l~~~~~~~~l-~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~~- 294 (359)
T PRK09922 218 DGSD-FEKCKAYSRELGI-EQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSGPR- 294 (359)
T ss_pred CCcc-HHHHHHHHHHcCC-CCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCChH-
Confidence 9886 7889999999999 68999999764 3555667899999999999999 999999999999999765 22222
Q ss_pred chhHHHHHhcCCCCccc--cCCHHHHHHHHHHHhcCHHHH--HHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 003557 715 RVAGSLCLATGLGEEMI--VNSMKEYEERAVSLALDRQKL--QALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 787 (811)
Q Consensus 715 r~~~~~l~~~g~~~~~v--~~~~~~y~~~~~~l~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 787 (811)
.++.. |..+ ++ ..|++++++.+.++.+|++.| ..+++.+++ |..+.+++++-++|..+.+
T Consensus 295 ----eiv~~-~~~G-~lv~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 358 (359)
T PRK09922 295 ----DIIKP-GLNG-ELYTPGNIDEFVGKLNKVISGEVKYQHDAIPNSIER-------FYEVLYFKNLNNALFSKLQ 358 (359)
T ss_pred ----HHccC-CCce-EEECCCCHHHHHHHHHHHHhCcccCCHHHHHHHHHH-------hhHHHHHHHHHHHHHHHhc
Confidence 12222 4444 33 368999999999999999853 333333222 7788999999999987754
|
|
| >cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-16 Score=171.39 Aligned_cols=319 Identities=14% Similarity=0.167 Sum_probs=202.6
Q ss_pred eEeeecCCCC-CChhHhhHHHHhcccCCCCeEEEEEecCCCCChHHHHHHHhccCceEECC----------CCCHHHHHH
Q 003557 427 RVGYVSSDFG-NHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVS----------AMSSDMIAK 495 (811)
Q Consensus 427 rvg~~s~~~~-~h~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 495 (811)
||++++..+. ..++...+..+.+.+.+.+++|.+++..+..... .. +.. ...++.+. ......+.+
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~-~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPF-YE-LDP-KIKVIDLGDKRDSKLLARFKKLRRLRK 77 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCc-cc-cCC-ccceeecccccccchhccccchHHHHH
Confidence 5788888888 6777788888888887678899988876543110 00 111 11222221 123467899
Q ss_pred HHHhCCCeEEEeCCCCCCCcchhhhhcCCCceEEeccccCCCCC------------CCcccEEEecCccCCcCCCCCCcc
Q 003557 496 LINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG------------ASYIDYLVTDEFVSPLRYAHIYSE 563 (811)
Q Consensus 496 ~i~~~~~dilv~~~~~~~~~~~~~~~~r~Apvq~~~~g~~~t~g------------~~~~d~~~~d~~~~p~~~~~~~~e 563 (811)
.|+..++|++|-..++ ...-+..+..+..|+.+...+.+.... ++..|.+++..-..-.........
T Consensus 78 ~l~~~~~d~i~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~ 156 (348)
T cd03820 78 LLKNNKPDVVISFLTS-LLTFLASLGLKIVKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRALYYKKFNK 156 (348)
T ss_pred hhcccCCCEEEEcCch-HHHHHHHHhhccccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHHHHhhccCCC
Confidence 9999999999655544 011112222222254443333222111 233455444111110111122234
Q ss_pred ceEEcCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecCCh
Q 003557 564 KLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPA 641 (811)
Q Consensus 564 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~ 641 (811)
++..+|++..... ..+ . .+.+.++|+++++. .|+.+.++++|.++.+..|+.+|+++|.++
T Consensus 157 ~~~vi~~~~~~~~--------~~~----~-----~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~ 219 (348)
T cd03820 157 NVVVIPNPLPFPP--------EEP----S-----SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGP 219 (348)
T ss_pred CeEEecCCcChhh--------ccc----c-----CCCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 4445554321110 000 0 22344556666544 699999999999999889999999999887
Q ss_pred hhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHH
Q 003557 642 AGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSL 720 (811)
Q Consensus 642 ~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~ 720 (811)
. ...+.+.+.+.|+ .++|.|.|. .++....|+.+|+++.|+.++| |++++|||++|+|||+.+....... +
T Consensus 220 ~-~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~----~ 291 (348)
T cd03820 220 E-REALEALIKELGL-EDRVILLGF--TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSE----I 291 (348)
T ss_pred C-HHHHHHHHHHcCC-CCeEEEcCC--cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCchHh----h
Confidence 6 7778888899999 689999996 5677778899999999998888 9999999999999997643222211 1
Q ss_pred HHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHH
Q 003557 721 CLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 779 (811)
Q Consensus 721 l~~~g~~~~~v~--~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 779 (811)
+.. |... ++. .|++++++.+.++.+|++.++++++..+.... .|+++.++++++
T Consensus 292 ~~~-~~~g-~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 347 (348)
T cd03820 292 IED-GVNG-LLVPNGDVEALAEALLRLMEDEELRKRMGANARESAE---RFSIENIIKQWE 347 (348)
T ss_pred hcc-Ccce-EEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH---HhCHHHHHHHhc
Confidence 111 3233 343 46799999999999999999999998866543 399988887764
|
AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=159.03 Aligned_cols=285 Identities=18% Similarity=0.157 Sum_probs=229.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHH
Q 003557 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYY 136 (811)
Q Consensus 58 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~ 136 (811)
+.-....+..++...+|.+|+..+..+++..|++...|.+.+..+...|++++|....++.++++|. .......+.++.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 3445566778889999999999999999999999999999999999999999999999999999888 788888888888
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHcCChHHHH
Q 003557 137 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ---PSHPQALTNLGNIYMEWNMLPAAA 213 (811)
Q Consensus 137 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~ 213 (811)
..++..+|.+.++. ..++ ....|+..+++.+..+ |....+-..-+.++...|++++|.
T Consensus 129 a~~~~i~A~~~~~~--------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKS--------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred hhHHHHHHHHHhhh--------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 88888888877761 1111 1223333333333322 222234455667777777777777
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------------HHHHHHHHHHHHhCCHHHHH
Q 003557 214 SYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAA------------DGLVNRGNTYKEIGRVTDAI 281 (811)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~g~~~~A~ 281 (811)
..--..+++++.+.++++..|.+++..++.+.|+..|++++.++|+.. +.+...|.-..+.|++.+|.
T Consensus 190 ~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~ 269 (486)
T KOG0550|consen 190 SEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY 269 (486)
T ss_pred HHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence 777777777777777777777777777777777777777777777553 35677899999999999999
Q ss_pred HHHHHHHhcCCCc----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHH
Q 003557 282 QDYIRAITIRPTM----AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEG 357 (811)
Q Consensus 282 ~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~ 357 (811)
+.|..++.++|++ ...|.+++.+..++|+..+|+...+.+++++|....++...+.++..+++|++|.+.++.+.+
T Consensus 270 E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999986 457899999999999999999999999999999999999999999999999999999998876
Q ss_pred HHHH
Q 003557 358 IIRR 361 (811)
Q Consensus 358 l~~~ 361 (811)
.-..
T Consensus 350 ~~~s 353 (486)
T KOG0550|consen 350 LEKD 353 (486)
T ss_pred hccc
Confidence 5443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-15 Score=157.40 Aligned_cols=207 Identities=13% Similarity=0.144 Sum_probs=119.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh--
Q 003557 32 NLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG-DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP-- 108 (811)
Q Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-- 108 (811)
.++...++.++|+..+.++++++|++..+|...+.++...| ++++++..++++++.+|++..+|...+.++...|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhh
Confidence 33444566666777777777777777777777776666666 456677777777777777666666666666666552
Q ss_pred HHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc---CCH----HHHHH
Q 003557 109 QEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV---GRV----DEAIQ 180 (811)
Q Consensus 109 ~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~----~~A~~ 180 (811)
++++.+++++++.+|+ ..+|...+.++...|+++++++.+.++++.+|.+..+|+..+.++... |.+ +++++
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 4556666666666665 556666666666666666666666666666666666666666555443 111 24455
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 003557 181 CYNQCLSLQPSHPQALTNLGNIYME----WNMLPAAASYYKATLAVTTGLSAPFNNLAVIYK 238 (811)
Q Consensus 181 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 238 (811)
+..+++..+|++..+|..++.++.. .++..+|...+.+++...+.+..++..|+.+|.
T Consensus 205 y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 205 YTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 5555555555555555555555544 222334444444444444444444444444443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-15 Score=156.23 Aligned_cols=207 Identities=14% Similarity=0.139 Sum_probs=155.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCH--H
Q 003557 67 LFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG-MPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQA--D 142 (811)
Q Consensus 67 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~--~ 142 (811)
++...++.++|+..+.++++++|++..+|...+.++..+| ++++++..++++++.+|+ ..+|...+.++...|+. +
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 3444567788888888899999988888888888888887 578888888888888888 77888888888777763 6
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc---CCh----HHHHHH
Q 003557 143 MAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW---NML----PAAASY 215 (811)
Q Consensus 143 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~----~~A~~~ 215 (811)
+++.+++++++.+|++..+|...+.++...|+++++++.+.++++.+|.+..+|...+.++... |.+ ++++.+
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 7788888888888888888888888888888888888888888888888888888888777655 222 355666
Q ss_pred HHHHHhccCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 003557 216 YKATLAVTTGLSAPFNNLAVIYKQ----QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE 273 (811)
Q Consensus 216 ~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 273 (811)
..+++..+|++..+|+.++.++.. .++..+|.+.+.+++...|+++.++..++.+|..
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 666666677777676666666665 2344556666666666666666666666666654
|
|
| >PLN02846 digalactosyldiacylglycerol synthase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-16 Score=171.94 Aligned_cols=258 Identities=9% Similarity=-0.006 Sum_probs=166.8
Q ss_pred HHHHHHHHHhCCCeEEEeCCCCCCCc-chhhh--hc----CCCceEEeccccC-CC---CCC---C---------cccEE
Q 003557 490 SDMIAKLINEDKIQILINLNGYTKGA-RNEIF--AM----QPAPIQVSYMGFP-GT---TGA---S---------YIDYL 546 (811)
Q Consensus 490 ~~~~~~~i~~~~~dilv~~~~~~~~~-~~~~~--~~----r~Apvq~~~~g~~-~t---~g~---~---------~~d~~ 546 (811)
..++.+.|++.++||+ |.+.. .++.+ ++ |.-++..++.... .. .+. . .+-.+
T Consensus 105 ~~~i~~~l~~~~pDVI-----Hv~tP~~LG~~~~g~~~~~k~~~vV~tyHT~y~~Y~~~~~~g~~~~~l~~~~~~~~~r~ 179 (462)
T PLN02846 105 VGDISETIPDEEADIA-----VLEEPEHLTWYHHGKRWKTKFRLVIGIVHTNYLEYVKREKNGRVKAFLLKYINSWVVDI 179 (462)
T ss_pred hHHHHHHHHhcCCCEE-----EEcCchhhhhHHHHHHHHhcCCcEEEEECCChHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 4679999999999999 55433 22332 22 2224333443321 10 010 0 01002
Q ss_pred EecCccCCcCCCCCCccceEEcCCccccCCCccccccCCCCCCCCCcCCCCCCCCc--EEEEecCCCC--CCCHHHHHHH
Q 003557 547 VTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDK--FIFACFNQLY--KMDPEIFNTW 622 (811)
Q Consensus 547 ~~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~--~~~~~~~~~~--K~~~~~~~~~ 622 (811)
.+|.++.|+.....+.+..+..++..-. ....+.....+...+ +++. .+++.++|+. |+.+.+++++
T Consensus 180 ~~d~vi~pS~~~~~l~~~~i~~v~GVd~--------~~f~~~~~~~~~~~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~ 250 (462)
T PLN02846 180 YCHKVIRLSAATQDYPRSIICNVHGVNP--------KFLEIGKLKLEQQKN-GEQAFTKGAYYIGKMVWSKGYKELLKLL 250 (462)
T ss_pred hcCEEEccCHHHHHHhhCEEecCceech--------hhcCCCcccHhhhcC-CCCCcceEEEEEecCcccCCHHHHHHHH
Confidence 3677888876544344444443321111 011122122222232 4443 3577788874 9999999999
Q ss_pred HHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhC
Q 003557 623 CNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAG 701 (811)
Q Consensus 623 ~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g 701 (811)
.++.+..|+.+|+|+|+||. ++.|++.+.+.|++ .++ |.|..+.+++ |..+||||.|+.+++ |++++|||+||
T Consensus 251 ~~l~~~~~~~~l~ivGdGp~-~~~L~~~a~~l~l~-~~v-f~G~~~~~~~---~~~~DvFv~pS~~Et~g~v~lEAmA~G 324 (462)
T PLN02846 251 HKHQKELSGLEVDLYGSGED-SDEVKAAAEKLELD-VRV-YPGRDHADPL---FHDYKVFLNPSTTDVVCTTTAEALAMG 324 (462)
T ss_pred HHHHhhCCCeEEEEECCCcc-HHHHHHHHHhcCCc-EEE-ECCCCCHHHH---HHhCCEEEECCCcccchHHHHHHHHcC
Confidence 99988899999999999998 88999999999983 555 8897666554 466799999999998 99999999999
Q ss_pred CCcccccCCccccchhHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHH
Q 003557 702 LPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERS 781 (811)
Q Consensus 702 ~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 781 (811)
+|||+..... ..++.. |-.. +..+|.+++++++.++..++. ..++...++ .|+++..++++++.
T Consensus 325 ~PVVa~~~~~------~~~v~~-~~ng-~~~~~~~~~a~ai~~~l~~~~--~~~~~~a~~------~~SWe~~~~~l~~~ 388 (462)
T PLN02846 325 KIVVCANHPS------NEFFKQ-FPNC-RTYDDGKGFVRATLKALAEEP--APLTDAQRH------ELSWEAATERFLRV 388 (462)
T ss_pred CcEEEecCCC------cceeec-CCce-EecCCHHHHHHHHHHHHccCc--hhHHHHHHH------hCCHHHHHHHHHHH
Confidence 9999654221 133333 4444 556799999999998877532 222333222 49999999999999
Q ss_pred HH
Q 003557 782 YF 783 (811)
Q Consensus 782 y~ 783 (811)
|.
T Consensus 389 ~~ 390 (462)
T PLN02846 389 AD 390 (462)
T ss_pred hc
Confidence 86
|
|
| >cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-16 Score=171.59 Aligned_cols=178 Identities=10% Similarity=0.053 Sum_probs=134.3
Q ss_pred cCCCCCCCCcEEEEecCC-C--CCCCHHHHHHHHHHHhhcCCeEEEeecCCh--------hhHHHHHHHHHHcCC--CCC
Q 003557 593 RSDYGLPEDKFIFACFNQ-L--YKMDPEIFNTWCNILRRVPNSALWLLRFPA--------AGEMRLRAYAVAQGV--QPD 659 (811)
Q Consensus 593 r~~~gl~~~~~~~~~~~~-~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~--------~~~~~l~~~~~~~gi--~~~ 659 (811)
+...+++++.++++.++| + .|+.+.+++++.++.++.|+.+|+|+|++. ..+...++..++.+. +.+
T Consensus 202 ~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 281 (396)
T cd03818 202 PNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLS 281 (396)
T ss_pred cccccCCCCCeEEEEECCCcccccCHHHHHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcc
Confidence 344556667777777776 3 699999999999999999999999999632 111122333444443 358
Q ss_pred ceEEcCCCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCcccc--CCHH
Q 003557 660 QIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMK 736 (811)
Q Consensus 660 rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~--~~~~ 736 (811)
+|+|+|..+..+....|+.+|+++.|+..+| |.+++|||++|+|||+........-+. . |... +++ .|++
T Consensus 282 ~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~~g~~e~i~-----~-~~~G-~lv~~~d~~ 354 (396)
T cd03818 282 RVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTAPVREVIT-----D-GENG-LLVDFFDPD 354 (396)
T ss_pred eEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCCCCchhhcc-----c-CCce-EEcCCCCHH
Confidence 9999999999999999999999999975555 999999999999999655433332222 1 3444 443 4899
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHH
Q 003557 737 EYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 779 (811)
Q Consensus 737 ~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 779 (811)
++++.+.++.+|++.+.+|+++.++... ..|+++.+++++.
T Consensus 355 ~la~~i~~ll~~~~~~~~l~~~ar~~~~--~~fs~~~~~~~~~ 395 (396)
T cd03818 355 ALAAAVIELLDDPARRARLRRAARRTAL--RYDLLSVCLPRQL 395 (396)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHH--HhccHHHHHHHHh
Confidence 9999999999999999999999998873 3689888777653
|
ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II). |
| >PRK10307 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-16 Score=174.38 Aligned_cols=185 Identities=15% Similarity=0.136 Sum_probs=149.6
Q ss_pred CCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCC
Q 003557 591 PKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAM 668 (811)
Q Consensus 591 ~~r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~ 668 (811)
..|..+|++++.++++.+++. .|+...+++++.++ +..|+.+|+|+|+|+. ++.+++.+++.|++ +|.|+|..+
T Consensus 218 ~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l-~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~--~v~f~G~~~ 293 (412)
T PRK10307 218 ALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRL-RDRPDLIFVICGQGGG-KARLEKMAQCRGLP--NVHFLPLQP 293 (412)
T ss_pred HHHHHcCCCCCCEEEEEcCccccccCHHHHHHHHHHh-ccCCCeEEEEECCChh-HHHHHHHHHHcCCC--ceEEeCCCC
Confidence 367789999988888888876 59999999999876 5578999999999886 78899999999993 799999999
Q ss_pred hHHHHHhcCCCcEEecCCCCCC-----hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccc-cCCHHHHHHHH
Q 003557 669 KQEHIRRSSLADLFLDTPLCNA-----HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI-VNSMKEYEERA 742 (811)
Q Consensus 669 ~~~~~~~~~~~Dv~ld~~~~~g-----~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v-~~~~~~y~~~~ 742 (811)
..+....++.+||++-|+..++ ++.++|||++|+|||+...... .+ ..++. + ...++ ..|++++++.+
T Consensus 294 ~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~-~~~i~--~-~G~~~~~~d~~~la~~i 367 (412)
T PRK10307 294 YDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--EL-GQLVE--G-IGVCVEPESVEALVAAI 367 (412)
T ss_pred HHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hH-HHHHh--C-CcEEeCCCCHHHHHHHH
Confidence 8999999999999999986655 4557999999999996532110 00 12333 2 23133 36899999999
Q ss_pred HHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 003557 743 VSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 787 (811)
Q Consensus 743 ~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 787 (811)
.+|.+|++.+.+|+++.++.. ...||.+.+++++++.|+++..
T Consensus 368 ~~l~~~~~~~~~~~~~a~~~~--~~~fs~~~~~~~~~~~~~~~~~ 410 (412)
T PRK10307 368 AALARQALLRPKLGTVAREYA--ERTLDKENVLRQFIADIRGLVA 410 (412)
T ss_pred HHHHhCHHHHHHHHHHHHHHH--HHHcCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999876 3469999999999999998764
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-15 Score=166.41 Aligned_cols=321 Identities=18% Similarity=0.202 Sum_probs=269.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 003557 37 QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQ 116 (811)
Q Consensus 37 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 116 (811)
.++...|...|-+++++++..+.+|..+|.+|...-+...|.++|+++.++++.+..+....+..|....+++.|.....
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 35578899999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred HHHhhCCC---hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 003557 117 RAVQTRPN---AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP 193 (811)
Q Consensus 117 ~al~~~p~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 193 (811)
..-+..|. ...|..+|..|.+.++...|+..|+.++..+|.+.+.|..+|.+|...|++..|++.|.++..++|.+.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 77777765 567777999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC-------chHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------
Q 003557 194 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGL-------SAPFNNLAVIYKQQGNYADAISCYNEVLRI---------- 256 (811)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------- 256 (811)
...+..+.+....|+|.+|+..+...+...... .+.+..++..+.-.|=..+|..++++.++.
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~ 710 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQ 710 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999888665433 333444444444444444555544444331
Q ss_pred -------------------CC-----------------------------------------CCHHHHHHHHHHHHH---
Q 003557 257 -------------------DP-----------------------------------------LAADGLVNRGNTYKE--- 273 (811)
Q Consensus 257 -------------------~p-----------------------------------------~~~~~~~~la~~~~~--- 273 (811)
.| .++..|+++|..|..
T Consensus 711 ~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~ 790 (1238)
T KOG1127|consen 711 SDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFL 790 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHH
Confidence 00 012246677766665
Q ss_pred -----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCChhhH
Q 003557 274 -----IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDR 348 (811)
Q Consensus 274 -----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 348 (811)
..+...|+.++++++++..++...|+.||.+ ...|++.-|..+|-+.....|...-.|.|++.+.....+++.|
T Consensus 791 ~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 791 LLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred HcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHh
Confidence 1344578999999999999999999999988 6668999999999999999999999999999999888888888
Q ss_pred hHHHHHHHHH
Q 003557 349 DRMFSEVEGI 358 (811)
Q Consensus 349 ~~~~~~a~~l 358 (811)
...|..++.+
T Consensus 870 ~~af~~~qSL 879 (1238)
T KOG1127|consen 870 EPAFSSVQSL 879 (1238)
T ss_pred hHHHHhhhhc
Confidence 8877776654
|
|
| >cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.4e-17 Score=174.01 Aligned_cols=338 Identities=14% Similarity=0.163 Sum_probs=218.9
Q ss_pred eEeeecCCCCCC--hhHhhHHHHhcccCCCCeEEEEEecCCCCChHHHHHHHhccCc---eEECCC-----CCHHHHHHH
Q 003557 427 RVGYVSSDFGNH--PLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEH---FVDVSA-----MSSDMIAKL 496 (811)
Q Consensus 427 rvg~~s~~~~~h--~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~~~~ 496 (811)
||.+++..+..+ ++...+..+.+.+.+.+++|.+++................... +..... .....+...
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRL 80 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHH
Confidence 467777777554 5567778888888777899998887654332111100000000 000000 013457788
Q ss_pred HHhCCCeEEEeCCCCCCCcchhhhhcCCCceEEeccccCCCCC------------------CCcccEEEecCccCCcCCC
Q 003557 497 INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG------------------ASYIDYLVTDEFVSPLRYA 558 (811)
Q Consensus 497 i~~~~~dilv~~~~~~~~~~~~~~~~r~Apvq~~~~g~~~t~g------------------~~~~d~~~~d~~~~p~~~~ 558 (811)
++..++||++-...+..............|+.+...+...... +...|++++-.-..-....
T Consensus 81 ~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~ 160 (374)
T cd03801 81 LRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATREELR 160 (374)
T ss_pred hhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHH
Confidence 8889999996555554433321222344677666555432211 1233444432111111112
Q ss_pred CCCc---cceEEcCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeE
Q 003557 559 HIYS---EKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSA 633 (811)
Q Consensus 559 ~~~~---e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~ 633 (811)
..+. .++..+|+....... .+.....+...+.+.+.++++.+++. .|+.+.++++|..+.+..|+.+
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~ 232 (374)
T cd03801 161 ELGGVPPEKITVIPNGVDTERF--------RPAPRAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVR 232 (374)
T ss_pred hcCCCCCCcEEEecCccccccc--------CccchHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeE
Confidence 2222 355556653321111 00001122344455566777777765 6999999999999999999999
Q ss_pred EEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCcc
Q 003557 634 LWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKM 712 (811)
Q Consensus 634 l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~ 712 (811)
|+++|.++. ...+.+.+.+.+. .++|.|.|..+.++....++.+|+++.|+.++| |++++|||++|+|||+.....+
T Consensus 233 l~i~G~~~~-~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~~~ 310 (374)
T cd03801 233 LVIVGDGPL-REELEALAAELGL-GDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVGGI 310 (374)
T ss_pred EEEEeCcHH-HHHHHHHHHHhCC-CcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCCCh
Confidence 999997765 7778888888898 689999999998999999999999999987777 9999999999999998776554
Q ss_pred ccchhHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 003557 713 ATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 783 (811)
Q Consensus 713 ~~r~~~~~l~~~g~~~~~v~--~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 783 (811)
...+. . +-.. ++. .+++++++.+.++.+|++.+.++++..++.. ...|+++.+++++.++|+
T Consensus 311 ~~~~~-----~-~~~g-~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 374 (374)
T cd03801 311 PEVVE-----D-GETG-LLVPPGDPEALAEAILRLLDDPELRRRLGEAARERV--AERFSWDRVAARTEEVYY 374 (374)
T ss_pred hHHhc-----C-Ccce-EEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHhhC
Confidence 44332 1 2223 333 3479999999999999999999999988655 345999999999998873
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. |
| >cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=173.57 Aligned_cols=177 Identities=18% Similarity=0.217 Sum_probs=144.4
Q ss_pred cCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecCChhh-HHHHHHHHHHcCCCCCceEEcCCCCh
Q 003557 593 RSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG-EMRLRAYAVAQGVQPDQIIFTDVAMK 669 (811)
Q Consensus 593 r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~-~~~l~~~~~~~gi~~~rv~~~~~~~~ 669 (811)
|..++.+++.++++++++. .|+.+.++++|.++.++.|+.+|+++|.++.. ...++..+.+.|+ .++|.|.|..+.
T Consensus 194 ~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~ 272 (375)
T cd03821 194 RRKFPILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGL-EDRVTFTGMLYG 272 (375)
T ss_pred hhhccCCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCc-cceEEEcCCCCh
Confidence 5667788888898888876 59999999999999999999999999976443 3344555588898 589999999999
Q ss_pred HHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccccCCHHHHHHHHHHHhcC
Q 003557 670 QEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALD 748 (811)
Q Consensus 670 ~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~~~~~y~~~~~~l~~d 748 (811)
++....|..+|+++.|+.++| |++++|||++|+|||+..+.....-+. . +..- ++..+++++++.+.++.+|
T Consensus 273 ~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~~~~~-----~-~~~~-~~~~~~~~~~~~i~~l~~~ 345 (375)
T cd03821 273 EDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVPWQELIE-----Y-GCGW-VVDDDVDALAAALRRALEL 345 (375)
T ss_pred HHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCCHHHHhh-----c-CceE-EeCCChHHHHHHHHHHHhC
Confidence 999999999999999988777 999999999999999766544433332 2 2222 4556779999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCChHHHHHHHH
Q 003557 749 RQKLQALTNKLKSVRLTCPLFDTARWVKNLE 779 (811)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 779 (811)
++.+..++++.++.. ...|+++.++++++
T Consensus 346 ~~~~~~~~~~~~~~~--~~~~s~~~~~~~~~ 374 (375)
T cd03821 346 PQRLKAMGENGRALV--EERFSWTAIAQQLL 374 (375)
T ss_pred HHHHHHHHHHHHHHH--HHhcCHHHHHHHhh
Confidence 999999999998875 34599999988875
|
Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-14 Score=154.81 Aligned_cols=304 Identities=16% Similarity=0.004 Sum_probs=205.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 003557 20 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF---AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYL 96 (811)
Q Consensus 20 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 96 (811)
+|+.+.++..+|..+...|+.++|...+.++.+..|.+ .+.....+.++...|++++|...++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 68889999999999999999999888888888776644 556777788889999999999999999999999887766
Q ss_pred HHHHHHHHcCChH----HHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 003557 97 NLGNVYKALGMPQ----EAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKD 171 (811)
Q Consensus 97 ~la~~~~~~g~~~----~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 171 (811)
. +..+...|++. .+.+.+.......|. ......++.++...|++++|+..++++++.+|++..++..++.++..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 5 55555544443 344443332233444 55666788888889999999999999998888888888888999989
Q ss_pred cCCHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCc--hHHH---HHHHHHHHcCC
Q 003557 172 VGRVDEAIQCYNQCLSLQPSHP----QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS--APFN---NLAVIYKQQGN 242 (811)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~---~la~~~~~~g~ 242 (811)
.|++++|+..+++++...|.++ ..+..++.++...|++++|...|++++...|... .... .+...+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 9999999999988888776433 2455788888888888888888888865554211 1110 11222223332
Q ss_pred HHHHHHH--H-HHHHhcCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHHhC
Q 003557 243 YADAISC--Y-NEVLRIDPL--AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT---------MAEAHANLASAYKDS 308 (811)
Q Consensus 243 ~~~A~~~--~-~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~ 308 (811)
...+... + .......+. ........+.++...|+.++|...++........ ...+....+.++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 2222221 1 111111111 1222235666667777777777777766543211 233455566667777
Q ss_pred CCHHHHHHHHHHHHhc
Q 003557 309 GHVEAAIKSYKQALLL 324 (811)
Q Consensus 309 g~~~~A~~~~~~al~~ 324 (811)
|++++|.+.+..++.+
T Consensus 321 g~~~~A~~~L~~al~~ 336 (355)
T cd05804 321 GNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7777777777776654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.6e-17 Score=179.18 Aligned_cols=175 Identities=12% Similarity=0.092 Sum_probs=131.7
Q ss_pred CCCCCCCcEEEEecCCC--CCCCHHHHHHHHHH--HhhcCCeEEEeecCChhh----------HHHHHHHHHHcCCCCCc
Q 003557 595 DYGLPEDKFIFACFNQL--YKMDPEIFNTWCNI--LRRVPNSALWLLRFPAAG----------EMRLRAYAVAQGVQPDQ 660 (811)
Q Consensus 595 ~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~i--l~~~p~~~l~l~~~~~~~----------~~~l~~~~~~~gi~~~r 660 (811)
.++++++.+++++++|+ .|+.+.++++++++ ++..++.+ +++|+++.. .+.+...+.+.|+ .++
T Consensus 241 ~~~~~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~~l~-li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l-~~~ 318 (439)
T TIGR02472 241 PFLKDPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEMANLV-LVLGCRDDIRKMESQQREVLQKVLLLIDRYDL-YGK 318 (439)
T ss_pred hhccccCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhhccEE-EEeCCccccccccHHHHHHHHHHHHHHHHcCC-Cce
Confidence 35566667788888877 49999999999864 23334433 356765431 1234556788899 689
Q ss_pred eEEcCCCChHHHHHhcCCC----cEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhH--HHHHhcCCCCccc--
Q 003557 661 IIFTDVAMKQEHIRRSSLA----DLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAG--SLCLATGLGEEMI-- 731 (811)
Q Consensus 661 v~~~~~~~~~~~~~~~~~~----Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~--~~l~~~g~~~~~v-- 731 (811)
|+|+|..+..+...+|+.+ |+|+.|+.++| |++++|||++|+|||+ +++|. .++.. |.+. ++
T Consensus 319 V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~-------s~~gg~~eiv~~-~~~G-~lv~ 389 (439)
T TIGR02472 319 VAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVA-------TDDGGPRDIIAN-CRNG-LLVD 389 (439)
T ss_pred EEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEE-------eCCCCcHHHhcC-CCcE-EEeC
Confidence 9999988888877777765 99999998898 9999999999999994 44441 11111 2333 33
Q ss_pred cCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 003557 732 VNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 782 (811)
Q Consensus 732 ~~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 782 (811)
..|++++++.+.++.+|++.+++|+++.+++. ...|+++.++++++++.
T Consensus 390 ~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~--~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 390 VLDLEAIASALEDALSDSSQWQLWSRNGIEGV--RRHYSWDAHVEKYLRIL 438 (439)
T ss_pred CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHh
Confidence 35899999999999999999999999998876 44699999999988764
|
This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase. |
| >cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-16 Score=171.48 Aligned_cols=167 Identities=17% Similarity=0.156 Sum_probs=134.9
Q ss_pred EEEEecCC--CCCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCc
Q 003557 603 FIFACFNQ--LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 680 (811)
Q Consensus 603 ~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~D 680 (811)
++++++++ ..|+.+.+++++..+.++.|+.+|+++|.|+. .+.+++.+.+.|+ .++|.|.|..+.++...+|..+|
T Consensus 189 ~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~~-~~~~~~~~~~~~~-~~~v~~~g~~~~~~l~~~~~~ad 266 (367)
T cd05844 189 PRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDGPL-LAALEALARALGL-GGRVTFLGAQPHAEVRELMRRAR 266 (367)
T ss_pred cEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCchH-HHHHHHHHHHcCC-CCeEEECCCCCHHHHHHHHHhCC
Confidence 34444443 46999999999999999999999999998876 6788999999999 68999999999999999999999
Q ss_pred EEecCCC------CCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHH
Q 003557 681 LFLDTPL------CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQK 751 (811)
Q Consensus 681 v~ld~~~------~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~--~~~~~y~~~~~~l~~d~~~ 751 (811)
+++.|+. .+| |++++|||++|+|||+.+......-+. . |-.. ++. .|++++++.+.++.+|++.
T Consensus 267 ~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~-----~-~~~g-~~~~~~d~~~l~~~i~~l~~~~~~ 339 (367)
T cd05844 267 IFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPEAVE-----D-GETG-LLVPEGDVAALAAALGRLLADPDL 339 (367)
T ss_pred EEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchhhee-----c-CCee-EEECCCCHHHHHHHHHHHHcCHHH
Confidence 9999874 355 999999999999999655433322211 1 2222 333 4899999999999999999
Q ss_pred HHHHHHHHHhhcccCCCCChHHHHHHHHH
Q 003557 752 LQALTNKLKSVRLTCPLFDTARWVKNLER 780 (811)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 780 (811)
+.+++.+.++.. ...|+++.+++++++
T Consensus 340 ~~~~~~~a~~~~--~~~~s~~~~~~~l~~ 366 (367)
T cd05844 340 RARMGAAGRRRV--EERFDLRRQTAKLEA 366 (367)
T ss_pred HHHHHHHHHHHH--HHHCCHHHHHHHHhc
Confidence 999999888876 345999999998875
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center |
| >PLN02316 synthase/transferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=180.87 Aligned_cols=339 Identities=11% Similarity=-0.016 Sum_probs=211.4
Q ss_pred CccceEeeecCCCCC----ChhHhhHHHHhcccCCCCeEEEEEecCCCCC-hHHHHHHHh------------------cc
Q 003557 423 LRRLRVGYVSSDFGN----HPLSHLMGSVFGMHNKENVEVFCYALSPNDG-TEWRQRTQS------------------EA 479 (811)
Q Consensus 423 ~~~lrvg~~s~~~~~----h~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~-~~~~~~~~~------------------~~ 479 (811)
..++||.+||+.+.. .+.+..+.+|-+.+-+.+.+|.++...-..- ......+.. .+
T Consensus 585 ~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G 664 (1036)
T PLN02316 585 EPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFGKVEG 664 (1036)
T ss_pred CCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEEEEECC
Confidence 346999999998843 4566788888888777777777766532110 000000100 00
Q ss_pred CceEECCC---C----------CH--------HHHHHHHHh--CCCeEEEeCCCCCCCcchhhhhc-----------CCC
Q 003557 480 EHFVDVSA---M----------SS--------DMIAKLINE--DKIQILINLNGYTKGARNEIFAM-----------QPA 525 (811)
Q Consensus 480 ~~~~~~~~---~----------~~--------~~~~~~i~~--~~~dilv~~~~~~~~~~~~~~~~-----------r~A 525 (811)
..++.+.. + ++ ..+.+.++. .++||+ |+|.....+++. ...
T Consensus 665 V~vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDII-----HaHDW~talva~llk~~~~~~~~~~~ 739 (1036)
T PLN02316 665 LSVYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDII-----HCHDWSSAPVAWLFKDHYAHYGLSKA 739 (1036)
T ss_pred cEEEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEE-----EECCChHHHHHHHHHHhhhhhccCCC
Confidence 11111111 1 11 124455544 489999 888654333221 225
Q ss_pred ceEEeccccC--C---CCCCCcccEEEecC------ccCCcCCCCCCccceEEcCCccccCCCccc-cccCC---CC---
Q 003557 526 PIQVSYMGFP--G---TTGASYIDYLVTDE------FVSPLRYAHIYSEKLVHVPHCYFVNDYKQK-NMDVL---DP--- 587 (811)
Q Consensus 526 pvq~~~~g~~--~---t~g~~~~d~~~~d~------~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~-~~~~~---~~--- 587 (811)
|+.+|..+.. . ..++...|.+++-. +... .......+++..+|++.-...+.+. .+..+ .+
T Consensus 740 p~V~TiHnl~~~~n~lk~~l~~AD~ViTVS~tya~EI~~~-~~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~ 818 (1036)
T PLN02316 740 RVVFTIHNLEFGANHIGKAMAYADKATTVSPTYSREVSGN-SAIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENV 818 (1036)
T ss_pred CEEEEeCCcccchhHHHHHHHHCCEEEeCCHHHHHHHHhc-cCcccccCCEEEEECCccccccCCcccccccccCCchhh
Confidence 7777764421 0 11233446665411 1110 0011124678778875533221110 00010 00
Q ss_pred ------CCCCCcCCCCCCC-CcEEEEecCCCC--CCCHHHHHHHHHHHhhcCCeEEEeecCChhh--HHHHHHHHHHcCC
Q 003557 588 ------NCQPKRSDYGLPE-DKFIFACFNQLY--KMDPEIFNTWCNILRRVPNSALWLLRFPAAG--EMRLRAYAVAQGV 656 (811)
Q Consensus 588 ------~~~~~r~~~gl~~-~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~--~~~l~~~~~~~gi 656 (811)
....+|.++||+. +.+++++++|+. |+.+.+++++.++++ ++++|+|+|.|+.. +..+++++.++|+
T Consensus 819 ~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~--~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~ 896 (1036)
T PLN02316 819 VEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE--RNGQVVLLGSAPDPRIQNDFVNLANQLHS 896 (1036)
T ss_pred hhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh--cCcEEEEEeCCCCHHHHHHHHHHHHHhCc
Confidence 0112578899984 679999999885 999999999999886 46899999988642 4678888888887
Q ss_pred C-CCceEEcCCCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccccC-
Q 003557 657 Q-PDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN- 733 (811)
Q Consensus 657 ~-~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~- 733 (811)
. +++|.|.+..+..--..+|+.+||||-||.+++ |+|.+|||++|+|+| ++++| |++| .|.+
T Consensus 897 ~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppV-------vs~vG-------GL~D-tV~d~ 961 (1036)
T PLN02316 897 SHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPV-------VRKTG-------GLFD-TVFDV 961 (1036)
T ss_pred cCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeE-------EEcCC-------CcHh-hcccc
Confidence 4 579999874332221257899999999999998 999999999999888 56676 6665 4432
Q ss_pred ----------------------CHHHHHHHHHHHhcC-HHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHH
Q 003557 734 ----------------------SMKEYEERAVSLALD-RQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMW 786 (811)
Q Consensus 734 ----------------------~~~~y~~~~~~l~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~ 786 (811)
|++++...+.+++.+ ++.+..+++..+..+ ...|++++++++++++|+++.
T Consensus 962 d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m--~~dFSW~~~A~~Y~~LY~~a~ 1035 (1036)
T PLN02316 962 DHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVM--EQDWSWNRPALDYMELYHSAR 1035 (1036)
T ss_pred ccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--HhhCCHHHHHHHHHHHHHHHh
Confidence 678888887777765 355556676666665 456999999999999998864
|
|
| >TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-16 Score=172.04 Aligned_cols=183 Identities=14% Similarity=0.144 Sum_probs=141.4
Q ss_pred CcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhcCCeEEEeecCChhh---HHHHHHHHHHcCCCCCceEEc-C
Q 003557 592 KRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPNSALWLLRFPAAG---EMRLRAYAVAQGVQPDQIIFT-D 665 (811)
Q Consensus 592 ~r~~~gl~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~---~~~l~~~~~~~gi~~~rv~~~-~ 665 (811)
.+.++|++++.++|+.++|+. |+.+.+++++.++. ++.+|+++|+++.. .+.+++.+...+...++|+|. |
T Consensus 191 ~~~~~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~---~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 267 (388)
T TIGR02149 191 VLDRYGIDRSRPYILFVGRITRQKGVPHLLDAVHYIP---KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINK 267 (388)
T ss_pred HHHHhCCCCCceEEEEEcccccccCHHHHHHHHHHHh---hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecC
Confidence 567889998888888888774 99999999998774 46778887765431 356677777777755667775 5
Q ss_pred CCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCcccc--CCH------H
Q 003557 666 VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSM------K 736 (811)
Q Consensus 666 ~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~--~~~------~ 736 (811)
..+..+....|..+|++|-|+.++| |++++|||++|+|||+........ ++.. |..+ ++. .+. +
T Consensus 268 ~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~~~e-----~i~~-~~~G-~~~~~~~~~~~~~~~ 340 (388)
T TIGR02149 268 MLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATGGIPE-----VVVD-GETG-FLVPPDNSDADGFQA 340 (388)
T ss_pred CCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCCCHHH-----HhhC-CCce-EEcCCCCCcccchHH
Confidence 7888999999999999999998888 999999999999999654332222 2211 3333 332 344 7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHH
Q 003557 737 EYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMW 786 (811)
Q Consensus 737 ~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~ 786 (811)
++++.+.++.+|++.+++|++..++.. ...|+++.+++++.++|++++
T Consensus 341 ~l~~~i~~l~~~~~~~~~~~~~a~~~~--~~~~s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 341 ELAKAINILLADPELAKKMGIAGRKRA--EEEFSWGSIAKKTVEMYRKVL 388 (388)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHhhC
Confidence 899999999999999999999988866 335999999999999998763
|
This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-13 Score=142.20 Aligned_cols=351 Identities=14% Similarity=0.063 Sum_probs=230.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 003557 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 81 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 81 (811)
.+|+|++|.+...+++...|++..++.....++.+.++|++|+...++-....-.+ ...+..+.|.++.+..++|+..+
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHH
Confidence 57899999999999999999999999999999999999999995554432222222 22378999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCC-
Q 003557 82 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN---AIAFGNLASTYYERGQADMAILYYKQAIGCDPR- 157 (811)
Q Consensus 82 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 157 (811)
+ ..++.+.......+++++++|+|++|...|+...+.+.+ .....++..+-.. ..+ . ..+.....|.
T Consensus 103 ~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~-~-~~q~v~~v~e~ 173 (652)
T KOG2376|consen 103 K---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV-Q-LLQSVPEVPED 173 (652)
T ss_pred h---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH-H-HHHhccCCCcc
Confidence 8 456666778899999999999999999999999775433 1111111111000 000 0 1222222222
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CC--C-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 003557 158 FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ--------PS--H-----PQALTNLGNIYMEWNMLPAAASYYKATLAV 222 (811)
Q Consensus 158 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~--~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 222 (811)
..+.+++.+.++...|+|.+|++.+++++++. .+ + ..+...++.++..+|+.++|...|...++.
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 44566666666666666666666666663321 00 0 013445666666666666666666666655
Q ss_pred cCCCch-------------------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Q 003557 223 TTGLSA-------------------------------------------------PFNNLAVIYKQQGNYADAISCYNEV 253 (811)
Q Consensus 223 ~~~~~~-------------------------------------------------~~~~la~~~~~~g~~~~A~~~~~~a 253 (811)
++.+.. .+.+.+.+.+..+..+.+.+.....
T Consensus 254 ~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l 333 (652)
T KOG2376|consen 254 NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL 333 (652)
T ss_pred cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence 543321 1223333333334444444433333
Q ss_pred HhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHhCCCHHHHHHHHH--------HHHhc
Q 003557 254 LRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM-AEAHANLASAYKDSGHVEAAIKSYK--------QALLL 324 (811)
Q Consensus 254 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~ 324 (811)
-...|....-.........+...+.+|.+.+....+.+|.+ ..+...++.+...+|+++.|++.+. ...+.
T Consensus 334 p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~ 413 (652)
T KOG2376|consen 334 PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA 413 (652)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence 33333333222233333333347889999999999989887 6688889999999999999999999 44333
Q ss_pred CCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHHHHHh
Q 003557 325 RPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQV 363 (811)
Q Consensus 325 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l~~~~~ 363 (811)
-..+.+...+...+...++-+.|...+.++..+++.+.
T Consensus 414 -~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~ 451 (652)
T KOG2376|consen 414 -KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQ 451 (652)
T ss_pred -ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhc
Confidence 23455666677777788888889999999999988765
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-13 Score=148.92 Aligned_cols=309 Identities=15% Similarity=0.085 Sum_probs=233.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHH
Q 003557 54 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF---PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG 129 (811)
Q Consensus 54 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~ 129 (811)
+|+.+.++..+|.++...|+.+.+...+.++.+..+.+ .+.....+..+...|++++|...++++++.+|+ ..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 79999999999999999999999999999988877654 446777889999999999999999999999998 54544
Q ss_pred hHHHHHHHcCC----HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 003557 130 NLASTYYERGQ----ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME 205 (811)
Q Consensus 130 ~la~~~~~~g~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 205 (811)
. +..+...|+ ...+.+.+......+|.....+..+|.++...|++++|+..++++++..|+++.++..++.++..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 3 444544444 44444444443356777777888999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhccCCCch----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHH---HHHHHHHHhCC
Q 003557 206 WNMLPAAASYYKATLAVTTGLSA----PFNNLAVIYKQQGNYADAISCYNEVLRIDPL--AADGLV---NRGNTYKEIGR 276 (811)
Q Consensus 206 ~g~~~~A~~~~~~~l~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~---~la~~~~~~g~ 276 (811)
.|++++|+.++++.+...|..+. .+..++.++...|++++|+..|++++...|. ...... .+...+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 99999999999999998765432 3567999999999999999999999876652 222111 22233334454
Q ss_pred HHHHHHH--H-HHHHhcCCC--cHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---------ChHHHHHHHHHhhhc
Q 003557 277 VTDAIQD--Y-IRAITIRPT--MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD---------FPEATCNLLHTLQCV 342 (811)
Q Consensus 277 ~~~A~~~--~-~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~l~~~~~~~ 342 (811)
...+..+ . .......+. ........+.++...|+.++|...++.+....-. ........+..+...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3333333 1 111111121 2223346788889999999999999887664322 233445556677889
Q ss_pred CChhhHhHHHHHHHHHHHHHh
Q 003557 343 CSWEDRDRMFSEVEGIIRRQV 363 (811)
Q Consensus 343 ~~~~~a~~~~~~a~~l~~~~~ 363 (811)
|++++|...+.++..+...+.
T Consensus 321 g~~~~A~~~L~~al~~a~~~g 341 (355)
T cd05804 321 GNYATALELLGPVRDDLARIG 341 (355)
T ss_pred CCHHHHHHHHHHHHHHHHHhC
Confidence 999999999999998876553
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-16 Score=170.61 Aligned_cols=177 Identities=21% Similarity=0.308 Sum_probs=141.8
Q ss_pred cCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChH
Q 003557 593 RSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQ 670 (811)
Q Consensus 593 r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~ 670 (811)
+..++++++.++++++++. .|+.+.++++|.++.+..|+.+|+++|.++. ...+++.+.+.++ .++|.|.|..+..
T Consensus 193 ~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~-~~~~~~~~~~~~~-~~~v~~~g~~~~~ 270 (374)
T cd03817 193 RRKLGIPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPE-REELEELARELGL-ADRVIFTGFVPRE 270 (374)
T ss_pred HHhcCCCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCch-HHHHHHHHHHcCC-CCcEEEeccCChH
Confidence 5566777777888888765 5899999999999988889999999998876 7788888888998 6899999999999
Q ss_pred HHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccccC-CHHHHHHHHHHHhcC
Q 003557 671 EHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN-SMKEYEERAVSLALD 748 (811)
Q Consensus 671 ~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~-~~~~y~~~~~~l~~d 748 (811)
+....++.+|+++.|+..+| |++++|||++|+|||+........-+. . |-.+ ++.+ +.+++++.+.++.+|
T Consensus 271 ~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~~~~~~i~-----~-~~~g-~~~~~~~~~~~~~i~~l~~~ 343 (374)
T cd03817 271 ELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAPGLPDLVA-----D-GENG-FLFPPGDEALAEALLRLLQD 343 (374)
T ss_pred HHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCCCChhhhee-----c-Ccee-EEeCCCCHHHHHHHHHHHhC
Confidence 99999999999999987766 999999999999999766544333222 1 2334 3433 333999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 003557 749 RQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 784 (811)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 784 (811)
++.++.++++.++.... ++ +++.++++|++
T Consensus 344 ~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~ 373 (374)
T cd03817 344 PELRRRLSKNAEESAEK---FS---FAKKVEKLYEE 373 (374)
T ss_pred hHHHHHHHHHHHHHHHH---HH---HHHHHHHHHhc
Confidence 99999999998887633 33 67888887765
|
UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol. |
| >cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.8e-16 Score=168.88 Aligned_cols=320 Identities=14% Similarity=0.125 Sum_probs=200.9
Q ss_pred eEeeecCCCCCChhHhhHHHHhcccCCCCeEEEEEecCCCCChHHHHHHHhccCceEEC----CCC-CHHHHHHHHHhCC
Q 003557 427 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDV----SAM-SSDMIAKLINEDK 501 (811)
Q Consensus 427 rvg~~s~~~~~h~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~i~~~~ 501 (811)
||.|++..|... ...++..+++.+.+.+++|.+++..+...................+ ..+ ....+.+.+++.+
T Consensus 1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T cd03799 1 KIAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLG 79 (355)
T ss_pred CEEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 478888887543 4566777777777778899888866543211111011111000000 000 1244667778899
Q ss_pred CeEEEeCCCCCCCcchhhhhcCC--CceEEeccccCCCCC---------CCcccEEEecCccCCcCC-----CC---CCc
Q 003557 502 IQILINLNGYTKGARNEIFAMQP--APIQVSYMGFPGTTG---------ASYIDYLVTDEFVSPLRY-----AH---IYS 562 (811)
Q Consensus 502 ~dilv~~~~~~~~~~~~~~~~r~--Apvq~~~~g~~~t~g---------~~~~d~~~~d~~~~p~~~-----~~---~~~ 562 (811)
+||++.-.++... ....+..+. .|+.++..|+..... +...|.+++ +... .. ...
T Consensus 80 ~Dii~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~-----~s~~~~~~l~~~~~~~~ 153 (355)
T cd03799 80 IDHIHAHFGTTPA-TVAMLASRLGGIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVA-----ISEYNRQQLIRLLGCDP 153 (355)
T ss_pred CCEEEECCCCchH-HHHHHHHHhcCCCEEEEEecccccccCchHHHHHHHhhCCEEEE-----CCHHHHHHHHHhcCCCc
Confidence 9999433322111 112222222 355555544432111 122344443 3332 11 223
Q ss_pred cceEEcCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecCC
Q 003557 563 EKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFP 640 (811)
Q Consensus 563 e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~ 640 (811)
+++..+|++.-... ..+.. ...+.+.++++.+++. .|+.+.+++++.++.+..|+.+|.++|.+
T Consensus 154 ~~~~vi~~~~d~~~--------~~~~~------~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~ 219 (355)
T cd03799 154 DKIHVVHCGVDLER--------FPPRP------PPPPGEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDG 219 (355)
T ss_pred ccEEEEeCCcCHHH--------cCCcc------ccccCCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECC
Confidence 45555554321110 00100 1123344566666654 69999999999998888899999999988
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCC------CC-hhHHHHHHHhCCCcccccCCccc
Q 003557 641 AAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLC------NA-HTTGTDILWAGLPMITLPLEKMA 713 (811)
Q Consensus 641 ~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~------~g-~~t~~eal~~g~Pvvt~~g~~~~ 713 (811)
+. ...+.+.+++.++ .++|.|.|..+.++....|+.+|++|.|+.+ +| |++++|||++|+|||+.......
T Consensus 220 ~~-~~~~~~~~~~~~~-~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~ 297 (355)
T cd03799 220 PL-RDELEALIAELGL-EDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIP 297 (355)
T ss_pred cc-HHHHHHHHHHcCC-CCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcc
Confidence 76 7788888999998 6899999999989999999999999999876 66 99999999999999976543333
Q ss_pred cchhHHHHHhcCCCCcccc-CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHH
Q 003557 714 TRVAGSLCLATGLGEEMIV-NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKN 777 (811)
Q Consensus 714 ~r~~~~~l~~~g~~~~~v~-~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (811)
. ++.. +-...++. .|++++++.+..+..|++.+..+++..++... ..|+.+.++++
T Consensus 298 ~-----~i~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~--~~~s~~~~~~~ 354 (355)
T cd03799 298 E-----LVED-GETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVE--EEFDIRKQAAR 354 (355)
T ss_pred h-----hhhC-CCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH--HhcCHHHHhhc
Confidence 2 2222 32331232 38999999999999999999999999988763 35888887764
|
amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor. |
| >cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=164.67 Aligned_cols=176 Identities=19% Similarity=0.228 Sum_probs=135.8
Q ss_pred CcCCCCCCCCcEE--EEecCCC--CCCCHHHHHHHHHHHhh-cCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCC
Q 003557 592 KRSDYGLPEDKFI--FACFNQL--YKMDPEIFNTWCNILRR-VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDV 666 (811)
Q Consensus 592 ~r~~~gl~~~~~~--~~~~~~~--~K~~~~~~~~~~~il~~-~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~ 666 (811)
.+..++++++..+ |++.... .|+.+.++++|..+.++ .|+.+++++|.++. ... .++ .++|.|+|.
T Consensus 181 ~~~~~~~~~~~~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~-~~~-------~~~-~~~v~~~g~ 251 (365)
T cd03825 181 ARKRLGLPADKKIILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDP-EIP-------PDL-PFPVHYLGS 251 (365)
T ss_pred HHHHhCCCCCCeEEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCch-hhh-------ccC-CCceEecCC
Confidence 5667788776554 4444444 79999999999987665 68899999998754 211 155 578999998
Q ss_pred CC-hHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCcccc--CCHHHHHHHH
Q 003557 667 AM-KQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERA 742 (811)
Q Consensus 667 ~~-~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~--~~~~~y~~~~ 742 (811)
.+ ..+...+|+.+|+++.|+-++| |.+++|||++|+|||+.....+..-+.. +..+ ++. .|++++++.+
T Consensus 252 ~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~------~~~g-~~~~~~~~~~~~~~l 324 (365)
T cd03825 252 LNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDIVDH------GVTG-YLAKPGDPEDLAEGI 324 (365)
T ss_pred cCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChhheeC------CCce-EEeCCCCHHHHHHHH
Confidence 87 6677788999999999987777 9999999999999997654444433321 2233 333 3789999999
Q ss_pred HHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHH
Q 003557 743 VSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKM 785 (811)
Q Consensus 743 ~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~ 785 (811)
.++.+|++.+.+++++.++.. ...|+.+.++++++++|+++
T Consensus 325 ~~l~~~~~~~~~~~~~~~~~~--~~~~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 325 EWLLADPDEREELGEAARELA--ENEFDSRVQAKRYLSLYEEL 365 (365)
T ss_pred HHHHhCHHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHhhC
Confidence 999999999999999988876 34599999999999999763
|
wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis. |
| >cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.8e-16 Score=166.02 Aligned_cols=317 Identities=12% Similarity=0.130 Sum_probs=197.9
Q ss_pred CCCChhHhhHHHHhcccCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCC---------CHHHHHHHHHhCCCeEE
Q 003557 435 FGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM---------SSDMIAKLINEDKIQIL 505 (811)
Q Consensus 435 ~~~h~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~dil 505 (811)
+...++...+..+.+.+.+.+++|++++.... ..+.+...+..++.+... ....+.+.++..++||+
T Consensus 7 ~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dii 82 (355)
T cd03819 7 LESGGVERGTLELARALVERGHRSLVASAGGR----LVAELEAEGSRHIKLPFISKNPLRILLNVARLRRLIREEKVDIV 82 (355)
T ss_pred hccCcHHHHHHHHHHHHHHcCCEEEEEcCCCc----hHHHHHhcCCeEEEccccccchhhhHHHHHHHHHHHHHcCCCEE
Confidence 33466778888888888888899998875422 233444444444443311 12457788899999999
Q ss_pred EeCCCCCCCcchhh---hhc--CCCceEEeccccCCCCC-----CCcccEEEecCccCCcCCC---CCCccceEEcCCcc
Q 003557 506 INLNGYTKGARNEI---FAM--QPAPIQVSYMGFPGTTG-----ASYIDYLVTDEFVSPLRYA---HIYSEKLVHVPHCY 572 (811)
Q Consensus 506 v~~~~~~~~~~~~~---~~~--r~Apvq~~~~g~~~t~g-----~~~~d~~~~d~~~~p~~~~---~~~~e~~~~lp~~~ 572 (811)
+ +++..... +.. .-.|+..++.|+....+ +...|.+++-.-....... ....+++..+|++.
T Consensus 83 ~-----~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~~~~~~~~k~~~i~ngi 157 (355)
T cd03819 83 H-----ARSRAPAWSAYLAARRTRPPFVTTVHGFYSVNFRYNAIMARGDRVIAVSNFIADHIRENYGVDPDRIRVIPRGV 157 (355)
T ss_pred E-----ECCCchhHHHHHHHHhcCCCEEEEeCCchhhHHHHHHHHHhcCEEEEeCHHHHHHHHHhcCCChhhEEEecCCc
Confidence 4 44322222 221 23577766666532221 1233444431100000001 11235666666543
Q ss_pred ccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecCChhh---HHHH
Q 003557 573 FVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG---EMRL 647 (811)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~---~~~l 647 (811)
-....... ..........|..++++++.++++.++|. .|+.+.+++++..+.+..|+.+|+++|.++.. .+.+
T Consensus 158 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~ 235 (355)
T cd03819 158 DLDRFDPG--AVPPERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAEL 235 (355)
T ss_pred cccccCcc--ccchHHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHH
Confidence 21111000 00000000135667788888888888876 59999999999999888889999999977542 2345
Q ss_pred HHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCC-CCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcC
Q 003557 648 RAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTP-LCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATG 725 (811)
Q Consensus 648 ~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~-~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g 725 (811)
.+.+.+.|+ .++|.|.|. .++....+..+|+++.|+ .++| |++++|||++|+|||+........-+ .. |
T Consensus 236 ~~~~~~~~~-~~~v~~~g~--~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~~~e~i-----~~-~ 306 (355)
T cd03819 236 LELIKRLGL-QDRVTFVGH--CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGGARETV-----RP-G 306 (355)
T ss_pred HHHHHHcCC-cceEEEcCC--cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCCcHHHH-----hC-C
Confidence 667788898 589999997 556777789999999998 5666 99999999999999976543333222 22 3
Q ss_pred CCCccc-cCCHHHHHHHHHHHh-cCHHHHHHHHHHHHhhcccCCCCChHH
Q 003557 726 LGEEMI-VNSMKEYEERAVSLA-LDRQKLQALTNKLKSVRLTCPLFDTAR 773 (811)
Q Consensus 726 ~~~~~v-~~~~~~y~~~~~~l~-~d~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (811)
..+.++ .+|++++++.+..+. .|++.+.+++++.++.. ...|+.+.
T Consensus 307 ~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~--~~~f~~~~ 354 (355)
T cd03819 307 ETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCV--ETLFSYDR 354 (355)
T ss_pred CceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH--HHhhhhcc
Confidence 233122 358899998875444 58999999999998876 33566543
|
WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-13 Score=133.65 Aligned_cols=344 Identities=16% Similarity=0.101 Sum_probs=248.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 003557 2 RKGRLNEAAQCCRQALALNPLLV-DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 80 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 80 (811)
.+.+|..|+.+++-.+..+.+.. .....+|.+++..|+|++|+..|.-+.+.+.-+.+.+.+++.+++-.|.|.+|...
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence 45788999999988776554333 56677899999999999999999999887777789999999999999999999887
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Q 003557 81 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE 160 (811)
Q Consensus 81 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 160 (811)
-.++ |+++-....+-.+..+.|+-++-...-+.. + ...+-...++.+.+..-.|++|++.|.+.+..+|+...
T Consensus 114 ~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~L-q--D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a 186 (557)
T KOG3785|consen 114 AEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSL-Q--DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA 186 (557)
T ss_pred HhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHH-h--hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 7665 555555555555556666655544433322 2 11355566777777788888899999988888888887
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc--CChH----------------HHHHHHHH----
Q 003557 161 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW--NMLP----------------AAASYYKA---- 218 (811)
Q Consensus 161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~----------------~A~~~~~~---- 218 (811)
.-..++.+|.++.-++-+.+.+.-.++..|+++-+.+..+...++. |+.. .+..+.+.
T Consensus 187 lNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVv 266 (557)
T KOG3785|consen 187 LNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVV 266 (557)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEE
Confidence 7788888888888888888888888888888887776666555443 2221 11111111
Q ss_pred ------HHhccC----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003557 219 ------TLAVTT----GLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAI 288 (811)
Q Consensus 219 ------~l~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 288 (811)
+++.-| ..+++..+++..|.++++.++|..+.+ +++|..+.-+...|.++...|+--...+.++-+-
T Consensus 267 FrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 267 FRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQ 343 (557)
T ss_pred EeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence 111111 135677888888999999999988776 4678888888888888888887554444443332
Q ss_pred ---hcC------CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCChhhHhHHHHHH
Q 003557 289 ---TIR------PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEV 355 (811)
Q Consensus 289 ---~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a 355 (811)
++- -+.......++.++.-..++++-+.+++..-...-++....+|+++.....|++.++++.|-..
T Consensus 344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhh
Confidence 221 1223345667777777888888888888888888888888889999998888888888777543
|
|
| >cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=167.96 Aligned_cols=177 Identities=17% Similarity=0.181 Sum_probs=142.3
Q ss_pred cCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecCChhh-----HHHHHHHHHHcCCCCCceEEcC
Q 003557 593 RSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG-----EMRLRAYAVAQGVQPDQIIFTD 665 (811)
Q Consensus 593 r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~-----~~~l~~~~~~~gi~~~rv~~~~ 665 (811)
+..++.+.+.++|+.++|+ .|+.+.+++++.++.++.|+.+|+++|.++.. ...++...++.|+ .++|.|.|
T Consensus 211 ~~~~~~~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~g 289 (398)
T cd03800 211 RARLLRDPDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGV-IDRVDFPG 289 (398)
T ss_pred HHhhccCCCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCC-CceEEEec
Confidence 4556777778888888876 48999999999999988999999999976432 2356777888898 58999999
Q ss_pred CCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCcccc--CCHHHHHHHH
Q 003557 666 VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERA 742 (811)
Q Consensus 666 ~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~--~~~~~y~~~~ 742 (811)
..+..+....+..+|++|.|+.++| |++++|||++|+|||+........ ++.. +-.. ++. .|++++++.+
T Consensus 290 ~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e-----~i~~-~~~g-~~~~~~~~~~l~~~i 362 (398)
T cd03800 290 RVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVGGPRD-----IVVD-GVTG-LLVDPRDPEALAAAL 362 (398)
T ss_pred cCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCCCHHH-----HccC-CCCe-EEeCCCCHHHHHHHH
Confidence 9999999999999999999987777 999999999999999765433222 2222 2223 343 4799999999
Q ss_pred HHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHH
Q 003557 743 VSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 779 (811)
Q Consensus 743 ~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 779 (811)
.++.+|++.+..++++.++.. ...|+.+.++++++
T Consensus 363 ~~l~~~~~~~~~~~~~a~~~~--~~~~s~~~~~~~~~ 397 (398)
T cd03800 363 RRLLTDPALRRRLSRAGLRRA--RARYTWERVAARLL 397 (398)
T ss_pred HHHHhCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHh
Confidence 999999999999999988876 23599999888765
|
The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light. |
| >PLN02501 digalactosyldiacylglycerol synthase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=165.65 Aligned_cols=258 Identities=5% Similarity=-0.017 Sum_probs=166.3
Q ss_pred HHHHHHHHHhCCCeEEEeCCCCCCCc-chhhh------hcCCCceEEecc----ccCCCCCCCcc------------cEE
Q 003557 490 SDMIAKLINEDKIQILINLNGYTKGA-RNEIF------AMQPAPIQVSYM----GFPGTTGASYI------------DYL 546 (811)
Q Consensus 490 ~~~~~~~i~~~~~dilv~~~~~~~~~-~~~~~------~~r~Apvq~~~~----g~~~t~g~~~~------------d~~ 546 (811)
...+.+.|.+.++||+ |.+.. -++.. +.|.-||..++. .|....+...+ ..+
T Consensus 423 ~gdI~~~L~~f~PDVV-----HLatP~~LGw~~~Glr~ArKl~PVVasyHTny~eYl~~y~~g~L~~~llk~l~~~v~r~ 497 (794)
T PLN02501 423 AGDTSQFIPSKDADIA-----ILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRA 497 (794)
T ss_pred hHHHHHHhhccCCCEE-----EECCchhhccHHHHHHHHHHcCCeEEEEeCCcHHHHhHhcchhHHHHHHHHHHHHHHHh
Confidence 5789999999999999 55322 22333 334448765532 22222222111 111
Q ss_pred EecCccCCcCCCCCCccceEEcCCccccCCCccccccCCCCCCC-CCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHH
Q 003557 547 VTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQ-PKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWC 623 (811)
Q Consensus 547 ~~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~-~~r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~ 623 (811)
-+|.++.|+.....+....+.-.+ +.+.. ...|... ..+..+|++.....++.++|+ .|+...++++|.
T Consensus 498 hcD~VIaPS~atq~L~~~vI~nVn------GVDte--~F~P~~r~~~~r~lgi~~~~kgiLfVGRLa~EKGld~LLeAla 569 (794)
T PLN02501 498 YCHKVLRLSAATQDLPKSVICNVH------GVNPK--FLKIGEKVAEERELGQQAFSKGAYFLGKMVWAKGYRELIDLLA 569 (794)
T ss_pred hCCEEEcCCHHHHHhcccceeecc------ccccc--ccCCcchhHHHHhcCCccccCceEEEEcccccCCHHHHHHHHH
Confidence 257788887654433222222111 21111 1112111 123456775422223344555 699999999999
Q ss_pred HHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCC
Q 003557 624 NILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGL 702 (811)
Q Consensus 624 ~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~ 702 (811)
.+.+..|+.+|+|+|+|+. ++.+++.+.++|+ +|.|+|..+... ..|+.+|||+.|+.++| |++++|||+||+
T Consensus 570 ~L~~~~pnvrLvIVGDGP~-reeLe~la~eLgL---~V~FLG~~dd~~--~lyasaDVFVlPS~sEgFGlVlLEAMA~Gl 643 (794)
T PLN02501 570 KHKNELDGFNLDVFGNGED-AHEVQRAAKRLDL---NLNFLKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGK 643 (794)
T ss_pred HHHhhCCCeEEEEEcCCcc-HHHHHHHHHHcCC---EEEecCCCCCHH--HHHHhCCEEEECCCcccchHHHHHHHHcCC
Confidence 9988899999999999987 8889999999998 389999655333 45788999999999999 999999999999
Q ss_pred CcccccCCccccchhHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 003557 703 PMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 782 (811)
Q Consensus 703 Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 782 (811)
|||+...+... ++.. |-.. ++..+++++++.+.++..|+..+..+++ + ..|+++..++++++.=
T Consensus 644 PVVATd~pG~e------~V~~-g~nG-ll~~D~EafAeAI~~LLsd~~~rl~~~a--~------~~~SWeAaadrLle~~ 707 (794)
T PLN02501 644 FVVCADHPSNE------FFRS-FPNC-LTYKTSEDFVAKVKEALANEPQPLTPEQ--R------YNLSWEAATQRFMEYS 707 (794)
T ss_pred CEEEecCCCCc------eEee-cCCe-EecCCHHHHHHHHHHHHhCchhhhHHHH--H------hhCCHHHHHHHHHHhh
Confidence 99965433211 1111 3333 5568999999999999998875544332 1 1488888888887654
|
|
| >cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=163.83 Aligned_cols=332 Identities=10% Similarity=0.086 Sum_probs=196.3
Q ss_pred eEeeecCCC---CCChhHhhHHHHhcccCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCC----------HHHH
Q 003557 427 RVGYVSSDF---GNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS----------SDMI 493 (811)
Q Consensus 427 rvg~~s~~~---~~h~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 493 (811)
||.+++.++ ..+++..++..+.+.+.+.+++|.+++........ .....+..++.++... ...+
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 77 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQK---ETEYNGVRLIHIPAPEIGGLGTIIYDILAI 77 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCc---ccccCCceEEEcCCCCccchhhhHHHHHHH
Confidence 467776654 23456678888888888888899888865433221 1111223333333211 1112
Q ss_pred HHHH-HhCCCeEEEeCCCCCCCcchhhhhcCCCceEEeccccCCCC-CCCc-----------ccEEEecCccCCcCCCCC
Q 003557 494 AKLI-NEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTT-GASY-----------IDYLVTDEFVSPLRYAHI 560 (811)
Q Consensus 494 ~~~i-~~~~~dilv~~~~~~~~~~~~~~~~r~Apvq~~~~g~~~t~-g~~~-----------~d~~~~d~~~~p~~~~~~ 560 (811)
...+ ...++|+++.....+ ..-..++..+..|+.++..|..-.. ..+. .-+..+|.+++++.....
T Consensus 78 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~ 156 (363)
T cd04955 78 LHALFVKRDIDHVHALGPAI-APFLPLLRLKGKKVVVNMDGLEWKRAKWGRPAKRYLKFGEKLAVKFADRLIADSPGIKE 156 (363)
T ss_pred HHHHhccCCeEEEEecCccH-HHHHHHHHhcCCCEEEEccCcceeecccccchhHHHHHHHHHHHhhccEEEeCCHHHHH
Confidence 2222 256788885443332 1112233334568887765542111 0000 011234555554443211
Q ss_pred CccceEEcCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeec
Q 003557 561 YSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLR 638 (811)
Q Consensus 561 ~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~ 638 (811)
+..+....+. .+.+++...... .+ ....+..++++++.+ ++.++|. .|+...+++++.++.. +.+|+++|
T Consensus 157 ~~~~~~~~~~-~~i~ngv~~~~~--~~-~~~~~~~~~~~~~~~-i~~~G~~~~~Kg~~~li~a~~~l~~---~~~l~ivG 228 (363)
T cd04955 157 YLKEKYGRDS-TYIPYGADHVVS--SE-EDEILKKYGLEPGRY-YLLVGRIVPENNIDDLIEAFSKSNS---GKKLVIVG 228 (363)
T ss_pred HHHHhcCCCC-eeeCCCcChhhc--ch-hhhhHHhcCCCCCcE-EEEEecccccCCHHHHHHHHHhhcc---CceEEEEc
Confidence 1111111111 111111111100 01 112344566665543 4455554 5999999999987643 68999999
Q ss_pred CChhhHHHHHHHHH-HcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCC-CC-hhHHHHHHHhCCCcccccCCccccc
Q 003557 639 FPAAGEMRLRAYAV-AQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLC-NA-HTTGTDILWAGLPMITLPLEKMATR 715 (811)
Q Consensus 639 ~~~~~~~~l~~~~~-~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~-~g-~~t~~eal~~g~Pvvt~~g~~~~~r 715 (811)
.++. ...+.+.+. ..++ .++|+|+|..+..+....+..+|+++-|+.. +| |++++|||++|+|||+........-
T Consensus 229 ~~~~-~~~~~~~~~~~~~~-~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~e~ 306 (363)
T cd04955 229 NADH-NTPYGKLLKEKAAA-DPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFNREV 306 (363)
T ss_pred CCCC-cchHHHHHHHHhCC-CCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCcccee
Confidence 8754 445555555 6677 5899999999999999999999999999866 77 9999999999999996543322222
Q ss_pred hhHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 003557 716 VAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 783 (811)
Q Consensus 716 ~~~~~l~~~g~~~~~v~~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 783 (811)
+. -.. ++....+.+.+.+.++.+|++.+.+++++.++.. ...|+++.++++++++|+
T Consensus 307 ~~--------~~g-~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~--~~~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 307 LG--------DKA-IYFKVGDDLASLLEELEADPEEVSAMAKAARERI--REKYTWEKIADQYEELYK 363 (363)
T ss_pred ec--------CCe-eEecCchHHHHHHHHHHhCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHhC
Confidence 21 122 3333344499999999999999999999988876 346999999999999884
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.66 E-value=7e-16 Score=168.72 Aligned_cols=166 Identities=17% Similarity=0.185 Sum_probs=125.8
Q ss_pred CcEEEEecCCC--CCCCHHHHHHHHHHHhhcCC-----eEEEeecCChh-----hHHHHHHHHHHcCCCCCceEEcCCCC
Q 003557 601 DKFIFACFNQL--YKMDPEIFNTWCNILRRVPN-----SALWLLRFPAA-----GEMRLRAYAVAQGVQPDQIIFTDVAM 668 (811)
Q Consensus 601 ~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~-----~~l~l~~~~~~-----~~~~l~~~~~~~gi~~~rv~~~~~~~ 668 (811)
+.++|++++|. .|++..++++|+++.++.|+ .+|+|+|++.. ..+.|++.++++|+ .++|.|.|..+
T Consensus 236 ~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l-~~~V~f~g~v~ 314 (419)
T cd03806 236 RENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGL-EDKVEFVVNAP 314 (419)
T ss_pred CCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCC-CCeEEEecCCC
Confidence 44667777755 59999999999999988765 89999997632 24678888999999 68999999999
Q ss_pred hHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccC-CccccchhHHHHH--hcCCCCccccCCHHHHHHHHHH
Q 003557 669 KQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPL-EKMATRVAGSLCL--ATGLGEEMIVNSMKEYEERAVS 744 (811)
Q Consensus 669 ~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g-~~~~~r~~~~~l~--~~g~~~~~v~~~~~~y~~~~~~ 744 (811)
.++....|+.+|++|.|+..++ |.+++|||++|+|||+... ..... ++. .-|-.+ +++.|++++++.+.+
T Consensus 315 ~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~-----iv~~~~~g~~G-~l~~d~~~la~ai~~ 388 (419)
T cd03806 315 FEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLD-----IVVPWDGGPTG-FLASTAEEYAEAIEK 388 (419)
T ss_pred HHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCchh-----eeeccCCCCce-EEeCCHHHHHHHHHH
Confidence 9999999999999999988788 9999999999999996542 21111 111 014455 667899999999999
Q ss_pred HhcCHH-HHHHHHHHHHhhcccCCCCChHHHHH
Q 003557 745 LALDRQ-KLQALTNKLKSVRLTCPLFDTARWVK 776 (811)
Q Consensus 745 l~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (811)
+.++++ .+..+++..+. . ...|+.+.|.+
T Consensus 389 ll~~~~~~~~~~~~~~~~-~--~~~fs~~~f~~ 418 (419)
T cd03806 389 ILSLSEEERLRIRRAARS-S--VKRFSDEEFER 418 (419)
T ss_pred HHhCCHHHHHHHHHHHHH-H--HHhhCHHHhcc
Confidence 998655 44445444333 3 23588887753
|
ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides. |
| >cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.6e-16 Score=167.54 Aligned_cols=324 Identities=11% Similarity=0.043 Sum_probs=202.6
Q ss_pred eEeeecCCCCC---ChhHhhHHHHhcccCCCCeEEEEEecCCCCChHHHHHHHhcc--C---ceEECCC--CCHHHHHHH
Q 003557 427 RVGYVSSDFGN---HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEA--E---HFVDVSA--MSSDMIAKL 496 (811)
Q Consensus 427 rvg~~s~~~~~---h~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~~~~~~~~--~---~~~~~~~--~~~~~~~~~ 496 (811)
||++++..+.. +++.+++..+.+.+.+...++.++.................. . ....... .........
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRLL 80 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHHH
Confidence 46777777765 678888999998888766665555544322211110000000 0 0000000 012345556
Q ss_pred HHhCCCeEEEeCCCCCCCcchhhhhcCCCceEEeccc-----cCCCCCC--------------CcccEEEecCccCCcCC
Q 003557 497 INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMG-----FPGTTGA--------------SYIDYLVTDEFVSPLRY 557 (811)
Q Consensus 497 i~~~~~dilv~~~~~~~~~~~~~~~~r~Apvq~~~~g-----~~~t~g~--------------~~~d~~~~d~~~~p~~~ 557 (811)
+...++||+ |++.....++.....|+.++... ++..... ...|.++ .+++.
T Consensus 81 ~~~~~~Dii-----~~~~~~~~~~~~~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i-----~~s~~ 150 (365)
T cd03809 81 LLLLGLDLL-----HSPHNTAPLLRLRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAII-----TVSEA 150 (365)
T ss_pred hhhcCCCee-----eecccccCcccCCCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEE-----EccHH
Confidence 666899999 66555544433344676665433 2211111 1223333 33322
Q ss_pred -----CCCC---ccceEEcCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHh
Q 003557 558 -----AHIY---SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILR 627 (811)
Q Consensus 558 -----~~~~---~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~ 627 (811)
...+ .+++..+|++.-..... +.....+...+.+.+.++++.+++. .|+.+.+++++..+.+
T Consensus 151 ~~~~~~~~~~~~~~~~~vi~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~ 222 (365)
T cd03809 151 TKRDLLRYLGVPPDKIVVIPLGVDPRFRP--------PPAEAEVLRALYLLPRPYFLYVGTIEPRKNLERLLEAFARLPA 222 (365)
T ss_pred HHHHHHHHhCcCHHHEEeeccccCccccC--------CCchHHHHHHhcCCCCCeEEEeCCCccccCHHHHHHHHHHHHH
Confidence 1111 34555555433211100 0000001223344556677777765 5999999999999999
Q ss_pred hcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCccc
Q 003557 628 RVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMIT 706 (811)
Q Consensus 628 ~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt 706 (811)
..|+.+|+++|.++..........++.+. .++|.|.|..+..+....+..+|+++.|+.++| |.+++|||++|+|||+
T Consensus 223 ~~~~~~l~i~G~~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~ 301 (365)
T cd03809 223 KGPDPKLVIVGKRGWLNEELLARLRELGL-GDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIA 301 (365)
T ss_pred hcCCCCEEEecCCccccHHHHHHHHHcCC-CCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEe
Confidence 98889999999765434445555567787 689999999999999999999999999987777 9999999999999998
Q ss_pred ccCCccccchhHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHH
Q 003557 707 LPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 779 (811)
Q Consensus 707 ~~g~~~~~r~~~~~l~~~g~~~~~v~~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 779 (811)
...+.+...++. .|. .+...|.+++++.+.++.+|++.+..+++..++... .|+++.+++++.
T Consensus 302 ~~~~~~~e~~~~-----~~~--~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~---~~sw~~~~~~~~ 364 (365)
T cd03809 302 SNISSLPEVAGD-----AAL--YFDPLDPEALAAAIERLLEDPALREELRERGLARAK---RFSWEKTARRTL 364 (365)
T ss_pred cCCCCccceecC-----cee--eeCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---hCCHHHHHHHHh
Confidence 665555444331 121 133568999999999999999999999998886543 499999988765
|
mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide. |
| >TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=174.15 Aligned_cols=180 Identities=13% Similarity=0.085 Sum_probs=142.1
Q ss_pred CCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhh--cCCeEEEeecCChhh----------HHHHHHHHHHcCCCCCce
Q 003557 596 YGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRR--VPNSALWLLRFPAAG----------EMRLRAYAVAQGVQPDQI 661 (811)
Q Consensus 596 ~gl~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~--~p~~~l~l~~~~~~~----------~~~l~~~~~~~gi~~~rv 661 (811)
++.+.+.+++++++|+. |+...+++++.++.+. .|+.+ +++|.++.. ...+++.+.+.|+ .++|
T Consensus 473 ~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL-~g~V 550 (1050)
T TIGR02468 473 FFTNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDL-YGQV 550 (1050)
T ss_pred hcccCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCC-CCeE
Confidence 34466677888888874 9999999999988653 45655 455655321 2467888899999 6999
Q ss_pred EEcCCCChHHHHHhcCCC----cEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhH--HHHHhcCCCCcccc--
Q 003557 662 IFTDVAMKQEHIRRSSLA----DLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAG--SLCLATGLGEEMIV-- 732 (811)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~----Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~--~~l~~~g~~~~~v~-- 732 (811)
.|.|..+..+...+|+.+ |||+.|+.++| |+|++|||+||+||| ++++|+ .++.. |.+. +++
T Consensus 551 ~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVV-------ASdvGG~~EII~~-g~nG-lLVdP 621 (1050)
T TIGR02468 551 AYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMV-------ATKNGGPVDIHRV-LDNG-LLVDP 621 (1050)
T ss_pred EecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEE-------EeCCCCcHHHhcc-CCcE-EEECC
Confidence 999998888888888777 69999999999 999999999999999 555551 11111 3344 333
Q ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHH
Q 003557 733 NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLH 789 (811)
Q Consensus 733 ~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~ 789 (811)
.|++++++++.++.+|++++++|+++.+++.. .|+++.+++++.+.|.....+.
T Consensus 622 ~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~---~FSWe~ia~~yl~~i~~~~~~~ 675 (1050)
T TIGR02468 622 HDQQAIADALLKLVADKQLWAECRQNGLKNIH---LFSWPEHCKTYLSRIASCRPRH 675 (1050)
T ss_pred CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHhccC
Confidence 48999999999999999999999999988763 4999999999999999887664
|
Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein. |
| >cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.3e-15 Score=156.99 Aligned_cols=310 Identities=13% Similarity=0.044 Sum_probs=185.4
Q ss_pred ceEeeecCCC------CCChhHhhHHHHhcccCCCCeEEEEEecCCCCChHHHHHHHhccC--ceEECCCC------CHH
Q 003557 426 LRVGYVSSDF------GNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAE--HFVDVSAM------SSD 491 (811)
Q Consensus 426 lrvg~~s~~~------~~h~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~~~~~~~~~--~~~~~~~~------~~~ 491 (811)
+||.+++..+ ..+++...+..+.+.+.+.+.||++++....... ........ .+...... ...
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTA---APLVPVVPEPLRLDAPGRDRAEAEALA 77 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcc---cceeeccCCCcccccchhhHhhHHHHH
Confidence 4678888776 4566778888898888888899999886543211 11111111 00000000 124
Q ss_pred HHHHHHHhCCCeEEEeCCCCCCCcchhhh--hcCCCceEEeccccCCCCCCC-cccEEEecCccCCcCCCCCCc---cce
Q 003557 492 MIAKLINEDKIQILINLNGYTKGARNEIF--AMQPAPIQVSYMGFPGTTGAS-YIDYLVTDEFVSPLRYAHIYS---EKL 565 (811)
Q Consensus 492 ~~~~~i~~~~~dilv~~~~~~~~~~~~~~--~~r~Apvq~~~~g~~~t~g~~-~~d~~~~d~~~~p~~~~~~~~---e~~ 565 (811)
.+.+.++..++||+ |+++.....+ ..+..|+..+..+........ .......+.++..+....... .++
T Consensus 78 ~~~~~~~~~~~Div-----h~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 152 (335)
T cd03802 78 LAERALAAGDFDIV-----HNHSLHLPLPFARPLPVPVVTTLHGPPDPELLKLYYAARPDVPFVSISDAQRRPWPPLPWV 152 (335)
T ss_pred HHHHHHhcCCCCEE-----EecCcccchhhhcccCCCEEEEecCCCCcccchHHHhhCcCCeEEEecHHHHhhccccccc
Confidence 57788888999999 7766554432 223357777766654322111 001111122222222111111 334
Q ss_pred EEcCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecC--CCCCCCHHHHHHHHHHHhhcCCeEEEeecCChhh
Q 003557 566 VHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFN--QLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG 643 (811)
Q Consensus 566 ~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~--~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~ 643 (811)
..+|++.-... ..+ . +.+..+++.++ ...|+.+.++++..+ ++.+|+++|.++.
T Consensus 153 ~vi~ngvd~~~--------~~~--~--------~~~~~~i~~~Gr~~~~Kg~~~li~~~~~-----~~~~l~i~G~~~~- 208 (335)
T cd03802 153 ATVHNGIDLDD--------YPF--R--------GPKGDYLLFLGRISPEKGPHLAIRAARR-----AGIPLKLAGPVSD- 208 (335)
T ss_pred EEecCCcChhh--------CCC--C--------CCCCCEEEEEEeeccccCHHHHHHHHHh-----cCCeEEEEeCCCC-
Confidence 44444321110 111 0 11122333344 457999998887543 4689999998865
Q ss_pred HHHHHHHHHHcC-CCCCceEEcCCCChHHHHHhcCCCcEEecCCCC-CC-hhHHHHHHHhCCCcccccCCccccchhHHH
Q 003557 644 EMRLRAYAVAQG-VQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLC-NA-HTTGTDILWAGLPMITLPLEKMATRVAGSL 720 (811)
Q Consensus 644 ~~~l~~~~~~~g-i~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~-~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~ 720 (811)
...+.....+.. + .++|.|.|..+..+....++.+|+++-|+.+ +| |++++|||++|+|||+........-+..
T Consensus 209 ~~~~~~~~~~~~~~-~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~-- 285 (335)
T cd03802 209 PDYFYREIAPELLD-GPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGAVPEVVED-- 285 (335)
T ss_pred HHHHHHHHHHhccc-CCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCCchhheeC--
Confidence 555555555554 4 5899999999988888899999999999753 55 9999999999999996654444433331
Q ss_pred HHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 003557 721 CLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 783 (811)
Q Consensus 721 l~~~g~~~~~v~~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 783 (811)
|..+ ++.++++++++.+.++..+.. ...|+... ..|+.+.++++++++|+
T Consensus 286 ----~~~g-~l~~~~~~l~~~l~~l~~~~~--~~~~~~~~------~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 286 ----GVTG-FLVDSVEELAAAVARADRLDR--AACRRRAE------RRFSAARMVDDYLALYR 335 (335)
T ss_pred ----CCcE-EEeCCHHHHHHHHHHHhccHH--HHHHHHHH------HhCCHHHHHHHHHHHhC
Confidence 4445 666679999988888765432 22233222 34999999999999984
|
aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue. |
| >cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.5e-15 Score=160.58 Aligned_cols=316 Identities=13% Similarity=0.108 Sum_probs=195.6
Q ss_pred eEeeecCCCCCChhHhhHHHHhcccCCCCeEEEEEecCCCCChHHHHH--H--HhccCceEEC--CCCCHHHHHHHHHhC
Q 003557 427 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQR--T--QSEAEHFVDV--SAMSSDMIAKLINED 500 (811)
Q Consensus 427 rvg~~s~~~~~h~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~~~--~--~~~~~~~~~~--~~~~~~~~~~~i~~~ 500 (811)
||.+++..+..+++...+..+.+.+.+.+++|.++...+......... . .......... .......+.+.++..
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 578889998877788888888888877889999988765432210000 0 0000000000 011246789999999
Q ss_pred CCeEEEeCCCCCCCcchhhhhcC-CCceEEeccccCCCCCCC--c------ccEEEecCccCCcCCCC-----CC---cc
Q 003557 501 KIQILINLNGYTKGARNEIFAMQ-PAPIQVSYMGFPGTTGAS--Y------IDYLVTDEFVSPLRYAH-----IY---SE 563 (811)
Q Consensus 501 ~~dilv~~~~~~~~~~~~~~~~r-~Apvq~~~~g~~~t~g~~--~------~d~~~~d~~~~p~~~~~-----~~---~e 563 (811)
++|+++.... ....-...+..+ -.|+.+...+........ . .-+--+|.++++.+... .+ .+
T Consensus 81 ~~dii~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~ 159 (353)
T cd03811 81 KPDVVISHLT-TTPNVLALLAARLGTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPD 159 (353)
T ss_pred CCCEEEEcCc-cchhHHHHHHhhcCCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHHhhcCCcc
Confidence 9999965554 111111222221 246655443332221110 0 01112233333433221 11 24
Q ss_pred ceEEcCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecCCh
Q 003557 564 KLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPA 641 (811)
Q Consensus 564 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~ 641 (811)
++..+|+....... .+.... +..++.+.+.++|+++++. .|+.+.++++|..+..+.|+.+|+++|.++
T Consensus 160 ~~~vi~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~ 230 (353)
T cd03811 160 KIEVIYNPIDIEEI--------RALAEE-PLELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGP 230 (353)
T ss_pred ccEEecCCcChhhc--------Ccccch-hhhcCCCCCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCc
Confidence 45555543321111 010000 1034566777888888876 499999999999998888999999999877
Q ss_pred hhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHH
Q 003557 642 AGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSL 720 (811)
Q Consensus 642 ~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~ 720 (811)
. ...+.+.+...|+ .++|.|.|..+ +....++.+|+++.|+.++| |++++|||++|+|||+.........+.
T Consensus 231 ~-~~~~~~~~~~~~~-~~~v~~~g~~~--~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~~~~e~i~--- 303 (353)
T cd03811 231 L-REELEALAKELGL-ADRVHFLGFQS--NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCPGPREILE--- 303 (353)
T ss_pred c-HHHHHHHHHhcCC-CccEEEecccC--CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCCChHHHhc---
Confidence 6 7778888899998 68999999643 45567899999999998888 999999999999999765443332222
Q ss_pred HHhcCCCCcccc--CCHHHH---HHHHHHHhcCHHHHHHHHHHHHhhc
Q 003557 721 CLATGLGEEMIV--NSMKEY---EERAVSLALDRQKLQALTNKLKSVR 763 (811)
Q Consensus 721 l~~~g~~~~~v~--~~~~~y---~~~~~~l~~d~~~~~~~~~~~~~~~ 763 (811)
. |-.. ++. ++++++ ++.+..+..|++.+.+++...++..
T Consensus 304 --~-~~~g-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 347 (353)
T cd03811 304 --D-GENG-LLVPVGDEAALAAAALALLDLLLDPELRERLAAAARERV 347 (353)
T ss_pred --C-CCce-EEECCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 1 3333 333 466677 6778888889999888888555543
|
WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core. |
| >PRK14099 glycogen synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.8e-15 Score=163.43 Aligned_cols=184 Identities=18% Similarity=0.121 Sum_probs=129.6
Q ss_pred CcCCCCCCC--CcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecCChh-hHHHHHHHHHHcCCCCCce-EEcC
Q 003557 592 KRSDYGLPE--DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-GEMRLRAYAVAQGVQPDQI-IFTD 665 (811)
Q Consensus 592 ~r~~~gl~~--~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~-~~~~l~~~~~~~gi~~~rv-~~~~ 665 (811)
.|+++||+. +.++||+++|+ .|+.+.+++++.++++. +.+|+|+|.|+. .++.+++.+++++ +++ .|+|
T Consensus 283 l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~~--~~~lvivG~G~~~~~~~l~~l~~~~~---~~v~~~~G 357 (485)
T PRK14099 283 LQARFGLDPDPDALLLGVISRLSWQKGLDLLLEALPTLLGE--GAQLALLGSGDAELEARFRAAAQAYP---GQIGVVIG 357 (485)
T ss_pred HHHHcCCCcccCCcEEEEEecCCccccHHHHHHHHHHHHhc--CcEEEEEecCCHHHHHHHHHHHHHCC---CCEEEEeC
Confidence 567899984 56889999887 49999999999988753 688999998753 2566777776654 455 7888
Q ss_pred CCChHHHHHhc-CCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhH--HHHHhcC-CCCccc--cCCHHHH
Q 003557 666 VAMKQEHIRRS-SLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAG--SLCLATG-LGEEMI--VNSMKEY 738 (811)
Q Consensus 666 ~~~~~~~~~~~-~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~--~~l~~~g-~~~~~v--~~~~~~y 738 (811)
. .++...++ ..+|+||-|+.++| |++.+|||++|+|+|+........-|.. ......| -++ ++ ..|++++
T Consensus 358 ~--~~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G-~l~~~~d~~~L 434 (485)
T PRK14099 358 Y--DEALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATG-VQFSPVTADAL 434 (485)
T ss_pred C--CHHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCce-EEeCCCCHHHH
Confidence 6 34544545 57999999999999 9999999999966553221111111100 0000000 122 33 2478888
Q ss_pred HHHHHH---HhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHH
Q 003557 739 EERAVS---LALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 788 (811)
Q Consensus 739 ~~~~~~---l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 788 (811)
.+.+.+ +.+|++.+.+|+++.+. ..|++++++++++++|+++++.
T Consensus 435 a~ai~~a~~l~~d~~~~~~l~~~~~~-----~~fSw~~~a~~y~~lY~~l~~~ 482 (485)
T PRK14099 435 AAALRKTAALFADPVAWRRLQRNGMT-----TDVSWRNPAQHYAALYRSLVAE 482 (485)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhh-----hcCChHHHHHHHHHHHHHHHhh
Confidence 887765 77899999998887643 3499999999999999998753
|
|
| >TIGR02470 sucr_synth sucrose synthase | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.5e-15 Score=166.01 Aligned_cols=178 Identities=16% Similarity=0.115 Sum_probs=134.6
Q ss_pred CCCCC--CCCcEEEEecCCCC--CCCHHHHHHHHHHHhhcCCeEEEeecCChh-----------hHHHHHHHHHHcCCCC
Q 003557 594 SDYGL--PEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPNSALWLLRFPAA-----------GEMRLRAYAVAQGVQP 658 (811)
Q Consensus 594 ~~~gl--~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~l~~~~~~-----------~~~~l~~~~~~~gi~~ 658 (811)
+.+|+ +.+.+++++++|+. |+...+++++.++.+..+++.|+|+|++.. ..+++.+.+.+.|+ .
T Consensus 540 ~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL-~ 618 (784)
T TIGR02470 540 EHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQL-H 618 (784)
T ss_pred HHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCC-C
Confidence 55676 55678888999884 999999999988755556789999987532 12467788899999 6
Q ss_pred CceEEcCCC-ChH---HHHHhcC-CCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhc--CCCCcc
Q 003557 659 DQIIFTDVA-MKQ---EHIRRSS-LADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLAT--GLGEEM 730 (811)
Q Consensus 659 ~rv~~~~~~-~~~---~~~~~~~-~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~--g~~~~~ 730 (811)
++|.|+|.. +.. +.+..+. .+|||+-|+.+++ |.|++|||+||+||| ++++|+ +-..+ |.++ +
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVV-------AT~~GG-~~EiV~dg~tG-f 689 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTF-------ATRFGG-PLEIIQDGVSG-F 689 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEE-------EcCCCC-HHHHhcCCCcE-E
Confidence 999999954 433 3444333 4689999999999 999999999999999 566661 11111 3344 3
Q ss_pred cc--CCHHHHHHHHHHHh----cCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 003557 731 IV--NSMKEYEERAVSLA----LDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 783 (811)
Q Consensus 731 v~--~~~~~y~~~~~~l~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 783 (811)
+. .|++++++.+.++. +|++.+.+|+++.++++ ...|+++.+++++.+...
T Consensus 690 LVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV--~~~FSW~~~A~~ll~l~~ 746 (784)
T TIGR02470 690 HIDPYHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRI--YEKYTWKIYSERLLTLAG 746 (784)
T ss_pred EeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHh
Confidence 32 47899988888764 79999999999988876 345999999999998764
|
This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria. |
| >cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.8e-15 Score=161.76 Aligned_cols=155 Identities=14% Similarity=0.099 Sum_probs=122.1
Q ss_pred CCcEEEEecCCC--CCCCHHHHHHHHHHHhh------cCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHH
Q 003557 600 EDKFIFACFNQL--YKMDPEIFNTWCNILRR------VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQE 671 (811)
Q Consensus 600 ~~~~~~~~~~~~--~K~~~~~~~~~~~il~~------~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~ 671 (811)
++.+++++.+|+ .|+.+.+++++..+.+. .|+.+|+|+|+|+. ++.+++.+++.|+ .+.+.|.|+.+.++
T Consensus 230 ~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~-~~~l~~~~~~~~l-~~~~~~~g~~~~~~ 307 (415)
T cd03816 230 ERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPL-KEKYLERIKELKL-KKVTIRTPWLSAED 307 (415)
T ss_pred CCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCcc-HHHHHHHHHHcCC-CcEEEEcCcCCHHH
Confidence 444667677765 59999999999988753 47899999999986 8899999999999 45566667888999
Q ss_pred HHHhcCCCcEEecCCC---CCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 003557 672 HIRRSSLADLFLDTPL---CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL 747 (811)
Q Consensus 672 ~~~~~~~~Dv~ld~~~---~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~~~~~y~~~~~~l~~ 747 (811)
...+|..+||++.+++ ..| |++++|||+||+|||+....... .++.. |..+ ++..|++++++++.+|.+
T Consensus 308 ~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~-----eiv~~-~~~G-~lv~d~~~la~~i~~ll~ 380 (415)
T cd03816 308 YPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCID-----ELVKH-GENG-LVFGDSEELAEQLIDLLS 380 (415)
T ss_pred HHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHH-----HHhcC-CCCE-EEECCHHHHHHHHHHHHh
Confidence 9999999999985432 234 99999999999999965432222 23333 5556 556799999999999999
Q ss_pred C---HHHHHHHHHHHHhhc
Q 003557 748 D---RQKLQALTNKLKSVR 763 (811)
Q Consensus 748 d---~~~~~~~~~~~~~~~ 763 (811)
| ++.+.+|+++.++..
T Consensus 381 ~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 381 NFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred cCCCHHHHHHHHHHHHHhh
Confidence 9 999999999887754
|
The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik. |
| >TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=158.63 Aligned_cols=166 Identities=9% Similarity=0.070 Sum_probs=125.1
Q ss_pred CCcEEEEecCCC--CCCCHHHH----HHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHH
Q 003557 600 EDKFIFACFNQL--YKMDPEIF----NTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHI 673 (811)
Q Consensus 600 ~~~~~~~~~~~~--~K~~~~~~----~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 673 (811)
.+.++++.++++ .|+.+.++ ++|..+.++.|+.+|+|+|.|+. . . +++.+. .++|+|+|..+ +..
T Consensus 222 ~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~-~-~----~~~l~~-~~~V~~~G~v~--~~~ 292 (397)
T TIGR03087 222 PGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPS-P-A----VRALAA-LPGVTVTGSVA--DVR 292 (397)
T ss_pred CCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCCh-H-H----HHHhcc-CCCeEEeeecC--CHH
Confidence 344566666654 58887776 67888888899999999998864 2 2 334455 47899999776 456
Q ss_pred HhcCCCcEEecCCCC-CC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHH
Q 003557 674 RRSSLADLFLDTPLC-NA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQK 751 (811)
Q Consensus 674 ~~~~~~Dv~ld~~~~-~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~~~~~y~~~~~~l~~d~~~ 751 (811)
.+|+.+||++-|+.. +| +++++|||+||+|||+... +...+...+-.+.+++.|++++++.+.+|.+|++.
T Consensus 293 ~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~-------~~~~i~~~~~~g~lv~~~~~~la~ai~~ll~~~~~ 365 (397)
T TIGR03087 293 PYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPE-------AAEGIDALPGAELLVAADPADFAAAILALLANPAE 365 (397)
T ss_pred HHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecCc-------ccccccccCCcceEeCCCHHHHHHHHHHHHcCHHH
Confidence 678999999999853 56 8899999999999997542 11111111111225678999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 003557 752 LQALTNKLKSVRLTCPLFDTARWVKNLERSYF 783 (811)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 783 (811)
+++|+++.|+.. ...|+++..+++++++|.
T Consensus 366 ~~~~~~~ar~~v--~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 366 REELGQAARRRV--LQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHHHHHH--HHhCCHHHHHHHHHHHhc
Confidence 999999998876 335999999999999885
|
Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate. |
| >PRK00654 glgA glycogen synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.8e-15 Score=162.76 Aligned_cols=171 Identities=19% Similarity=0.158 Sum_probs=131.1
Q ss_pred CcCCCCCCC-CcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecCChh-hHHHHHHHHHHcCCCCCceEE-cCC
Q 003557 592 KRSDYGLPE-DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-GEMRLRAYAVAQGVQPDQIIF-TDV 666 (811)
Q Consensus 592 ~r~~~gl~~-~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~-~~~~l~~~~~~~gi~~~rv~~-~~~ 666 (811)
+|.++|+++ +.++++.++|+ .|+.+.+++++.++++. +.+|+|+|.|+. .++.+++..+++| ++|.| .|.
T Consensus 271 l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~--~~~lvivG~g~~~~~~~l~~l~~~~~---~~v~~~~g~ 345 (466)
T PRK00654 271 LQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQ--GGQLVLLGTGDPELEEAFRALAARYP---GKVGVQIGY 345 (466)
T ss_pred HHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHhc--CCEEEEEecCcHHHHHHHHHHHHHCC---CcEEEEEeC
Confidence 577899985 67899999887 49999999999998764 689999998753 2567888888776 35654 554
Q ss_pred CChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCC-------------ccc-
Q 003557 667 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGE-------------EMI- 731 (811)
Q Consensus 667 ~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~-------------~~v- 731 (811)
+.+.....|+.+|+||.|+.++| |++.+|||++|+|+|+ +++| |++| .++
T Consensus 346 -~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~-------~~~g-------G~~e~v~~~~~~~~~~~G~lv 410 (466)
T PRK00654 346 -DEALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIV-------RRTG-------GLADTVIDYNPEDGEATGFVF 410 (466)
T ss_pred -CHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEE-------eCCC-------CccceeecCCCCCCCCceEEe
Confidence 33334467899999999999999 9999999999999994 4455 4433 022
Q ss_pred -cCCHHHHHHHHHHHhc---CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 003557 732 -VNSMKEYEERAVSLAL---DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 787 (811)
Q Consensus 732 -~~~~~~y~~~~~~l~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 787 (811)
..|++++++.+.++.. |++.+.+++++..+ ..|++++++++++++|++++.
T Consensus 411 ~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~-----~~fsw~~~a~~~~~lY~~~~~ 465 (466)
T PRK00654 411 DDFNAEDLLRALRRALELYRQPPLWRALQRQAMA-----QDFSWDKSAEEYLELYRRLLG 465 (466)
T ss_pred CCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc-----cCCChHHHHHHHHHHHHHHhh
Confidence 2478888888877665 77777777765533 359999999999999998864
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.2e-12 Score=126.37 Aligned_cols=355 Identities=15% Similarity=0.176 Sum_probs=262.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 003557 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 80 (811)
Q Consensus 1 l~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 80 (811)
|++++...|..++++++..-|.--..|+.....--..|+..-|.+.|++-++..|+. .+|......-.+.++.+.|..+
T Consensus 118 mknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e-qaW~sfI~fElRykeieraR~I 196 (677)
T KOG1915|consen 118 MKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE-QAWLSFIKFELRYKEIERARSI 196 (677)
T ss_pred HhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHH
Confidence 356677888888888888888877888888888888888888888888888888873 6777777777777778888888
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----hhHHHhHHHHHHHcCCHHHHHHH---------
Q 003557 81 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIAFGNLASTYYERGQADMAILY--------- 147 (811)
Q Consensus 81 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~--------- 147 (811)
|++-+-.+|+ ...|...+..-.+.|+..-|..+|+++++.-.+ ...+...+..-..+..++.|.-+
T Consensus 197 YerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~p 275 (677)
T KOG1915|consen 197 YERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIP 275 (677)
T ss_pred HHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8887777765 456666677777777777777777777665332 12222223222233333333322
Q ss_pred -----------------------------------HHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003557 148 -----------------------------------YKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 192 (811)
Q Consensus 148 -----------------------------------~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 192 (811)
|++.+..+|.+.++|+....+....|+.+.-.+.|++++...|..
T Consensus 276 k~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~ 355 (677)
T KOG1915|consen 276 KGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPA 355 (677)
T ss_pred cccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCch
Confidence 344455588888899999999999999999999999999987764
Q ss_pred hH---------HHHHHHH-HHHHcCChHHHHHHHHHHHhccCCC----chHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003557 193 PQ---------ALTNLGN-IYMEWNMLPAAASYYKATLAVTTGL----SAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 258 (811)
Q Consensus 193 ~~---------~~~~la~-~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 258 (811)
.+ .|.+.+. .-....+.+.+.+.|+.++++-|.. +..|...|....++.+...|.+.+-.++-..|
T Consensus 356 ~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cP 435 (677)
T KOG1915|consen 356 SEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCP 435 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCC
Confidence 32 2222221 1235788999999999999998875 45677788888899999999999999999998
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-ChHHHHHHHH
Q 003557 259 LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD-FPEATCNLLH 337 (811)
Q Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 337 (811)
.+ ........+-.++++++...++|++-++..|.+..+|...|.+-..+|+.+.|..+|+-|++...- -++.+..
T Consensus 436 K~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk--- 511 (677)
T KOG1915|consen 436 KD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK--- 511 (677)
T ss_pred ch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH---
Confidence 75 445556677788999999999999999999999999999999999999999999999999876432 2232211
Q ss_pred HhhhcCChhhHhHHHHHHHHHHHHHhc
Q 003557 338 TLQCVCSWEDRDRMFSEVEGIIRRQVN 364 (811)
Q Consensus 338 ~~~~~~~~~~a~~~~~~a~~l~~~~~~ 364 (811)
.--+++-....++.+.+++++.+.
T Consensus 512 ---aYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 512 ---AYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred ---HhhhhhhhcchHHHHHHHHHHHHH
Confidence 112344455556666666666553
|
|
| >cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.9e-15 Score=158.97 Aligned_cols=171 Identities=17% Similarity=0.203 Sum_probs=135.9
Q ss_pred cCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChH
Q 003557 593 RSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQ 670 (811)
Q Consensus 593 r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~ 670 (811)
+..++ +.+.++++.+++. .|..+.+++++.++.++ |+.+|+++|.++. ...++ +. .++|.|.|..+..
T Consensus 189 ~~~~~-~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~-~~~~l~i~G~~~~-~~~~~------~~-~~~v~~~g~~~~~ 258 (364)
T cd03814 189 RARLG-PPDRPVLLYVGRLAPEKNLEALLDADLPLRRR-PPVRLVIVGDGPA-RARLE------AR-YPNVHFLGFLDGE 258 (364)
T ss_pred HHHhC-CCCCeEEEEEeccccccCHHHHHHHHHHhhhc-CCceEEEEeCCch-HHHHh------cc-CCcEEEEeccCHH
Confidence 44444 4455677777755 59999999999999888 9999999998765 44443 44 5789999998888
Q ss_pred HHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccc--cCCHHHHHHHHHHHhc
Q 003557 671 EHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI--VNSMKEYEERAVSLAL 747 (811)
Q Consensus 671 ~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v--~~~~~~y~~~~~~l~~ 747 (811)
+....+..+|++|.|+..+| |++++|||++|+|||+.+.......+. . +-.. ++ ..+.+++++.+.++..
T Consensus 259 ~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i~-----~-~~~g-~~~~~~~~~~l~~~i~~l~~ 331 (364)
T cd03814 259 ELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGGPADIVT-----D-GENG-LLVEPGDAEAFAAALAALLA 331 (364)
T ss_pred HHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCCchhhhc-----C-Ccce-EEcCCCCHHHHHHHHHHHHc
Confidence 98899999999999987777 999999999999999887665544333 1 2223 33 3477889999999999
Q ss_pred CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 003557 748 DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 783 (811)
Q Consensus 748 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 783 (811)
|++.+.++.+..++.. ..|+++.+++.+++.|+
T Consensus 332 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 332 DPELRRRMAARARAEA---ERRSWEAFLDNLLEAYR 364 (364)
T ss_pred CHHHHHHHHHHHHHHH---hhcCHHHHHHHHHHhhC
Confidence 9999999999988875 34999999999998873
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=157.67 Aligned_cols=334 Identities=16% Similarity=0.155 Sum_probs=206.0
Q ss_pred eeecCCCCC---ChhHhhHHHHhcccCCCCeEEEEEecCCCCChHHHHHHHh--------c--cCceEECCCC-----CH
Q 003557 429 GYVSSDFGN---HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQS--------E--AEHFVDVSAM-----SS 490 (811)
Q Consensus 429 g~~s~~~~~---h~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~~~~~~--------~--~~~~~~~~~~-----~~ 490 (811)
.+++..+.. ++....+..++..+.+.+++|++++........... ... . ...+...... ..
T Consensus 2 Lii~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (377)
T cd03798 2 LVISSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDL-LKGRLVGVERLPVLLPVVPLLKGPLLYLLAA 80 (377)
T ss_pred eEeccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhh-cccccccccccccCcchhhccccchhHHHHH
Confidence 455665543 667778888888888788999998876543221110 000 0 0000000000 13
Q ss_pred HHHHHHHH--hCCCeEEEeCCCCCCCcchhhhhc-CCCceEEeccccCCCCC-------------CCcccEEEecCccCC
Q 003557 491 DMIAKLIN--EDKIQILINLNGYTKGARNEIFAM-QPAPIQVSYMGFPGTTG-------------ASYIDYLVTDEFVSP 554 (811)
Q Consensus 491 ~~~~~~i~--~~~~dilv~~~~~~~~~~~~~~~~-r~Apvq~~~~g~~~t~g-------------~~~~d~~~~d~~~~p 554 (811)
..+.+.++ ..++||++-......+.....+.. ...|+.+...+...... +...|.+++..-...
T Consensus 81 ~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~ 160 (377)
T cd03798 81 RALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSEALA 160 (377)
T ss_pred HHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCHHHH
Confidence 56788888 999999965532222222122221 22466665544322111 122344443211111
Q ss_pred cCCCC--CCccceEEcCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcC
Q 003557 555 LRYAH--IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVP 630 (811)
Q Consensus 555 ~~~~~--~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p 630 (811)
..... ....++..+|++.-.... .+........++...+.++++.+++. .|+...+++++..+.+..|
T Consensus 161 ~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~ 232 (377)
T cd03798 161 DELKALGIDPEKVTVIPNGVDTERF--------SPADRAEARKLGLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKRP 232 (377)
T ss_pred HHHHHhcCCCCceEEcCCCcCcccC--------CCcchHHHHhccCCCCceEEEEeccCccccCHHHHHHHHHHHHhcCC
Confidence 11111 133455555543221110 01001000223455567788888765 5899999999999988889
Q ss_pred CeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccC
Q 003557 631 NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPL 709 (811)
Q Consensus 631 ~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g 709 (811)
+.+|.+.|.++. ...+.+.++..++ .++|.+.|..+..+....+..+|+++.|+.++| |++++|||++|+|||+...
T Consensus 233 ~~~l~i~g~~~~-~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~ 310 (377)
T cd03798 233 DVHLVIVGDGPL-REALEALAAELGL-EDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDV 310 (377)
T ss_pred CeEEEEEcCCcc-hHHHHHHHHhcCC-cceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecC
Confidence 999999998765 6778888888898 589999999999999999999999999987766 9999999999999997654
Q ss_pred CccccchhHHHHHhcCCCCccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 003557 710 EKMATRVAGSLCLATGLGEEMI--VNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 784 (811)
Q Consensus 710 ~~~~~r~~~~~l~~~g~~~~~v--~~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 784 (811)
......+ .. +... ++ ..|++++++.+.++.+|++. .+....+... ...|+.+.+++++.++|++
T Consensus 311 ~~~~~~~-----~~-~~~g-~~~~~~~~~~l~~~i~~~~~~~~~--~~~~~~~~~~--~~~~s~~~~~~~~~~~~~~ 376 (377)
T cd03798 311 GGIPEII-----TD-GENG-LLVPPGDPEALAEAILRLLADPWL--RLGRAARRRV--AERFSWENVAERLLELYRE 376 (377)
T ss_pred CChHHHh-----cC-Ccce-eEECCCCHHHHHHHHHHHhcCcHH--HHhHHHHHHH--HHHhhHHHHHHHHHHHHhh
Confidence 3333222 12 2222 33 35899999999999999886 4444444444 3358999999999998875
|
wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. |
| >cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-14 Score=155.95 Aligned_cols=322 Identities=13% Similarity=0.113 Sum_probs=193.9
Q ss_pred EeeecCCCCC--ChhHhhHHHHhcccCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCC--------CCHHHHHH-H
Q 003557 428 VGYVSSDFGN--HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA--------MSSDMIAK-L 496 (811)
Q Consensus 428 vg~~s~~~~~--h~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-~ 496 (811)
|.+++..|.. .++..++..+.+.+.+.+++|.+++..+..... .. ......+..+.. ....-... .
T Consensus 2 il~i~~~~~p~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T cd03795 2 VLHVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGR--DE-ERNGHRVIRAPSLLNVASTPFSPSFFKQLK 78 (357)
T ss_pred eeEecCCCCCCCCcHHHHHHHHHHHHHhCCCceEEEecCCCCcch--hh-hccCceEEEeecccccccccccHHHHHHHH
Confidence 4555555543 345677788888888888999988876543221 11 111112221111 11111111 1
Q ss_pred HHhCCCeEEEeCCCCCCCcchhhhhcCCCceEEeccccCCCCCC-Cc-cc------EEEecCccCCcCC-------CCCC
Q 003557 497 INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGA-SY-ID------YLVTDEFVSPLRY-------AHIY 561 (811)
Q Consensus 497 i~~~~~dilv~~~~~~~~~~~~~~~~r~Apvq~~~~g~~~t~g~-~~-~d------~~~~d~~~~p~~~-------~~~~ 561 (811)
+...++||++-........-...+..+..|+.++|.+....... .. .. +.-+|.++.++.. ...+
T Consensus 79 ~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~~ 158 (357)
T cd03795 79 KLAKKADVIHLHFPNPLADLALLLLPRKKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNYAETSPVLRRF 158 (357)
T ss_pred hcCCCCCEEEEecCcchHHHHHHHhccCceEEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEeCcHHHHHHHHHhcCC
Confidence 56789999954332222222222222345777776543222110 00 00 0112333333221 1123
Q ss_pred ccceEEcCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecC
Q 003557 562 SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRF 639 (811)
Q Consensus 562 ~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~ 639 (811)
.+++..+|++.-..... +...........+.+.++++.+++. .|+.+.+++++.++. +.+|+++|.
T Consensus 159 ~~~~~~i~~gi~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~----~~~l~i~G~ 226 (357)
T cd03795 159 RDKVRVIPLGLDPARYP--------RPDALEEAIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAAALP----DAPLVIVGE 226 (357)
T ss_pred ccceEEecCCCChhhcC--------CcchhhhHhhcCCCCCcEEEEecccccccCHHHHHHHHHhcc----CcEEEEEeC
Confidence 35666677643321111 1000000123345566777777765 599999999988764 789999998
Q ss_pred ChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCC--CCC-hhHHHHHHHhCCCcccccCCccccch
Q 003557 640 PAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPL--CNA-HTTGTDILWAGLPMITLPLEKMATRV 716 (811)
Q Consensus 640 ~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~--~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~ 716 (811)
|+. ...+.+.+++.+. .++|.|.|..+..+....|+.+|+++-|+. .+| |++++|||++|+|||+........-
T Consensus 227 g~~-~~~~~~~~~~~~~-~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~- 303 (357)
T cd03795 227 GPL-EAELEALAAALGL-LDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSY- 303 (357)
T ss_pred Chh-HHHHHHHHHhcCC-cceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhH-
Confidence 876 7778888888898 589999999998888999999999999874 355 9999999999999996543322221
Q ss_pred hHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHH
Q 003557 717 AGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARW 774 (811)
Q Consensus 717 ~~~~l~~~g~~~~~v~--~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (811)
+..-|-.. ++. +|++++++.+..+.+|++.++.|+++.++.. ...|+.+.+
T Consensus 304 ----i~~~~~~g-~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~--~~~~s~~~~ 356 (357)
T cd03795 304 ----VNLHGVTG-LVVPPGDPAALAEAIRRLLEDPELRERLGEAARERA--EEEFTADRM 356 (357)
T ss_pred ----HhhCCCce-EEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH--HHhcchHhh
Confidence 11112333 333 5899999999999999999999999998876 335777654
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >TIGR02095 glgA glycogen/starch synthases, ADP-glucose type | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.8e-15 Score=163.28 Aligned_cols=182 Identities=16% Similarity=0.025 Sum_probs=133.4
Q ss_pred CcCCCCCCC--CcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecCCh-hhHHHHHHHHHHcCCCCCceEEcCC
Q 003557 592 KRSDYGLPE--DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPA-AGEMRLRAYAVAQGVQPDQIIFTDV 666 (811)
Q Consensus 592 ~r~~~gl~~--~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~-~~~~~l~~~~~~~gi~~~rv~~~~~ 666 (811)
+|+++|++. +.+++++++|+ .|+.+.+++++.++.+. +.+|+|+|.|+ ..++.+++...+.+ +++.|.+.
T Consensus 279 l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g~~~~~~~l~~~~~~~~---~~v~~~~~ 353 (473)
T TIGR02095 279 LQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLEL--GGQLVVLGTGDPELEEALRELAERYP---GNVRVIIG 353 (473)
T ss_pred HHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHHc--CcEEEEECCCCHHHHHHHHHHHHHCC---CcEEEEEc
Confidence 677899986 77899999887 59999999999998764 48999999874 23566777766653 56888776
Q ss_pred CChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccc--cCCHHHHHHHHH
Q 003557 667 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI--VNSMKEYEERAV 743 (811)
Q Consensus 667 ~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v--~~~~~~y~~~~~ 743 (811)
.+.++....|+.+|++|-|+.++| |++.+|||++|+|||+........-+...--...+-.. ++ ..|++++.+.+.
T Consensus 354 ~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G-~l~~~~d~~~la~~i~ 432 (473)
T TIGR02095 354 YDEALAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTG-FLFEEYDPGALLAALS 432 (473)
T ss_pred CCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCce-EEeCCCCHHHHHHHHH
Confidence 666666678899999999999988 99999999999999954322222211100000000222 22 247889988877
Q ss_pred HHhc----CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 003557 744 SLAL----DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 784 (811)
Q Consensus 744 ~l~~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 784 (811)
++.. |++.+.+|+++..+ ..|++++++++++++|++
T Consensus 433 ~~l~~~~~~~~~~~~~~~~~~~-----~~fsw~~~a~~~~~~Y~~ 472 (473)
T TIGR02095 433 RALRLYRQDPSLWEALQKNAMS-----QDFSWDKSAKQYVELYRS 472 (473)
T ss_pred HHHHHHhcCHHHHHHHHHHHhc-----cCCCcHHHHHHHHHHHHh
Confidence 7766 99988888876543 359999999999999986
|
This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate. |
| >cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-14 Score=154.38 Aligned_cols=168 Identities=17% Similarity=0.170 Sum_probs=129.8
Q ss_pred CCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHH-HHHHcCCCCCceEEcCCCChHHHHHh
Q 003557 599 PEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRA-YAVAQGVQPDQIIFTDVAMKQEHIRR 675 (811)
Q Consensus 599 ~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~-~~~~~gi~~~rv~~~~~~~~~~~~~~ 675 (811)
+++.++|+.+++. .|+.+.+++++..+.+..|+.+|+++|.++. ...... .+.+.+. .++|.|.|. ..+....
T Consensus 185 ~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~-~~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~ 260 (359)
T cd03808 185 PEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDE-ENPAAILEIEKLGL-EGRVEFLGF--RDDVPEL 260 (359)
T ss_pred CCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCc-chhhHHHHHHhcCC-cceEEEeec--cccHHHH
Confidence 3456777777765 5999999999999988889999999998765 333333 2566676 589999996 4566677
Q ss_pred cCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHH
Q 003557 676 SSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKL 752 (811)
Q Consensus 676 ~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~--~~~~~y~~~~~~l~~d~~~~ 752 (811)
|+.+|+++.|+.++| |++++|||++|+|||+........ ++.. |-.+ ++. +|++++++.+..+..|++.+
T Consensus 261 ~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~~~-----~i~~-~~~g-~~~~~~~~~~~~~~i~~l~~~~~~~ 333 (359)
T cd03808 261 LAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPGCRE-----AVID-GVNG-FLVPPGDAEALADAIERLIEDPELR 333 (359)
T ss_pred HHhccEEEecCcccCcchHHHHHHHcCCCEEEecCCCchh-----hhhc-Ccce-EEECCCCHHHHHHHHHHHHhCHHHH
Confidence 899999999987777 999999999999999865443332 2222 3333 343 47999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCChHHHHHHHH
Q 003557 753 QALTNKLKSVRLTCPLFDTARWVKNLE 779 (811)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~e 779 (811)
..+++..++.. ...|+.+.++++++
T Consensus 334 ~~~~~~~~~~~--~~~~s~~~~~~~~~ 358 (359)
T cd03808 334 ARMGQAARKRA--EEEFDEEIVVKKLL 358 (359)
T ss_pred HHHHHHHHHHH--HHhcCHHHHHHHhh
Confidence 99999888875 33599999888775
|
cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides. |
| >cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.8e-15 Score=163.19 Aligned_cols=173 Identities=13% Similarity=0.192 Sum_probs=138.6
Q ss_pred CCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecCChhh---HHHHHHHHHHcCCCCCceEEcCCCChHHHH
Q 003557 599 PEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG---EMRLRAYAVAQGVQPDQIIFTDVAMKQEHI 673 (811)
Q Consensus 599 ~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~---~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 673 (811)
+.+.++++.++|. .|..+.+++++..+.++.|+.+|+|+|.++.. .+.+++.+++.|+ .++|.|+|. .+..
T Consensus 290 ~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l-~~~V~f~G~---~~v~ 365 (475)
T cd03813 290 EKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGL-EDNVKFTGF---QNVK 365 (475)
T ss_pred CCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCC-CCeEEEcCC---ccHH
Confidence 3456788888876 59999999999999999999999999987422 4567888899999 699999993 4455
Q ss_pred HhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHh-----cCCCCccc--cCCHHHHHHHHHHH
Q 003557 674 RRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLA-----TGLGEEMI--VNSMKEYEERAVSL 745 (811)
Q Consensus 674 ~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~-----~g~~~~~v--~~~~~~y~~~~~~l 745 (811)
.+|+.+|+++.|+..+| |++++|||++|+|||+....... .++.. +|... ++ ..|++++++.+.++
T Consensus 366 ~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g~~~-----elv~~~~~~~~g~~G-~lv~~~d~~~la~ai~~l 439 (475)
T cd03813 366 EYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATDVGSCR-----ELIEGADDEALGPAG-EVVPPADPEALARAILRL 439 (475)
T ss_pred HHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECCCCChH-----HHhcCCcccccCCce-EEECCCCHHHHHHHHHHH
Confidence 56688999999988888 99999999999999964433222 22222 12334 33 35899999999999
Q ss_pred hcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 003557 746 ALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 783 (811)
Q Consensus 746 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 783 (811)
.+|++.+.+++++.+++. ...|+.+.++++++++|+
T Consensus 440 l~~~~~~~~~~~~a~~~v--~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 440 LKDPELRRAMGEAGRKRV--ERYYTLERMIDSYRRLYL 475 (475)
T ss_pred hcCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHhC
Confidence 999999999999999877 446899999999999884
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.8e-12 Score=126.89 Aligned_cols=293 Identities=17% Similarity=0.087 Sum_probs=182.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcC
Q 003557 28 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT-FPDAYLNLGNVYKALG 106 (811)
Q Consensus 28 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g 106 (811)
..-|..-+..|+|.+|.....+.-+..+....++..-+.+.-+.|+++.|-.++.++-+..++ ...+....+.+....|
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 334444555666666666666665555555555555566666666666666666666665332 2335556666666666
Q ss_pred ChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHH-----HHHHHHHHHHHcCCHHH
Q 003557 107 MPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPR---FLE-----AYNNLGNALKDVGRVDE 177 (811)
Q Consensus 107 ~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~-----~~~~la~~~~~~g~~~~ 177 (811)
+++.|.....++++..|. ..+......+|...|++.+...++.++-+..-- ... ++..+-.-....+..+.
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 666666666666666666 666666666666666666666666655533211 111 22222211122222222
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 003557 178 AIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID 257 (811)
Q Consensus 178 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (811)
-...++..-..-..++.....++.-+...|+.++|.+..+.+++..-+.. .... .-..+-++...=++..++.++..
T Consensus 248 L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~--~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 248 LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRL--IPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHH--HhhcCCCCchHHHHHHHHHHHhC
Confidence 22233333333344566677777777777777777777777776553322 1111 11235577777788888888888
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 003557 258 PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL 324 (811)
Q Consensus 258 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 324 (811)
|+++..+..+|..+.+.+.+.+|.++|+.+++..|+ ...+..+|.++.+.|+.++|.+.+++++.+
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 888888888888888888888888888888887776 557788888888888888888888888754
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-12 Score=141.03 Aligned_cols=300 Identities=16% Similarity=0.125 Sum_probs=230.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 003557 23 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVY 102 (811)
Q Consensus 23 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 102 (811)
..+.+.....++...|++++|++.+++....-.+....+...|.++.++|++++|...|...++.+|++...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 35677888899999999999999999988888888899999999999999999999999999999999999999988887
Q ss_pred HHcC-----ChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHH
Q 003557 103 KALG-----MPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADM-AILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 176 (811)
Q Consensus 103 ~~~g-----~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 176 (811)
.... ..+.-..+|++.....|...+...+...+..-..+.. +..++...+.. ..+..+.++-.+|....+..
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAA 160 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHH
Confidence 4333 4677788899888888875554444433333233433 33344444432 34556666666665444444
Q ss_pred HHHHHHHHHHhc---C----------CCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Q 003557 177 EAIQCYNQCLSL---Q----------PSHP----QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 239 (811)
Q Consensus 177 ~A~~~~~~al~~---~----------p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 239 (811)
-...++...... . ...+ -+++.++..|...|++++|+++.+++++..|..++.|...|.++..
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh 240 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 333444443321 0 1112 2557789999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--c-----HHHH--HHHHHHHHhCCC
Q 003557 240 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT--M-----AEAH--ANLASAYKDSGH 310 (811)
Q Consensus 240 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~-----~~~~--~~la~~~~~~g~ 310 (811)
.|++.+|.+.++.+.+++..+-.+-...+..+.+.|+.++|.+.+..-.+.+.+ . .-.| ...|.+|.+.|+
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999988888888899999999999999988877655421 1 1133 446889999999
Q ss_pred HHHHHHHHHHHHhc
Q 003557 311 VEAAIKSYKQALLL 324 (811)
Q Consensus 311 ~~~A~~~~~~al~~ 324 (811)
+..|++.|..+.+.
T Consensus 321 ~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 321 YGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888776
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-14 Score=154.92 Aligned_cols=316 Identities=13% Similarity=0.077 Sum_probs=192.5
Q ss_pred eEeeecCCCCCC---hhHhhHHHHhcccCCCCeEEEEEecCCCCChHHHHHHHhccCceEEC------------------
Q 003557 427 RVGYVSSDFGNH---PLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDV------------------ 485 (811)
Q Consensus 427 rvg~~s~~~~~h---~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~~~~~~~~~~~~~~------------------ 485 (811)
||.+++..+... ++..++..+.+.+.+.+++|.+++........ ... ... ......
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~-~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 77 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQ-DKE-VIG-VVVYGRPIDEVLRSALPRDLFHLS 77 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCc-ccc-ccc-ceeeccccccccCCCchhhhhHHH
Confidence 467777777543 45567777888887778899888765443211 100 000 000000
Q ss_pred CCC---CHHHHHHHHHhCCCeEEEeCCCCCCCcch-hhhhcCCCceEEeccccCCCCC-----CCcccEEEecCccCCcC
Q 003557 486 SAM---SSDMIAKLINEDKIQILINLNGYTKGARN-EIFAMQPAPIQVSYMGFPGTTG-----ASYIDYLVTDEFVSPLR 556 (811)
Q Consensus 486 ~~~---~~~~~~~~i~~~~~dilv~~~~~~~~~~~-~~~~~r~Apvq~~~~g~~~t~g-----~~~~d~~~~d~~~~p~~ 556 (811)
... ....+.+.|+..++||++-......+... ..+.....|+.++..++..... ....|.+++ ++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~hd~~~~~~~~~~~~~~~d~ii~-----~s~ 152 (359)
T cd03823 78 DYDNPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIPIVLTLHDYWLICPRQGLFKKGGDAVIA-----PSR 152 (359)
T ss_pred hccCHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcCCCEEEEEeeeeeecchhhhhccCCCEEEE-----eCH
Confidence 000 12457788889999999544332111111 1122233577665433211111 112244433 222
Q ss_pred C-----CCC-C-ccceEEcCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHh
Q 003557 557 Y-----AHI-Y-SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILR 627 (811)
Q Consensus 557 ~-----~~~-~-~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~ 627 (811)
. ... . .+++..+|++.-.... .+ ... +.+++.++|+.+++. .|+.+.+++++.++.+
T Consensus 153 ~~~~~~~~~~~~~~~~~vi~n~~~~~~~--------~~----~~~--~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~ 218 (359)
T cd03823 153 FLLDRYVANGLFAEKISVIRNGIDLDRA--------KR----PRR--APPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR 218 (359)
T ss_pred HHHHHHHHcCCCccceEEecCCcChhhc--------cc----ccc--CCCCCceEEEEEecCccccCHHHHHHHHHHHHh
Confidence 1 111 1 2344444443221110 01 000 355667788887765 5999999999998876
Q ss_pred hcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCC-CCC-hhHHHHHHHhCCCcc
Q 003557 628 RVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPL-CNA-HTTGTDILWAGLPMI 705 (811)
Q Consensus 628 ~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~-~~g-~~t~~eal~~g~Pvv 705 (811)
|+.+|+++|.++. ........ +. .++|.|.|..+..+....+..+|+++.|+. ++| |++++|||++|+|||
T Consensus 219 --~~~~l~i~G~~~~-~~~~~~~~---~~-~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi 291 (359)
T cd03823 219 --GDIELVIVGNGLE-LEEESYEL---EG-DPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVI 291 (359)
T ss_pred --cCcEEEEEcCchh-hhHHHHhh---cC-CCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEE
Confidence 8899999998765 33322222 55 578999999988999999999999999975 455 999999999999999
Q ss_pred cccCCccccchhHHHHHhcCCCCccc-cCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 003557 706 TLPLEKMATRVAGSLCLATGLGEEMI-VNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 783 (811)
Q Consensus 706 t~~g~~~~~r~~~~~l~~~g~~~~~v-~~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 783 (811)
+........ ++.. |....++ .+|.+++++.+.++.+|++.+..++++.++.. +.+.++++++++|+
T Consensus 292 ~~~~~~~~e-----~i~~-~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 358 (359)
T cd03823 292 ASDIGGMAE-----LVRD-GVNGLLFPPGDAEDLAAALERLIDDPDLLERLRAGIEPPR------SIEDQAEEYLKLYR 358 (359)
T ss_pred ECCCCCHHH-----HhcC-CCcEEEECCCCHHHHHHHHHHHHhChHHHHHHHHhHHHhh------hHHHHHHHHHHHhh
Confidence 765443322 2222 2233122 24689999999999999999999999988764 22888899888885
|
ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II). |
| >PRK10125 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-14 Score=154.74 Aligned_cols=307 Identities=9% Similarity=0.057 Sum_probs=179.5
Q ss_pred ceEeeecCCCCCChhHhhHHHHhcccCCCCeEEEEEecCCC-CChH---------------HHHHHHhccCceEECCC-C
Q 003557 426 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPN-DGTE---------------WRQRTQSEAEHFVDVSA-M 488 (811)
Q Consensus 426 lrvg~~s~~~~~h~~~~~l~~l~~~~d~~~~ev~~y~~~~~-~~~~---------------~~~~~~~~~~~~~~~~~-~ 488 (811)
+||.++...++..++++.+..+...+.+.++|+.+...... .... +...+-..-.+..+..+ .
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTPRMTAMANIALFRLFNRDLFG 80 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccccccCCcceEEEecccHHHHHHHHHHHhcchhhcc
Confidence 47889999999999999999999999888899876443321 1110 01111000011222222 2
Q ss_pred CHHHHHHHH-HhCCCeEEEeCCCCCCCcch---hh---hh-------c-CCCceEEeccccCCCCCC-C-----------
Q 003557 489 SSDMIAKLI-NEDKIQILINLNGYTKGARN---EI---FA-------M-QPAPIQVSYMGFPGTTGA-S----------- 541 (811)
Q Consensus 489 ~~~~~~~~i-~~~~~dilv~~~~~~~~~~~---~~---~~-------~-r~Apvq~~~~g~~~t~g~-~----------- 541 (811)
+...+.+.| +..++||+ |+|.-.. ++ +. . +-.||..|...+..-||- .
T Consensus 81 ~~~~~~~~i~~~~~pDvi-----HlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~ 155 (405)
T PRK10125 81 NFNELYRTITRTPGPVVL-----HFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTG 155 (405)
T ss_pred hHHHHHHHHhhccCCCEE-----EEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCccccccccc
Confidence 456778888 67899999 7764322 22 21 1 225898875444322211 0
Q ss_pred -----c--------ccE-----------E-----EecCccCCcCCC-----CCC-ccceEEcCCccccCCCccccccCCC
Q 003557 542 -----Y--------IDY-----------L-----VTDEFVSPLRYA-----HIY-SEKLVHVPHCYFVNDYKQKNMDVLD 586 (811)
Q Consensus 542 -----~--------~d~-----------~-----~~d~~~~p~~~~-----~~~-~e~~~~lp~~~~~~~~~~~~~~~~~ 586 (811)
. +|. + ..+.++.|++.- ..+ .+++..+|++.-.... .+.
T Consensus 156 c~~Cp~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~~~~~i~vI~NGid~~~~------~~~ 229 (405)
T PRK10125 156 CQKCPTLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIINNGIDMATE------AIL 229 (405)
T ss_pred CCCCCCccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHcCCCCEEEeCCCcCcccc------ccc
Confidence 0 111 0 012233333210 000 1233334433211000 000
Q ss_pred CCCCCCcCCCCCCCCcEEEEecCC----CCCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceE
Q 003557 587 PNCQPKRSDYGLPEDKFIFACFNQ----LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQII 662 (811)
Q Consensus 587 ~~~~~~r~~~gl~~~~~~~~~~~~----~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~ 662 (811)
+...+.| .+++..+++.+++ ..|+.+.+++++.++ .++.+|+++|.++. .. .++|.
T Consensus 230 ~~~~~~~----~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l---~~~~~L~ivG~g~~-~~------------~~~v~ 289 (405)
T PRK10125 230 AELPPVR----ETQGKPKIAVVAHDLRYDGKTDQQLVREMMAL---GDKIELHTFGKFSP-FT------------AGNVV 289 (405)
T ss_pred ccccccc----cCCCCCEEEEEEeccccCCccHHHHHHHHHhC---CCCeEEEEEcCCCc-cc------------ccceE
Confidence 0001111 1334556666665 247789999988764 35789999997643 11 25688
Q ss_pred EcCCC-ChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCcccc--------
Q 003557 663 FTDVA-MKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV-------- 732 (811)
Q Consensus 663 ~~~~~-~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~-------- 732 (811)
+.|.. +..+....|+.+|+|+.|+.++| |++++|||++|+||| ++++| |++| +|.
T Consensus 290 ~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVV-------at~~g-------G~~E-iv~~~~G~lv~ 354 (405)
T PRK10125 290 NHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVI-------ATHSD-------AARE-VLQKSGGKTVS 354 (405)
T ss_pred EecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEE-------EeCCC-------ChHH-hEeCCcEEEEC
Confidence 88865 56778889999999999999999 999999999999999 56666 5555 442
Q ss_pred -CCHHHHHHHHHHHhcCHHHHHH-HH---HHHHhhcccCCCCChHHHHHHHHHHHHHH
Q 003557 733 -NSMKEYEERAVSLALDRQKLQA-LT---NKLKSVRLTCPLFDTARWVKNLERSYFKM 785 (811)
Q Consensus 733 -~~~~~y~~~~~~l~~d~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~e~~y~~~ 785 (811)
.|++++++. .+++.+.+ ++ +..|++. ...|+.+.++++++++|+++
T Consensus 355 ~~d~~~La~~-----~~~~~~~~~~~~~~~~~r~~~--~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 355 EEEVLQLAQL-----SKPEIAQAVFGTTLAEFSQRS--RAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred CCCHHHHHhc-----cCHHHHHHhhhhHHHHHHHHH--HHhCCHHHHHHHHHHHHHhC
Confidence 356666542 36555543 22 3344444 34599999999999999763
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-12 Score=127.01 Aligned_cols=318 Identities=16% Similarity=0.114 Sum_probs=237.3
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------hCC-----------
Q 003557 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR--------------IQP----------- 55 (811)
Q Consensus 1 l~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------~~p----------- 55 (811)
+..|+|++|+..|+-+.+.+..+.+.+..++-+++-.|.|.+|...-.++-+ ++.
T Consensus 68 fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~L 147 (557)
T KOG3785|consen 68 FHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSL 147 (557)
T ss_pred HhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 3579999999999999887777788999999999999999999987665421 111
Q ss_pred -CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHH
Q 003557 56 -TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLAS 133 (811)
Q Consensus 56 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~ 133 (811)
+..+-...++.+.+..-.|++|++.|++.+..+|+.......++.+|+++.-++-+.+++.-.++..|+ ..+.+..+.
T Consensus 148 qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkac 227 (557)
T KOG3785|consen 148 QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKAC 227 (557)
T ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 113344567777777888999999999999999988888888999999999999999999998988888 555544444
Q ss_pred HHHHc--CCHHH----------------HHHHHHH----------HHHcCC----CcHHHHHHHHHHHHHcCCHHHHHHH
Q 003557 134 TYYER--GQADM----------------AILYYKQ----------AIGCDP----RFLEAYNNLGNALKDVGRVDEAIQC 181 (811)
Q Consensus 134 ~~~~~--g~~~~----------------A~~~~~~----------al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~ 181 (811)
..++. |+..+ +..+++. +++.-| --+++..+++..|.++++.++|..+
T Consensus 228 n~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L 307 (557)
T KOG3785|consen 228 NLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISL 307 (557)
T ss_pred HHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHH
Confidence 44433 22211 1111111 111122 1356778888889999999999887
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhc---------cCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 003557 182 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV---------TTGLSAPFNNLAVIYKQQGNYADAISCYNE 252 (811)
Q Consensus 182 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (811)
.+ +++|..|.-+...|.+....|+--...+.++.+.+. .-+.......++..++-..++++.+.+++.
T Consensus 308 ~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnS 384 (557)
T KOG3785|consen 308 CK---DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNS 384 (557)
T ss_pred Hh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 468888888888888888888755555544444322 122334466778888888899999999988
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 003557 253 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR-PTMAEAHANLASAYKDSGHVEAAIKSYKQA 321 (811)
Q Consensus 253 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 321 (811)
.-...-++-...+++++++...|++.+|.+.|-+.-..+ .+.......|++||...|+.+.|.+.+-+.
T Consensus 385 i~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 385 IESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 887778888899999999999999999999998877655 334445677999999999999998877543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-11 Score=122.44 Aligned_cols=295 Identities=15% Similarity=0.008 Sum_probs=240.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hhHHHhHHHHHHHc
Q 003557 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYER 138 (811)
Q Consensus 61 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~la~~~~~~ 138 (811)
...-|..-+..|+|.+|++...+.-+..+...-.+..-+.+....|+++.|-.++.++-+..++ .......+.+....
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 3444555667899999999999988888877778888889999999999999999999998444 77788889999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh--------HHHHHHHHHHHHcCChH
Q 003557 139 GQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP--------QALTNLGNIYMEWNMLP 210 (811)
Q Consensus 139 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--------~~~~~la~~~~~~g~~~ 210 (811)
|+++.|.....++++..|.++.+......+|...|++.+...++.++-+..--+. .++..+-.-....+..+
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 9999999999999999999999999999999999999999999998887543222 13333322233333334
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 003557 211 AAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 290 (811)
Q Consensus 211 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (811)
.-..+.+..-..-..++.....++.-+...|++++|.+..+++++..-+. .....++ ...-++...=++..++.++.
T Consensus 247 gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~L~~~~~--~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 247 GLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-RLCRLIP--RLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-hHHHHHh--hcCCCCchHHHHHHHHHHHh
Confidence 43446665555556678888899999999999999999999999875432 2222222 23568889999999999999
Q ss_pred CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHH
Q 003557 291 RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGII 359 (811)
Q Consensus 291 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l~ 359 (811)
.|+++..+..||.++.+.+.+.+|.++|+.+++..|+. ..+..++..+...|+..+|...++++..++
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998874 456778999999999999999999998543
|
|
| >TIGR02918 accessory Sec system glycosylation protein GtfA | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.1e-14 Score=157.36 Aligned_cols=166 Identities=13% Similarity=0.119 Sum_probs=132.7
Q ss_pred EEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCc
Q 003557 603 FIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 680 (811)
Q Consensus 603 ~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~D 680 (811)
+++++++|+ .|..+.++++|.++.+..|+.+|.|+|.|+. .+.+++.+++.|+ .++|.|.|..+..+ .|+.+|
T Consensus 320 ~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~-~~~l~~~i~~~~l-~~~V~f~G~~~~~~---~~~~ad 394 (500)
T TIGR02918 320 FSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGGE-KQKLQKIINENQA-QDYIHLKGHRNLSE---VYKDYE 394 (500)
T ss_pred eEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECchh-HHHHHHHHHHcCC-CCeEEEcCCCCHHH---HHHhCC
Confidence 456666655 5999999999999999999999999999886 7889999999999 69999999765444 467899
Q ss_pred EEecCCCCCC-hhHHHHHHHhCCCcccccCC-ccccchhHHHHHhcCCCCccccC------C----HHHHHHHHHHHhcC
Q 003557 681 LFLDTPLCNA-HTTGTDILWAGLPMITLPLE-KMATRVAGSLCLATGLGEEMIVN------S----MKEYEERAVSLALD 748 (811)
Q Consensus 681 v~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~-~~~~r~~~~~l~~~g~~~~~v~~------~----~~~y~~~~~~l~~d 748 (811)
+++.|+.++| |.|++|||++|+|||+..-. ... .++.. |.++ ++.. | ++++++++.+|. +
T Consensus 395 v~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G~~-----eiI~~-g~nG-~lv~~~~~~~d~~~~~~~la~~I~~ll-~ 466 (500)
T TIGR02918 395 LYLSASTSEGFGLTLMEAVGSGLGMIGFDVNYGNP-----TFIED-NKNG-YLIPIDEEEDDEDQIITALAEKIVEYF-N 466 (500)
T ss_pred EEEEcCccccccHHHHHHHHhCCCEEEecCCCCCH-----HHccC-CCCE-EEEeCCccccchhHHHHHHHHHHHHHh-C
Confidence 9999998888 99999999999999964311 111 22222 6666 5443 2 788999999998 4
Q ss_pred HHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 003557 749 RQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 784 (811)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 784 (811)
++.+.+|++..++.. ..|+.+..++++++++++
T Consensus 467 ~~~~~~~~~~a~~~a---~~fs~~~v~~~w~~ll~~ 499 (500)
T TIGR02918 467 SNDIDAFHEYSYQIA---EGFLTANIIEKWKKLVRE 499 (500)
T ss_pred hHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHhh
Confidence 567899999998854 349999999999988865
|
Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system. |
| >KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-14 Score=138.89 Aligned_cols=212 Identities=14% Similarity=0.186 Sum_probs=152.9
Q ss_pred CcccEEEecCccCCcCC---CCCCccceEEcCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCC
Q 003557 541 SYIDYLVTDEFVSPLRY---AHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMD 615 (811)
Q Consensus 541 ~~~d~~~~d~~~~p~~~---~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~--~K~~ 615 (811)
..+|.+|.-.....++. ...-.+++..+|+......+.+ ++...+ +.+.+++...+|+ .|+.
T Consensus 144 ~~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P------~~~~~~-------S~~i~~ivv~sRLvyrKGi 210 (426)
T KOG1111|consen 144 ANIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTP------DAADKP-------SADIITIVVASRLVYRKGI 210 (426)
T ss_pred cCCCcEEEEeecCCCceEEEeccCHhHeeeccceeecccccc------CccccC-------CCCeeEEEEEeeeeeccch
Confidence 34555554333333332 2233567778888665544321 111111 1222566666776 4999
Q ss_pred HHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCC-hhHH
Q 003557 616 PEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTG 694 (811)
Q Consensus 616 ~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~ 694 (811)
+-++++..++.++.|+++++++|+||- +..+++..+++-+ .+||.|+|.++.++.-..|..-||||.|+..+. |+++
T Consensus 211 Dll~~iIp~vc~~~p~vrfii~GDGPk-~i~lee~lEk~~l-~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~i 288 (426)
T KOG1111|consen 211 DLLLEIIPSVCDKHPEVRFIIIGDGPK-RIDLEEMLEKLFL-QDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVI 288 (426)
T ss_pred HHHHHHHHHHHhcCCCeeEEEecCCcc-cchHHHHHHHhhc-cCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHH
Confidence 999999999999999999999999997 8888999999999 699999999999999999999999999998888 9999
Q ss_pred HHHHHhCCCcccccCCccccchhHHHHHhcCCCCccccC--------CHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccC
Q 003557 695 TDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--------SMKEYEERAVSLALDRQKLQALTNKLKSVRLTC 766 (811)
Q Consensus 695 ~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~--------~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~ 766 (811)
+||+.||+||| .+||| |+|| .+.. ++++.++....-.+..... -....++. .
T Consensus 289 vEAaScGL~VV-------sTrVG-------GIpe-VLP~d~i~~~~~~~~dl~~~v~~ai~~~~~~---p~~~h~~v--~ 348 (426)
T KOG1111|consen 289 VEAASCGLPVV-------STRVG-------GIPE-VLPEDMITLGEPGPDDLVGAVEKAITKLRTL---PLEFHDRV--K 348 (426)
T ss_pred HHHHhCCCEEE-------EeecC-------Cccc-cCCccceeccCCChHHHHHHHHHHHHHhccC---chhHHHHH--H
Confidence 99999999999 79999 9999 5543 3556555444332221111 11122333 4
Q ss_pred CCCChHHHHHHHHHHHHHHHH
Q 003557 767 PLFDTARWVKNLERSYFKMWS 787 (811)
Q Consensus 767 ~~~~~~~~~~~~e~~y~~~~~ 787 (811)
..++++..+++.|..|.++..
T Consensus 349 ~~y~w~dVa~rTekvy~r~~~ 369 (426)
T KOG1111|consen 349 KMYSWKDVAERTEKVYDRAAT 369 (426)
T ss_pred HhccHHHHHHHHHHHHHHHhh
Confidence 469999999999999987754
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.7e-12 Score=137.67 Aligned_cols=306 Identities=14% Similarity=0.091 Sum_probs=234.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHH
Q 003557 57 FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTY 135 (811)
Q Consensus 57 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~ 135 (811)
+.+.+.....++...|++++|++.+++..+.-.+...+....|.++.++|++++|...|..+++.+|+ ...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 35677888899999999999999999998888888899999999999999999999999999999999 66666666666
Q ss_pred HHc-----CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHcCCh
Q 003557 136 YER-----GQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDE-AIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 209 (811)
Q Consensus 136 ~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 209 (811)
... .+.+.-..+|++.....|..... ..+...+..-..+.. +..++...+.. .-|....++-.+|....+.
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~-~rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAP-RRLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKA 159 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccch-hHhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHH
Confidence 332 25677788888888888775422 222222222223333 33444444443 3456666666666654444
Q ss_pred HHHHHHHHHHHhc---------------cCCC--chHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003557 210 PAAASYYKATLAV---------------TTGL--SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYK 272 (811)
Q Consensus 210 ~~A~~~~~~~l~~---------------~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 272 (811)
.-...++...... .|.. ..+++.++..|...|++++|+++++++++..|..++.+...|.++.
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK 239 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 4333444443321 0111 1346788999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChH-------HH--HHHHHHhhhcC
Q 003557 273 EIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE-------AT--CNLLHTLQCVC 343 (811)
Q Consensus 273 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~--~~l~~~~~~~~ 343 (811)
..|++.+|.+.++.+-+++..+-.+-...+..+.+.|+.++|.+.+......+-+... .| ...+.++...|
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999989999999999999999999999988766522111 22 24577888999
Q ss_pred ChhhHhHHHHHHHHHHHHHhcc
Q 003557 344 SWEDRDRMFSEVEGIIRRQVNM 365 (811)
Q Consensus 344 ~~~~a~~~~~~a~~l~~~~~~~ 365 (811)
++..|.+.|..+.+++.+....
T Consensus 320 ~~~~ALk~~~~v~k~f~~~~~D 341 (517)
T PF12569_consen 320 DYGLALKRFHAVLKHFDDFEED 341 (517)
T ss_pred hHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999987654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-11 Score=127.88 Aligned_cols=338 Identities=14% Similarity=0.021 Sum_probs=223.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 003557 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 80 (811)
Q Consensus 1 l~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 80 (811)
++.++|++|+.+.+.-......+ ...+..+.|.++.++.++|+..++ ..++.+.......|++++++|+|++|...
T Consensus 57 Iq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdi 132 (652)
T KOG2376|consen 57 IQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDI 132 (652)
T ss_pred hhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHH
Confidence 45678888886555433222222 222788999999999999999998 45666677888999999999999999999
Q ss_pred HHHHHhcCCC-------------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------
Q 003557 81 YKEAVKLKPT-------------------------------FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR------- 122 (811)
Q Consensus 81 ~~~al~~~p~-------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 122 (811)
|+...+.+.+ ..+.+++.+.++...|+|.+|++.+++++++.
T Consensus 133 Y~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~ 212 (652)
T KOG2376|consen 133 YQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDE 212 (652)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhccc
Confidence 9998654322 23467888888899999999999998884431
Q ss_pred -CC--------hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH----H--------------------------
Q 003557 123 -PN--------AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAY----N-------------------------- 163 (811)
Q Consensus 123 -p~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----~-------------------------- 163 (811)
.+ ..+...++.++..+|+.++|...|...++.+|.+.... +
T Consensus 213 d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~ 292 (652)
T KOG2376|consen 213 DTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFK 292 (652)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHH
Confidence 11 33566788888889999999998888887765443211 1
Q ss_pred -------------------HHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccC
Q 003557 164 -------------------NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT 224 (811)
Q Consensus 164 -------------------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 224 (811)
+.+.+.+..+.-+.+.+...+.-...|..................+.+|.+++....+.+|
T Consensus 293 l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p 372 (652)
T KOG2376|consen 293 LAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHP 372 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCC
Confidence 1111111111222222111111111111111111222222233367788888888888888
Q ss_pred CC-chHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------
Q 003557 225 GL-SAPFNNLAVIYKQQGNYADAISCYNEVLRI-------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI------ 290 (811)
Q Consensus 225 ~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 290 (811)
.. ..+...++.+.+.+|+++.|++.+...++. ....+.+-..+-..+...++.+-|...+.+++..
T Consensus 373 ~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t 452 (652)
T KOG2376|consen 373 EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQT 452 (652)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcc
Confidence 77 567788899999999999999999843321 1122334444555566666655555555555543
Q ss_pred -CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhc
Q 003557 291 -RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCV 342 (811)
Q Consensus 291 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 342 (811)
.+.....+..++..-.+.|+-++|...+++.++.+|++.++...+..++...
T Consensus 453 ~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 453 GSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc
Confidence 3333445666777888889999999999999999999999999998888753
|
|
| >PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.3e-14 Score=154.81 Aligned_cols=181 Identities=13% Similarity=0.103 Sum_probs=127.3
Q ss_pred CcCCCCCCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCC----
Q 003557 592 KRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVA---- 667 (811)
Q Consensus 592 ~r~~~gl~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~---- 667 (811)
.|..+| + +..++.+.++..|....++++|.++.++.|+.+|+|+|.|+...+.+++.+++.|+. .+.|.+..
T Consensus 225 ~r~~~~-~-~~~vil~~~~~~~~~~~ll~A~~~l~~~~~~~~liivG~g~~r~~~l~~~~~~~gl~--~~~~~~~~~~~~ 300 (425)
T PRK05749 225 LRRQLA-P-NRPVWIAASTHEGEEELVLDAHRALLKQFPNLLLILVPRHPERFKEVEELLKKAGLS--YVRRSQGEPPSA 300 (425)
T ss_pred HHHHhc-C-CCcEEEEeCCCchHHHHHHHHHHHHHHhCCCcEEEEcCCChhhHHHHHHHHHhCCCc--EEEccCCCCCCC
Confidence 455666 4 344555556667778889999999998899999999999886337899999999984 24444311
Q ss_pred --------ChHHHHHhcCCCcE-EecCCC-CCChhHHHHHHHhCCCcccccCCccccchhH--HHHHhcCCCCccccCCH
Q 003557 668 --------MKQEHIRRSSLADL-FLDTPL-CNAHTTGTDILWAGLPMITLPLEKMATRVAG--SLCLATGLGEEMIVNSM 735 (811)
Q Consensus 668 --------~~~~~~~~~~~~Dv-~ld~~~-~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~--~~l~~~g~~~~~v~~~~ 735 (811)
...+...+|+.+|| |+-++. .+||.+++|||++|+|||+-+.. +.++. ..+...|.- +...|+
T Consensus 301 ~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~---~~~~e~~~~~~~~g~~--~~~~d~ 375 (425)
T PRK05749 301 DTDVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHT---FNFKEIFERLLQAGAA--IQVEDA 375 (425)
T ss_pred CCcEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCc---cCHHHHHHHHHHCCCe--EEECCH
Confidence 23577788999999 454443 45699999999999999964321 11221 222223431 235799
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHH
Q 003557 736 KEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMW 786 (811)
Q Consensus 736 ~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~ 786 (811)
+++.+.+.+|.+|++.+.+|+++.++..... .+.++++.+.+.+.+
T Consensus 376 ~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~-----~~~~~~~~~~l~~~l 421 (425)
T PRK05749 376 EDLAKAVTYLLTDPDARQAYGEAGVAFLKQN-----QGALQRTLQLLEPYL 421 (425)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC-----ccHHHHHHHHHHHhc
Confidence 9999999999999999999999998876432 355566666665543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.4e-13 Score=135.30 Aligned_cols=185 Identities=19% Similarity=0.140 Sum_probs=139.8
Q ss_pred hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH---HHHH
Q 003557 125 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL---EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ---ALTN 198 (811)
Q Consensus 125 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 198 (811)
...++.+|..+...|++++|+..+++++..+|+++ .+++.+|.++...|++++|+..|+++++..|+++. +++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 77888888888888999999999988888888765 57788888888889999999999998888887765 6778
Q ss_pred HHHHHHHc--------CChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 003557 199 LGNIYMEW--------NMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNT 270 (811)
Q Consensus 199 la~~~~~~--------g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 270 (811)
+|.++... |++++|++.+++++...|++...+..+..+... ... .......+|..
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~----~~~-------------~~~~~~~~a~~ 175 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL----RNR-------------LAGKELYVARF 175 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH----HHH-------------HHHHHHHHHHH
Confidence 88888765 677778888888887777765544322221110 000 01223467788
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 003557 271 YKEIGRVTDAIQDYIRAITIRPT---MAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 326 (811)
Q Consensus 271 ~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 326 (811)
+...|++.+|+..++++++..|+ .+.+++.+|.++...|++++|..+++......|
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 88888888888888888888665 357888888888888888888888887766655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.5e-13 Score=134.61 Aligned_cols=188 Identities=19% Similarity=0.147 Sum_probs=151.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---
Q 003557 20 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA---IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD--- 93 (811)
Q Consensus 20 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 93 (811)
++..+..++.+|..+...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 345778999999999999999999999999999998875 57899999999999999999999999999998776
Q ss_pred HHHHHHHHHHHc--------CChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 003557 94 AYLNLGNVYKAL--------GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNN 164 (811)
Q Consensus 94 ~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 164 (811)
+++.+|.++... |++++|++.|+++++.+|+ ...+..+..+... ... .......
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~----~~~-------------~~~~~~~ 171 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL----RNR-------------LAGKELY 171 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH----HHH-------------HHHHHHH
Confidence 688899998876 7889999999999999887 3332222111110 000 0123357
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhccC
Q 003557 165 LGNALKDVGRVDEAIQCYNQCLSLQPSH---PQALTNLGNIYMEWNMLPAAASYYKATLAVTT 224 (811)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 224 (811)
+|..+...|++++|+..++++++..|+. +.++..+|.++...|++++|..+++.+....|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 7888999999999999999999987764 47899999999999999999998888776655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding | Back alignment and domain information |
|---|
Probab=99.55 E-value=9e-14 Score=151.24 Aligned_cols=162 Identities=15% Similarity=0.196 Sum_probs=127.4
Q ss_pred EEEEecCC--CCCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCc
Q 003557 603 FIFACFNQ--LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 680 (811)
Q Consensus 603 ~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~D 680 (811)
+.++.++| ..|..+.+++++.++.++.|+.+|.++|.|+. ...+.....+.++ .++|.|.|. ..+....|+.+|
T Consensus 205 ~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~ad 280 (372)
T cd04949 205 HKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDE-EEKLKELIEELGL-EDYVFLKGY--TRDLDEVYQKAQ 280 (372)
T ss_pred CeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCch-HHHHHHHHHHcCC-cceEEEcCC--CCCHHHHHhhhh
Confidence 44555554 46999999999999999999999999998876 6778888889999 689999993 455667789999
Q ss_pred EEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccccC--CHHHHHHHHHHHhcCHHHHHHHHH
Q 003557 681 LFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLALDRQKLQALTN 757 (811)
Q Consensus 681 v~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~--~~~~y~~~~~~l~~d~~~~~~~~~ 757 (811)
++|+|+.++| |.+++|||++|+|||+...... ...++.. |-.+ ++.+ |++++++.+.++.+|++.+..+++
T Consensus 281 ~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g----~~~~v~~-~~~G-~lv~~~d~~~la~~i~~ll~~~~~~~~~~~ 354 (372)
T cd04949 281 LSLLTSQSEGFGLSLMEALSHGLPVISYDVNYG----PSEIIED-GENG-YLVPKGDIEALAEAIIELLNDPKLLQKFSE 354 (372)
T ss_pred EEEecccccccChHHHHHHhCCCCEEEecCCCC----cHHHccc-CCCc-eEeCCCcHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999998887 9999999999999996542110 0122221 4555 5555 899999999999999999999999
Q ss_pred HHHhhcccCCCCChHHHHHH
Q 003557 758 KLKSVRLTCPLFDTARWVKN 777 (811)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~ 777 (811)
..++... .|+.+.++++
T Consensus 355 ~a~~~~~---~~s~~~~~~~ 371 (372)
T cd04949 355 AAYENAE---RYSEENVWEK 371 (372)
T ss_pred HHHHHHH---HhhHHHHHhc
Confidence 9887642 3887776553
|
In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra |
| >PRK14098 glycogen synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.6e-14 Score=153.93 Aligned_cols=183 Identities=10% Similarity=0.063 Sum_probs=134.1
Q ss_pred CcCCCCCC--CCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecCChhh-HHHHHHHHHHcCCCCCceEEcCC
Q 003557 592 KRSDYGLP--EDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG-EMRLRAYAVAQGVQPDQIIFTDV 666 (811)
Q Consensus 592 ~r~~~gl~--~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~-~~~l~~~~~~~gi~~~rv~~~~~ 666 (811)
++.++|++ ++.++|++++|+ .|+.+.+++++.++++ ++.+|+|+|.|+.. ++.+++.++++ +++|.|.|.
T Consensus 295 l~~~lgl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~--~~~~lvivG~G~~~~~~~l~~l~~~~---~~~V~~~g~ 369 (489)
T PRK14098 295 LLEEVGLPFDEETPLVGVIINFDDFQGAELLAESLEKLVE--LDIQLVICGSGDKEYEKRFQDFAEEH---PEQVSVQTE 369 (489)
T ss_pred HHHHhCCCCccCCCEEEEeccccccCcHHHHHHHHHHHHh--cCcEEEEEeCCCHHHHHHHHHHHHHC---CCCEEEEEe
Confidence 45678887 357899999977 4999999999999875 47999999987642 46787777776 378999998
Q ss_pred CChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccc--cCCHHHHHHHHH
Q 003557 667 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI--VNSMKEYEERAV 743 (811)
Q Consensus 667 ~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v--~~~~~~y~~~~~ 743 (811)
.+..+....|+.+|+||-|+.+++ |++.+|||++|+|+|+........-+.. +... |-++ ++ ..|++++.+.+.
T Consensus 370 ~~~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~-~~~~-~~~G-~l~~~~d~~~la~ai~ 446 (489)
T PRK14098 370 FTDAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE-VSED-KGSG-FIFHDYTPEALVAKLG 446 (489)
T ss_pred cCHHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec-CCCC-CCce-eEeCCCCHHHHHHHHH
Confidence 787777788999999999998988 9999999999988874332222111100 0000 1122 22 247888887766
Q ss_pred H---HhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 003557 744 S---LALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 787 (811)
Q Consensus 744 ~---l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 787 (811)
+ +.+|++.+.+++++. + ...|+++.++++++++|+++++
T Consensus 447 ~~l~~~~~~~~~~~~~~~~---~--~~~fsw~~~a~~y~~lY~~~~~ 488 (489)
T PRK14098 447 EALALYHDEERWEELVLEA---M--ERDFSWKNSAEEYAQLYRELLG 488 (489)
T ss_pred HHHHHHcCHHHHHHHHHHH---h--cCCCChHHHHHHHHHHHHHHhc
Confidence 5 447888877776543 2 2459999999999999998763
|
|
| >PLN00142 sucrose synthase | Back alignment and domain information |
|---|
Probab=99.54 E-value=7e-14 Score=157.67 Aligned_cols=177 Identities=14% Similarity=0.093 Sum_probs=134.2
Q ss_pred CCCCC--CCCcEEEEecCCCC--CCCHHHHHHHHHHHhhcCCeEEEeecCChh-----h------HHHHHHHHHHcCCCC
Q 003557 594 SDYGL--PEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPNSALWLLRFPAA-----G------EMRLRAYAVAQGVQP 658 (811)
Q Consensus 594 ~~~gl--~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~l~~~~~~-----~------~~~l~~~~~~~gi~~ 658 (811)
+.+|+ +.+..++++++|+. |+.+.+++++.++.+..|+++|+|+|++.. . ..++.+.+.+.|+ .
T Consensus 563 e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL-~ 641 (815)
T PLN00142 563 EHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNL-K 641 (815)
T ss_pred HHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCC-C
Confidence 34676 44566888889874 999999999999877778899999987621 0 1357778899999 6
Q ss_pred CceEEcCCC----ChHHHHHhcC-CCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhH--HHHHhcCCCCcc
Q 003557 659 DQIIFTDVA----MKQEHIRRSS-LADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAG--SLCLATGLGEEM 730 (811)
Q Consensus 659 ~rv~~~~~~----~~~~~~~~~~-~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~--~~l~~~g~~~~~ 730 (811)
++|.|+|.. +..+...++. .+|||+.|+.++| |+|++|||++|+||| ++++|+ .++.. |.++ +
T Consensus 642 ~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVV-------ATdvGG~~EIV~d-G~tG-~ 712 (815)
T PLN00142 642 GQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTF-------ATCQGGPAEIIVD-GVSG-F 712 (815)
T ss_pred CcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEE-------EcCCCCHHHHhcC-CCcE-E
Confidence 999999843 2355665555 5799999999999 999999999999999 555651 11111 4444 3
Q ss_pred cc--CCHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 003557 731 IV--NSMKEYEERAVSL----ALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 782 (811)
Q Consensus 731 v~--~~~~~y~~~~~~l----~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 782 (811)
+. .|++++++.+.++ .+|++.+.+|+++.+++. ...|+++.++++++++-
T Consensus 713 LV~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~rv--~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 713 HIDPYHGDEAANKIADFFEKCKEDPSYWNKISDAGLQRI--YECYTWKIYAERLLTLG 768 (815)
T ss_pred EeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHH
Confidence 33 4788888877654 579999999999998876 33599999999998764
|
|
| >cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-13 Score=149.11 Aligned_cols=173 Identities=14% Similarity=0.099 Sum_probs=135.0
Q ss_pred CCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHH
Q 003557 594 SDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQE 671 (811)
Q Consensus 594 ~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~ 671 (811)
...+.+++.++++.+++. .|+.+.+++++.++.+. |+.+|+++|.++. ...+.+.....++ ++|.|.|..+.++
T Consensus 212 ~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~~~l~i~G~~~~-~~~~~~~~~~~~~--~~v~~~g~~~~~~ 287 (394)
T cd03794 212 RKELGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-PDIRFLIVGDGPE-KEELKELAKALGL--DNVTFLGRVPKEE 287 (394)
T ss_pred hhccCCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-CCeEEEEeCCccc-HHHHHHHHHHcCC--CcEEEeCCCChHH
Confidence 344556677888888866 59999999999999887 8999999998876 6677777667676 5799999888899
Q ss_pred HHHhcCCCcEEecCCCCCC------hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCcccc-CCHHHHHHHHHH
Q 003557 672 HIRRSSLADLFLDTPLCNA------HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV-NSMKEYEERAVS 744 (811)
Q Consensus 672 ~~~~~~~~Dv~ld~~~~~g------~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~-~~~~~y~~~~~~ 744 (811)
....|+.+|+++.|+..++ +++++|||++|+|||+.+......-+. . +-...++. .|++++++.+.+
T Consensus 288 ~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~-----~-~~~g~~~~~~~~~~l~~~i~~ 361 (394)
T cd03794 288 LPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVE-----E-AGAGLVVPPGDPEALAAAILE 361 (394)
T ss_pred HHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhhc-----c-CCcceEeCCCCHHHHHHHHHH
Confidence 9999999999999876543 677899999999999766544333222 1 11221332 489999999999
Q ss_pred HhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHH
Q 003557 745 LALDRQKLQALTNKLKSVRLTCPLFDTARWVKNL 778 (811)
Q Consensus 745 l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (811)
+..|++.+..++++.++... ..|+.+.+++++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~ 393 (394)
T cd03794 362 LLDDPEERAEMGENGRRYVE--EKFSREKLAERL 393 (394)
T ss_pred HHhChHHHHHHHHHHHHHHH--HhhcHHHHHHhc
Confidence 99999999999999888763 358988888765
|
wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase. |
| >cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=151.32 Aligned_cols=167 Identities=14% Similarity=0.159 Sum_probs=132.3
Q ss_pred CCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCC--eEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHh
Q 003557 600 EDKFIFACFNQL--YKMDPEIFNTWCNILRRVPN--SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRR 675 (811)
Q Consensus 600 ~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~--~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 675 (811)
++.++|+++++. .|+.+.+++++.++.+..|+ .++.++|+|+. .+.+++.+++.+. .++|.|+|..+..+....
T Consensus 228 ~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~-~~~l~~~~~~~~~-~~~V~f~G~v~~~e~~~~ 305 (407)
T cd04946 228 DDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGPL-EDTLKELAESKPE-NISVNFTGELSNSEVYKL 305 (407)
T ss_pred CCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCchH-HHHHHHHHHhcCC-CceEEEecCCChHHHHHH
Confidence 355777777766 59999999999999998875 45567888876 7788888888787 689999999998888887
Q ss_pred cC--CCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhH--HHHHhcCCCCcccc--CCHHHHHHHHHHHhcC
Q 003557 676 SS--LADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAG--SLCLATGLGEEMIV--NSMKEYEERAVSLALD 748 (811)
Q Consensus 676 ~~--~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~--~~l~~~g~~~~~v~--~~~~~y~~~~~~l~~d 748 (811)
|. .+|+|+.|+.++| |++++|||++|+|||+ +++|+ .++.. |..+.++. +|++++++.+.++.+|
T Consensus 306 ~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIa-------s~vgg~~e~i~~-~~~G~l~~~~~~~~~la~~I~~ll~~ 377 (407)
T cd04946 306 YKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIA-------TNVGGTPEIVDN-GGNGLLLSKDPTPNELVSSLSKFIDN 377 (407)
T ss_pred HhhcCCCEEEeCCccccccHHHHHHHHcCCCEEe-------CCCCCcHHHhcC-CCcEEEeCCCCCHHHHHHHHHHHHhC
Confidence 75 4899999999988 9999999999999995 44441 12222 22231333 3789999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCChHHHHHHH
Q 003557 749 RQKLQALTNKLKSVRLTCPLFDTARWVKNL 778 (811)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (811)
++.+.+|+++.|+.. ...|+.+...+++
T Consensus 378 ~~~~~~m~~~ar~~~--~~~f~~~~~~~~~ 405 (407)
T cd04946 378 EEEYQTMREKAREKW--EENFNASKNYREF 405 (407)
T ss_pred HHHHHHHHHHHHHHH--HHHcCHHHhHHHh
Confidence 999999999999987 4469988876665
|
AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-13 Score=135.77 Aligned_cols=304 Identities=22% Similarity=0.228 Sum_probs=196.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHH
Q 003557 28 SNLGNLMKAQGLVQEAYSCYLEALRIQPTF----AIAWSNLAGLFMESGDLNRALQYYKEAVKL------KPTFPDAYLN 97 (811)
Q Consensus 28 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~ 97 (811)
..-|.-+++.|++...+.+|+.+++...++ ..+|..||.+|..+++|++|+++-..=+.+ .-......-+
T Consensus 21 alEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 21 ALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 345778889999999999999999987665 456788889999999999998876544332 1223446678
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCC-------ChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 003557 98 LGNVYKALGMPQEAIMCYQRAVQTRP-------NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALK 170 (811)
Q Consensus 98 la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 170 (811)
||+.+.-.|.|++|+.+..+-+.... ...+++++|.+|...|+.-.-..--+ ....+.++-
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee----~g~f~~ev~-------- 168 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEE----KGAFNAEVT-------- 168 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhh----cccccHHHH--------
Confidence 89999999999999988887766422 16688888888887775321100000 000000000
Q ss_pred HcCCHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC------CchHHHHHHHHHH
Q 003557 171 DVGRVDEAIQCYNQCLSLQPS------HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG------LSAPFNNLAVIYK 238 (811)
Q Consensus 171 ~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~ 238 (811)
..++.|.++|..-+++..+ ...++-++|+.|+-.|+++.|+..-+.-+.+... .-.++.++|.++.
T Consensus 169 --~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 169 --SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI 246 (639)
T ss_pred --HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh
Confidence 1123344444444333221 1235566677777777777776665555544322 1245667777777
Q ss_pred HcCCHHHHHHHHHHHHhc----CC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHH
Q 003557 239 QQGNYADAISCYNEVLRI----DP--LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP------TMAEAHANLASAYK 306 (811)
Q Consensus 239 ~~g~~~~A~~~~~~al~~----~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~ 306 (811)
-.|+++.|+++|++.+.+ .. ..+...+.+|..|.-..++++|+.++.+-+.+.. ....+++.||..+.
T Consensus 247 flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN 326 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 777777777777766543 22 2245677888888888888888888887776532 24568888999999
Q ss_pred hCCCHHHHHHHHHHHHhcC-----CC-ChHHHHHHHHHhhhcCCh
Q 003557 307 DSGHVEAAIKSYKQALLLR-----PD-FPEATCNLLHTLQCVCSW 345 (811)
Q Consensus 307 ~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~l~~~~~~~~~~ 345 (811)
..|..++|+.+.++.++.. +. ...+..|+.......|.-
T Consensus 327 alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 327 ALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQE 371 (639)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence 9999888888888777652 22 234556666666655553
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.6e-12 Score=144.94 Aligned_cols=243 Identities=12% Similarity=0.070 Sum_probs=160.7
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHH
Q 003557 53 IQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLA 132 (811)
Q Consensus 53 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la 132 (811)
.+|.+..++..++..+...+++++|+..++..++.+|+...+++.+|.++.+.+++.++..+ .++..
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~----------- 92 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS----------- 92 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-----------
Confidence 45677777777777777777888888888777777777777777777777777776655544 33332
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHH
Q 003557 133 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAA 212 (811)
Q Consensus 133 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 212 (811)
.....++ .+++++...+...+++..+++.+|.||-++|+.++|...|+++++.+|+++.+++++|..|... +.++|
T Consensus 93 --~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 --FSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred --cccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 2223344 4455555555556666667888888888888888888888888888888888888888888777 88888
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 003557 213 ASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 292 (811)
Q Consensus 213 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 292 (811)
++++.+++.. +...+++.++.+++++.+..+|.+.+.+..+-......-.+..
T Consensus 169 ~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~------------- 221 (906)
T PRK14720 169 ITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTR------------- 221 (906)
T ss_pred HHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccch-------------
Confidence 8888777654 5556678888888888888877776654433222221101111
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhh
Q 003557 293 TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340 (811)
Q Consensus 293 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 340 (811)
....+.-+-..|...+++++++.+++.+++.+|+|..+...++.++.
T Consensus 222 -~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 222 -LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred -hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 12334444455566666666666666666666666666666666555
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.5e-13 Score=123.34 Aligned_cols=125 Identities=15% Similarity=0.119 Sum_probs=105.9
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 003557 213 ASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 292 (811)
Q Consensus 213 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 292 (811)
..+++++++.+|++ +..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 45677777777764 556788888889999999999999988998899999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhh
Q 003557 293 TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340 (811)
Q Consensus 293 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 340 (811)
+++.+++++|.++...|++++|+..|+++++..|+++..+.+.+.+..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888877665544
|
|
| >PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.9e-14 Score=132.99 Aligned_cols=161 Identities=16% Similarity=0.207 Sum_probs=129.1
Q ss_pred cCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhh-cCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCCh
Q 003557 593 RSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRR-VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMK 669 (811)
Q Consensus 593 r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~-~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~ 669 (811)
|...+.+++.++|+.+++. .|+...+++++..+.++ .|+..|+++|.++. ...+...+...++ .++|.|.|..+.
T Consensus 6 ~~~~~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~-~~~~~~~~~~~~~-~~~i~~~~~~~~ 83 (172)
T PF00534_consen 6 REKLKIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEY-KKELKNLIEKLNL-KENIIFLGYVPD 83 (172)
T ss_dssp HHHTTT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCH-HHHHHHHHHHTTC-GTTEEEEESHSH
T ss_pred HHHcCCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccc-ccccccccccccc-cccccccccccc
Confidence 4456677788898888866 49999999999999886 99999999996654 6778889999999 689999998888
Q ss_pred HHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCcccc--CCHHHHHHHHHHHh
Q 003557 670 QEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLA 746 (811)
Q Consensus 670 ~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~--~~~~~y~~~~~~l~ 746 (811)
.+....|+.+||+|.|+.++| |++++|||++|+|||+.....+..-+.. +.+. ++. .+++++++.+.++.
T Consensus 84 ~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~------~~~g-~~~~~~~~~~l~~~i~~~l 156 (172)
T PF00534_consen 84 DELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIIND------GVNG-FLFDPNDIEELADAIEKLL 156 (172)
T ss_dssp HHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGT------TTSE-EEESTTSHHHHHHHHHHHH
T ss_pred cccccccccceeccccccccccccccccccccccceeeccccCCceeecc------ccce-EEeCCCCHHHHHHHHHHHH
Confidence 888899999999999988777 9999999999999997665444433321 3344 443 46799999999999
Q ss_pred cCHHHHHHHHHHHHhh
Q 003557 747 LDRQKLQALTNKLKSV 762 (811)
Q Consensus 747 ~d~~~~~~~~~~~~~~ 762 (811)
.|++.+..|+++.|++
T Consensus 157 ~~~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 157 NDPELRQKLGKNARER 172 (172)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCC
Confidence 9999999999988764
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B .... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.6e-13 Score=133.99 Aligned_cols=285 Identities=19% Similarity=0.174 Sum_probs=201.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhh----CC---ChhHHHhHH
Q 003557 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPD----AYLNLGNVYKALGMPQEAIMCYQRAVQT----RP---NAIAFGNLA 132 (811)
Q Consensus 64 la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~----~p---~~~~~~~la 132 (811)
-|.-+++.|+....+.+|+.+++...++.. +|..||++|..+++|++|+++-..-+.+ .. .+.+--+||
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 355678889999999999999988776543 6778888888889999988876543332 11 155666788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Q 003557 133 STYYERGQADMAILYYKQAIGCDP------RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW 206 (811)
Q Consensus 133 ~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 206 (811)
+++...|.+++|+.+..+-+.... ....+++++|.+|...|+.-.-..- -+....+.++-
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~p----ee~g~f~~ev~---------- 168 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAP----EEKGAFNAEVT---------- 168 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCCh----hhcccccHHHH----------
Confidence 888888888888887776653321 1244778888888777653211000 00000111110
Q ss_pred CChHHHHHHHHHHHhccCC------CchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHh
Q 003557 207 NMLPAAASYYKATLAVTTG------LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA------ADGLVNRGNTYKEI 274 (811)
Q Consensus 207 g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~ 274 (811)
..++.|.++|..-+++... ...++-+||..|+-.|+|+.|+..-+.-+++..+. -.++.++|.++.-+
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 1134455555555444322 24567889999999999999999988877664332 34899999999999
Q ss_pred CCHHHHHHHHHHHHhcC----C--CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC------CCChHHHHHHHHHhhhc
Q 003557 275 GRVTDAIQDYIRAITIR----P--TMAEAHANLASAYKDSGHVEAAIKSYKQALLLR------PDFPEATCNLLHTLQCV 342 (811)
Q Consensus 275 g~~~~A~~~~~~al~~~----p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~ 342 (811)
|+++.|+++|++.+.+. . ..+...+.||..|.-..++++|+.++.+-+.+. .....+.+.|+..+..+
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999999999887552 2 235678999999999999999999999877663 23456888999999999
Q ss_pred CChhhHhHHHHHHHHHHHHH
Q 003557 343 CSWEDRDRMFSEVEGIIRRQ 362 (811)
Q Consensus 343 ~~~~~a~~~~~~a~~l~~~~ 362 (811)
|..+.|....+...++-.+.
T Consensus 329 g~h~kAl~fae~hl~~s~ev 348 (639)
T KOG1130|consen 329 GEHRKALYFAELHLRSSLEV 348 (639)
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 99988887777666655443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-11 Score=116.50 Aligned_cols=185 Identities=22% Similarity=0.172 Sum_probs=163.9
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHH
Q 003557 154 CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL 233 (811)
Q Consensus 154 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l 233 (811)
..++....+-.+..+....|+.+-|..++++.....|++..+....|..+...|++++|+++|+..++.+|.+..++-..
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRK 126 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRK 126 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHH
Confidence 34555667777788888899999999999998888899999988899999999999999999999999999999888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC---C
Q 003557 234 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG---H 310 (811)
Q Consensus 234 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~ 310 (811)
..+...+|+.-+|++.+.+.++..+.+.++|..++.+|...|+|++|.-++++++=+.|.++-.+..+|.+++-.| +
T Consensus 127 lAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 127 LAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence 8888889999999999999999999999999999999999999999999999999999999999999999888776 6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 003557 311 VEAAIKSYKQALLLRPDFPEATCNLLHT 338 (811)
Q Consensus 311 ~~~A~~~~~~al~~~p~~~~~~~~l~~~ 338 (811)
++.|.++|.++++++|.+..+++.+..+
T Consensus 207 ~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 207 LELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 7889999999999999887777765443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-11 Score=139.51 Aligned_cols=266 Identities=12% Similarity=0.080 Sum_probs=178.5
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 003557 19 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNL 98 (811)
Q Consensus 19 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 98 (811)
.+|.+..++..++..+...+++++|++.++..++..|+....|+.+|.++.+.+++.++... .++...+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~-------- 95 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ-------- 95 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc--------
Confidence 35889999999999999999999999999999999999999999999999999997776655 44444333
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHH
Q 003557 99 GNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDE 177 (811)
Q Consensus 99 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 177 (811)
..++ .+.+++...+...++ ..+++.+|.+|-++|+.++|...|+++++.+|+++.+++++|..|... +.++
T Consensus 96 ------~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 96 ------NLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred ------ccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 3334 333333333333333 567777788888888888888888888888888888888888877777 7888
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHH--------------------HHHHHH
Q 003557 178 AIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFN--------------------NLAVIY 237 (811)
Q Consensus 178 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~--------------------~la~~~ 237 (811)
|++++.+++.. +...+++.++.++..+.+..+|.+...+. -+-..|
T Consensus 168 A~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 168 AITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY 233 (906)
T ss_pred HHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 88887777664 55556777777777777777666554422 223445
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 003557 238 KQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKS 317 (811)
Q Consensus 238 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 317 (811)
...++|++++.+++.+++.+|.+..+...++.+|.. .|.. ...++..+++. .+-..-.++..|+..
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~--kY~~-~~~~ee~l~~s-----------~l~~~~~~~~~~i~~ 299 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE--KYKD-HSLLEDYLKMS-----------DIGNNRKPVKDCIAD 299 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH--HccC-cchHHHHHHHh-----------ccccCCccHHHHHHH
Confidence 555666666666666666666666666666666652 2222 22233322221 000111345677777
Q ss_pred HHHHHhcCCCChH
Q 003557 318 YKQALLLRPDFPE 330 (811)
Q Consensus 318 ~~~al~~~p~~~~ 330 (811)
|++.+..++.+--
T Consensus 300 fek~i~f~~G~yv 312 (906)
T PRK14720 300 FEKNIVFDTGNFV 312 (906)
T ss_pred HHHHeeecCCCEE
Confidence 7777777666543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=119.71 Aligned_cols=123 Identities=20% Similarity=0.186 Sum_probs=65.2
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC
Q 003557 146 LYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG 225 (811)
Q Consensus 146 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 225 (811)
..++++++.+|++ +..+|.++...|++++|...|++++..+|.+..++..+|.++...|++++|+..|++++..+|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3455555555543 3344555555555555555555555555555555555555555555555555555555555555
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 003557 226 LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY 271 (811)
Q Consensus 226 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 271 (811)
++.+++++|.++...|++++|+..|+++++..|+++..+..++.+.
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 5555555555555555555555555555555555555554444443
|
|
| >cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-12 Score=139.03 Aligned_cols=142 Identities=15% Similarity=0.147 Sum_probs=104.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCC
Q 003557 611 LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA 690 (811)
Q Consensus 611 ~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g 690 (811)
..|+.+.+++++.++ | .+|+|+|.|+. .+.+++ +. .++|.|.|..+.++....+..+|++|.|+. +|
T Consensus 206 ~~K~~~~li~a~~~~----~-~~l~ivG~g~~-~~~l~~-----~~-~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~-e~ 272 (351)
T cd03804 206 PYKRIDLAIEAFNKL----G-KRLVVIGDGPE-LDRLRA-----KA-GPNVTFLGRVSDEELRDLYARARAFLFPAE-ED 272 (351)
T ss_pred cccChHHHHHHHHHC----C-CcEEEEECChh-HHHHHh-----hc-CCCEEEecCCCHHHHHHHHHhCCEEEECCc-CC
Confidence 469999999988654 5 78999998875 555554 55 589999999999999999999999999988 66
Q ss_pred -hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccc-cCCHHHHHHHHHHHhcCH-HHHHHHHHHHHhhcccCC
Q 003557 691 -HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI-VNSMKEYEERAVSLALDR-QKLQALTNKLKSVRLTCP 767 (811)
Q Consensus 691 -~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v-~~~~~~y~~~~~~l~~d~-~~~~~~~~~~~~~~~~~~ 767 (811)
|++++|||++|+|||+........-+. . |-...++ .++++++++.+..+.+|+ ..++++++..+
T Consensus 273 ~g~~~~Eama~G~Pvi~~~~~~~~e~i~-----~-~~~G~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~------- 339 (351)
T cd03804 273 FGIVPVEAMASGTPVIAYGKGGALETVI-----D-GVTGILFEEQTVESLAAAVERFEKNEDFDPQAIRAHAE------- 339 (351)
T ss_pred CCchHHHHHHcCCCEEEeCCCCCcceee-----C-CCCEEEeCCCCHHHHHHHHHHHHhCcccCHHHHHHHHH-------
Confidence 999999999999999654322222111 1 2223123 357899999999999998 44444444332
Q ss_pred CCChHHHHHHH
Q 003557 768 LFDTARWVKNL 778 (811)
Q Consensus 768 ~~~~~~~~~~~ 778 (811)
.|+.++|.+++
T Consensus 340 ~~~~~~~~~~~ 350 (351)
T cd03804 340 RFSESRFREKI 350 (351)
T ss_pred hcCHHHHHHHh
Confidence 28888888775
|
wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.9e-12 Score=119.93 Aligned_cols=172 Identities=15% Similarity=0.162 Sum_probs=132.6
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 003557 178 AIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID 257 (811)
Q Consensus 178 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (811)
+...+-+....+|++..+ .+++..+...|+-+.+..+..+.....|.+......+|...+..|++.+|+..+.++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 555555556667777777 7777777777777777777777777777777777777777778888888888888888888
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 003557 258 PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLH 337 (811)
Q Consensus 258 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 337 (811)
|++.++|..+|.+|.+.|++++|...|.+++++.|+++.+..++|..|.-.|+++.|..++..+....+.+..+..|++.
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl 210 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL 210 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888887777777777788887
Q ss_pred HhhhcCChhhHhH
Q 003557 338 TLQCVCSWEDRDR 350 (811)
Q Consensus 338 ~~~~~~~~~~a~~ 350 (811)
+...+|++.+|..
T Consensus 211 ~~~~~g~~~~A~~ 223 (257)
T COG5010 211 VVGLQGDFREAED 223 (257)
T ss_pred HHhhcCChHHHHh
Confidence 7777777665543
|
|
| >PHA01633 putative glycosyl transferase group 1 | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.7e-13 Score=137.79 Aligned_cols=171 Identities=12% Similarity=0.130 Sum_probs=117.5
Q ss_pred CcCCCCCC-CCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCC----eEEEeecCChhhHHHHHHHHHHcCCCCCceEEc
Q 003557 592 KRSDYGLP-EDKFIFACFNQL--YKMDPEIFNTWCNILRRVPN----SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFT 664 (811)
Q Consensus 592 ~r~~~gl~-~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~ 664 (811)
.|++++.+ ++.++|+.++|+ .|+.+.++++|.++.++.|+ .+|+++|.+ .+.+.++ +++|.|.
T Consensus 137 ~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~---------~~~~l~l-~~~V~f~ 206 (335)
T PHA01633 137 LKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK---------QFTQLEV-PANVHFV 206 (335)
T ss_pred HHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH---------HHHHcCC-CCcEEEE
Confidence 34444443 356788888876 59999999999999988885 477776531 2356788 6899998
Q ss_pred ---CCCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhH--HHH-H----------hcCCC
Q 003557 665 ---DVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAG--SLC-L----------ATGLG 727 (811)
Q Consensus 665 ---~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~--~~l-~----------~~g~~ 727 (811)
|..+..+....|+.+|+||.|+.++| |++++|||++|+|||+...+.+..-+|. ++| . .-|.
T Consensus 207 g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~- 285 (335)
T PHA01633 207 AEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQ- 285 (335)
T ss_pred ecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCc-
Confidence 45567888899999999999998999 9999999999999997755544443331 011 0 0011
Q ss_pred Cccc-cCCHHHHHHHHHHHh--cCHHHHHHHHHHHHhhcccCCCCChHHHHHHHH
Q 003557 728 EEMI-VNSMKEYEERAVSLA--LDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 779 (811)
Q Consensus 728 ~~~v-~~~~~~y~~~~~~l~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 779 (811)
.+++ ..|++++++.+.++. .|++.+ +..+++... .||.+...++++
T Consensus 286 g~~~~~~d~~~la~ai~~~~~~~~~~~~---~~~~~~~a~---~f~~~~~~~~~~ 334 (335)
T PHA01633 286 KWKIHKFQIEDMANAIILAFELQDREER---SMKLKELAK---KYDIRNLYTRFL 334 (335)
T ss_pred eeeecCCCHHHHHHHHHHHHhccChhhh---hHHHHHHHH---hcCHHHHHHHhh
Confidence 1012 247888888777663 344443 444455443 399988887765
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4e-12 Score=122.78 Aligned_cols=125 Identities=15% Similarity=0.135 Sum_probs=106.2
Q ss_pred cCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhCC--HHHHHH
Q 003557 206 WNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY-KEIGR--VTDAIQ 282 (811)
Q Consensus 206 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 282 (811)
.++.++++..++++++.+|++...|..+|.+|...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 566678888888888888888888888888888888888888888888888888888888888874 66676 588999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChH
Q 003557 283 DYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 330 (811)
Q Consensus 283 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 330 (811)
.++++++.+|++..+++.+|..+.+.|++++|+.+|++++++.|.+.+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999988889999999999999999999999999888877543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-12 Score=137.28 Aligned_cols=220 Identities=18% Similarity=0.207 Sum_probs=196.9
Q ss_pred hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 003557 125 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 204 (811)
Q Consensus 125 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 204 (811)
......++..+...|-..+|+..+++. ..|-....||...|+..+|..+..+-++ .|+++..|..+|.+..
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLH 468 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhcc
Confidence 345567899999999999999999984 4677888999999999999999999998 6777889999998888
Q ss_pred HcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 003557 205 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 284 (811)
Q Consensus 205 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 284 (811)
..--+++|.++.+... ..+...+|......++|+++.++++..++++|-....|+.+|.+..+.++++.|.++|
T Consensus 469 d~s~yEkawElsn~~s------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYIS------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred ChHHHHHHHHHhhhhh------HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 8777888887776543 3355666777777899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHH
Q 003557 285 IRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGII 359 (811)
Q Consensus 285 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l~ 359 (811)
..++.++|++.++|++++..|.+.|+..+|...++++++.+-++...|-|.+.+....|.|++|.+.+.+...+-
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999988887776543
|
|
| >PRK13609 diacylglycerol glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.8e-12 Score=138.58 Aligned_cols=176 Identities=13% Similarity=0.064 Sum_probs=121.2
Q ss_pred CcCCCCCCCCcE-EEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeec-CChhhHHHHHHHHHHcCCCCCceEEcCCC
Q 003557 592 KRSDYGLPEDKF-IFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLR-FPAAGEMRLRAYAVAQGVQPDQIIFTDVA 667 (811)
Q Consensus 592 ~r~~~gl~~~~~-~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~-~~~~~~~~l~~~~~~~gi~~~rv~~~~~~ 667 (811)
.|.++|++++.. ++...++. .|....+++.+. +.|+.++++++ .++..++.+++.+.+.+ ++|+|+|..
T Consensus 192 ~~~~~~l~~~~~~il~~~G~~~~~k~~~~li~~l~----~~~~~~~viv~G~~~~~~~~l~~~~~~~~---~~v~~~g~~ 264 (380)
T PRK13609 192 IYNKYQLCPNKKILLIMAGAHGVLGNVKELCQSLM----SVPDLQVVVVCGKNEALKQSLEDLQETNP---DALKVFGYV 264 (380)
T ss_pred HHHHcCCCCCCcEEEEEcCCCCCCcCHHHHHHHHh----hCCCcEEEEEeCCCHHHHHHHHHHHhcCC---CcEEEEech
Confidence 577899987643 33333433 366666666543 34888887764 34333567777766554 689999976
Q ss_pred ChHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 003557 668 MKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL 747 (811)
Q Consensus 668 ~~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~~~~~y~~~~~~l~~ 747 (811)
+ +...+|..+|+++. .+||.|++|||++|+|||+.....-.....+..+...|. . ++..+++++.+.+.++.+
T Consensus 265 ~--~~~~l~~~aD~~v~---~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~-~-~~~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 265 E--NIDELFRVTSCMIT---KPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGA-A-VVIRDDEEVFAKTEALLQ 337 (380)
T ss_pred h--hHHHHHHhccEEEe---CCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCc-E-EEECCHHHHHHHHHHHHC
Confidence 4 34456788999983 457899999999999999753111111222234444455 2 456799999999999999
Q ss_pred CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 003557 748 DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 784 (811)
Q Consensus 748 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 784 (811)
|++.+++|+++.++.. ..++.+.+++.+++.+..
T Consensus 338 ~~~~~~~m~~~~~~~~---~~~s~~~i~~~i~~~~~~ 371 (380)
T PRK13609 338 DDMKLLQMKEAMKSLY---LPEPADHIVDDILAENHV 371 (380)
T ss_pred CHHHHHHHHHHHHHhC---CCchHHHHHHHHHHhhhh
Confidence 9999999999887743 237889999888877653
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-11 Score=117.45 Aligned_cols=179 Identities=20% Similarity=0.160 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 003557 143 MAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV 222 (811)
Q Consensus 143 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 222 (811)
.+...+-+....+|++..+ .+++..+...|+-+.+..+..++...+|++......+|...+..|++.+|+..+.++...
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 3556666667778888888 888889999999999999998888888888888888999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 003557 223 TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302 (811)
Q Consensus 223 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 302 (811)
.|++.+.|+.+|.+|.+.|++++|...|.+++++.|+++.+..++|..+.-.|+++.|..++..+....+.+..+..+++
T Consensus 130 ~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLA 209 (257)
T COG5010 130 APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLA 209 (257)
T ss_pred CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888888999999
Q ss_pred HHHHhCCCHHHHHHHHHHHH
Q 003557 303 SAYKDSGHVEAAIKSYKQAL 322 (811)
Q Consensus 303 ~~~~~~g~~~~A~~~~~~al 322 (811)
.+....|++.+|...-.+-+
T Consensus 210 l~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 210 LVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHhhcCChHHHHhhccccc
Confidence 99999999999987765543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3e-10 Score=138.63 Aligned_cols=332 Identities=16% Similarity=0.031 Sum_probs=146.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------CHHHHHHH
Q 003557 29 NLGNLMKAQGLVQEAYSCYLEALR-IQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT---------FPDAYLNL 98 (811)
Q Consensus 29 ~l~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~l 98 (811)
..+..+...|++..+...+..+-. ....++......+.++...|++++|...+.++....+. .......+
T Consensus 379 ~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 458 (903)
T PRK04841 379 QHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALR 458 (903)
T ss_pred HhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHH
Confidence 334444455555544444433200 01112223334444555555555555555554432111 01223334
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCC------hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHH
Q 003557 99 GNVYKALGMPQEAIMCYQRAVQTRPN------AIAFGNLASTYYERGQADMAILYYKQAIGCDPR------FLEAYNNLG 166 (811)
Q Consensus 99 a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la 166 (811)
+.++...|++++|...++++++..+. ..+...++.++...|++++|...+++++..... ...++..++
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 45555555555555555555543222 123344555555555555555555555532111 012334455
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCC-----C---ChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC-----CchHHHHH
Q 003557 167 NALKDVGRVDEAIQCYNQCLSLQP-----S---HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG-----LSAPFNNL 233 (811)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~al~~~p-----~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-----~~~~~~~l 233 (811)
.++...|++++|...+++++.... . ....+..++.++...|++++|...+.+++..... ....+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 555555555555555555544311 0 1122334455555555555555555555443211 12223345
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHH----HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcH----HHHHHHH
Q 003557 234 AVIYKQQGNYADAISCYNEVLRIDPLA---ADGL----VNRGNTYKEIGRVTDAIQDYIRAITIRPTMA----EAHANLA 302 (811)
Q Consensus 234 a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la 302 (811)
+.++...|++++|...+.++....... .... ......+...|+.+.|..++.......+... ..+..++
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 555555555555555555554331110 0000 0112233334555555555544433221111 1133455
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCC------CChHHHHHHHHHhhhcCChhhHhHHHHHHHHHHH
Q 003557 303 SAYKDSGHVEAAIKSYKQALLLRP------DFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIR 360 (811)
Q Consensus 303 ~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l~~ 360 (811)
.++...|++++|...++++++... ....+...++..+...|+.++|...+.++.++..
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 555555555555555555554311 1122344445555555555555555555555443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-10 Score=139.29 Aligned_cols=326 Identities=16% Similarity=0.049 Sum_probs=237.7
Q ss_pred CCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcC
Q 003557 3 KGRLNEAAQCCRQALA-LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT---------FAIAWSNLAGLFMESG 72 (811)
Q Consensus 3 ~g~~~~A~~~~~~~l~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g 72 (811)
.|++..+...++.+-. ....++......+.++...|++++|...+.++....+. .......++.++...|
T Consensus 387 ~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 466 (903)
T PRK04841 387 QGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDG 466 (903)
T ss_pred cCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCC
Confidence 3455555555444310 11123344566788888999999999999988664221 1345556778888999
Q ss_pred CHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------hhHHHhHHHHHHHcCC
Q 003557 73 DLNRALQYYKEAVKLKPTFP-----DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-------AIAFGNLASTYYERGQ 140 (811)
Q Consensus 73 ~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~la~~~~~~g~ 140 (811)
++++|...++++++..+... .+...+|.++...|++++|...+++++..... ...+..++.++...|+
T Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~ 546 (903)
T PRK04841 467 DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF 546 (903)
T ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC
Confidence 99999999999988544322 25577888999999999999999999875321 3466788999999999
Q ss_pred HHHHHHHHHHHHHcCC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHcC
Q 003557 141 ADMAILYYKQAIGCDP--------RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS-----HPQALTNLGNIYMEWN 207 (811)
Q Consensus 141 ~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g 207 (811)
+++|...+++++.... .....+..++.++...|++++|...+.+++..... ....+..++.++...|
T Consensus 547 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G 626 (903)
T PRK04841 547 LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARG 626 (903)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcC
Confidence 9999999999886421 12234567888899999999999999999875322 2345667889999999
Q ss_pred ChHHHHHHHHHHHhccCCCc---hHHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHhCC
Q 003557 208 MLPAAASYYKATLAVTTGLS---APFN----NLAVIYKQQGNYADAISCYNEVLRIDPLAA----DGLVNRGNTYKEIGR 276 (811)
Q Consensus 208 ~~~~A~~~~~~~l~~~~~~~---~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~ 276 (811)
++++|...+.++........ .... .....+...|+.+.|...+.......+... ..+..++.++...|+
T Consensus 627 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 706 (903)
T PRK04841 627 DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQ 706 (903)
T ss_pred CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCC
Confidence 99999999999876533221 1111 122445568899999999877665332222 125678999999999
Q ss_pred HHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Q 003557 277 VTDAIQDYIRAITIR------PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 328 (811)
Q Consensus 277 ~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 328 (811)
+++|...+++++... .....++..+|.++...|+.++|...+.+++++....
T Consensus 707 ~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 707 FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 999999999998762 1234578889999999999999999999999887554
|
|
| >PLN02605 monogalactosyldiacylglycerol synthase | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.2e-12 Score=138.74 Aligned_cols=175 Identities=14% Similarity=0.071 Sum_probs=122.3
Q ss_pred CCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHh----hcCCeE-EEeecCChhhHHHHHHHHHHcCCCCCceEE
Q 003557 591 PKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILR----RVPNSA-LWLLRFPAAGEMRLRAYAVAQGVQPDQIIF 663 (811)
Q Consensus 591 ~~r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~----~~p~~~-l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~ 663 (811)
..|+++|++++.++++.+++. .|....+++.+..++. ..|+.+ +++.|.++...+.+++ ... .++|.|
T Consensus 195 ~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~~~~~L~~----~~~-~~~v~~ 269 (382)
T PLN02605 195 ELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNKKLQSKLES----RDW-KIPVKV 269 (382)
T ss_pred HHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCHHHHHHHHh----hcc-cCCeEE
Confidence 478899999888888877764 5788888888877652 245554 5666765432344433 333 357999
Q ss_pred cCCCChHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccccCCHHHHHHHHH
Q 003557 664 TDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAV 743 (811)
Q Consensus 664 ~~~~~~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~~~~~y~~~~~ 743 (811)
.|+.+ +...+|+.+|+++.+ +||.|++|||++|+|||+.+-.......+...+...|.. +...|++++.+.+.
T Consensus 270 ~G~~~--~~~~l~~aaDv~V~~---~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g--~~~~~~~~la~~i~ 342 (382)
T PLN02605 270 RGFVT--NMEEWMGACDCIITK---AGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGFG--AFSESPKEIARIVA 342 (382)
T ss_pred Eeccc--cHHHHHHhCCEEEEC---CCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCce--eecCCHHHHHHHHH
Confidence 99775 455667899999964 378899999999999997652211222334445555663 34589999999999
Q ss_pred HHhcC-HHHHHHHHHHHHhhcccCCCCChHHHHHHHHH
Q 003557 744 SLALD-RQKLQALTNKLKSVRLTCPLFDTARWVKNLER 780 (811)
Q Consensus 744 ~l~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 780 (811)
+|..| ++.+++|++..++... -...+.+++.+.+
T Consensus 343 ~ll~~~~~~~~~m~~~~~~~~~---~~a~~~i~~~l~~ 377 (382)
T PLN02605 343 EWFGDKSDELEAMSENALKLAR---PEAVFDIVHDLHE 377 (382)
T ss_pred HHHcCCHHHHHHHHHHHHHhcC---CchHHHHHHHHHH
Confidence 99988 9999999999888652 2455666665543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-10 Score=109.17 Aligned_cols=184 Identities=21% Similarity=0.140 Sum_probs=130.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 003557 89 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN 167 (811)
Q Consensus 89 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 167 (811)
++....+-....+....|+.+-|..++++.....|+ ..+....|..+...|++++|+++|+..++.+|.+..++....-
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlA 128 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLA 128 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHH
Confidence 334445555666666677777777777777666666 5555566667777777777777777777777777767766666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcC---CHH
Q 003557 168 ALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQG---NYA 244 (811)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g---~~~ 244 (811)
+...+|+.-+|++.+.+.++.++.|.++|..++.+|...|++++|.-++++++-.+|.++..+..+|.+++-+| +++
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 67777777777777777777777777777777777777777777777777777777777777777777776655 456
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003557 245 DAISCYNEVLRIDPLAADGLVNRGNTYK 272 (811)
Q Consensus 245 ~A~~~~~~al~~~p~~~~~~~~la~~~~ 272 (811)
-|.++|.++++++|.+..+++.+-.+..
T Consensus 209 ~arkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 209 LARKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 6777888888877766666665544433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-12 Score=130.40 Aligned_cols=231 Identities=17% Similarity=0.096 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHH
Q 003557 94 AYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCD--PRFLEAYNNLGNALKD 171 (811)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~ 171 (811)
....+.+++..+|+++..+.-.... ..|...+...++..+...++.+.++..+++.+... +.+.......|.++..
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~ei~~~--~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~ 114 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLSEIKKS--SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFH 114 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHS-TT--SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCChhHHHHHhccC--CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 3444555555555555444332221 12333344444444433334444444444433211 1233344445566666
Q ss_pred cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcC--CHHHHHHH
Q 003557 172 VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQG--NYADAISC 249 (811)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g--~~~~A~~~ 249 (811)
.|++++|++.+.+. ++.+.......++...++++.|.+.++.+.+.+.+...+....+++....| ++.+|...
T Consensus 115 ~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~ 189 (290)
T PF04733_consen 115 EGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYI 189 (290)
T ss_dssp CCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred cCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 67777776666542 445666666677777777777777777776665554444444444554444 58888888
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCH-HHHHHHHHHHHhcCCCC
Q 003557 250 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHV-EAAIKSYKQALLLRPDF 328 (811)
Q Consensus 250 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~ 328 (811)
|++..+..+.++..++.++.++..+|++++|.+.++++++.+|++++++.+++.+....|+. +.+.+++.+....+|++
T Consensus 190 f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 190 FEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 88887777778888888899999999999999999999888899999999998888888887 66777888888888887
Q ss_pred hHH
Q 003557 329 PEA 331 (811)
Q Consensus 329 ~~~ 331 (811)
+-.
T Consensus 270 ~~~ 272 (290)
T PF04733_consen 270 PLV 272 (290)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.8e-12 Score=136.63 Aligned_cols=319 Identities=14% Similarity=0.109 Sum_probs=183.4
Q ss_pred ceEeeecCCCCCChhHhhHHHHhcccCCCCeEEEEEecCCCCChHHHHHHHhccCceEECC--CC---C-----------
Q 003557 426 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVS--AM---S----------- 489 (811)
Q Consensus 426 lrvg~~s~~~~~h~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~----------- 489 (811)
+||-+++...+-|- +....+.+.+.+.++||++.+..... ..+.++..+..++.++ +. +
T Consensus 2 ~~i~i~~~g~gG~~--~~~~~la~~L~~~g~ev~vv~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (357)
T PRK00726 2 KKILLAGGGTGGHV--FPALALAEELKKRGWEVLYLGTARGM---EARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKL 76 (357)
T ss_pred cEEEEEcCcchHhh--hHHHHHHHHHHhCCCEEEEEECCCch---hhhccccCCCcEEEEeccCcCCCChHHHHHHHHHH
Confidence 35666666555432 34445566666667898887753311 1223333344454443 11 1
Q ss_pred ---HHHHHHHHHhCCCeEEEeCCCCCCCcchhh---hhcC--CCceEEeccc-cCCCCCCCcccEEEecCccCCcCCC--
Q 003557 490 ---SDMIAKLINEDKIQILINLNGYTKGARNEI---FAMQ--PAPIQVSYMG-FPGTTGASYIDYLVTDEFVSPLRYA-- 558 (811)
Q Consensus 490 ---~~~~~~~i~~~~~dilv~~~~~~~~~~~~~---~~~r--~Apvq~~~~g-~~~t~g~~~~d~~~~d~~~~p~~~~-- 558 (811)
...+.+.|++.++||+ |+++....+ ++.+ ..|+.++-.. .++ ....+-|..+|.+++.....
T Consensus 77 ~~~~~~~~~~ik~~~pDvv-----~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~--~~~r~~~~~~d~ii~~~~~~~~ 149 (357)
T PRK00726 77 LKGVLQARKILKRFKPDVV-----VGFGGYVSGPGGLAARLLGIPLVIHEQNAVPG--LANKLLARFAKKVATAFPGAFP 149 (357)
T ss_pred HHHHHHHHHHHHhcCCCEE-----EECCCcchhHHHHHHHHcCCCEEEEcCCCCcc--HHHHHHHHHhchheECchhhhh
Confidence 1345778899999999 555432222 2222 2466443111 111 01111222344443332211
Q ss_pred CCCccceEEcCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCCC--CCCHHHH-HHHHHHHhhcCCeEEE
Q 003557 559 HIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLY--KMDPEIF-NTWCNILRRVPNSALW 635 (811)
Q Consensus 559 ~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~--K~~~~~~-~~~~~il~~~p~~~l~ 635 (811)
.....++..+|+..... ...+ ...+.+++++++.++++.+++.. |....++ +++.++.+. | .+++
T Consensus 150 ~~~~~~i~vi~n~v~~~--------~~~~--~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~-~-~~~~ 217 (357)
T PRK00726 150 EFFKPKAVVTGNPVREE--------ILAL--AAPPARLAGREGKPTLLVVGGSQGARVLNEAVPEALALLPEA-L-QVIH 217 (357)
T ss_pred ccCCCCEEEECCCCChH--------hhcc--cchhhhccCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhhC-c-EEEE
Confidence 01123444444432211 0011 12344677877777777776543 5444444 777776544 5 4567
Q ss_pred eecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccc--
Q 003557 636 LLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMA-- 713 (811)
Q Consensus 636 l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~-- 713 (811)
++|.|+ .+.+.+... .|+. |.|.|.. .+...++..+|+++-+ +|++|++|||++|+|||+.+.....
T Consensus 218 ~~G~g~--~~~~~~~~~-~~~~---v~~~g~~--~~~~~~~~~~d~~i~~---~g~~~~~Ea~~~g~Pvv~~~~~~~~~~ 286 (357)
T PRK00726 218 QTGKGD--LEEVRAAYA-AGIN---AEVVPFI--DDMAAAYAAADLVICR---AGASTVAELAAAGLPAILVPLPHAADD 286 (357)
T ss_pred EcCCCc--HHHHHHHhh-cCCc---EEEeehH--hhHHHHHHhCCEEEEC---CCHHHHHHHHHhCCCEEEecCCCCCcC
Confidence 778875 355555556 7772 9999976 4556667889999954 3679999999999999987632111
Q ss_pred -cchhHHHHHhcCCCCcccc-CC--HHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 003557 714 -TRVAGSLCLATGLGEEMIV-NS--MKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 783 (811)
Q Consensus 714 -~r~~~~~l~~~g~~~~~v~-~~--~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 783 (811)
....+..+...|..- ++. .+ ++++.+.+.++.+|++.+++|++..++.. .-++.+++++.+++..+
T Consensus 287 ~~~~~~~~i~~~~~g~-~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 287 HQTANARALVDAGAAL-LIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALG---KPDAAERLADLIEELAR 356 (357)
T ss_pred cHHHHHHHHHHCCCEE-EEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcC---CcCHHHHHHHHHHHHhh
Confidence 111234555556643 443 34 89999999999999999999999988764 34888888887776543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-11 Score=119.82 Aligned_cols=123 Identities=15% Similarity=0.197 Sum_probs=72.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHH-HHcCC--HHHHHH
Q 003557 172 VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIY-KQQGN--YADAIS 248 (811)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~-~~~g~--~~~A~~ 248 (811)
.++.++++..++++++.+|++.+.|..+|.+|...|++++|+..|+++++..|++...+..+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 344455555555555555555555555555555555555555555555555555555555555543 44444 366666
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 003557 249 CYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM 294 (811)
Q Consensus 249 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 294 (811)
.++++++.+|++..++..+|..+.+.|++++|+..|+++++..|.+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 6666666666666666666666666666666666666666665543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-10 Score=111.73 Aligned_cols=281 Identities=17% Similarity=0.123 Sum_probs=160.1
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003557 35 KAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMC 114 (811)
Q Consensus 35 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 114 (811)
.+..+|..|++++..-.+.+|.+-..+..+|.||+...++..|..+|++.-...|......+..+..+++.+.+..|+.+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 44455555665555555555555555555666666666666666666665555555555555555555556666655555
Q ss_pred HHHHHhhCCC--hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003557 115 YQRAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 192 (811)
Q Consensus 115 ~~~al~~~p~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 192 (811)
...+... ++ ......-+.+.+..+++..+....++.-. .+......+.|.+.++.|++++|.+-|+.+++...-+
T Consensus 101 ~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 101 AFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 5444332 22 33333334444445555444444333211 1334455555555566666666666666666555555
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcc----CC-------------------------CchHHHHHHHHHHHcCCH
Q 003557 193 PQALTNLGNIYMEWNMLPAAASYYKATLAVT----TG-------------------------LSAPFNNLAVIYKQQGNY 243 (811)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~-------------------------~~~~~~~la~~~~~~g~~ 243 (811)
+-.-++++.+.++.+++..|+++..+.++.. |. -.++++..+.++++.+++
T Consensus 178 pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~ 257 (459)
T KOG4340|consen 178 PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNY 257 (459)
T ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccH
Confidence 5555556666666666666655555554331 11 023355567778888888
Q ss_pred HHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHH
Q 003557 244 ADAISCYNEVLRID--PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYK 319 (811)
Q Consensus 244 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 319 (811)
+.|.+.+..+--.. .-++..+.+++..- ..+++.+...-++-.++++|--.+.+.++-.+|++..-++.|..++-
T Consensus 258 eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 258 EAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 88877665432211 12345666665443 24566667777777788888777888888888888887777766553
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-11 Score=128.83 Aligned_cols=221 Identities=19% Similarity=0.286 Sum_probs=173.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 003557 23 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVY 102 (811)
Q Consensus 23 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 102 (811)
.......++..+...|-..+|+..|++. ..|-....||...|+..+|..+..+-++ .|+++..|..+|.+.
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVL 467 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhc
Confidence 4445567788888888888888888774 5677778888888888888888888888 666677777777776
Q ss_pred HHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 003557 103 KALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182 (811)
Q Consensus 103 ~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 182 (811)
....-|++|.++.+... ..+...+|......++++++.+.++..++++|-....|+.+|.+..+.++++.|.+.|
T Consensus 468 ~d~s~yEkawElsn~~s-----arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYIS-----ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred cChHHHHHHHHHhhhhh-----HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 66655556555554332 3355666666667788888888888888888888888888888888888888888888
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 003557 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID 257 (811)
Q Consensus 183 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (811)
..++...|++.++|++++..|...++-.+|...++++++.+-++...|.+...+..+.|.+++|++.|.+.+.+.
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 888888888888888888888888888888888888888887788888888888888888888888888877653
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-09 Score=114.23 Aligned_cols=270 Identities=14% Similarity=0.221 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----hhHHHhHH-----HHHHHcC-------------CHHHHHHHHHHH
Q 003557 94 AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIAFGNLA-----STYYERG-------------QADMAILYYKQA 151 (811)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~la-----~~~~~~g-------------~~~~A~~~~~~a 151 (811)
.|..||..|.+.|.+++|...|+++++.--. ..++...+ .+...++ +.+-....|+..
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~l 329 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESL 329 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHH
Confidence 6788888889999999999988888875321 11111110 0001111 122233334433
Q ss_pred H------------HcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCC-----hHHHHHHHHHHHHcCChHHHH
Q 003557 152 I------------GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS-LQPSH-----PQALTNLGNIYMEWNMLPAAA 213 (811)
Q Consensus 152 l------------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~-----~~~~~~la~~~~~~g~~~~A~ 213 (811)
+ ..+|++...|.....+ ..|+..+-+..|.++++ .+|.. ...|..+|..|...|+.+.|.
T Consensus 330 m~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 330 MNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred HhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 2 3466666666554443 45677778888887775 34442 257888888888888888888
Q ss_pred HHHHHHHhccCC----CchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------------------CCHHHHHHHHHHH
Q 003557 214 SYYKATLAVTTG----LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP------------------LAADGLVNRGNTY 271 (811)
Q Consensus 214 ~~~~~~l~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------------------~~~~~~~~la~~~ 271 (811)
..|+++.+..-. -..+|...|..-.+..+++.|+++++.+..... .+..+|..++...
T Consensus 408 vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle 487 (835)
T KOG2047|consen 408 VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE 487 (835)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH
Confidence 888888876532 245677778888888888888888888765421 1234677777777
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCChHHHHHHHHHhhhcCChhhHh
Q 003557 272 KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR--PDFPEATCNLLHTLQCVCSWEDRD 349 (811)
Q Consensus 272 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~a~ 349 (811)
...|-++.....|++.+.+.--.|....+.|..+....-+++|.+.|++-+.+. |+-.+.|...+...... +. .
T Consensus 488 Es~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r--yg--g 563 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR--YG--G 563 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH--hc--C
Confidence 788888888888888888877777788888888888888888888888888775 34445555544433221 11 1
Q ss_pred HHHHHHHHHHHHHhcccCCCC
Q 003557 350 RMFSEVEGIIRRQVNMSVLPS 370 (811)
Q Consensus 350 ~~~~~a~~l~~~~~~~~~~p~ 370 (811)
...+.+..+|++.++ ++.|.
T Consensus 564 ~klEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 564 TKLERARDLFEQALD-GCPPE 583 (835)
T ss_pred CCHHHHHHHHHHHHh-cCCHH
Confidence 234556666666665 44443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.9e-10 Score=109.05 Aligned_cols=283 Identities=14% Similarity=0.061 Sum_probs=225.2
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 003557 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 81 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 81 (811)
+..+|++|++++..-.+.+|.+...+..+|.+|+...+|..|..+|++.-...|.........+..+++.+.+..|+...
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Q 003557 82 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEA 161 (811)
Q Consensus 82 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 161 (811)
..+.....-.......-+.+.+..+++..+....++.-. ..+.....+.|-+.++.|+++.|++-|+.+++...-++-.
T Consensus 102 ~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~-en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll 180 (459)
T KOG4340|consen 102 FLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS-ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL 180 (459)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC-CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh
Confidence 877654222233455556667777888877776665421 1127788899999999999999999999999998888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC----------------C---------hHHHHHHHHHHHHcCChHHH
Q 003557 162 YNNLGNALKDVGRVDEAIQCYNQCLSL----QPS----------------H---------PQALTNLGNIYMEWNMLPAA 212 (811)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~----~p~----------------~---------~~~~~~la~~~~~~g~~~~A 212 (811)
-++++.++++.|+++.|+++..++++. .|. + .++++..+.++++.++++.|
T Consensus 181 AYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA 260 (459)
T KOG4340|consen 181 AYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAA 260 (459)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHH
Confidence 899999999999999999998888764 232 1 13556667788899999999
Q ss_pred HHHHHHHHhccC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003557 213 ASYYKATLAVTT--GLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 286 (811)
Q Consensus 213 ~~~~~~~l~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 286 (811)
.+.+..+--... -++..+.+++..- ..+++.+...-++-.++++|--.+.+.++-.+|++..-++-|...+.+
T Consensus 261 ~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 261 QEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 887765443222 2455566666543 345677777778888889998888999999999999888888766543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.8e-11 Score=134.77 Aligned_cols=152 Identities=13% Similarity=0.074 Sum_probs=135.4
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCc
Q 003557 148 YKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS 227 (811)
Q Consensus 148 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 227 (811)
........|.+.+++.+||.+....|++++|...++.+++..|++..+...++.++.+.+++++|+..+++++...|++.
T Consensus 75 ~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~ 154 (694)
T PRK15179 75 LLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA 154 (694)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH
Confidence 33334557888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHH
Q 003557 228 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 299 (811)
Q Consensus 228 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 299 (811)
..++.+|.++.+.|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...+.
T Consensus 155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 155 REILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 999999999999999999999999999988999999999999999999999999999999988655444433
|
|
| >PLN02275 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-11 Score=132.47 Aligned_cols=134 Identities=10% Similarity=0.041 Sum_probs=100.1
Q ss_pred cEEEEecCCC--CCCCHHHHHHHHHHH-----------------hhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceE
Q 003557 602 KFIFACFNQL--YKMDPEIFNTWCNIL-----------------RRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQII 662 (811)
Q Consensus 602 ~~~~~~~~~~--~K~~~~~~~~~~~il-----------------~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~ 662 (811)
.++++..+|. .|..+.+++++..+. +..|+.+|+|+|+|+. ++.+++.++++|++ + |+
T Consensus 213 ~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~~-~~~l~~~~~~~~l~-~-v~ 289 (371)
T PLN02275 213 PALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKGPQ-KAMYEEKISRLNLR-H-VA 289 (371)
T ss_pred cEEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCCCC-HHHHHHHHHHcCCC-c-eE
Confidence 3456666664 599999999988764 2368999999999987 88999999999994 5 77
Q ss_pred EcC-CCChHHHHHhcCCCcEEecCC--C-CCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccccCCHHH
Q 003557 663 FTD-VAMKQEHIRRSSLADLFLDTP--L-CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKE 737 (811)
Q Consensus 663 ~~~-~~~~~~~~~~~~~~Dv~ld~~--~-~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~~~~~ 737 (811)
|.+ ..+.++....|+.+||++.|+ . .+| |++++|||+||+|||+...+... .++.. |..+ ++..++++
T Consensus 290 ~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~-----eiv~~-g~~G-~lv~~~~~ 362 (371)
T PLN02275 290 FRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIG-----ELVKD-GKNG-LLFSSSSE 362 (371)
T ss_pred EEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChH-----HHccC-CCCe-EEECCHHH
Confidence 755 688899999999999998643 2 245 89999999999999964422221 22222 5556 56667888
Q ss_pred HHHHHHHH
Q 003557 738 YEERAVSL 745 (811)
Q Consensus 738 y~~~~~~l 745 (811)
+++.+.+|
T Consensus 363 la~~i~~l 370 (371)
T PLN02275 363 LADQLLEL 370 (371)
T ss_pred HHHHHHHh
Confidence 88776665
|
|
| >PHA01630 putative group 1 glycosyl transferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.7e-12 Score=132.35 Aligned_cols=168 Identities=10% Similarity=0.043 Sum_probs=115.6
Q ss_pred cEEEEecCC--CCCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCC
Q 003557 602 KFIFACFNQ--LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 679 (811)
Q Consensus 602 ~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~ 679 (811)
.++++..++ ..|+.+.++++|.++.++.|+.+++++|.++. +.++ .++. . +.+..+.++....|+.+
T Consensus 142 ~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~-~~~l------~~~~-~---~~~~v~~~~l~~~y~~a 210 (331)
T PHA01630 142 PCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNML-DPRL------FGLN-G---VKTPLPDDDIYSLFAGC 210 (331)
T ss_pred CEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCccc-chhh------cccc-c---eeccCCHHHHHHHHHhC
Confidence 455555544 46999999999999998889999999996543 2222 2331 1 24456778888899999
Q ss_pred cEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHH---HHH-----------hc-CCCCccccCCHHHHHHHHH
Q 003557 680 DLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGS---LCL-----------AT-GLGEEMIVNSMKEYEERAV 743 (811)
Q Consensus 680 Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~---~l~-----------~~-g~~~~~v~~~~~~y~~~~~ 743 (811)
|||+-|+.++| |++++|||++|+|||+.....+..-+... +|- .. +. ..++..+.++..+.++
T Consensus 211 Dv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~-G~~v~~~~~~~~~~ii 289 (331)
T PHA01630 211 DILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHV-GYFLDPDIEDAYQKLL 289 (331)
T ss_pred CEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccc-ccccCCCHHHHHHHHH
Confidence 99999998888 99999999999999965433222211110 000 00 00 1133447788888899
Q ss_pred HHhcC---HHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 003557 744 SLALD---RQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 784 (811)
Q Consensus 744 ~l~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 784 (811)
++..| ++.++.++...+.. ...||.+..+++++++|++
T Consensus 290 ~~l~~~~~~~~~~~~~~~~~~~---~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 290 EALANWTPEKKKENLEGRAILY---RENYSYNAIAKMWEKILEK 330 (331)
T ss_pred HHHhCCCHHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHhc
Confidence 98887 45555555554443 3359999999999999964
|
|
| >cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.3e-12 Score=141.36 Aligned_cols=175 Identities=17% Similarity=0.074 Sum_probs=127.2
Q ss_pred CcCCCCCC--CCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecCChhh-HHHHHHHHHHcCCCCCceEEcCC
Q 003557 592 KRSDYGLP--EDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG-EMRLRAYAVAQGVQPDQIIFTDV 666 (811)
Q Consensus 592 ~r~~~gl~--~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~-~~~l~~~~~~~gi~~~rv~~~~~ 666 (811)
+|+++|++ ++.++++.++|+ .|+.+.+++++.++.+.. .+|+++|.|+.. ++.+++...+. .++|+|.+.
T Consensus 284 l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~--~~lvi~G~g~~~~~~~~~~~~~~~---~~~v~~~~~ 358 (476)
T cd03791 284 LQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLELG--GQLVILGSGDPEYEEALRELAARY---PGRVAVLIG 358 (476)
T ss_pred HHHHcCCCcCCCCCEEEEEeeccccccHHHHHHHHHHHHHcC--cEEEEEecCCHHHHHHHHHHHHhC---CCcEEEEEe
Confidence 57788986 678889988877 499999999999887643 889999987432 34555555554 467877664
Q ss_pred CChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCC------CCccc--cCCHHH
Q 003557 667 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGL------GEEMI--VNSMKE 737 (811)
Q Consensus 667 ~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~------~~~~v--~~~~~~ 737 (811)
.+.......|+.+|++|.|+.+++ |++.+|||++|+|||+........-+.. |. +. ++ ..++++
T Consensus 359 ~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~------~~~~~~~~~G-~~~~~~~~~~ 431 (476)
T cd03791 359 YDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVID------YNEDTGEGTG-FVFEGYNADA 431 (476)
T ss_pred CCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeC------CcCCCCCCCe-EEeCCCCHHH
Confidence 455555567899999999998888 9999999999999995433333222211 11 22 22 246888
Q ss_pred HHHHHHHHh---cCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 003557 738 YEERAVSLA---LDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 783 (811)
Q Consensus 738 y~~~~~~l~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 783 (811)
+.+.+.++. .+++.+.+++++..+. .|+++.+++++++.|+
T Consensus 432 l~~~i~~~l~~~~~~~~~~~~~~~~~~~-----~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 432 LLAALRRALALYRDPEAWRKLQRNAMAQ-----DFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHhcc-----CCChHHHHHHHHHHHh
Confidence 888877765 4777777777765442 4999999999999996
|
Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.2e-09 Score=110.65 Aligned_cols=318 Identities=15% Similarity=0.231 Sum_probs=185.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------CCC---
Q 003557 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI------------------------QPT--- 56 (811)
Q Consensus 4 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------------~p~--- 56 (811)
|-.+-++..|++.++.+|...+-+ ...+...+++++|.+.+...+.. +|+
T Consensus 152 ~lPets~rvyrRYLk~~P~~~eey---ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~ 228 (835)
T KOG2047|consen 152 GLPETSIRVYRRYLKVAPEAREEY---IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQ 228 (835)
T ss_pred CChHHHHHHHHHHHhcCHHHHHHH---HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhc
Confidence 334567777777777777654333 44566667777777766655432 121
Q ss_pred -----------------c-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHH-----HHHHHcC----
Q 003557 57 -----------------F-AIAWSNLAGLFMESGDLNRALQYYKEAVKLKP---TFPDAYLNLG-----NVYKALG---- 106 (811)
Q Consensus 57 -----------------~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la-----~~~~~~g---- 106 (811)
. ...|..||..|.+.|.+++|...|++++..-- +...++...+ .+..+++
T Consensus 229 slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~ 308 (835)
T KOG2047|consen 229 SLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADE 308 (835)
T ss_pred ccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 1 45678889999999999999999998876521 1111111111 0011111
Q ss_pred ---------ChHHHHHHHHHHHh------------hCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHH-cCCC-----c
Q 003557 107 ---------MPQEAIMCYQRAVQ------------TRPN-AIAFGNLASTYYERGQADMAILYYKQAIG-CDPR-----F 158 (811)
Q Consensus 107 ---------~~~~A~~~~~~al~------------~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~-----~ 158 (811)
+.+-....|+..+. .+|+ ...|..... ...|+..+-+..|.++++ .+|. .
T Consensus 309 ~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~ 386 (835)
T KOG2047|consen 309 ESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSP 386 (835)
T ss_pred cccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCCh
Confidence 11223333444333 2343 444444333 335666666667766663 3443 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC---------
Q 003557 159 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS----HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG--------- 225 (811)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--------- 225 (811)
...|..+|..|...|+.+.|..+|+++.+..-. -..+|...|..-....+++.|.++++.+......
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 346667777777777777777777777664322 2356667777777777777777777666543211
Q ss_pred ---------CchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCc
Q 003557 226 ---------LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR--PTM 294 (811)
Q Consensus 226 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 294 (811)
+...|..++......|-++.-...|++++++.--.+....+.|..+....-++++.+.|++.+.+. |.-
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 123466666666667777777777777777666666677777777777777777777777776664 444
Q ss_pred HHHHHHHHHH---HHhCCCHHHHHHHHHHHHhcCC
Q 003557 295 AEAHANLASA---YKDSGHVEAAIKSYKQALLLRP 326 (811)
Q Consensus 295 ~~~~~~la~~---~~~~g~~~~A~~~~~~al~~~p 326 (811)
.++|...-.- -+..-+.+.|...|+++++..|
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 4444433222 2223366777777777777666
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=125.95 Aligned_cols=256 Identities=15% Similarity=0.048 Sum_probs=188.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHH
Q 003557 32 NLMKAQGLVQEAYSCYLEALRIQPT-FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQE 110 (811)
Q Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 110 (811)
.-++-.|+|.+++..++ ....++. .......+.+++..+|+++..+.-... ..+....+...++..+...++.+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHH
Confidence 34556799999987776 2233332 356677888889999998876654433 223334566667776665556666
Q ss_pred HHHHHHHHHhhCCC---hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003557 111 AIMCYQRAVQTRPN---AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 187 (811)
Q Consensus 111 A~~~~~~al~~~p~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 187 (811)
++..++..+..... .......|.++...|++++|++.+.+. .+.+.......++...++++.|.+.++.+.+
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 76666655433222 345556677888889999999888764 5677888888999999999999999999988
Q ss_pred cCCCChHHHHHHHHHHHHcC--ChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 003557 188 LQPSHPQALTNLGNIYMEWN--MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLV 265 (811)
Q Consensus 188 ~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 265 (811)
.+.+..-+....+++....| ++.+|...|++..+..+.++..++.++.++..+|++++|.+.++++++.+|++++++.
T Consensus 160 ~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 160 IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA 239 (290)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence 87776655555555665555 6999999999998888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCH-HHHHHHHHHHHhcCCCcHH
Q 003557 266 NRGNTYKEIGRV-TDAIQDYIRAITIRPTMAE 296 (811)
Q Consensus 266 ~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~ 296 (811)
+++.+....|+. +.+.+++.+....+|+++.
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 999999999998 6677788888888998773
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=134.12 Aligned_cols=301 Identities=13% Similarity=0.181 Sum_probs=179.8
Q ss_pred eEeeecCCCCCChhHhhHHHHhcccCCC-CeEEEEEecCCCCChHHHHHHHhccC----ceEECCC--CC--------HH
Q 003557 427 RVGYVSSDFGNHPLSHLMGSVFGMHNKE-NVEVFCYALSPNDGTEWRQRTQSEAE----HFVDVSA--MS--------SD 491 (811)
Q Consensus 427 rvg~~s~~~~~h~~~~~l~~l~~~~d~~-~~ev~~y~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~--------~~ 491 (811)
||.++.+ .-|-...+.++++.+.++ .|++.+..++... ...+.+.+... ....+.. -+ ..
T Consensus 2 ~i~~~~g---tr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 76 (365)
T TIGR00236 2 KVSIVLG---TRPEAIKMAPLIRALKKYPEIDSYVIVTAQHR--EMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLE 76 (365)
T ss_pred eEEEEEe---cCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCH--HHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHH
Confidence 4555444 455556778888887654 6888888887654 23344443332 1122322 12 14
Q ss_pred HHHHHHHhCCCeEEEeCCCCCCCcchhhhh------cCCCceEEeccccCCCCCC----C-cccE----EEecCccCCcC
Q 003557 492 MIAKLINEDKIQILINLNGYTKGARNEIFA------MQPAPIQVSYMGFPGTTGA----S-YIDY----LVTDEFVSPLR 556 (811)
Q Consensus 492 ~~~~~i~~~~~dilv~~~~~~~~~~~~~~~------~r~Apvq~~~~g~~~t~g~----~-~~d~----~~~d~~~~p~~ 556 (811)
.+++.+++.++||+ |++|.+...++ ..-.|+.....|- -|.+. + .+.. .++|.+++|.+
T Consensus 77 ~l~~~l~~~~pDiv-----~~~gd~~~~la~a~aa~~~~ipv~h~~~g~-~s~~~~~~~~~~~~r~~~~~~ad~~~~~s~ 150 (365)
T TIGR00236 77 GLEELLLEEKPDIV-----LVQGDTTTTLAGALAAFYLQIPVGHVEAGL-RTGDRYSPMPEEINRQLTGHIADLHFAPTE 150 (365)
T ss_pred HHHHHHHHcCCCEE-----EEeCCchHHHHHHHHHHHhCCCEEEEeCCC-CcCCCCCCCccHHHHHHHHHHHHhccCCCH
Confidence 68889999999999 88887553332 1234774433222 22111 1 1101 13566777755
Q ss_pred CC-------CCCccceEEcCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC---CCCCHHHHHHHHHHH
Q 003557 557 YA-------HIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL---YKMDPEIFNTWCNIL 626 (811)
Q Consensus 557 ~~-------~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~---~K~~~~~~~~~~~il 626 (811)
.. ..-.+++...++..+..... ..........++.+|. ++.++++++.|. .|..+.+++++.++.
T Consensus 151 ~~~~~l~~~G~~~~~I~vign~~~d~~~~----~~~~~~~~~~~~~~~~-~~~~vl~~~hr~~~~~k~~~~ll~a~~~l~ 225 (365)
T TIGR00236 151 QAKDNLLRENVKADSIFVTGNTVIDALLT----NVEIAYSSPVLSEFGE-DKRYILLTLHRRENVGEPLENIFKAIREIV 225 (365)
T ss_pred HHHHHHHHcCCCcccEEEeCChHHHHHHH----HHhhccchhHHHhcCC-CCCEEEEecCchhhhhhHHHHHHHHHHHHH
Confidence 41 11123454455432211000 0000111234566764 344666666543 377899999999998
Q ss_pred hhcCCeEEEeecCC-hhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcc
Q 003557 627 RRVPNSALWLLRFP-AAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMI 705 (811)
Q Consensus 627 ~~~p~~~l~l~~~~-~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvv 705 (811)
++.|+.++++.+.+ +.....+ .+..+. .++|.|.|..++.+++.++..+|+++-++ | ..++|||++|+|||
T Consensus 226 ~~~~~~~~vi~~~~~~~~~~~~---~~~~~~-~~~v~~~~~~~~~~~~~~l~~ad~vv~~S---g-~~~~EA~a~g~PvI 297 (365)
T TIGR00236 226 EEFEDVQIVYPVHLNPVVREPL---HKHLGD-SKRVHLIEPLEYLDFLNLAANSHLILTDS---G-GVQEEAPSLGKPVL 297 (365)
T ss_pred HHCCCCEEEEECCCChHHHHHH---HHHhCC-CCCEEEECCCChHHHHHHHHhCCEEEECC---h-hHHHHHHHcCCCEE
Confidence 88899988887543 3222222 233465 57899999888889999999999998654 3 34799999999999
Q ss_pred ccc--CCccccchhHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 003557 706 TLP--LEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKL 759 (811)
Q Consensus 706 t~~--g~~~~~r~~~~~l~~~g~~~~~v~~~~~~y~~~~~~l~~d~~~~~~~~~~~ 759 (811)
+.. |.... +. ..|..- ++..|+++..+.+.++.+|++.+.+++...
T Consensus 298 ~~~~~~~~~e------~~-~~g~~~-lv~~d~~~i~~ai~~ll~~~~~~~~~~~~~ 345 (365)
T TIGR00236 298 VLRDTTERPE------TV-EAGTNK-LVGTDKENITKAAKRLLTDPDEYKKMSNAS 345 (365)
T ss_pred ECCCCCCChH------HH-hcCceE-EeCCCHHHHHHHHHHHHhChHHHHHhhhcC
Confidence 863 22111 11 124433 555699999999999999999888887644
|
Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other. |
| >cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-11 Score=131.17 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=109.0
Q ss_pred cCCCCCCCCcEEEEecCCCC--CCCHHH-HHHHHHHHhhcCCeE-EEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCC
Q 003557 593 RSDYGLPEDKFIFACFNQLY--KMDPEI-FNTWCNILRRVPNSA-LWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAM 668 (811)
Q Consensus 593 r~~~gl~~~~~~~~~~~~~~--K~~~~~-~~~~~~il~~~p~~~-l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~ 668 (811)
|.+++++++.+++..+++.. |....+ ++++..+. + ++.. ++++|.+ . .+.+++.++++ .++|.|.|..
T Consensus 172 ~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~-~-~~~~~~~i~G~g-~-~~~l~~~~~~~---~~~v~~~g~~- 243 (350)
T cd03785 172 RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELL-R-KRLQVIHQTGKG-D-LEEVKKAYEEL---GVNYEVFPFI- 243 (350)
T ss_pred HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhh-c-cCeEEEEEcCCc-c-HHHHHHHHhcc---CCCeEEeehh-
Confidence 77888988887777665442 444444 35555443 2 4555 4466766 3 56787777765 3789999975
Q ss_pred hHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCcc---ccchhHHHHHhcCCCCccccC---CHHHHHHHH
Q 003557 669 KQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM---ATRVAGSLCLATGLGEEMIVN---SMKEYEERA 742 (811)
Q Consensus 669 ~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~---~~r~~~~~l~~~g~~~~~v~~---~~~~y~~~~ 742 (811)
.+...+|..+|+++.++ |++|++|||++|+|||+.+-... .....+..+...|..- ++.. |++++.+.+
T Consensus 244 -~~~~~~l~~ad~~v~~s---g~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~-~v~~~~~~~~~l~~~i 318 (350)
T cd03785 244 -DDMAAAYAAADLVISRA---GASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAV-LIPQEELTPERLAAAL 318 (350)
T ss_pred -hhHHHHHHhcCEEEECC---CHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEE-EEecCCCCHHHHHHHH
Confidence 56667788999999533 67899999999999997642211 1111134455556544 4442 799999999
Q ss_pred HHHhcCHHHHHHHHHHHHhhc
Q 003557 743 VSLALDRQKLQALTNKLKSVR 763 (811)
Q Consensus 743 ~~l~~d~~~~~~~~~~~~~~~ 763 (811)
..+..|++.+..|+++.++..
T Consensus 319 ~~ll~~~~~~~~~~~~~~~~~ 339 (350)
T cd03785 319 LELLSDPERLKAMAEAARSLA 339 (350)
T ss_pred HHHhcCHHHHHHHHHHHHhcC
Confidence 999999999999999888764
|
It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-11 Score=109.59 Aligned_cols=118 Identities=20% Similarity=0.248 Sum_probs=103.5
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 003557 214 SYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 293 (811)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 293 (811)
+.+++++..+|++......++..+...|++++|...++++++.+|.++.++..+|.++...|++++|..+++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45777888888888888888888888899999999999988888888999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHH
Q 003557 294 MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 331 (811)
Q Consensus 294 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 331 (811)
++..++.+|.++...|++++|+..|+++++++|++...
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 99999999999999999999999999999998887653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-11 Score=118.73 Aligned_cols=112 Identities=32% Similarity=0.462 Sum_probs=102.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC
Q 003557 230 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 309 (811)
Q Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 309 (811)
+..-|.-+.+.++|++|+..|.++++++|.++..|.+.+.+|.++|.++.|++.++.++.++|....+|..||.+|..+|
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 44567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHhhh
Q 003557 310 HVEAAIKSYKQALLLRPDFPEATCNLLHTLQC 341 (811)
Q Consensus 310 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 341 (811)
++++|++.|+++++++|++.....+|-..-..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999777776554443
|
|
| >PRK13608 diacylglycerol glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-11 Score=131.41 Aligned_cols=180 Identities=14% Similarity=0.078 Sum_probs=126.6
Q ss_pred CcCCCCCCCCcE-EEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEee-cCChhhHHHHHHHHHHcCCCCCceEEcCCC
Q 003557 592 KRSDYGLPEDKF-IFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLL-RFPAAGEMRLRAYAVAQGVQPDQIIFTDVA 667 (811)
Q Consensus 592 ~r~~~gl~~~~~-~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~-~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~ 667 (811)
.|.++|++++.. ++...++. .|....+++.+ ++..|+.+++++ |.++...+.+.+. .+. .++|.|.|+.
T Consensus 192 ~~~~~~l~~~~~~ilv~~G~lg~~k~~~~li~~~---~~~~~~~~~vvv~G~~~~l~~~l~~~---~~~-~~~v~~~G~~ 264 (391)
T PRK13608 192 WLIDNNLDPDKQTILMSAGAFGVSKGFDTMITDI---LAKSANAQVVMICGKSKELKRSLTAK---FKS-NENVLILGYT 264 (391)
T ss_pred HHHHcCCCCCCCEEEEECCCcccchhHHHHHHHH---HhcCCCceEEEEcCCCHHHHHHHHHH---hcc-CCCeEEEecc
Confidence 456789986654 34344544 47777787765 345577787665 4333223344432 344 3689999976
Q ss_pred ChHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 003557 668 MKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL 747 (811)
Q Consensus 668 ~~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~~~~~y~~~~~~l~~ 747 (811)
+ +...+|+.+|+++. -.||+|++|||++|+|+|+..-........+-++...|.. ++..|++++++.+.+|.+
T Consensus 265 ~--~~~~~~~~aDl~I~---k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g--~~~~~~~~l~~~i~~ll~ 337 (391)
T PRK13608 265 K--HMNEWMASSQLMIT---KPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFG--KIADTPEEAIKIVASLTN 337 (391)
T ss_pred c--hHHHHHHhhhEEEe---CCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcE--EEeCCHHHHHHHHHHHhc
Confidence 3 45556788999985 2578999999999999998742222234445666777774 456799999999999999
Q ss_pred CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHH
Q 003557 748 DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 788 (811)
Q Consensus 748 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 788 (811)
|++.+.+|+++.++.. ..++.+..++.+++.+..+-++
T Consensus 338 ~~~~~~~m~~~~~~~~---~~~s~~~i~~~l~~l~~~~~~~ 375 (391)
T PRK13608 338 GNEQLTNMISTMEQDK---IKYATQTICRDLLDLIGHSSQP 375 (391)
T ss_pred CHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHhhhhhhh
Confidence 9999999999998864 2389999999999888765543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.6e-11 Score=107.18 Aligned_cols=114 Identities=21% Similarity=0.273 Sum_probs=102.2
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003557 11 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT 90 (811)
Q Consensus 11 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 90 (811)
+.++++++.+|++....+.+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788888889888888899999999999999999999999989999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 003557 91 FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124 (811)
Q Consensus 91 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 124 (811)
++..++.+|.++...|++++|+..++++++.+|+
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 8899999999999999999999999999888887
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.3e-11 Score=126.67 Aligned_cols=158 Identities=18% Similarity=0.232 Sum_probs=107.2
Q ss_pred cCCCCCCCCcEEEEecCCCC--CCCHH-HHHHHHHHHhhcCCeEE-EeecCChhhHHHHHHHHHHcCCCCCceEEcCCCC
Q 003557 593 RSDYGLPEDKFIFACFNQLY--KMDPE-IFNTWCNILRRVPNSAL-WLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAM 668 (811)
Q Consensus 593 r~~~gl~~~~~~~~~~~~~~--K~~~~-~~~~~~~il~~~p~~~l-~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~ 668 (811)
+..+|++++.++++++++.. |.... +++++.++.+. +.++ ++.|.+ . .+.+++.+.+.|+ .++|.|...
T Consensus 170 ~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~--~~~~~~~~g~~-~-~~~l~~~~~~~~l-~~~v~~~~~-- 242 (348)
T TIGR01133 170 RERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAEK--GIQIVHQTGKN-D-LEKVKNVYQELGI-EAIVTFIDE-- 242 (348)
T ss_pred hhhcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhhc--CcEEEEECCcc-h-HHHHHHHHhhCCc-eEEecCccc--
Confidence 45688988888888876543 44333 34666655442 3344 334443 2 4678888888888 467777631
Q ss_pred hHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCcccc--chhHHHHHhcCCCCcccc-C--CHHHHHHHHH
Q 003557 669 KQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMAT--RVAGSLCLATGLGEEMIV-N--SMKEYEERAV 743 (811)
Q Consensus 669 ~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~--r~~~~~l~~~g~~~~~v~-~--~~~~y~~~~~ 743 (811)
+...+|..+|+++.+ +|++|++|||++|+|+|+.+-+...+ +....++...|..- ++. . +++++++.+.
T Consensus 243 --~~~~~l~~ad~~v~~---~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~-~~~~~~~~~~~l~~~i~ 316 (348)
T TIGR01133 243 --NMAAAYAAADLVISR---AGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGL-VIRQKELLPEKLLEALL 316 (348)
T ss_pred --CHHHHHHhCCEEEEC---CChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEE-EEecccCCHHHHHHHHH
Confidence 555667889999964 36789999999999999764322111 22334566644433 442 2 4999999999
Q ss_pred HHhcCHHHHHHHHHHHHhhc
Q 003557 744 SLALDRQKLQALTNKLKSVR 763 (811)
Q Consensus 744 ~l~~d~~~~~~~~~~~~~~~ 763 (811)
++..|++.+.+|+++.++..
T Consensus 317 ~ll~~~~~~~~~~~~~~~~~ 336 (348)
T TIGR01133 317 KLLLDPANLEAMAEAARKLA 336 (348)
T ss_pred HHHcCHHHHHHHHHHHHhcC
Confidence 99999999999999987754
|
RL J Bacteriol 1993 Mar;175(6):1841-3 |
| >cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc) | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.6e-11 Score=129.46 Aligned_cols=291 Identities=13% Similarity=0.115 Sum_probs=174.3
Q ss_pred hhHHHHhcccCCC-CeEEEEEecCCCCChHHHHHHHh-----ccCceEECCCCC----------HHHHHHHHHhCCCeEE
Q 003557 442 HLMGSVFGMHNKE-NVEVFCYALSPNDGTEWRQRTQS-----EAEHFVDVSAMS----------SDMIAKLINEDKIQIL 505 (811)
Q Consensus 442 ~~l~~l~~~~d~~-~~ev~~y~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~----------~~~~~~~i~~~~~dil 505 (811)
-.+.++++.+.+. ++++.++.++...+..+...+.. ..+....+.+.+ ...+.+.|++.++||+
T Consensus 13 ~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvV 92 (363)
T cd03786 13 IKLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLLIGLEAVLLEEKPDLV 92 (363)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 3566777777654 79999888886654433322222 122333333321 2457788899999999
Q ss_pred EeCCCCCCCcchhhh----hcC--CCceEEeccccCCC--CCCCc--cc---EEEecCccCCcCCCCCC-------ccce
Q 003557 506 INLNGYTKGARNEIF----AMQ--PAPIQVSYMGFPGT--TGASY--ID---YLVTDEFVSPLRYAHIY-------SEKL 565 (811)
Q Consensus 506 v~~~~~~~~~~~~~~----~~r--~Apvq~~~~g~~~t--~g~~~--~d---~~~~d~~~~p~~~~~~~-------~e~~ 565 (811)
|++|.+...+ +.+ --|+....-|.. | .+.+. .- .-.+|.++++.+....+ .+++
T Consensus 93 -----~~~g~~~~~~~~~~aa~~~~iPvv~~~~g~~-s~~~~~~~~~~r~~~~~~ad~~~~~s~~~~~~l~~~G~~~~kI 166 (363)
T cd03786 93 -----LVLGDTNETLAAALAAFKLGIPVAHVEAGLR-SFDRGMPDEENRHAIDKLSDLHFAPTEEARRNLLQEGEPPERI 166 (363)
T ss_pred -----EEeCCchHHHHHHHHHHHcCCCEEEEecccc-cCCCCCCchHHHHHHHHHhhhccCCCHHHHHHHHHcCCCcccE
Confidence 7776553222 222 237654432311 1 01111 00 12456666665542211 2334
Q ss_pred EEcCCccccCCCccccccCCCCCC-CCCcCCCCCCCCcEEEEecCCC-----CCCCHHHHHHHHHHHhhcCCeEEEeecC
Q 003557 566 VHVPHCYFVNDYKQKNMDVLDPNC-QPKRSDYGLPEDKFIFACFNQL-----YKMDPEIFNTWCNILRRVPNSALWLLRF 639 (811)
Q Consensus 566 ~~lp~~~~~~~~~~~~~~~~~~~~-~~~r~~~gl~~~~~~~~~~~~~-----~K~~~~~~~~~~~il~~~p~~~l~l~~~ 639 (811)
...++...... .....+.. ...|..+|++++.+++.++++. .|..+.+++++.++... +..+++.|.
T Consensus 167 ~vign~v~d~~-----~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~--~~~vi~~~~ 239 (363)
T cd03786 167 FVVGNTMIDAL-----LRLLELAKKELILELLGLLPKKYILVTLHRVENVDDGEQLEEILEALAELAEE--DVPVVFPNH 239 (363)
T ss_pred EEECchHHHHH-----HHHHHhhccchhhhhcccCCCCEEEEEeCCccccCChHHHHHHHHHHHHHHhc--CCEEEEECC
Confidence 44443321100 00000111 1234578888877777777764 47788999998877543 456665565
Q ss_pred ChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHH
Q 003557 640 PAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGS 719 (811)
Q Consensus 640 ~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~ 719 (811)
++. +..+++.+.+.++..++|.|.|.....+...+|..+|+++-++. | .+.||+++|+|||+....+- .+
T Consensus 240 ~~~-~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg---g-i~~Ea~~~g~PvI~~~~~~~-~~---- 309 (363)
T cd03786 240 PRT-RPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG---G-IQEEASFLGVPVLNLRDRTE-RP---- 309 (363)
T ss_pred CCh-HHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc---c-HHhhhhhcCCCEEeeCCCCc-cc----
Confidence 554 77888888888874478999997777788888999999997763 3 57899999999998754221 11
Q ss_pred HHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHH
Q 003557 720 LCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALT 756 (811)
Q Consensus 720 ~l~~~g~~~~~v~~~~~~y~~~~~~l~~d~~~~~~~~ 756 (811)
.+...|..- ++.+++++.++.+.++.+|+..+..|+
T Consensus 310 ~~~~~g~~~-~~~~~~~~i~~~i~~ll~~~~~~~~~~ 345 (363)
T cd03786 310 ETVESGTNV-LVGTDPEAILAAIEKLLSDEFAYSLMS 345 (363)
T ss_pred hhhheeeEE-ecCCCHHHHHHHHHHHhcCchhhhcCC
Confidence 122235543 444578999999999999998877765
|
The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st |
| >cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.2e-11 Score=131.44 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=124.1
Q ss_pred CCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhcCC----eEEEeecCCh----hhHHHHHHHHH----HcCCC----
Q 003557 596 YGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPN----SALWLLRFPA----AGEMRLRAYAV----AQGVQ---- 657 (811)
Q Consensus 596 ~gl~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~l~~~~~----~~~~~l~~~~~----~~gi~---- 657 (811)
.+++.+.+++++++|+. |+.+.+++++.+++++.|+ .+|+++|.+. .....+++.+. +.+..
T Consensus 258 ~~~~~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~ 337 (460)
T cd03788 258 RERLGGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTL 337 (460)
T ss_pred HHhcCCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCC
Confidence 45566778889999874 9999999999999999996 5687776432 11233444433 32211
Q ss_pred -CCceEE-cCCCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCC----cccccCCccccchhHHHHHhcCCCCcc
Q 003557 658 -PDQIIF-TDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLP----MITLPLEKMATRVAGSLCLATGLGEEM 730 (811)
Q Consensus 658 -~~rv~~-~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~P----vvt~~g~~~~~r~~~~~l~~~g~~~~~ 730 (811)
-..|+| .|..+..+..++|+.+||||.|+..+| |++++|||++|+| ||+ |+.++..- . +.+. +
T Consensus 338 ~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~-------S~~~G~~~-~-~~~g-~ 407 (460)
T cd03788 338 DWTPVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLIL-------SEFAGAAE-E-LSGA-L 407 (460)
T ss_pred CceeEEEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEE-------eccccchh-h-cCCC-E
Confidence 123554 567789999999999999999999999 9999999999999 663 33321110 0 3334 4
Q ss_pred cc--CCHHHHHHHHHHHhcC-HHHHHHHHHHHHhhcccCCCCChHHHHHHHHH
Q 003557 731 IV--NSMKEYEERAVSLALD-RQKLQALTNKLKSVRLTCPLFDTARWVKNLER 780 (811)
Q Consensus 731 v~--~~~~~y~~~~~~l~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 780 (811)
+. .|++++++++.++.++ ++.++.++++.++.+. .||...+++++..
T Consensus 408 lv~p~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~---~~~~~~w~~~~l~ 457 (460)
T cd03788 408 LVNPYDIDEVADAIHRALTMPLEERRERHRKLREYVR---THDVQAWANSFLD 457 (460)
T ss_pred EECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHH
Confidence 43 4899999999998875 4777788888888764 3999999888754
|
It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-10 Score=101.92 Aligned_cols=107 Identities=21% Similarity=0.155 Sum_probs=97.2
Q ss_pred Hhcc-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHH
Q 003557 220 LAVT-TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 298 (811)
Q Consensus 220 l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 298 (811)
.... ++..+..+.+|..+...|++++|.+.|+-+...+|.+...|+++|.++..+|++++|+..|.+++.++|+++..+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3445 566677888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 003557 299 ANLASAYKDSGHVEAAIKSYKQALLLRP 326 (811)
Q Consensus 299 ~~la~~~~~~g~~~~A~~~~~~al~~~p 326 (811)
+++|.|+...|+.+.|++.|+.++...-
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998763
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.3e-09 Score=108.91 Aligned_cols=153 Identities=26% Similarity=0.241 Sum_probs=133.9
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHH
Q 003557 156 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAV 235 (811)
Q Consensus 156 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~ 235 (811)
|....+++..+..++..|++++|+..+...++..|+|+..+...+.++.+.++.++|.+.+++++...|.......++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 66777888889999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHH
Q 003557 236 IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 315 (811)
Q Consensus 236 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 315 (811)
.|.+.|++.+|+..++..+..+|+++..|..+++.|..+|+..+|.. ..+..|...|++++|+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999988766554 4556677788999999
Q ss_pred HHHHHHHhcC
Q 003557 316 KSYKQALLLR 325 (811)
Q Consensus 316 ~~~~~al~~~ 325 (811)
..+..+.+..
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 9988888775
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.8e-10 Score=99.16 Aligned_cols=105 Identities=13% Similarity=0.020 Sum_probs=96.2
Q ss_pred hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 003557 18 ALN-PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYL 96 (811)
Q Consensus 18 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 96 (811)
... ++..+..+.+|..++..|++++|...|+.+...+|.+...|+.||.++..+|++++|+..|.+++.++|+++..++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 345 6677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhC
Q 003557 97 NLGNVYKALGMPQEAIMCYQRAVQTR 122 (811)
Q Consensus 97 ~la~~~~~~g~~~~A~~~~~~al~~~ 122 (811)
++|.++...|+.+.|.+.|+.++...
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999998865
|
|
| >TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.9e-10 Score=123.27 Aligned_cols=175 Identities=16% Similarity=0.182 Sum_probs=125.4
Q ss_pred CcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhcCC----eEEEeecC-----ChhhHHHHHHHHHHc------
Q 003557 592 KRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPN----SALWLLRF-----PAAGEMRLRAYAVAQ------ 654 (811)
Q Consensus 592 ~r~~~gl~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~l~~~-----~~~~~~~l~~~~~~~------ 654 (811)
+|+.+ .+..++++++|+. |+.+..++++.+++++.|+ .+|+++|. ++. ...+++.+++.
T Consensus 252 lr~~~---~~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~-~~~l~~~i~~lv~~in~ 327 (456)
T TIGR02400 252 LRESL---KGRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPE-YQQLRRQVEELVGRING 327 (456)
T ss_pred HHHHc---CCCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchH-HHHHHHHHHHHHHHHHh
Confidence 45444 2567888999884 9999999999999999997 45776642 222 45566666554
Q ss_pred --CC-CCCceEE-cCCCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCC----cccccCCccccchhHHHHHhcC
Q 003557 655 --GV-QPDQIIF-TDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLP----MITLPLEKMATRVAGSLCLATG 725 (811)
Q Consensus 655 --gi-~~~rv~~-~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~P----vvt~~g~~~~~r~~~~~l~~~g 725 (811)
|- +-.-|++ .+..+..+..++|+.+||||.|+..+| |++++|||++|+| ||+ |+.++. -..++
T Consensus 328 ~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVl-------S~~~G~-~~~l~ 399 (456)
T TIGR02400 328 RFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLIL-------SEFAGA-AQELN 399 (456)
T ss_pred ccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEE-------eCCCCC-hHHhC
Confidence 21 1011444 456788999999999999999999999 9999999999999 663 333310 01112
Q ss_pred CCCccc-cCCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 003557 726 LGEEMI-VNSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 782 (811)
Q Consensus 726 ~~~~~v-~~~~~~y~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 782 (811)
...+| ..|++++++++.++.+ +++.+....+++++++.. ||...+++++....
T Consensus 400 -~gllVnP~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~---~~~~~W~~~~l~~l 454 (456)
T TIGR02400 400 -GALLVNPYDIDGMADAIARALTMPLEEREERHRAMMDKLRK---NDVQRWREDFLSDL 454 (456)
T ss_pred -CcEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHh
Confidence 23122 3589999998888876 678888888888888643 99999999877544
|
This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.9e-10 Score=110.54 Aligned_cols=118 Identities=25% Similarity=0.369 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 003557 195 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 274 (811)
Q Consensus 195 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 274 (811)
.+-.-|.-+.+.++|++|+..|.++++++|.++..|.+.+.+|.++|.++.|++.++.++.++|.+..+|..+|.+|..+
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence 34455667777778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHH
Q 003557 275 GRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 312 (811)
Q Consensus 275 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 312 (811)
|++++|++.|+++++++|++...+.+|..+-.+.++..
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 88888888888888888888877777777766666554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.4e-09 Score=107.21 Aligned_cols=152 Identities=23% Similarity=0.159 Sum_probs=84.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 003557 89 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN 167 (811)
Q Consensus 89 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 167 (811)
|....+++..+..++..|++++|+..++..+...|+ ...+...+.++...++.++|.+.+++++..+|+......++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 344455555555555555555555555555555555 4444455555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHH
Q 003557 168 ALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAI 247 (811)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (811)
.|.+.|++.+|+..++..+..+|+++..|..++..|..+|+..+|... .+..|...|++++|+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHH
Confidence 555555555555555555555555555555555555555555444433 233444556666666
Q ss_pred HHHHHHHhcC
Q 003557 248 SCYNEVLRID 257 (811)
Q Consensus 248 ~~~~~al~~~ 257 (811)
..+..+.+..
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 6666655544
|
|
| >PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.6e-10 Score=122.40 Aligned_cols=161 Identities=15% Similarity=0.164 Sum_probs=109.0
Q ss_pred CCcCCCCCCCCcEEEEec-C-CCC---CCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHc-CCCCCceEEc
Q 003557 591 PKRSDYGLPEDKFIFACF-N-QLY---KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQ-GVQPDQIIFT 664 (811)
Q Consensus 591 ~~r~~~gl~~~~~~~~~~-~-~~~---K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~-gi~~~rv~~~ 664 (811)
..|.++|++++.++++.+ + |.. ++.+.+++++..+.++.|+.+++++|.++..++.+++...+. |+. +.+.
T Consensus 175 ~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~---v~~~ 251 (380)
T PRK00025 175 AARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLE---VTLL 251 (380)
T ss_pred HHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCC---eEEE
Confidence 356789998776554433 3 322 457888999998888889999888876344367788877777 663 5554
Q ss_pred CCCChHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHHHHH---hcC----------CCCccc
Q 003557 665 DVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCL---ATG----------LGEEMI 731 (811)
Q Consensus 665 ~~~~~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~---~~g----------~~~~~v 731 (811)
. .+...+|+.+|+++-++ |++++|||++|+|||+.+....-....+..+. ..| .++ ++
T Consensus 252 ~----~~~~~~~~~aDl~v~~s----G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~ 322 (380)
T PRK00025 252 D----GQKREAMAAADAALAAS----GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPE-LL 322 (380)
T ss_pred c----ccHHHHHHhCCEEEECc----cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchh-hc
Confidence 3 24566789999999764 67777999999999976433222211111111 112 233 33
Q ss_pred c--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 003557 732 V--NSMKEYEERAVSLALDRQKLQALTNKLKSVR 763 (811)
Q Consensus 732 ~--~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~ 763 (811)
. .|++++.+.+.++.+|++.+++|++.+++..
T Consensus 323 ~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 356 (380)
T PRK00025 323 QEEATPEKLARALLPLLADGARRQALLEGFTELH 356 (380)
T ss_pred CCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 2 3688999999999999999999999874443
|
|
| >PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-10 Score=106.03 Aligned_cols=129 Identities=16% Similarity=0.171 Sum_probs=87.1
Q ss_pred cEEEEecCCCC--CCCHHHHH-HHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCC
Q 003557 602 KFIFACFNQLY--KMDPEIFN-TWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 678 (811)
Q Consensus 602 ~~~~~~~~~~~--K~~~~~~~-~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 678 (811)
.++||.+++.. |....+++ +|.++.++.|+..|.++|.++. ++++. ..++|.|.|.. +++...++.
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~---~l~~~------~~~~v~~~g~~--~e~~~~l~~ 70 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD---ELKRL------RRPNVRFHGFV--EELPEILAA 70 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS----HHCCH------HHCTEEEE-S---HHHHHHHHC
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH---HHHHh------cCCCEEEcCCH--HHHHHHHHh
Confidence 46788888765 88899999 9999999999999999998654 24333 24689999987 588899999
Q ss_pred CcEEecCCC-CCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccccCCHHHHHHHHHHHhcC
Q 003557 679 ADLFLDTPL-CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALD 748 (811)
Q Consensus 679 ~Dv~ld~~~-~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~~~~~y~~~~~~l~~d 748 (811)
+||++.|+. .++ +++++|+|++|+|||+... .+ ..+....|..- ++.+|++++++.+.+|..|
T Consensus 71 ~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-~~-----~~~~~~~~~~~-~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 71 ADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-GA-----EGIVEEDGCGV-LVANDPEELAEAIERLLND 135 (135)
T ss_dssp -SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-HC-----HCHS---SEEE-E-TT-HHHHHHHHHHHHH-
T ss_pred CCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-ch-----hhheeecCCeE-EECCCHHHHHHHHHHHhcC
Confidence 999999985 344 8999999999999997654 11 11222224443 6688999999999999876
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.5e-08 Score=99.53 Aligned_cols=179 Identities=17% Similarity=0.083 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHH
Q 003557 23 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA---WSNLAGLFMESGDLNRALQYYKEAVKLKPTFP---DAYL 96 (811)
Q Consensus 23 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 96 (811)
++..++..|..+...|++++|++.|++++...|....+ .+.+|.++++.+++++|+..+++.++.+|+++ .+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 45556666666666677777777777766666665333 36666666667777777777777766666543 3555
Q ss_pred HHHHHHHHcCC------------------hHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 003557 97 NLGNVYKALGM------------------PQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRF 158 (811)
Q Consensus 97 ~la~~~~~~g~------------------~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 158 (811)
.+|.++...+. ..+|+..|++.++..|+.... .+|...+..+. ..-
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya-------------~~A~~rl~~l~---~~l 174 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT-------------TDATKRLVFLK---DRL 174 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH-------------HHHHHHHHHHH---HHH
Confidence 66655433320 134555555555555552110 11111111100 000
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHcCChHHHHHHHH
Q 003557 159 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP---QALTNLGNIYMEWNMLPAAASYYK 217 (811)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~ 217 (811)
..--..+|..|.+.|.|..|+.-++.+++..|+.+ +++..++..|...|..++|.....
T Consensus 175 a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 175 AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 11223455566666666666666666666655533 455555556666666555555443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-07 Score=94.08 Aligned_cols=231 Identities=13% Similarity=0.134 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C----HHH
Q 003557 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF---AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT--F----PDA 94 (811)
Q Consensus 24 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~ 94 (811)
+......|.-++...++++|+..+.+.+..-.+. ...+-.+..+...+|.+++++.+--..+....+ + -++
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea 85 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA 85 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777778888888888888777653332 234445556677777777766654444332111 1 235
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhC---CC---hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHH
Q 003557 95 YLNLGNVYKALGMPQEAIMCYQRAVQTR---PN---AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF------LEAY 162 (811)
Q Consensus 95 ~~~la~~~~~~g~~~~A~~~~~~al~~~---p~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~ 162 (811)
+.+++..+.+..++.+++.+-+..+... |. ......++..+..++.++++++.|+++++...++ ..++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 6667777777777777776666665542 21 3455556666666667777777777766543222 1255
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC----Ch------HHHHHHHHHHHHcCChHHHHHHHHHHHhcc------CCC
Q 003557 163 NNLGNALKDVGRVDEAIQCYNQCLSLQPS----HP------QALTNLGNIYMEWNMLPAAASYYKATLAVT------TGL 226 (811)
Q Consensus 163 ~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------~~~ 226 (811)
..+|..+....++++|.-+..++.++... +. .+++.++..+..+|..-.|.++.+++.++. +..
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 66666666666777766666666654321 11 234445555555555555555555554432 111
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003557 227 SAPFNNLAVIYKQQGNYADAISCYNEVL 254 (811)
Q Consensus 227 ~~~~~~la~~~~~~g~~~~A~~~~~~al 254 (811)
......+|.+|...|+.+.|..-|+.+.
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2233344555555555555555555544
|
|
| >cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-09 Score=106.92 Aligned_cols=106 Identities=17% Similarity=0.146 Sum_probs=83.8
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHH-hcCCCcEE
Q 003557 604 IFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIR-RSSLADLF 682 (811)
Q Consensus 604 ~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~-~~~~~Dv~ 682 (811)
.+|.++ ..|..+.+++++.++.++.|+.+++++|.+.. ...........+. .++|.+.|..+..+.+. +++.+|++
T Consensus 109 ~~g~~~-~~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~-~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~di~ 185 (229)
T cd01635 109 FVGRLA-PEKGLDDLIEAFALLKERGPDLKLVIAGDGPE-REYLEELLAALLL-LDRVIFLGGLDPEELLALLLAAADVF 185 (229)
T ss_pred EEEeec-ccCCHHHHHHHHHHHHHhCCCeEEEEEeCCCC-hHHHHHHHHhcCC-cccEEEeCCCCcHHHHHHHhhcCCEE
Confidence 556555 45999999999999999999999999998765 5555554667777 58999999775555444 45559999
Q ss_pred ecCCCCCC-hhHHHHHHHhCCCcccccCCcc
Q 003557 683 LDTPLCNA-HTTGTDILWAGLPMITLPLEKM 712 (811)
Q Consensus 683 ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~ 712 (811)
+.|+..++ |++++|||++|+|||+.....+
T Consensus 186 l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 186 VLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred EecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 99987777 9999999999999996554433
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.1e-08 Score=99.07 Aligned_cols=301 Identities=16% Similarity=0.196 Sum_probs=169.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCC---hhHHHhH
Q 003557 62 SNLAGLFMESGDLNRALQYYKEAVKLKPTFP---DAYLNLGNVYKALGMPQEAIMCYQRAVQT----RPN---AIAFGNL 131 (811)
Q Consensus 62 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~---~~~~~~l 131 (811)
...|.-++...++++|+..+.+.+..-.+.. ..+-.+..+...+|.+++++.+--..++. +.. .+++.++
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnl 89 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNL 89 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666666666665432221 23344555666666666655543333322 211 5566667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh------HHHHHHH
Q 003557 132 ASTYYERGQADMAILYYKQAIGCDPR-----FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP------QALTNLG 200 (811)
Q Consensus 132 a~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la 200 (811)
+..+....++.+++.+-+..+..... -......++.++..++.++++++.|+++++...++. .++..++
T Consensus 90 ar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg 169 (518)
T KOG1941|consen 90 ARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLG 169 (518)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHH
Confidence 77777666777776666665543211 123455566667777777777777777766533221 3566677
Q ss_pred HHHHHcCChHHHHHHHHHHHhccCC----C------chHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHH
Q 003557 201 NIYMEWNMLPAAASYYKATLAVTTG----L------SAPFNNLAVIYKQQGNYADAISCYNEVLRID------PLAADGL 264 (811)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~l~~~~~----~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~ 264 (811)
.++....++++|..+..++.++... + ..+++.++..+..+|+.-.|.++.+++.++. +......
T Consensus 170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~ 249 (518)
T KOG1941|consen 170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCL 249 (518)
T ss_pred HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 7777777777777776666655321 1 1235566666777777777777776665542 2234455
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHhCCCHHH-----HHHHHHHHHhcCCCC-----
Q 003557 265 VNRGNTYKEIGRVTDAIQDYIRAITIRP------TMAEAHANLASAYKDSGHVEA-----AIKSYKQALLLRPDF----- 328 (811)
Q Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~p~~----- 328 (811)
..+|.+|...|+.+.|..-|+++...-. ...+++...+.++....-..+ |++.-++++++...-
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~ 329 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLS 329 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHH
Confidence 6667777777777777777776664421 123455555555554433333 666666665543221
Q ss_pred -hHHHHHHHHHhhhcCChhhHhHHHHHHHHHHHHH
Q 003557 329 -PEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQ 362 (811)
Q Consensus 329 -~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l~~~~ 362 (811)
-..+..++.+|...|.-++-...+..+-+..+++
T Consensus 330 vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~e~ 364 (518)
T KOG1941|consen 330 VLKLHCRLASIYRSKGLQDELRAHVVRAHECVEET 364 (518)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 1234556666666666666555665555555544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.5e-08 Score=111.38 Aligned_cols=214 Identities=13% Similarity=0.049 Sum_probs=141.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCC-----hhHHHhHHHHHHHcCCHHHHHHHHH
Q 003557 76 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT-RPN-----AIAFGNLASTYYERGQADMAILYYK 149 (811)
Q Consensus 76 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~-----~~~~~~la~~~~~~g~~~~A~~~~~ 149 (811)
+..+-|++.+..+|+..-.|..+...+.+.++.++|.+.+++++.. ++. ...|..+-+....-|.-+...+.|+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 3455666777777777777777777777777777777777777764 222 3345445555555566666666777
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC--Cc
Q 003557 150 QAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG--LS 227 (811)
Q Consensus 150 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~ 227 (811)
+|.+.... ...|..|..+|...+++++|.++|+.+++...+....|..++..++.+++-++|...+.++++.-|. +.
T Consensus 1522 RAcqycd~-~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1522 RACQYCDA-YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHHHhcch-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 76655432 3366667777777777777777777777766666667777777777777767777777777666665 45
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 003557 228 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 290 (811)
Q Consensus 228 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (811)
......|.+-++.|+.+.+..+|+..+..+|...+.|..+...-.+.|+.+.+..+|++++.+
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 555566666666666666666666666666666666666666666666666666666666654
|
|
| >TIGR00215 lpxB lipid-A-disaccharide synthase | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.6e-10 Score=119.07 Aligned_cols=164 Identities=13% Similarity=0.065 Sum_probs=113.5
Q ss_pred CCcCCCCCCCCcEEEEec--CCC---CCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcC
Q 003557 591 PKRSDYGLPEDKFIFACF--NQL---YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTD 665 (811)
Q Consensus 591 ~~r~~~gl~~~~~~~~~~--~~~---~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~ 665 (811)
..|+.+|++++.++++.+ +|. .|+.+.++++...+.+..|+.++++.+.+......+.+.....|. ..+|.+.+
T Consensus 180 ~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~v~~~~ 258 (385)
T TIGR00215 180 SAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGP-DLQLHLID 258 (385)
T ss_pred HHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHHHhCC-CCcEEEEC
Confidence 357789998887766654 243 368899999999998889998886654333335667776777776 46777665
Q ss_pred CCChHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHHHH-H--hcCCCC---------cccc-
Q 003557 666 VAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLC-L--ATGLGE---------EMIV- 732 (811)
Q Consensus 666 ~~~~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l-~--~~g~~~---------~~v~- 732 (811)
. +....|+.+|+++-++ |++++|++++|+|+|....-+.-+...+..+ + .++++. +++.
T Consensus 259 ~----~~~~~l~aADl~V~~S----Gt~tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~ 330 (385)
T TIGR00215 259 G----DARKAMFAADAALLAS----GTAALEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQE 330 (385)
T ss_pred c----hHHHHHHhCCEEeecC----CHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCC
Confidence 3 2224678899999877 6667799999999997744333333333321 1 223332 1443
Q ss_pred -CCHHHHHHHHHHHhcCH----HHHHHHHHHHHhhc
Q 003557 733 -NSMKEYEERAVSLALDR----QKLQALTNKLKSVR 763 (811)
Q Consensus 733 -~~~~~y~~~~~~l~~d~----~~~~~~~~~~~~~~ 763 (811)
-+++...+.+.+|..|+ +.++++++.+++.+
T Consensus 331 ~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 366 (385)
T TIGR00215 331 ECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELR 366 (385)
T ss_pred CCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHH
Confidence 26889999999999999 99999998887654
|
Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-06 Score=96.73 Aligned_cols=122 Identities=15% Similarity=0.116 Sum_probs=106.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 003557 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 81 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 81 (811)
..+++.+|++.+.+.++..|+...+....|..+.+.|+.++|..+++..-...+++...+..+-.+|..++++++|..+|
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 46899999999999999999999999999999999999999998888887788888899999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 003557 82 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124 (811)
Q Consensus 82 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 124 (811)
++++..+|+ .+....+-.+|.+.+.|.+-.+.--++.+..|+
T Consensus 101 e~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk 142 (932)
T KOG2053|consen 101 ERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPK 142 (932)
T ss_pred HHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999999999 788888888888888887655554444444454
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.2e-08 Score=109.58 Aligned_cols=218 Identities=12% Similarity=0.167 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC----HHHHHHHHHHHHHcCChHHHHHH
Q 003557 40 VQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL-KPTF----PDAYLNLGNVYKALGMPQEAIMC 114 (811)
Q Consensus 40 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~ 114 (811)
-.+..+-|++.+..+|+....|..+...+.+.++.++|.+.+++++.. ++.. ..+|..+-++...-|.-+.-.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 334566788888999999999999999999999999999999999975 3332 23565555666666777888999
Q ss_pred HHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C
Q 003557 115 YQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS--H 192 (811)
Q Consensus 115 ~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~ 192 (811)
|+++.+.......+..|..+|...+++++|.++++.+++...+....|..++..+++..+-+.|..++.++++.-|. +
T Consensus 1520 FeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1520 FERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 99999987778899999999999999999999999999988888899999999999999999999999999999888 6
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 003557 193 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID 257 (811)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (811)
.+.....+.+-++.|+.+.+..+|+..+...|.-.+.|+-+...-.+.|+.+.+..+|++++.+.
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 78888999999999999999999999999999999999999999999999999999999998875
|
|
| >KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.3e-09 Score=113.59 Aligned_cols=186 Identities=13% Similarity=0.090 Sum_probs=146.0
Q ss_pred CCCcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhc-----CCeEEEeecCC-h-----hh---HHHHHHHHHH
Q 003557 590 QPKRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRV-----PNSALWLLRFP-A-----AG---EMRLRAYAVA 653 (811)
Q Consensus 590 ~~~r~~~gl~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~-----p~~~l~l~~~~-~-----~~---~~~l~~~~~~ 653 (811)
.+.|...|+....+.|.++|+.. |...-.+.++.+..... +.-++.+.|+. . .. ...+++.+.+
T Consensus 261 ~~~r~~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~ 340 (495)
T KOG0853|consen 261 LPVRLYRGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEE 340 (495)
T ss_pred cccceeeeecccceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHH
Confidence 34667778888789999999775 88888888888887777 44577777622 1 10 2478889999
Q ss_pred cCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcc-cccCCccccchhHHHHHhcCCCCccc
Q 003557 654 QGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMI-TLPLEKMATRVAGSLCLATGLGEEMI 731 (811)
Q Consensus 654 ~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvv-t~~g~~~~~r~~~~~l~~~g~~~~~v 731 (811)
.++..+.|.|+...+..+-+.++..+.+.+-+...+. |.|++|||++|+||| |-.|++...-+. |.++.++
T Consensus 341 ~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~-------~~tG~l~ 413 (495)
T KOG0853|consen 341 YDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVH-------GVTGLLI 413 (495)
T ss_pred hCccCceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEc-------CCcceee
Confidence 9997688999998777777777788888887766677 999999999999999 666766666555 6777455
Q ss_pred cCCHH---HHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 003557 732 VNSMK---EYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 784 (811)
Q Consensus 732 ~~~~~---~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 784 (811)
..+.+ .+.+..+++.+||+.+.+|+++.++++.. .|+++.|.+++......
T Consensus 414 dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e--~fs~~~~~~ri~~~~~~ 467 (495)
T KOG0853|consen 414 DPGQEAVAELADALLKLRRDPELWARMGKNGLKRVKE--MFSWQHYSERIASVLGK 467 (495)
T ss_pred CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHhHh
Confidence 55555 49999999999999999999999999844 69998888888777663
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.6e-09 Score=112.51 Aligned_cols=109 Identities=20% Similarity=0.265 Sum_probs=99.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC
Q 003557 230 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 309 (811)
Q Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 309 (811)
+...|..++..|++++|+.+|+++++.+|++..++..+|.++...|++++|+..++++++++|+++.+++.+|.+|..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 34567888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 003557 310 HVEAAIKSYKQALLLRPDFPEATCNLLHT 338 (811)
Q Consensus 310 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 338 (811)
++++|+..|+++++++|++..+...+..+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999998876655443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.6e-07 Score=88.22 Aligned_cols=159 Identities=18% Similarity=0.150 Sum_probs=92.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHH----c
Q 003557 165 LGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ----Q 240 (811)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~ 240 (811)
-+.++...|++++|++...+. .+.++...-..++.+..+.+-|.+.++++.+.+.+ .++..||..+.+ .
T Consensus 114 aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGG 186 (299)
T ss_pred hhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccc
Confidence 344445555555555444331 22233333344444555555555555555444332 222223333322 2
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHH-HHHHH
Q 003557 241 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAA-IKSYK 319 (811)
Q Consensus 241 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~ 319 (811)
+++.+|.-+|++.-+..+..+..+..++.+...+|++++|...++.++..++++++++.++..+-...|...++ .+...
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 45677777777777766667777777777777777777777777777777777777777777777777766554 34455
Q ss_pred HHHhcCCCChH
Q 003557 320 QALLLRPDFPE 330 (811)
Q Consensus 320 ~al~~~p~~~~ 330 (811)
+.....|+++-
T Consensus 267 QLk~~~p~h~~ 277 (299)
T KOG3081|consen 267 QLKLSHPEHPF 277 (299)
T ss_pred HHHhcCCcchH
Confidence 55566666654
|
|
| >PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.3e-09 Score=122.59 Aligned_cols=174 Identities=11% Similarity=0.110 Sum_probs=129.6
Q ss_pred CcEEEEecCCCC--CCCHHHHHHHHHHHhhcCCeE----EEeec-----CChhhHHHHHHHHHHcC--CCCCc-------
Q 003557 601 DKFIFACFNQLY--KMDPEIFNTWCNILRRVPNSA----LWLLR-----FPAAGEMRLRAYAVAQG--VQPDQ------- 660 (811)
Q Consensus 601 ~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~----l~l~~-----~~~~~~~~l~~~~~~~g--i~~~r------- 660 (811)
+..++.++.|+. |+.+..+++|.++++..|+.+ |++++ .++. .+.+++.+.+.+ |. ++
T Consensus 278 ~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~-y~~l~~~v~~l~g~In-~~~g~~~~~ 355 (797)
T PLN03063 278 GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPE-YQKLKSQVHELVGRIN-GRFGSVSSV 355 (797)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHH-HHHHHHHHHHHHHHhh-cccccCCCc
Confidence 456777888774 999999999999999999853 33333 2222 456777777664 42 22
Q ss_pred -eEEcC-CCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCC----cccccCCccccchhHHHHHhcCCCCccc--
Q 003557 661 -IIFTD-VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLP----MITLPLEKMATRVAGSLCLATGLGEEMI-- 731 (811)
Q Consensus 661 -v~~~~-~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~P----vvt~~g~~~~~r~~~~~l~~~g~~~~~v-- 731 (811)
|++.+ ..+..+..++|+.+||||.|+.++| +++++|||++|+| +| .|.+++.. ..+|-.. ++
T Consensus 356 pv~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlV-------lSe~~G~~-~~l~~~a-llVn 426 (797)
T PLN03063 356 PIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLV-------LSEFAGAG-QSLGAGA-LLVN 426 (797)
T ss_pred eeEEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEE-------eeCCcCch-hhhcCCe-EEEC
Confidence 33333 5688999999999999999999999 9999999999998 55 34444110 0123233 33
Q ss_pred cCCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHH
Q 003557 732 VNSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 788 (811)
Q Consensus 732 ~~~~~~y~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 788 (811)
..|+++.++++.++.+ +++.++...+.+++.+.. +|...+++.+.+.+.++++.
T Consensus 427 P~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~---~~~~~Wa~~fl~~l~~~~~~ 481 (797)
T PLN03063 427 PWNITEVSSAIKEALNMSDEERETRHRHNFQYVKT---HSAQKWADDFMSELNDIIVE 481 (797)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhh---CCHHHHHHHHHHHHHHHhhh
Confidence 3589999999988888 788888888888887654 89999999999999988864
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.1e-08 Score=95.79 Aligned_cols=174 Identities=22% Similarity=0.234 Sum_probs=112.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHH
Q 003557 23 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF---AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP---DAYL 96 (811)
Q Consensus 23 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 96 (811)
.+..++..|..++..|++.+|+..|++++...|.. ..+.+.+|.+++..|++++|+..+++.++..|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46788899999999999999999999999987765 67889999999999999999999999999988765 4777
Q ss_pred HHHHHHHHcC-----------ChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 003557 97 NLGNVYKALG-----------MPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNL 165 (811)
Q Consensus 97 ~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 165 (811)
.+|.++.... ...+|+..|+..++..|++... .+|...+..+.+ .-..--+.+
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~-------------~~A~~~l~~l~~---~la~~e~~i 147 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA-------------EEAKKRLAELRN---RLAEHELYI 147 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH-------------HHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH-------------HHHHHHHHHHHH---HHHHHHHHH
Confidence 8887765542 2346666777777666662111 111111111110 011223456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHcCChHHH
Q 003557 166 GNALKDVGRVDEAIQCYNQCLSLQPSHP---QALTNLGNIYMEWNMLPAA 212 (811)
Q Consensus 166 a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A 212 (811)
|..|.+.|.+..|+..++.+++..|+.. +++..++..|...|..+.|
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 6777777777777777777777777654 3556666666666665533
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.4e-09 Score=109.69 Aligned_cols=113 Identities=12% Similarity=0.201 Sum_probs=96.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 003557 196 LTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG 275 (811)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 275 (811)
+...|..++..|++++|+..|+++++.+|.+..++..+|.+|...|++++|+..++++++++|.++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 34557777788888888888888888888888888888888889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhC
Q 003557 276 RVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 308 (811)
Q Consensus 276 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 308 (811)
++++|+..|+++++++|++..+...++.+..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998888877765554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.4e-07 Score=86.18 Aligned_cols=254 Identities=17% Similarity=0.074 Sum_probs=190.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHH
Q 003557 31 GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQE 110 (811)
Q Consensus 31 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 110 (811)
.+-++-.|+|..++..-.+.-... ...+....+.+.|..+|++..-+......- .....+...++.....-++.++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence 345566799999988877765443 667778888889999998876554443332 1223455666666666666666
Q ss_pred HHHHHHHHHhh-CCC--hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003557 111 AIMCYQRAVQT-RPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 187 (811)
Q Consensus 111 A~~~~~~al~~-~p~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 187 (811)
-+.-..+.+.. .-. ......-+.+|...|++++|++..... .+.++...-..++.++.+.+-|.+.++++.+
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55554444433 222 345556678899999999999988773 3455666667888999999999999999988
Q ss_pred cCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 003557 188 LQPSHPQALTNLGNIYME----WNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADG 263 (811)
Q Consensus 188 ~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 263 (811)
.+.+ .++..|+..+.. .+++.+|.-+|++.-+..+..+...+.++.+...+|++++|...++.++..+++++++
T Consensus 166 ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 166 IDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred cchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 8654 344445555443 4568999999999999889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHH-HHHHHHhcCCCcH
Q 003557 264 LVNRGNTYKEIGRVTDAIQ-DYIRAITIRPTMA 295 (811)
Q Consensus 264 ~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~ 295 (811)
+.++..+-...|...++.+ .+.+....+|+++
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 9999999999998877665 4455556677766
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.1e-08 Score=98.62 Aligned_cols=120 Identities=21% Similarity=0.154 Sum_probs=98.3
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHH
Q 003557 5 RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG---DLNRALQYY 81 (811)
Q Consensus 5 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~ 81 (811)
+.++.+.-++.-+..+|++.+-|..||.+|+.+|++..|...|.+++++.|++++.+..+|.+++... ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 35666777777888888888888888888888888888888888888888888888888888776653 456788888
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 003557 82 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124 (811)
Q Consensus 82 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 124 (811)
+++++.+|.+..+.+.||..++..|++.+|...++.+++..|.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 8888888888888888888888888888888888888887765
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.2e-08 Score=96.76 Aligned_cols=167 Identities=15% Similarity=0.035 Sum_probs=122.2
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcC---
Q 003557 2 RKGRLNEAAQCCRQALALNPLLVDAH---SNLGNLMKAQGLVQEAYSCYLEALRIQPTF---AIAWSNLAGLFMESG--- 72 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~~~~---~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g--- 72 (811)
++|+|++|++.|++++...|....+. +.+|.++++.+++++|+..+++.++.+|++ +.+++.+|.++...+
T Consensus 44 ~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~ 123 (243)
T PRK10866 44 QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSA 123 (243)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhh
Confidence 57999999999999999999876554 899999999999999999999999998886 678899998864443
Q ss_pred ------------C---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHH
Q 003557 73 ------------D---LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYY 136 (811)
Q Consensus 73 ------------~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~ 136 (811)
+ ..+|+..|++.++..|+...+- +|...+..+ ... ..--..+|..|.
T Consensus 124 ~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~--------------~A~~rl~~l---~~~la~~e~~ia~~Y~ 186 (243)
T PRK10866 124 LQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT--------------DATKRLVFL---KDRLAKYELSVAEYYT 186 (243)
T ss_pred hhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH--------------HHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 1 3578899999999999874321 111111111 000 222235677777
Q ss_pred HcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003557 137 ERGQADMAILYYKQAIGCDPRF---LEAYNNLGNALKDVGRVDEAIQCYNQC 185 (811)
Q Consensus 137 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a 185 (811)
+.|.+..|+.-++.+++..|+. .+++..++..|..+|..++|.+.....
T Consensus 187 ~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 187 KRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 7777877887777777776653 456777777788888877777765443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3e-06 Score=85.12 Aligned_cols=220 Identities=28% Similarity=0.406 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCC-hhHHHhHHHHHHHcCCHHHHHHH
Q 003557 73 DLNRALQYYKEAVKLKPT--FPDAYLNLGNVYKALGMPQEAIMCYQRAVQ--TRPN-AIAFGNLASTYYERGQADMAILY 147 (811)
Q Consensus 73 ~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~-~~~~~~la~~~~~~g~~~~A~~~ 147 (811)
.+..+...+...+...+. ........+..+...+.+..+...+..... ..+. ...+...+..+...+++.+++..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333444444444443333 233444444444444444444444444443 2222 44444444444444444444444
Q ss_pred HHHHHHcCCCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Q 003557 148 YKQAIGCDPRFLEAYNNLGN-ALKDVGRVDEAIQCYNQCLSLQPS---HPQALTNLGNIYMEWNMLPAAASYYKATLAVT 223 (811)
Q Consensus 148 ~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 223 (811)
+.+++...+.........+. ++...|++++|...+++++...|. ........+..+...++++++...+.+++...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 197 (291)
T COG0457 118 LEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN 197 (291)
T ss_pred HHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC
Confidence 44444444333222233333 445555555555555555443331 22223333333333444444444444444444
Q ss_pred CC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 003557 224 TG-LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 292 (811)
Q Consensus 224 ~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 292 (811)
+. ....+..++..+...+++++|...+..++...|.....+...+..+...++++++...+.+.+...|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 198 PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 33 3334444444444444444444444444444443333333333333333334444444444444443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.4e-06 Score=84.65 Aligned_cols=238 Identities=31% Similarity=0.461 Sum_probs=194.4
Q ss_pred CCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHH
Q 003557 22 LLVDAHSNLGNLMKA-QGLVQEAYSCYLEALRIQPT--FAIAWSNLAGLFMESGDLNRALQYYKEAVK--LKPTFPDAYL 96 (811)
Q Consensus 22 ~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~ 96 (811)
.........+..... .+.+..+...+...+...+. ........+..+...+++..+...+..... ..+.....+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (291)
T COG0457 20 AEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALL 99 (291)
T ss_pred hhHHHHHHhhhhhhHHHhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHH
Confidence 333333333333333 47778888888888887776 367888888899999999999999999887 6777788899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHH-HHHHcCCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHH
Q 003557 97 NLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLAS-TYYERGQADMAILYYKQAIGCDP---RFLEAYNNLGNALKD 171 (811)
Q Consensus 97 ~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~ 171 (811)
..+..+...+++.+++..+.++....+. ......... ++...|++++|...+.+++...| .....+...+..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (291)
T COG0457 100 NLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEA 179 (291)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH
Confidence 9999999999999999999999887766 344444455 88999999999999999988766 355566677777888
Q ss_pred cCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHH
Q 003557 172 VGRVDEAIQCYNQCLSLQPS-HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 250 (811)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (811)
.+++++|+..+.+++...+. ....+..++..+...+++++|...+..++...|.....+..++..+...+.++++...+
T Consensus 180 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (291)
T COG0457 180 LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEAL 259 (291)
T ss_pred hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHH
Confidence 89999999999999999988 68899999999999999999999999999998887777777888877777899999999
Q ss_pred HHHHhcCCC
Q 003557 251 NEVLRIDPL 259 (811)
Q Consensus 251 ~~al~~~p~ 259 (811)
.+.+...|.
T Consensus 260 ~~~~~~~~~ 268 (291)
T COG0457 260 EKALELDPD 268 (291)
T ss_pred HHHHHhCcc
Confidence 999998886
|
|
| >PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.8e-09 Score=122.66 Aligned_cols=176 Identities=13% Similarity=0.135 Sum_probs=126.3
Q ss_pred CCcEEEEecCCCC--CCCHHHHHHHHHHHhhcCC----eEEEeecCCh----hhHHHHHHHHHHc--------CC-CC-C
Q 003557 600 EDKFIFACFNQLY--KMDPEIFNTWCNILRRVPN----SALWLLRFPA----AGEMRLRAYAVAQ--------GV-QP-D 659 (811)
Q Consensus 600 ~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~l~~~~~----~~~~~l~~~~~~~--------gi-~~-~ 659 (811)
.+..++++++|+. |+.+..++++.++++..|+ .+|+++|.+. ...+.+++.+.+. |. +- .
T Consensus 263 ~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~p 342 (726)
T PRK14501 263 RGRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTP 342 (726)
T ss_pred CCCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcce
Confidence 3567888999885 9999999999999999996 6788886331 1134555555443 22 11 1
Q ss_pred ceEEcCCCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHh-----CCCcccccCCccccchhHH-HHHhcCCCCccc-
Q 003557 660 QIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWA-----GLPMITLPLEKMATRVAGS-LCLATGLGEEMI- 731 (811)
Q Consensus 660 rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~-----g~Pvvt~~g~~~~~r~~~~-~l~~~g~~~~~v- 731 (811)
.+.|.|..+..+..++|+.+||||.|+..+| |++++|||++ |+|||+- ..|++ -+.. |+ +|
T Consensus 343 v~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~-------~~G~~~~l~~-~l---lv~ 411 (726)
T PRK14501 343 IHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSE-------MAGAAAELAE-AL---LVN 411 (726)
T ss_pred EEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEec-------ccchhHHhCc-Ce---EEC
Confidence 2457778899999999999999999999999 9999999999 4566632 22211 1110 22 22
Q ss_pred cCCHHHHHHHHHHHhcCH-HHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHH
Q 003557 732 VNSMKEYEERAVSLALDR-QKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLH 789 (811)
Q Consensus 732 ~~~~~~y~~~~~~l~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~ 789 (811)
..|++++++++.++.+++ +.+....+++++.+. .||...+++++.+.|.+++...
T Consensus 412 P~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~---~~~~~~w~~~~l~~l~~~~~~~ 467 (726)
T PRK14501 412 PNDIEGIAAAIKRALEMPEEEQRERMQAMQERLR---RYDVHKWASDFLDELREAAEKN 467 (726)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHhhh
Confidence 358999999999988753 444444456777653 3999999999999999998754
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-08 Score=89.42 Aligned_cols=105 Identities=22% Similarity=0.378 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc---HHHHHHH
Q 003557 228 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM---AEAHANL 301 (811)
Q Consensus 228 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 301 (811)
..++.+|..+...|++++|++.|+++++.+|++ ..+++.+|.++...|++++|+..|++++..+|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456778888888888888888888888877765 5678888888888888888888888888887764 5678888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCChHHH
Q 003557 302 ASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 332 (811)
Q Consensus 302 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 332 (811)
|.++.+.|++++|..+++++++..|++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8888888888888888888888888876544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.6e-09 Score=114.62 Aligned_cols=124 Identities=11% Similarity=0.015 Sum_probs=83.8
Q ss_pred eEEcC-CCC------hHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccc-
Q 003557 661 IIFTD-VAM------KQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI- 731 (811)
Q Consensus 661 v~~~~-~~~------~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v- 731 (811)
|+|.| ..+ ..++...+..||+|+.|+.|+| |.|.+|||+||+||||.....+..=+- .+...-+-...+|
T Consensus 450 vif~P~~L~~~~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~ 528 (590)
T cd03793 450 VVFHPEFLSSTNPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIV 528 (590)
T ss_pred EEEcccccCCCCCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEe
Confidence 78887 332 2345667899999999999999 999999999999999877655521111 1111000011123
Q ss_pred -------cCCHHHHHHHHHHHhcCHHHHHHHHHHHH-hhcccCCCCChHHHHHHHHHHHHHHHHH
Q 003557 732 -------VNSMKEYEERAVSLALDRQKLQALTNKLK-SVRLTCPLFDTARWVKNLERSYFKMWSL 788 (811)
Q Consensus 732 -------~~~~~~y~~~~~~l~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 788 (811)
..+.+++.+.+.++++. ..++.+.++.+ ++. +..|+++.+++...++|..++++
T Consensus 529 ~r~~~~~~e~v~~La~~m~~~~~~-~~r~~~~~r~~~~r~--s~~f~W~~~~~~Y~~A~~~Al~~ 590 (590)
T cd03793 529 DRRFKSPDESVQQLTQYMYEFCQL-SRRQRIIQRNRTERL--SDLLDWRNLGRYYRKARQLALSR 590 (590)
T ss_pred cCCccchHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHHHhhC
Confidence 34677888888888754 55555555443 223 56799999999999999988753
|
GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.9e-07 Score=99.01 Aligned_cols=183 Identities=18% Similarity=0.264 Sum_probs=100.5
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003557 11 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT 90 (811)
Q Consensus 11 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 90 (811)
+.++++.+ +|+.. -...+....+.|..++|..+|++.-+ +-.+-..|...|.+++|.++.+.--.+.
T Consensus 790 RAlR~a~q-~~~e~--eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH-- 856 (1416)
T KOG3617|consen 790 RALRRAQQ-NGEED--EAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH-- 856 (1416)
T ss_pred HHHHHHHh-CCcch--hhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee--
Confidence 34455543 33322 23445566677888888888877643 2334455666777777766655432222
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHH----------HhhCCC-----------hhHHHhHHHHHHHcCCHHHHHHHHH
Q 003557 91 FPDAYLNLGNVYKALGMPQEAIMCYQRA----------VQTRPN-----------AIAFGNLASTYYERGQADMAILYYK 149 (811)
Q Consensus 91 ~~~~~~~la~~~~~~g~~~~A~~~~~~a----------l~~~p~-----------~~~~~~la~~~~~~g~~~~A~~~~~ 149 (811)
--..|++.+..+...++.+.|+++|+++ +..+|. ...|...|..+...|+.+.|+.+|.
T Consensus 857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 1235667777777777777777777653 222332 3455566777777777777777777
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003557 150 QAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219 (811)
Q Consensus 150 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 219 (811)
.+- -|+.+..+.+-+|+.++|-.+-++ ..+..+.+.+|+.|...|++.+|+..|.++
T Consensus 937 ~A~--------D~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 937 SAK--------DYFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred Hhh--------hhhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 653 234444444445555555443332 233444445555555555555555544443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.4e-06 Score=91.89 Aligned_cols=290 Identities=21% Similarity=0.258 Sum_probs=194.0
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------HHH---hCCCcHHHHHHHHHHHHHc
Q 003557 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE--------ALR---IQPTFAIAWSNLAGLFMES 71 (811)
Q Consensus 3 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~--------al~---~~p~~~~~~~~la~~~~~~ 71 (811)
.|+.+.|.+.++-+- +...|-.++....+..+.+-|.-++-. +++ .+|++ .-...+.+..++
T Consensus 741 iG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e--~eakvAvLAieL 813 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE--DEAKVAVLAIEL 813 (1416)
T ss_pred eccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc--hhhHHHHHHHHH
Confidence 466777766665442 345788888888877777766655432 122 23332 333456667788
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHH
Q 003557 72 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQA 151 (811)
Q Consensus 72 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~a 151 (811)
|..++|+.+|++... +-.+-..|...|.+++|.+..+.--.+. --..|++.+..+...++.+.|+++|+++
T Consensus 814 gMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH-LRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred hhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee-hhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 999999999988754 3455677888999999887765321110 0567888888888999999999999875
Q ss_pred ----------HHcCCC----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHH
Q 003557 152 ----------IGCDPR----------FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 211 (811)
Q Consensus 152 ----------l~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 211 (811)
+..+|. +...|...|..+...|+.+.|+.+|..+- -|+.+..+.+-+|+.++
T Consensus 885 ~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------D~fs~VrI~C~qGk~~k 956 (1416)
T KOG3617|consen 885 GVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK--------DYFSMVRIKCIQGKTDK 956 (1416)
T ss_pred CChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------hhhhheeeEeeccCchH
Confidence 222332 23455666777777888888888887643 35667777777888888
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCC-C-------------HHHHHHHHHHH
Q 003557 212 AASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI------DPL-A-------------ADGLVNRGNTY 271 (811)
Q Consensus 212 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~-~-------------~~~~~~la~~~ 271 (811)
|-.+.++ ..+..+.+.+|..|...|+..+|+.+|.++-.. ..+ + ..-....+..|
T Consensus 957 Aa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYy 1031 (1416)
T KOG3617|consen 957 AARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYY 1031 (1416)
T ss_pred HHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHH
Confidence 8776554 456677899999999999999999999887433 111 1 11122334455
Q ss_pred HHhC-CHHHHHHHHHHH------Hh-----------------cCC-CcHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 003557 272 KEIG-RVTDAIQDYIRA------IT-----------------IRP-TMAEAHANLASAYKDSGHVEAAIKSYKQA 321 (811)
Q Consensus 272 ~~~g-~~~~A~~~~~~a------l~-----------------~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 321 (811)
...| +.+.|..+|.++ ++ ++| .++..+..-+..+....+|++|...+-.+
T Consensus 1032 Ee~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1032 EELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5555 666666655543 21 123 46778888899999999999998765443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-07 Score=86.81 Aligned_cols=101 Identities=18% Similarity=0.167 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHH
Q 003557 59 IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYE 137 (811)
Q Consensus 59 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~ 137 (811)
..++..|..|-..|-+.-|...|.+++.+.|+-+++++.+|..+...|+++.|.+.|+..++++|. ..+..+.|..++.
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY 145 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 145 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee
Confidence 344455555555555566666666666666666666666666666666666666666666666665 5555555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCcH
Q 003557 138 RGQADMAILYYKQAIGCDPRFL 159 (811)
Q Consensus 138 ~g~~~~A~~~~~~al~~~p~~~ 159 (811)
-|++.-|.+-+.+..+.+|+++
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCCh
Confidence 6666666666665555555554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.6e-07 Score=91.71 Aligned_cols=81 Identities=26% Similarity=0.248 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---HHHHH
Q 003557 92 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL---EAYNN 164 (811)
Q Consensus 92 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~ 164 (811)
+..++..|..+...|++.+|+..|+++....|. ..+...++.+++..|++++|+..+++.++..|++. .+++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 456667777777777777777777777776665 55666777777777777777777777776666543 35566
Q ss_pred HHHHHHHc
Q 003557 165 LGNALKDV 172 (811)
Q Consensus 165 la~~~~~~ 172 (811)
+|.++...
T Consensus 85 ~g~~~~~~ 92 (203)
T PF13525_consen 85 LGLSYYKQ 92 (203)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66655443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5e-08 Score=96.07 Aligned_cols=122 Identities=20% Similarity=0.192 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC---CHHHHHHHHH
Q 003557 209 LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG---RVTDAIQDYI 285 (811)
Q Consensus 209 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~ 285 (811)
.++.+.-++.-+..+|++.+.|..||.+|..+|++..|...|.+++++.|++++.+..+|.++.... ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4555666777888899999999999999999999999999999999999999999999999887653 4678999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChH
Q 003557 286 RAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 330 (811)
Q Consensus 286 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 330 (811)
++++.+|++..+.+.||..++..|++.+|...++.+++..|.+..
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999999887654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.9e-09 Score=81.15 Aligned_cols=67 Identities=37% Similarity=0.535 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhcCC
Q 003557 260 AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG-HVEAAIKSYKQALLLRP 326 (811)
Q Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 326 (811)
++..|..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56788888888888888888888888888888888888888888888888 68888888888888887
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-05 Score=81.21 Aligned_cols=282 Identities=15% Similarity=0.054 Sum_probs=116.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHH
Q 003557 36 AQGLVQEAYSCYLEALRIQPTF--AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIM 113 (811)
Q Consensus 36 ~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 113 (811)
-.|+-..|.+.-.+.-++-..+ +.++..-++.-.-.|+++.|.+-|+.++..-....-.+..|-.--...|..+.|+.
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHH
Confidence 3444444444444443221111 23333334444445555555555555442210000011122222234455555555
Q ss_pred HHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHH---HHHHHHHHH-HHcCCHHHHHHHHHHH
Q 003557 114 CYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGC---DPRFLE---AYNNLGNAL-KDVGRVDEAIQCYNQC 185 (811)
Q Consensus 114 ~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~---~~~~la~~~-~~~g~~~~A~~~~~~a 185 (811)
+-+++....|. ..++...-...+..|+++.|+++.+..... .++..+ +-..-+... .-.-+...|...-.++
T Consensus 176 yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a 255 (531)
T COG3898 176 YAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA 255 (531)
T ss_pred HHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 55555555555 444444444455555555555555443311 111111 000001110 1112344445555555
Q ss_pred HhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHH---HHhcCCCCHH
Q 003557 186 LSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE---VLRIDPLAAD 262 (811)
Q Consensus 186 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~---al~~~p~~~~ 262 (811)
.++.|+....-..-+..+++.|+..++-.+++.+.+..|.- .++..|....--+.++.-+++ ...+.|++.+
T Consensus 256 ~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-----~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnae 330 (531)
T COG3898 256 NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-----DIALLYVRARSGDTALDRLKRAKKLESLKPNNAE 330 (531)
T ss_pred hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-----HHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchH
Confidence 55555554444445555555555555555555555444321 122222222222222222222 2233455555
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhC-CCHHHHHHHHHHHHh
Q 003557 263 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS-GHVEAAIKSYKQALL 323 (811)
Q Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 323 (811)
.....+..-...|++..|..--+.+....|... ++..|+.+-... |+-.+...++-++++
T Consensus 331 s~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 331 SSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 555555555555555555555555555544422 344444444333 555555555544443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.8e-08 Score=91.82 Aligned_cols=118 Identities=28% Similarity=0.344 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 003557 22 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF---AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNL 98 (811)
Q Consensus 22 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 98 (811)
.....++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..++++++..|++...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 455667777777777778888887777777765542 45777777777777777777777777777777777777777
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 003557 99 GNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRF 158 (811)
Q Consensus 99 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 158 (811)
|.++...|+...+...+++++. .+++|++.+++++..+|++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~-------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA-------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH-------------------HHHHHHHHHHHHHhhCchh
Confidence 7777777776666655554432 2456666666666666654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.2e-07 Score=95.93 Aligned_cols=127 Identities=20% Similarity=0.246 Sum_probs=63.4
Q ss_pred HHHHHHHc-CChHHHHHHHHHHHhccCCC------chHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----C---HHHH
Q 003557 199 LGNIYMEW-NMLPAAASYYKATLAVTTGL------SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL----A---ADGL 264 (811)
Q Consensus 199 la~~~~~~-g~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~---~~~~ 264 (811)
+|.+|... |++++|+++|+++.+..... ...+..++.++.+.|+|++|++.|++.....-+ . ...+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 44444444 55555555555554432111 123445666666666777777777666543211 0 1234
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHh--CCCHHHHHHHHHHHHhcC
Q 003557 265 VNRGNTYKEIGRVTDAIQDYIRAITIRPTM-----AEAHANLASAYKD--SGHVEAAIKSYKQALLLR 325 (811)
Q Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~ 325 (811)
...+.++...|+...|.+.+++....+|.. ......|..++.. ...+++|+.-|++...++
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 555666666777777777777777666532 2334444444443 335556666655554443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.9e-08 Score=83.66 Aligned_cols=98 Identities=35% Similarity=0.618 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhC
Q 003557 229 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 308 (811)
Q Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 308 (811)
.++.+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|++.+++++...|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 35667777778888888888888888888877778888888888888888888888888888888777888888888888
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 003557 309 GHVEAAIKSYKQALLLRP 326 (811)
Q Consensus 309 g~~~~A~~~~~~al~~~p 326 (811)
|++++|...++++++..|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 888888888888877766
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-07 Score=90.31 Aligned_cols=93 Identities=24% Similarity=0.311 Sum_probs=52.1
Q ss_pred hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 003557 125 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF---LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGN 201 (811)
Q Consensus 125 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 201 (811)
...++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..++++++..|++...+..+|.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3445555555555555555555555555444332 2455566666666666666666666666666665555555666
Q ss_pred HHHHcCChHHHHHHHH
Q 003557 202 IYMEWNMLPAAASYYK 217 (811)
Q Consensus 202 ~~~~~g~~~~A~~~~~ 217 (811)
++...|+...+...++
T Consensus 115 ~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 115 IYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHcCChHhHhhCHH
Confidence 6555555554444433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.4e-08 Score=86.33 Aligned_cols=102 Identities=22% Similarity=0.256 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhccCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHH
Q 003557 195 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGL---SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---ADGLVNRG 268 (811)
Q Consensus 195 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la 268 (811)
.++.+|..+...|++++|.+.|++++...|++ ..+++.+|.++...|++++|+..|++++..+|++ ..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 33444444444444444444444444444433 2344455555555555555555555555554443 34555555
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcHH
Q 003557 269 NTYKEIGRVTDAIQDYIRAITIRPTMAE 296 (811)
Q Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 296 (811)
.++.+.|++++|+..++++++..|++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 5555555555555555555555555543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-05 Score=79.94 Aligned_cols=280 Identities=15% Similarity=0.058 Sum_probs=214.1
Q ss_pred CCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHH
Q 003557 3 KGRLNEAAQCCRQALALNPLL--VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF-AIAWSNLAGLFMESGDLNRALQ 79 (811)
Q Consensus 3 ~g~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~ 79 (811)
.|+-..|.+.-.+.-+.-..+ +-.+..-++.-.-.|+++.|.+-|+.++. +|+. ...+..|-.-....|..+.|+.
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHH
Confidence 466777777777765443333 34455567777889999999999999875 3432 2223333333456899999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh---CCC------hhHHHhHHHHHHHcCCHHHHHHHHHH
Q 003557 80 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT---RPN------AIAFGNLASTYYERGQADMAILYYKQ 150 (811)
Q Consensus 80 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~------~~~~~~la~~~~~~g~~~~A~~~~~~ 150 (811)
+-+.+....|.-+.++...-...+..|+++.|+++.+...+. .++ ...+...+... -..+...|...-.+
T Consensus 176 yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~ 254 (531)
T COG3898 176 YAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALE 254 (531)
T ss_pred HHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHH
Confidence 999999999999999999999999999999999999877653 333 11222222222 23467889999999
Q ss_pred HHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHH---HHHhccCCCc
Q 003557 151 AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYK---ATLAVTTGLS 227 (811)
Q Consensus 151 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~---~~l~~~~~~~ 227 (811)
+.++.|+....-..-+..+++.|+..++-.+++.+.+..|. ++ ++.+|....--+.++.-++ +...+.|++.
T Consensus 255 a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~----ia~lY~~ar~gdta~dRlkRa~~L~slk~nna 329 (531)
T COG3898 255 ANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PD----IALLYVRARSGDTALDRLKRAKKLESLKPNNA 329 (531)
T ss_pred HhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hH----HHHHHHHhcCCCcHHHHHHHHHHHHhcCccch
Confidence 99999999999999999999999999999999999998876 32 3445555444444554444 4456689999
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhc
Q 003557 228 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI-GRVTDAIQDYIRAITI 290 (811)
Q Consensus 228 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 290 (811)
+.....+..-+..|++..|..--+.+....|. ..++..++.+-... |+-.++..++.++++-
T Consensus 330 es~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 330 ESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 99999999999999999999999999888875 45677788887766 9999999999999875
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-07 Score=87.08 Aligned_cols=220 Identities=17% Similarity=0.115 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 003557 93 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKD 171 (811)
Q Consensus 93 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 171 (811)
..++..|..|-..|-+.-|...|.+++.+.|+ +.+++.+|..+...|+++.|.+.|+..++++|.+.-+..+.|..+..
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY 145 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 145 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee
Confidence 34566667777777777777777777777777 77777777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHH
Q 003557 172 VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYN 251 (811)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (811)
-|++.-|.+-+.+..+.+|++|.--..+-.. ...-+..+|..-+.+-.+...+....|+.. ..|...=.-+.+.+-..
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV-~~yLgkiS~e~l~~~~~ 223 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKEQWGWNIV-EFYLGKISEETLMERLK 223 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHhhhhHHHH-HHHHhhccHHHHHHHHH
Confidence 7777777777777777777776422211111 122344555544333222222111222211 11111111122222222
Q ss_pred HHHhcC----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHhCCCHHHH
Q 003557 252 EVLRID----PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM----AEAHANLASAYKDSGHVEAA 314 (811)
Q Consensus 252 ~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A 314 (811)
.--+.+ ..-.++++.+|..+...|+.++|...|+-++..+--+ .-+...++.+.....+.+++
T Consensus 224 a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~~~l~~~ 294 (297)
T COG4785 224 ADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQDDLAES 294 (297)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccchhhhh
Confidence 111111 1124567777777777777777777777777654322 23445555555555444443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.5e-08 Score=97.66 Aligned_cols=126 Identities=15% Similarity=0.193 Sum_probs=96.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC----C-----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHH
Q 003557 233 LAVIYKQQGNYADAISCYNEVLRIDP----L-----------AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA 297 (811)
Q Consensus 233 la~~~~~~g~~~~A~~~~~~al~~~p----~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 297 (811)
-|..|++.|+|..|...|++++..-. . -..++.+++.++.+++++.+|+..+.++++++|+|..+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH
Confidence 35555555555555555555544311 0 12378899999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHHHHHhc
Q 003557 298 HANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVN 364 (811)
Q Consensus 298 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l~~~~~~ 364 (811)
++..|.++..+|+++.|+..|++++++.|+|..+...+..+..+.. +..+.-.+++.+|..
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~------~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR------EYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999888887776633 333344556666653
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.7e-08 Score=90.77 Aligned_cols=101 Identities=27% Similarity=0.377 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 003557 229 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAY 305 (811)
Q Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 305 (811)
.++.+|.++...|++++|+..|++++.+.++. +.++.++|.++...|++++|++.++++++++|.....+.+++.++
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 34455555555555555555555555544332 235555555555555555555555555555555555555555555
Q ss_pred H-------hCCCHH-------HHHHHHHHHHhcCCCCh
Q 003557 306 K-------DSGHVE-------AAIKSYKQALLLRPDFP 329 (811)
Q Consensus 306 ~-------~~g~~~-------~A~~~~~~al~~~p~~~ 329 (811)
. ..|+++ +|..+|++++..+|++.
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 5 555544 66666777777787654
|
|
| >cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.7e-08 Score=106.72 Aligned_cols=160 Identities=10% Similarity=0.036 Sum_probs=105.1
Q ss_pred CCcEEEEecCCCC-CCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCC
Q 003557 600 EDKFIFACFNQLY-KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 678 (811)
Q Consensus 600 ~~~~~~~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 678 (811)
.+.+++|.+++.. |...+++ .++.+..|+..|+|+|.++. ..... .... .++|+|+|..++++...+++.
T Consensus 203 ~~~~~i~y~G~l~~~~d~~ll---~~la~~~p~~~~vliG~~~~-~~~~~---~~~~--~~nV~~~G~~~~~~l~~~l~~ 273 (373)
T cd04950 203 LPRPVIGYYGAIAEWLDLELL---EALAKARPDWSFVLIGPVDV-SIDPS---ALLR--LPNVHYLGPKPYKELPAYLAG 273 (373)
T ss_pred CCCCEEEEEeccccccCHHHH---HHHHHHCCCCEEEEECCCcC-ccChh---Hhcc--CCCEEEeCCCCHHHHHHHHHh
Confidence 3456777777665 5444444 45666789999999998622 11111 1112 368999999999999999999
Q ss_pred CcEEecCCCCC-----C-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccccCCHHHHHHHHHHH-hcCHHH
Q 003557 679 ADLFLDTPLCN-----A-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSL-ALDRQK 751 (811)
Q Consensus 679 ~Dv~ld~~~~~-----g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~~~~~y~~~~~~l-~~d~~~ 751 (811)
+||++-|+..+ + ++.++|+|++|+|||+.+. + ++....+ ...++.+|++++++.+.+. ..+...
T Consensus 274 ~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~-~~~~~~~-~~~~~~~d~~~~~~ai~~~l~~~~~~ 344 (373)
T cd04950 274 FDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------P-EVRRYED-EVVLIADDPEEFVAAIEKALLEDGPA 344 (373)
T ss_pred CCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------H-HHHhhcC-cEEEeCCCHHHHHHHHHHHHhcCCch
Confidence 99999997432 2 6789999999999996542 2 2222223 1214566899999999985 444332
Q ss_pred HHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 003557 752 LQALTNKLKSVRLTCPLFDTARWVKNLERSYF 783 (811)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 783 (811)
+...+.. . ...++++..+.++++..+
T Consensus 345 ~~~~~~~---~---~~~~sW~~~a~~~~~~l~ 370 (373)
T cd04950 345 RERRRLR---L---AAQNSWDARAAEMLEALQ 370 (373)
T ss_pred HHHHHHH---H---HHHCCHHHHHHHHHHHHH
Confidence 2221111 1 123899999999886554
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.9e-08 Score=81.73 Aligned_cols=98 Identities=39% Similarity=0.571 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003557 26 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 105 (811)
Q Consensus 26 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 105 (811)
+++.+|..+...|++++|+..++++++..|.+..++..+|.++...+++++|++.++++++..|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46677888888888888888888888888877778888888888888888888888888888887777788888888888
Q ss_pred CChHHHHHHHHHHHhhCC
Q 003557 106 GMPQEAIMCYQRAVQTRP 123 (811)
Q Consensus 106 g~~~~A~~~~~~al~~~p 123 (811)
|++++|...++++++..|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 888888888887777655
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.4e-08 Score=78.68 Aligned_cols=67 Identities=33% Similarity=0.506 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 003557 23 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG-DLNRALQYYKEAVKLKP 89 (811)
Q Consensus 23 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 89 (811)
++..|..+|.+++..|++++|+..|+++++.+|+++.+++.+|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45566666666666777777777777776666666666666666666666 56666666666666655
|
... |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-05 Score=88.48 Aligned_cols=291 Identities=16% Similarity=0.062 Sum_probs=205.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHH
Q 003557 34 MKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIM 113 (811)
Q Consensus 34 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 113 (811)
....+++.+|+....+.++..|+...+....|.++.++|+.++|..+++..-...+++...+..+-.+|..+|++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 34568999999999999999999999999999999999999999988888777788888899999999999999999999
Q ss_pred HHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cCCHH---------HHHHHHH
Q 003557 114 CYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKD-VGRVD---------EAIQCYN 183 (811)
Q Consensus 114 ~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~---------~A~~~~~ 183 (811)
+|+++.+.+|+.+....+-.+|.+.+.|.+-.+.--++.+..|+++..+.....+..+ ....+ -|....+
T Consensus 99 ~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 99 LYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 9999999999988888888999999999887777777777888877654444444433 22222 3555666
Q ss_pred HHHhcC-CCCh-HHHHHHHHHHHHcCChHHHHHHHHHHH-hc-cCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003557 184 QCLSLQ-PSHP-QALTNLGNIYMEWNMLPAAASYYKATL-AV-TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL 259 (811)
Q Consensus 184 ~al~~~-p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l-~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 259 (811)
+.++.. +-.. .-....-.++..+|++++|.+.+..-+ +. .+.+...-+.-...+...+++.+-.++..+++..+++
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 666655 2211 112223356677899999999984333 33 3444444456677888899999999999999999888
Q ss_pred CHHHHHH-------------HHHHHHHhCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 003557 260 AADGLVN-------------RGNTYKEIGRVTDAIQDYIRAITIRPTMA-EAHANLASAYKDSGHVEAAIKSYKQALLL 324 (811)
Q Consensus 260 ~~~~~~~-------------la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~ 324 (811)
+...+.. .+..+...+..+..++..++.+..+...+ -++..+-.-+...|+.+++...|-+-+-.
T Consensus 259 dy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~ 337 (932)
T KOG2053|consen 259 DYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGD 337 (932)
T ss_pred chHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCC
Confidence 7222211 11122223444555555555554422222 24444444445678888877666554433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-07 Score=95.40 Aligned_cols=139 Identities=29% Similarity=0.407 Sum_probs=101.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHc-
Q 003557 162 YNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ- 240 (811)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~- 240 (811)
+...+.++.+. ++++|+++|++++. +|...|++..|-..+. .+|.+|...
T Consensus 78 ~~~Aa~~~k~~-~~~~Ai~~~~~A~~--------------~y~~~G~~~~aA~~~~--------------~lA~~ye~~~ 128 (282)
T PF14938_consen 78 YEEAANCYKKG-DPDEAIECYEKAIE--------------IYREAGRFSQAAKCLK--------------ELAEIYEEQL 128 (282)
T ss_dssp HHHHHHHHHHT-THHHHHHHHHHHHH--------------HHHHCT-HHHHHHHHH--------------HHHHHHCCTT
T ss_pred HHHHHHHHHhh-CHHHHHHHHHHHHH--------------HHHhcCcHHHHHHHHH--------------HHHHHHHHHc
Confidence 34444555444 77777777777653 5667777777666554 578888888
Q ss_pred CCHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHHh
Q 003557 241 GNYADAISCYNEVLRIDP--LA----ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM-------AEAHANLASAYKD 307 (811)
Q Consensus 241 g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~ 307 (811)
|++++|+++|+++.+... +. ...+..+|.++...|+|++|++.|++.....-++ ...+...+.|+..
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 999999999999988732 12 3477889999999999999999999998753221 2355677889999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCh
Q 003557 308 SGHVEAAIKSYKQALLLRPDFP 329 (811)
Q Consensus 308 ~g~~~~A~~~~~~al~~~p~~~ 329 (811)
.|+...|.+.+++..+.+|...
T Consensus 209 ~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp TT-HHHHHHHHHHHGTTSTTST
T ss_pred cCCHHHHHHHHHHHHhhCCCCC
Confidence 9999999999999999998654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.7e-08 Score=98.40 Aligned_cols=148 Identities=23% Similarity=0.259 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHc
Q 003557 161 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 240 (811)
Q Consensus 161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 240 (811)
.....|+.|++.|+|..|...|++++..-..... -+.++...... .-..++++++.++.++
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~------------~~~ee~~~~~~-------~k~~~~lNlA~c~lKl 270 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRS------------FDEEEQKKAEA-------LKLACHLNLAACYLKL 270 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhcccc------------CCHHHHHHHHH-------HHHHHhhHHHHHHHhh
Confidence 3455677778888888888888777664321100 00011110000 0124588999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHH-HHHHH
Q 003557 241 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAA-IKSYK 319 (811)
Q Consensus 241 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~ 319 (811)
++|.+|+...+++++.+|++..+++..|.++...|+++.|+..|+++++++|+|-.+...+..+-.+..++.+. .+.|.
T Consensus 271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998887665554 88888
Q ss_pred HHHhcCCC
Q 003557 320 QALLLRPD 327 (811)
Q Consensus 320 ~al~~~p~ 327 (811)
+++..-+.
T Consensus 351 ~mF~k~~~ 358 (397)
T KOG0543|consen 351 NMFAKLAE 358 (397)
T ss_pred HHhhcccc
Confidence 88876543
|
|
| >COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-07 Score=101.23 Aligned_cols=176 Identities=16% Similarity=0.160 Sum_probs=130.7
Q ss_pred EEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCc
Q 003557 603 FIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 680 (811)
Q Consensus 603 ~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~D 680 (811)
+++.++++. .|..+.+++++..+....|+..++++|.++.....+...+.+.+. .+.|.|.|..+..+....+..+|
T Consensus 200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~~~ 278 (381)
T COG0438 200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPERREELEKLAKKLGL-EDNVKFLGYVPDEELAELLASAD 278 (381)
T ss_pred eEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCccHHHHHHHHHHhCC-CCcEEEecccCHHHHHHHHHhCC
Confidence 566666654 589999999999998888888888888775423556667777777 58899999888667777788899
Q ss_pred EEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccccC-CHHHHHHHHHHHhcCHHHHHHHHHH
Q 003557 681 LFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN-SMKEYEERAVSLALDRQKLQALTNK 758 (811)
Q Consensus 681 v~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~-~~~~y~~~~~~l~~d~~~~~~~~~~ 758 (811)
+++.|+.++| |.+++|||++|+|||+...+.... ++..-+ .+.++.. +.++++..+..+..+++.+..+...
T Consensus 279 ~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~~~~e-----~~~~~~-~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 352 (381)
T COG0438 279 VFVLPSLSEGFGLVLLEAMAAGTPVIASDVGGIPE-----VVEDGE-TGLLVPPGDVEELADALEQLLEDPELREELGEA 352 (381)
T ss_pred EEEeccccccchHHHHHHHhcCCcEEECCCCChHH-----HhcCCC-ceEecCCCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999987766 899999999999999655332222 222211 1212222 5899999999999998777777764
Q ss_pred HHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 003557 759 LKSVRLTCPLFDTARWVKNLERSYFKMWS 787 (811)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 787 (811)
.++.. ...|+++.++..+.+.|.....
T Consensus 353 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 353 ARERV--EEEFSWERIAEQLLELYEELLA 379 (381)
T ss_pred HHHHH--HHhcCHHHHHHHHHHHHHHHHh
Confidence 44544 2459999999999888877654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.7e-07 Score=102.20 Aligned_cols=120 Identities=20% Similarity=0.167 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHhh--CCC-hhHHHhHHHHHHHcCCHH
Q 003557 74 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG--------MPQEAIMCYQRAVQT--RPN-AIAFGNLASTYYERGQAD 142 (811)
Q Consensus 74 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~--~p~-~~~~~~la~~~~~~g~~~ 142 (811)
..+|+.+|+++++++|++..++..++.++.... +..++.+..++++.. ++. +.++..++..+...|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 455666666666666666655555555443321 233444555554443 333 566666777777777777
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Q 003557 143 MAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ 194 (811)
Q Consensus 143 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 194 (811)
+|...+++++.++|+ ..+|..+|.++...|++++|++.|++++.++|.++.
T Consensus 438 ~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 438 EAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 777777777777774 667777777777777777777777777777777664
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.7e-07 Score=84.86 Aligned_cols=115 Identities=26% Similarity=0.241 Sum_probs=52.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHH
Q 003557 37 QGLVQEAYSCYLEALRIQPTF---AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF---PDAYLNLGNVYKALGMPQE 110 (811)
Q Consensus 37 ~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~ 110 (811)
.++..++...+++.+..+|+. ..+.+.+|.+++..|++++|...|++++...|+. ..+...++.++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 445555555555555555544 3344445555555555555555555555544332 1234444555555555555
Q ss_pred HHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHH
Q 003557 111 AIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQA 151 (811)
Q Consensus 111 A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~a 151 (811)
|+..++........+..+..+|.+|...|++++|...|+++
T Consensus 104 Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 55544332111111334444444444444444444444443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-07 Score=88.39 Aligned_cols=103 Identities=21% Similarity=0.263 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHH
Q 003557 4 GRLNEAAQCCRQALALNPLL--VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT---FAIAWSNLAGLFMESGDLNRAL 78 (811)
Q Consensus 4 g~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~ 78 (811)
+++..+...+..+++.++.+ ...++.+|.++...|++++|+..|++++.+.|+ .+.++..+|.++...|++++|+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~ 92 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL 92 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 34556666666665555444 556688888888888888888888888877655 2457888888888888888888
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 003557 79 QYYKEAVKLKPTFPDAYLNLGNVYKALG 106 (811)
Q Consensus 79 ~~~~~al~~~p~~~~~~~~la~~~~~~g 106 (811)
..++++++.+|.....+..++.++...|
T Consensus 93 ~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 93 EYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 8888888888888887877777777443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.7e-07 Score=83.96 Aligned_cols=115 Identities=26% Similarity=0.244 Sum_probs=78.4
Q ss_pred HcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----hhHHHhHHHHHHHcCCHH
Q 003557 70 ESGDLNRALQYYKEAVKLKPTF---PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIAFGNLASTYYERGQAD 142 (811)
Q Consensus 70 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~la~~~~~~g~~~ 142 (811)
..++...+...+++.++.+|+. ..+.+.++.++...|++++|...|++++...|+ ..+...++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4667777777777777777776 345666777777777777777777777776554 345666777777777777
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003557 143 MAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQC 185 (811)
Q Consensus 143 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 185 (811)
+|+..++. +...+..+..+..+|.++...|++++|+..|+++
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777755 2233334456666777777777777777777665
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.4e-08 Score=82.14 Aligned_cols=81 Identities=22% Similarity=0.274 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 003557 3 KGRLNEAAQCCRQALALNPL--LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 80 (811)
Q Consensus 3 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 80 (811)
+|++++|+..++++++.+|. +...++.+|.++++.|++++|+..+++ .+.++.+....+.+|.++.++|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46666666666666666663 344555566666666666666666666 555555556666666666666666666666
Q ss_pred HHHH
Q 003557 81 YKEA 84 (811)
Q Consensus 81 ~~~a 84 (811)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 6553
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-07 Score=95.80 Aligned_cols=145 Identities=13% Similarity=0.051 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 003557 6 LNEAAQCCRQAL---ALNPLLVDAHSNLGNLMKAQ---------GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 73 (811)
Q Consensus 6 ~~~A~~~~~~~l---~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 73 (811)
.+.|+.+|.+++ +.+|..+.+|..++.++... ....+|.+..+++++++|.++.++..+|.+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 345666777777 66777777777777666543 234456666677777777777777777777777777
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hhHHHhHHHHHHHcCCHHHHHHHHHH
Q 003557 74 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQ 150 (811)
Q Consensus 74 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~la~~~~~~g~~~~A~~~~~~ 150 (811)
++.|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|. ......+..-.+-....+.|+..|-+
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 777777777777777777777777777777777777777777777777776 22222222212223345555555544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.9e-08 Score=76.35 Aligned_cols=64 Identities=27% Similarity=0.376 Sum_probs=46.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCh
Q 003557 266 NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 329 (811)
Q Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 329 (811)
.+|..+...|++++|++.|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4667777777777777777777777777777777777777777777777777777777777764
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.5e-07 Score=93.29 Aligned_cols=156 Identities=13% Similarity=0.066 Sum_probs=85.8
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCH
Q 003557 28 SNLGNLMKAQGL---VQEAYSCYLEAL---RIQPTFAIAWSNLAGLFMES---------GDLNRALQYYKEAVKLKPTFP 92 (811)
Q Consensus 28 ~~l~~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~ 92 (811)
+..|......+. .+.|+.+|.+++ .++|+.+.+|..++.++... ....+|....+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 444444444333 335666666666 56666666666666665543 123455556666666666666
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH-HH
Q 003557 93 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNA-LK 170 (811)
Q Consensus 93 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~ 170 (811)
.++..+|.++...++++.|...|++++.++|+ +.+++..|.+....|+.++|.+.++++++++|....+-...-.+ .+
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~ 418 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY 418 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence 66666666666666666666666666666666 55666666666666666666666666666666544332222222 22
Q ss_pred HcCCHHHHHHHHH
Q 003557 171 DVGRVDEAIQCYN 183 (811)
Q Consensus 171 ~~g~~~~A~~~~~ 183 (811)
-....++|+.+|-
T Consensus 419 ~~~~~~~~~~~~~ 431 (458)
T PRK11906 419 VPNPLKNNIKLYY 431 (458)
T ss_pred cCCchhhhHHHHh
Confidence 3334445554443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.3e-07 Score=101.50 Aligned_cols=142 Identities=17% Similarity=0.118 Sum_probs=112.3
Q ss_pred cCCCChHHHH--HHHHHHHHcCC---hHHHHHHHHHHHhccCCCchHHHHHHHHHHHc--------CCHHHHHHHHHHHH
Q 003557 188 LQPSHPQALT--NLGNIYMEWNM---LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ--------GNYADAISCYNEVL 254 (811)
Q Consensus 188 ~~p~~~~~~~--~la~~~~~~g~---~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al 254 (811)
..|.+..+|- ..|.-+...+. ..+|+.+|+++++.+|++..++..++.++... .+..++.+..++++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3455555544 33444444333 66888888888888888888887777766543 23456666667766
Q ss_pred hc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChH
Q 003557 255 RI--DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 330 (811)
Q Consensus 255 ~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 330 (811)
.. ++.++.++..+|..+...|++++|...+++++.++|+ ..+|..+|.++...|++++|++.|++++.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 64 6777889999999999999999999999999999994 789999999999999999999999999999999885
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00011 Score=77.31 Aligned_cols=342 Identities=18% Similarity=0.151 Sum_probs=194.8
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 003557 14 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD 93 (811)
Q Consensus 14 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 93 (811)
++-++.+|.+.++|+.+..-+..+ -+++..+.|++.+...|..+.+|...+...+..++|+.-..+|.+++...-+ .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 667788999999999999887766 9999999999999999999999999999999999999999999998865322 33
Q ss_pred HHHH-HHHHHHHcCChHHHHHH----HHHHHhh---CCC-hhHHHhHHHH---------HHHcCCHHHHHHHHHHHHHcC
Q 003557 94 AYLN-LGNVYKALGMPQEAIMC----YQRAVQT---RPN-AIAFGNLAST---------YYERGQADMAILYYKQAIGCD 155 (811)
Q Consensus 94 ~~~~-la~~~~~~g~~~~A~~~----~~~al~~---~p~-~~~~~~la~~---------~~~~g~~~~A~~~~~~al~~~ 155 (811)
.|.. +..+-...|+...+... |+-+++. ++. ...|...+.. +..+.+.+...+.|++++..-
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 3322 22222233333332222 2222221 121 2222222221 122223344444555554321
Q ss_pred CCcHH-HHH-----------HHHH--HHHHcCCHHHHHHH----------------------------------------
Q 003557 156 PRFLE-AYN-----------NLGN--ALKDVGRVDEAIQC---------------------------------------- 181 (811)
Q Consensus 156 p~~~~-~~~-----------~la~--~~~~~g~~~~A~~~---------------------------------------- 181 (811)
-.+.+ .|. ..|. +--....|..|...
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 11110 000 0000 00111222223222
Q ss_pred --------------------HHHHHhcCCCChHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHhcc-CCC
Q 003557 182 --------------------YNQCLSLQPSHPQALTNLGNIYMEWNM--------------LPAAASYYKATLAVT-TGL 226 (811)
Q Consensus 182 --------------------~~~al~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~~l~~~-~~~ 226 (811)
+++++..-+-.+++|+..+..+...++ .+++...|++++... ..+
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~ 327 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN 327 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444433333333 445555555555432 122
Q ss_pred chHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 003557 227 SAPFNNLAVIYKQQG---NYADAISCYNEVLRIDPLAA-DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302 (811)
Q Consensus 227 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 302 (811)
...++.++..-...- +++.....+++++.....++ -++..+...-.+..-.+.|..+|.++-+..-....++..-|
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A 407 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAA 407 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHH
Confidence 223333333222221 25555566666665533332 24555555555666677888888888766433333443333
Q ss_pred HH-HHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHH
Q 003557 303 SA-YKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEG 357 (811)
Q Consensus 303 ~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~ 357 (811)
.+ |...++.+-|.++|+--++..++.+......+..+..+++-..+..+|++++.
T Consensus 408 ~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 408 LMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 32 34578999999999999999999999988888888888988888888877654
|
|
| >TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1 | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-07 Score=105.27 Aligned_cols=165 Identities=12% Similarity=0.056 Sum_probs=126.7
Q ss_pred EEEEecCC-CCCCCHHHHHHHHHHHhhcCCeEEEeecCChh--hHHHHHHHHHHcCCC----------------------
Q 003557 603 FIFACFNQ-LYKMDPEIFNTWCNILRRVPNSALWLLRFPAA--GEMRLRAYAVAQGVQ---------------------- 657 (811)
Q Consensus 603 ~~~~~~~~-~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~--~~~~l~~~~~~~gi~---------------------- 657 (811)
+++...-| ..|....+++++.++++++|++.|.+.|.+.. ....+++.+++.+..
T Consensus 322 ~I~v~idrL~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (519)
T TIGR03713 322 EIGFWIDGLSDEELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQT 401 (519)
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccc
Confidence 44433334 46889999999999999999999999887642 235666666666653
Q ss_pred ------CCceEEcCCCChHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccc
Q 003557 658 ------PDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI 731 (811)
Q Consensus 658 ------~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v 731 (811)
.++|.|.|..+..+....|..+.|++|++..+|-.|.+||+..|+|+|-.....+ +.. |.++ .+
T Consensus 402 ~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~GiPqInyg~~~~--------V~d-~~NG-~l 471 (519)
T TIGR03713 402 DEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQINKVETDY--------VEH-NKNG-YI 471 (519)
T ss_pred hhhcccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChHHHHHHHHcCCCeeecCCcee--------eEc-CCCc-EE
Confidence 1799999987777888999999999999999993399999999999992211122 222 7777 77
Q ss_pred cCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHH
Q 003557 732 VNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLER 780 (811)
Q Consensus 732 ~~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 780 (811)
..+.+++.+++..+..++....++.....+.+. .|+.+...+++++
T Consensus 472 i~d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~---~yS~~~i~~kW~~ 517 (519)
T TIGR03713 472 IDDISELLKALDYYLDNLKNWNYSLAYSIKLID---DYSSENIIERLNE 517 (519)
T ss_pred eCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH---HhhHHHHHHHHHh
Confidence 799999999999999999999998887777653 3777776665554
|
This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.9e-08 Score=81.61 Aligned_cols=81 Identities=32% Similarity=0.513 Sum_probs=59.5
Q ss_pred cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 003557 240 QGNYADAISCYNEVLRIDPL--AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKS 317 (811)
Q Consensus 240 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 317 (811)
+|++++|+.+++++++..|. +...++.+|.++.+.|++++|+.++++ .+.++.+....+.+|.++.++|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 56777788888887777774 345666678888888888888888877 667777777777778888888888888887
Q ss_pred HHHH
Q 003557 318 YKQA 321 (811)
Q Consensus 318 ~~~a 321 (811)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7764
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.9e-07 Score=84.01 Aligned_cols=100 Identities=14% Similarity=0.044 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003557 21 PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGN 100 (811)
Q Consensus 21 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 100 (811)
++..+..+..|.-++..|++++|...|+-....+|.++..+..||.++..++++++|+..|..+..++++++...+..|.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 34556778888889999999999999999888899999999999999999999999999999999998899999999999
Q ss_pred HHHHcCChHHHHHHHHHHHh
Q 003557 101 VYKALGMPQEAIMCYQRAVQ 120 (811)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~ 120 (811)
||...|+.++|+..|+.+++
T Consensus 114 C~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999998887
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-08 Score=98.28 Aligned_cols=235 Identities=17% Similarity=0.100 Sum_probs=122.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 003557 28 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM 107 (811)
Q Consensus 28 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 107 (811)
-..|+-|+++|.|++|+.+|.+.+..+|.|+..+.+.+.+|++.+.+..|...+..++.++.....+|...+.+-..+|+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 34455566666666666666666666666666666666666666666666666666666655555555555555555566
Q ss_pred hHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003557 108 PQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL 186 (811)
Q Consensus 108 ~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 186 (811)
..+|.+.++.++.+.|+ .+....++. .....++. -+.+..|.... |.+--.+++
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELkK~~a~----i~Sl~E~~----I~~KsT~G~~~-----------------A~Q~~~Q~l 235 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELKKSLAR----INSLRERK----IATKSTPGFTP-----------------ARQGMIQIL 235 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHHHHHHH----hcchHhhh----HHhhcCCCCCc-----------------cccchhhhc
Confidence 66666666655555555 221111111 11111110 00111111111 111111111
Q ss_pred hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 003557 187 SLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVN 266 (811)
Q Consensus 187 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 266 (811)
. .-.-|..+...|.++.++..+-.-......+...-.+ +..|.+..++++++.-..+++..+|........
T Consensus 236 ~--------~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~ 306 (536)
T KOG4648|consen 236 P--------IKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSG 306 (536)
T ss_pred c--------ccCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCC
Confidence 0 0112344455555666655555444333333222222 555666677777777777777766655555555
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHH
Q 003557 267 RGNTYKEIGRVTDAIQDYIRAITIRPTMAE 296 (811)
Q Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 296 (811)
.+..-.-.|...++...++.++.+.|.+..
T Consensus 307 ~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~ 336 (536)
T KOG4648|consen 307 PPKAETIAKTSKEVKPTKQTAVKVAPAVET 336 (536)
T ss_pred CchhHHHHhhhhhcCcchhheeeecccccc
Confidence 555555567778888888888888887663
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.6e-08 Score=75.05 Aligned_cols=64 Identities=31% Similarity=0.553 Sum_probs=49.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 003557 29 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP 92 (811)
Q Consensus 29 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 92 (811)
.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5677778888888888888888888888888888888888888888888888888888877764
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.3e-07 Score=83.39 Aligned_cols=105 Identities=11% Similarity=0.003 Sum_probs=93.5
Q ss_pred cCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 003557 223 TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302 (811)
Q Consensus 223 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 302 (811)
.++..+..+..|.-++..|++++|..+|+-....+|.+++.+..+|.++..++++++|+..|..+..++++++...+..|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 34445567788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCC
Q 003557 303 SAYKDSGHVEAAIKSYKQALLLRPDF 328 (811)
Q Consensus 303 ~~~~~~g~~~~A~~~~~~al~~~p~~ 328 (811)
.||..+|+.++|+.+|+.+++ .|.+
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 999999999999999999988 3543
|
|
| >KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.2e-07 Score=88.99 Aligned_cols=177 Identities=14% Similarity=0.159 Sum_probs=133.7
Q ss_pred cEEEEecC--CCCCCCHHHHHHHHHHHhhc------CCeEEEeecC--ChhhH---HHHHHHHHHcCCCCCceEEcCCCC
Q 003557 602 KFIFACFN--QLYKMDPEIFNTWCNILRRV------PNSALWLLRF--PAAGE---MRLRAYAVAQGVQPDQIIFTDVAM 668 (811)
Q Consensus 602 ~~~~~~~~--~~~K~~~~~~~~~~~il~~~------p~~~l~l~~~--~~~~~---~~l~~~~~~~gi~~~rv~~~~~~~ 668 (811)
.+...+++ |+.|+|+ ++++++--+++. ++.+|.++|+ +.+++ ..|+.++.++.| ++.|.|.-..|
T Consensus 269 ~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i-~~~v~F~~N~P 346 (465)
T KOG1387|consen 269 ENQLLSLAQFRPEKNHK-ILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKI-PKHVQFEKNVP 346 (465)
T ss_pred ceEEEEEeecCcccccH-HHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCC-ccceEEEecCC
Confidence 35566665 6789999 888887666654 4578999985 23333 357888999999 57799999999
Q ss_pred hHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCC-CcccccCCccccchhHHHHHhcCCCCccccCCHHHHHHHHHHHh
Q 003557 669 KQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGL-PMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLA 746 (811)
Q Consensus 669 ~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~-Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~~~~~y~~~~~~l~ 746 (811)
+++....+..+-+-+.+.--+- |.++.|+|++|+ ||+--.|+..-.=|... .|-+..+.+.|.+||++..++..
T Consensus 347 y~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~----~G~~tGFla~t~~EYaE~iLkIv 422 (465)
T KOG1387|consen 347 YEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPW----DGETTGFLAPTDEEYAEAILKIV 422 (465)
T ss_pred HHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCCCCceeeeecc----CCccceeecCChHHHHHHHHHHH
Confidence 9999999999999999975555 999999999997 44433333222222111 13333477889999999998887
Q ss_pred c-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 003557 747 L-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 787 (811)
Q Consensus 747 ~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 787 (811)
. |++.|..+|...|..... |+...|-++++..+..+++
T Consensus 423 ~~~~~~r~~~r~~AR~s~~R---FsE~~F~kd~~~~i~kll~ 461 (465)
T KOG1387|consen 423 KLNYDERNMMRRNARKSLAR---FGELKFDKDWENPICKLLE 461 (465)
T ss_pred HcCHHHHHHHHHHHHHHHHH---hhHHHHHHhHhHHHHHhhc
Confidence 4 788899999999988643 9999999999988877765
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.9e-07 Score=89.37 Aligned_cols=104 Identities=19% Similarity=0.230 Sum_probs=88.5
Q ss_pred hHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHHH
Q 003557 228 APFNNLAVIY-KQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT---MAEAHAN 300 (811)
Q Consensus 228 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~ 300 (811)
...+..+..+ .+.|+|++|+..|++.++.+|++ +.+++.+|.+|...|++++|+..|+++++..|+ .+++++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4455566554 56789999999999999999887 578999999999999999999999999988776 4778899
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCChHH
Q 003557 301 LASAYKDSGHVEAAIKSYKQALLLRPDFPEA 331 (811)
Q Consensus 301 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 331 (811)
+|.++..+|++++|...|+++++..|+...+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 9999999999999999999999999987654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.4e-08 Score=96.81 Aligned_cols=228 Identities=17% Similarity=0.160 Sum_probs=160.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q 003557 95 YLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 173 (811)
Q Consensus 95 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 173 (811)
....|+-|+++|+|++|+.+|.+.+..+|. +..+.+.+..|++...+..|..-+..++.++..+..+|...+.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 456788899999999999999999999994 8888899999999999999999999999998888889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHH---------HHHHHHHHHcCCHH
Q 003557 174 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPF---------NNLAVIYKQQGNYA 244 (811)
Q Consensus 174 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~---------~~la~~~~~~g~~~ 244 (811)
+..+|.+-++.++++.|++.+..-.++.+-. ..++.- +.+..|....+. -.-|..+...|.++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~I----~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~ 251 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRERKI----ATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRS 251 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhhH----HhhcCCCCCccccchhhhccccCcchhhhhhhccc
Confidence 9999999999999999987665544443322 111111 111122211111 12355666777777
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 003557 245 DAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL 324 (811)
Q Consensus 245 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 324 (811)
.++.++..-+.....+...-.+ +..+.+..+++.|+....+++..+|........-+.+---.|...++...++.++.+
T Consensus 252 ~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~ 330 (536)
T KOG4648|consen 252 VPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKV 330 (536)
T ss_pred cceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeee
Confidence 7777776665544433333333 666777778888888888888777765544444555555566677777777777777
Q ss_pred CCCChHH
Q 003557 325 RPDFPEA 331 (811)
Q Consensus 325 ~p~~~~~ 331 (811)
.|.+..+
T Consensus 331 ~P~~~~~ 337 (536)
T KOG4648|consen 331 APAVETP 337 (536)
T ss_pred ccccccc
Confidence 7765443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-05 Score=77.55 Aligned_cols=181 Identities=22% Similarity=0.227 Sum_probs=110.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHH
Q 003557 23 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF---AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD---AYL 96 (811)
Q Consensus 23 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 96 (811)
.+..++.-|...++.|++++|+..|+++....|.. ..+...++.++++.+++++|+...++-+++.|.++. +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 45677888888888888888888888888877665 567778888888888888888888888888776654 556
Q ss_pred HHHHHHHHcCC--------hHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 003557 97 NLGNVYKALGM--------PQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNA 168 (811)
Q Consensus 97 ~la~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 168 (811)
..|.++...=+ ..+|+..|+..++..|++..-- +-+.-+..++..+ ..--..+|..
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~----------dA~~~i~~~~d~L------A~~Em~Iary 176 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAP----------DAKARIVKLNDAL------AGHEMAIARY 176 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchh----------hHHHHHHHHHHHH------HHHHHHHHHH
Confidence 66666543311 2356666666666666521100 0000000111110 1122345666
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHcCChHHHHHHHHHH
Q 003557 169 LKDVGRVDEAIQCYNQCLSLQPSHP---QALTNLGNIYMEWNMLPAAASYYKAT 219 (811)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~ 219 (811)
|.+.|.+..|+.-++.+++..|+.. +++..+..+|..+|-.++|...-+-+
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 6666777777777776666655433 45555566666666666665554433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.4e-07 Score=93.38 Aligned_cols=121 Identities=18% Similarity=0.138 Sum_probs=102.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH
Q 003557 198 NLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRV 277 (811)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 277 (811)
.+..++...++++.|+..+++..+.+|+ ....++.++...++..+|++.++++++.+|.+...+...+..+...+++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 4455566677888888888888777654 5566888888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 003557 278 TDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 321 (811)
Q Consensus 278 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 321 (811)
+.|++..+++.+..|++...|+.|+.+|...|++++|+..++.+
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999998777644
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.7e-07 Score=96.48 Aligned_cols=174 Identities=17% Similarity=0.165 Sum_probs=124.1
Q ss_pred CcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhcCC----eEEEeecCChh--------hHHHHHHHHHH----
Q 003557 592 KRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPN----SALWLLRFPAA--------GEMRLRAYAVA---- 653 (811)
Q Consensus 592 ~r~~~gl~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~l~~~~~~--------~~~~l~~~~~~---- 653 (811)
+|+.+| +..++.++.|+. |+.+..++++.++|++.|+ .+|+++|.+.. -+..+.+.+.+
T Consensus 278 lr~~~~---~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~ 354 (487)
T TIGR02398 278 IRSELA---GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGR 354 (487)
T ss_pred HHHHcC---CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhc
Confidence 677776 567888999884 9999999999999999996 68888876531 12333333333
Q ss_pred ---cCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCC----CcccccCCccccchhHHHHHhcC
Q 003557 654 ---QGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGL----PMITLPLEKMATRVAGSLCLATG 725 (811)
Q Consensus 654 ---~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~----Pvvt~~g~~~~~r~~~~~l~~~g 725 (811)
.|. ...+.|.+..+.++..++|+.+||+|.|+...| ++++.|+++++. |+| .|+.+++. ..+
T Consensus 355 fg~~~~-~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLI-------LSefaGaa-~~l- 424 (487)
T TIGR02398 355 FARIGW-TPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLV-------LSEFAGAA-VEL- 424 (487)
T ss_pred cCCCCC-ccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEE-------Eeccccch-hhc-
Confidence 244 345778888899999999999999999999999 999999999988 666 45554221 111
Q ss_pred CCCcccc--CCHHHHHHHHHHHhcC-HHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 003557 726 LGEEMIV--NSMKEYEERAVSLALD-RQKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 782 (811)
Q Consensus 726 ~~~~~v~--~~~~~y~~~~~~l~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 782 (811)
.+.++. .|+++.++.+.+..+. .+.|.+-.+.+++.+.. +|...+++.+-...
T Consensus 425 -~~AllVNP~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~---~d~~~W~~~fl~~l 480 (487)
T TIGR02398 425 -KGALLTNPYDPVRMDETIYVALAMPKAEQQARMREMFDAVNY---YDVQRWADEFLAAV 480 (487)
T ss_pred -CCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHh
Confidence 121332 5788888776666654 44555555666666644 78888888776544
|
Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-06 Score=79.83 Aligned_cols=109 Identities=27% Similarity=0.314 Sum_probs=95.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 003557 231 NNLAVIYKQQGNYADAISCYNEVLRIDPLAA-----DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAY 305 (811)
Q Consensus 231 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 305 (811)
-.-|.-++..|+|++|..-|..++++.|..+ ..|.+.|.++.+++.++.|++.+.++++++|.+..++...|.+|
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAY 178 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHH
Confidence 3457778889999999999999999988653 37788899999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHh
Q 003557 306 KDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 339 (811)
Q Consensus 306 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 339 (811)
.++.++++|++-|+++++.+|....+.-..+.+-
T Consensus 179 ek~ek~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 9999999999999999999999887766655443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.9e-06 Score=86.68 Aligned_cols=90 Identities=23% Similarity=0.362 Sum_probs=48.9
Q ss_pred HcCChHHHHHHHHHHHhhCCC----hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHcCCHH
Q 003557 104 ALGMPQEAIMCYQRAVQTRPN----AIAFGNLASTYYERGQADMAILYYKQAIGCDPR---FLEAYNNLGNALKDVGRVD 176 (811)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~ 176 (811)
+.|++++|+..|++.++..|+ ..+++.+|.+|+..|++++|+..|+++++..|+ ..++++.+|.++...|+++
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence 345555555555555555554 245555555555555555555555555544444 3445555555555555555
Q ss_pred HHHHHHHHHHhcCCCCh
Q 003557 177 EAIQCYNQCLSLQPSHP 193 (811)
Q Consensus 177 ~A~~~~~~al~~~p~~~ 193 (811)
+|...|+++++..|++.
T Consensus 235 ~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 235 KAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHHCcCCH
Confidence 55555555555555544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.5e-06 Score=91.90 Aligned_cols=114 Identities=19% Similarity=0.186 Sum_probs=54.3
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHH
Q 003557 135 YYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 214 (811)
Q Consensus 135 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 214 (811)
+...++++.|++.++++.+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+...++++.|+.
T Consensus 179 l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~ 255 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALE 255 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 33344455555555554444443 233344444444455555555555555445444444444444444444444444
Q ss_pred HHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHH
Q 003557 215 YYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYN 251 (811)
Q Consensus 215 ~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (811)
..+++.+..|.+...|+.|+.+|...|++++|+..++
T Consensus 256 iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 256 IAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 4444444444444444444444444444444444443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-05 Score=72.93 Aligned_cols=156 Identities=21% Similarity=0.147 Sum_probs=120.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCh
Q 003557 30 LGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVK-LKPTFPDAYLNLGNVYKALGMP 108 (811)
Q Consensus 30 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~ 108 (811)
++....+.=+.+....-..+.+...|.. .-.+.++....+.|++.+|...|++++. ..-.++..+..+++.....+++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 3444455556666666666667777764 5567788888888888888888888876 4556777888888888888888
Q ss_pred HHHHHHHHHHHhhCCC---hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003557 109 QEAIMCYQRAVQTRPN---AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQC 185 (811)
Q Consensus 109 ~~A~~~~~~al~~~p~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 185 (811)
..|...+++..+.+|. +.....++..+...|++.+|...|+.++...|+. .+....+..+.++|+.++|..-+...
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 8888888888888776 6777788888888888888888888888888774 46677788888888888877766655
Q ss_pred Hh
Q 003557 186 LS 187 (811)
Q Consensus 186 l~ 187 (811)
.+
T Consensus 220 ~d 221 (251)
T COG4700 220 VD 221 (251)
T ss_pred HH
Confidence 54
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2e-05 Score=71.25 Aligned_cols=155 Identities=21% Similarity=0.240 Sum_probs=120.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-C-CChhHHHhHHHHHHHcCCHHH
Q 003557 66 GLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT-R-PNAIAFGNLASTYYERGQADM 143 (811)
Q Consensus 66 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~-p~~~~~~~la~~~~~~g~~~~ 143 (811)
....+.=+.+....-..+.+...|.. .-.+.++..+...|++.+|...|++++.- . .+...+..+++..+..+++..
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 64 MALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHH
Confidence 33344445555555555666666653 45778899999999999999999998863 2 237788889999999999999
Q ss_pred HHHHHHHHHHcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003557 144 AILYYKQAIGCDPR--FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 221 (811)
Q Consensus 144 A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 221 (811)
|...+++..+.+|. .++....++..+...|++.+|...|+.++...|+ +......+..+.++|+..+|...+....+
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 99999999888775 4556788899999999999999999999998876 67777788889999988888776665554
Q ss_pred c
Q 003557 222 V 222 (811)
Q Consensus 222 ~ 222 (811)
.
T Consensus 222 ~ 222 (251)
T COG4700 222 T 222 (251)
T ss_pred H
Confidence 3
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.1e-05 Score=70.80 Aligned_cols=224 Identities=20% Similarity=0.284 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------------------HH-HHHHHHHHHHHcCChHHHHHHHHHH
Q 003557 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF------------------PD-AYLNLGNVYKALGMPQEAIMCYQRA 118 (811)
Q Consensus 58 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------------~~-~~~~la~~~~~~g~~~~A~~~~~~a 118 (811)
...|...-.++.+....++|..-+...-+.+..+ |. .....+.+....|+..+.+.-+...
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 4556666666777777777766665554443111 00 1223344555556655555444433
Q ss_pred HhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHH
Q 003557 119 VQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-PSHPQALT 197 (811)
Q Consensus 119 l~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 197 (811)
... ...+..........+..++.+++-+. .+.+.+..++...|.|.-....+.+.++.+ |.++....
T Consensus 149 ~~~------V~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s 216 (366)
T KOG2796|consen 149 KTV------VSKILANLEQGLAEESSIRLWRKRLG------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLS 216 (366)
T ss_pred HHH------HHHHHHHHHhccchhhHHHHHHHHHH------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHH
Confidence 321 11111222222222444555554332 355666777777777777777777777766 45666777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcc------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 003557 198 NLGNIYMEWNMLPAAASYYKATLAVT------TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY 271 (811)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~l~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 271 (811)
.++.+..+.|+.+.|..+++...+.. ........+.+.+|.-.+++.+|...+.+++..+|.++.+.++.|.|+
T Consensus 217 ~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcl 296 (366)
T KOG2796|consen 217 GLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCL 296 (366)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHH
Confidence 77777777777777777777544321 112223344444555555555555555555555555555555555555
Q ss_pred HHhCCHHHHHHHHHHHHhcCCC
Q 003557 272 KEIGRVTDAIQDYIRAITIRPT 293 (811)
Q Consensus 272 ~~~g~~~~A~~~~~~al~~~p~ 293 (811)
...|+..+|++..+.+++..|.
T Consensus 297 lYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 297 LYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHHHHHHHhccCCc
Confidence 5555555555555555555443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.1e-07 Score=72.02 Aligned_cols=63 Identities=27% Similarity=0.194 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 003557 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA 65 (811)
Q Consensus 3 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 65 (811)
+|++++|++.|+++++.+|++..+++.+|.++.+.|++++|...+++++..+|+++..+..++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 455555555555555555555555555555555555555555555555555555444444433
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.4e-06 Score=72.58 Aligned_cols=91 Identities=29% Similarity=0.276 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCC----hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHH
Q 003557 95 YLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIAFGNLASTYYERGQADMAILYYKQAIGCDPR---FLEAYNNLGN 167 (811)
Q Consensus 95 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~ 167 (811)
++.++.++-..|+.++|+.+|++++....+ ..++..++..+...|++++|+..+++.+...|+ +......++.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 344444444444444444444444443221 233444444444444444444444444444443 3333344444
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 003557 168 ALKDVGRVDEAIQCYNQC 185 (811)
Q Consensus 168 ~~~~~g~~~~A~~~~~~a 185 (811)
++...|+.++|++.+..+
T Consensus 84 ~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 444444444444444433
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3e-05 Score=75.06 Aligned_cols=175 Identities=21% Similarity=0.163 Sum_probs=114.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcC--
Q 003557 1 MRKGRLNEAAQCCRQALALNPL---LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF---AIAWSNLAGLFMESG-- 72 (811)
Q Consensus 1 l~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g-- 72 (811)
|+.|++++|.+.|+.+....|. ...+...++.++++.+++++|+...++.+.+.|++ ..+++..|.+++..=
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 4789999999999999988766 45688999999999999999999999999998876 567788888776532
Q ss_pred ------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHH
Q 003557 73 ------DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAIL 146 (811)
Q Consensus 73 ------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~ 146 (811)
-..+|...|+..++..|++.-+-.....+ ..+...+ ..--..+|..|.+.|.+..|+.
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i-----------~~~~d~L-----A~~Em~IaryY~kr~~~~AA~n 188 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI-----------VKLNDAL-----AGHEMAIARYYLKRGAYVAAIN 188 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH-----------HHHHHHH-----HHHHHHHHHHHHHhcChHHHHH
Confidence 24577888888999999864321111100 0000000 1112234556666666666666
Q ss_pred HHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003557 147 YYKQAIGCDPRF---LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 191 (811)
Q Consensus 147 ~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 191 (811)
-++++++..|+. .+++..+..+|..+|-.++|.+.-.-+-...|+
T Consensus 189 R~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 189 RFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 666666554443 335555666666666666665554333333333
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.45 E-value=6e-07 Score=70.38 Aligned_cols=66 Identities=24% Similarity=0.251 Sum_probs=52.6
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003557 35 KAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGN 100 (811)
Q Consensus 35 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 100 (811)
++.|++++|+..|++++..+|++..+++.++.+|...|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 567888888888888888888888888888888888888888888888888888887776666654
|
... |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=9e-05 Score=76.82 Aligned_cols=287 Identities=19% Similarity=0.165 Sum_probs=163.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hh------CCC---hhHHHhHH
Q 003557 63 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV-QT------RPN---AIAFGNLA 132 (811)
Q Consensus 63 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~------~p~---~~~~~~la 132 (811)
.....+.+..+...+..-.+.+.....+.+.+....++.++..|++.+|.+.+...- .. .|. ...|+++|
T Consensus 211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlG 290 (696)
T KOG2471|consen 211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLG 290 (696)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcc
Confidence 334445555555555555555555555666666666666666666666666554331 11 111 23456666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc---------C---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Q 003557 133 STYYERGQADMAILYYKQAIGC---------D---------PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ 194 (811)
Q Consensus 133 ~~~~~~g~~~~A~~~~~~al~~---------~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 194 (811)
-++++.|.|.-+..+|.++++. . ....++.++.|..|...|+.-.|.++|.++......+|.
T Consensus 291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr 370 (696)
T KOG2471|consen 291 CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR 370 (696)
T ss_pred eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH
Confidence 6666666666666666666631 1 112345666666666667777777777666666666666
Q ss_pred HHHHHHHHHHHcCC-------------------------------------------------hHHHHHHHHHHHhcc--
Q 003557 195 ALTNLGNIYMEWNM-------------------------------------------------LPAAASYYKATLAVT-- 223 (811)
Q Consensus 195 ~~~~la~~~~~~g~-------------------------------------------------~~~A~~~~~~~l~~~-- 223 (811)
.|..++.+++...+ .+-|.-+++.++-+-
T Consensus 371 lWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e 450 (696)
T KOG2471|consen 371 LWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNE 450 (696)
T ss_pred HHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCch
Confidence 66666666542110 011222222222110
Q ss_pred -------------------------------------------C-CCc-----------hHHHHHHHHHHHcCCHHHHHH
Q 003557 224 -------------------------------------------T-GLS-----------APFNNLAVIYKQQGNYADAIS 248 (811)
Q Consensus 224 -------------------------------------------~-~~~-----------~~~~~la~~~~~~g~~~~A~~ 248 (811)
| ..+ .++.+.+.+-...|+.-.|+.
T Consensus 451 ~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~ 530 (696)
T KOG2471|consen 451 KQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALS 530 (696)
T ss_pred hhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHH
Confidence 0 000 124456677778888888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHH-----HHhCCHHHHHHHHHHHH------hc-----------------CCC-------
Q 003557 249 CYNEVLRIDPLAADGLVNRGNTY-----KEIGRVTDAIQDYIRAI------TI-----------------RPT------- 293 (811)
Q Consensus 249 ~~~~al~~~p~~~~~~~~la~~~-----~~~g~~~~A~~~~~~al------~~-----------------~p~------- 293 (811)
.-++.++. ++-..++..+|.+| .-+.+..+|...+.--+ .+ +|.
T Consensus 531 ~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~ 609 (696)
T KOG2471|consen 531 AATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQS 609 (696)
T ss_pred HHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCccc
Confidence 88888775 34445555555444 45567777766554311 00 110
Q ss_pred ---c-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC--CChHHHHHHHHHhhhcCChhhHhH
Q 003557 294 ---M-----AEAHANLASAYKDSGHVEAAIKSYKQALLLRP--DFPEATCNLLHTLQCVCSWEDRDR 350 (811)
Q Consensus 294 ---~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~a~~ 350 (811)
. ...+++||.++.-+|++++|..++..+..+-+ .++.+..-....-..+|+..++..
T Consensus 610 ~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~ 676 (696)
T KOG2471|consen 610 VFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALA 676 (696)
T ss_pred ccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHH
Confidence 1 22567888888888888888888888887766 455554444444445565555443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.3e-06 Score=80.49 Aligned_cols=104 Identities=19% Similarity=0.263 Sum_probs=91.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 003557 230 FNNLAVIYKQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM---AEAHANLAS 303 (811)
Q Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 303 (811)
.++.+.-+++.|+|.+|...|...++..|++ +.+++.||.+++.+|++++|...|..+.+..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6777888888999999999999999998876 5789999999999999999999999999887654 688999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCCChHHHH
Q 003557 304 AYKDSGHVEAAIKSYKQALLLRPDFPEATC 333 (811)
Q Consensus 304 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 333 (811)
+...+|+.++|...|+++++..|+.+.+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999999999999877654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.40 E-value=8e-06 Score=70.96 Aligned_cols=95 Identities=23% Similarity=0.251 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHHHHH
Q 003557 229 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT---MAEAHANLA 302 (811)
Q Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la 302 (811)
+++.++.++-..|+.++|+.+|+++++..... ..++..+|..+..+|++++|+..+++.+...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 45666666777777777777777776654333 346667777777777777777777777766666 556666667
Q ss_pred HHHHhCCCHHHHHHHHHHHHh
Q 003557 303 SAYKDSGHVEAAIKSYKQALL 323 (811)
Q Consensus 303 ~~~~~~g~~~~A~~~~~~al~ 323 (811)
.++...|+.++|++.+-.++.
T Consensus 83 l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777776666553
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.1e-06 Score=68.40 Aligned_cols=65 Identities=26% Similarity=0.348 Sum_probs=43.7
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHH
Q 003557 268 GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 332 (811)
Q Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 332 (811)
..+|...+++++|+++++++++.+|+++..+..+|.++...|++++|.+.++++++..|+++.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 34566666666666666666666666666666677777777777777777777777666665544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.9e-06 Score=75.44 Aligned_cols=108 Identities=24% Similarity=0.319 Sum_probs=88.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCC------hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 003557 95 YLNLGNVYKALGMPQEAIMCYQRAVQTRPN------AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNA 168 (811)
Q Consensus 95 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 168 (811)
+..-|+-++..|+|++|..-|..++...|. ...|.+.+.++.+++.++.|++.+.++++++|.+..++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 444567778888899999999988888776 45677888888888999999999999999999888888888889
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 003557 169 LKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNI 202 (811)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 202 (811)
|.++.+|++|++-|+++++.+|...++.-..+.+
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 9888899999999999988888876655544443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0068 Score=64.35 Aligned_cols=345 Identities=11% Similarity=0.008 Sum_probs=207.0
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH-HHHHHcCCHHHHHHHH
Q 003557 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA-GLFMESGDLNRALQYY 81 (811)
Q Consensus 3 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~g~~~~A~~~~ 81 (811)
...++++.+.|++.....|..+.+|...+...+..++|+.-..+|.+.+...-+ .+.|.... .+-...++...+....
T Consensus 32 t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~lYl~YVR~~~~~~~~~r~~m 110 (656)
T KOG1914|consen 32 TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWKLYLSYVRETKGKLFGYREKM 110 (656)
T ss_pred cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHHHHHHHHHHHccCcchHHHHH
Confidence 457899999999999999999999999999999999999999999988764222 23332211 1222233333322222
Q ss_pred HHH----Hh---cCCCCHHHHHHHHHHHH---------HcCChHHHHHHHHHHHhhC-----------------------
Q 003557 82 KEA----VK---LKPTFPDAYLNLGNVYK---------ALGMPQEAIMCYQRAVQTR----------------------- 122 (811)
Q Consensus 82 ~~a----l~---~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~----------------------- 122 (811)
-++ +. .++.....|...+..+. .+.+.+.-.+.|++++..-
T Consensus 111 ~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~ta 190 (656)
T KOG1914|consen 111 VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITA 190 (656)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHH
Confidence 222 21 12333333333333221 1112233334444443310
Q ss_pred --------------------------------CC------------hhHHHhHHHHHHHcCC--------HHHHHHHHHH
Q 003557 123 --------------------------------PN------------AIAFGNLASTYYERGQ--------ADMAILYYKQ 150 (811)
Q Consensus 123 --------------------------------p~------------~~~~~~la~~~~~~g~--------~~~A~~~~~~ 150 (811)
|. .+.|.++...-...+- -..-.-.+++
T Consensus 191 rK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ 270 (656)
T KOG1914|consen 191 RKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQ 270 (656)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHH
Confidence 00 0112111111111100 0111223444
Q ss_pred HHHcCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHcC---ChHHH
Q 003557 151 AIGCDPRFLEAYNNLGNALKDVGR--------------VDEAIQCYNQCLSLQP-SHPQALTNLGNIYMEWN---MLPAA 212 (811)
Q Consensus 151 al~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g---~~~~A 212 (811)
++..-+-.+++|+..+..+...++ .+++..+|++++.... .+...++.++..-...- +.+..
T Consensus 271 ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~ 350 (656)
T KOG1914|consen 271 CLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKV 350 (656)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhh
Confidence 444445556666666555555555 6778888888876432 23344444544433333 36677
Q ss_pred HHHHHHHHhccCCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHhc
Q 003557 213 ASYYKATLAVTTGL-SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNT-YKEIGRVTDAIQDYIRAITI 290 (811)
Q Consensus 213 ~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~ 290 (811)
...+++++.....+ ..++..+.+.-.+..-.+.|...|.++-+..-....++..-|.+ |...++.+-|..+|+-.++.
T Consensus 351 ~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkk 430 (656)
T KOG1914|consen 351 HEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKK 430 (656)
T ss_pred HHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHh
Confidence 77888888765433 34566666666777778999999999987654443444444433 45678999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCC-ChHHHHHHHHHhhhcCChhhH
Q 003557 291 RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL--RPD-FPEATCNLLHTLQCVCSWEDR 348 (811)
Q Consensus 291 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~-~~~~~~~l~~~~~~~~~~~~a 348 (811)
.++.+..-......+...++-..|...|++++.. .|+ ..+.|..++.--...|+....
T Consensus 431 f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 431 FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 9999999999999999999999999999999987 333 235555555555555664443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=7e-06 Score=80.15 Aligned_cols=98 Identities=26% Similarity=0.284 Sum_probs=61.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 003557 27 HSNLGNLMKAQGLVQEAYSCYLEALRIQPTF---AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF---PDAYLNLGN 100 (811)
Q Consensus 27 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 100 (811)
.+..+.-+++.|+|.+|...|...++..|+. +.+++.||.+++.+|+++.|...|..+.+..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5556666666666666666666666666654 4566666666666666666666666666654433 455666666
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCC
Q 003557 101 VYKALGMPQEAIMCYQRAVQTRPN 124 (811)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~ 124 (811)
+...+|+.++|...|+++++..|+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCC
Confidence 666666666666666666666665
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.5e-06 Score=67.93 Aligned_cols=69 Identities=29% Similarity=0.474 Sum_probs=53.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 003557 234 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302 (811)
Q Consensus 234 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 302 (811)
..+|...+++++|+++++++++.+|+++..+..+|.++...|++++|.+.++++++..|+++.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 456777788888888888888888888888888888888888888888888888888887776655443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.2e-05 Score=70.95 Aligned_cols=85 Identities=22% Similarity=0.202 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHH
Q 003557 23 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF---AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD---AYL 96 (811)
Q Consensus 23 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 96 (811)
.+..++..|...++.|+|++|++.|+.+....|.. ..+...++.+|+..+++++|+..+++.++++|.++. +++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45678888888999999999999999888887764 678888899999999999999999999999887754 677
Q ss_pred HHHHHHHHcCC
Q 003557 97 NLGNVYKALGM 107 (811)
Q Consensus 97 ~la~~~~~~g~ 107 (811)
..|.++..+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 77777776654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0087 Score=64.85 Aligned_cols=338 Identities=11% Similarity=0.039 Sum_probs=220.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 003557 6 LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM-ESGDLNRALQYYKEA 84 (811)
Q Consensus 6 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~a 84 (811)
.+.+...|...+...|.....|...|..-.+.|..+.+...|++.+.--|-....|..+-.... ..|+.+.-...|++|
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3566778888888899999999999999999999999999999999988888777776555443 456777778888888
Q ss_pred HhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----------------------hhHHHhHHHHHH--
Q 003557 85 VKLKPTF---PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-----------------------AIAFGNLASTYY-- 136 (811)
Q Consensus 85 l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----------------------~~~~~~la~~~~-- 136 (811)
......+ ...|-.....-..++++..-...|++.++.--. .+....+..--.
T Consensus 141 ~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~ 220 (577)
T KOG1258|consen 141 KSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAER 220 (577)
T ss_pred HHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhh
Confidence 8764432 234555555556666666666666666553100 000000000000
Q ss_pred ----------------------HcCCHHHHHHHHHHH------------------------HHc--------CCCcHHHH
Q 003557 137 ----------------------ERGQADMAILYYKQA------------------------IGC--------DPRFLEAY 162 (811)
Q Consensus 137 ----------------------~~g~~~~A~~~~~~a------------------------l~~--------~p~~~~~~ 162 (811)
..+.++++...+.+. ++. ++.....|
T Consensus 221 ~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw 300 (577)
T KOG1258|consen 221 SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNW 300 (577)
T ss_pred hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHH
Confidence 001112222111111 100 11223456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHcC
Q 003557 163 NNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-TGLSAPFNNLAVIYKQQG 241 (811)
Q Consensus 163 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g 241 (811)
......-...|+++...-.|++++--.....+.|...+......|+.+-|...+..+.+.. +..+.+...-+..-...|
T Consensus 301 ~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~ 380 (577)
T KOG1258|consen 301 RYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNG 380 (577)
T ss_pred HHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhc
Confidence 6666666777888888888888877666777788888888888888888887777777664 455566666677777778
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHH---HHHHHHHhcCCCc---HHHHHHHHHHHH-hCCCHHHH
Q 003557 242 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAI---QDYIRAITIRPTM---AEAHANLASAYK-DSGHVEAA 314 (811)
Q Consensus 242 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~---~~~~~al~~~p~~---~~~~~~la~~~~-~~g~~~~A 314 (811)
++..|...+++..+..|+...+-...+.....+|+.+.+. +++.....-..+. ...+...+.... -.++.+.|
T Consensus 381 n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a 460 (577)
T KOG1258|consen 381 NFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLA 460 (577)
T ss_pred cHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888888888777877777777777788888888777 3333333222111 223444454433 36788888
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHhhhcC
Q 003557 315 IKSYKQALLLRPDFPEATCNLLHTLQCVC 343 (811)
Q Consensus 315 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 343 (811)
...+.++++..|++...+..+.......+
T Consensus 461 ~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 461 RIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 88888888888888877777666555433
|
|
| >COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-05 Score=86.72 Aligned_cols=173 Identities=18% Similarity=0.071 Sum_probs=122.6
Q ss_pred CcCCCCCCC--CcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCeEEEeecCCh-hhHHHHHHHHHHcCCCCCceEEcCC
Q 003557 592 KRSDYGLPE--DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPA-AGEMRLRAYAVAQGVQPDQIIFTDV 666 (811)
Q Consensus 592 ~r~~~gl~~--~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~-~~~~~l~~~~~~~gi~~~rv~~~~~ 666 (811)
++..+||+. +.++|+.++|+ +|..+.++++.-.+++.. .+++++|.|. .-++.+...+..+. +++.+.-.
T Consensus 282 L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~--~~~vilG~gd~~le~~~~~la~~~~---~~~~~~i~ 356 (487)
T COG0297 282 LQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELLEQG--WQLVLLGTGDPELEEALRALASRHP---GRVLVVIG 356 (487)
T ss_pred HHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHHHhC--ceEEEEecCcHHHHHHHHHHHHhcC---ceEEEEee
Confidence 677889983 56899999988 599999999999998877 8899998762 22456666666553 35444433
Q ss_pred CChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCcccc-------------
Q 003557 667 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV------------- 732 (811)
Q Consensus 667 ~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~------------- 732 (811)
-+..-....|..+|++|-|+.+++ |.|-++||..|.+.| +.++| ||.+ .|.
T Consensus 357 ~~~~la~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpI-------v~~tG-------GLad-TV~~~~~~~~~~~gtG 421 (487)
T COG0297 357 YDEPLAHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPI-------VRETG-------GLAD-TVVDRNEWLIQGVGTG 421 (487)
T ss_pred ecHHHHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcce-------EcccC-------Cccc-eecCccchhccCceeE
Confidence 343444556899999999999999 999999999999877 45555 6665 443
Q ss_pred -----CCHHHHH---HHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHH
Q 003557 733 -----NSMKEYE---ERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 788 (811)
Q Consensus 733 -----~~~~~y~---~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 788 (811)
.+++++. ..|..+..++... ++...+..+ ...|+++..+.+..+.|+.+...
T Consensus 422 f~f~~~~~~~l~~al~rA~~~y~~~~~~--w~~~~~~~m--~~d~sw~~sa~~y~~lY~~~~~~ 481 (487)
T COG0297 422 FLFLQTNPDHLANALRRALVLYRAPPLL--WRKVQPNAM--GADFSWDLSAKEYVELYKPLLSK 481 (487)
T ss_pred EEEecCCHHHHHHHHHHHHHHhhCCHHH--HHHHHHhhc--ccccCchhHHHHHHHHHHHHhcc
Confidence 2555554 3455555565552 222223333 35699999999999999988764
|
|
| >TIGR03492 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.4e-05 Score=86.51 Aligned_cols=173 Identities=16% Similarity=0.090 Sum_probs=109.0
Q ss_pred CCCCCcEEEEec--CCC---CCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCC-------------
Q 003557 597 GLPEDKFIFACF--NQL---YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQP------------- 658 (811)
Q Consensus 597 gl~~~~~~~~~~--~~~---~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~------------- 658 (811)
|++++..+++.+ +|. .+..|.++++..++.++ |+..+++.-.+....+.+++...+.|+..
T Consensus 200 ~l~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~-~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 278 (396)
T TIGR03492 200 PLLTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDS-QPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQK 278 (396)
T ss_pred ccCCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhC-CCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhcc
Confidence 666554444433 332 25567888888888666 77777665323223566777777667632
Q ss_pred CceEEcCCCChHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHHHHHhc----CCCCccccCC
Q 003557 659 DQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLAT----GLGEEMIVNS 734 (811)
Q Consensus 659 ~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~----g~~~~~v~~~ 734 (811)
+.+.+.+ ...+....++.+|++|-. +|+++.|++.+|+|+|+.+++.. ...+.++... |-...++..+
T Consensus 279 ~~~~v~~--~~~~~~~~l~~ADlvI~r----SGt~T~E~a~lg~P~Ilip~~~~--q~na~~~~~~~~l~g~~~~l~~~~ 350 (396)
T TIGR03492 279 GTLEVLL--GRGAFAEILHWADLGIAM----AGTATEQAVGLGKPVIQLPGKGP--QFTYGFAEAQSRLLGGSVFLASKN 350 (396)
T ss_pred CceEEEe--chHhHHHHHHhCCEEEEC----cCHHHHHHHHhCCCEEEEeCCCC--HHHHHHHHhhHhhcCCEEecCCCC
Confidence 1244443 234566778999999965 44666999999999999985433 2344444432 4333123456
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHH
Q 003557 735 MKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLER 780 (811)
Q Consensus 735 ~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 780 (811)
++..++.+.+|..|++.+.+|++..+.++ ..-...+++++.+.+
T Consensus 351 ~~~l~~~l~~ll~d~~~~~~~~~~~~~~l--g~~~a~~~ia~~i~~ 394 (396)
T TIGR03492 351 PEQAAQVVRQLLADPELLERCRRNGQERM--GPPGASARIAESILK 394 (396)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 78899999999999999988886555544 222445555554443
|
This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00026 Score=66.69 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=71.6
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH-------H
Q 003557 232 NLAVIYKQQ-GNYADAISCYNEVLRIDPLA------ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE-------A 297 (811)
Q Consensus 232 ~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~ 297 (811)
.+|.+|... .++++|+.+|+++-+..... ...+...+..-...++|.+|+..|++.....-++.- .
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 455555543 67777777777776553322 235566677777888999999999988776544432 3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHH
Q 003557 298 HANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 332 (811)
Q Consensus 298 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 332 (811)
++.-|.|+.-..+.-.+...+++..+++|...+..
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 45567778888899999999999999999876654
|
|
| >cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00018 Score=79.03 Aligned_cols=141 Identities=11% Similarity=0.122 Sum_probs=91.8
Q ss_pred CcEEEEecCCCC-CCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCC
Q 003557 601 DKFIFACFNQLY-KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 679 (811)
Q Consensus 601 ~~~~~~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~ 679 (811)
..+||.+++... +....+++...+.++..+.-.++..|.... .. ..+ +++|.+.++.+..+.+ ..+
T Consensus 239 ~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~-~~--------~~~-~~~v~~~~~~p~~~ll---~~~ 305 (401)
T cd03784 239 RPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGL-GA--------EDL-PDNVRVVDFVPHDWLL---PRC 305 (401)
T ss_pred CCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccc-cc--------cCC-CCceEEeCCCCHHHHh---hhh
Confidence 456777777654 344566666666666666555566665432 11 234 6889999988766655 669
Q ss_pred cEEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHHHH
Q 003557 680 DLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQALT 756 (811)
Q Consensus 680 Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~---~~~~y~~~~~~l~~d~~~~~~~~ 756 (811)
|+|+ ..+|.+|+.||+++|||+|.++-..- .-..+..+...|..- .+.. ++++..+.+.++.+++ .+++.+
T Consensus 306 d~~I---~hgG~~t~~eal~~GvP~v~~P~~~d-Q~~~a~~~~~~G~g~-~l~~~~~~~~~l~~al~~~l~~~-~~~~~~ 379 (401)
T cd03784 306 AAVV---HHGGAGTTAAALRAGVPQLVVPFFGD-QPFWAARVAELGAGP-ALDPRELTAERLAAALRRLLDPP-SRRRAA 379 (401)
T ss_pred heee---ecCCchhHHHHHHcCCCEEeeCCCCC-cHHHHHHHHHCCCCC-CCCcccCCHHHHHHHHHHHhCHH-HHHHHH
Confidence 9998 66778999999999999998864321 222345566677765 4432 6788887777877754 444444
Q ss_pred HHHH
Q 003557 757 NKLK 760 (811)
Q Consensus 757 ~~~~ 760 (811)
+..+
T Consensus 380 ~~~~ 383 (401)
T cd03784 380 ALLR 383 (401)
T ss_pred HHHH
Confidence 4433
|
Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics. |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0078 Score=62.98 Aligned_cols=352 Identities=17% Similarity=0.114 Sum_probs=200.1
Q ss_pred CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC---CCc----HHHHHHHHHHHHHcC-
Q 003557 5 RLNEAAQCCRQALALNPLL---VDAHSNLGNLMK-AQGLVQEAYSCYLEALRIQ---PTF----AIAWSNLAGLFMESG- 72 (811)
Q Consensus 5 ~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~---p~~----~~~~~~la~~~~~~g- 72 (811)
+..+++++++..+...|.+ +.....+|.+++ ...+.+.|...++++..+. |+. .++...++.+|....
T Consensus 24 kIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~ 103 (629)
T KOG2300|consen 24 KIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQ 103 (629)
T ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcC
Confidence 5778888888888777653 345667777655 4788999999999987653 332 467788899998887
Q ss_pred CHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhh-CCChhHH----HhH--HHHHHHcCCH
Q 003557 73 DLNRALQYYKEAVKLKPTFPD----AYLNLGNVYKALGMPQEAIMCYQRAVQT-RPNAIAF----GNL--ASTYYERGQA 141 (811)
Q Consensus 73 ~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~----~~l--a~~~~~~g~~ 141 (811)
.+..|...+++++++..+.+. ..+.+++++.-..++..|++.+.--.+. ++....| +.+ +.++....+.
T Consensus 104 s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~ 183 (629)
T KOG2300|consen 104 SFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDD 183 (629)
T ss_pred CCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccH
Confidence 888999999999998777654 5677888888899999998885433222 2222222 222 2222223333
Q ss_pred H---HHHHHHHHHHHcCCCcH---H----HHHHHHH-HHHHcCCHHHHHHHHHHHHh---c-CCC------------ChH
Q 003557 142 D---MAILYYKQAIGCDPRFL---E----AYNNLGN-ALKDVGRVDEAIQCYNQCLS---L-QPS------------HPQ 194 (811)
Q Consensus 142 ~---~A~~~~~~al~~~p~~~---~----~~~~la~-~~~~~g~~~~A~~~~~~al~---~-~p~------------~~~ 194 (811)
. .+.....++.+....+. + .|..+-. .|...|+...+...+++.-+ . .+. .+.
T Consensus 184 ~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~ 263 (629)
T KOG2300|consen 184 YDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPI 263 (629)
T ss_pred HHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChH
Confidence 3 33333334433222221 1 1222222 23445666555555544322 1 111 000
Q ss_pred -----------HHHHHHH--HHHHcCChHHHHHHHHHHHhccCC------Cch--------HHHHHHHHHHHcCCHHHHH
Q 003557 195 -----------ALTNLGN--IYMEWNMLPAAASYYKATLAVTTG------LSA--------PFNNLAVIYKQQGNYADAI 247 (811)
Q Consensus 195 -----------~~~~la~--~~~~~g~~~~A~~~~~~~l~~~~~------~~~--------~~~~la~~~~~~g~~~~A~ 247 (811)
++..+.. --...|-+++|.++-++++..... ... .+-.++.+-.-.|++.+|+
T Consensus 264 l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al 343 (629)
T KOG2300|consen 264 LFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEAL 343 (629)
T ss_pred HHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 1111111 011345566676666666644211 111 1334556666777888777
Q ss_pred HHHHHHHhc---CCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcH--HHHHHHHHHHHhCCCHHHH
Q 003557 248 SCYNEVLRI---DPL-------AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP-TMA--EAHANLASAYKDSGHVEAA 314 (811)
Q Consensus 248 ~~~~~al~~---~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~--~~~~~la~~~~~~g~~~~A 314 (811)
+....+.+. .|. .+..+..+|.....-+.++.|...|..+.+.-. .+. -.-.++|..|...|+-+.-
T Consensus 344 ~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~ 423 (629)
T KOG2300|consen 344 EEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDL 423 (629)
T ss_pred HHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHH
Confidence 777666554 232 234566677777777778888877777776532 222 2345667777776665544
Q ss_pred HHHHHHHHhcCCCC----------hHHHHHHHHHhhhcCChhhHhHHHHHHHHHH
Q 003557 315 IKSYKQALLLRPDF----------PEATCNLLHTLQCVCSWEDRDRMFSEVEGII 359 (811)
Q Consensus 315 ~~~~~~al~~~p~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l~ 359 (811)
.+.++. +.|.| ..+++..+...+..+++.||.....+..+.-
T Consensus 424 y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 424 YKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 443333 33432 2344555566667777777777776665544
|
|
| >PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.4e-05 Score=91.26 Aligned_cols=178 Identities=12% Similarity=0.106 Sum_probs=126.2
Q ss_pred CcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhcCCeE--EEee--c-----CChhhHHHHHHHHH--------
Q 003557 592 KRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPNSA--LWLL--R-----FPAAGEMRLRAYAV-------- 652 (811)
Q Consensus 592 ~r~~~gl~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~--l~l~--~-----~~~~~~~~l~~~~~-------- 652 (811)
+|+.++ +..++.++.|+. |+.+.-+.+|.++|+..|+-+ ++|+ . .++. -+.++..+.
T Consensus 356 lr~~~~---g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~e-Y~~l~~~V~~~V~rIN~ 431 (934)
T PLN03064 356 LKERFA---GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPE-YQKLTSQVHEIVGRING 431 (934)
T ss_pred HHHHhC---CceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHH-HHHHHHHHHHHHHHHhh
Confidence 455554 456788888884 999999999999999999843 4443 2 2222 234444442
Q ss_pred HcCCC-CCceEEcC-CCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHh-----CCCcccccCCccccchhHH-HHHh
Q 003557 653 AQGVQ-PDQIIFTD-VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWA-----GLPMITLPLEKMATRVAGS-LCLA 723 (811)
Q Consensus 653 ~~gi~-~~rv~~~~-~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~-----g~Pvvt~~g~~~~~r~~~~-~l~~ 723 (811)
+.|-. -.=|++.. ..+..+.+++|..+||||.|+...| ++++.|++++ |++|++ .-.|++ .|
T Consensus 432 ~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILS-------EfaGaa~~L-- 502 (934)
T PLN03064 432 RFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILS-------EFAGAAQSL-- 502 (934)
T ss_pred hccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEe-------CCCchHHHh--
Confidence 23431 11256555 4688999999999999999999999 9999999999 666661 222221 22
Q ss_pred cCCCCcccc--CCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 003557 724 TGLGEEMIV--NSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 787 (811)
Q Consensus 724 ~g~~~~~v~--~~~~~y~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 787 (811)
|-.. +++ .|.++.++.+.+.++ +++.+....+.+++.+.. +|...+++.+.......+.
T Consensus 503 -~~~A-llVNP~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~---~d~~~Wa~~fl~~L~~~~~ 564 (934)
T PLN03064 503 -GAGA-ILVNPWNITEVAASIAQALNMPEEEREKRHRHNFMHVTT---HTAQEWAETFVSELNDTVV 564 (934)
T ss_pred -CCce-EEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccc---CCHHHHHHHHHHHHHHHHh
Confidence 2222 332 488898888888776 899999999999888754 8999999998887777764
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0072 Score=63.23 Aligned_cols=324 Identities=16% Similarity=0.095 Sum_probs=209.5
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCc---HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcC---CCC---
Q 003557 24 VDAHSNLGNLMKAQG--LVQEAYSCYLEALRIQPTF---AIAWSNLAGLF-MESGDLNRALQYYKEAVKLK---PTF--- 91 (811)
Q Consensus 24 ~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~---p~~--- 91 (811)
..++..++..+...| +..+++++++......|.. +.....+|.++ ....+.+.|...++++..+. |+.
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 356778888888899 8999999999998887765 55667777754 45789999999999998764 332
Q ss_pred -HHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCC-----hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----H
Q 003557 92 -PDAYLNLGNVYKALG-MPQEAIMCYQRAVQTRPN-----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL----E 160 (811)
Q Consensus 92 -~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~ 160 (811)
.++...++.+|.... .+..|...+.+++++..+ ....+.++++..-..++..|.+.+.-..+....-. .
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr 166 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLR 166 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHH
Confidence 236778889988877 788999999999998655 45667889999999999999988543222111111 1
Q ss_pred HHHHH--HHHHHHcCCH---HHHHHHHHHHHhcCCCChH-------HHHHHHH-HHHHcCChHHHHHHHHHHHh---c-c
Q 003557 161 AYNNL--GNALKDVGRV---DEAIQCYNQCLSLQPSHPQ-------ALTNLGN-IYMEWNMLPAAASYYKATLA---V-T 223 (811)
Q Consensus 161 ~~~~l--a~~~~~~g~~---~~A~~~~~~al~~~p~~~~-------~~~~la~-~~~~~g~~~~A~~~~~~~l~---~-~ 223 (811)
..+.+ +.++....+. ..+.....++.+....|+. .+..+-. .|...|+...+...+++... . .
T Consensus 167 ~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtis 246 (629)
T KOG2300|consen 167 MLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIS 246 (629)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccC
Confidence 22222 2333333333 3444444555544333331 2223332 34456776666655554432 1 1
Q ss_pred CC-----------C-chH--HHH----HHHHH-------HHcCCHHHHHHHHHHHHhcC------CCCH--------HHH
Q 003557 224 TG-----------L-SAP--FNN----LAVIY-------KQQGNYADAISCYNEVLRID------PLAA--------DGL 264 (811)
Q Consensus 224 ~~-----------~-~~~--~~~----la~~~-------~~~g~~~~A~~~~~~al~~~------p~~~--------~~~ 264 (811)
+. + +.. |.- -+.+| ...|-+++|.++-++++... +... ..+
T Consensus 247 t~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~L 326 (629)
T KOG2300|consen 247 TSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILL 326 (629)
T ss_pred CCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 11 0 000 000 01111 14566788888877776542 1111 234
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc---CCC-------cHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-h--HH
Q 003557 265 VNRGNTYKEIGRVTDAIQDYIRAITI---RPT-------MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF-P--EA 331 (811)
Q Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~---~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~--~~ 331 (811)
-.+..+-.-.|++.+|++....+.+. .|. .+..++.+|.....-+.++.|...|..+.++-.+. - ..
T Consensus 327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~ 406 (629)
T KOG2300|consen 327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFC 406 (629)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 55677788899999999988888765 344 35678889999999999999999999999875432 2 23
Q ss_pred HHHHHHHhhhcCChhh
Q 003557 332 TCNLLHTLQCVCSWED 347 (811)
Q Consensus 332 ~~~l~~~~~~~~~~~~ 347 (811)
..|++..|...++-++
T Consensus 407 nlnlAi~YL~~~~~ed 422 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAED 422 (629)
T ss_pred HHhHHHHHHHhccHHH
Confidence 4577888888776544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0082 Score=62.48 Aligned_cols=120 Identities=9% Similarity=-0.116 Sum_probs=82.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 003557 2 RKGRLNEAAQCCRQALALNPLLV-----DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 76 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 76 (811)
+++++.+|.++|.++.+...+.+ +.+..+....+-+++.+.-...+...-+..|..+....-.+...++.+++.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~k 97 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRK 97 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHH
Confidence 46889999999999877654443 2333333333445666666666666666778877777888888889999999
Q ss_pred HHHHHHHHHhcCCCCH-------------H--HHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 003557 77 ALQYYKEAVKLKPTFP-------------D--AYLNLGNVYKALGMPQEAIMCYQRAVQT 121 (811)
Q Consensus 77 A~~~~~~al~~~p~~~-------------~--~~~~la~~~~~~g~~~~A~~~~~~al~~ 121 (811)
|++.+....+.-..+. + .-...+.++...|++.++...+++.+..
T Consensus 98 al~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 98 ALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 9888877655411110 1 1234577888899999999888887764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00079 Score=75.80 Aligned_cols=262 Identities=14% Similarity=0.157 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHH
Q 003557 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYE 137 (811)
Q Consensus 58 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~ 137 (811)
+..|..+|.+..+.|...+|++.|-++ +++..|........+.|.|++-+.++.-+.+....+..-..+...|.+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAk 1178 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAK 1178 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence 556666666666666666666666554 455556666666666666666666666555544443444444555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHH
Q 003557 138 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYK 217 (811)
Q Consensus 138 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 217 (811)
.++..+-.+.. ..|+.. -....|.-++..|.|+.|.-+|.. ..-|..++..+...|+|..|...-+
T Consensus 1179 t~rl~elE~fi-----~gpN~A-~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1179 TNRLTELEEFI-----AGPNVA-NIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred hchHHHHHHHh-----cCCCch-hHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 55554433322 133333 234455556666666666555543 2334556666666666666666555
Q ss_pred HHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHH
Q 003557 218 ATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA 297 (811)
Q Consensus 218 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 297 (811)
++- +...|...+......+.+.-|.-+=-.. --+++-+-.+...|...|-+++-+..++.++.+...+-..
T Consensus 1245 KAn-----s~ktWK~VcfaCvd~~EFrlAQiCGL~i----ivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgm 1315 (1666)
T KOG0985|consen 1245 KAN-----STKTWKEVCFACVDKEEFRLAQICGLNI----IVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGM 1315 (1666)
T ss_pred hcc-----chhHHHHHHHHHhchhhhhHHHhcCceE----EEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHH
Confidence 542 3344555555555444444332211000 0123445667778888899999999999888888777778
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcC--------CCChHHHHHHHHHhhhcCChhhH
Q 003557 298 HANLASAYKDSGHVEAAIKSYKQALLLR--------PDFPEATCNLLHTLQCVCSWEDR 348 (811)
Q Consensus 298 ~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~a 348 (811)
+..||.+|.+- ++++-.+.++-....- -+....|..+..+|.+-..|+.|
T Consensus 1316 fTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1316 FTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 88888877654 3455555444333210 11223455566666655555544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.2e-05 Score=68.04 Aligned_cols=99 Identities=20% Similarity=0.311 Sum_probs=78.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHh
Q 003557 232 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM----AEAHANLASAYKD 307 (811)
Q Consensus 232 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~ 307 (811)
.-|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|++.+++++++..+. -.++...|.+|..
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 346667777888888888888888888888888888888888888888888888888875433 3467778888888
Q ss_pred CCCHHHHHHHHHHHHhcCCCChH
Q 003557 308 SGHVEAAIKSYKQALLLRPDFPE 330 (811)
Q Consensus 308 ~g~~~~A~~~~~~al~~~p~~~~ 330 (811)
.|+.+.|..-|+.+-++......
T Consensus 128 ~g~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred hCchHHHHHhHHHHHHhCCHHHH
Confidence 89999998888888888765543
|
|
| >TIGR02919 accessory Sec system glycosyltransferase GtfB | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.3e-05 Score=86.83 Aligned_cols=132 Identities=10% Similarity=0.137 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCC-hhHH
Q 003557 616 PEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTG 694 (811)
Q Consensus 616 ~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~ 694 (811)
...++++.++.+++|++.|-| |.+..-..+|.+. .+. ++-+.|.|..+ .+.-..|+.||++||++..+| +.++
T Consensus 291 s~~I~~i~~Lv~~lPd~~f~I-ga~te~s~kL~~L-~~y---~nvvly~~~~~-~~l~~ly~~~dlyLdin~~e~~~~al 364 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYHFHI-AALTEMSSKLMSL-DKY---DNVKLYPNITT-QKIQELYQTCDIYLDINHGNEILNAV 364 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEEE-EecCcccHHHHHH-Hhc---CCcEEECCcCh-HHHHHHHHhccEEEEccccccHHHHH
Confidence 899999999999999999998 6554434677776 655 45566666544 344466899999999999999 9999
Q ss_pred HHHHHhCCCcccccCCccccchhHHHHHhcCCCCccc-cCCHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 003557 695 TDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI-VNSMKEYEERAVSLALDRQKLQALTNKLKS 761 (811)
Q Consensus 695 ~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v-~~~~~~y~~~~~~l~~d~~~~~~~~~~~~~ 761 (811)
.||+..|+|||+..-......... . .. ++ ..++++++++++.+.+|++..+..-..-++
T Consensus 365 ~eA~~~G~pI~afd~t~~~~~~i~------~-g~-l~~~~~~~~m~~~i~~lL~d~~~~~~~~~~q~~ 424 (438)
T TIGR02919 365 RRAFEYNLLILGFEETAHNRDFIA------S-EN-IFEHNEVDQLISKLKDLLNDPNQFRELLEQQRE 424 (438)
T ss_pred HHHHHcCCcEEEEecccCCccccc------C-Cc-eecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999998764433222210 0 11 22 358899999999999999875554443333
|
Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. |
| >COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00054 Score=74.25 Aligned_cols=164 Identities=16% Similarity=0.177 Sum_probs=110.1
Q ss_pred CCC-CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhc
Q 003557 598 LPE-DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS 676 (811)
Q Consensus 598 l~~-~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 676 (811)
++. ..++|.+++...-. .++++...+.+...|...++-.|. . +. ...++ ++.+...++.+..+.+
T Consensus 233 ~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~--~-~~------~~~~~-p~n~~v~~~~p~~~~l--- 298 (406)
T COG1819 233 IPADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG--A-RD------TLVNV-PDNVIVADYVPQLELL--- 298 (406)
T ss_pred hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc--c-cc------ccccC-CCceEEecCCCHHHHh---
Confidence 444 34667777744322 667766666666676444443332 1 11 12356 7889999988877766
Q ss_pred CCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHH
Q 003557 677 SLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQ 753 (811)
Q Consensus 677 ~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~---~~~~~y~~~~~~l~~d~~~~~ 753 (811)
..+|+|+ ..+|.+|+.|||..|||+|.++.. +-.-.-+.-+..+|... .+- -+++...+...++.+|+..++
T Consensus 299 ~~ad~vI---~hGG~gtt~eaL~~gvP~vv~P~~-~DQ~~nA~rve~~G~G~-~l~~~~l~~~~l~~av~~vL~~~~~~~ 373 (406)
T COG1819 299 PRADAVI---HHGGAGTTSEALYAGVPLVVIPDG-ADQPLNAERVEELGAGI-ALPFEELTEERLRAAVNEVLADDSYRR 373 (406)
T ss_pred hhcCEEE---ecCCcchHHHHHHcCCCEEEecCC-cchhHHHHHHHHcCCce-ecCcccCCHHHHHHHHHHHhcCHHHHH
Confidence 6699997 567799999999999999998865 22223446666778876 443 578888888889999998888
Q ss_pred HHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 003557 754 ALTNKLKSVRLTCPLFDTARWVKNLERSYF 783 (811)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 783 (811)
..++..+... +.-..+..++.+|+..+
T Consensus 374 ~~~~~~~~~~---~~~g~~~~a~~le~~~~ 400 (406)
T COG1819 374 AAERLAEEFK---EEDGPAKAADLLEEFAR 400 (406)
T ss_pred HHHHHHHHhh---hcccHHHHHHHHHHHHh
Confidence 7666554433 22346667777777654
|
|
| >TIGR01426 MGT glycosyltransferase, MGT family | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.9e-05 Score=84.95 Aligned_cols=163 Identities=13% Similarity=0.219 Sum_probs=108.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCc
Q 003557 601 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 680 (811)
Q Consensus 601 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~D 680 (811)
..+||.+++......+.+++...+.+...|--.++..|.+.. ...+. .+ +++|.+.++.+..+. +..+|
T Consensus 225 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~-~~~~~------~~-~~~v~~~~~~p~~~l---l~~~~ 293 (392)
T TIGR01426 225 RPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD-PADLG------EL-PPNVEVRQWVPQLEI---LKKAD 293 (392)
T ss_pred CCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC-hhHhc------cC-CCCeEEeCCCCHHHH---HhhCC
Confidence 447888998876666667776677777777555555565432 22221 24 578999998886554 46799
Q ss_pred EEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHHHH
Q 003557 681 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQALTN 757 (811)
Q Consensus 681 v~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~---~~~~~y~~~~~~l~~d~~~~~~~~~ 757 (811)
+++ ..+|..|++|||.+|+|+|+.+...-.. .-+..+...|... .+. -++++..+.+.++..|++.++.+++
T Consensus 294 ~~I---~hgG~~t~~Eal~~G~P~v~~p~~~dq~-~~a~~l~~~g~g~-~l~~~~~~~~~l~~ai~~~l~~~~~~~~~~~ 368 (392)
T TIGR01426 294 AFI---THGGMNSTMEALFNGVPMVAVPQGADQP-MTARRIAELGLGR-HLPPEEVTAEKLREAVLAVLSDPRYAERLRK 368 (392)
T ss_pred EEE---ECCCchHHHHHHHhCCCEEecCCcccHH-HHHHHHHHCCCEE-EeccccCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 998 4566789999999999999987543322 3345566677765 442 2578888888899999987666543
Q ss_pred HHHhhcccCCCCChHHHHHHHHHHH
Q 003557 758 KLKSVRLTCPLFDTARWVKNLERSY 782 (811)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~e~~y 782 (811)
+++.+. ..-..++.++.+|+..
T Consensus 369 -l~~~~~--~~~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 369 -MRAEIR--EAGGARRAADEIEGFL 390 (392)
T ss_pred -HHHHHH--HcCCHHHHHHHHHHhh
Confidence 333332 2245667777777654
|
This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.21 E-value=3e-05 Score=68.43 Aligned_cols=81 Identities=23% Similarity=0.293 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----hhHHHh
Q 003557 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF---PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIAFGN 130 (811)
Q Consensus 58 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~ 130 (811)
+..++.-|...++.|+|++|++.|+.+....|.. ..+...++.+|++.+++++|+..+++.++++|+ ..+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3455555555555666666666666555554432 235555555555555555555555555555554 334444
Q ss_pred HHHHHHHc
Q 003557 131 LASTYYER 138 (811)
Q Consensus 131 la~~~~~~ 138 (811)
.|.+++..
T Consensus 90 ~gL~~~~~ 97 (142)
T PF13512_consen 90 RGLSYYEQ 97 (142)
T ss_pred HHHHHHHH
Confidence 44444433
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=1e-05 Score=84.79 Aligned_cols=69 Identities=28% Similarity=0.261 Sum_probs=57.6
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 003557 256 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA---HANLASAYKDSGHVEAAIKSYKQALLL 324 (811)
Q Consensus 256 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 324 (811)
.+|+++..++++|.+|...|++++|+..|+++++++|++.++ |+++|.+|..+|++++|++++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 367778888888888888888888888888888888888754 888888888888888888888888886
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0014 Score=62.96 Aligned_cols=226 Identities=13% Similarity=0.084 Sum_probs=160.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------------------H-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 003557 23 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF------------------A-IAWSNLAGLFMESGDLNRALQYYKE 83 (811)
Q Consensus 23 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------------------~-~~~~~la~~~~~~g~~~~A~~~~~~ 83 (811)
....|...-.++.+....++|...+...-+.+..+ + ......|.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 34456666667777788888877766554443111 1 1222345556667777777666655
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHH
Q 003557 84 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCD-PRFLEAY 162 (811)
Q Consensus 84 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 162 (811)
.... ...+..........+..++.+++-+ ..+.+.+..++.-.|.|.-....+.+.++.+ |..+...
T Consensus 148 L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl-----~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~ 215 (366)
T KOG2796|consen 148 LKTV-------VSKILANLEQGLAEESSIRLWRKRL-----GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLL 215 (366)
T ss_pred HHHH-------HHHHHHHHHhccchhhHHHHHHHHH-----HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHH
Confidence 5322 1122222222333355555555543 3456677888888899999999999999877 5677778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC------CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHH
Q 003557 163 NNLGNALKDVGRVDEAIQCYNQCLSLQ------PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVI 236 (811)
Q Consensus 163 ~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 236 (811)
..++.+.++.|+.+.|..+++..-+.. ..+..+..+.+.++.-.+++.+|...+.+++..++.++.+.++.|.+
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc 295 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC 295 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence 889999999999999999998654432 22345677788888889999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC
Q 003557 237 YKQQGNYADAISCYNEVLRIDPLA 260 (811)
Q Consensus 237 ~~~~g~~~~A~~~~~~al~~~p~~ 260 (811)
+...|+..+|++.++.+++..|..
T Consensus 296 llYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 296 LLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcc
Confidence 999999999999999999998864
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00075 Score=73.28 Aligned_cols=284 Identities=17% Similarity=0.195 Sum_probs=151.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH------HHHh----CCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 003557 27 HSNLGNLMKAQGLVQEAYSCYLE------ALRI----QPTFA-IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAY 95 (811)
Q Consensus 27 ~~~l~~~~~~~g~~~~A~~~~~~------al~~----~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 95 (811)
|-.-|.++.+..++++|+++|++ ++++ .|... ..-..-|.-+...|+++.|+..|-++- ..
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~--------~~ 735 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN--------CL 735 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh--------hH
Confidence 34445666666777788877764 2332 23321 122233555666778888877776542 12
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCH
Q 003557 96 LNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV 175 (811)
Q Consensus 96 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 175 (811)
..-........+|.+|+..++.....+.....|-.++.-|...|+++.|.++|.++- ........|.+.|++
T Consensus 736 ~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 736 IKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccH
Confidence 222334445566777777766665444445566677777778888888877776642 223334566677777
Q ss_pred HHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHcCChHHHHH-------------HHHHHHh----------ccCC-CchHH
Q 003557 176 DEAIQCYNQCLSLQPSH-PQALTNLGNIYMEWNMLPAAAS-------------YYKATLA----------VTTG-LSAPF 230 (811)
Q Consensus 176 ~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~-------------~~~~~l~----------~~~~-~~~~~ 230 (811)
++|.++-+++. .|.. ...|...+.-+-+.|++.+|.+ .|++.-. ..++ -.+.+
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~ 885 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTH 885 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHH
Confidence 77766655543 2222 2233444444444444444433 3332110 1111 12345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc------C-----------------CCCHH--HHHH---------HHHHHHHhCC
Q 003557 231 NNLAVIYKQQGNYADAISCYNEVLRI------D-----------------PLAAD--GLVN---------RGNTYKEIGR 276 (811)
Q Consensus 231 ~~la~~~~~~g~~~~A~~~~~~al~~------~-----------------p~~~~--~~~~---------la~~~~~~g~ 276 (811)
..++.-|...|+...|...|-++-+. . ..+.+ ..+. ...++.+.|-
T Consensus 886 ~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gl 965 (1636)
T KOG3616|consen 886 KHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGL 965 (1636)
T ss_pred HHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhh
Confidence 56677777777777776666554221 0 01111 0111 1123334455
Q ss_pred HHHHHHHH------HHHHhc-----CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Q 003557 277 VTDAIQDY------IRAITI-----RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 328 (811)
Q Consensus 277 ~~~A~~~~------~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 328 (811)
.+.|+..- +-+..+ ....++++..++..+...|++++|-+.|-++++++.-+
T Consensus 966 l~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 966 LEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred HHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 55555432 112111 22345677777888888888888888888888876544
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0001 Score=76.45 Aligned_cols=307 Identities=13% Similarity=0.007 Sum_probs=160.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhc-----CC----------CCHH
Q 003557 30 LGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAG-LFMESGDLNRALQYYKEAVKL-----KP----------TFPD 93 (811)
Q Consensus 30 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~-----~p----------~~~~ 93 (811)
.+...+..++++..++.++..-.++..+....++.+. .|++.|.... ...++....+ .| +...
T Consensus 23 ~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~~~~~gld~~~~t~ 101 (696)
T KOG2471|consen 23 QAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH-SVLLKELEALTADADAPGDVSSGLSLKQGTV 101 (696)
T ss_pred HHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh-HHHHHHHHHHHHhhccccchhcchhhhcchH
Confidence 3444455677888888877777766655444444444 3444443322 1222222111 11 1223
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------hhHHHhHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHH
Q 003557 94 AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN------AIAFGNLASTYYERGQADMAILYYKQAIGC---DPRFLEAYNN 164 (811)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 164 (811)
.+++.|.+|+...++..|++........-.. ...-...-..+....+.++|+.++.-.-++ .......-..
T Consensus 102 ~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~ 181 (696)
T KOG2471|consen 102 MDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHI 181 (696)
T ss_pred HhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 5667777777777777777766655543211 122223334455555666666554332211 0000000000
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHH
Q 003557 165 LGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 244 (811)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~ 244 (811)
-+....+.+....|..-+.- .+++ ..+.......|....+...+..-.+.+.....+.+......+..++..|++.
T Consensus 182 ~~nn~~kt~s~~aAe~s~~~---a~~k-~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~ 257 (696)
T KOG2471|consen 182 PANNLLKTLSPSAAERSFST---ADLK-LELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHP 257 (696)
T ss_pred chhhhcccCCcchhcccchh---hccc-hhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchH
Confidence 01111111122222111110 0111 1233333444555555555555555555555556666666666666666666
Q ss_pred HHHHHHHHH-HhcCCC--------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---------C---------CCcHHH
Q 003557 245 DAISCYNEV-LRIDPL--------AADGLVNRGNTYKEIGRVTDAIQDYIRAITI---------R---------PTMAEA 297 (811)
Q Consensus 245 ~A~~~~~~a-l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~---------p~~~~~ 297 (811)
+|.+.+... +...+. .-..|+++|.++++.|.|.-+..+|.++++. . ....++
T Consensus 258 kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~ei 337 (696)
T KOG2471|consen 258 KAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEI 337 (696)
T ss_pred HHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhh
Confidence 666665443 111121 1124566666666666666666666666641 1 123568
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhhh
Q 003557 298 HANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQC 341 (811)
Q Consensus 298 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 341 (811)
.++.|..|...|+.-.|.++|.++....-.+|..|..++.+...
T Consensus 338 lYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 338 LYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888876554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00056 Score=72.04 Aligned_cols=146 Identities=22% Similarity=0.113 Sum_probs=84.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHH
Q 003557 31 GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQE 110 (811)
Q Consensus 31 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 110 (811)
.....+..+.++-++..+++++++|+.+.+|..|+.- ......+|+++|+++++..... +.........|..-+
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~----lg~s~~~~~~g~~~e 248 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS----LGKSQFLQHHGHFWE 248 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh----hchhhhhhcccchhh
Confidence 3344456677777777777777777777777766642 2334667777777776653221 111111111111111
Q ss_pred HHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003557 111 AIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPR--FLEAYNNLGNALKDVGRVDEAIQCYNQCL 186 (811)
Q Consensus 111 A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al 186 (811)
.. .....++-..+...++.+..+.|+.++|++.++.+++..|. +..+..++..++...+.|.++..++.+--
T Consensus 249 ~~----~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 249 AW----HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hh----hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 10 00011222445566777777777777787777777766554 44567777777777777777777777643
|
The molecular function of this protein is uncertain. |
| >TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.7e-05 Score=76.35 Aligned_cols=231 Identities=13% Similarity=0.047 Sum_probs=118.1
Q ss_pred hcccCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCC-----HHHHHHHHHhCCCeEEEeCCCCCCCcchhhhhc
Q 003557 448 FGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS-----SDMIAKLINEDKIQILINLNGYTKGARNEIFAM 522 (811)
Q Consensus 448 ~~~~d~~~~ev~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~dilv~~~~~~~~~~~~~~~~ 522 (811)
.+.+....++|++++.... ..+.+.++..+..++.++..+ ..++.+.|++.++|++|--.-.+...-...+.
T Consensus 24 A~~l~~~g~~v~f~~~~~~--~~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D~y~~~~~~~~~~k- 100 (279)
T TIGR03590 24 ARALHAQGAEVAFACKPLP--GDLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEKFDILIVDHYGLDADWEKLIK- 100 (279)
T ss_pred HHHHHHCCCEEEEEeCCCC--HHHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHH-
Confidence 3344334678888876532 234567888877777666433 34688999999999987444322221112221
Q ss_pred CCCceEEeccccCCCCCCCcccEEEecCccCCcCCCCCCcc-----ceEEcCCccccCCCccccccCCCCCCCCCcCCCC
Q 003557 523 QPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSE-----KLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYG 597 (811)
Q Consensus 523 r~Apvq~~~~g~~~t~g~~~~d~~~~d~~~~p~~~~~~~~e-----~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~g 597 (811)
...|.-+ .+.-.+..+. ..|++|-.... ... ..|.+ +...+-..|.+.... +.........|.
T Consensus 101 ~~~~~l~-~iDD~~~~~~-~~D~vin~~~~-~~~--~~y~~~~~~~~~~l~G~~Y~~lr~e----F~~~~~~~~~~~--- 168 (279)
T TIGR03590 101 EFGRKIL-VIDDLADRPH-DCDLLLDQNLG-ADA--SDYQGLVPANCRLLLGPSYALLREE----FYQLATANKRRK--- 168 (279)
T ss_pred HhCCeEE-EEecCCCCCc-CCCEEEeCCCC-cCH--hHhcccCcCCCeEEecchHHhhhHH----HHHhhHhhhccc---
Confidence 1233222 2222221112 56777654332 111 11211 111111112211100 000000011111
Q ss_pred CCCCcEEEEecCC--CCCCCHHHHHHHHHHHhhcCCe-EEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHH
Q 003557 598 LPEDKFIFACFNQ--LYKMDPEIFNTWCNILRRVPNS-ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIR 674 (811)
Q Consensus 598 l~~~~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~-~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 674 (811)
+...|+.+++- ..+++..++++..++. ++. ..+++|.+....+++++..+.. .+|.+.+.. .+...
T Consensus 169 --~~~~iLi~~GG~d~~~~~~~~l~~l~~~~---~~~~i~vv~G~~~~~~~~l~~~~~~~----~~i~~~~~~--~~m~~ 237 (279)
T TIGR03590 169 --PLRRVLVSFGGADPDNLTLKLLSALAESQ---INISITLVTGSSNPNLDELKKFAKEY----PNIILFIDV--ENMAE 237 (279)
T ss_pred --ccCeEEEEeCCcCCcCHHHHHHHHHhccc---cCceEEEEECCCCcCHHHHHHHHHhC----CCEEEEeCH--HHHHH
Confidence 11234445542 3456677777665432 222 3346676533356777766552 468887743 45556
Q ss_pred hcCCCcEEecCCCCCChhHHHHHHHhCCCccccc
Q 003557 675 RSSLADLFLDTPLCNAHTTGTDILWAGLPMITLP 708 (811)
Q Consensus 675 ~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~ 708 (811)
.+..+|+++. .||+|+.|++++|+|+|+.+
T Consensus 238 lm~~aDl~Is----~~G~T~~E~~a~g~P~i~i~ 267 (279)
T TIGR03590 238 LMNEADLAIG----AAGSTSWERCCLGLPSLAIC 267 (279)
T ss_pred HHHHCCEEEE----CCchHHHHHHHcCCCEEEEE
Confidence 6788999996 46799999999999999764
|
This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0026 Score=69.23 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003557 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE 49 (811)
Q Consensus 1 l~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 49 (811)
+..|+|+.|...++. ++..|+....|..++......|+.--|..+|..
T Consensus 455 id~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfaa 502 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFAA 502 (1636)
T ss_pred cccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 357899999887775 467788888899999888888888777777653
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00013 Score=61.97 Aligned_cols=92 Identities=26% Similarity=0.279 Sum_probs=53.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----hhHHHhHHHHHHH
Q 003557 63 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-----AIAFGNLASTYYE 137 (811)
Q Consensus 63 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~la~~~~~ 137 (811)
..|......|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+.-+++++++... ..++...|.+|..
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666666666666666666666666666666666655322 3455555666666
Q ss_pred cCCHHHHHHHHHHHHHc
Q 003557 138 RGQADMAILYYKQAIGC 154 (811)
Q Consensus 138 ~g~~~~A~~~~~~al~~ 154 (811)
.|+-+.|..-|+.+-++
T Consensus 128 ~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQL 144 (175)
T ss_pred hCchHHHHHhHHHHHHh
Confidence 66666666666555444
|
|
| >COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00013 Score=75.84 Aligned_cols=257 Identities=14% Similarity=0.094 Sum_probs=154.6
Q ss_pred HHHHHHHHHhCCCeEEEeCCCCCCCcchhhhhcCCCceEEec--------ccc-----CCCCCCCcccEEEecCccCCcC
Q 003557 490 SDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSY--------MGF-----PGTTGASYIDYLVTDEFVSPLR 556 (811)
Q Consensus 490 ~~~~~~~i~~~~~dilv~~~~~~~~~~~~~~~~r~Apvq~~~--------~g~-----~~t~g~~~~d~~~~d~~~~p~~ 556 (811)
...+.+.++..++|++|-+.+-.-.|.+.-..++-+|+.+.- -+| ..-.-+..+|.+++-.-.
T Consensus 112 ~~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~---- 187 (419)
T COG1519 112 PIAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILAQSEE---- 187 (419)
T ss_pred hHHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhcceeeecCHH----
Confidence 456888999999999998888777777777777888887631 111 111223556666652211
Q ss_pred CCCCCccceEEcCCccccCCCccccccCCCCCC----CCCcCCCCCCCCcEEEEecCCCCCCCHH-HHHHHHHHHhhcCC
Q 003557 557 YAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNC----QPKRSDYGLPEDKFIFACFNQLYKMDPE-IFNTWCNILRRVPN 631 (811)
Q Consensus 557 ~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~----~~~r~~~gl~~~~~~~~~~~~~~K~~~~-~~~~~~~il~~~p~ 631 (811)
..|+...|.-.-+...+.-+.--.+.|.. ...|..++.+ +.++.+.+. ...-++ .++++.+++++.||
T Consensus 188 ----D~~Rf~~LGa~~v~v~GNlKfd~~~~~~~~~~~~~~r~~l~~~--r~v~iaaST-H~GEeei~l~~~~~l~~~~~~ 260 (419)
T COG1519 188 ----DAQRFRSLGAKPVVVTGNLKFDIEPPPQLAAELAALRRQLGGH--RPVWVAAST-HEGEEEIILDAHQALKKQFPN 260 (419)
T ss_pred ----HHHHHHhcCCcceEEecceeecCCCChhhHHHHHHHHHhcCCC--CceEEEecC-CCchHHHHHHHHHHHHhhCCC
Confidence 12333333211111111111000000111 1267777776 344444443 555444 88999999999999
Q ss_pred eEEEeecCChhhHHHHHHHHHHcCCCCC------------ceEEcCCCChHHHHHhcCCCcEEec--CCCCCChhHHHHH
Q 003557 632 SALWLLRFPAAGEMRLRAYAVAQGVQPD------------QIIFTDVAMKQEHIRRSSLADLFLD--TPLCNAHTTGTDI 697 (811)
Q Consensus 632 ~~l~l~~~~~~~~~~l~~~~~~~gi~~~------------rv~~~~~~~~~~~~~~~~~~Dv~ld--~~~~~g~~t~~ea 697 (811)
..|+++--.|+--..+.+.+++.|+.-. .|.+.. ..-+...+|..+||+.= |+--.||--.+|+
T Consensus 261 ~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~D--tmGEL~l~y~~adiAFVGGSlv~~GGHN~LEp 338 (419)
T COG1519 261 LLLILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGD--TMGELGLLYGIADIAFVGGSLVPIGGHNPLEP 338 (419)
T ss_pred ceEEEecCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEe--cHhHHHHHHhhccEEEECCcccCCCCCChhhH
Confidence 9999887666645677788888876321 222222 23567778999999853 3433778889999
Q ss_pred HHhCCCcccccCCccccchhHHHHHhcCCCCccccCCHHHHHHHHHHHh-cCHHHHHHHHHHHHhhc
Q 003557 698 LWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLA-LDRQKLQALTNKLKSVR 763 (811)
Q Consensus 698 l~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~~~~~y~~~~~~l~-~d~~~~~~~~~~~~~~~ 763 (811)
.++|+|||+=+-....+-....++.+ |-- +.+++ ++.+..++.+. .|++.|.++++.....+
T Consensus 339 a~~~~pvi~Gp~~~Nf~ei~~~l~~~-ga~--~~v~~-~~~l~~~v~~l~~~~~~r~~~~~~~~~~v 401 (419)
T COG1519 339 AAFGTPVIFGPYTFNFSDIAERLLQA-GAG--LQVED-ADLLAKAVELLLADEDKREAYGRAGLEFL 401 (419)
T ss_pred HHcCCCEEeCCccccHHHHHHHHHhc-CCe--EEECC-HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999744333344444334433 321 55667 55555565555 56999999888765544
|
|
| >PF13524 Glyco_trans_1_2: Glycosyl transferases group 1 | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.6e-06 Score=69.86 Aligned_cols=90 Identities=11% Similarity=0.110 Sum_probs=67.4
Q ss_pred EEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 003557 681 LFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKL 759 (811)
Q Consensus 681 v~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~~~~~y~~~~~~l~~d~~~~~~~~~~~ 759 (811)
|+|.|...+| +..++|+|++|+|||+-....+. .++.. |..- +..+|++++++++..|.+||+.++.++++.
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~-----~~~~~-~~~~-~~~~~~~el~~~i~~ll~~~~~~~~ia~~a 73 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGLR-----EIFED-GEHI-ITYNDPEELAEKIEYLLENPEERRRIAKNA 73 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChHHHH-----HHcCC-CCeE-EEECCHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4567766677 88999999999999965421111 11111 4334 556799999999999999999999999999
Q ss_pred HhhcccCCCCChHHHHHHHH
Q 003557 760 KSVRLTCPLFDTARWVKNLE 779 (811)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~e 779 (811)
++.+.. .++.+..++++.
T Consensus 74 ~~~v~~--~~t~~~~~~~il 91 (92)
T PF13524_consen 74 RERVLK--RHTWEHRAEQIL 91 (92)
T ss_pred HHHHHH--hCCHHHHHHHHH
Confidence 998843 588888777664
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.7e-05 Score=79.99 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=49.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHhh
Q 003557 54 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDA---YLNLGNVYKALGMPQEAIMCYQRAVQT 121 (811)
Q Consensus 54 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 121 (811)
+|+++.+++++|.+|...|++++|+..|+++++++|++.++ |+++|.+|..+|++++|+..++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46667777777777777777777777777777777776643 777777777777777777777777765
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00073 Score=71.21 Aligned_cols=149 Identities=17% Similarity=0.166 Sum_probs=101.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCC
Q 003557 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQ 140 (811)
Q Consensus 61 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~ 140 (811)
-..+..-..+..+.+.-++.-++|++++|+.+++|..|+.- ......+|.++|+++++..... ..........|.
T Consensus 171 Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~---lg~s~~~~~~g~ 245 (539)
T PF04184_consen 171 AQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS---LGKSQFLQHHGH 245 (539)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh---hchhhhhhcccc
Confidence 34455566778889999999999999999999988887753 2334678888888887753220 000000011111
Q ss_pred HHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHcCChHHHHHHH
Q 003557 141 ADMAILYYKQAIGCDPR--FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS--HPQALTNLGNIYMEWNMLPAAASYY 216 (811)
Q Consensus 141 ~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~ 216 (811)
. -+....... ...+...+|.+..++|+.++|++.++.+++.+|. +..+..++..++...+.+.++..++
T Consensus 246 ~-------~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 246 F-------WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred h-------hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 1 111111111 1335677899999999999999999999988765 4468889999999999999999888
Q ss_pred HHHHh
Q 003557 217 KATLA 221 (811)
Q Consensus 217 ~~~l~ 221 (811)
.+.-+
T Consensus 319 ~kYdD 323 (539)
T PF04184_consen 319 AKYDD 323 (539)
T ss_pred HHhcc
Confidence 88643
|
The molecular function of this protein is uncertain. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0016 Score=61.51 Aligned_cols=175 Identities=17% Similarity=0.171 Sum_probs=90.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CC--CCHHHHHHHHHHHHHcCChHH
Q 003557 37 QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL----KP--TFPDAYLNLGNVYKALGMPQE 110 (811)
Q Consensus 37 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p--~~~~~~~~la~~~~~~g~~~~ 110 (811)
.+++++|.++|.++-. .|...++++.|=..|.++-+. +. +....|...+++|.+ ++.++
T Consensus 27 ~~k~eeAadl~~~Aan--------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~e 91 (288)
T KOG1586|consen 27 SNKYEEAAELYERAAN--------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEE 91 (288)
T ss_pred CcchHHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHH
Confidence 4577788777776643 222233333333333333222 10 112234444455443 47777
Q ss_pred HHHHHHHHHhhCCC-------hhHHHhHHHHHHHc-CCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHcCCHH
Q 003557 111 AIMCYQRAVQTRPN-------AIAFGNLASTYYER-GQADMAILYYKQAIGCDPR------FLEAYNNLGNALKDVGRVD 176 (811)
Q Consensus 111 A~~~~~~al~~~p~-------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~ 176 (811)
|..++++++++..+ ...+..++.+|... .++++|+.+|+++-+.... ....+...+..-...++|.
T Consensus 92 Av~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~ 171 (288)
T KOG1586|consen 92 AVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYS 171 (288)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 77777777765432 23344566666554 6677777777766543221 1224445555556667777
Q ss_pred HHHHHHHHHHhcCCCChH-------HHHHHHHHHHHcCChHHHHHHHHHHHhccCCC
Q 003557 177 EAIQCYNQCLSLQPSHPQ-------ALTNLGNIYMEWNMLPAAASYYKATLAVTTGL 226 (811)
Q Consensus 177 ~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 226 (811)
+|+..|++.....-++.- .+..-|.+++...+.-.+...+++..+.+|..
T Consensus 172 ~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 172 KAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 777777766655444332 22233344444444445555555555555543
|
|
| >COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00034 Score=73.83 Aligned_cols=247 Identities=15% Similarity=0.144 Sum_probs=137.6
Q ss_pred HHHHHHHHHhCCCeEEEeCCCCCCCcchhhhhcCCCceEEec----cccCCCCCCCcccEEEecCccCCcCCCCCCccce
Q 003557 490 SDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSY----MGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKL 565 (811)
Q Consensus 490 ~~~~~~~i~~~~~dilv~~~~~~~~~~~~~~~~r~Apvq~~~----~g~~~t~g~~~~d~~~~d~~~~p~~~~~~~~e~~ 565 (811)
..++.+.|++.++|++|-..|+-.+.-.-......-|+-+.- .|-.+-...+..+.+.+. +.. .......++.
T Consensus 80 ~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~ank~~~~~a~~V~~~-f~~--~~~~~~~~~~ 156 (357)
T COG0707 80 VLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGLANKILSKFAKKVASA-FPK--LEAGVKPENV 156 (357)
T ss_pred HHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcchhHHHhHHhhceeeec-ccc--ccccCCCCce
Confidence 356788999999999998777765432222222335765532 222111112333333321 111 0111111222
Q ss_pred EEcCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC---CCCCHHHHHHHHHHHhhcCCeEEEeecCChh
Q 003557 566 VHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL---YKMDPEIFNTWCNILRRVPNSALWLLRFPAA 642 (811)
Q Consensus 566 ~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~---~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~ 642 (811)
. +...+... ....-.....|..... +.+++..++-. .+++..+-+++..+.+ +..++...+ ..
T Consensus 157 ~------~tG~Pvr~--~~~~~~~~~~~~~~~~--~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~---~~~v~~~~G-~~ 222 (357)
T COG0707 157 V------VTGIPVRP--EFEELPAAEVRKDGRL--DKKTILVTGGSQGAKALNDLVPEALAKLAN---RIQVIHQTG-KN 222 (357)
T ss_pred E------EecCcccH--HhhccchhhhhhhccC--CCcEEEEECCcchhHHHHHHHHHHHHHhhh---CeEEEEEcC-cc
Confidence 1 11111111 1111000112222222 44444444422 3455555555444433 344443332 22
Q ss_pred hHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCcc---ccchhHH
Q 003557 643 GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM---ATRVAGS 719 (811)
Q Consensus 643 ~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~---~~r~~~~ 719 (811)
..+.+.....+.|+ +.+.+.. .+...+|+.+|+++ .-.|++|+.|.++.|+|+|..+=+.- .....+-
T Consensus 223 ~~~~~~~~~~~~~~----~~v~~f~--~dm~~~~~~ADLvI---sRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~ 293 (357)
T COG0707 223 DLEELKSAYNELGV----VRVLPFI--DDMAALLAAADLVI---SRAGALTIAELLALGVPAILVPYPPGADGHQEYNAK 293 (357)
T ss_pred hHHHHHHHHhhcCc----EEEeeHH--hhHHHHHHhccEEE---eCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHH
Confidence 25667777777776 5566633 34556688999997 45789999999999999998875544 3444667
Q ss_pred HHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 003557 720 LCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQALTNKLKSVR 763 (811)
Q Consensus 720 ~l~~~g~~~~~v~~---~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~ 763 (811)
.|...|..- ++.+ +++.+++...++.++++.+++|+++.++..
T Consensus 294 ~l~~~gaa~-~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~ 339 (357)
T COG0707 294 FLEKAGAAL-VIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLG 339 (357)
T ss_pred HHHhCCCEE-EeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 788888865 4432 467999999999999999999999988764
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00065 Score=64.50 Aligned_cols=145 Identities=18% Similarity=0.156 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHH
Q 003557 6 LNEAAQCCRQALALN-PL---LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF------AIAWSNLAGLFMESGDLN 75 (811)
Q Consensus 6 ~~~A~~~~~~~l~~~-p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~ 75 (811)
..+|.+...+..... |+ -+..|..-+.+|...+++++|..++.++.+-..++ +.++-..+.+......+.
T Consensus 9 i~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kls 88 (308)
T KOG1585|consen 9 ISEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLS 88 (308)
T ss_pred HHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhH
Confidence 445555555544422 22 23456666777788888888888888888654443 334445555555666777
Q ss_pred HHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------hhHHHhHHHHHHHcCCHHH
Q 003557 76 RALQYYKEAVKLK-----PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-------AIAFGNLASTYYERGQADM 143 (811)
Q Consensus 76 ~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~la~~~~~~g~~~~ 143 (811)
++..+++++.... |+....-...+--....-+.++|+.+|++++..-.+ .+.+...+.++.+..++++
T Consensus 89 Evvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 89 EVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 7777777765441 222111222222223344455555555555443110 2333444444555555555
Q ss_pred HHHHHHH
Q 003557 144 AILYYKQ 150 (811)
Q Consensus 144 A~~~~~~ 150 (811)
|-..+.+
T Consensus 169 aa~a~lK 175 (308)
T KOG1585|consen 169 AATAFLK 175 (308)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00054 Score=67.96 Aligned_cols=161 Identities=12% Similarity=0.017 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCH---HHHHHHHHH
Q 003557 26 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL-KPTFP---DAYLNLGNV 101 (811)
Q Consensus 26 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~---~~~~~la~~ 101 (811)
-....+.++...|++.+|-..+++.++..|.+..++..--.+++.+|+...-...+++.+-. +++.| .+.-.++..
T Consensus 105 k~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 105 KRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG 184 (491)
T ss_pred hhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence 34445556677888888888888888888888877777777888888888888888888776 65553 344566677
Q ss_pred HHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHcCCHH
Q 003557 102 YKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPR----FLEAYNNLGNALKDVGRVD 176 (811)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~ 176 (811)
+...|-|++|.+..++++++++. ..+...++.++...++..++.+...+--..-.. ....|...+.++...+.|+
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye 264 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYE 264 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchh
Confidence 78888888888888888888887 777888888888888888888877664322111 1123556677788888888
Q ss_pred HHHHHHHHHH
Q 003557 177 EAIQCYNQCL 186 (811)
Q Consensus 177 ~A~~~~~~al 186 (811)
.|+++|..-+
T Consensus 265 ~aleIyD~ei 274 (491)
T KOG2610|consen 265 KALEIYDREI 274 (491)
T ss_pred HHHHHHHHHH
Confidence 8888887654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.5e-06 Score=66.91 Aligned_cols=64 Identities=33% Similarity=0.550 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----C---CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 003557 261 ADGLVNRGNTYKEIGRVTDAIQDYIRAITI----R---PTMAEAHANLASAYKDSGHVEAAIKSYKQALLL 324 (811)
Q Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 324 (811)
..++.++|.+|..+|++++|+.+|++++++ . |....++.++|.++...|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345666666666666666666666666644 1 112446677777777777777777777777654
|
... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.6e-05 Score=70.02 Aligned_cols=93 Identities=26% Similarity=0.342 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCC--
Q 003557 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIG----------RVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGH-- 310 (811)
Q Consensus 243 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 310 (811)
++.|.+.++.....+|.+++.+++-|.++..+. -+++|+.-|++++.++|+..++++.+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 455666666666666666666666666555442 34566777777777888888888888887766543
Q ss_pred ---------HHHHHHHHHHHHhcCCCChHHHHHH
Q 003557 311 ---------VEAAIKSYKQALLLRPDFPEATCNL 335 (811)
Q Consensus 311 ---------~~~A~~~~~~al~~~p~~~~~~~~l 335 (811)
+++|.++|+++...+|++......|
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 7889999999999999987654433
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00056 Score=67.81 Aligned_cols=158 Identities=14% Similarity=0.070 Sum_probs=119.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhc-cCCC---chHHHHHHHHHHHcC
Q 003557 166 GNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV-TTGL---SAPFNNLAVIYKQQG 241 (811)
Q Consensus 166 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~---~~~~~~la~~~~~~g 241 (811)
+.++...|++.+|....++.++..|.+.-++..--.+++.+|+...-...+++.+-. +++. ....-.++..+.+.|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 445566788888888888888888888777777777788888888888888887765 5444 334455677788888
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHhCCCHHHHHHH
Q 003557 242 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM----AEAHANLASAYKDSGHVEAAIKS 317 (811)
Q Consensus 242 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~ 317 (811)
-|++|.+.-++++++++.+.-+...++.++...|++.++.+...+.-..-... ..-|...+.++.+.+.++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 89999999999999998888888888888888899988888877654332211 22456678888888999999999
Q ss_pred HHHHHh
Q 003557 318 YKQALL 323 (811)
Q Consensus 318 ~~~al~ 323 (811)
|.+-+-
T Consensus 270 yD~ei~ 275 (491)
T KOG2610|consen 270 YDREIW 275 (491)
T ss_pred HHHHHH
Confidence 986553
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00027 Score=74.88 Aligned_cols=103 Identities=28% Similarity=0.390 Sum_probs=89.6
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHH
Q 003557 238 KQQGNYADAISCYNEVLRIDPLAAD-GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 316 (811)
Q Consensus 238 ~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 316 (811)
...|+...|..++..++...|.... .+.+++++..+.|-.-+|-..+.+++.+....+-.++.+|.+|..+.+.+.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 3568889999999999988886543 678899999999999999999999999988888899999999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHhh
Q 003557 317 SYKQALLLRPDFPEATCNLLHTLQ 340 (811)
Q Consensus 317 ~~~~al~~~p~~~~~~~~l~~~~~ 340 (811)
.|+++++++|+++..-..|....+
T Consensus 698 ~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999988766655443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.022 Score=61.91 Aligned_cols=311 Identities=14% Similarity=0.077 Sum_probs=215.1
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCChHHHHHHHHHH
Q 003557 40 VQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVY-KALGMPQEAIMCYQRA 118 (811)
Q Consensus 40 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~a 118 (811)
.+.+...|...+...|.....|...|..-.+.|..+.+.+.|++++..-|-....|..+-... ...|+.+.-...|+++
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 466777788888889999999999999999999999999999999999998888776554443 4557777788889999
Q ss_pred HhhCCC----hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhc
Q 003557 119 VQTRPN----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV------GRVDEAIQCYNQCLSL 188 (811)
Q Consensus 119 l~~~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~ 188 (811)
...... ...|-.....-..++++..-...|++.++.--.....++..-.-+.+. -..+++...-......
T Consensus 141 ~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~ 220 (577)
T KOG1258|consen 141 KSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAER 220 (577)
T ss_pred HHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhh
Confidence 887543 456666666667788888888888888865333222222211111111 1222222222111110
Q ss_pred ---------------------CCC--ChHHHHHHH-------HHHHHcCChHHHHHHHHHHHhcc-----CC---CchHH
Q 003557 189 ---------------------QPS--HPQALTNLG-------NIYMEWNMLPAAASYYKATLAVT-----TG---LSAPF 230 (811)
Q Consensus 189 ---------------------~p~--~~~~~~~la-------~~~~~~g~~~~A~~~~~~~l~~~-----~~---~~~~~ 230 (811)
.|. .......+. .++.......+....++..+... |. ....|
T Consensus 221 ~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw 300 (577)
T KOG1258|consen 221 SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNW 300 (577)
T ss_pred hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHH
Confidence 000 001111111 12222223333334444444321 21 22346
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHhCC
Q 003557 231 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR-PTMAEAHANLASAYKDSG 309 (811)
Q Consensus 231 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g 309 (811)
......-...|+++...-.|++++--.....+.|...+......|+.+-|...+..+.+.. |+.+.+...-+..-...|
T Consensus 301 ~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~ 380 (577)
T KOG1258|consen 301 RYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNG 380 (577)
T ss_pred HHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhc
Confidence 6666777789999999999999988878888999999999999999999999998888874 667778888888888899
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCChhhHhH
Q 003557 310 HVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDR 350 (811)
Q Consensus 310 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 350 (811)
++..|...+++..+..|+...+....+......|+.+.+..
T Consensus 381 n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 381 NFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred cHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 99999999999999889988888888888888888777664
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0026 Score=71.78 Aligned_cols=265 Identities=14% Similarity=0.157 Sum_probs=175.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 003557 22 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 101 (811)
Q Consensus 22 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 101 (811)
+.+..|..+|.+..+.|...+|++.|-++ +++..|........+.|+|++-+.++..+-+...+ +.+-..+..+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~A 1175 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFA 1175 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHH
Confidence 45789999999999999999999999765 56778899999999999999999999888765432 3445566677
Q ss_pred HHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 003557 102 YKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 181 (811)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 181 (811)
|.+.++..+-.++. ..|+..-.-..|.-++..+.|+.|.-+|.. ...|..++..+..+|+|+.|.+.
T Consensus 1176 yAkt~rl~elE~fi-----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-----AGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHhchHHHHHHHh-----cCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 88888877765543 356766666788889999999988877764 34577888999999999999988
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 003557 182 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAA 261 (811)
Q Consensus 182 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 261 (811)
-+++ ++..+|......+...+.+.-|.-+=-.. --.++-+-.+...|...|-+++-+.+++.++-+...+-
T Consensus 1243 aRKA-----ns~ktWK~VcfaCvd~~EFrlAQiCGL~i----ivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM 1313 (1666)
T KOG0985|consen 1243 ARKA-----NSTKTWKEVCFACVDKEEFRLAQICGLNI----IVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHM 1313 (1666)
T ss_pred hhhc-----cchhHHHHHHHHHhchhhhhHHHhcCceE----EEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHH
Confidence 8776 34556666666666555554433211000 01122344566667777777777777777766655445
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHhCCCHHHHH
Q 003557 262 DGLVNRGNTYKEIGRVTDAIQDYIRAITI--------RPTMAEAHANLASAYKDSGHVEAAI 315 (811)
Q Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~ 315 (811)
-.+..+|.+|.+- ++++-.+.++-.... .-+....|..+..+|.+-..|+.|.
T Consensus 1314 gmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1314 GMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 5555566555543 334433333322211 0112335555666666555555543
|
|
| >TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00031 Score=75.33 Aligned_cols=286 Identities=11% Similarity=0.018 Sum_probs=145.7
Q ss_pred HhhHHHHhcccCC-CCeEEEEEecCCCCChHH---HHHHHhc-c----CceEECCC---CC--------HHHHHHHHHhC
Q 003557 441 SHLMGSVFGMHNK-ENVEVFCYALSPNDGTEW---RQRTQSE-A----EHFVDVSA---MS--------SDMIAKLINED 500 (811)
Q Consensus 441 ~~~l~~l~~~~d~-~~~ev~~y~~~~~~~~~~---~~~~~~~-~----~~~~~~~~---~~--------~~~~~~~i~~~ 500 (811)
.-.+.++++.+.+ ..||+.+..++...+..+ ...+... . +....+.. -+ ...+.+.+++.
T Consensus 13 ~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (365)
T TIGR03568 13 YGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIEILLDSDSNAGMAKSMGLTIIGFSDAFERL 92 (365)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHHcCCCCCCccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 3456777777765 369999988887654332 2333332 2 12222322 11 14578889999
Q ss_pred CCeEEEeCCCCCCCcch-----hhhh-cCCCceEEeccccCCCCCC-CcccEE----EecCccCCcCCCC-CC------c
Q 003557 501 KIQILINLNGYTKGARN-----EIFA-MQPAPIQVSYMGFPGTTGA-SYIDYL----VTDEFVSPLRYAH-IY------S 562 (811)
Q Consensus 501 ~~dilv~~~~~~~~~~~-----~~~~-~r~Apvq~~~~g~~~t~g~-~~~d~~----~~d~~~~p~~~~~-~~------~ 562 (811)
++|+++ .+|.+. .+.+ ..--||--..-|- -|.|. ..+... +++-.++|.+... .. .
T Consensus 93 ~Pd~vl-----v~GD~~~~la~alaA~~~~IPv~HveaG~-rs~~~~eE~~r~~i~~la~l~f~~t~~~~~~L~~eg~~~ 166 (365)
T TIGR03568 93 KPDLVV-----VLGDRFEMLAAAIAAALLNIPIAHIHGGE-VTEGAIDESIRHAITKLSHLHFVATEEYRQRVIQMGEDP 166 (365)
T ss_pred CCCEEE-----EeCCchHHHHHHHHHHHhCCcEEEEECCc-cCCCCchHHHHHHHHHHHhhccCCCHHHHHHHHHcCCCC
Confidence 999984 444442 1121 2224765333231 11121 112122 3344455544321 11 2
Q ss_pred cceEEcCCccccCCCccccccCCCCCCCCCcCCCCCCC-CcEEEEecCCCC--CCC--HHHHHHHHHHHhhcCCeEEEee
Q 003557 563 EKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPE-DKFIFACFNQLY--KMD--PEIFNTWCNILRRVPNSALWLL 637 (811)
Q Consensus 563 e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~-~~~~~~~~~~~~--K~~--~~~~~~~~~il~~~p~~~l~l~ 637 (811)
++++...+..+..- ............+++|++. +.+++..+.+.. |.. +.+-++...+.+...+..++.-
T Consensus 167 ~~i~~tG~~~iD~l-----~~~~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P 241 (365)
T TIGR03568 167 DRVFNVGSPGLDNI-----LSLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYP 241 (365)
T ss_pred CcEEEECCcHHHHH-----HhhhccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEe
Confidence 23332222111100 0000011133567788874 356666776543 333 2333333333322223333222
Q ss_pred cCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchh
Q 003557 638 RFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 717 (811)
Q Consensus 638 ~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~ 717 (811)
..++. ...+.+.+.+..-..++|.+.+..++.+++.++..+|+++ .+++..+-||..+|+|||++. +...+|..
T Consensus 242 ~~~p~-~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~vi----tdSSggi~EA~~lg~Pvv~l~-~R~e~~~~ 315 (365)
T TIGR03568 242 NADAG-SRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVI----GNSSSGIIEAPSFGVPTINIG-TRQKGRLR 315 (365)
T ss_pred CCCCC-chHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCEEE----EcChhHHHhhhhcCCCEEeec-CCchhhhh
Confidence 22232 3333333333321136799999999999999999999998 333344589999999999885 33344432
Q ss_pred HHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHH
Q 003557 718 GSLCLATGLGEEMIVNSMKEYEERAVSLALDRQK 751 (811)
Q Consensus 718 ~~~l~~~g~~~~~v~~~~~~y~~~~~~l~~d~~~ 751 (811)
|-.-.+|..++++.++.+.+ +.+++.
T Consensus 316 -------g~nvl~vg~~~~~I~~a~~~-~~~~~~ 341 (365)
T TIGR03568 316 -------ADSVIDVDPDKEEIVKAIEK-LLDPAF 341 (365)
T ss_pred -------cCeEEEeCCCHHHHHHHHHH-HhChHH
Confidence 33320255588998887777 456543
|
This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.015 Score=60.28 Aligned_cols=342 Identities=13% Similarity=0.072 Sum_probs=194.7
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003557 12 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 91 (811)
Q Consensus 12 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 91 (811)
.++.-++.+|.+...|+.+...+..+|.+++-.+.|++...-.|-.+.+|......-+..+++.....+|.+++...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 4556678899999999999999999999999999999999888877777776666556667777777777777664322
Q ss_pred HHHHHHHHHHHHHcCChH--HH----HHHHHHHHh---hCCC-hhHHHhHHHHHH---------HcCCHHHHHHHHHHHH
Q 003557 92 PDAYLNLGNVYKALGMPQ--EA----IMCYQRAVQ---TRPN-AIAFGNLASTYY---------ERGQADMAILYYKQAI 152 (811)
Q Consensus 92 ~~~~~~la~~~~~~g~~~--~A----~~~~~~al~---~~p~-~~~~~~la~~~~---------~~g~~~~A~~~~~~al 152 (811)
.+.|......-.+.+..- ++ .+.|+-.+. .+|. ...|...+..+. ++.+.+.-...|.+++
T Consensus 109 ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral 188 (660)
T COG5107 109 LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRAL 188 (660)
T ss_pred HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 233332222222221110 11 111221111 1222 222222222211 1112222333333333
Q ss_pred HcC-------------------------------------------------------CCcHHH-----------HHHHH
Q 003557 153 GCD-------------------------------------------------------PRFLEA-----------YNNLG 166 (811)
Q Consensus 153 ~~~-------------------------------------------------------p~~~~~-----------~~~la 166 (811)
... |-+... |.+..
T Consensus 189 ~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwI 268 (660)
T COG5107 189 QTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWI 268 (660)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHh
Confidence 221 111110 11111
Q ss_pred HHHHHc-----CC-HH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Q 003557 167 NALKDV-----GR-VD-EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 239 (811)
Q Consensus 167 ~~~~~~-----g~-~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 239 (811)
..-... |+ .. .---.+++++...+-.++.|+.....+...++-+.|+...++.+...|. ....++..|..
T Consensus 269 kwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel 345 (660)
T COG5107 269 KWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYEL 345 (660)
T ss_pred hHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhh
Confidence 111100 11 11 1112344555555556667777777777777888888777777666555 55666777766
Q ss_pred cCCHHHHHHHHHHHHhc------------------CCC-CHH-----------HHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003557 240 QGNYADAISCYNEVLRI------------------DPL-AAD-----------GLVNRGNTYKEIGRVTDAIQDYIRAIT 289 (811)
Q Consensus 240 ~g~~~~A~~~~~~al~~------------------~p~-~~~-----------~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (811)
.++-++-..+|+++.+. +++ ..+ ++......-.+..-.+.|...|-++-+
T Consensus 346 ~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk 425 (660)
T COG5107 346 VNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRK 425 (660)
T ss_pred cccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 66666666656554321 111 111 111222222344456777788887766
Q ss_pred cCCCcHHHHHHHHH-HHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHH
Q 003557 290 IRPTMAEAHANLAS-AYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEG 357 (811)
Q Consensus 290 ~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~ 357 (811)
..-....++..-|. -|...|++..|..+|+--+...|+.+......+..+...++-..|..+|+.+..
T Consensus 426 ~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 426 EGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred cCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 54222333333332 245579999999999999999999998888888888899999999999985443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00074 Score=64.15 Aligned_cols=187 Identities=14% Similarity=0.149 Sum_probs=123.4
Q ss_pred hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHH
Q 003557 125 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL------EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTN 198 (811)
Q Consensus 125 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 198 (811)
...|..-+..|...+++++|...+.++.+...++. .++-..+.+......+.++..+++++.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs------------ 98 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS------------ 98 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------------
Confidence 55666777777778888888888888775433332 233344444445555555555555543
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHH
Q 003557 199 LGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA------ADGLVNRGNTYK 272 (811)
Q Consensus 199 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~ 272 (811)
..|.+.|..+.|-..++++-+. .+..+.++|+++|++++..-..+ .+.+...++++.
T Consensus 99 --~lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 99 --ELYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred --HHHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 3566666666666666655432 34567888888888887664322 345667788889
Q ss_pred HhCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCCChHHHHHHHHHhh
Q 003557 273 EIGRVTDAIQDYIRAITI------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL----RPDFPEATCNLLHTLQ 340 (811)
Q Consensus 273 ~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~ 340 (811)
+..++.+|-..+.+-... .++....+.....+|....+|..|..+++...+. .|++..+..+|+..+-
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd 239 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD 239 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc
Confidence 999999988887765433 3444556777777788888999999999997776 3445556666665554
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.97 E-value=7.6e-05 Score=67.96 Aligned_cols=67 Identities=27% Similarity=0.307 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 003557 6 LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGL----------VQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG 72 (811)
Q Consensus 6 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 72 (811)
|+.|.+.++.....+|.+++.++.-|.++..+.+ +++|+.-|++++.++|+...++..+|.+|...+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 6778888888888899999988888888776533 455666677777777777777777777776544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13528 Glyco_trans_1_3: Glycosyl transferase family 1 | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00022 Score=75.56 Aligned_cols=106 Identities=19% Similarity=0.196 Sum_probs=72.3
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCc
Q 003557 601 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 680 (811)
Q Consensus 601 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~D 680 (811)
+..++.+++..... ++ .+++++.|+..++++|.+.. .. - .++|.+.+.. ..++...+..||
T Consensus 192 ~~~iLv~~gg~~~~-----~~-~~~l~~~~~~~~~v~g~~~~-~~----------~-~~ni~~~~~~-~~~~~~~m~~ad 252 (318)
T PF13528_consen 192 EPKILVYFGGGGPG-----DL-IEALKALPDYQFIVFGPNAA-DP----------R-PGNIHVRPFS-TPDFAELMAAAD 252 (318)
T ss_pred CCEEEEEeCCCcHH-----HH-HHHHHhCCCCeEEEEcCCcc-cc----------c-CCCEEEeecC-hHHHHHHHHhCC
Confidence 44677777754332 33 35677789878877765421 11 1 5778888743 245555568899
Q ss_pred EEecCCCCCChhHHHHHHHhCCCcccccCCc-cccchhHHHHHhcCCCC
Q 003557 681 LFLDTPLCNAHTTGTDILWAGLPMITLPLEK-MATRVAGSLCLATGLGE 728 (811)
Q Consensus 681 v~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~-~~~r~~~~~l~~~g~~~ 728 (811)
+++. -+|.+|++||+++|+|+|+.+-.. .....-+..|..+|+..
T Consensus 253 ~vIs---~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~ 298 (318)
T PF13528_consen 253 LVIS---KGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGI 298 (318)
T ss_pred EEEE---CCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeE
Confidence 9983 367888999999999999988654 34555578888888876
|
|
| >COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00024 Score=73.05 Aligned_cols=164 Identities=20% Similarity=0.237 Sum_probs=102.2
Q ss_pred CCCCCCcCCCCCCCCcEEEEecC--CC---CCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCce
Q 003557 587 PNCQPKRSDYGLPEDKFIFACFN--QL---YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQI 661 (811)
Q Consensus 587 ~~~~~~r~~~gl~~~~~~~~~~~--~~---~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv 661 (811)
+++...|+++|++.+.-+++.+= |. .++.|-++++..++.++.|+.++++--.++. ..++...+.......-.+
T Consensus 173 ~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~-~~~~~~~~~~~~~~~~~~ 251 (381)
T COG0763 173 PDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAK-YRRIIEEALKWEVAGLSL 251 (381)
T ss_pred ccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHH-HHHHHHHHhhccccCceE
Confidence 34455899999998877766542 32 3778899999888888999999998765544 445555554433321223
Q ss_pred EEcCCCChHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCccccc-CCccccchhHHH--HHhcCCCCccccC-----
Q 003557 662 IFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLP-LEKMATRVAGSL--CLATGLGEEMIVN----- 733 (811)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~-g~~~~~r~~~~~--l~~~g~~~~~v~~----- 733 (811)
++.+ .+-...+..||+.| --+||.++|++.+|+|.|... -..+-..++--+ +..+++|. ++++
T Consensus 252 ~~~~----~~~~~a~~~aD~al----~aSGT~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpN-Ii~~~~ivP 322 (381)
T COG0763 252 ILID----GEKRKAFAAADAAL----AASGTATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPN-ILAGREIVP 322 (381)
T ss_pred EecC----chHHHHHHHhhHHH----HhccHHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchH-HhcCCccch
Confidence 3333 22333456789987 445899999999999977533 211111111110 11235555 4443
Q ss_pred -------CHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 003557 734 -------SMKEYEERAVSLALDRQKLQALTNKLK 760 (811)
Q Consensus 734 -------~~~~y~~~~~~l~~d~~~~~~~~~~~~ 760 (811)
+++...+....|..|...+.++.+..+
T Consensus 323 Eliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~ 356 (381)
T COG0763 323 ELIQEDCTPENLARALEELLLNGDRREALKEKFR 356 (381)
T ss_pred HHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHH
Confidence 577777788888888866666665443
|
|
| >PRK09814 beta-1,6-galactofuranosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.9e-05 Score=80.80 Aligned_cols=132 Identities=16% Similarity=0.095 Sum_probs=89.9
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEE
Q 003557 603 FIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLF 682 (811)
Q Consensus 603 ~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ 682 (811)
++++.++++.|.. . +....|+.+|.++|.|+. +. +. .++|+|.|+.+.++....|+. |+.
T Consensus 170 ~~i~yaG~l~k~~-~-------l~~~~~~~~l~i~G~g~~-~~---------~~-~~~V~f~G~~~~eel~~~l~~-~~g 229 (333)
T PRK09814 170 KKINFAGNLEKSP-F-------LKNWSQGIKLTVFGPNPE-DL---------EN-SANISYKGWFDPEELPNELSK-GFG 229 (333)
T ss_pred ceEEEecChhhch-H-------HHhcCCCCeEEEECCCcc-cc---------cc-CCCeEEecCCCHHHHHHHHhc-CcC
Confidence 4566667666542 1 111357889999998875 22 23 478999999999988877776 544
Q ss_pred ecCC------------CCCChhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHH
Q 003557 683 LDTP------------LCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQ 750 (811)
Q Consensus 683 ld~~------------~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~~~~~y~~~~~~l~~d~~ 750 (811)
|-+. .++.+.-+.++|++|+|||+......+ .++.. +-.+ +++++.++..+.+.++ +++
T Consensus 230 Lv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~-----~~V~~-~~~G-~~v~~~~el~~~l~~~--~~~ 300 (333)
T PRK09814 230 LVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIA-----DFIVE-NGLG-FVVDSLEELPEIIDNI--TEE 300 (333)
T ss_pred eEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHH-----HHHHh-CCce-EEeCCHHHHHHHHHhc--CHH
Confidence 3221 456678899999999999976543332 33444 3334 5667889988888876 567
Q ss_pred HHHHHHHHHHhhc
Q 003557 751 KLQALTNKLKSVR 763 (811)
Q Consensus 751 ~~~~~~~~~~~~~ 763 (811)
.+.+|+++.++..
T Consensus 301 ~~~~m~~n~~~~~ 313 (333)
T PRK09814 301 EYQEMVENVKKIS 313 (333)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888887653
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00028 Score=72.57 Aligned_cols=136 Identities=15% Similarity=0.068 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 003557 195 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ-QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE 273 (811)
Q Consensus 195 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 273 (811)
+|..+.....+.+..+.|..+|+++.+..+....+|...|.+... .++.+.|.++|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455556666666667777777777775555566677777777555 4555558888888888888888888877788888
Q ss_pred hCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChH
Q 003557 274 IGRVTDAIQDYIRAITIRPTMA---EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 330 (811)
Q Consensus 274 ~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 330 (811)
.++.+.|..+|++++..-+... .+|......-.+.|+.+...++.+++.+..|+...
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 8888888888888887655544 57777788888888888888888888888877443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.91 E-value=1e-05 Score=65.37 Aligned_cols=63 Identities=33% Similarity=0.632 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 003557 228 APFNNLAVIYKQQGNYADAISCYNEVLRI----DP---LAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 290 (811)
Q Consensus 228 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (811)
.++.++|.+|..+|++++|+.+|+++++. .+ ....++.++|.++...|++++|++++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45566666666667777777776666644 11 12446777778888888888888887777754
|
... |
| >PLN02670 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00028 Score=77.44 Aligned_cols=175 Identities=13% Similarity=0.115 Sum_probs=107.8
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCChhh-H---HHHHHHHHHcCCCCCceEEcCCCChHHHHHhc
Q 003557 601 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG-E---MRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS 676 (811)
Q Consensus 601 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~-~---~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 676 (811)
..|||.||+....+++.-++..+.-+.+.|...||.+..++.. . ..+-+-+.++ +...-+++.++.|..+.|.-
T Consensus 278 ~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~-~~~rG~vv~~W~PQ~~IL~H- 355 (472)
T PLN02670 278 NSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEER-VKGRGMIHVGWVPQVKILSH- 355 (472)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHh-ccCCCeEEeCcCCHHHHhcC-
Confidence 5699999999999999999999999999999999988642111 1 1121222221 11112677899998888743
Q ss_pred CCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCcccc-------CCHHHHHHHHHHHhcCH
Q 003557 677 SLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV-------NSMKEYEERAVSLALDR 749 (811)
Q Consensus 677 ~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~-------~~~~~y~~~~~~l~~d~ 749 (811)
..+..|| ...|-+|++||+++|||+|+++--. --...+..+...|+.- -+. -+.++..+.+.++..|+
T Consensus 356 ~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~-DQ~~Na~~v~~~g~Gv-~l~~~~~~~~~~~e~i~~av~~vm~~~ 430 (472)
T PLN02670 356 ESVGGFL---THCGWNSVVEGLGFGRVLILFPVLN-EQGLNTRLLHGKKLGL-EVPRDERDGSFTSDSVAESVRLAMVDD 430 (472)
T ss_pred cccceee---ecCCcchHHHHHHcCCCEEeCcchh-ccHHHHHHHHHcCeeE-EeeccccCCcCcHHHHHHHHHHHhcCc
Confidence 3344465 5677999999999999999987221 1222334445556654 231 25678777777777665
Q ss_pred HHHHHHHHHH---HhhcccCCCCChHHHHHHHHHHHHHH
Q 003557 750 QKLQALTNKL---KSVRLTCPLFDTARWVKNLERSYFKM 785 (811)
Q Consensus 750 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~y~~~ 785 (811)
+ -..+|+++ ++... ..-.....+..+++.+.+.
T Consensus 431 ~-g~~~r~~a~~l~~~~~--~~~~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 431 A-GEEIRDKAKEMRNLFG--DMDRNNRYVDELVHYLREN 466 (472)
T ss_pred c-hHHHHHHHHHHHHHHh--CcchhHHHHHHHHHHHHHh
Confidence 2 11233332 22221 1234566666666665443
|
|
| >PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00027 Score=74.61 Aligned_cols=157 Identities=16% Similarity=0.162 Sum_probs=100.8
Q ss_pred CcCCCCCCCCcEEEEec--CCC---CCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCC
Q 003557 592 KRSDYGLPEDKFIFACF--NQL---YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDV 666 (811)
Q Consensus 592 ~r~~~gl~~~~~~~~~~--~~~---~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~ 666 (811)
.++.+ ++++..+++-+ +|. .++.|.++++..++.++.|+.++++...+....+.+.+.....+.+ -.+++..
T Consensus 175 ~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~-~~~~~~~- 251 (373)
T PF02684_consen 175 AREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEVHEELIEEILAEYPPD-VSIVIIE- 251 (373)
T ss_pred HHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHhhCCC-CeEEEcC-
Confidence 45556 88777766644 333 2667999999999999999999988765554344466666666553 2333321
Q ss_pred CChHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccC-CccccchhHHH--HHhcCCCCcccc-----------
Q 003557 667 AMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPL-EKMATRVAGSL--CLATGLGEEMIV----------- 732 (811)
Q Consensus 667 ~~~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g-~~~~~r~~~~~--l~~~g~~~~~v~----------- 732 (811)
.+-...++.+|+.| -.+||.|+|+..+|+|.|+..- ...--.++--+ ...+||+. +++
T Consensus 252 ---~~~~~~m~~ad~al----~~SGTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~N-iia~~~v~PEliQ~ 323 (373)
T PF02684_consen 252 ---GESYDAMAAADAAL----AASGTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPN-IIAGREVVPELIQE 323 (373)
T ss_pred ---CchHHHHHhCcchh----hcCCHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechh-hhcCCCcchhhhcc
Confidence 12333457799987 5568999999999999775532 22212222222 11236665 443
Q ss_pred -CCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 003557 733 -NSMKEYEERAVSLALDRQKLQALTNKL 759 (811)
Q Consensus 733 -~~~~~y~~~~~~l~~d~~~~~~~~~~~ 759 (811)
.+++...+.+..+..|++.+.......
T Consensus 324 ~~~~~~i~~~~~~ll~~~~~~~~~~~~~ 351 (373)
T PF02684_consen 324 DATPENIAAELLELLENPEKRKKQKELF 351 (373)
T ss_pred cCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 278888888999999987755544433
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process |
| >PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00027 Score=75.44 Aligned_cols=145 Identities=12% Similarity=0.133 Sum_probs=84.0
Q ss_pred CcCCCCCCCCcEEEEecCCC---CCCCHHHHHHHHHHHhhcCCeEE-EeecCChhhHHHHHHHHHHcCCCCCceEEcCCC
Q 003557 592 KRSDYGLPEDKFIFACFNQL---YKMDPEIFNTWCNILRRVPNSAL-WLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVA 667 (811)
Q Consensus 592 ~r~~~gl~~~~~~~~~~~~~---~K~~~~~~~~~~~il~~~p~~~l-~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~ 667 (811)
.+..+|++++.+++..++-. ..++..+.+++..+.. +.++ ++.|.... +..+. . . .++...+..
T Consensus 175 ~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~---~~~vv~~~G~~~~-~~~~~----~--~--~~~~~~~f~ 242 (352)
T PRK12446 175 GLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL---KYQIVHLCGKGNL-DDSLQ----N--K--EGYRQFEYV 242 (352)
T ss_pred HHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc---CcEEEEEeCCchH-HHHHh----h--c--CCcEEecch
Confidence 45668888776655544422 2333333444443322 2333 33443321 22221 1 1 122333432
Q ss_pred ChHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCcc----ccchhHHHHHhcCCCCccccC---CHHHHHH
Q 003557 668 MKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM----ATRVAGSLCLATGLGEEMIVN---SMKEYEE 740 (811)
Q Consensus 668 ~~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~----~~r~~~~~l~~~g~~~~~v~~---~~~~y~~ 740 (811)
.++.-..|..+|+++ .-+|++|+.|++++|+|.|..+-... ....-+..+...|... .+.. +++...+
T Consensus 243 -~~~m~~~~~~adlvI---sr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~-~l~~~~~~~~~l~~ 317 (352)
T PRK12446 243 -HGELPDILAITDFVI---SRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYAS-VLYEEDVTVNSLIK 317 (352)
T ss_pred -hhhHHHHHHhCCEEE---ECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEE-EcchhcCCHHHHHH
Confidence 123445678899997 35689999999999999998854321 2344567777788766 4432 5788888
Q ss_pred HHHHHhcCHHHHH
Q 003557 741 RAVSLALDRQKLQ 753 (811)
Q Consensus 741 ~~~~l~~d~~~~~ 753 (811)
.+.++.+|++.++
T Consensus 318 ~l~~ll~~~~~~~ 330 (352)
T PRK12446 318 HVEELSHNNEKYK 330 (352)
T ss_pred HHHHHHcCHHHHH
Confidence 8889988987764
|
|
| >PLN02992 coniferyl-alcohol glucosyltransferase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00041 Score=76.26 Aligned_cols=156 Identities=15% Similarity=0.186 Sum_probs=98.6
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCChh----------------h--HHHHHHHHHHcCCCCCceE
Q 003557 601 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA----------------G--EMRLRAYAVAQGVQPDQII 662 (811)
Q Consensus 601 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~----------------~--~~~l~~~~~~~gi~~~rv~ 662 (811)
+.+||.||+....+...-++..+.-|.+.|.-.||.+..+.. . .+.+-+-+.+. +....++
T Consensus 263 ~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR-~~~rg~v 341 (481)
T PLN02992 263 ESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSR-THDRGFV 341 (481)
T ss_pred CceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHH-hcCCCEE
Confidence 569999999999999999999999999999999999852110 0 11111112221 2123478
Q ss_pred EcCCCChHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHHHH-HhcCCCCcccc-----CCHH
Q 003557 663 FTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLC-LATGLGEEMIV-----NSMK 736 (811)
Q Consensus 663 ~~~~~~~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l-~~~g~~~~~v~-----~~~~ 736 (811)
+.++.|+.+.|.- ..+..|+ ..+|-+|++||+++|||+|+++--.= -...+..+ ..+|+.- .+. -+.+
T Consensus 342 v~~W~PQ~~iL~h-~~vg~Fi---tH~G~nS~~Eal~~GVP~l~~P~~~D-Q~~na~~~~~~~g~gv-~~~~~~~~~~~~ 415 (481)
T PLN02992 342 VPSWAPQAEILAH-QAVGGFL---THCGWSSTLESVVGGVPMIAWPLFAE-QNMNAALLSDELGIAV-RSDDPKEVISRS 415 (481)
T ss_pred EeecCCHHHHhCC-cccCeeE---ecCchhHHHHHHHcCCCEEecCccch-hHHHHHHHHHHhCeeE-EecCCCCcccHH
Confidence 8899998888743 2233354 56779999999999999998862211 11122333 3556654 231 2667
Q ss_pred HHHHHHHHHhcCH------HHHHHHHHHHHhhc
Q 003557 737 EYEERAVSLALDR------QKLQALTNKLKSVR 763 (811)
Q Consensus 737 ~y~~~~~~l~~d~------~~~~~~~~~~~~~~ 763 (811)
+..+.+.++..++ ...+++|+.+++.+
T Consensus 416 ~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av 448 (481)
T PLN02992 416 KIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSL 448 (481)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh
Confidence 7777777877653 23344555555544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00065 Score=69.85 Aligned_cols=135 Identities=7% Similarity=-0.022 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-cCChHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Q 003557 161 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME-WNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 239 (811)
Q Consensus 161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 239 (811)
+|..+.....+.+..+.|..+|+++.+..+....+|...|.+... .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455555555666666777777777765555556666666666555 3444447777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcH
Q 003557 240 QGNYADAISCYNEVLRIDPLAA---DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMA 295 (811)
Q Consensus 240 ~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 295 (811)
.++.+.|..+|++++..-+... .+|......-.+.|+.+...++.+++.+..|+..
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 7777777777777776644433 4677777777778888888888888887777633
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03004 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00046 Score=75.40 Aligned_cols=142 Identities=17% Similarity=0.233 Sum_probs=94.2
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCChh-------hHHHHHHHHHHcCCCCCceEEcCCCChHHHH
Q 003557 601 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA-------GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHI 673 (811)
Q Consensus 601 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~-------~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 673 (811)
..+||.||+....+.+..++..+.-|...+...||.+..... ....+-+-+.+. +....++..++.|..+.|
T Consensus 270 ~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er-~~~~g~~v~~W~PQ~~iL 348 (451)
T PLN03004 270 KSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSR-TEDKGMVVKSWAPQVPVL 348 (451)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHh-ccCCcEEEEeeCCHHHHh
Confidence 569999999999999999999999999999999999874311 011122222222 223457888999988877
Q ss_pred HhcCCCcE--EecCCCCCChhHHHHHHHhCCCcccccCCccccchhHHHHH-hcCCCCcccc------CCHHHHHHHHHH
Q 003557 674 RRSSLADL--FLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCL-ATGLGEEMIV------NSMKEYEERAVS 744 (811)
Q Consensus 674 ~~~~~~Dv--~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~-~~g~~~~~v~------~~~~~y~~~~~~ 744 (811)
...+| || ...|-+|++||+++|||+|+++-- .--...+..+. .+|+.- -+. -+.++..+.+.+
T Consensus 349 ---~H~~v~~Fv---TH~G~nS~lEal~~GVP~v~~P~~-~DQ~~na~~~~~~~g~g~-~l~~~~~~~~~~e~l~~av~~ 420 (451)
T PLN03004 349 ---NHKAVGGFV---THCGWNSILEAVCAGVPMVAWPLY-AEQRFNRVMIVDEIKIAI-SMNESETGFVSSTEVEKRVQE 420 (451)
T ss_pred ---CCCccceEe---ccCcchHHHHHHHcCCCEEecccc-ccchhhHHHHHHHhCceE-EecCCcCCccCHHHHHHHHHH
Confidence 44555 65 567789999999999999988731 11122223343 345543 221 256777777777
Q ss_pred HhcCHHH
Q 003557 745 LALDRQK 751 (811)
Q Consensus 745 l~~d~~~ 751 (811)
+..|+..
T Consensus 421 vm~~~~~ 427 (451)
T PLN03004 421 IIGECPV 427 (451)
T ss_pred HhcCHHH
Confidence 7777443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0058 Score=63.89 Aligned_cols=115 Identities=20% Similarity=0.093 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhcCCCCHHHHH
Q 003557 25 DAHSNLGNLMKAQGLVQEAYSCYLEALRI----QPTFAIAWSNLAGLFME---SGDLNRALQYYKE-AVKLKPTFPDAYL 96 (811)
Q Consensus 25 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~p~~~~~~~ 96 (811)
+....+-.+|....+|+.-+++.+.+-.. -++.......+|.++.+ .|+.++|+..+.. .....+.+++.+.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 34444555555566666655555555443 23344455555555555 5666666666655 3333445555565
Q ss_pred HHHHHHHHc---------CChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcC
Q 003557 97 NLGNVYKAL---------GMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERG 139 (811)
Q Consensus 97 ~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g 139 (811)
.+|.+|... ...++|+..|.++.+.+|+...-.+++.++...|
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g 273 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAG 273 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcC
Confidence 555555332 1234455555555555544333333343443333
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0002 Score=67.77 Aligned_cols=92 Identities=26% Similarity=0.316 Sum_probs=77.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHH
Q 003557 233 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 312 (811)
Q Consensus 233 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 312 (811)
-|..++...+|..|+..|.+++..+|..+..+.+.+.++.+..+++.+.....+++++.|+....++.+|........++
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 35556666778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhc
Q 003557 313 AAIKSYKQALLL 324 (811)
Q Consensus 313 ~A~~~~~~al~~ 324 (811)
+|+..++++..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 888888888655
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00018 Score=67.96 Aligned_cols=95 Identities=25% Similarity=0.242 Sum_probs=83.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 003557 27 HSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 106 (811)
Q Consensus 27 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 106 (811)
+...|+.++...+|..|+.+|.+++.++|..+..|.+.+.++++.++++.+.....+++++.|+....++.+|.......
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 34456677777889999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhh
Q 003557 107 MPQEAIMCYQRAVQT 121 (811)
Q Consensus 107 ~~~~A~~~~~~al~~ 121 (811)
.+++|+..++++..+
T Consensus 93 ~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSL 107 (284)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999999988665
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.095 Score=60.58 Aligned_cols=303 Identities=17% Similarity=0.054 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHhhCCC----CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHH
Q 003557 7 NEAAQCCRQALALNPL----LVDAHSNLGNLMK-AQGLVQEAYSCYLEALRIQPTF------AIAWSNLAGLFMESGDLN 75 (811)
Q Consensus 7 ~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~ 75 (811)
..|+++++-+++..+- .+.+.+.+|.++. ...++++|..++++++.+...+ ..+...++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 4567777777743221 3457778888887 6788999999999987765332 234556677887777766
Q ss_pred HHHHHHHHHHhcCCC---C-HHHHHHH--HHHHHHcCChHHHHHHHHHHHhhCC--C---hhH--HHhHHHHHHHcCCHH
Q 003557 76 RALQYYKEAVKLKPT---F-PDAYLNL--GNVYKALGMPQEAIMCYQRAVQTRP--N---AIA--FGNLASTYYERGQAD 142 (811)
Q Consensus 76 ~A~~~~~~al~~~p~---~-~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p--~---~~~--~~~la~~~~~~g~~~ 142 (811)
|...+++.++...+ . ....+.+ ...+...+++..|++.++....... . ..+ ....+.+....+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888888876444 1 1122222 2223333788889998888877642 2 222 223355556667777
Q ss_pred HHHHHHHHHHHc------C----CCcHHHHHHHHHH--HHHcCCHHHHHHHHHHHHh---c---CC---C---C------
Q 003557 143 MAILYYKQAIGC------D----PRFLEAYNNLGNA--LKDVGRVDEAIQCYNQCLS---L---QP---S---H------ 192 (811)
Q Consensus 143 ~A~~~~~~al~~------~----p~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~---~---~p---~---~------ 192 (811)
++++..+++... + +....++..+..+ +...|+++.+...+++.-+ . .+ . +
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~ 276 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLN 276 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEee
Confidence 787777777422 1 1123344444433 4566776666665544422 1 11 0 0
Q ss_pred -----------h-------------HHHHHHHHHHHHcCChHHHHHHHHHHHhccCC-------C---c-----------
Q 003557 193 -----------P-------------QALTNLGNIYMEWNMLPAAASYYKATLAVTTG-------L---S----------- 227 (811)
Q Consensus 193 -----------~-------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-------~---~----------- 227 (811)
+ -++..-+......+..++|.++++++++.-.+ . .
T Consensus 277 ~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~ 356 (608)
T PF10345_consen 277 IGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWL 356 (608)
T ss_pred cccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHH
Confidence 0 01222244445566666777777776643111 0 0
Q ss_pred -----hHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC------CHHHHHHHHHHHHHhCCHHHHHHHHH--------
Q 003557 228 -----APFNNLAVIYKQQGNYADAISCYNEVLRID---PL------AADGLVNRGNTYKEIGRVTDAIQDYI-------- 285 (811)
Q Consensus 228 -----~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~-------- 285 (811)
......+....-.+++.+|...++.+.... |. .+..++..|..+...|+.+.|...|.
T Consensus 357 ~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~ 436 (608)
T PF10345_consen 357 RYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCE 436 (608)
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhh
Confidence 113344566667788888888887776542 21 35677888888888888998988887
Q ss_pred HHHhcCCCcH---HHHHHHHHHHHhCCC
Q 003557 286 RAITIRPTMA---EAHANLASAYKDSGH 310 (811)
Q Consensus 286 ~al~~~p~~~---~~~~~la~~~~~~g~ 310 (811)
.+....+.+. -+..++..++...+.
T Consensus 437 ~~~~~~~~~El~ila~LNl~~I~~~~~~ 464 (608)
T PF10345_consen 437 AANRKSKFRELYILAALNLAIILQYESS 464 (608)
T ss_pred hhccCCcchHHHHHHHHHHHHHhHhhcc
Confidence 3333333321 234455666665554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00073 Score=74.10 Aligned_cols=142 Identities=15% Similarity=0.151 Sum_probs=93.5
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCCh----hhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHh
Q 003557 600 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPA----AGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRR 675 (811)
Q Consensus 600 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~----~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 675 (811)
++.+||.||+...++++..+.-.+.-|+..+...||.+..+. .....+-.-+.++ + .+|....++.|..+.|.-
T Consensus 263 ~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er-~-~~~g~v~~w~PQ~~iL~h 340 (451)
T PLN02410 263 KNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKI-I-SGRGYIVKWAPQKEVLSH 340 (451)
T ss_pred CCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHh-c-cCCeEEEccCCHHHHhCC
Confidence 356999999999999999999999999999999999986331 1011123233332 3 467777799998888743
Q ss_pred cCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHHHHHhc-CCCCccc--cCCHHHHHHHHHHHhcCH
Q 003557 676 SSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLAT-GLGEEMI--VNSMKEYEERAVSLALDR 749 (811)
Q Consensus 676 ~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~-g~~~~~v--~~~~~~y~~~~~~l~~d~ 749 (811)
..+..|+ ..+|-+|++||+++|||+|+++--. -....+..+... |+.- -+ .-+.++..+.+.++..|+
T Consensus 341 -~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~-DQ~~na~~~~~~~~~G~-~~~~~~~~~~v~~av~~lm~~~ 411 (451)
T PLN02410 341 -PAVGGFW---SHCGWNSTLESIGEGVPMICKPFSS-DQKVNARYLECVWKIGI-QVEGDLDRGAVERAVKRLMVEE 411 (451)
T ss_pred -CccCeee---ecCchhHHHHHHHcCCCEEeccccc-cCHHHHHHHHHHhCeeE-EeCCcccHHHHHHHHHHHHcCC
Confidence 3455565 5677899999999999999987321 122222332221 3331 11 126677777777777665
|
|
| >PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00083 Score=75.03 Aligned_cols=180 Identities=12% Similarity=0.175 Sum_probs=117.3
Q ss_pred cEEEEecCCCC---CCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCC
Q 003557 602 KFIFACFNQLY---KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 678 (811)
Q Consensus 602 ~~~~~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 678 (811)
.+|+.+|+... +..++.++...+.+++.|.-.+|-.+.... . .++ +++|.+.++.|..+.|+- ..
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~-~---------~~~-p~Nv~i~~w~Pq~~lL~h-p~ 364 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVE-A---------INL-PANVLTQKWFPQRAVLKH-KN 364 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcC-c---------ccC-CCceEEecCCCHHHHhcC-CC
Confidence 47888887654 467889999999899999755554432211 1 245 689999999998887732 56
Q ss_pred CcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHH
Q 003557 679 ADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQAL 755 (811)
Q Consensus 679 ~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~---~~~~~y~~~~~~l~~d~~~~~~~ 755 (811)
+++|+ ..+|..|+.||++.|||+|.++--.=. ..-+..+...|... .+- -+.++..+++.++.+|+..++..
T Consensus 365 v~~fI---tHGG~~s~~Eal~~GvP~v~iP~~~DQ-~~Na~rv~~~G~G~-~l~~~~~t~~~l~~ai~~vl~~~~y~~~a 439 (507)
T PHA03392 365 VKAFV---TQGGVQSTDEAIDALVPMVGLPMMGDQ-FYNTNKYVELGIGR-ALDTVTVSAAQLVLAIVDVIENPKYRKNL 439 (507)
T ss_pred CCEEE---ecCCcccHHHHHHcCCCEEECCCCccH-HHHHHHHHHcCcEE-EeccCCcCHHHHHHHHHHHhCCHHHHHHH
Confidence 88886 578899999999999999988743211 12234445567654 332 26788888888999998877776
Q ss_pred HHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCCCC
Q 003557 756 TNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLHCSGQKPQHFKVTENDLD 806 (811)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~~~~~~~~~~~~~~~~~~ 806 (811)
++-.+. ....|.=-.++.+..+|.+. |+ |+...|+.....||.
T Consensus 440 ~~ls~~-~~~~p~~~~~~av~~iE~v~-----r~--~~g~~~lr~~~~~l~ 482 (507)
T PHA03392 440 KELRHL-IRHQPMTPLHKAIWYTEHVI-----RN--KHGNTSLKTKAANVS 482 (507)
T ss_pred HHHHHH-HHhCCCCHHHHHHHHHHHHH-----hC--CCCcccccccccCCC
Confidence 654333 33344334566666666543 21 124445555555543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0072 Score=63.18 Aligned_cols=180 Identities=20% Similarity=0.138 Sum_probs=101.1
Q ss_pred hhHHHhHHHHHHHcCCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhcCCCChHHH
Q 003557 125 AIAFGNLASTYYERGQADMAILYYKQAIGC----DPRFLEAYNNLGNALKD---VGRVDEAIQCYNQ-CLSLQPSHPQAL 196 (811)
Q Consensus 125 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~p~~~~~~ 196 (811)
..+..++-..|....+|+.-+++.+.+-.. -++...+...+|.++.+ .|+.++|+..+.. .....+.+++++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 556667777788888888888887777655 44456667777888877 7888888888888 444566677888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q 003557 197 TNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR 276 (811)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 276 (811)
..+|.+|... + ++....+ ....++|+..|.++.+.+|+. ..-.+++.++...|.
T Consensus 221 gL~GRIyKD~---------~---~~s~~~d-------------~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 221 GLLGRIYKDL---------F---LESNFTD-------------RESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHH---------H---HHcCccc-------------hHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCC
Confidence 8888777532 0 0000000 011444555555555544322 222222333333332
Q ss_pred HHHHHHHHHHHH--------h----cCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChH
Q 003557 277 VTDAIQDYIRAI--------T----IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 330 (811)
Q Consensus 277 ~~~A~~~~~~al--------~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 330 (811)
..+.....++.. + ..-++...+..++.+..-.|++++|.+.+++++.+.|..-.
T Consensus 275 ~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 275 DFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 111111111110 0 01123334455666777788888888888888888766543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.017 Score=62.19 Aligned_cols=269 Identities=13% Similarity=0.067 Sum_probs=129.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHH
Q 003557 30 LGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP--------TFPDAYLNLGNV 101 (811)
Q Consensus 30 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~ 101 (811)
.+.+..+.|+++.-.+..... ..+.....+..+......++++++..+.+++...-- ......+..-..
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~---~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~ 80 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQS---NEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK 80 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhc---cCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 356677888888833332222 122234555556666688888888888888765421 111111111111
Q ss_pred HHHcCChHHHHHHHHHHHhhCCC----hhHHHhHHHHHHHcCCHHH--HHHHHHHHHHc----CCCcHHHHHHHHHHHHH
Q 003557 102 YKALGMPQEAIMCYQRAVQTRPN----AIAFGNLASTYYERGQADM--AILYYKQAIGC----DPRFLEAYNNLGNALKD 171 (811)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~----~~~~~~la~~~~~~g~~~~--A~~~~~~al~~----~p~~~~~~~~la~~~~~ 171 (811)
+......+++..+.......... ...|...-... ..+++. -+-.++..+-. .......+...+.+..+
T Consensus 81 lq~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~--~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk 158 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNM--QDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARK 158 (352)
T ss_pred HhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 12222333333333211110000 11111111111 111111 11111222211 33445566777777777
Q ss_pred cCCHHHHHHHHHHHHhcCC----CChHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-CCC--chHHHHHHHHHHH--cCC
Q 003557 172 VGRVDEAIQCYNQCLSLQP----SHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-TGL--SAPFNNLAVIYKQ--QGN 242 (811)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~--~~~~~~la~~~~~--~g~ 242 (811)
.|+++.|...+.++....+ ..+.+....+.++...|+..+|+..++..+... ... ......+...... ...
T Consensus 159 ~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (352)
T PF02259_consen 159 AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVI 238 (352)
T ss_pred CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccc
Confidence 7777777777777666442 135566666777777777777777776666521 111 0000000000000 000
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhC
Q 003557 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEI------GRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 308 (811)
Q Consensus 243 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 308 (811)
........ .......++..+|...... +..+++.+.|+++.+.+|+...+|+.+|..+.+.
T Consensus 239 ~~~~~~~~-----~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 239 SSTNLDKE-----SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred cccchhhh-----hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 00000000 0001134566667666666 7888888999999999988888888888776543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.076 Score=61.38 Aligned_cols=302 Identities=16% Similarity=0.076 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCC--CHH----HHHHHHHHHHHcCCh
Q 003557 40 VQEAYSCYLEALRIQ-PT---FAIAWSNLAGLFM-ESGDLNRALQYYKEAVKLKPT--FPD----AYLNLGNVYKALGMP 108 (811)
Q Consensus 40 ~~~A~~~~~~al~~~-p~---~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~~~----~~~~la~~~~~~g~~ 108 (811)
...|+.+++.+++.. +. .+.+.+.+|.++. ...++++|+.++++++.+... ..+ ..+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 345778888777422 11 3678889999887 789999999999999887643 222 456778888888877
Q ss_pred HHHHHHHHHHHhhCCC-----hhHHHhH--HHHHHHcCCHHHHHHHHHHHHHcC--CCcHHH----HHHHHHHHHHcCCH
Q 003557 109 QEAIMCYQRAVQTRPN-----AIAFGNL--ASTYYERGQADMAILYYKQAIGCD--PRFLEA----YNNLGNALKDVGRV 175 (811)
Q Consensus 109 ~~A~~~~~~al~~~p~-----~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~----~~~la~~~~~~g~~ 175 (811)
. |...+++.++...+ ....+.+ ...+...+++..|++.++...... ..+..+ ....+.+....+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 7 99999998886433 1112222 223333479999999999988654 344332 22335556677878
Q ss_pred HHHHHHHHHHHhcCC------C----ChHHHHHHHH--HHHHcCChHHHHHHHHHHHh---c---cC------CC-----
Q 003557 176 DEAIQCYNQCLSLQP------S----HPQALTNLGN--IYMEWNMLPAAASYYKATLA---V---TT------GL----- 226 (811)
Q Consensus 176 ~~A~~~~~~al~~~p------~----~~~~~~~la~--~~~~~g~~~~A~~~~~~~l~---~---~~------~~----- 226 (811)
+++++.++++..... + ...++..+.. ++...|+++.+...+++.-+ . .+ ++
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 888888888754221 1 1234444443 34566776677666554432 1 11 00
Q ss_pred ------------ch-------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------C---CC-----------
Q 003557 227 ------------SA-------------PFNNLAVIYKQQGNYADAISCYNEVLRID-------P---LA----------- 260 (811)
Q Consensus 227 ------------~~-------------~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p---~~----------- 260 (811)
.. .|..-+......+..++|.++++++++.- + ..
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~ 355 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQW 355 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHH
Confidence 00 12222445556677768888888776541 1 00
Q ss_pred -----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---CC------cHHHHHHHHHHHHhCCCHHHHHHHHH-------
Q 003557 261 -----ADGLVNRGNTYKEIGRVTDAIQDYIRAITIR---PT------MAEAHANLASAYKDSGHVEAAIKSYK------- 319 (811)
Q Consensus 261 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~------- 319 (811)
.......+.+..-.+++.+|....+.+.+.. |. .+..++..|..+...|+.+.|...|.
T Consensus 356 ~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~ 435 (608)
T PF10345_consen 356 LRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLC 435 (608)
T ss_pred HHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhh
Confidence 0134556677778899999999998877652 22 36688899999999999999999998
Q ss_pred -HHHhcCCCChHHH---HHHHHHhhhc
Q 003557 320 -QALLLRPDFPEAT---CNLLHTLQCV 342 (811)
Q Consensus 320 -~al~~~p~~~~~~---~~l~~~~~~~ 342 (811)
.+....+.+.-.. .|+...+...
T Consensus 436 ~~~~~~~~~~El~ila~LNl~~I~~~~ 462 (608)
T PF10345_consen 436 EAANRKSKFRELYILAALNLAIILQYE 462 (608)
T ss_pred hhhccCCcchHHHHHHHHHHHHHhHhh
Confidence 4445555544333 3444444433
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.048 Score=61.97 Aligned_cols=276 Identities=22% Similarity=0.195 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcC---
Q 003557 40 VQEAYSCYLEALRIQPTFAIAWSNLAGLFMES-----GDLNRALQYYKEAVKL-----KPTFPDAYLNLGNVYKALG--- 106 (811)
Q Consensus 40 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g--- 106 (811)
..+|...++.+.+. .+..+...+|.+|..- .|.+.|+.+|+.+.+. ...++.+.+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 45677777776554 4566777777777654 5788888888888661 1124556778888887743
Q ss_pred --ChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcC---CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCCHHH
Q 003557 107 --MPQEAIMCYQRAVQTRPNAIAFGNLASTYYERG---QADMAILYYKQAIGCDPRFLEAYNNLGNALKD----VGRVDE 177 (811)
Q Consensus 107 --~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~ 177 (811)
+.+.|..+|.++-+.. .+.+.+.+|.++..-. +...|.++|..+.+. .+..+.+.++.+|.. ..+...
T Consensus 306 ~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred cccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHH
Confidence 5667888888776542 3455566677666554 567888888887654 445677777777754 356788
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHc-CChHHHHHHHHHHHhccCCCchH----HHHHHHHHHH----cCCHHHHHH
Q 003557 178 AIQCYNQCLSLQPSHPQALTNLGNIYMEW-NMLPAAASYYKATLAVTTGLSAP----FNNLAVIYKQ----QGNYADAIS 248 (811)
Q Consensus 178 A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~----~~~la~~~~~----~g~~~~A~~ 248 (811)
|..+++++.+.+ ++.+...++..+... +.++.+...+....+..-..... +......... ..+.+.+..
T Consensus 383 A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 383 AFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 888888888876 444445555444332 66666665555444433221111 1111101111 124556666
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh-CC--CHHHHHHHHHHH
Q 003557 249 CYNEVLRIDPLAADGLVNRGNTYKEI----GRVTDAIQDYIRAITIRPTMAEAHANLASAYKD-SG--HVEAAIKSYKQA 321 (811)
Q Consensus 249 ~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g--~~~~A~~~~~~a 321 (811)
.+.++.. ..+..+...+|.+|..- .+++.|...|.++.... ....+++|.++.. .| ....|.++|.++
T Consensus 461 ~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~ 535 (552)
T KOG1550|consen 461 LYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQA 535 (552)
T ss_pred HHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHH
Confidence 6666544 35567778888877654 45888888888888776 7788888888875 22 267888888888
Q ss_pred HhcCCC
Q 003557 322 LLLRPD 327 (811)
Q Consensus 322 l~~~p~ 327 (811)
.+.+..
T Consensus 536 ~~~~~~ 541 (552)
T KOG1550|consen 536 SEEDSR 541 (552)
T ss_pred HhcCch
Confidence 876654
|
|
| >PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0012 Score=72.81 Aligned_cols=159 Identities=14% Similarity=0.066 Sum_probs=95.0
Q ss_pred CCcCCCCCCCCcEEEEec-C-CC---CCCCHHHHHHHH-HHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEc
Q 003557 591 PKRSDYGLPEDKFIFACF-N-QL---YKMDPEIFNTWC-NILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFT 664 (811)
Q Consensus 591 ~~r~~~gl~~~~~~~~~~-~-~~---~K~~~~~~~~~~-~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~ 664 (811)
..|+++|++++..+++-+ + |. .++.|.++++.. +.++ ++.++++...++..++.+++.....++ -.+.+.
T Consensus 402 ~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~--~~l~fvvp~a~~~~~~~i~~~~~~~~~--~~~~ii 477 (608)
T PRK01021 402 SWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLA--STHQLLVSSANPKYDHLILEVLQQEGC--LHSHIV 477 (608)
T ss_pred HHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhc--cCeEEEEecCchhhHHHHHHHHhhcCC--CCeEEe
Confidence 468889998676666643 3 32 266788888765 1222 246665543333324556665554332 012232
Q ss_pred -CCCChHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCc-cccchhHHHHH----hcCC----------CC
Q 003557 665 -DVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEK-MATRVAGSLCL----ATGL----------GE 728 (811)
Q Consensus 665 -~~~~~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~-~~~r~~~~~l~----~~g~----------~~ 728 (811)
+. +-...++.||+.| -.+||.|+|++.+|+|.|+..--. ..-.++--+++ .+|+ ||
T Consensus 478 ~~~----~~~~~m~aaD~aL----aaSGTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPE 549 (608)
T PRK01021 478 PSQ----FRYELMRECDCAL----AKCGTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPE 549 (608)
T ss_pred cCc----chHHHHHhcCeee----ecCCHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchh
Confidence 32 1235568899998 556899999999999977643222 21222222232 1333 55
Q ss_pred ccc----cCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 003557 729 EMI----VNSMKEYEERAVSLALDRQKLQALTNKLKSVR 763 (811)
Q Consensus 729 ~~v----~~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~ 763 (811)
++ ..+++...+. +++..|++.++++++.+++.+
T Consensus 550 -llqgQ~~~tpe~La~~-l~lL~d~~~r~~~~~~l~~lr 586 (608)
T PRK01021 550 -FIGGKKDFQPEEVAAA-LDILKTSQSKEKQKDACRDLY 586 (608)
T ss_pred -hcCCcccCCHHHHHHH-HHHhcCHHHHHHHHHHHHHHH
Confidence 77 3467887766 699999999999988776644
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.021 Score=63.17 Aligned_cols=161 Identities=15% Similarity=-0.006 Sum_probs=105.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHhccCCCc-hH------HHHHHHHHH----HcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 003557 200 GNIYMEWNMLPAAASYYKATLAVTTGLS-AP------FNNLAVIYK----QQGNYADAISCYNEVLRIDPLAADGLVNRG 268 (811)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~------~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~la 268 (811)
..+.--.|+-+.++..+.++.+...-.. .+ |+.....+. .....+.|.++++...+..|+..-.++..|
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~g 274 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEG 274 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3333445677777777777665221111 11 111111111 245678899999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCh-HHHHHHHHHhhhcC
Q 003557 269 NTYKEIGRVTDAIQDYIRAITIRPTM----AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP-EATCNLLHTLQCVC 343 (811)
Q Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~ 343 (811)
+++...|+.++|++.|++++.....- .-.++.++.++..+.++++|.++|.+..+.+.-.. -..+..+.++...+
T Consensus 275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~ 354 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLG 354 (468)
T ss_pred HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhc
Confidence 99999999999999999888543322 33678899999999999999999999998654432 23344455666677
Q ss_pred ChhhHhHHHHHHHHHHH
Q 003557 344 SWEDRDRMFSEVEGIIR 360 (811)
Q Consensus 344 ~~~~a~~~~~~a~~l~~ 360 (811)
+.+.+....+++.+++.
T Consensus 355 ~~~~~~~~~~~a~~l~~ 371 (468)
T PF10300_consen 355 REEEAKEHKKEAEELFR 371 (468)
T ss_pred cchhhhhhHHHHHHHHH
Confidence 77333333344444443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0027 Score=66.16 Aligned_cols=276 Identities=14% Similarity=0.116 Sum_probs=149.4
Q ss_pred CCCCCChhHhhHHHHhcccCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCC--C-----------HHHHHHHHHh
Q 003557 433 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM--S-----------SDMIAKLINE 499 (811)
Q Consensus 433 ~~~~~h~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~~i~~ 499 (811)
=|..+-+.-+|+.++++.+.+.+.||++.+-.. +...+-++...-.+..+..- + ..++.+.+++
T Consensus 5 iDi~~p~hvhfFk~~I~eL~~~GheV~it~R~~---~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~ 81 (335)
T PF04007_consen 5 IDITHPAHVHFFKNIIRELEKRGHEVLITARDK---DETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKK 81 (335)
T ss_pred EECCCchHHHHHHHHHHHHHhCCCEEEEEEecc---chHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 355555667899999999998889999877432 23455566666666655432 1 2568899999
Q ss_pred CCCeEEEeCCCCCCCcchhhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCcCCC----CCCcc--ceEEcCCcc-
Q 003557 500 DKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYA----HIYSE--KLVHVPHCY- 572 (811)
Q Consensus 500 ~~~dilv~~~~~~~~~~~~~~~~r~Apvq~~~~g~~~t~g~~~~d~~~~d~~~~p~~~~----~~~~e--~~~~lp~~~- 572 (811)
.++||+|- ++. ..-..+....-.|+.+.. =.+.+......-+=++|.++.|.... ..|.. ++.+.++..
T Consensus 82 ~~pDv~is--~~s-~~a~~va~~lgiP~I~f~-D~e~a~~~~~Lt~Pla~~i~~P~~~~~~~~~~~G~~~~i~~y~G~~E 157 (335)
T PF04007_consen 82 FKPDVAIS--FGS-PEAARVAFGLGIPSIVFN-DTEHAIAQNRLTLPLADVIITPEAIPKEFLKRFGAKNQIRTYNGYKE 157 (335)
T ss_pred hCCCEEEe--cCc-HHHHHHHHHhCCCeEEEe-cCchhhccceeehhcCCeeECCcccCHHHHHhcCCcCCEEEECCeee
Confidence 99999972 221 111112222224543321 11111111111222456666665432 12222 354465421
Q ss_pred ccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCC----CCCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHH
Q 003557 573 FVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQ----LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLR 648 (811)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~----~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~ 648 (811)
+.+-+ ++. |+ +....++|++++.+++.-+.. ..+.+..++.-..+.++...+.++++...... .
T Consensus 158 ~ayl~----~F~--Pd-~~vl~~lg~~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~-~---- 225 (335)
T PF04007_consen 158 LAYLH----PFK--PD-PEVLKELGLDDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQ-R---- 225 (335)
T ss_pred EEeec----CCC--CC-hhHHHHcCCCCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcch-h----
Confidence 11111 122 22 346778998777666655442 12444455544445556666654444333222 1
Q ss_pred HHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccc-cCCccccchhHHHHHhcCCC
Q 003557 649 AYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITL-PLEKMATRVAGSLCLATGLG 727 (811)
Q Consensus 649 ~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~-~g~~~~~r~~~~~l~~~g~~ 727 (811)
..++..+ +.+.+. ..+.+.++.-+|+++ .+|||.+.||-.+|+|+|.. +|... -|. ..|..-|+-
T Consensus 226 ~~~~~~~-----~~i~~~--~vd~~~Ll~~a~l~I----g~ggTMa~EAA~LGtPaIs~~~g~~~--~vd-~~L~~~Gll 291 (335)
T PF04007_consen 226 ELFEKYG-----VIIPPE--PVDGLDLLYYADLVI----GGGGTMAREAALLGTPAISCFPGKLL--AVD-KYLIEKGLL 291 (335)
T ss_pred hHHhccC-----ccccCC--CCCHHHHHHhcCEEE----eCCcHHHHHHHHhCCCEEEecCCcch--hHH-HHHHHCCCe
Confidence 2223222 444442 224444556689988 77899999999999999964 33311 122 456666772
Q ss_pred CccccCCHHHHHHHHH
Q 003557 728 EEMIVNSMKEYEERAV 743 (811)
Q Consensus 728 ~~~v~~~~~~y~~~~~ 743 (811)
+-..|+++-++.+.
T Consensus 292 --~~~~~~~ei~~~v~ 305 (335)
T PF04007_consen 292 --YHSTDPDEIVEYVR 305 (335)
T ss_pred --EecCCHHHHHHHHH
Confidence 45678888776333
|
They are found in archaea and some bacteria and have no known function. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.028 Score=63.82 Aligned_cols=276 Identities=24% Similarity=0.193 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcC---
Q 003557 6 LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ-----GLVQEAYSCYLEALRI-----QPTFAIAWSNLAGLFMESG--- 72 (811)
Q Consensus 6 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g--- 72 (811)
..+|...++.+-+. .+..+...+|.++..- .+.++|+.+|+.+.+. ...++.+.+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 56788888887654 4677888888888764 6899999999998771 1124567889999998853
Q ss_pred --CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCChhHHHhHHHHHHHc----CCHHH
Q 003557 73 --DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG---MPQEAIMCYQRAVQTRPNAIAFGNLASTYYER----GQADM 143 (811)
Q Consensus 73 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~----g~~~~ 143 (811)
+.+.|..+|.++-+.. ++.+.+.+|.++..-. +...|.++|..+.+. -...+.+.++.+|..- .+...
T Consensus 306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-G~~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-GHILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-CChHHHHHHHHHHHhCCCcCCCHHH
Confidence 7788999999998774 5678888999887765 567999999998653 2367777888877653 57899
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCChHH----HHHHHHHHHHc----CChHHHHH
Q 003557 144 AILYYKQAIGCDPRFLEAYNNLGNALKDV-GRVDEAIQCYNQCLSLQPSHPQA----LTNLGNIYMEW----NMLPAAAS 214 (811)
Q Consensus 144 A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~----g~~~~A~~ 214 (811)
|..++.++.+.. .+.+...++..+... ++++.+.-.+....+..-..+.. +.......... .+.+.+..
T Consensus 383 A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 383 AFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 999999999887 344455555544332 78888877776666554332221 11111111111 13445555
Q ss_pred HHHHHHhccCCCchHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHH
Q 003557 215 YYKATLAVTTGLSAPFNNLAVIYKQQ----GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI---GRVTDAIQDYIRA 287 (811)
Q Consensus 215 ~~~~~l~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~a 287 (811)
.+.++.. ..+..+...++.+|..- .+++.|...|.++.... ....+++|.++..- ..+..|..+|.++
T Consensus 461 ~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~ 535 (552)
T KOG1550|consen 461 LYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQA 535 (552)
T ss_pred HHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHH
Confidence 5555443 44567777888887754 46999999999998876 88999999998752 1278999999999
Q ss_pred HhcCCC
Q 003557 288 ITIRPT 293 (811)
Q Consensus 288 l~~~p~ 293 (811)
.+.+..
T Consensus 536 ~~~~~~ 541 (552)
T KOG1550|consen 536 SEEDSR 541 (552)
T ss_pred HhcCch
Confidence 887654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00011 Score=51.32 Aligned_cols=41 Identities=39% Similarity=0.465 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 003557 296 EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLL 336 (811)
Q Consensus 296 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 336 (811)
.++..+|..|...|++++|++.|+++++.+|++++++..++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 34555666666666666666666666666666666655544
|
|
| >TIGR02094 more_P_ylases alpha-glucan phosphorylases | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0016 Score=73.68 Aligned_cols=172 Identities=16% Similarity=0.181 Sum_probs=108.4
Q ss_pred CCCCcEEEEecCCC--CCCCHHHHHHHHHHHh--hc--CCeEEEeecCChhh-------HHHHHHHHHHcCCCCCceEEc
Q 003557 598 LPEDKFIFACFNQL--YKMDPEIFNTWCNILR--RV--PNSALWLLRFPAAG-------EMRLRAYAVAQGVQPDQIIFT 664 (811)
Q Consensus 598 l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~--~~--p~~~l~l~~~~~~~-------~~~l~~~~~~~gi~~~rv~~~ 664 (811)
+.++.+++|.+.|+ +|...-++....++++ .. .+..+++.|.+... ...+....+.-.+ ++||+|.
T Consensus 385 ~dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~-~~kv~f~ 463 (601)
T TIGR02094 385 LDPDVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEF-RGRIVFL 463 (601)
T ss_pred cCCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccC-CCCEEEE
Confidence 34577889988888 5999888888877765 32 34788888866422 2344444443335 6799998
Q ss_pred CCCChHHHH--HhcCCCcEEec-CCC-CCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCcccc-------
Q 003557 665 DVAMKQEHI--RRSSLADLFLD-TPL-CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV------- 732 (811)
Q Consensus 665 ~~~~~~~~~--~~~~~~Dv~ld-~~~-~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~------- 732 (811)
. .+.+-+ ..+..+||+|. |+. ++. ||+-+=||.-|.+.+|.....+..-.. |-+.+.+.
T Consensus 464 ~--~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~~-------~~nGf~f~~~~~~~~ 534 (601)
T TIGR02094 464 E--NYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGYD-------GDNGWAIGDGEEYDD 534 (601)
T ss_pred c--CCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccCC-------CCcEEEECCCccccc
Confidence 7 333322 24799999999 774 887 999999999999999664322222111 22331222
Q ss_pred ------CCHHHHHHHH---H-HHhcC------HH-HHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 003557 733 ------NSMKEYEERA---V-SLALD------RQ-KLQALTNKLKSVRLTCPLFDTARWVKNLERSY 782 (811)
Q Consensus 733 ------~~~~~y~~~~---~-~l~~d------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 782 (811)
.+.+++.++. + .+..+ |. ..+-+++.++.. .|.|++.+++++..+.|
T Consensus 535 ~~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~---~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 535 EEEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATI---APRFSTNRMVREYVDKF 598 (601)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhcc---CCCCCHHHHHHHHHHHh
Confidence 3555555443 3 33433 22 344444444332 56799999999988876
|
This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343. |
| >PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0019 Score=71.48 Aligned_cols=103 Identities=17% Similarity=0.273 Sum_probs=74.5
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCChhh---HHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcC
Q 003557 601 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG---EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS 677 (811)
Q Consensus 601 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~---~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 677 (811)
..+||.+|+......+..++..+.-|.+.+...||.++.+... ...+-.-+.+. +....++..++.|..+.|.- .
T Consensus 283 ~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r-~~~~g~~v~~w~PQ~~vL~h-~ 360 (477)
T PLN02863 283 HKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDR-VAGRGLVIRGWAPQVAILSH-R 360 (477)
T ss_pred CceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHH-hccCCEEecCCCCHHHHhcC-C
Confidence 4589999998888888888888888999998889988743210 11121122221 11345788899998887743 4
Q ss_pred CCcEEecCCCCCChhHHHHHHHhCCCccccc
Q 003557 678 LADLFLDTPLCNAHTTGTDILWAGLPMITLP 708 (811)
Q Consensus 678 ~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~ 708 (811)
.++.|+ ..+|-+|++||+++|||+|+++
T Consensus 361 ~v~~fv---tH~G~nS~~Eal~~GvP~l~~P 388 (477)
T PLN02863 361 AVGAFL---THCGWNSVLEGLVAGVPMLAWP 388 (477)
T ss_pred CcCeEE---ecCCchHHHHHHHcCCCEEeCC
Confidence 577886 5777899999999999999886
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.026 Score=60.71 Aligned_cols=261 Identities=13% Similarity=0.037 Sum_probs=144.2
Q ss_pred CCCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcC
Q 003557 2 RKGRLNEAAQCCRQALALNP-LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ--------PTFAIAWSNLAGLFMESG 72 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g 72 (811)
+.|+|+. +++.+...+ +..+..+..+......++++++....+++...- +......+..-..+....
T Consensus 10 rl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~ 85 (352)
T PF02259_consen 10 RLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLV 85 (352)
T ss_pred hcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHH
Confidence 4567777 333333222 234566666777779999999999998886632 111111111111222233
Q ss_pred CHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChH---HHHHHHHHHHhh--CCC--hhHHHhHHHHHHHcCCH
Q 003557 73 DLNRALQYYKEAVKLKPTF----PDAYLNLGNVYKALGMPQ---EAIMCYQRAVQT--RPN--AIAFGNLASTYYERGQA 141 (811)
Q Consensus 73 ~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~---~A~~~~~~al~~--~p~--~~~~~~la~~~~~~g~~ 141 (811)
..+++..+....... +.. ...|...-... ..+++ .-+..=.-++.. .+. ...+..++.+..+.|++
T Consensus 86 Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~~~--~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~ 162 (352)
T PF02259_consen 86 ELEEIIELKSNLSQN-PQDLKSLLKRWRSRLPNM--QDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNF 162 (352)
T ss_pred HHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCc
Confidence 444444443222111 110 11122111111 12221 122211222220 122 77899999999999999
Q ss_pred HHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC--hHHHHHHHHHHHH--cCChHHH
Q 003557 142 DMAILYYKQAIGCDP----RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL-QPSH--PQALTNLGNIYME--WNMLPAA 212 (811)
Q Consensus 142 ~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~--~~~~~~la~~~~~--~g~~~~A 212 (811)
+.|...+.++...++ ..+.+....+.++...|+..+|+..++..++. .... ......+...... .......
T Consensus 163 ~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (352)
T PF02259_consen 163 QLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTN 242 (352)
T ss_pred HHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccc
Confidence 999999999987542 24567888899999999999999999998882 2211 1111111100000 0000000
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 003557 213 ASYYKATLAVTTGLSAPFNNLAVIYKQQ------GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 274 (811)
Q Consensus 213 ~~~~~~~l~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 274 (811)
..... ......++..+|...... ++.+++...|.++.+.+|....+|...|..+...
T Consensus 243 ~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 243 LDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred hhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 00000 001123455666666666 8899999999999999999999999988877654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00096 Score=63.34 Aligned_cols=104 Identities=16% Similarity=0.142 Sum_probs=82.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCC----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 003557 230 FNNLAVIYKQQGNYADAISCYNEVLRI--------DPLA----------ADGLVNRGNTYKEIGRVTDAIQDYIRAITIR 291 (811)
Q Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 291 (811)
+..-|+-+++.|+|.+|...|..++.. .|.+ ...+.++++|+...|+|-++++.....+..+
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 344455556666666666666555322 3433 3368889999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHH
Q 003557 292 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATC 333 (811)
Q Consensus 292 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 333 (811)
|.+..+++..|.+....=+..+|..-|.++++++|.-..+..
T Consensus 261 ~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 261 PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 999999999999999999999999999999999998665544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00012 Score=51.31 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 003557 262 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 303 (811)
Q Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 303 (811)
.++..+|..|...|++++|++.|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 355666666666666666666666666666666666666553
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.15 Score=54.23 Aligned_cols=354 Identities=11% Similarity=0.056 Sum_probs=199.3
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh
Q 003557 8 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD-LNRALQYYKEAVK 86 (811)
Q Consensus 8 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~ 86 (811)
.-..+|+.++...+.+...|........+.+.+.+-...|.+++..+|+++..|..-|.-.+..+. .+.|..+|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 345678888888888899999888888888889999999999999999999999988887777665 8999999999999
Q ss_pred cCCCCHHHHHHHHHH---HHH--------cC----Ch-------HHH-----------------H--HHHHH---H----
Q 003557 87 LKPTFPDAYLNLGNV---YKA--------LG----MP-------QEA-----------------I--MCYQR---A---- 118 (811)
Q Consensus 87 ~~p~~~~~~~~la~~---~~~--------~g----~~-------~~A-----------------~--~~~~~---a---- 118 (811)
.+|+++..|...-.. |.. .| +- +.+ . ...+. +
T Consensus 169 ~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~ 248 (568)
T KOG2396|consen 169 FNPDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQ 248 (568)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHH
Confidence 999988765332111 100 00 00 000 0 00000 0
Q ss_pred -------HhhCCC-hhHHHhHHHH----HHH---------------cCCHHHHHHHHHHHHHcCCCcHH--HHHHHHHHH
Q 003557 119 -------VQTRPN-AIAFGNLAST----YYE---------------RGQADMAILYYKQAIGCDPRFLE--AYNNLGNAL 169 (811)
Q Consensus 119 -------l~~~p~-~~~~~~la~~----~~~---------------~g~~~~A~~~~~~al~~~p~~~~--~~~~la~~~ 169 (811)
....|. +..+..++.- +.. --+-+.....|+.+++.-|...- .|..+-.-.
T Consensus 249 k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~ 328 (568)
T KOG2396|consen 249 KNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLER 328 (568)
T ss_pred HHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 001222 2222222211 110 11223345677777655443221 122211111
Q ss_pred HH---cCCHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHcCChHHH-HHHHHHHHhcc--------------CCCch
Q 003557 170 KD---VGRVDEAIQCYNQCLSL---QPSHPQALTNLGNIYMEWNMLPAA-ASYYKATLAVT--------------TGLSA 228 (811)
Q Consensus 170 ~~---~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~~l~~~--------------~~~~~ 228 (811)
.. ......-...++++.+. .+..+.-+..+..++.......++ .......+..+ ..+..
T Consensus 329 ~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q 408 (568)
T KOG2396|consen 329 FTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQ 408 (568)
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhH
Confidence 11 11334444555555543 344455555555555544432222 22211111110 00111
Q ss_pred HHHHHHHHHHH---------------cCC-HHHHHH--HHHHHHhc-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003557 229 PFNNLAVIYKQ---------------QGN-YADAIS--CYNEVLRI-DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 289 (811)
Q Consensus 229 ~~~~la~~~~~---------------~g~-~~~A~~--~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (811)
..+......++ .|+ ...... .+..+... .++....-..+-..+.+.|-+.+|.+.|.+...
T Consensus 409 ~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~ 488 (568)
T KOG2396|consen 409 MLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE 488 (568)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 11111000000 111 111110 11111111 233344445556677788889999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHHHH
Q 003557 290 IRPTMAEAHANLASAYKDS--GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRR 361 (811)
Q Consensus 290 ~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l~~~ 361 (811)
+-|-+...+..+.++-..+ -+...+.++|+.++.....+++.|.+....-...|.-+.+...+.+|.+.++.
T Consensus 489 lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~ 562 (568)
T KOG2396|consen 489 LPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQG 562 (568)
T ss_pred CCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHhhCh
Confidence 9888887777766654332 24788899999999888899999999888888888888888888888776543
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0015 Score=62.12 Aligned_cols=101 Identities=22% Similarity=0.213 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003557 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRI--------QPTF----------AIAWSNLAGLFMESGDLNRALQYYKEAV 85 (811)
Q Consensus 24 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al 85 (811)
..++...|+-+++.|+|.+|...|..++.. .|.. ...+.++.+|++..|+|-++++.....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 457788899999999999999999988652 3433 3467788888888999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 003557 86 KLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124 (811)
Q Consensus 86 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 124 (811)
...|.+..+++..|.+....-+..+|..-|.++++++|.
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 999999999999999988888889999999999998887
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0024 Score=63.13 Aligned_cols=161 Identities=17% Similarity=0.080 Sum_probs=107.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHH
Q 003557 23 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP-DAYLNLGNV 101 (811)
Q Consensus 23 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~ 101 (811)
..+.-+..+.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+...-....... .........
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 3445566677778888888888888888888888888888888888888888888887776533322211 111112233
Q ss_pred HHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHcCCHHHH
Q 003557 102 YKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDP--RFLEAYNNLGNALKDVGRVDEA 178 (811)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A 178 (811)
+.+.....+.. .+++.+..+|+ ....+.++..+...|+.++|.+.+-..++.+. ++..+...+..++...|.-+.+
T Consensus 213 l~qaa~~~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 213 LEQAAATPEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHHhcCCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 33333333322 33445566776 88888888888888888888888888876543 3455677777777777755555
Q ss_pred HHHHHH
Q 003557 179 IQCYNQ 184 (811)
Q Consensus 179 ~~~~~~ 184 (811)
...+++
T Consensus 292 ~~~~RR 297 (304)
T COG3118 292 VLAYRR 297 (304)
T ss_pred HHHHHH
Confidence 544444
|
|
| >PLN02554 UDP-glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0025 Score=70.95 Aligned_cols=153 Identities=20% Similarity=0.231 Sum_probs=97.0
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCChh-----------hH-HHHHHHHHHcCCCCCceEEcCCCC
Q 003557 601 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA-----------GE-MRLRAYAVAQGVQPDQIIFTDVAM 668 (811)
Q Consensus 601 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~-----------~~-~~l~~~~~~~gi~~~rv~~~~~~~ 668 (811)
+.+||.||+.....++..++..+.-+++.+.-.+|.++.+.. .. +.+-.-+.++ + .+|+.+.++.|
T Consensus 274 ~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r-~-~~~g~v~~W~P 351 (481)
T PLN02554 274 KSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDR-T-KDIGKVIGWAP 351 (481)
T ss_pred CcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHH-h-ccCceEEeeCC
Confidence 458999999888889999999999999999888888764210 00 1111112211 2 36777789999
Q ss_pred hHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHH--HHHhcCCCCccc--------------c
Q 003557 669 KQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGS--LCLATGLGEEMI--------------V 732 (811)
Q Consensus 669 ~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~--~l~~~g~~~~~v--------------~ 732 (811)
+.+.|+- ..+..|| ..+|-+|++||+++|||+|+++- +......+ ++..+|+.- -+ .
T Consensus 352 Q~~iL~H-~~v~~Fv---tH~G~nS~~Ea~~~GVP~l~~P~--~~DQ~~Na~~~v~~~g~Gv-~l~~~~~~~~~~~~~~~ 424 (481)
T PLN02554 352 QVAVLAK-PAIGGFV---THCGWNSILESLWFGVPMAAWPL--YAEQKFNAFEMVEELGLAV-EIRKYWRGDLLAGEMET 424 (481)
T ss_pred HHHHhCC-cccCccc---ccCccchHHHHHHcCCCEEecCc--cccchhhHHHHHHHhCceE-EeeccccccccccccCe
Confidence 8888742 4466665 56778999999999999999873 22222222 345556543 11 1
Q ss_pred CCHHHHHHHHHHHhc-CHHHHHH---HHHHHHhh
Q 003557 733 NSMKEYEERAVSLAL-DRQKLQA---LTNKLKSV 762 (811)
Q Consensus 733 ~~~~~y~~~~~~l~~-d~~~~~~---~~~~~~~~ 762 (811)
-+.++..+.+.++.. |+..++. +++.+++.
T Consensus 425 ~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~a 458 (481)
T PLN02554 425 VTAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVA 458 (481)
T ss_pred EcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 156677766666664 5554444 44444443
|
|
| >PLN02764 glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00098 Score=72.62 Aligned_cols=156 Identities=9% Similarity=0.059 Sum_probs=93.9
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCChh---hHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhc
Q 003557 600 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA---GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS 676 (811)
Q Consensus 600 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~---~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 676 (811)
++.++|.||+....+++.-+.-.+.=|...-.-.+|++..+.. ....+-+-+.++ +...-++..++.|..+.|+-
T Consensus 256 ~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r-~~grG~v~~~W~PQ~~vL~h- 333 (453)
T PLN02764 256 PDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEER-VKGRGVVWGGWVQQPLILSH- 333 (453)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhh-hccCCcEEeCCCCHHHHhcC-
Confidence 3569999999988877765555554455555557888864211 011122222222 11112677899999998843
Q ss_pred CCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHHHH-HhcCCCCccc------cCCHHHHHHHHHHHhcCH
Q 003557 677 SLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLC-LATGLGEEMI------VNSMKEYEERAVSLALDR 749 (811)
Q Consensus 677 ~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l-~~~g~~~~~v------~~~~~~y~~~~~~l~~d~ 749 (811)
..++.|| ..+|-+|++||+++|||+|+++--. -....+..+ ..+|+.- -+ .-+.++..+.+.++..+.
T Consensus 334 ~~v~~Fv---tH~G~nS~~Eal~~GVP~l~~P~~~-DQ~~na~~l~~~~g~gv-~~~~~~~~~~~~e~i~~av~~vm~~~ 408 (453)
T PLN02764 334 PSVGCFV---SHCGFGSMWESLLSDCQIVLVPQLG-DQVLNTRLLSDELKVSV-EVAREETGWFSKESLRDAINSVMKRD 408 (453)
T ss_pred cccCeEE---ecCCchHHHHHHHcCCCEEeCCccc-chHHHHHHHHHHhceEE-EeccccCCccCHHHHHHHHHHHhcCC
Confidence 4466675 5678999999999999999987421 122222333 2344432 11 126778888788888764
Q ss_pred -HHHHHHHHHHHhh
Q 003557 750 -QKLQALTNKLKSV 762 (811)
Q Consensus 750 -~~~~~~~~~~~~~ 762 (811)
+..+.+|++.++.
T Consensus 409 ~~~g~~~r~~a~~~ 422 (453)
T PLN02764 409 SEIGNLVKKNHTKW 422 (453)
T ss_pred chhHHHHHHHHHHH
Confidence 4555666655543
|
|
| >PLN00414 glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0013 Score=72.03 Aligned_cols=151 Identities=9% Similarity=0.056 Sum_probs=92.0
Q ss_pred CCcEEEEecCCCCCCCH-HHHHHHHHHHhhcCCeEEEeecCChh-------hHHHHHHHHHHcCCCCCceEEcCCCChHH
Q 003557 600 EDKFIFACFNQLYKMDP-EIFNTWCNILRRVPNSALWLLRFPAA-------GEMRLRAYAVAQGVQPDQIIFTDVAMKQE 671 (811)
Q Consensus 600 ~~~~~~~~~~~~~K~~~-~~~~~~~~il~~~p~~~l~l~~~~~~-------~~~~l~~~~~~~gi~~~rv~~~~~~~~~~ 671 (811)
++.+||.||+.....++ .+.++... |...-.-.||++..+.. ..+.+.++.+..| +++.++.|+.+
T Consensus 251 ~~sVvyvsfGS~~~~~~~q~~e~a~g-L~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g-----~vv~~w~PQ~~ 324 (446)
T PLN00414 251 PGSVVFCAFGTQFFFEKDQFQEFCLG-MELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRG-----IVWEGWVEQPL 324 (446)
T ss_pred CCceEEEeecccccCCHHHHHHHHHH-HHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCC-----eEEeccCCHHH
Confidence 35699999999888874 45554443 34444456788754211 0123333333222 56778999888
Q ss_pred HHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHHHH-HhcCCCCcccc------CCHHHHHHHHHH
Q 003557 672 HIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLC-LATGLGEEMIV------NSMKEYEERAVS 744 (811)
Q Consensus 672 ~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l-~~~g~~~~~v~------~~~~~y~~~~~~ 744 (811)
.|.- ..++.|| ...|-+|++||+++|||+|+++--. -....+.++ ..+|+.- -+. -+.++..+.+.+
T Consensus 325 vL~h-~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~-dQ~~na~~~~~~~g~g~-~~~~~~~~~~~~~~i~~~v~~ 398 (446)
T PLN00414 325 ILSH-PSVGCFV---NHCGFGSMWESLVSDCQIVFIPQLA-DQVLITRLLTEELEVSV-KVQREDSGWFSKESLRDTVKS 398 (446)
T ss_pred HhcC-CccceEE---ecCchhHHHHHHHcCCCEEecCccc-chHHHHHHHHHHhCeEE-EeccccCCccCHHHHHHHHHH
Confidence 8843 4456675 5677999999999999999987321 122333444 2456643 221 267787777777
Q ss_pred HhcCH-HHHHHHHHHHHhh
Q 003557 745 LALDR-QKLQALTNKLKSV 762 (811)
Q Consensus 745 l~~d~-~~~~~~~~~~~~~ 762 (811)
+..|+ +..+.+|++.++.
T Consensus 399 ~m~~~~e~g~~~r~~a~~~ 417 (446)
T PLN00414 399 VMDKDSEIGNLVKRNHKKL 417 (446)
T ss_pred HhcCChhhHHHHHHHHHHH
Confidence 77654 4555666655443
|
|
| >PLN02167 UDP-glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0023 Score=71.07 Aligned_cols=140 Identities=20% Similarity=0.241 Sum_probs=88.1
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCChhh----HHHHHHHHHHcCCCCCceEEcCCCChHHHHHhc
Q 003557 601 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG----EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS 676 (811)
Q Consensus 601 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~----~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 676 (811)
+.+||.+|+......+..++.++.-|++.+...||.++.+... ...+-+-+.+ .+ .+|..+.++.|+.+.|.-
T Consensus 280 ~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~e-r~-~~rg~v~~w~PQ~~iL~h- 356 (475)
T PLN02167 280 SSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMD-RV-MGRGLVCGWAPQVEILAH- 356 (475)
T ss_pred CceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHH-Hh-ccCeeeeccCCHHHHhcC-
Confidence 4589999998877888888888888999998888988643210 1112111111 12 245566799988887743
Q ss_pred CCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHH--HHHhcCCCCccc---------cCCHHHHHHHHHHH
Q 003557 677 SLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGS--LCLATGLGEEMI---------VNSMKEYEERAVSL 745 (811)
Q Consensus 677 ~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~--~l~~~g~~~~~v---------~~~~~~y~~~~~~l 745 (811)
..++.|| ..+|-+|++||+++|||+|+++-- ......+ ++..+|+.-.+- .-+.++..+.+.++
T Consensus 357 ~~vg~fv---tH~G~nS~~Eal~~GvP~l~~P~~--~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~ 431 (475)
T PLN02167 357 KAIGGFV---SHCGWNSVLESLWFGVPIATWPMY--AEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSL 431 (475)
T ss_pred cccCeEE---eeCCcccHHHHHHcCCCEEecccc--ccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHH
Confidence 3456665 567788999999999999988621 1111112 234445432111 12567777777777
Q ss_pred hcC
Q 003557 746 ALD 748 (811)
Q Consensus 746 ~~d 748 (811)
..+
T Consensus 432 m~~ 434 (475)
T PLN02167 432 MDG 434 (475)
T ss_pred hcC
Confidence 654
|
|
| >PLN00164 glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0025 Score=70.67 Aligned_cols=140 Identities=20% Similarity=0.267 Sum_probs=88.1
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCChh----------hHHHHHHHHHHcCCCCCceEEcCCCChH
Q 003557 601 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA----------GEMRLRAYAVAQGVQPDQIIFTDVAMKQ 670 (811)
Q Consensus 601 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~----------~~~~l~~~~~~~gi~~~rv~~~~~~~~~ 670 (811)
..+||.||+........-++..+.-|++.+.-.||.+..+.. ....+-+-+.+. +....+++.++.|..
T Consensus 272 ~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~g~~v~~w~PQ~ 350 (480)
T PLN00164 272 ASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLER-TKGRGLVWPTWAPQK 350 (480)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHH-hcCCCeEEeecCCHH
Confidence 458999999888888888888888899888888999864321 011121111111 111226777899988
Q ss_pred HHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCccccc--CCccccchhHHHH-HhcCCCCcccc--------CCHHHHH
Q 003557 671 EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLP--LEKMATRVAGSLC-LATGLGEEMIV--------NSMKEYE 739 (811)
Q Consensus 671 ~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~--g~~~~~r~~~~~l-~~~g~~~~~v~--------~~~~~y~ 739 (811)
+.|.- ..+-.|| ..+|-+|++||+++|||+|+++ ++.+. .+..+ ..+|+.- .+. -+.++..
T Consensus 351 ~iL~h-~~vg~fv---tH~GwnS~~Eai~~GVP~l~~P~~~DQ~~---Na~~~~~~~gvG~-~~~~~~~~~~~~~~e~l~ 422 (480)
T PLN00164 351 EILAH-AAVGGFV---THCGWNSVLESLWHGVPMAPWPLYAEQHL---NAFELVADMGVAV-AMKVDRKRDNFVEAAELE 422 (480)
T ss_pred HHhcC-cccCeEE---eecccchHHHHHHcCCCEEeCCccccchh---HHHHHHHHhCeEE-EeccccccCCcCcHHHHH
Confidence 88843 2233554 5677899999999999999886 22221 12222 4456543 221 1567777
Q ss_pred HHHHHHhcCH
Q 003557 740 ERAVSLALDR 749 (811)
Q Consensus 740 ~~~~~l~~d~ 749 (811)
+.+.++..++
T Consensus 423 ~av~~vm~~~ 432 (480)
T PLN00164 423 RAVRSLMGGG 432 (480)
T ss_pred HHHHHHhcCC
Confidence 7777777664
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.50 E-value=9.7e-05 Score=48.09 Aligned_cols=32 Identities=47% Similarity=0.662 Sum_probs=19.6
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHH
Q 003557 284 YIRAITIRPTMAEAHANLASAYKDSGHVEAAI 315 (811)
Q Consensus 284 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 315 (811)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45566666666666666666666666666554
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.023 Score=54.97 Aligned_cols=200 Identities=9% Similarity=0.072 Sum_probs=132.8
Q ss_pred CChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHH-cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHH-HHHHHH
Q 003557 106 GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYE-RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD-EAIQCY 182 (811)
Q Consensus 106 g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~ 182 (811)
.....|+.+...++..+|. -.+|...-.++.. ..+..+-++++.+.++.+|.+..+|...-.+....|++. .-++..
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~ 136 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFT 136 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHH
Confidence 3345566666667777776 3333333333332 335667778888888888888888888888888888877 778888
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHH-c-----CCHHHHHHHHHHHHhc
Q 003557 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ-Q-----GNYADAISCYNEVLRI 256 (811)
Q Consensus 183 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~-----g~~~~A~~~~~~al~~ 256 (811)
+.++..+.++-.+|...-.+....+.++.-+.+..++++.+-.+-.+|+..-.+... . -..+.-+.+..+.+..
T Consensus 137 ~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~ 216 (318)
T KOG0530|consen 137 KLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILL 216 (318)
T ss_pred HHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHh
Confidence 888888888888888888888888888888888888888776666665543222111 1 1234556677778888
Q ss_pred CCCCHHHHHHHHHHHHH-hC--CHHHHHHHHHHHH-hcCCCcHHHHHHHHHHH
Q 003557 257 DPLAADGLVNRGNTYKE-IG--RVTDAIQDYIRAI-TIRPTMAEAHANLASAY 305 (811)
Q Consensus 257 ~p~~~~~~~~la~~~~~-~g--~~~~A~~~~~~al-~~~p~~~~~~~~la~~~ 305 (811)
.|++..+|..+.-++.. .| ...+-.......+ +.....+..+.-+..+|
T Consensus 217 vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 217 VPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred CCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 88888888888887775 44 2334444444443 33334455555555555
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.028 Score=54.36 Aligned_cols=170 Identities=15% Similarity=0.186 Sum_probs=115.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH-HHHH
Q 003557 36 AQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG-DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ-EAIM 113 (811)
Q Consensus 36 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~ 113 (811)
+...-..|+++-..++.++|.+..+|...-.++..++ +..+-++++.+.++-+|.+-.+|...-.+....|+.. .-++
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence 3344566777777888888888777777666665554 5667778888888888888888887777777777776 6677
Q ss_pred HHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHH
Q 003557 114 CYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKD-VG-----RVDEAIQCYNQCL 186 (811)
Q Consensus 114 ~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g-----~~~~A~~~~~~al 186 (811)
+.+.++..+.. -.+|...-.+....+.++.-+.+..++++.+-.+-.+|+..-.+... .| ..+.-+.+..+.+
T Consensus 135 f~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I 214 (318)
T KOG0530|consen 135 FTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKI 214 (318)
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHH
Confidence 77777776554 66666666777777778888888888877665555555443222111 11 2234455666677
Q ss_pred hcCCCChHHHHHHHHHHHH
Q 003557 187 SLQPSHPQALTNLGNIYME 205 (811)
Q Consensus 187 ~~~p~~~~~~~~la~~~~~ 205 (811)
...|++..+|..|..++..
T Consensus 215 ~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 215 LLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HhCCCCccHHHHHHHHHHh
Confidence 7777777777777766664
|
|
| >PLN02562 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0047 Score=67.98 Aligned_cols=145 Identities=14% Similarity=0.127 Sum_probs=93.3
Q ss_pred CcEEEEecCCCC-CCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCC
Q 003557 601 DKFIFACFNQLY-KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 679 (811)
Q Consensus 601 ~~~~~~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~ 679 (811)
+.+||.+|+... ...++.++..+.-+++.+.-.+|.+..+. ...+-+-+.+. + ++|+.+.++.|+.+.|.- ..+
T Consensus 273 ~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~--~~~l~~~~~~~-~-~~~~~v~~w~PQ~~iL~h-~~v 347 (448)
T PLN02562 273 NSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVW--REGLPPGYVER-V-SKQGKVVSWAPQLEVLKH-QAV 347 (448)
T ss_pred CceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCc--hhhCCHHHHHH-h-ccCEEEEecCCHHHHhCC-Ccc
Confidence 458888998764 77899999999999999998888875421 11122112221 3 467888899998888843 333
Q ss_pred cEEecCCCCCChhHHHHHHHhCCCccccc--CCccccchhHHHHH-hcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHH
Q 003557 680 DLFLDTPLCNAHTTGTDILWAGLPMITLP--LEKMATRVAGSLCL-ATGLGEEMIVNSMKEYEERAVSLALDRQKLQALT 756 (811)
Q Consensus 680 Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~--g~~~~~r~~~~~l~-~~g~~~~~v~~~~~~y~~~~~~l~~d~~~~~~~~ 756 (811)
-.|| ..+|-+|++||+++|||+|+++ ++.+. -+..+. .+|+.-.+-.-+.++..+.+.++..|++.++..+
T Consensus 348 ~~fv---tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~---na~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~~~~~r~~a~ 421 (448)
T PLN02562 348 GCYL---THCGWNSTMEAIQCQKRLLCYPVAGDQFV---NCAYIVDVWKIGVRISGFGQKEVEEGLRKVMEDSGMGERLM 421 (448)
T ss_pred ceEE---ecCcchhHHHHHHcCCCEEeCCcccchHH---HHHHHHHHhCceeEeCCCCHHHHHHHHHHHhCCHHHHHHHH
Confidence 4564 5777999999999999999886 22221 112221 1233221112367787777777777877665544
|
|
| >PLN02448 UDP-glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0046 Score=68.54 Aligned_cols=135 Identities=16% Similarity=0.185 Sum_probs=87.0
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCc
Q 003557 601 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 680 (811)
Q Consensus 601 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~D 680 (811)
..+||.+|+......+..++....-++..+.-.+|.+.... ..+.+. . .+++++.++.|..+.|.- ..+.
T Consensus 274 ~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~---~~~~~~-----~-~~~~~v~~w~pQ~~iL~h-~~v~ 343 (459)
T PLN02448 274 GSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEA---SRLKEI-----C-GDMGLVVPWCDQLKVLCH-SSVG 343 (459)
T ss_pred CceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCch---hhHhHh-----c-cCCEEEeccCCHHHHhcc-Cccc
Confidence 45888899888788888888888888888877777554321 112111 1 357788899998888853 3334
Q ss_pred EEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHHHHHh-cCCCCccc-------cCCHHHHHHHHHHHhcCH
Q 003557 681 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLA-TGLGEEMI-------VNSMKEYEERAVSLALDR 749 (811)
Q Consensus 681 v~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~-~g~~~~~v-------~~~~~~y~~~~~~l~~d~ 749 (811)
.|| ..+|.+|++||+++|||+|+++-..=. ...+..+.. +|+.-.+. .-+.++..+.+.++..|+
T Consensus 344 ~fv---tHgG~nS~~eal~~GvP~l~~P~~~DQ-~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~ 416 (459)
T PLN02448 344 GFW---THCGWNSTLEAVFAGVPMLTFPLFWDQ-PLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLE 416 (459)
T ss_pred eEE---ecCchhHHHHHHHcCCCEEeccccccc-hhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCC
Confidence 465 567799999999999999998732111 112223322 23322111 126678777788887764
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.2 Score=52.63 Aligned_cols=129 Identities=11% Similarity=-0.099 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 003557 25 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA-----IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLG 99 (811)
Q Consensus 25 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 99 (811)
..+...|.++.+++++.+|...|.++.+...+.+ +.+..+....+-+++.+.-...+...-+..|..+....-.+
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~ 86 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKA 86 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3456678899999999999999999987655442 33444444445567778777777777778888888888889
Q ss_pred HHHHHcCChHHHHHHHHHHHhhC----C-----C-------hhHHHhHHHHHHHcCCHHHHHHHHHHHHH
Q 003557 100 NVYKALGMPQEAIMCYQRAVQTR----P-----N-------AIAFGNLASTYYERGQADMAILYYKQAIG 153 (811)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al~~~----p-----~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 153 (811)
...++.+.+.+|++.+......- + + ...-...+.++...|.+.++...+++.+.
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE 156 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 99999999999999887665531 1 1 11223457889999999999999998874
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PLN02207 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0033 Score=69.06 Aligned_cols=103 Identities=18% Similarity=0.319 Sum_probs=75.6
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCChh-hHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCC
Q 003557 600 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA-GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 678 (811)
Q Consensus 600 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~-~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 678 (811)
++.+||.||+.........++..+.-+...+...||.+..... ..+.+-+-+.+. + .+|+...++.|+.+.|+- ..
T Consensus 274 ~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~~~~~lp~~f~er-~-~~~g~i~~W~PQ~~IL~H-~~ 350 (468)
T PLN02207 274 EASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDR-V-SGRGMICGWSPQVEILAH-KA 350 (468)
T ss_pred CCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCccccccCCHHHHhh-c-CCCeEEEEeCCHHHHhcc-cc
Confidence 3569999999988999999999999999999999998874221 011111222221 3 467677799999998853 34
Q ss_pred CcEEecCCCCCChhHHHHHHHhCCCccccc
Q 003557 679 ADLFLDTPLCNAHTTGTDILWAGLPMITLP 708 (811)
Q Consensus 679 ~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~ 708 (811)
+..|| ...|-++++||+++|||+|+++
T Consensus 351 vg~Fv---TH~GwnS~~Eai~~GVP~l~~P 377 (468)
T PLN02207 351 VGGFV---SHCGWNSIVESLWFGVPIVTWP 377 (468)
T ss_pred cceee---ecCccccHHHHHHcCCCEEecC
Confidence 55565 5677889999999999999886
|
|
| >PLN03007 UDP-glucosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0038 Score=69.63 Aligned_cols=104 Identities=18% Similarity=0.192 Sum_probs=70.6
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCChhh---HHHHHHHHHHcCCCCCceEEcCCCChHHHHHhc
Q 003557 600 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG---EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS 676 (811)
Q Consensus 600 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~---~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 676 (811)
+..+||.||+........-+...+.-+...+...||.++.+... ...+-+-+.+.-. ..+|+..++.|..+.|.-
T Consensus 284 ~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~-~~g~~v~~w~PQ~~iL~h- 361 (482)
T PLN03007 284 PDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTK-GKGLIIRGWAPQVLILDH- 361 (482)
T ss_pred CCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhc-cCCEEEecCCCHHHHhcc-
Confidence 35689999998877766666666666788888888988753110 1112222222222 456888899998887733
Q ss_pred CCCcEEecCCCCCChhHHHHHHHhCCCccccc
Q 003557 677 SLADLFLDTPLCNAHTTGTDILWAGLPMITLP 708 (811)
Q Consensus 677 ~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~ 708 (811)
..+..|| ..+|-+|++||+++|||+|+++
T Consensus 362 ~~v~~fv---tH~G~nS~~Eal~~GVP~v~~P 390 (482)
T PLN03007 362 QATGGFV---THCGWNSLLEGVAAGLPMVTWP 390 (482)
T ss_pred Cccceee---ecCcchHHHHHHHcCCCeeecc
Confidence 2234465 5677899999999999999886
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.16 Score=57.80 Aligned_cols=263 Identities=16% Similarity=0.023 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------hhHHHh
Q 003557 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF-PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN------AIAFGN 130 (811)
Q Consensus 58 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~ 130 (811)
.+.+..-+..+...|...+|+...-.+- +|.. .+.....+.-+...++. ..+..+++.-|. +.....
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~--d~~~aa~lle~~~~~L~~~~~l----sll~~~~~~lP~~~l~~~P~Lvll 420 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAG--DPEMAADLLEQLEWQLFNGSEL----SLLLAWLKALPAELLASTPRLVLL 420 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCC--CHHHHHHHHHhhhhhhhcccch----HHHHHHHHhCCHHHHhhCchHHHH
Confidence 4556666666667777777766544331 1111 01111222222233322 222233333332 334445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-----HHH
Q 003557 131 LASTYYERGQADMAILYYKQAIGCDPR---------FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP-----QAL 196 (811)
Q Consensus 131 la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~ 196 (811)
.+.......++.+|..+..++...-+. ..+..-..+.+....|++++|+++.+.++..-|.+. .++
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 566677788888888888887644332 122344456777888999999999999988776643 467
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhccCCCc------hHHHHHHHHHHHcCC--HHHHHHHHHHHH----hcCCCCHHHH
Q 003557 197 TNLGNIYMEWNMLPAAASYYKATLAVTTGLS------APFNNLAVIYKQQGN--YADAISCYNEVL----RIDPLAADGL 264 (811)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~------~~~~~la~~~~~~g~--~~~A~~~~~~al----~~~p~~~~~~ 264 (811)
..++.+..-.|++++|..+...+.+...... .+....+.++..+|+ +.+....+...- ...|......
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~ 580 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLV 580 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHH
Confidence 7788888889999999998888877643322 223344677778883 333333333322 2233333333
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc----CCCc--HH-HHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 003557 265 VNRGNTYKEIGRVTDAIQDYIRAITI----RPTM--AE-AHANLASAYKDSGHVEAAIKSYKQALLLRP 326 (811)
Q Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~----~p~~--~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p 326 (811)
...+.++...-+++.+.....+.++. .|.. .. +++.|+.++...|+.++|...+.+...+.-
T Consensus 581 ~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 581 RIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 33344433333355555555555544 2322 22 235789999999999999999888876643
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.14 Score=56.13 Aligned_cols=156 Identities=17% Similarity=0.128 Sum_probs=83.1
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHh
Q 003557 17 LALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW----------SNLAGLFMESGDLNRALQYYKEAVK 86 (811)
Q Consensus 17 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~~~~g~~~~A~~~~~~al~ 86 (811)
++.+| ++..|..++......-.++.|...|-+.-.. +.- ..- ...+.+-.--|++++|.+.|-.+-+
T Consensus 686 iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gi-k~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~dr 762 (1189)
T KOG2041|consen 686 IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGI-KLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADR 762 (1189)
T ss_pred HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cch-hHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccch
Confidence 44455 5788889998888887888887777654221 110 011 1233344445778888777765422
Q ss_pred cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---hhHHHhHHHHHHHcCCHHHHHHHHHHHH-----------
Q 003557 87 LKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN---AIAFGNLASTYYERGQADMAILYYKQAI----------- 152 (811)
Q Consensus 87 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~la~~~~~~g~~~~A~~~~~~al----------- 152 (811)
.+ .-..++.+.|+|-...++++..-.-..+ ..++.++|..+.....|++|.++|.+.-
T Consensus 763 rD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~ 834 (1189)
T KOG2041|consen 763 RD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYR 834 (1189)
T ss_pred hh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHH
Confidence 21 1123344555555544444432211111 4566666666666666666666665431
Q ss_pred -----------HcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003557 153 -----------GCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 183 (811)
Q Consensus 153 -----------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 183 (811)
..-|++.+.+-.+|..+...|.-++|.+.|-
T Consensus 835 le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 835 LELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 1234444445555555555555555555543
|
|
| >PLN02210 UDP-glucosyl transferase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0038 Score=68.76 Aligned_cols=141 Identities=12% Similarity=0.182 Sum_probs=90.8
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCc
Q 003557 601 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 680 (811)
Q Consensus 601 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~D 680 (811)
..+||.||+...+..+..++..+.-++..+.-.+|.++.... .... ..+.+..- .+|.+..++.|+.+.|.- ..+.
T Consensus 269 ~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~-~~~~-~~~~~~~~-~~~g~v~~w~PQ~~iL~h-~~vg 344 (456)
T PLN02210 269 SSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEK-AQNV-QVLQEMVK-EGQGVVLEWSPQEKILSH-MAIS 344 (456)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCcc-ccch-hhHHhhcc-CCCeEEEecCCHHHHhcC-cCcC
Confidence 458999999988999999999999999999888888864211 1111 11222211 245556789998887743 3345
Q ss_pred EEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHHHHHh-cCCCCcccc-------CCHHHHHHHHHHHhcCHH
Q 003557 681 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLA-TGLGEEMIV-------NSMKEYEERAVSLALDRQ 750 (811)
Q Consensus 681 v~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~-~g~~~~~v~-------~~~~~y~~~~~~l~~d~~ 750 (811)
.|| ..+|-+|++||++.|||+|+++--. --.+.+..+.. +|+.- .+. -+.++..+.+.++..+++
T Consensus 345 ~Fi---tH~G~nS~~Eai~~GVP~v~~P~~~-DQ~~na~~~~~~~g~G~-~l~~~~~~~~~~~~~l~~av~~~m~~~~ 417 (456)
T PLN02210 345 CFV---THCGWNSTIETVVAGVPVVAYPSWT-DQPIDARLLVDVFGIGV-RMRNDAVDGELKVEEVERCIEAVTEGPA 417 (456)
T ss_pred eEE---eeCCcccHHHHHHcCCCEEeccccc-ccHHHHHHHHHHhCeEE-EEeccccCCcCCHHHHHHHHHHHhcCch
Confidence 665 5677889999999999999987321 11122334433 45443 221 256777777777776643
|
|
| >PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00095 Score=75.64 Aligned_cols=164 Identities=13% Similarity=0.224 Sum_probs=93.5
Q ss_pred CCcEEEEecCCCCCC-CHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCC
Q 003557 600 EDKFIFACFNQLYKM-DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 678 (811)
Q Consensus 600 ~~~~~~~~~~~~~K~-~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 678 (811)
++.+||.+|+...+. ..+.++...+.+++.|...+|-...... . .+ ++++.+..+.|+.+.|+ ...
T Consensus 275 ~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~--~---------~l-~~n~~~~~W~PQ~~lL~-hp~ 341 (500)
T PF00201_consen 275 KKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEPP--E---------NL-PKNVLIVKWLPQNDLLA-HPR 341 (500)
T ss_dssp TTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSHG--C---------HH-HTTEEEESS--HHHHHT-STT
T ss_pred CCCEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccccccc--c---------cc-cceEEEeccccchhhhh-ccc
Confidence 356899999987654 4445888999999999988887654211 1 12 46788889999988885 345
Q ss_pred CcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHH
Q 003557 679 ADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQAL 755 (811)
Q Consensus 679 ~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~---~~~~~y~~~~~~l~~d~~~~~~~ 755 (811)
+++|+ ..+|-+|+.||+++|||+|+++--.=. ..-+..+...|... .+. -+.++..+++.++.+|+..++..
T Consensus 342 v~~fi---tHgG~~s~~Ea~~~gvP~l~~P~~~DQ-~~na~~~~~~G~g~-~l~~~~~~~~~l~~ai~~vl~~~~y~~~a 416 (500)
T PF00201_consen 342 VKLFI---THGGLNSTQEALYHGVPMLGIPLFGDQ-PRNAARVEEKGVGV-VLDKNDLTEEELRAAIREVLENPSYKENA 416 (500)
T ss_dssp EEEEE---ES--HHHHHHHHHCT--EEE-GCSTTH-HHHHHHHHHTTSEE-EEGGGC-SHHHHHHHHHHHHHSHHHHHHH
T ss_pred ceeee---eccccchhhhhhhccCCccCCCCcccC-CccceEEEEEeeEE-EEEecCCcHHHHHHHHHHHHhhhHHHHHH
Confidence 67775 577799999999999999988632111 11234455667754 222 26788999999999999877665
Q ss_pred HHHHHhhcccCCCCChHHHHHHHHHHH
Q 003557 756 TNKLKSVRLTCPLFDTARWVKNLERSY 782 (811)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~e~~y 782 (811)
++ +.......|.=-.++.+..+|-+.
T Consensus 417 ~~-ls~~~~~~p~~p~~~~~~~ie~v~ 442 (500)
T PF00201_consen 417 KR-LSSLFRDRPISPLERAVWWIEYVA 442 (500)
T ss_dssp HH-HHHTTT------------------
T ss_pred HH-HHHHHhcCCCCHHHHHHHHHHHHH
Confidence 54 333333334333444455555443
|
This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A .... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.13 Score=52.97 Aligned_cols=121 Identities=17% Similarity=0.126 Sum_probs=82.2
Q ss_pred CCCCHHHHHHHHHHHHhhC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CCC----------cH
Q 003557 2 RKGRLNEAAQCCRQALALN----PLL----VDAHSNLGNLMKAQG-LVQEAYSCYLEALRI----QPT----------FA 58 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~----p~~----~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~----~p~----------~~ 58 (811)
++|+++.|..++.++-... |+. ...++..|......+ ++++|...++++.+. .+. ..
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 5788999999998885533 332 346677777788888 888888888888775 211 13
Q ss_pred HHHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 003557 59 IAWSNLAGLFMESGDLN---RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 122 (811)
Q Consensus 59 ~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 122 (811)
.++..++.+|...+.++ +|..+.+.+-...|+.+..+.....+..+.++.+++.+.+.+++..-
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 45667777777766543 45555555555667767766666666666777777777777777653
|
It is also involved in sporulation []. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.36 Score=55.21 Aligned_cols=293 Identities=16% Similarity=0.053 Sum_probs=179.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCHHHHH
Q 003557 23 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF-AIAWSNLAGLFMESGDLNRALQYYKEAVKLKP-----TFPDAYL 96 (811)
Q Consensus 23 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~ 96 (811)
-.+.+..-+..+...|...+|+...-.+ .+|.- .......+.-....++.. .+..+++.-| +++....
T Consensus 346 ~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~l~~~P~Lvl 419 (894)
T COG2909 346 LKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAELLASTPRLVL 419 (894)
T ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHHHhhCchHHH
Confidence 3667777788888899999998876543 22322 122222233334444433 3333333333 3455666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCC----------hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----HHH
Q 003557 97 NLGNVYKALGMPQEAIMCYQRAVQTRPN----------AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF-----LEA 161 (811)
Q Consensus 97 ~la~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~ 161 (811)
..+.......++.+|..+..++...-+. .+.....+.+....|+.++|+++.+.++..-|.+ ..+
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~ 499 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVA 499 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence 7778888889999999888887664221 3344455777888999999999999999776654 336
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----Ch--HHHHHHHHHHHHcCChH--HHHHHHHHHHh----ccCCCchH
Q 003557 162 YNNLGNALKDVGRVDEAIQCYNQCLSLQPS----HP--QALTNLGNIYMEWNMLP--AAASYYKATLA----VTTGLSAP 229 (811)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~--~~~~~la~~~~~~g~~~--~A~~~~~~~l~----~~~~~~~~ 229 (811)
+..++.+..-.|++++|..+...+.+.... .- -+....+.++..+|+.. +....+...-. ..|.....
T Consensus 500 ~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~ 579 (894)
T COG2909 500 LSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFL 579 (894)
T ss_pred hhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhH
Confidence 778888999999999999999888776322 11 23445577788888433 33333333222 22333333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCC--HH-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-----HH-
Q 003557 230 FNNLAVIYKQQGNYADAISCYNEVLRID----PLA--AD-GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM-----AE- 296 (811)
Q Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~--~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~- 296 (811)
....+.++...-+++.+.....+.++.. |.. .. .++.++.++...|++++|...+.+....-.+. ..
T Consensus 580 ~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a 659 (894)
T COG2909 580 VRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLA 659 (894)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence 3333333333333666655555555442 222 22 33588999999999999999988877652221 11
Q ss_pred -HHHHHHHHHHhCCCHHHHHHHHHHH
Q 003557 297 -AHANLASAYKDSGHVEAAIKSYKQA 321 (811)
Q Consensus 297 -~~~~la~~~~~~g~~~~A~~~~~~a 321 (811)
++..........|+.++|.....+.
T Consensus 660 ~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 660 AAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 1222233445678999888887773
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00021 Score=74.91 Aligned_cols=106 Identities=25% Similarity=0.328 Sum_probs=79.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 003557 28 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM 107 (811)
Q Consensus 28 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 107 (811)
-..+...+..+.++.|+..|.++++++|+++..+.+.+.++.+.+++..|+.-+.++++.+|....+|+..|.+....+.
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 34456666777788888888888888888777777777777888888888888888888888777788888888888888
Q ss_pred hHHHHHHHHHHHhhCCC-hhHHHhHHH
Q 003557 108 PQEAIMCYQRAVQTRPN-AIAFGNLAS 133 (811)
Q Consensus 108 ~~~A~~~~~~al~~~p~-~~~~~~la~ 133 (811)
+.+|...|+......|+ ..+...+..
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHH
Confidence 88888888888777777 444444433
|
|
| >PLN02208 glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0023 Score=69.99 Aligned_cols=152 Identities=11% Similarity=0.092 Sum_probs=91.6
Q ss_pred CCcEEEEecCCCCCCCHH-HHHHHHHH-HhhcCCeEEEeecCChh---hHHHHHHHHHHcCCCCCceEEcCCCChHHHHH
Q 003557 600 EDKFIFACFNQLYKMDPE-IFNTWCNI-LRRVPNSALWLLRFPAA---GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIR 674 (811)
Q Consensus 600 ~~~~~~~~~~~~~K~~~~-~~~~~~~i-l~~~p~~~l~l~~~~~~---~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 674 (811)
++.+||.||+...+..+. +.++...+ ....|. +|++..+.. ....+-+-+.++ +....+++.++.|+.+.|+
T Consensus 250 ~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf--~wv~r~~~~~~~~~~~lp~~f~~r-~~~~g~~v~~W~PQ~~iL~ 326 (442)
T PLN02208 250 PKSVVFCSLGSQIILEKDQFQELCLGMELTGLPF--LIAVKPPRGSSTVQEGLPEGFEER-VKGRGVVWGGWVQQPLILD 326 (442)
T ss_pred CCcEEEEeccccccCCHHHHHHHHHHHHhCCCcE--EEEEeCCCcccchhhhCCHHHHHH-HhcCCcEeeccCCHHHHhc
Confidence 356999999998887777 77776665 667775 566653211 011121112211 1123467789999999884
Q ss_pred hcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccch-hHHHHHh-cCCCCcccc------CCHHHHHHHHHHHh
Q 003557 675 RSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRV-AGSLCLA-TGLGEEMIV------NSMKEYEERAVSLA 746 (811)
Q Consensus 675 ~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~-~~~~l~~-~g~~~~~v~------~~~~~y~~~~~~l~ 746 (811)
- ..+..|| ...|-++++||+++|||+|+++- +.... .+.++.. +|+.- -+. -+.++..+.+.++.
T Consensus 327 H-~~v~~Fv---tHcG~nS~~Eai~~GVP~l~~P~--~~DQ~~na~~~~~~~g~gv-~~~~~~~~~~~~~~l~~ai~~~m 399 (442)
T PLN02208 327 H-PSIGCFV---NHCGPGTIWESLVSDCQMVLIPF--LSDQVLFTRLMTEEFEVSV-EVSREKTGWFSKESLSNAIKSVM 399 (442)
T ss_pred C-CccCeEE---ccCCchHHHHHHHcCCCEEecCc--chhhHHHHHHHHHHhceeE-EeccccCCcCcHHHHHHHHHHHh
Confidence 3 4445665 56779999999999999999863 22221 2233232 56553 221 25677777777777
Q ss_pred cCH-HHHHHHHHHHHh
Q 003557 747 LDR-QKLQALTNKLKS 761 (811)
Q Consensus 747 ~d~-~~~~~~~~~~~~ 761 (811)
.++ +..+++|++.++
T Consensus 400 ~~~~e~g~~~r~~~~~ 415 (442)
T PLN02208 400 DKDSDLGKLVRSNHTK 415 (442)
T ss_pred cCCchhHHHHHHHHHH
Confidence 665 445566665543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.007 Score=66.97 Aligned_cols=118 Identities=19% Similarity=0.162 Sum_probs=89.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----hhHHHhHHHHHHHcCCHHHHH
Q 003557 71 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-----AIAFGNLASTYYERGQADMAI 145 (811)
Q Consensus 71 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~la~~~~~~g~~~~A~ 145 (811)
..+.+.|.+.++...+..|+..-..+..|.++...|+.++|++.|++++..... ...++.++.++..+.+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 446778888888888888888888888888888888888888888877753322 456778888888888888888
Q ss_pred HHHHHHHHcCCCcHH-HHHHHHHHHHHcCCH-------HHHHHHHHHHHhc
Q 003557 146 LYYKQAIGCDPRFLE-AYNNLGNALKDVGRV-------DEAIQCYNQCLSL 188 (811)
Q Consensus 146 ~~~~~al~~~p~~~~-~~~~la~~~~~~g~~-------~~A~~~~~~al~~ 188 (811)
.++.++.+.+..... ..+..|.++...++. ++|.++++++-..
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 888888876655433 345567777888887 8888888877654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PLN02173 UDP-glucosyl transferase family protein | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0019 Score=70.59 Aligned_cols=139 Identities=14% Similarity=0.220 Sum_probs=87.6
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCc
Q 003557 601 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 680 (811)
Q Consensus 601 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~D 680 (811)
+.+||.+|+......++.++..+.-|...| .+|.+..+. ...+-+-+.+. +..+++.+.++.|+.+.|.- ..+.
T Consensus 264 ~svvyvsfGS~~~~~~~~~~ela~gLs~~~--flWvvr~~~--~~~lp~~~~~~-~~~~~~~i~~W~PQ~~iL~H-~~v~ 337 (449)
T PLN02173 264 GSVVYIAFGSMAKLSSEQMEEIASAISNFS--YLWVVRASE--ESKLPPGFLET-VDKDKSLVLKWSPQLQVLSN-KAIG 337 (449)
T ss_pred CceEEEEecccccCCHHHHHHHHHHhcCCC--EEEEEeccc--hhcccchHHHh-hcCCceEEeCCCCHHHHhCC-Cccc
Confidence 458999999888899998888888886666 678875321 11121112221 22467888899998887742 3345
Q ss_pred EEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHHHHHh-cCCCCcccc------CCHHHHHHHHHHHhcCH
Q 003557 681 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLA-TGLGEEMIV------NSMKEYEERAVSLALDR 749 (811)
Q Consensus 681 v~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~-~g~~~~~v~------~~~~~y~~~~~~l~~d~ 749 (811)
.|| ...|.+|++||+++|||+|+++--. -....+..+.. +|+.-.+.. -+.++..+.+.++..++
T Consensus 338 ~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~-DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~ 409 (449)
T PLN02173 338 CFM---THCGWNSTMEGLSLGVPMVAMPQWT-DQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGE 409 (449)
T ss_pred eEE---ecCccchHHHHHHcCCCEEecCchh-cchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCC
Confidence 665 5677999999999999999987221 12222333332 133210110 15677777777777664
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.014 Score=57.94 Aligned_cols=159 Identities=18% Similarity=0.156 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHH--hHHHHH
Q 003557 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFG--NLASTY 135 (811)
Q Consensus 58 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~la~~~ 135 (811)
.+.-..-+.-....|++.+|...|..++...|++.++...++.+|...|+.+.|...+...-....+..... .....+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 344555666778899999999999999999999999999999999999999999988876533332211111 112233
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCChHHHH
Q 003557 136 YERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP--SHPQALTNLGNIYMEWNMLPAAA 213 (811)
Q Consensus 136 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~ 213 (811)
.+.....+. ..+++.+..+|++.++-+.++..+...|+.++|.+.+-..++.+. ++..+...+..++...|.-+.+.
T Consensus 214 ~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 214 EQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred HHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 333332222 234455667899999999999999999999999999888887654 34556666666666666544444
Q ss_pred HHHH
Q 003557 214 SYYK 217 (811)
Q Consensus 214 ~~~~ 217 (811)
..++
T Consensus 293 ~~~R 296 (304)
T COG3118 293 LAYR 296 (304)
T ss_pred HHHH
Confidence 4443
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0098 Score=63.58 Aligned_cols=104 Identities=17% Similarity=0.214 Sum_probs=91.9
Q ss_pred HHHcCChHHHHHHHHHHHhccCCCc-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHH
Q 003557 203 YMEWNMLPAAASYYKATLAVTTGLS-APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAI 281 (811)
Q Consensus 203 ~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 281 (811)
+...|+...|.+++..++...|... ....+|+.++.+.|-...|-.++.+++.++...+-.++.+|.++..+.+.+.|+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 3457899999999999998887654 457789999999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHH
Q 003557 282 QDYIRAITIRPTMAEAHANLASAYK 306 (811)
Q Consensus 282 ~~~~~al~~~p~~~~~~~~la~~~~ 306 (811)
+.|+++++.+|+++.....|-.+-+
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999988777665544
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00027 Score=74.08 Aligned_cols=102 Identities=24% Similarity=0.296 Sum_probs=93.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCH
Q 003557 232 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHV 311 (811)
Q Consensus 232 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 311 (811)
.-+...+..+.++.|+..|.++++++|+.+..+.+.+..+.+.+++..|+..+.++++.+|....+|+..|.+....+++
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 44566677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChHHHH
Q 003557 312 EAAIKSYKQALLLRPDFPEATC 333 (811)
Q Consensus 312 ~~A~~~~~~al~~~p~~~~~~~ 333 (811)
.+|...|++...+.|+.+.+..
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r 110 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATR 110 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHH
Confidence 9999999999999999887654
|
|
| >PLN02152 indole-3-acetate beta-glucosyltransferase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0058 Score=66.95 Aligned_cols=141 Identities=13% Similarity=0.188 Sum_probs=90.3
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCChh--------hHHHH--HHHHHHcCCCCCceEEcCCCChH
Q 003557 601 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA--------GEMRL--RAYAVAQGVQPDQIIFTDVAMKQ 670 (811)
Q Consensus 601 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~--------~~~~l--~~~~~~~gi~~~rv~~~~~~~~~ 670 (811)
+.+||.||+....+....++..+.-+.+.|...||.+..+.. ....+ -+-+.+. + .+|..+.++.|..
T Consensus 261 ~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~-~-~~~g~v~~W~PQ~ 338 (455)
T PLN02152 261 SSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHE-L-EEVGMIVSWCSQI 338 (455)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHh-c-cCCeEEEeeCCHH
Confidence 469999999999999999999999999999999998864211 00011 1112221 3 4677777999988
Q ss_pred HHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHHHHHh---cCCCCccc----cCCHHHHHHHHH
Q 003557 671 EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLA---TGLGEEMI----VNSMKEYEERAV 743 (811)
Q Consensus 671 ~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~---~g~~~~~v----~~~~~~y~~~~~ 743 (811)
+.|.- ..+-.|+ ..+|.+|++||+++|||+|+++--. -....+..+.. +|+.- .. .-+.++..+.+.
T Consensus 339 ~iL~h-~~vg~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~-DQ~~na~~~~~~~~~G~~~-~~~~~~~~~~e~l~~av~ 412 (455)
T PLN02152 339 EVLRH-RAVGCFV---THCGWSSSLESLVLGVPVVAFPMWS-DQPANAKLLEEIWKTGVRV-RENSEGLVERGEIRRCLE 412 (455)
T ss_pred HHhCC-cccceEE---eeCCcccHHHHHHcCCCEEeccccc-cchHHHHHHHHHhCceEEe-ecCcCCcCcHHHHHHHHH
Confidence 87732 2233454 5677899999999999999886311 11122223322 34321 11 125677777777
Q ss_pred HHhcCH
Q 003557 744 SLALDR 749 (811)
Q Consensus 744 ~l~~d~ 749 (811)
++..|+
T Consensus 413 ~vm~~~ 418 (455)
T PLN02152 413 AVMEEK 418 (455)
T ss_pred HHHhhh
Confidence 777654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.17 Score=52.10 Aligned_cols=62 Identities=13% Similarity=-0.049 Sum_probs=30.7
Q ss_pred HHHhHHHHHHHcCCHH---HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003557 127 AFGNLASTYYERGQAD---MAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 188 (811)
Q Consensus 127 ~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 188 (811)
++..++.+|...+.++ +|..+.+.+.+..|+.+..+.....++.+.++.+++.+.+.+++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3444555555544433 2333444444445555555544444444455566666666665554
|
It is also involved in sporulation []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00023 Score=46.31 Aligned_cols=21 Identities=43% Similarity=0.801 Sum_probs=7.4
Q ss_pred hCCCcHHHHHHHHHHHHHcCC
Q 003557 53 IQPTFAIAWSNLAGLFMESGD 73 (811)
Q Consensus 53 ~~p~~~~~~~~la~~~~~~g~ 73 (811)
.+|+++.+|+.+|.+|...|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~ 28 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGD 28 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcC
Confidence 333333333333333333333
|
|
| >PLN03015 UDP-glucosyl transferase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0075 Score=66.08 Aligned_cols=100 Identities=19% Similarity=0.240 Sum_probs=73.9
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCChh-----------hH----HHHHHHHHHcCCCCCceEEc
Q 003557 600 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA-----------GE----MRLRAYAVAQGVQPDQIIFT 664 (811)
Q Consensus 600 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~-----------~~----~~l~~~~~~~gi~~~rv~~~ 664 (811)
+..+||.||+....+.+.-++..+.-|...+...||.+..+.. .. +.+.++.+..| +++.
T Consensus 266 ~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rG-----l~v~ 340 (470)
T PLN03015 266 ERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVG-----LVVT 340 (470)
T ss_pred CCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCc-----eEEE
Confidence 3569999999999999999999999999999999999853210 01 12222222222 5677
Q ss_pred CCCChHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCccccc
Q 003557 665 DVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLP 708 (811)
Q Consensus 665 ~~~~~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~ 708 (811)
++.|..+.|.- ..+-.|| ...|-+|++||+++|||+|+++
T Consensus 341 ~W~PQ~~vL~h-~~vg~fv---tH~GwnS~~Eai~~GvP~v~~P 380 (470)
T PLN03015 341 QWAPQVEILSH-RSIGGFL---SHCGWSSVLESLTKGVPIVAWP 380 (470)
T ss_pred ecCCHHHHhcc-CccCeEE---ecCCchhHHHHHHcCCCEEecc
Confidence 89998888853 4455565 5677889999999999999986
|
|
| >COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.014 Score=60.51 Aligned_cols=303 Identities=16% Similarity=0.136 Sum_probs=179.9
Q ss_pred cceEeeecCCCCCChhHhhHHHHhcccCCCC-eEEEEEecCCCCChHHHHHHHhccCce---EECCCC----C-------
Q 003557 425 RLRVGYVSSDFGNHPLSHLMGSVFGMHNKEN-VEVFCYALSPNDGTEWRQRTQSEAEHF---VDVSAM----S------- 489 (811)
Q Consensus 425 ~lrvg~~s~~~~~h~~~~~l~~l~~~~d~~~-~ev~~y~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~------- 489 (811)
.+||..|++ .-|=..-+.++++.+++.. ||.++..++...+..+...+.+..+-. +++.-+ +
T Consensus 3 ~~Kv~~I~G---TRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~ 79 (383)
T COG0381 3 MLKVLTIFG---TRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGN 79 (383)
T ss_pred ceEEEEEEe---cCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHH
Confidence 355665554 4566667788888887776 999999999887655555544443321 222212 1
Q ss_pred -HHHHHHHHHhCCCeEEEeCCCCCCCcchhhhhcCC-C---ceEEeccccCCCCCCCcccE------------EEecCcc
Q 003557 490 -SDMIAKLINEDKIQILINLNGYTKGARNEIFAMQP-A---PIQVSYMGFPGTTGASYIDY------------LVTDEFV 552 (811)
Q Consensus 490 -~~~~~~~i~~~~~dilv~~~~~~~~~~~~~~~~r~-A---pvq~~~~g~~~t~g~~~~d~------------~~~d~~~ 552 (811)
...+-+.+.+.++|++ --||.+...++--+ | -|.|.+. -.|+.+.|- .+|+-.+
T Consensus 80 ~i~~~~~vl~~~kPD~V-----lVhGDT~t~lA~alaa~~~~IpV~Hv----EAGlRt~~~~~PEE~NR~l~~~~S~~hf 150 (383)
T COG0381 80 IIEGLSKVLEEEKPDLV-----LVHGDTNTTLAGALAAFYLKIPVGHV----EAGLRTGDLYFPEEINRRLTSHLSDLHF 150 (383)
T ss_pred HHHHHHHHHHhhCCCEE-----EEeCCcchHHHHHHHHHHhCCceEEE----ecccccCCCCCcHHHHHHHHHHhhhhhc
Confidence 1457788889999988 44555544444211 1 2223221 123333322 2445566
Q ss_pred CCcCCCC------CCcc-ceEEcCCccccCCCccccccCCCCCCCCCcCC-CCCCCCcEEEEecCCCC---CCCHHHHHH
Q 003557 553 SPLRYAH------IYSE-KLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSD-YGLPEDKFIFACFNQLY---KMDPEIFNT 621 (811)
Q Consensus 553 ~p~~~~~------~~~e-~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~-~gl~~~~~~~~~~~~~~---K~~~~~~~~ 621 (811)
.|.+... -+.| ++.-..++.+.-- ....... ......... ++.+.+.++..++.|.. +.-..++++
T Consensus 151 apte~ar~nLl~EG~~~~~IfvtGnt~iDal--~~~~~~~-~~~~~~~~~~~~~~~~~~iLvT~HRreN~~~~~~~i~~a 227 (383)
T COG0381 151 APTEIARKNLLREGVPEKRIFVTGNTVIDAL--LNTRDRV-LEDSKILAKGLDDKDKKYILVTAHRRENVGEPLEEICEA 227 (383)
T ss_pred CChHHHHHHHHHcCCCccceEEeCChHHHHH--HHHHhhh-ccchhhHHhhhccccCcEEEEEcchhhcccccHHHHHHH
Confidence 7765422 1222 2222222111000 0000000 000111111 45555568888877654 666788888
Q ss_pred HHHHHhhcCCeEEEeecCChhhHHHHHHHH-HHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCChhHHHHHHHh
Q 003557 622 WCNILRRVPNSALWLLRFPAAGEMRLRAYA-VAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWA 700 (811)
Q Consensus 622 ~~~il~~~p~~~l~l~~~~~~~~~~l~~~~-~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~ 700 (811)
..+|+...|+..++.--.. ..++++.. ..++- .+||.+.+...+.+++.++..+=+.| ..+|.-.=||-..
T Consensus 228 l~~i~~~~~~~~viyp~H~---~~~v~e~~~~~L~~-~~~v~li~pl~~~~f~~L~~~a~~il----tDSGgiqEEAp~l 299 (383)
T COG0381 228 LREIAEEYPDVIVIYPVHP---RPRVRELVLKRLKN-VERVKLIDPLGYLDFHNLMKNAFLIL----TDSGGIQEEAPSL 299 (383)
T ss_pred HHHHHHhCCCceEEEeCCC---ChhhhHHHHHHhCC-CCcEEEeCCcchHHHHHHHHhceEEE----ecCCchhhhHHhc
Confidence 8999999988777654332 23343333 45554 47899999999999999888886665 3445567799999
Q ss_pred CCCcccccCC-ccccchhHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHH
Q 003557 701 GLPMITLPLE-KMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTN 757 (811)
Q Consensus 701 g~Pvvt~~g~-~~~~r~~~~~l~~~g~~~~~v~~~~~~y~~~~~~l~~d~~~~~~~~~ 757 (811)
|+||+++.-. .-+.+|.+ |-.- +|-.+.+..++.+..+..|++..++|+.
T Consensus 300 g~Pvl~lR~~TERPE~v~a------gt~~-lvg~~~~~i~~~~~~ll~~~~~~~~m~~ 350 (383)
T COG0381 300 GKPVLVLRDTTERPEGVEA------GTNI-LVGTDEENILDAATELLEDEEFYERMSN 350 (383)
T ss_pred CCcEEeeccCCCCccceec------CceE-EeCccHHHHHHHHHHHhhChHHHHHHhc
Confidence 9999987544 34455554 4444 6666789999999999999999888875
|
|
| >PLN02555 limonoid glucosyltransferase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0041 Score=68.63 Aligned_cols=150 Identities=12% Similarity=0.138 Sum_probs=92.2
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCCh----hhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhc
Q 003557 601 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPA----AGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS 676 (811)
Q Consensus 601 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~----~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 676 (811)
..+||.+|+......+..+...+.-+...+...||.++... .....+-+-+.+ .+ .+|+.+.++.|+.+.|. .
T Consensus 277 ~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~-~~-~~~g~v~~W~PQ~~iL~-H 353 (480)
T PLN02555 277 SSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLE-KA-GDKGKIVQWCPQEKVLA-H 353 (480)
T ss_pred CceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhh-hc-CCceEEEecCCHHHHhC-C
Confidence 35899999988888888888877888888888888876321 001112222222 23 46788889999888774 2
Q ss_pred CCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchhHHHH-HhcCCCCcccc--------CCHHHHHHHHHHHhc
Q 003557 677 SLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLC-LATGLGEEMIV--------NSMKEYEERAVSLAL 747 (811)
Q Consensus 677 ~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l-~~~g~~~~~v~--------~~~~~y~~~~~~l~~ 747 (811)
..+..|+ ..+|-+|++||+++|||+|+++--.= ...-+.++ ..+|+.- -+. =+.++..+.+.++..
T Consensus 354 ~~v~~Fv---tH~G~nS~~Eai~~GVP~l~~P~~~D-Q~~Na~~~~~~~gvGv-~l~~~~~~~~~v~~~~v~~~v~~vm~ 428 (480)
T PLN02555 354 PSVACFV---THCGWNSTMEALSSGVPVVCFPQWGD-QVTDAVYLVDVFKTGV-RLCRGEAENKLITREEVAECLLEATV 428 (480)
T ss_pred CccCeEE---ecCCcchHHHHHHcCCCEEeCCCccc-cHHHHHHHHHHhCceE-EccCCccccCcCcHHHHHHHHHHHhc
Confidence 5567775 56778999999999999998862110 11112222 2235543 221 146677777777775
Q ss_pred CHHHHHHHHHHH
Q 003557 748 DRQKLQALTNKL 759 (811)
Q Consensus 748 d~~~~~~~~~~~ 759 (811)
+++ -..+|++.
T Consensus 429 ~~~-g~~~r~ra 439 (480)
T PLN02555 429 GEK-AAELKQNA 439 (480)
T ss_pred Cch-HHHHHHHH
Confidence 532 23344433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00051 Score=44.88 Aligned_cols=32 Identities=47% Similarity=0.635 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 003557 296 EAHANLASAYKDSGHVEAAIKSYKQALLLRPD 327 (811)
Q Consensus 296 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 327 (811)
.+|+++|.+|..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0022 Score=68.11 Aligned_cols=139 Identities=14% Similarity=0.149 Sum_probs=89.0
Q ss_pred CCCcEEEEecCCCCCCC-H----HHHHHHHHHHhhcCCeEEEeecC-ChhhHHHHHHHHHHcCCCCCceEEcCCCChHHH
Q 003557 599 PEDKFIFACFNQLYKMD-P----EIFNTWCNILRRVPNSALWLLRF-PAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEH 672 (811)
Q Consensus 599 ~~~~~~~~~~~~~~K~~-~----~~~~~~~~il~~~p~~~l~l~~~-~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~ 672 (811)
..+.+++.++.+..... + .+.++..++.+. ++..+++... .+.+...+.+.+.+. ++|.+.+..++.++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~-~~~~vi~~~hn~p~~~~~i~~~l~~~----~~v~~~~~l~~~~~ 252 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAER-QNVPVIFPLHNNPRGSDIIIEKLKKY----DNVRLIEPLGYEEY 252 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHH-TTEEEEEE--S-HHHHHHHHHHHTT-----TTEEEE----HHHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhc-CCCcEEEEecCCchHHHHHHHHhccc----CCEEEECCCCHHHH
Confidence 56778888888777666 5 555555666555 6666665544 244466666655554 39999999999999
Q ss_pred HHhcCCCcEEecCCCCCChhHHH-HHHHhCCCccccc--CCccccchhHHHHHhcCCCCccccCCHHHHHHHHHHHhcCH
Q 003557 673 IRRSSLADLFLDTPLCNAHTTGT-DILWAGLPMITLP--LEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDR 749 (811)
Q Consensus 673 ~~~~~~~Dv~ld~~~~~g~~t~~-eal~~g~Pvvt~~--g~~~~~r~~~~~l~~~g~~~~~v~~~~~~y~~~~~~l~~d~ 749 (811)
+.+++.++++| -++| ++. ||.++|+|||++. |+...+|.. |-.- ++..+.++..+.+.+...++
T Consensus 253 l~ll~~a~~vv----gdSs-GI~eEa~~lg~P~v~iR~~geRqe~r~~-------~~nv-lv~~~~~~I~~ai~~~l~~~ 319 (346)
T PF02350_consen 253 LSLLKNADLVV----GDSS-GIQEEAPSLGKPVVNIRDSGERQEGRER-------GSNV-LVGTDPEAIIQAIEKALSDK 319 (346)
T ss_dssp HHHHHHESEEE----ESSH-HHHHHGGGGT--EEECSSS-S-HHHHHT-------TSEE-EETSSHHHHHHHHHHHHH-H
T ss_pred HHHHhcceEEE----EcCc-cHHHHHHHhCCeEEEecCCCCCHHHHhh-------cceE-EeCCCHHHHHHHHHHHHhCh
Confidence 99999999997 5556 788 9999999999984 556666655 5544 56678888888888877774
Q ss_pred HHHHHH
Q 003557 750 QKLQAL 755 (811)
Q Consensus 750 ~~~~~~ 755 (811)
+....+
T Consensus 320 ~~~~~~ 325 (346)
T PF02350_consen 320 DFYRKL 325 (346)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 544443
|
1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C. |
| >PLN02534 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0042 Score=68.66 Aligned_cols=102 Identities=19% Similarity=0.315 Sum_probs=71.7
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEeecCCh---hhHHHH-HHHHHHcCCCCCceEEcCCCChHHHHHhc
Q 003557 601 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPA---AGEMRL-RAYAVAQGVQPDQIIFTDVAMKQEHIRRS 676 (811)
Q Consensus 601 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~---~~~~~l-~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 676 (811)
..+||.||+......+.-+.-.+.-|+..+...||.+..+. .....+ -+-+.+. +...++++.|+.|..+.+.
T Consensus 283 ~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~-~~~~g~~v~~w~pq~~iL~-- 359 (491)
T PLN02534 283 RSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEER-IKGRGLLIKGWAPQVLILS-- 359 (491)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHh-hccCCeeccCCCCHHHHhc--
Confidence 45999999988888887777666888899999999987421 101111 1222222 2245678889999877763
Q ss_pred CCCcE--EecCCCCCChhHHHHHHHhCCCcccccC
Q 003557 677 SLADL--FLDTPLCNAHTTGTDILWAGLPMITLPL 709 (811)
Q Consensus 677 ~~~Dv--~ld~~~~~g~~t~~eal~~g~Pvvt~~g 709 (811)
..+| |+ ..+|.+|++||+++|||+|+++-
T Consensus 360 -h~~v~~fv---tH~G~ns~~ea~~~GvP~v~~P~ 390 (491)
T PLN02534 360 -HPAIGGFL---THCGWNSTIEGICSGVPMITWPL 390 (491)
T ss_pred -CCccceEE---ecCccHHHHHHHHcCCCEEeccc
Confidence 3444 54 56779999999999999999874
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00077 Score=44.00 Aligned_cols=33 Identities=39% Similarity=0.516 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Q 003557 296 EAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 328 (811)
Q Consensus 296 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 328 (811)
++++.+|.++...|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456667777777777777777777777776654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.16 Score=63.82 Aligned_cols=65 Identities=14% Similarity=0.119 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 003557 259 LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 325 (811)
Q Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 325 (811)
...+.|...|++....|+++.|..++-+|.+.. -++++...|..++..|+...|+..+++.++++
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 346799999999999999999999999988876 46788999999999999999999999999664
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.15 Score=53.08 Aligned_cols=146 Identities=21% Similarity=0.208 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhccCCC-chHHHHHHHHHHHcC-------C
Q 003557 175 VDEAIQCYNQCLSLQPSHPQALTNLGNIYME----WNMLPAAASYYKATLAVTTGL-SAPFNNLAVIYKQQG-------N 242 (811)
Q Consensus 175 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g-------~ 242 (811)
..+|.+.|+.+. ...++.+.+.+|.+|.. ..+..+|..+|+++.+..... ......++..|..-. +
T Consensus 93 ~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~ 170 (292)
T COG0790 93 KTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYD 170 (292)
T ss_pred HHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHH
Confidence 444444444222 22334444445544444 224555555555554443222 222444444444321 2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC---------
Q 003557 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKE----IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG--------- 309 (811)
Q Consensus 243 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------- 309 (811)
...|...|.++-... +..+...+|.+|.. ..++.+|..+|+++-+... ....+.++ ++...|
T Consensus 171 ~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 171 DKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred HHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhc
Confidence 246777777776654 67777788877754 3478888888888887766 66777777 555555
Q ss_pred ------CHHHHHHHHHHHHhcCCC
Q 003557 310 ------HVEAAIKSYKQALLLRPD 327 (811)
Q Consensus 310 ------~~~~A~~~~~~al~~~p~ 327 (811)
+...|...+.++....+.
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCCh
Confidence 555566666665555443
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.014 Score=58.28 Aligned_cols=98 Identities=24% Similarity=0.267 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 003557 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT----FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLG 99 (811)
Q Consensus 24 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 99 (811)
+..+-.-|+-|++..+|..|...|.+.++..-. +...|.+.+.+.+..|+|..|+.-..+++..+|.+..+++.-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 344555566666667777777777776664322 2556666666666677777777777777777777777777667
Q ss_pred HHHHHcCChHHHHHHHHHHHhh
Q 003557 100 NVYKALGMPQEAIMCYQRAVQT 121 (811)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al~~ 121 (811)
.++..+.++.+|...++..++.
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhh
Confidence 7777666666666666666544
|
|
| >cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0078 Score=69.64 Aligned_cols=176 Identities=16% Similarity=0.176 Sum_probs=107.5
Q ss_pred CCCCcEEEEecCCC--CCCCHHHHHHHHHHHh---h--cCCeEEEeecCChhh-H--H----HHHHHHHHcCCCCCceEE
Q 003557 598 LPEDKFIFACFNQL--YKMDPEIFNTWCNILR---R--VPNSALWLLRFPAAG-E--M----RLRAYAVAQGVQPDQIIF 663 (811)
Q Consensus 598 l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~---~--~p~~~l~l~~~~~~~-~--~----~l~~~~~~~gi~~~rv~~ 663 (811)
+.++.+++|...|+ +|...-++....++.+ . .| ..+++.|.+... . . .+.+..+.-.+ ++||+|
T Consensus 474 ldpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~p-vQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~-~~kVvf 551 (778)
T cd04299 474 LDPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERP-VQFIFAGKAHPADEPGKELIQEIVEFSRRPEF-RGRIVF 551 (778)
T ss_pred cCCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCC-eEEEEEEecCccchHHHHHHHHHHHHHhCcCC-CCcEEE
Confidence 44677788888877 5988888887666644 1 34 778888865311 1 2 33333333345 579999
Q ss_pred cCCCChHHHHH--hcCCCcEEecCC--CCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccccC-----
Q 003557 664 TDVAMKQEHIR--RSSLADLFLDTP--LCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN----- 733 (811)
Q Consensus 664 ~~~~~~~~~~~--~~~~~Dv~ld~~--~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~----- 733 (811)
+. +++..++ +++.+||+|.|+ |++. ||+-+=||.-|++.++.....+..-.. |-++|.|.+
T Consensus 552 le--~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~~-------g~nGwaig~~~~~~ 622 (778)
T cd04299 552 LE--DYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGYD-------GENGWAIGDGDEYE 622 (778)
T ss_pred Ec--CCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCccccccC-------CCCceEeCCCcccc
Confidence 88 3333332 379999999997 4887 999999999999999654433333222 444522222
Q ss_pred --------CHHHH---HHHHHH-HhcC------H-HHHHHHHHHHHhhcccCCCCChHHHHHHHH-HHHHHHHH
Q 003557 734 --------SMKEY---EERAVS-LALD------R-QKLQALTNKLKSVRLTCPLFDTARWVKNLE-RSYFKMWS 787 (811)
Q Consensus 734 --------~~~~y---~~~~~~-l~~d------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~y~~~~~ 787 (811)
+.+++ ++..+. +--+ | ...+-|+..++.. .|.|++.+|+++.. +.|.-+.+
T Consensus 623 ~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~---~p~fs~~Rmv~eY~~~~Y~p~~~ 693 (778)
T cd04299 623 DDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATL---GPRFSAERMVREYVERFYLPAAR 693 (778)
T ss_pred ChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhc---ccCCCHHHHHHHHHHHhHHHHHH
Confidence 11211 222222 3323 3 4666666666553 67899999999864 45554433
|
Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.014 Score=53.54 Aligned_cols=90 Identities=29% Similarity=0.279 Sum_probs=53.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCc----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003557 30 LGNLMKAQGLVQEAYSCYLEALRIQPTF----------------------AIAWSNLAGLFMESGDLNRALQYYKEAVKL 87 (811)
Q Consensus 30 l~~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 87 (811)
.|......|+.+.++..+++++.+.... ..+...++..+...|++++|+..+++++..
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~ 91 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL 91 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 3555566777888888888887764221 234444555556666666666666666666
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003557 88 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 119 (811)
Q Consensus 88 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 119 (811)
+|.+..++..+..+|...|+..+|++.|++..
T Consensus 92 dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 92 DPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 66666666666666666666666666666553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.018 Score=52.90 Aligned_cols=118 Identities=20% Similarity=0.178 Sum_probs=77.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHH
Q 003557 234 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEA 313 (811)
Q Consensus 234 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 313 (811)
+......++.+.++..+++++.+.....-.-... ..-.......++.. ...+...++..+...|++++
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~~~~ 80 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDD------EEWVEPERERLREL------YLDALERLAEALLEAGDYEE 80 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT------STTHHHHHHHHHHH------HHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc------cHHHHHHHHHHHHH------HHHHHHHHHHHHHhccCHHH
Confidence 4445566777778888888777643221000000 00011111112211 13466778888899999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHHHHHh
Q 003557 314 AIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQV 363 (811)
Q Consensus 314 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l~~~~~ 363 (811)
|+..+++++..+|-+..++..++.++...|+..+|...|++..+.+.+.+
T Consensus 81 a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~el 130 (146)
T PF03704_consen 81 ALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREEL 130 (146)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988888765
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0016 Score=42.52 Aligned_cols=32 Identities=38% Similarity=0.483 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003557 25 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 56 (811)
Q Consensus 25 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 56 (811)
.+|+.+|.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.045 Score=50.86 Aligned_cols=117 Identities=18% Similarity=0.102 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----hhHHHhHHHHHHHcCCHHHHHHHH
Q 003557 76 RALQYYKEAVKLKPTFPD---AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIAFGNLASTYYERGQADMAILYY 148 (811)
Q Consensus 76 ~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~~ 148 (811)
+.....++....++.+.. +-..++..+...|++++|+..++.++....+ ..+-.+++.+....|++++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444455555555544433 4567788889999999999999988865444 556778899999999999999888
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 003557 149 KQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP 193 (811)
Q Consensus 149 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 193 (811)
....+.. -........|.++...|+-++|...|+++++..++.+
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 7653321 1122456679999999999999999999998875543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0019 Score=42.14 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003557 25 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 56 (811)
Q Consensus 25 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 56 (811)
.+++.+|.++...|++++|++.|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3 | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0028 Score=69.23 Aligned_cols=137 Identities=15% Similarity=0.085 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCCC---CCc--eEEcC-CCC------hHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCC
Q 003557 644 EMRLRAYAVAQGVQ---PDQ--IIFTD-VAM------KQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLE 710 (811)
Q Consensus 644 ~~~l~~~~~~~gi~---~~r--v~~~~-~~~------~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~ 710 (811)
.+.+...+++.|+. .|| |+|.| ..+ .-+|......||+-+.|+-|+- |.|-+|+.+||||.||-.=.
T Consensus 423 ~DpILn~irr~~L~N~~~drVKVIF~P~yL~~~dgif~l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLs 502 (633)
T PF05693_consen 423 NDPILNMIRRLGLFNNPEDRVKVIFHPEYLSGTDGIFNLDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLS 502 (633)
T ss_dssp T-HHHHHHHHTT----TT-SEEEEE--S---TTSSSS-S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTB
T ss_pred cCHHHHHHHhCCCCCCCCCceEEEEeeccccCCCCCCCCCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccch
Confidence 34455555555552 244 66666 221 2345555578999999999999 99999999999999986522
Q ss_pred ccccchhHHHHHh------cCCCCcccc-------CCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHH
Q 003557 711 KMATRVAGSLCLA------TGLGEEMIV-------NSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVK 776 (811)
Q Consensus 711 ~~~~r~~~~~l~~------~g~~~~~v~-------~~~~~y~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (811)
=.|.=+... -|+- .|- ++.+++.+.+..++. ++..|..+|.+.+. + |.++|++.+..
T Consensus 503 ----GFG~~~~~~~~~~~~~GV~--VvdR~~~n~~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~-L--S~~~dW~~~~~ 573 (633)
T PF05693_consen 503 ----GFGCWMQEHIEDPEEYGVY--VVDRRDKNYDESVNQLADFLYKFCQLSRRQRIIQRNRAER-L--SDLADWKNFGK 573 (633)
T ss_dssp ----HHHHHHHTTS-HHGGGTEE--EE-SSSS-HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHH-H--GGGGBHHHHCH
T ss_pred ----hHHHHHHHhhccCcCCcEE--EEeCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-H--HHhCCHHHHHH
Confidence 222111111 1330 222 234455555555553 66677777777644 3 67899999999
Q ss_pred HHHHHHHHHHHHH
Q 003557 777 NLERSYFKMWSLH 789 (811)
Q Consensus 777 ~~e~~y~~~~~~~ 789 (811)
..+++|..++++-
T Consensus 574 yY~~Ay~~AL~~a 586 (633)
T PF05693_consen 574 YYEKAYDLALRRA 586 (633)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999888764
|
Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.28 Score=61.79 Aligned_cols=134 Identities=21% Similarity=0.191 Sum_probs=92.8
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----------
Q 003557 192 HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA----------- 260 (811)
Q Consensus 192 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------- 260 (811)
-.+.|...|++....|+++.|...+-++.+.. -+.++...|..+...|+...|+..+++.++.+-.+
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 35788899999999999999998888887766 56778888999999999999999999988653211
Q ss_pred ------HHHHHHHHHHHHHhCCH--HHHHHHHHHHHhcCCCcHHHHHHHHHHHH------------hCCCHHH---HHHH
Q 003557 261 ------ADGLVNRGNTYKEIGRV--TDAIQDYIRAITIRPTMAEAHANLASAYK------------DSGHVEA---AIKS 317 (811)
Q Consensus 261 ------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~------------~~g~~~~---A~~~ 317 (811)
..+...++......+++ .+-+++|..+.+..|....-++.+|..|. +.|++.. ++-.
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~ 1826 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYF 1826 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHH
Confidence 11333444444455553 35567888888888876666666664332 3455555 5555
Q ss_pred HHHHHhcCCC
Q 003557 318 YKQALLLRPD 327 (811)
Q Consensus 318 ~~~al~~~p~ 327 (811)
|.+++..+-.
T Consensus 1827 ~~~sl~yg~~ 1836 (2382)
T KOG0890|consen 1827 FGRALYYGNQ 1836 (2382)
T ss_pred HHHHHHhcch
Confidence 6677665544
|
|
| >KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0087 Score=60.06 Aligned_cols=125 Identities=15% Similarity=0.175 Sum_probs=98.3
Q ss_pred cCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEE-cCCCChHHHHHhcCCCcEE--ecCCCCCC--hhHHHHHHHhCCC
Q 003557 629 VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIF-TDVAMKQEHIRRSSLADLF--LDTPLCNA--HTTGTDILWAGLP 703 (811)
Q Consensus 629 ~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~-~~~~~~~~~~~~~~~~Dv~--ld~~~~~g--~~t~~eal~~g~P 703 (811)
.|+...+|-|.||. ++...+.+.+... .+|.| +++...+||...+..+|+- |.|+..+= ++-++|-.-+|+|
T Consensus 291 lP~llciITGKGPl-kE~Y~~~I~~~~~--~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglP 367 (444)
T KOG2941|consen 291 LPSLLCIITGKGPL-KEKYSQEIHEKNL--QHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLP 367 (444)
T ss_pred CCcEEEEEcCCCch-hHHHHHHHHHhcc--cceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCc
Confidence 68777777789998 8889999999887 45555 5688888998888999965 55555444 7889999999999
Q ss_pred cccccCCccccchhHHHHHhcCCCCccccCCHHHHHHHHHHHhc----CHHHHHHHHHHHHhhc
Q 003557 704 MITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL----DRQKLQALTNKLKSVR 763 (811)
Q Consensus 704 vvt~~g~~~~~r~~~~~l~~~g~~~~~v~~~~~~y~~~~~~l~~----d~~~~~~~~~~~~~~~ 763 (811)
|+++.=...- .+.+. |-++ ++..|.++..+...-|.+ +...+.++++++++..
T Consensus 368 vcA~~fkcl~-----ELVkh-~eNG-lvF~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~~ 424 (444)
T KOG2941|consen 368 VCAVNFKCLD-----ELVKH-GENG-LVFEDSEELAEQLQMLFKNFPDNADELNQLKKNLREEQ 424 (444)
T ss_pred eeeecchhHH-----HHHhc-CCCc-eEeccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHH
Confidence 9976532222 23333 8888 999999999999999988 8999999999988853
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.004 Score=62.08 Aligned_cols=98 Identities=20% Similarity=0.264 Sum_probs=68.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 003557 230 FNNLAVIYKQQGNYADAISCYNEVLRIDPLA----ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAY 305 (811)
Q Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 305 (811)
+-.-|+-|++.++|..|...|.+.++....+ ...|.+.+-+....|+|..|+....+++.++|.+..+++.=+.|+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 3345666777777777777777777664433 336677777777777777777777777777777777777777777
Q ss_pred HhCCCHHHHHHHHHHHHhcCCC
Q 003557 306 KDSGHVEAAIKSYKQALLLRPD 327 (811)
Q Consensus 306 ~~~g~~~~A~~~~~~al~~~p~ 327 (811)
..+.++.+|..+.+..++.+-+
T Consensus 164 ~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHhhhhhhhHH
Confidence 7777777777777776665433
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.52 Score=48.98 Aligned_cols=183 Identities=19% Similarity=0.192 Sum_probs=105.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cC
Q 003557 35 KAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES----GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA----LG 106 (811)
Q Consensus 35 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g 106 (811)
...+++..|...+.++-.. .+..+...++.+|... .+..+|..+|+.+. ...++.+.+.+|.+|.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCccc
Confidence 3455666666666665442 2234555555555543 34566666666333 33445566666666655 33
Q ss_pred ChHHHHHHHHHHHhhCCC--hhHHHhHHHHHHHcC-------CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cC
Q 003557 107 MPQEAIMCYQRAVQTRPN--AIAFGNLASTYYERG-------QADMAILYYKQAIGCDPRFLEAYNNLGNALKD----VG 173 (811)
Q Consensus 107 ~~~~A~~~~~~al~~~p~--~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g 173 (811)
+..+|..+|+++.+.... ......++..|..-. +...|...|.++.... +..+...+|.+|.. ..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~ 205 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPR 205 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCc
Confidence 666677777666665222 234555555555431 2235666776666544 55566777766643 34
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC---------------ChHHHHHHHHHHHhccCCC
Q 003557 174 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN---------------MLPAAASYYKATLAVTTGL 226 (811)
Q Consensus 174 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~~l~~~~~~ 226 (811)
++.+|...|+++.+... ....+.++ ++...| +...|...+.+.....+..
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 67777777777777655 66666666 555444 6677777777776665443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.065 Score=49.85 Aligned_cols=115 Identities=18% Similarity=0.103 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhhCCC----hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHH
Q 003557 110 EAIMCYQRAVQTRPN----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF---LEAYNNLGNALKDVGRVDEAIQCY 182 (811)
Q Consensus 110 ~A~~~~~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~ 182 (811)
+.....++....++. ......++..+...|++++|+..++.++....+. .-+-.+++.+...+|++++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 334444455554533 3455677888888899999998888888544332 224567888888899999988887
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC
Q 003557 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG 225 (811)
Q Consensus 183 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 225 (811)
......+ -.+......|.++...|+-++|...|+++++..++
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 6532211 11234556788899999999999999998888643
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.2 Score=55.07 Aligned_cols=238 Identities=16% Similarity=0.106 Sum_probs=137.3
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH----------HHHHHHHHHcCChHHHHHHHHHHHhh
Q 003557 52 RIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAY----------LNLGNVYKALGMPQEAIMCYQRAVQT 121 (811)
Q Consensus 52 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~~~~g~~~~A~~~~~~al~~ 121 (811)
+.+|. +..|..++......-.++.|...|-+.-... . .... ...+.+-.--|++++|.+.|-.+-..
T Consensus 687 EdnPH-prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~-G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 687 EDNPH-PRLWRLLAEYALFKLALDTAEHAFVRCGDYA-G-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR 763 (1189)
T ss_pred hcCCc-hHHHHHHHHHHHHHHhhhhHhhhhhhhcccc-c-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh
Confidence 34454 7899999998888888888888776653221 1 1111 22334444457888888887665332
Q ss_pred CCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHH
Q 003557 122 RPNAIAFGNLASTYYERGQADMAILYYKQAIGCD--PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 199 (811)
Q Consensus 122 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 199 (811)
+- -...+.+.|+|-...++++..-.-. .....++.++|..+..+..+++|.++|.+.-. ..++
T Consensus 764 DL-------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~ 828 (1189)
T KOG2041|consen 764 DL-------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQ 828 (1189)
T ss_pred hh-------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhH
Confidence 21 1234455666666665555432111 11235788899999999999999998876432 2345
Q ss_pred HHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q 003557 200 GNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 279 (811)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 279 (811)
..+++...++++-..+ ...-|++...+-.+|..+...|.-++|.+.|-+.- .|. + .......++++.+
T Consensus 829 ~ecly~le~f~~LE~l----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk---a---Av~tCv~LnQW~~ 896 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVL----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK---A---AVHTCVELNQWGE 896 (1189)
T ss_pred HHHHHHHHhhhhHHHH----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH---H---HHHHHHHHHHHHH
Confidence 5666666666654433 33456777777788888888888888887775431 121 1 1123344555666
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 003557 280 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 321 (811)
Q Consensus 280 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 321 (811)
|.++-++-. -|.-.......+.-+...++.-+|++.++++
T Consensus 897 avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 897 AVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 665544321 1222222222333444555666666666555
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.16 Score=53.04 Aligned_cols=240 Identities=10% Similarity=-0.012 Sum_probs=151.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Q 003557 80 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL 159 (811)
Q Consensus 80 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 159 (811)
.+++++..-+-.++.|+.....+...++-+.|+...++.+...|+ ....++.+|...++-+....+|+++.+.-
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps--L~~~lse~yel~nd~e~v~~~fdk~~q~L---- 363 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS--LTMFLSEYYELVNDEEAVYGCFDKCTQDL---- 363 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc--hheeHHHHHhhcccHHHHhhhHHHHHHHH----
Confidence 345556656666777777777777777777787777777766666 34455666666666666666666654210
Q ss_pred HHHHHHHHHHH---HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHH-H
Q 003557 160 EAYNNLGNALK---DVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLA-V 235 (811)
Q Consensus 160 ~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la-~ 235 (811)
..-+..+..-. ..|+++...+++-+-. .+-..+++.+.+.-.+..-.+.|..+|-++-+..-....++..-| .
T Consensus 364 ~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~---~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~ 440 (660)
T COG5107 364 KRKYSMGESESASKVDNNFEYSKELLLKRI---NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFI 440 (660)
T ss_pred HHHHhhhhhhhhccccCCccccHHHHHHHH---hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHH
Confidence 00011111111 1233433333332211 133445555556666666677778888777665422223322222 2
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHhCCCHHH
Q 003557 236 IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT--MAEAHANLASAYKDSGHVEA 313 (811)
Q Consensus 236 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~ 313 (811)
-|...|++.-|...|+-.+...|+++......-..+...++-+.|..+|+++++.-.+ -..+|-.+...-..-|+...
T Consensus 441 E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~ 520 (660)
T COG5107 441 EYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNN 520 (660)
T ss_pred HHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHH
Confidence 2446788888888888888888888777777777777888888888888877765332 25577777777788899999
Q ss_pred HHHHHHHHHhcCCCC
Q 003557 314 AIKSYKQALLLRPDF 328 (811)
Q Consensus 314 A~~~~~~al~~~p~~ 328 (811)
+...-++..+..|..
T Consensus 521 v~sLe~rf~e~~pQe 535 (660)
T COG5107 521 VYSLEERFRELVPQE 535 (660)
T ss_pred HHhHHHHHHHHcCcH
Confidence 999889999888875
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0012 Score=66.05 Aligned_cols=86 Identities=22% Similarity=0.305 Sum_probs=43.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 003557 36 AQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCY 115 (811)
Q Consensus 36 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 115 (811)
..|.+++|++.|..++.++|.....+...+.+++++++...|+.-+..+++++|+...-|-..+.....+|++++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555554444444444445555555555555
Q ss_pred HHHHhh
Q 003557 116 QRAVQT 121 (811)
Q Consensus 116 ~~al~~ 121 (811)
..+.++
T Consensus 206 ~~a~kl 211 (377)
T KOG1308|consen 206 ALACKL 211 (377)
T ss_pred HHHHhc
Confidence 544444
|
|
| >PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0023 Score=64.85 Aligned_cols=210 Identities=16% Similarity=0.095 Sum_probs=95.3
Q ss_pred HHHHHHHhCCCeEEEeCCCCCCCcchhhhhc-CCCceEEeccccCCCCCCCcccEEEecCccCCcCCCCCCccceEEcCC
Q 003557 492 MIAKLINEDKIQILINLNGYTKGARNEIFAM-QPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPH 570 (811)
Q Consensus 492 ~~~~~i~~~~~dilv~~~~~~~~~~~~~~~~-r~Apvq~~~~g~~~t~g~~~~d~~~~d~~~~p~~~~~~~~e~~~~lp~ 570 (811)
.+.+.||+.++|++||+.+.. +..+++. -.||.-+.+-+... .+.-..+..+.. +. ..+..++...+-.
T Consensus 3 ~l~~~Lr~~~yD~vid~~~~~---~s~~l~~~~~a~~riG~~~~~~-~~~~~~~~~~~~----~~--~~~~v~~~~~ll~ 72 (247)
T PF01075_consen 3 ALIKKLRKEKYDLVIDLQGSF---RSALLARLSGAKIRIGFGKDDR-GRSLFYNRKVDR----PP--NKHMVDRYLSLLS 72 (247)
T ss_dssp HHHHHHCTSB-SEEEE-S-SH---HHHHHTCCCSBSEEEEE-TTTS-GGGGGESEEE-T----TS--SSSHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEECCCCc---cHHHHHHHHhhccccccCccch-hhhhcccccccc----cc--cchHHHHHHHHHH
Confidence 578999999999999997653 4444443 45788877744432 111111222211 11 1122222111110
Q ss_pred ccccCCCccccccCCC--CCCCCCcCCCC-CCCCcEEEEecCC-CCCC-CHHHHHHHHHHHhhcCCeEEEeecCChhhHH
Q 003557 571 CYFVNDYKQKNMDVLD--PNCQPKRSDYG-LPEDKFIFACFNQ-LYKM-DPEIFNTWCNILRRVPNSALWLLRFPAAGEM 645 (811)
Q Consensus 571 ~~~~~~~~~~~~~~~~--~~~~~~r~~~g-l~~~~~~~~~~~~-~~K~-~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~ 645 (811)
...-.......+.... +.....+..++ .+...++|...++ ..|. ..+.+..+.+.+.+.. ..++|+|.+.....
T Consensus 73 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~-~~vvl~g~~~~~~~ 151 (247)
T PF01075_consen 73 ELLGIPYPSTKPELPLSEEEEAAARELLKSKDKPYIGINPGASWPSKRWPAEKWAELIERLKERG-YRVVLLGGPEEQEK 151 (247)
T ss_dssp HHHTS-SSSSSS----THHHHTTHHTTTT-TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT--EEEE--SSHHHHH
T ss_pred HhcCCCCCCCCcCCcCCHHHHHHHHHhhhhccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC-ceEEEEccchHHHH
Confidence 0000000000000000 00111233333 3334455544442 3344 4444444444444443 45677776644223
Q ss_pred HHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchh
Q 003557 646 RLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 717 (811)
Q Consensus 646 ~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~ 717 (811)
...+.+.+ +.....+.+.|..+-.+..+++..+|+++-+ - +-.+==|-++|+|+|++-|.+...+.+
T Consensus 152 ~~~~~~~~-~~~~~~~~~~~~~~l~e~~ali~~a~~~I~~--D--tg~~HlA~a~~~p~v~lfg~t~~~~~~ 218 (247)
T PF01075_consen 152 EIADQIAA-GLQNPVINLAGKTSLRELAALISRADLVIGN--D--TGPMHLAAALGTPTVALFGPTNPERWG 218 (247)
T ss_dssp HHHHHHHT-THTTTTEEETTTS-HHHHHHHHHTSSEEEEE--S--SHHHHHHHHTT--EEEEESSS-HHHHS
T ss_pred HHHHHHHH-hcccceEeecCCCCHHHHHHHHhcCCEEEec--C--ChHHHHHHHHhCCEEEEecCCCHHHhC
Confidence 33333332 3322368889988999999999999999822 1 223334778999999999998887766
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A. |
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=1.2 Score=48.38 Aligned_cols=244 Identities=14% Similarity=0.060 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---hhHHHhHHHHHHHcCCHHHHHHHHHHH
Q 003557 75 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN---AIAFGNLASTYYERGQADMAILYYKQA 151 (811)
Q Consensus 75 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~la~~~~~~g~~~~A~~~~~~a 151 (811)
+...+.+....+..|+++......+..+...|+.+.|+..++..++..-. ...++.++.++..+.+|..|...+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44555566666678888888888888888888888888888877761111 445667888888888888888888888
Q ss_pred HHcCCCcHHHHHHHH-HHHHH--------cCCHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003557 152 IGCDPRFLEAYNNLG-NALKD--------VGRVDEAIQCYNQCLS---LQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219 (811)
Q Consensus 152 l~~~p~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 219 (811)
.+.+.-..-.|..++ .++.. .|+-++|..+++...+ ..|++..+-. .-..++.++-.+.
T Consensus 330 ~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~---------f~~RKverf~~~~ 400 (546)
T KOG3783|consen 330 RDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK---------FIVRKVERFVKRG 400 (546)
T ss_pred HhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH---------HHHHHHHHHhccc
Confidence 776655554454444 22221 2344444444433322 2222211100 0011111111111
Q ss_pred HhccCCCch--HHHHHHHHHHHc--CCHHHHHHHHHHH--Hhc-CCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-
Q 003557 220 LAVTTGLSA--PFNNLAVIYKQQ--GNYADAISCYNEV--LRI-DPLAA-DGLVNRGNTYKEIGRVTDAIQDYIRAITI- 290 (811)
Q Consensus 220 l~~~~~~~~--~~~~la~~~~~~--g~~~~A~~~~~~a--l~~-~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~- 290 (811)
- .++.... .+..++..+..- ...++..+.-... -+. ++++. --+..+|.++..+|+...|..+|+..++.
T Consensus 401 ~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e 479 (546)
T KOG3783|consen 401 P-LNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKE 479 (546)
T ss_pred c-ccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 1111111 234444443321 1222222111111 111 12221 24567899999999999999999988843
Q ss_pred --CCC----cHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCC
Q 003557 291 --RPT----MAEAHANLASAYKDSGH-VEAAIKSYKQALLLRPDF 328 (811)
Q Consensus 291 --~p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~ 328 (811)
... .|.+++.+|.+|.++|. ..++..++.+|-+...++
T Consensus 480 ~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 480 SKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 111 26799999999999998 999999999998877554
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.15 Score=53.58 Aligned_cols=166 Identities=12% Similarity=0.072 Sum_probs=106.2
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 003557 11 QCCRQALALNPLLVDAHSNLGNLMKAQGL------------VQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 78 (811)
Q Consensus 11 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 78 (811)
..|++.++.+|.+.++|..+....-..-. .+.-+.+|++|++.+|++...+..+-....+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778888899999999888766544322 345667778888888887777777777777777777777
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003557 79 QYYKEAVKLKPTFPDAYLNLGNVYKA---LGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCD 155 (811)
Q Consensus 79 ~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 155 (811)
+.+++++..+|++...|......... .-.+++....|.++++.-.. ..............++
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~---------~~~~~~~~~~~~~~~e------ 150 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSR---------RRSGRMTSHPDLPELE------ 150 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH---------hhccccccccchhhHH------
Confidence 78888888888777776655544433 23456666666666653211 0000000000000000
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003557 156 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 191 (811)
Q Consensus 156 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 191 (811)
.....++..+...+.+.|..+.|+..++..++.+-.
T Consensus 151 ~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 151 EFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 011335677778888899999999999999887643
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.11 Score=50.52 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003557 73 DLNRALQYYKEAVKLKPTFPD----AYLNLGNVYKALGMPQEAIMCYQRAVQ 120 (811)
Q Consensus 73 ~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~ 120 (811)
+.++|+..|++.+++.++..+ ++..+..+++++|++++..+.|.+++.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 455555555555555444322 344455555555555555555555443
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0018 Score=64.92 Aligned_cols=93 Identities=23% Similarity=0.231 Sum_probs=82.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHH
Q 003557 235 VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAA 314 (811)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 314 (811)
.-.+..|.+++|++.|..+++++|.....+...+.++.++++...|+..+..+++++|+...-|-..+.+...+|++++|
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 33446788999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HHHHHHHHhcCCC
Q 003557 315 IKSYKQALLLRPD 327 (811)
Q Consensus 315 ~~~~~~al~~~p~ 327 (811)
...+..+.+++-+
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 9999999888654
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.1 Score=50.62 Aligned_cols=205 Identities=17% Similarity=0.207 Sum_probs=132.5
Q ss_pred cCChHHHHHHHHHHHhhCCC-----hhHHHhHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcH-HHHHHHHHHHHHcC
Q 003557 105 LGMPQEAIMCYQRAVQTRPN-----AIAFGNLASTYYERGQADMAILYYKQAIGC-----DPRFL-EAYNNLGNALKDVG 173 (811)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~~~~~la~~~~~~g 173 (811)
..+.++|+..|++++++.+. ..++..+..+++.++++++..+.|.+++.. ..+.. ...+.+...-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34789999999999999876 457778889999999999999999988732 11211 12233333333334
Q ss_pred CHHHHHHHHHHHHhc--CCCChH----HHHHHHHHHHHcCChHHHHHHHHHHHhccCC------------CchHHHHHHH
Q 003557 174 RVDEAIQCYNQCLSL--QPSHPQ----ALTNLGNIYMEWNMLPAAASYYKATLAVTTG------------LSAPFNNLAV 235 (811)
Q Consensus 174 ~~~~A~~~~~~al~~--~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~------------~~~~~~~la~ 235 (811)
+.+--.+.|+..++. +.++.. .-..+|.+|+..+++.+-.+.+++.-+.... ..++|..-..
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 444444444444331 222333 3346899999999988888877776543211 1234555567
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC--CHHHH----HHHHHHHHHhCCHHHHHHHHHHHHhcCC-----CcHH--HHHHHH
Q 003557 236 IYKQQGNYADAISCYNEVLRIDPL--AADGL----VNRGNTYKEIGRVTDAIQDYIRAITIRP-----TMAE--AHANLA 302 (811)
Q Consensus 236 ~~~~~g~~~~A~~~~~~al~~~p~--~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~--~~~~la 302 (811)
.|-.+++-.+-..+|++++..... ++.+. -.=|..+.+.|++++|-..|-++++... .... -|.-||
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 788888888888889988876432 22222 2235667788999999988888887632 2222 355677
Q ss_pred HHHHhCC
Q 003557 303 SAYKDSG 309 (811)
Q Consensus 303 ~~~~~~g 309 (811)
.++.+.|
T Consensus 280 NMLmkS~ 286 (440)
T KOG1464|consen 280 NMLMKSG 286 (440)
T ss_pred HHHHHcC
Confidence 7777766
|
|
| >PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.038 Score=57.29 Aligned_cols=201 Identities=13% Similarity=0.113 Sum_probs=107.3
Q ss_pred HHhCCCeEEEeCCCCCCCcchhhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCcCCCCCCccceEEcCCccccCC
Q 003557 497 INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVND 576 (811)
Q Consensus 497 i~~~~~dilv~~~~~~~~~~~~~~~~r~Apvq~~~~g~~~t~g~~~~d~~~~d~~~~p~~~~~~~~e~~~~lp~~~~~~~ 576 (811)
+....+|++|-..+.|+.....+-.....++.+.+++.|... ...+|.+|+-. ...-.-..+++..++.--..+
T Consensus 53 ~~~~~pdLiIsaGr~t~~~~~~l~r~~gg~~~~V~i~~P~~~-~~~FDlvi~p~-----HD~~~~~~Nvl~t~ga~~~i~ 126 (311)
T PF06258_consen 53 LEPPWPDLIISAGRRTAPAALALRRASGGRTKTVQIMDPRLP-PRPFDLVIVPE-----HDRLPRGPNVLPTLGAPNRIT 126 (311)
T ss_pred ccCCCCcEEEECCCchHHHHHHHHHHcCCCceEEEEcCCCCC-ccccCEEEECc-----ccCcCCCCceEecccCCCcCC
Confidence 444679999866666644333333333455677777888544 77788877622 111112234444433111111
Q ss_pred CccccccCCCCCCCCCcCCC-CCCC--CcEEEEecCCCCCCCHH----HHHHHHHHHhhcCCeEEEeecC---ChhhHHH
Q 003557 577 YKQKNMDVLDPNCQPKRSDY-GLPE--DKFIFACFNQLYKMDPE----IFNTWCNILRRVPNSALWLLRF---PAAGEMR 646 (811)
Q Consensus 577 ~~~~~~~~~~~~~~~~r~~~-gl~~--~~~~~~~~~~~~K~~~~----~~~~~~~il~~~p~~~l~l~~~---~~~~~~~ 646 (811)
+.... .........+ .+|. -.+.+|.-++.++.+++ +++...++.+..+ ..++|..+ ++...+.
T Consensus 127 ~~~l~-----~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~vttSRRTp~~~~~~ 200 (311)
T PF06258_consen 127 PERLA-----EAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG-GSLLVTTSRRTPPEAEAA 200 (311)
T ss_pred HHHHH-----HHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC-CeEEEEcCCCCcHHHHHH
Confidence 00000 0000000001 1222 34678888888999887 4455566666777 55655543 2232344
Q ss_pred HHHHHHHcCCCCCce-EEcCCCChHHHHHhcCCCcEEecCCCCCChhH-HHHHHHhCCCcccccCCccccchh
Q 003557 647 LRAYAVAQGVQPDQI-IFTDVAMKQEHIRRSSLADLFLDTPLCNAHTT-GTDILWAGLPMITLPLEKMATRVA 717 (811)
Q Consensus 647 l~~~~~~~gi~~~rv-~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g~~t-~~eal~~g~Pvvt~~g~~~~~r~~ 717 (811)
|++.+. +...+ ++ ...+..-|..++..+|.++=|- -+.+ +.||.+.|+||.++.-+.-.+|+.
T Consensus 201 L~~~~~----~~~~~~~~-~~~~~nPy~~~La~ad~i~VT~---DSvSMvsEA~~tG~pV~v~~l~~~~~r~~ 265 (311)
T PF06258_consen 201 LRELLK----DNPGVYIW-DGTGENPYLGFLAAADAIVVTE---DSVSMVSEAAATGKPVYVLPLPGRSGRFR 265 (311)
T ss_pred HHHhhc----CCCceEEe-cCCCCCcHHHHHHhCCEEEEcC---ccHHHHHHHHHcCCCEEEecCCCcchHHH
Confidence 444333 24566 55 4334444677778899987331 1333 579999999999887665444554
|
The function of this family is unknown. |
| >COG1817 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.059 Score=53.78 Aligned_cols=286 Identities=14% Similarity=0.106 Sum_probs=146.2
Q ss_pred cCCCCCChhHhhHHHHhcccCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCC---H-----------HHHHHHH
Q 003557 432 SSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS---S-----------DMIAKLI 497 (811)
Q Consensus 432 s~~~~~h~~~~~l~~l~~~~d~~~~ev~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------~~~~~~i 497 (811)
+=|..+.|..+|+.+++..+-+.++||.+=+-.. +...+-++..+..+..+..-. . -.+.+.|
T Consensus 4 wiDI~n~~hvhfFk~lI~elekkG~ev~iT~rd~---~~v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki~ 80 (346)
T COG1817 4 WIDIGNPPHVHFFKNLIWELEKKGHEVLITCRDF---GVVTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKII 80 (346)
T ss_pred EEEcCCcchhhHHHHHHHHHHhCCeEEEEEEeec---CcHHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHHH
Confidence 4567777888999999999999899988765322 336787888887777665322 1 2488999
Q ss_pred HhCCCeEEEeCCCCCCCcchhhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCcCCCC----CCccc---eEEcCC
Q 003557 498 NEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAH----IYSEK---LVHVPH 570 (811)
Q Consensus 498 ~~~~~dilv~~~~~~~~~~~~~~~~r~Apvq~~~~g~~~t~g~~~~d~~~~d~~~~p~~~~~----~~~e~---~~~lp~ 570 (811)
.+.++||.+. -|+....--.|.+.. |..+- .-.+..---..+-+=+++.++.|..... .+.++ +...++
T Consensus 81 ~~~kpdv~i~--~~s~~l~rvafgLg~-psIi~-~D~ehA~~qnkl~~Pla~~ii~P~~~~~~~~~~~G~~p~~i~~~~g 156 (346)
T COG1817 81 AEFKPDVAIG--KHSPELPRVAFGLGI-PSIIF-VDNEHAEAQNKLTLPLADVIITPEAIDEEELLDFGADPNKISGYNG 156 (346)
T ss_pred hhcCCceEee--cCCcchhhHHhhcCC-ceEEe-cCChhHHHHhhcchhhhhheecccccchHHHHHhCCCccceecccc
Confidence 9999999985 333221111111110 11110 0000000000011113344455544332 12222 222222
Q ss_pred c-cccCCCccccccCCCCCCCCCcCCCCCCCC--cEEE--EecCCCC-CCCHHHHHHHHHHHhhcCCeEEEeecCChhhH
Q 003557 571 C-YFVNDYKQKNMDVLDPNCQPKRSDYGLPED--KFIF--ACFNQLY-KMDPEIFNTWCNILRRVPNSALWLLRFPAAGE 644 (811)
Q Consensus 571 ~-~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~--~~~~--~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~ 644 (811)
. .+.+.+ .+. |+ +..-.++|+.++ .+|+ ...+..+ +.+.. +.....+++..++--.+++...
T Consensus 157 iae~~~v~----~f~--pd-~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~-~~~~~~li~~l~k~giV~ipr~---- 224 (346)
T COG1817 157 IAELANVY----GFV--PD-PEVLKELGLEEGETYIVMRPEPWGAHYDNGDRG-ISVLPDLIKELKKYGIVLIPRE---- 224 (346)
T ss_pred eeEEeecc----cCC--CC-HHHHHHcCCCCCCceEEEeeccccceeeccccc-hhhHHHHHHHHHhCcEEEecCc----
Confidence 1 111111 122 22 235567999875 3332 2223222 33333 3333444444333223333221
Q ss_pred HHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCccccc-CCccccchhHHHHHh
Q 003557 645 MRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLP-LEKMATRVAGSLCLA 723 (811)
Q Consensus 645 ~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~-g~~~~~r~~~~~l~~ 723 (811)
...++.++. . +++ +...+..|++.++--+|+++ -+|||-.-||...|+|.|.+. |. ..-|+ ..+..
T Consensus 225 ~~~~eife~--~---~n~-i~pk~~vD~l~Llyya~lvi----g~ggTMarEaAlLGtpaIs~~pGk--ll~vd-k~lie 291 (346)
T COG1817 225 KEQAEIFEG--Y---RNI-IIPKKAVDTLSLLYYATLVI----GAGGTMAREAALLGTPAISCYPGK--LLAVD-KYLIE 291 (346)
T ss_pred hhHHHHHhh--h---ccc-cCCcccccHHHHHhhhheee----cCCchHHHHHHHhCCceEEecCCc--ccccc-HHHHh
Confidence 222333332 2 111 22224456666666677775 456888899999999999654 32 11222 45555
Q ss_pred cCCCCccccCCHHHHHHHHHHHhcCHHH
Q 003557 724 TGLGEEMIVNSMKEYEERAVSLALDRQK 751 (811)
Q Consensus 724 ~g~~~~~v~~~~~~y~~~~~~l~~d~~~ 751 (811)
.|+. +-..|+.+-++.|+++..++..
T Consensus 292 ~G~~--~~s~~~~~~~~~a~~~l~~~~~ 317 (346)
T COG1817 292 KGLL--YHSTDEIAIVEYAVRNLKYRRL 317 (346)
T ss_pred cCce--eecCCHHHHHHHHHHHhhchhh
Confidence 5652 2236788889999998877653
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.14 Score=53.86 Aligned_cols=165 Identities=13% Similarity=0.076 Sum_probs=78.7
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHH
Q 003557 147 YYKQAIGCDPRFLEAYNNLGNALKDVGR------------VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 214 (811)
Q Consensus 147 ~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 214 (811)
-+++.++.+|.+.++|..++...-..-. .+.-+.+|++|++.+|++...+..+-....+..+.++..+
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~ 86 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAK 86 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4566667777777777777665443322 2333444555555555444444444444444444444444
Q ss_pred HHHHHHhccCCCchHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 003557 215 YYKATLAVTTGLSAPFNNLAVIYKQ---QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR 291 (811)
Q Consensus 215 ~~~~~l~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 291 (811)
.+++++..+|++...|..+...... .-.+++....|.+++..-... ..............+
T Consensus 87 ~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~----------~~~~~~~~~~~~~~e------ 150 (321)
T PF08424_consen 87 KWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRR----------RSGRMTSHPDLPELE------ 150 (321)
T ss_pred HHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh----------hccccccccchhhHH------
Confidence 4444444444444444333222221 112334444444333210000 000000000000000
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 003557 292 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 327 (811)
Q Consensus 292 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 327 (811)
.....++..+.....+.|..+.|+..++-.++++--
T Consensus 151 ~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 151 EFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 011345667777888899999999999999888643
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0039 Score=40.59 Aligned_cols=32 Identities=41% Similarity=0.615 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 003557 296 EAHANLASAYKDSGHVEAAIKSYKQALLLRPD 327 (811)
Q Consensus 296 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 327 (811)
.+|+.+|.+|..+|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35666677777777777777777777766663
|
... |
| >TIGR00661 MJ1255 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.068 Score=56.50 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=50.5
Q ss_pred CCceEEcCCCChHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCcc-ccchhHHHHHhcCCCC
Q 003557 658 PDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM-ATRVAGSLCLATGLGE 728 (811)
Q Consensus 658 ~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~-~~r~~~~~l~~~g~~~ 728 (811)
+++|.+.++.+ .+....+..||+++. .+|.+|++||+++|+|+|..+-... .....+..+...|+..
T Consensus 228 ~~~v~~~~~~~-~~~~~~l~~ad~vI~---~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~ 295 (321)
T TIGR00661 228 NENVEIRRITT-DNFKELIKNAELVIT---HGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGI 295 (321)
T ss_pred CCCEEEEECCh-HHHHHHHHhCCEEEE---CCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEE
Confidence 46888888655 567777899999984 3567889999999999999886432 3345566777888865
|
This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases. |
| >TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.023 Score=60.80 Aligned_cols=115 Identities=13% Similarity=0.103 Sum_probs=67.3
Q ss_pred CCCCCcEEEEecCC-CCCC-CHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCc-eEEcCCCChHHHH
Q 003557 597 GLPEDKFIFACFNQ-LYKM-DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQ-IIFTDVAMKQEHI 673 (811)
Q Consensus 597 gl~~~~~~~~~~~~-~~K~-~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~r-v~~~~~~~~~~~~ 673 (811)
|+....++++..++ ..|. ..+-+...++.+.. .+..++|+|.+...+..+.+.+.+. ....+ +.+.|..+-.+..
T Consensus 178 ~~~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~-~~~~ivl~g~p~~~e~~~~~~i~~~-~~~~~~~~l~g~~sL~el~ 255 (344)
T TIGR02201 178 GVGQNYIVIQPTSRWFFKCWDNDRFSALIDALHA-RGYEVVLTSGPDKDELAMVNEIAQG-CQTPRVTSLAGKLTLPQLA 255 (344)
T ss_pred CCCCCEEEEeCCCCccccCCCHHHHHHHHHHHHh-CCCeEEEecCCCHHHHHHHHHHHhh-CCCCcccccCCCCCHHHHH
Confidence 45445566665543 2344 33333333322322 2566777775432232333333332 22233 5578988899999
Q ss_pred HhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchh
Q 003557 674 RRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 717 (811)
Q Consensus 674 ~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~ 717 (811)
+.+..+|+++-. -+|+ +==|-++|+|+|++-|.+...+.+
T Consensus 256 ali~~a~l~Vs~--DSGp--~HlAaA~g~p~v~Lfgpt~p~~~~ 295 (344)
T TIGR02201 256 ALIDHARLFIGV--DSVP--MHMAAALGTPLVALFGPSKHIFWR 295 (344)
T ss_pred HHHHhCCEEEec--CCHH--HHHHHHcCCCEEEEECCCCccccc
Confidence 999999999833 2332 334778999999999987776654
|
This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.17 Score=53.84 Aligned_cols=98 Identities=9% Similarity=-0.031 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCC-----CcHHHHHHH
Q 003557 94 AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN---AIAFGNLASTYYERGQADMAILYYKQAIGCDP-----RFLEAYNNL 165 (811)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l 165 (811)
+.+.....+.+.|-+..|+++.+-.+.++|. .-+...+=....+.++++--++.++....... ..+...+..
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 4455566667777777777777777777776 22333333344555666655665555443111 122355677
Q ss_pred HHHHHHcCCH---------------HHHHHHHHHHHhcCCC
Q 003557 166 GNALKDVGRV---------------DEAIQCYNQCLSLQPS 191 (811)
Q Consensus 166 a~~~~~~g~~---------------~~A~~~~~~al~~~p~ 191 (811)
+.++...++- ++|.+.+.+++...|.
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 7777777777 8999999999988876
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PRK10422 lipopolysaccharide core biosynthesis protein; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.026 Score=60.53 Aligned_cols=117 Identities=14% Similarity=0.085 Sum_probs=68.3
Q ss_pred CCCCCCcEEEEecCC-CCCC-CHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHH
Q 003557 596 YGLPEDKFIFACFNQ-LYKM-DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHI 673 (811)
Q Consensus 596 ~gl~~~~~~~~~~~~-~~K~-~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 673 (811)
+|++...++++...+ ..|. .++-+...++.+.. .+..++|+|.+.+.+....+.+.+..-....+.+.|..+-.+..
T Consensus 179 ~~~~~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~-~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ 257 (352)
T PRK10422 179 LGVTQNYVVIQPTARQIFKCWDNDKFSAVIDALQA-RGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELG 257 (352)
T ss_pred cCCCCCeEEEecCCCccccCCCHHHHHHHHHHHHH-CCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHH
Confidence 345555555554442 3455 33444444444433 25667777654321222223333321112346688988999999
Q ss_pred HhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchh
Q 003557 674 RRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 717 (811)
Q Consensus 674 ~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~ 717 (811)
+.+..+|+||- .-+|++-+ |-++|+|+|++-|++...+.+
T Consensus 258 ali~~a~l~v~--nDSGp~Hl--AaA~g~P~v~lfGpt~p~~~~ 297 (352)
T PRK10422 258 ALIDHAQLFIG--VDSAPAHI--AAAVNTPLICLFGATDHIFWR 297 (352)
T ss_pred HHHHhCCEEEe--cCCHHHHH--HHHcCCCEEEEECCCCccccC
Confidence 99999999982 23333333 557899999999998877665
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.38 Score=52.56 Aligned_cols=192 Identities=14% Similarity=0.148 Sum_probs=106.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCChh-----HHHhHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHH
Q 003557 96 LNLGNVYKALGMPQEAIMCYQRAVQTRPNAI-----AFGNLASTYYERGQADMAILYYKQAIGC--DPRFLEAYNNLGNA 168 (811)
Q Consensus 96 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~ 168 (811)
..++..+.-.|++.+|.+.|.+.-..+...+ -.+.+++-+...|.-++-..+.++-.+. +-+.+ ...+..
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP---kaAAEm 712 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP---KAAAEM 712 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc---HHHHHH
Confidence 3456666667777777777765432222111 1233455555555555544444432211 11122 223556
Q ss_pred HHHcCCHHHHHHHH----------HHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 003557 169 LKDVGRVDEAIQCY----------NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYK 238 (811)
Q Consensus 169 ~~~~g~~~~A~~~~----------~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 238 (811)
+...|+.++|+.+. +-+-+++..+-+.+..++..+.....+.-|.+.|+++-. ...+..++.
T Consensus 713 LiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHv 784 (1081)
T KOG1538|consen 713 LISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHV 784 (1081)
T ss_pred hhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhhee
Confidence 66777777776543 122223344445556666666666666666666665432 223455666
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHH
Q 003557 239 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY 318 (811)
Q Consensus 239 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 318 (811)
..+++.+|..+-++.-+.- .+.++..|+-+.+..++++|.+.|.+ .|+..+|...+
T Consensus 785 e~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhk---------------------AGr~~EA~~vL 840 (1081)
T KOG1538|consen 785 ETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHK---------------------AGRQREAVQVL 840 (1081)
T ss_pred ecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHH---------------------hcchHHHHHHH
Confidence 7778888777665533322 34677777777888888887765544 46677777777
Q ss_pred HHHH
Q 003557 319 KQAL 322 (811)
Q Consensus 319 ~~al 322 (811)
++.-
T Consensus 841 eQLt 844 (1081)
T KOG1538|consen 841 EQLT 844 (1081)
T ss_pred HHhh
Confidence 7654
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.12 Score=54.85 Aligned_cols=161 Identities=15% Similarity=0.115 Sum_probs=99.5
Q ss_pred HHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHH-----HH--HHHHHHcCChHHHHHHHHHHHhccC
Q 003557 152 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALT-----NL--GNIYMEWNMLPAAASYYKATLAVTT 224 (811)
Q Consensus 152 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-----~l--a~~~~~~g~~~~A~~~~~~~l~~~~ 224 (811)
++.+|-+.+++..++.++..+|+.+.|.+++++++-.......... +. |.+...-. .+
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~---------------~~ 97 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYR---------------RP 97 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCc---------------cc
Confidence 4567888888888888888888888888888877643211000000 00 00000000 11
Q ss_pred CCc---hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHH-HHHHHHHHhCCHHHHHHHHHHHHhcCC-----Cc
Q 003557 225 GLS---APFNNLAVIYKQQGNYADAISCYNEVLRIDPL-AADGLV-NRGNTYKEIGRVTDAIQDYIRAITIRP-----TM 294 (811)
Q Consensus 225 ~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~p-----~~ 294 (811)
.|. .+.+.....+.+.|-+..|+++.+-.+.++|. |+-... .+-....+.++++--++.++....... .-
T Consensus 98 eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~l 177 (360)
T PF04910_consen 98 ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLL 177 (360)
T ss_pred cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhC
Confidence 121 23445567777888888888888888888887 665433 333444566777766666666544211 12
Q ss_pred HHHHHHHHHHHHhCCCH---------------HHHHHHHHHHHhcCCC
Q 003557 295 AEAHANLASAYKDSGHV---------------EAAIKSYKQALLLRPD 327 (811)
Q Consensus 295 ~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p~ 327 (811)
+...+..+.++...++. ++|.+.+++|+...|.
T Consensus 178 Pn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 178 PNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred ccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 34667778888888877 8888888888888764
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.21 E-value=1.3 Score=52.64 Aligned_cols=92 Identities=16% Similarity=0.117 Sum_probs=67.6
Q ss_pred CCCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 003557 2 RKGRLNEAAQCCRQALALNPLL---VDAHSNLGNLMKAQ----G---LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES 71 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 71 (811)
..+.|+.|+..|+++-..-|.. .++.+..|..+..+ | .+++|+..|++.- -.|.-+--|...|.+|.++
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 565 (932)
T PRK13184 487 AEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVYQRL 565 (932)
T ss_pred hhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHh
Confidence 3467888888888888777664 45667777766543 2 3666777776643 3456677788888888999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHH
Q 003557 72 GDLNRALQYYKEAVKLKPTFPDA 94 (811)
Q Consensus 72 g~~~~A~~~~~~al~~~p~~~~~ 94 (811)
|++++-++.|.-+++..|+.|..
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 566 GEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred hhHHHHHHHHHHHHHhcCCCCcc
Confidence 99999999999999988887763
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.009 Score=38.83 Aligned_cols=32 Identities=22% Similarity=0.592 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 003557 262 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 293 (811)
Q Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 293 (811)
.+|+.+|.++..+|++++|++.|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35666666666666666666666666666653
|
... |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=1.6 Score=46.29 Aligned_cols=123 Identities=13% Similarity=0.021 Sum_probs=103.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 003557 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 81 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 81 (811)
..|+...|-+.+..+++..|.++......+.+....|+|+.+...+..+-..-.....+...+-......|++++|....
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 45788888888889999999999988899999999999999999887665544444456666777788899999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 003557 82 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124 (811)
Q Consensus 82 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 124 (811)
.-++...-+++++...-+-.....|-++++..++++.+.++|.
T Consensus 381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 9999887788887777777778889999999999999998775
|
|
| >TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.035 Score=59.16 Aligned_cols=116 Identities=10% Similarity=0.010 Sum_probs=68.4
Q ss_pred CCCCCCCC--cEEEEecCC--CCCC-CHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCC
Q 003557 594 SDYGLPED--KFIFACFNQ--LYKM-DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAM 668 (811)
Q Consensus 594 ~~~gl~~~--~~~~~~~~~--~~K~-~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~ 668 (811)
..++++.+ .++|...++ ..|. ..+-+....+.+.. .+..++|.|.+.+ ++...+.... .....+.+.|..+
T Consensus 166 ~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~-~~~~ivl~G~~~e-~~~~~~i~~~--~~~~~~~l~g~~s 241 (334)
T TIGR02195 166 AKFGLDTERPIIAFCPGAEFGPAKRWPHEHYAELAKRLID-QGYQVVLFGSAKD-HPAGNEIEAL--LPGELRNLAGETS 241 (334)
T ss_pred HHcCCCCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHH-CCCEEEEEEChhh-HHHHHHHHHh--CCcccccCCCCCC
Confidence 44566532 344444342 3455 43344333433333 3466777776533 4333333222 3223345889888
Q ss_pred hHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchh
Q 003557 669 KQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 717 (811)
Q Consensus 669 ~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~ 717 (811)
-.+..+.+..+|+++-. -+|+ +==|-++|+|+|++-|.+...+.+
T Consensus 242 L~el~ali~~a~l~I~~--DSGp--~HlAaA~~~P~i~lfG~t~p~~~~ 286 (334)
T TIGR02195 242 LDEAVDLIALAKAVVTN--DSGL--MHVAAALNRPLVALYGSTSPDFTP 286 (334)
T ss_pred HHHHHHHHHhCCEEEee--CCHH--HHHHHHcCCCEEEEECCCChhhcC
Confidence 89999999999999822 2232 234668999999999998877654
|
This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. |
| >cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS) | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.11 Score=53.75 Aligned_cols=96 Identities=19% Similarity=0.101 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCChhHH
Q 003557 615 DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTG 694 (811)
Q Consensus 615 ~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g~~t~ 694 (811)
..+.+....+.+... +..+++.|.+.+ ++..++.....+- ..-+.+.|..+..+..+.+..+|+++.+- +|. +
T Consensus 138 ~~~~~~~l~~~l~~~-~~~ivl~g~~~e-~~~~~~i~~~~~~-~~~~~~~~~~~l~e~~~li~~~~l~I~~D--sg~--~ 210 (279)
T cd03789 138 PAERFAALADRLLAR-GARVVLTGGPAE-RELAEEIAAALGG-PRVVNLAGKTSLRELAALLARADLVVTND--SGP--M 210 (279)
T ss_pred CHHHHHHHHHHHHHC-CCEEEEEechhh-HHHHHHHHHhcCC-CccccCcCCCCHHHHHHHHHhCCEEEeeC--CHH--H
Confidence 334444444444433 677778775433 4444444444332 23456788778899999999999998442 222 2
Q ss_pred HHHHHhCCCcccccCCccccchh
Q 003557 695 TDILWAGLPMITLPLEKMATRVA 717 (811)
Q Consensus 695 ~eal~~g~Pvvt~~g~~~~~r~~ 717 (811)
-=|.++|+|+|++-|.+...+.+
T Consensus 211 HlA~a~~~p~i~l~g~~~~~~~~ 233 (279)
T cd03789 211 HLAAALGTPTVALFGPTDPARTG 233 (279)
T ss_pred HHHHHcCCCEEEEECCCCccccC
Confidence 23358899999999988887754
|
Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.05 Score=58.27 Aligned_cols=111 Identities=6% Similarity=-0.111 Sum_probs=66.6
Q ss_pred CcEEEEecCC--CCCC-CHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCC-CCc-eEEcCCCChHHHHHh
Q 003557 601 DKFIFACFNQ--LYKM-DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQ-PDQ-IIFTDVAMKQEHIRR 675 (811)
Q Consensus 601 ~~~~~~~~~~--~~K~-~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~-~~r-v~~~~~~~~~~~~~~ 675 (811)
..++|...++ ..|. .++-+...++-+.. .+..+++.|.+.+ ++...+..+..+-. ..+ +.+.|..+-.+..+.
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~-~~~~vvl~Gg~~e-~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~al 258 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLID-EGYQVVLFGSAKD-HEAGNEILAALNTEQQAWCRNLAGETQLEQAVIL 258 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHH-CCCeEEEEeCHHh-HHHHHHHHHhcccccccceeeccCCCCHHHHHHH
Confidence 3455655443 3455 44444444433332 3566777775433 44344433333211 122 567788888999999
Q ss_pred cCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchh
Q 003557 676 SSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 717 (811)
Q Consensus 676 ~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~ 717 (811)
+..+|+++-. -+|+ +==|-++|+|+|++-|.+...+.+
T Consensus 259 i~~a~l~I~n--DTGp--~HlAaA~g~P~valfGpt~p~~~~ 296 (348)
T PRK10916 259 IAACKAIVTN--DSGL--MHVAAALNRPLVALYGPSSPDFTP 296 (348)
T ss_pred HHhCCEEEec--CChH--HHHHHHhCCCEEEEECCCCccccC
Confidence 9999999822 2232 334778999999999988776554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.0086 Score=39.58 Aligned_cols=27 Identities=44% Similarity=0.647 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 003557 298 HANLASAYKDSGHVEAAIKSYKQALLL 324 (811)
Q Consensus 298 ~~~la~~~~~~g~~~~A~~~~~~al~~ 324 (811)
+.+||.+|.+.|++++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556666666666666666666664433
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.014 Score=37.47 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 003557 297 AHANLASAYKDSGHVEAAIKSYKQALLLRPD 327 (811)
Q Consensus 297 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 327 (811)
+++.+|.++.+.|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555666666666666666666666666554
|
|
| >COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.33 Score=47.92 Aligned_cols=139 Identities=15% Similarity=0.063 Sum_probs=81.6
Q ss_pred EEEecCCC-CCCCHHHHHHHHHHHhhcC-CeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcE
Q 003557 604 IFACFNQL-YKMDPEIFNTWCNILRRVP-NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADL 681 (811)
Q Consensus 604 ~~~~~~~~-~K~~~~~~~~~~~il~~~p-~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv 681 (811)
++.|++-. .|+. ++++.+ .|.+.+ |.+++ +|.+......+++..++ ..++.+.- +..+.-.++..+|.
T Consensus 161 ilI~lGGsDpk~l--t~kvl~-~L~~~~~nl~iV-~gs~~p~l~~l~k~~~~----~~~i~~~~--~~~dma~LMke~d~ 230 (318)
T COG3980 161 ILITLGGSDPKNL--TLKVLA-ELEQKNVNLHIV-VGSSNPTLKNLRKRAEK----YPNINLYI--DTNDMAELMKEADL 230 (318)
T ss_pred EEEEccCCChhhh--HHHHHH-HhhccCeeEEEE-ecCCCcchhHHHHHHhh----CCCeeeEe--cchhHHHHHHhcch
Confidence 55555533 3432 333333 344555 44444 45433336677777776 35555554 23344445688888
Q ss_pred EecCCCCCChhHHHHHHHhCCC--cccccCCccccchhHHHHHhcCCCCccc-cCCHHHHHHHHHHHhcCHHHHHHHHHH
Q 003557 682 FLDTPLCNAHTTGTDILWAGLP--MITLPLEKMATRVAGSLCLATGLGEEMI-VNSMKEYEERAVSLALDRQKLQALTNK 758 (811)
Q Consensus 682 ~ld~~~~~g~~t~~eal~~g~P--vvt~~g~~~~~r~~~~~l~~~g~~~~~v-~~~~~~y~~~~~~l~~d~~~~~~~~~~ 758 (811)
.+ ..||.|+.||+..|+| ||++.-..- .++.-+.++|..-.+= .-.+......+.++.+|+.+|..+...
T Consensus 231 aI----~AaGstlyEa~~lgvP~l~l~~a~NQ~---~~a~~f~~lg~~~~l~~~l~~~~~~~~~~~i~~d~~~rk~l~~~ 303 (318)
T COG3980 231 AI----SAAGSTLYEALLLGVPSLVLPLAENQI---ATAKEFEALGIIKQLGYHLKDLAKDYEILQIQKDYARRKNLSFG 303 (318)
T ss_pred he----eccchHHHHHHHhcCCceEEeeeccHH---HHHHHHHhcCchhhccCCCchHHHHHHHHHhhhCHHHhhhhhhc
Confidence 87 6789999999999999 554432211 1234566666644221 134556666788999999998877664
Q ss_pred H
Q 003557 759 L 759 (811)
Q Consensus 759 ~ 759 (811)
.
T Consensus 304 ~ 304 (318)
T COG3980 304 S 304 (318)
T ss_pred c
Confidence 4
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.035 Score=54.82 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=62.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 003557 267 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLH 337 (811)
Q Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 337 (811)
.+.-..+.|+.++|..+|+.++.+.|++++++..+|......++.-+|-.+|-+++.++|.+.+++.|...
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 34445678999999999999999999999999999999999999999999999999999999988766543
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.67 E-value=1.1 Score=48.66 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC---C----CCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCC
Q 003557 231 NNLAVIYKQQGNYADAISCYNEVLRID---P----LAADGLVNRGNTYKEIGR-VTDAIQDYIRAITIRP 292 (811)
Q Consensus 231 ~~la~~~~~~g~~~~A~~~~~~al~~~---p----~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p 292 (811)
..+|.++...|+...|..+|+..++.. . -.+.+++.+|..+..+|. ..++.+++.+|-+...
T Consensus 453 lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 453 LLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 344666666666666666666555321 1 124566777777777666 7777777777766553
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.84 Score=50.03 Aligned_cols=230 Identities=15% Similarity=0.092 Sum_probs=134.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--
Q 003557 27 HSNLGNLMKAQGLVQEAYSCYLEALRI--------------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT-- 90 (811)
Q Consensus 27 ~~~l~~~~~~~g~~~~A~~~~~~al~~--------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 90 (811)
|..++......=+++-|.+.|.+.-.+ ....+. -..++..+.-.|++.+|.++|.+.=..+..
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlE 666 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKRSGHENRALE 666 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHHcCchhhHHH
Confidence 455555555556666666666554221 111111 234677777788888888888764211100
Q ss_pred --CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHH----------HHHHHcCCCc
Q 003557 91 --FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYY----------KQAIGCDPRF 158 (811)
Q Consensus 91 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~----------~~al~~~p~~ 158 (811)
..--.+.+++-+...|..++-..+.++--+-..+..--..-+..+...|+.++|+... +-+-+++...
T Consensus 667 myTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~e 746 (1081)
T KOG1538|consen 667 MYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAE 746 (1081)
T ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhh
Confidence 0001233444455555544443333332221111111112355666777777777643 2222445555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 003557 159 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYK 238 (811)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 238 (811)
.+.+..++..+..+..+.-|.++|+++-. ...+..+..+.+++.+|..+.++.-+.- ...|+-.|..+.
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcccc---ccccchHHHHhh
Confidence 66777777777788888888888876532 2345667788899999988877654433 346777888888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003557 239 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 289 (811)
Q Consensus 239 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (811)
+..++++|.+.|-+ .|+..+|...+++.-.
T Consensus 816 E~DrFeEAqkAfhk---------------------AGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHK---------------------AGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhHHHHHHHHHH---------------------hcchHHHHHHHHHhhh
Confidence 99999998776654 4677778877777543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.023 Score=36.48 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003557 26 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 56 (811)
Q Consensus 26 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 56 (811)
+++.+|.++.+.|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455555555555666666666555555554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.49 E-value=1.5 Score=40.17 Aligned_cols=118 Identities=16% Similarity=0.106 Sum_probs=60.0
Q ss_pred HcCCHHHHHHHHHHHHhcCCCC-H-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChh-----HHHhHHHHHHHcCCHH
Q 003557 70 ESGDLNRALQYYKEAVKLKPTF-P-DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI-----AFGNLASTYYERGQAD 142 (811)
Q Consensus 70 ~~g~~~~A~~~~~~al~~~p~~-~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~la~~~~~~g~~~ 142 (811)
+.++.++|+..|...-+.+-.. + -+....+.+....|+...|+..|.++-...+.+. +...-+.++...|.|+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3455556666665555443222 1 1445555566666666666666666655443322 2233344455556665
Q ss_pred HHHHHHHHHH-HcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003557 143 MAILYYKQAI-GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 187 (811)
Q Consensus 143 ~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 187 (811)
+.....+.+- ..+|-...+...||..-++.|++.+|.+.|.++..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5544444332 22333344455555566666666666666655544
|
|
| >KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.22 Score=56.31 Aligned_cols=148 Identities=13% Similarity=0.237 Sum_probs=91.8
Q ss_pred CcEEEEecCCCC---CCCHHHHHHHHHHHhhcCCeE-EEeecCChhhHHHHHHHHHHcCC---CCCceEEcCCCChHHHH
Q 003557 601 DKFIFACFNQLY---KMDPEIFNTWCNILRRVPNSA-LWLLRFPAAGEMRLRAYAVAQGV---QPDQIIFTDVAMKQEHI 673 (811)
Q Consensus 601 ~~~~~~~~~~~~---K~~~~~~~~~~~il~~~p~~~-l~l~~~~~~~~~~l~~~~~~~gi---~~~rv~~~~~~~~~~~~ 673 (811)
..+||.||+... .+.++.....+..+...|+.. +|....... .. + ..|+ +...|++.++.|..+.+
T Consensus 277 ~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~-~~-~-----~~~~~~~~~~nV~~~~W~PQ~~ll 349 (496)
T KOG1192|consen 277 HSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPDDS-IY-F-----PEGLPNRGRGNVVLSKWAPQNDLL 349 (496)
T ss_pred CCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCCcc-hh-h-----hhcCCCCCcCceEEecCCCcHHHh
Confidence 368888888776 799999999999999887665 676654322 11 1 1233 13458999999999977
Q ss_pred HhcCCCcEEecCCCCCChhHHHHHHHhCCCccccc--CCccccchhHHHHHhcCCCCccccC--CHHHHHHHHHHHhcCH
Q 003557 674 RRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLP--LEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLALDR 749 (811)
Q Consensus 674 ~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~--g~~~~~r~~~~~l~~~g~~~~~v~~--~~~~y~~~~~~l~~d~ 749 (811)
.....+..|+ .++|=++++|+++.|||+|+++ |+.+.. +-.+..-|...-++-. +..+..+.+..+..++
T Consensus 350 l~H~~v~~Fv---THgG~nSt~E~~~~GvP~v~~Plf~DQ~~N---a~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~~ 423 (496)
T KOG1192|consen 350 LDHPAVGGFV---THGGWNSTLESIYSGVPMVCVPLFGDQPLN---ARLLVRHGGGGVLDKRDLVSEELLEAIKEILENE 423 (496)
T ss_pred cCCCcCcEEE---ECCcccHHHHHHhcCCceecCCccccchhH---HHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcCh
Confidence 2333355554 5677777899999999998553 444322 2223333332201111 2222556666677777
Q ss_pred HHHHHHHHHHHh
Q 003557 750 QKLQALTNKLKS 761 (811)
Q Consensus 750 ~~~~~~~~~~~~ 761 (811)
+.....++-...
T Consensus 424 ~y~~~~~~l~~~ 435 (496)
T KOG1192|consen 424 EYKEAAKRLSEI 435 (496)
T ss_pred HHHHHHHHHHHH
Confidence 777766665543
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=95.44 E-value=8 Score=46.38 Aligned_cols=57 Identities=11% Similarity=-0.126 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 003557 5 RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 62 (811)
Q Consensus 5 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 62 (811)
.+++|+..|++.. ..|.-+--|...+.+|.+.|++++-+++|.-+++..|+.+..-.
T Consensus 534 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 534 DFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred HHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence 4777888888763 45777788999999999999999999999999999998865433
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.44 E-value=6.5 Score=45.00 Aligned_cols=224 Identities=13% Similarity=0.078 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHH
Q 003557 7 NEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM---ESGDLNRALQYYKE 83 (811)
Q Consensus 7 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~ 83 (811)
++=+..++.-+..++.+...+..|..++.+.|++++-...-.++.++.|..+..|..-..-.. ..++-.++...|++
T Consensus 96 ~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ek 175 (881)
T KOG0128|consen 96 NQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEK 175 (881)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHH
Confidence 344555666667788888899999999999999999888888888889998888877665433 23677788888999
Q ss_pred HHhcCCCCHHHHHHHHHHH-------HHcCChHHHHHHHHHHHhhCC-----C---hhHHHhHHHHHHHcCCHHHHHHHH
Q 003557 84 AVKLKPTFPDAYLNLGNVY-------KALGMPQEAIMCYQRAVQTRP-----N---AIAFGNLASTYYERGQADMAILYY 148 (811)
Q Consensus 84 al~~~p~~~~~~~~la~~~-------~~~g~~~~A~~~~~~al~~~p-----~---~~~~~~la~~~~~~g~~~~A~~~~ 148 (811)
++.-. +.+..|...+... ...++++.-...|.+++..-. . ...+..+-..|...-..++-+.++
T Consensus 176 al~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~ 254 (881)
T KOG0128|consen 176 ALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALF 254 (881)
T ss_pred Hhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 88643 3344444444433 445677888889998887521 1 445556666666666667777888
Q ss_pred HHHHHcCCCcHHH----HHHHH---HHHHHcCCHHHHHHHHHHHH-------hcCCCChHHHHHHHHHHHHcCChHHHHH
Q 003557 149 KQAIGCDPRFLEA----YNNLG---NALKDVGRVDEAIQCYNQCL-------SLQPSHPQALTNLGNIYMEWNMLPAAAS 214 (811)
Q Consensus 149 ~~al~~~p~~~~~----~~~la---~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~la~~~~~~g~~~~A~~ 214 (811)
...+... -+.++ |.... .......+++.|.+.+.+.+ ...+.-...|..+.......|..-.-..
T Consensus 255 ~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l 333 (881)
T KOG0128|consen 255 VRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQL 333 (881)
T ss_pred HHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 7777654 22111 11111 11123345555555544433 3333334456666677777777776666
Q ss_pred HHHHHHhccCCCchHHHH
Q 003557 215 YYKATLAVTTGLSAPFNN 232 (811)
Q Consensus 215 ~~~~~l~~~~~~~~~~~~ 232 (811)
.++++....+.+...|..
T Consensus 334 ~~eR~~~E~~~~~~~wi~ 351 (881)
T KOG0128|consen 334 IEERAVAEMVLDRALWIG 351 (881)
T ss_pred HHHHHHHhccccHHHHhh
Confidence 677766555544444433
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=6.9 Score=45.29 Aligned_cols=314 Identities=13% Similarity=-0.022 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 003557 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 80 (811)
Q Consensus 1 l~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 80 (811)
++.|++..+.+...++ +..|-.+..-+.....-.....++ .+...++.+|+.+..-..........++-..--.+
T Consensus 44 ~~~g~~~~~~~~~~~l-~d~pL~~yl~y~~L~~~l~~~~~~----ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~ 118 (644)
T PRK11619 44 WDNRQMDVVEQLMPTL-KDYPLYPYLEYRQLTQDLMNQPAV----QVTNFIRANPTLPPARSLQSRFVNELARREDWRGL 118 (644)
T ss_pred HHCCCHHHHHHHHHhc-cCCCcHhHHHHHHHHhccccCCHH----HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHH
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Q 003557 81 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL 159 (811)
Q Consensus 81 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 159 (811)
.. .....|.+......++......|+.++|.....++-..... +.....+-..+.+.|........-+--+....++.
T Consensus 119 ~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~ 197 (644)
T PRK11619 119 LA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNT 197 (644)
T ss_pred HH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHH--------HHhcCCCChHHH-HHHHHHHHHcCChHHHHHHHHHHHhccCCCchH
Q 003557 160 EAYNNLGNAL-KDVGRVDEAIQCYNQ--------CLSLQPSHPQAL-TNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP 229 (811)
Q Consensus 160 ~~~~~la~~~-~~~g~~~~A~~~~~~--------al~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 229 (811)
.....+...+ ......-++...+.+ .....++....- ..++..-....+.+.|...+.+......-+...
T Consensus 198 ~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~ 277 (644)
T PRK11619 198 GLVTYLAKQLPADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQ 277 (644)
T ss_pred HHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHH
Q ss_pred ----HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 003557 230 ----FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAY 305 (811)
Q Consensus 230 ----~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 305 (811)
...++.-....+...+|...+..+.... .+.+..-....+....++++.+...+..+-....+.....+.+|..+
T Consensus 278 ~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~ 356 (644)
T PRK11619 278 RQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLL 356 (644)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHH
Q ss_pred HhCCCHHHHHHHHHHH
Q 003557 306 KDSGHVEAAIKSYKQA 321 (811)
Q Consensus 306 ~~~g~~~~A~~~~~~a 321 (811)
...|+.++|..+|+++
T Consensus 357 ~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 357 LEQGRKAEAEEILRQL 372 (644)
T ss_pred HHcCCHHHHHHHHHHH
|
|
| >PRK02797 4-alpha-L-fucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.42 Score=48.36 Aligned_cols=163 Identities=12% Similarity=0.063 Sum_probs=95.6
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEe-ecCChhh---HHHHHHHHHHcCCCCCceEEc-CCCChHHHHHhcC
Q 003557 603 FIFACFNQLYKMDPEIFNTWCNILRRVPNSALWL-LRFPAAG---EMRLRAYAVAQGVQPDQIIFT-DVAMKQEHIRRSS 677 (811)
Q Consensus 603 ~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l-~~~~~~~---~~~l~~~~~~~gi~~~rv~~~-~~~~~~~~~~~~~ 677 (811)
+.+|+-+-..-.|-+.++...+.. ..+.++++ +|-|+.. .+++++...+..- ++++..+ ...+.+||++.++
T Consensus 149 IlvGNSgd~SN~Hie~L~~l~~~~--~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~-~~~~~~L~e~l~f~eYl~lL~ 225 (322)
T PRK02797 149 ILVGNSGDRSNRHIEALRALHQQF--GDNVKIIVPMGYPANNQAYIEEVRQAGLALFG-AENFQILTEKLPFDDYLALLR 225 (322)
T ss_pred EEEeCCCCCcccHHHHHHHHHHHh--CCCeEEEEECCcCCCCHHHHHHHHHHHHHhcC-cccEEehhhhCCHHHHHHHHH
Confidence 445655555566666666655443 34455544 4654322 2455555555543 4676554 5889999999999
Q ss_pred CCcEEecCC-CCCChhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHH
Q 003557 678 LADLFLDTP-LCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALT 756 (811)
Q Consensus 678 ~~Dv~ld~~-~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~~~~~y~~~~~~l~~d~~~~~~~~ 756 (811)
.||+...-+ .--|--|+|=.+.+|+||+...-.++- ..|...|+|= +...+ ..-...+ .+..+++.
T Consensus 226 ~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~n~fw-----qdl~e~gv~V-lf~~d--~L~~~~v-----~e~~rql~ 292 (322)
T PRK02797 226 QCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRDNPFW-----QDLTEQGLPV-LFTGD--DLDEDIV-----REAQRQLA 292 (322)
T ss_pred hCCEEEEeechhhHHhHHHHHHHCCCcEEEecCCchH-----HHHHhCCCeE-EecCC--cccHHHH-----HHHHHHHH
Confidence 999999886 445556778899999999966544433 4566678865 43222 2110111 11222233
Q ss_pred HHHHhhcccCCCCChHHHHHHHHHHHHHH
Q 003557 757 NKLKSVRLTCPLFDTARWVKNLERSYFKM 785 (811)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~e~~y~~~ 785 (811)
..-++.+ .|..+.+++.+.++|..+
T Consensus 293 ~~dk~~I----~Ff~pn~~~~W~~~l~~~ 317 (322)
T PRK02797 293 SVDKNII----AFFSPNYLQGWRNALAIA 317 (322)
T ss_pred hhCccee----eecCHhHHHHHHHHHHHh
Confidence 3223332 388888777777776543
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.05 Score=53.76 Aligned_cols=69 Identities=25% Similarity=0.365 Sum_probs=58.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 003557 235 VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 303 (811)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 303 (811)
.-..+.|+.++|..+|+.++.+.|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+.
T Consensus 124 ~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 124 GRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 334577888999999999999999999999999988888888889999999999999988888776554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.16 E-value=2.3 Score=38.92 Aligned_cols=141 Identities=13% Similarity=0.091 Sum_probs=99.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CH--HHHHHHHHHH
Q 003557 29 NLGNLMKAQGLVQEAYSCYLEALRIQPTF--AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT--FP--DAYLNLGNVY 102 (811)
Q Consensus 29 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~--~~~~~la~~~ 102 (811)
.-+.-+.+.+..++|+..|...-+..-.. ..+....+.+..+.|+...|+..|..+-+..+- -. -+...-+.++
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lL 142 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLL 142 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHH
Confidence 34555667788889998888876654332 456777888999999999999999998765432 11 2455566778
Q ss_pred HHcCChHHHHHHHHHHHhh-CCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 003557 103 KALGMPQEAIMCYQRAVQT-RPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALK 170 (811)
Q Consensus 103 ~~~g~~~~A~~~~~~al~~-~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 170 (811)
...|.|++-....+.+-.. +|- ..+...||..-++.|++.+|.+.|.+... +...+....+.+.+.+
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 8889998877666544322 333 66777899999999999999999999876 4344444455555443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.4 Score=43.60 Aligned_cols=83 Identities=23% Similarity=0.172 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003557 26 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 105 (811)
Q Consensus 26 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 105 (811)
.+......-...++.+++..++..+--+.|+.+..-..-|.++...|++.+|+.+++.+....|..+.+--.++.|+..+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 44455555566677777777777777777777777777777777777777777777777777777777777777777666
Q ss_pred CCh
Q 003557 106 GMP 108 (811)
Q Consensus 106 g~~ 108 (811)
|+.
T Consensus 92 ~D~ 94 (160)
T PF09613_consen 92 GDP 94 (160)
T ss_pred CCh
Confidence 654
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.08 E-value=6.1 Score=42.60 Aligned_cols=318 Identities=15% Similarity=0.132 Sum_probs=185.6
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-----------c
Q 003557 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGL-VQEAYSCYLEALRIQPTFAIAWSNLAGLFME-----------S 71 (811)
Q Consensus 4 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----------~ 71 (811)
+.+.+--.+|.+++..+|++++.|..-+.-.+..+. .+.|..+|.+.++.+|+++..|...-.+-.. .
T Consensus 119 ~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~ 198 (568)
T KOG2396|consen 119 KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYAEKLRNRREEL 198 (568)
T ss_pred cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457788899999999999999999999988888776 9999999999999999997766543322110 0
Q ss_pred C----CHHH-------H----------------------HH-----------HHHHHHhcCCCCHHHHHHHHHHHHHc--
Q 003557 72 G----DLNR-------A----------------------LQ-----------YYKEAVKLKPTFPDAYLNLGNVYKAL-- 105 (811)
Q Consensus 72 g----~~~~-------A----------------------~~-----------~~~~al~~~p~~~~~~~~la~~~~~~-- 105 (811)
| +-++ + .. .++......|.++..|..++.-...-
T Consensus 199 g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~~~np~~~~~laqr~l~i~~ 278 (568)
T KOG2396|consen 199 GLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKAPDNPLLWDDLAQRELEILS 278 (568)
T ss_pred ccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHH
Confidence 0 0000 0 00 00011112455555555444322110
Q ss_pred -----------------CChHHHHHHHHHHHhhCCChhHHHhHHHHHH---Hc--C-CHHHHHHHHHHHHH---cCCCcH
Q 003557 106 -----------------GMPQEAIMCYQRAVQTRPNAIAFGNLASTYY---ER--G-QADMAILYYKQAIG---CDPRFL 159 (811)
Q Consensus 106 -----------------g~~~~A~~~~~~al~~~p~~~~~~~la~~~~---~~--g-~~~~A~~~~~~al~---~~p~~~ 159 (811)
-+-+....+|+.+++.-+....+......+. .. | ....-...++++.+ ..+...
T Consensus 279 ~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~ 358 (568)
T KOG2396|consen 279 QTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLY 358 (568)
T ss_pred HhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchH
Confidence 0112344566666666555333322222221 11 1 33444555555553 345555
Q ss_pred HHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCChHHHHHHHHHHH--------------------------------Hc
Q 003557 160 EAYNNLGNALKDVGRVDEAIQ-CYNQCLSLQPSHPQALTNLGNIYM--------------------------------EW 206 (811)
Q Consensus 160 ~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~la~~~~--------------------------------~~ 206 (811)
.-|..+..++.....-.++.. .....+. ++...|........ ..
T Consensus 359 ~~ys~~~l~~~t~~~~r~~a~~l~~e~f~---~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~ 435 (568)
T KOG2396|consen 359 KQYSVLLLCLNTLNEAREVAVKLTTELFR---DSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASE 435 (568)
T ss_pred HHHHHHHHHHhccchHhHHHHHhhHHHhc---chHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhh
Confidence 566666666655544333222 2112211 11111111111111 01
Q ss_pred CC-hHHHHH--HHHHHHhc-cCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--CCHHHH
Q 003557 207 NM-LPAAAS--YYKATLAV-TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI--GRVTDA 280 (811)
Q Consensus 207 g~-~~~A~~--~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A 280 (811)
++ ...... .+..+... .++....-..+-..+.+.|-+.+|...|.+...+.|-+...+..+.+.-..+ -+...+
T Consensus 436 ~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~ 515 (568)
T KOG2396|consen 436 GDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANI 515 (568)
T ss_pred ccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHH
Confidence 11 111111 11111111 2344444556677788899999999999999999988888777766554332 347888
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 003557 281 IQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL 324 (811)
Q Consensus 281 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 324 (811)
.++|+.++.....+++.|...-..-...|..+.+-..|.+|.+.
T Consensus 516 r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 516 REYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 99999999888899999999888888999999999999888764
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.07 E-value=4.6 Score=41.18 Aligned_cols=166 Identities=16% Similarity=0.081 Sum_probs=106.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC--ChHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-----CCCchH-
Q 003557 162 YNNLGNALKDVGRVDEAIQCYNQCLSL----QPS--HPQALTNLGNIYMEWNMLPAAASYYKATLAVT-----TGLSAP- 229 (811)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----~~~~~~- 229 (811)
-..++.+|...++|.+|+......+.. +.+ -.+++..-...|....+..+|...+..+-... |....+
T Consensus 131 earli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~ 210 (411)
T KOG1463|consen 131 EARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQAT 210 (411)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHH
Confidence 345778888888999888877766542 211 23456666777888888888887776665332 211111
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHH---HHHHHHHHHHHhCCHHHHHHHH--HHHHhcCCCcHHHHHH
Q 003557 230 -FNNLAVIYKQQGNYADAISCYNEVLRIDP---LAAD---GLVNRGNTYKEIGRVTDAIQDY--IRAITIRPTMAEAHAN 300 (811)
Q Consensus 230 -~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~---~~~~la~~~~~~g~~~~A~~~~--~~al~~~p~~~~~~~~ 300 (811)
-..-|.++....+|.-|..+|-++++-.. ++.. ++..+-.+-...+..++-...+ +.+++....+.++...
T Consensus 211 lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amka 290 (411)
T KOG1463|consen 211 LDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKA 290 (411)
T ss_pred HHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHH
Confidence 11225556666889999999998887532 2233 3333344444556666544444 4566666777888888
Q ss_pred HHHHHHh--CCCHHHHHHHHHHHHhcCCC
Q 003557 301 LASAYKD--SGHVEAAIKSYKQALLLRPD 327 (811)
Q Consensus 301 la~~~~~--~g~~~~A~~~~~~al~~~p~ 327 (811)
.+.++.+ +.+|+.|+.-|+.-+..+|-
T Consensus 291 vAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 291 VAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 8888866 45888898888888776653
|
|
| >PRK10117 trehalose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.37 Score=52.63 Aligned_cols=186 Identities=15% Similarity=0.107 Sum_probs=117.4
Q ss_pred CcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhcCC----eEEEeecCChhh----HHHHHHHHH--------H
Q 003557 592 KRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPN----SALWLLRFPAAG----EMRLRAYAV--------A 653 (811)
Q Consensus 592 ~r~~~gl~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~l~~~~~~~----~~~l~~~~~--------~ 653 (811)
+|+.++ +..++.++-|+. |+.+.=+.+|.+.|++.|+ .+|+-++.++-. -.+++..+. +
T Consensus 248 lr~~~~---~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~ 324 (474)
T PRK10117 248 LKAELK---NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGK 324 (474)
T ss_pred HHHHcC---CCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhc
Confidence 444443 455777788884 9999999999999999986 456555533210 123333322 2
Q ss_pred cCCCCCc-eEEcC-CCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCcc
Q 003557 654 QGVQPDQ-IIFTD-VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEM 730 (811)
Q Consensus 654 ~gi~~~r-v~~~~-~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~ 730 (811)
.|-..-. |.+.. ..++.+.+++|..+||+|-|+.--| ..++-|-.++--|= -+|--.-|+.+++- . -|++.+
T Consensus 325 fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~--~~GvLILSefAGaA-~--~L~~Al 399 (474)
T PRK10117 325 YGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPA--NPGVLVLSQFAGAA-N--ELTSAL 399 (474)
T ss_pred cCCCCceeEEEecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecCC--CCccEEEecccchH-H--HhCCCe
Confidence 3431112 66655 4688999999999999999988888 89999999886530 11111123333111 0 112213
Q ss_pred cc--CCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHH
Q 003557 731 IV--NSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 788 (811)
Q Consensus 731 v~--~~~~~y~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 788 (811)
+. .|.++.++.+.+-.+ .++.|..-.+.+++.+.. +|...+++.+-.....+..+
T Consensus 400 lVNP~d~~~~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~~---~dv~~W~~~fL~~L~~~~~~ 457 (474)
T PRK10117 400 IVNPYDRDEVAAALDRALTMPLAERISRHAEMLDVIVK---NDINHWQECFISDLKQIVPR 457 (474)
T ss_pred EECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh---CCHHHHHHHHHHHHHHhhhc
Confidence 33 477777765544333 677777777777777654 79999999988877766544
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.16 Score=51.24 Aligned_cols=70 Identities=11% Similarity=0.023 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHH
Q 003557 263 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 332 (811)
Q Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 332 (811)
.+.++-.+|.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|..-++..++..|+++.+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 5566777888888888888888888888888888888888888888888888888888888888887654
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.23 Score=40.85 Aligned_cols=64 Identities=22% Similarity=0.257 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC--hHHHHHHHHHhhhcCC
Q 003557 281 IQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF--PEATCNLLHTLQCVCS 344 (811)
Q Consensus 281 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~ 344 (811)
+..+++.++.+|++..+.+.++..+...|++++|++.+-.+++.++++ ..+...++.++..+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 445566666666666666666666666677777766666666666554 3344444444443333
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.42 Score=43.46 Aligned_cols=79 Identities=18% Similarity=0.063 Sum_probs=47.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCH
Q 003557 233 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHV 311 (811)
Q Consensus 233 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 311 (811)
+..+-...++.+++..++..+--+.|+.++.-..-|+++...|++.+|+..++.+.+..|..+.+.-.++.|+..+|+.
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 3344445556666666666666666666666666666666666666666666666655666665555666666555553
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.37 Score=39.62 Aligned_cols=42 Identities=29% Similarity=0.269 Sum_probs=17.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 003557 47 YLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 88 (811)
Q Consensus 47 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 88 (811)
+++.+..+|++..+.+.++..+...|++++|++.+-.+++.+
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 334444444444444444444444444444444444444443
|
|
| >PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.31 Score=53.82 Aligned_cols=173 Identities=17% Similarity=0.199 Sum_probs=94.4
Q ss_pred CcEEEEecCCCC--CCCHHHHHHHHHHHhhcCC----eEEEeecCChhh--------HHHHHHHHH----HcCCCC-Cce
Q 003557 601 DKFIFACFNQLY--KMDPEIFNTWCNILRRVPN----SALWLLRFPAAG--------EMRLRAYAV----AQGVQP-DQI 661 (811)
Q Consensus 601 ~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~l~~~~~~~--------~~~l~~~~~----~~gi~~-~rv 661 (811)
+..++.++-|+. |+.+.-+.+|.++|++.|+ .+|+-++.++.. +..+.+.+. +.|-.. .-|
T Consensus 275 ~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI 354 (474)
T PF00982_consen 275 KRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPI 354 (474)
T ss_dssp -SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SE
T ss_pred CcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeE
Confidence 347778888774 9999999999999999986 455555432110 122222222 345311 125
Q ss_pred EEcC-CCChHHHHHhcCCCcEEecCCCCCC-hhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCc-cc--cCCHH
Q 003557 662 IFTD-VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEE-MI--VNSMK 736 (811)
Q Consensus 662 ~~~~-~~~~~~~~~~~~~~Dv~ld~~~~~g-~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~-~v--~~~~~ 736 (811)
++.. ..+.++.+++|..+||+|.|+.-.| .+++.|-.++-.+ -+|...-|..+++. -.|.+. ++ ..|.+
T Consensus 355 ~~~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~---~~GvLiLSefaGaa---~~L~~~al~VNP~d~~ 428 (474)
T PF00982_consen 355 IYIYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDD---NPGVLILSEFAGAA---EQLSEAALLVNPWDIE 428 (474)
T ss_dssp EEE-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-T---S--EEEEETTBGGG---GT-TTS-EEE-TT-HH
T ss_pred EEEecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecC---CCCceEeeccCCHH---HHcCCccEEECCCChH
Confidence 5555 5788999999999999999999999 9999999999876 22222223333210 023321 12 23667
Q ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 003557 737 EYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 782 (811)
Q Consensus 737 ~y~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 782 (811)
+.++++.+-.+ .++.|+...+.+++.+.. +|...+++.+-...
T Consensus 429 ~~A~ai~~AL~M~~~Er~~r~~~~~~~v~~---~~~~~W~~~~l~~L 472 (474)
T PF00982_consen 429 EVADAIHEALTMPPEERKERHARLREYVRE---HDVQWWAESFLRDL 472 (474)
T ss_dssp HHHHHHHHHHT--HHHHHHHHHHHHHHHHH---T-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhHh---CCHHHHHHHHHHHh
Confidence 76655444333 677777777777777755 78888887766544
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B. |
| >PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long) | Back alignment and domain information |
|---|
Probab=94.86 E-value=1.3 Score=45.71 Aligned_cols=119 Identities=9% Similarity=-0.062 Sum_probs=78.6
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHhhcCCeEEEe-ecCChhh---HHHHHHHHHHcCCCCCceEE-cCCCChHHHHHhc
Q 003557 602 KFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWL-LRFPAAG---EMRLRAYAVAQGVQPDQIIF-TDVAMKQEHIRRS 676 (811)
Q Consensus 602 ~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l-~~~~~~~---~~~l~~~~~~~gi~~~rv~~-~~~~~~~~~~~~~ 676 (811)
.+.+|+-+...-.|-+.++...+-. ..+.++++ +|-|... .+++.+...++.- .+++.. ....+.+||++.+
T Consensus 187 tILvGNSgd~sNnHieaL~~L~~~~--~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~-~~~~~iL~e~mpf~eYl~lL 263 (360)
T PF07429_consen 187 TILVGNSGDPSNNHIEALEALKQQF--GDDVKIIVPLSYGANNQAYIQQVIQAGKELFG-AENFQILTEFMPFDEYLALL 263 (360)
T ss_pred EEEEcCCCCCCccHHHHHHHHHHhc--CCCeEEEEECCCCCchHHHHHHHHHHHHHhcC-ccceeEhhhhCCHHHHHHHH
Confidence 4667776666677777776544422 23455544 4555321 3455555555533 356654 5688999999999
Q ss_pred CCCcEEecCC-CCCChhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCC
Q 003557 677 SLADLFLDTP-LCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGE 728 (811)
Q Consensus 677 ~~~Dv~ld~~-~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~ 728 (811)
..||+....+ .--|--|++=.+++|+||+...-.++ ...|...|+|=
T Consensus 264 ~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~~np~-----~~~l~~~~ipV 311 (360)
T PF07429_consen 264 SRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSRDNPF-----WQDLKEQGIPV 311 (360)
T ss_pred HhCCEEEEeechhhhHhHHHHHHHcCCeEEEecCChH-----HHHHHhCCCeE
Confidence 9999999886 44555678889999999997654333 35666778865
|
This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.091 Score=38.00 Aligned_cols=36 Identities=25% Similarity=0.182 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCChHHH
Q 003557 297 AHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 332 (811)
Q Consensus 297 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 332 (811)
.++.+|..+.+.|++++|.++.+.+++..|+|..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 467778888888888888888888888888876653
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.79 E-value=2.9 Score=45.65 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHhh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003557 5 RLNEAAQCCRQALAL------------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 51 (811)
Q Consensus 5 ~~~~A~~~~~~~l~~------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 51 (811)
.|++|...|.-+... .|-+.+.+..++.+...+|+.+-|..+.++++
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L 311 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGL 311 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 455666666555432 24455666666666666666666655555543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=94.79 E-value=4.5 Score=43.57 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003557 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120 (811)
Q Consensus 58 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 120 (811)
..+++.++++|.+. ..++-...+++..+.+-++...-..|+..|.+ ++.+++..+|.+++.
T Consensus 99 kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 99 KMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHH
Confidence 34455555555554 33444445555555544444444444444444 445555555555543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.054 Score=35.71 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=11.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 003557 27 HSNLGNLMKAQGLVQEAYSCYLE 49 (811)
Q Consensus 27 ~~~l~~~~~~~g~~~~A~~~~~~ 49 (811)
+..+|.+|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455555555555555555555
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.28 Score=49.60 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=60.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 003557 230 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302 (811)
Q Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 302 (811)
..++-.+|.+.++++.|+.+.+.++...|+++.-+...|.+|.++|.+..|...++..++..|+++.+-....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 4566777888888888888888888888888888888888888888888888888888888888876554433
|
|
| >TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.19 Score=53.01 Aligned_cols=109 Identities=16% Similarity=-0.006 Sum_probs=64.2
Q ss_pred CCcEEEEecC-CCCCC-CHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcC
Q 003557 600 EDKFIFACFN-QLYKM-DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS 677 (811)
Q Consensus 600 ~~~~~~~~~~-~~~K~-~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 677 (811)
...++++..+ ...|. .++-+....+-+... +..++|.++++..++...+.... + + ...+.|..+-.+..+.+.
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~-~~~~vl~~g~~~e~~~~~~i~~~--~-~-~~~l~g~~sL~el~ali~ 253 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLAR-GLQIVLPWGNDAEKQRAERIAEA--L-P-GAVVLPKMSLAEVAALLA 253 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHC-CCeEEEeCCCHHHHHHHHHHHhh--C-C-CCeecCCCCHHHHHHHHH
Confidence 4456666554 33455 333333333333222 45666665454423333333332 2 1 235778888899999999
Q ss_pred CCcEEecCCCCCChhHHHHHHHhCCCcccccCCccccchh
Q 003557 678 LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 717 (811)
Q Consensus 678 ~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~ 717 (811)
.||+++-. -+|++- =|-++|+|+|++-|.+...+.+
T Consensus 254 ~a~l~I~~--DSgp~H--lAaa~g~P~i~lfg~t~p~~~~ 289 (319)
T TIGR02193 254 GADAVVGV--DTGLTH--LAAALDKPTVTLYGATDPGRTG 289 (319)
T ss_pred cCCEEEeC--CChHHH--HHHHcCCCEEEEECCCCHhhcc
Confidence 99999832 233333 3557799999999998887765
|
This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.16 Score=36.78 Aligned_cols=37 Identities=22% Similarity=0.011 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 003557 26 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 62 (811)
Q Consensus 26 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 62 (811)
.++.++..+++.|+|++|..+.+.+++.+|+|..+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4555666666666666666666666666666654443
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.32 Score=41.01 Aligned_cols=27 Identities=11% Similarity=-0.080 Sum_probs=15.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 003557 31 GNLMKAQGLVQEAYSCYLEALRIQPTF 57 (811)
Q Consensus 31 ~~~~~~~g~~~~A~~~~~~al~~~p~~ 57 (811)
+..++..|++-+|+++.+..+...+++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~ 29 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGED 29 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCC
Confidence 344555666666666666665555444
|
|
| >PRK14089 ipid-A-disaccharide synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.18 Score=53.23 Aligned_cols=131 Identities=11% Similarity=0.096 Sum_probs=72.6
Q ss_pred CCCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHcCCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCChh
Q 003557 613 KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHT 692 (811)
Q Consensus 613 K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g~~ 692 (811)
++.|.+++++.++.++. .++++.+.. . .+.+++..... ..+.|.+ + -...++.+|++| ..+||
T Consensus 183 ~llP~~~~aa~~L~~~~--~~~~i~~a~-~-~~~i~~~~~~~----~~~~~~~--~---~~~~m~~aDlal----~~SGT 245 (347)
T PRK14089 183 RLMPIFKELAKKLEGKE--KILVVPSFF-K-GKDLKEIYGDI----SEFEISY--D---THKALLEAEFAF----ICSGT 245 (347)
T ss_pred HHHHHHHHHHHHHhhcC--cEEEEeCCC-c-HHHHHHHHhcC----CCcEEec--c---HHHHHHhhhHHH----hcCcH
Confidence 56788888888877653 455555443 2 34555544321 1334444 2 234568899988 55678
Q ss_pred HHHHHHHhCCCcccccCCccccchhHHHHH---hcCCCCcccc----------------CCHHHHHHHHHHHhcCHHHHH
Q 003557 693 TGTDILWAGLPMITLPLEKMATRVAGSLCL---ATGLGEEMIV----------------NSMKEYEERAVSLALDRQKLQ 753 (811)
Q Consensus 693 t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~---~~g~~~~~v~----------------~~~~~y~~~~~~l~~d~~~~~ 753 (811)
+|+|++.+|+|.|...-...-+..-+..|. .+|++. +++ -+++...+.+.++ +++...
T Consensus 246 ~TLE~al~g~P~Vv~Yk~~~lty~iak~lv~~~~igL~N-ii~~~~~~~~vvPEllQ~~~t~~~la~~i~~~--~~~~~~ 322 (347)
T PRK14089 246 ATLEAALIGTPFVLAYKAKAIDYFIAKMFVKLKHIGLAN-IFFDFLGKEPLHPELLQEFVTVENLLKAYKEM--DREKFF 322 (347)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHHHHHHcCCeeehHH-HhcCCCcccccCchhhcccCCHHHHHHHHHHH--HHHHHH
Confidence 888999999998863321112211123333 345554 442 2466666666552 344444
Q ss_pred HHHHHHHhhc
Q 003557 754 ALTNKLKSVR 763 (811)
Q Consensus 754 ~~~~~~~~~~ 763 (811)
+....+++..
T Consensus 323 ~~~~~l~~~l 332 (347)
T PRK14089 323 KKSKELREYL 332 (347)
T ss_pred HHHHHHHHHh
Confidence 4555555544
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.32 Score=41.02 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 003557 279 DAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL 324 (811)
Q Consensus 279 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 324 (811)
.+++.|.++..+.|..+..++.+|.-+....-|+++..-.++++..
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3566777777777777777777776666666666666666666544
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.60 E-value=5.3 Score=39.65 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHcCCHHHH
Q 003557 28 SNLGNLMKAQGLVQEAYSCYLEALRIQP--------TFAIAWSNLAGLFMESGDLNRA 77 (811)
Q Consensus 28 ~~l~~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A 77 (811)
..+++-..+.+++++|+..|.+.+...- +...+...++.+|...|++..-
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 3455556666777777777777665411 1134556666677766665443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.56 Score=49.47 Aligned_cols=127 Identities=11% Similarity=0.061 Sum_probs=100.4
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHH
Q 003557 169 LKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 248 (811)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (811)
....|+.-.|-.-+..++...|.+|......+.+....|.|+.+...+..+-..-.....+...+-....+.|++++|..
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34568888888888888888888888888888888889999988888877665555555556666777778888999988
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcH
Q 003557 249 CYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMA 295 (811)
Q Consensus 249 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 295 (811)
.-+-++...-++++.....+.....+|-++++..++++.+.++|...
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 88888877777777777777777788888899999998888876543
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=94.56 E-value=3.2 Score=42.00 Aligned_cols=156 Identities=15% Similarity=0.110 Sum_probs=78.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHH-
Q 003557 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI-----QPTFAIAWSNLAGLFMESGDLN- 75 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~- 75 (811)
++++|++|++++... +..+.+.|++..|.++..-.++. .+.+......++.+....+.-+
T Consensus 2 ~~kky~eAidLL~~G--------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p 67 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG--------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEP 67 (260)
T ss_dssp HTT-HHHHHHHHHHH--------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-T
T ss_pred ccccHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcc
Confidence 567888888777665 33455555555555544443332 2333344455555555444322
Q ss_pred HHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHH
Q 003557 76 RALQYYKEAVKLK------PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYK 149 (811)
Q Consensus 76 ~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~ 149 (811)
+-.++.+++++.. -.++..+..+|..|.+.|++.+|..+|-..- +++..++..+....
T Consensus 68 ~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~--~~~~~~~~~ll~~~-------------- 131 (260)
T PF04190_consen 68 ERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT--DPSAFAYVMLLEEW-------------- 131 (260)
T ss_dssp THHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS---HHHHHHHHHHHHHH--------------
T ss_pred hHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC--ChhHHHHHHHHHHH--------------
Confidence 2334444444432 2467788999999999998888887774331 11111111111111
Q ss_pred HHHHcCCCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhc
Q 003557 150 QAIGCDPRFLEAYNNLGN-ALKDVGRVDEAIQCYNQCLSL 188 (811)
Q Consensus 150 ~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~ 188 (811)
..+..|...+.+...+. -|...++...|...+....+.
T Consensus 132 -~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 132 -STKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -HHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred -HHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 12334444445444443 366778888888877666654
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.49 E-value=6.5 Score=40.17 Aligned_cols=174 Identities=13% Similarity=0.122 Sum_probs=99.3
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHHc----C--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCChH--H
Q 003557 129 GNLASTYYERGQADMAILYYKQAIGC----D--PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-----PSHPQ--A 195 (811)
Q Consensus 129 ~~la~~~~~~g~~~~A~~~~~~al~~----~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~--~ 195 (811)
..+...|...++|.+|+......+.. + +.-.+++..-...|....+..+|...+..+-... |.... .
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 35677777778888777776665521 1 2233445555666777777777777666554321 11111 1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhccCC---CchH---HHHHHHHHHHcCCHHHHHHH--HHHHHhcCCCCHHHHHHH
Q 003557 196 LTNLGNIYMEWNMLPAAASYYKATLAVTTG---LSAP---FNNLAVIYKQQGNYADAISC--YNEVLRIDPLAADGLVNR 267 (811)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~---~~~la~~~~~~g~~~~A~~~--~~~al~~~p~~~~~~~~l 267 (811)
-..-|.++....+|.-|..+|-++++-... +..+ +..+..+-...+..++--.+ -+.+++....+.++....
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav 291 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV 291 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence 122244455557777787777777765321 1222 22222333344555544333 345566667778888888
Q ss_pred HHHHHH--hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 003557 268 GNTYKE--IGRVTDAIQDYIRAITIRPTMAEAHANLASAY 305 (811)
Q Consensus 268 a~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 305 (811)
+..+.+ +.+|+.|+..|+.-+..+|- +...+..+|
T Consensus 292 AeA~~nRSLkdF~~AL~~yk~eL~~D~i---vr~Hl~~Ly 328 (411)
T KOG1463|consen 292 AEAFGNRSLKDFEKALADYKKELAEDPI---VRSHLQSLY 328 (411)
T ss_pred HHHhcCCcHHHHHHHHHHhHHHHhcChH---HHHHHHHHH
Confidence 888765 46788888888887776653 444444443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.11 E-value=1.9 Score=47.28 Aligned_cols=102 Identities=19% Similarity=0.209 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCC
Q 003557 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQ 140 (811)
Q Consensus 61 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~ 140 (811)
...++..+.+.|..+.|+... .+++..+.| ..+.|+.+.|.+..++. ++...|..||.....+|+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeL---Al~lg~L~~A~~~a~~~----~~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFV--------TDPDHRFEL---ALQLGNLDIALEIAKEL----DDPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHH---HHHCT-HHHHHHHCCCC----STHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHCCCHHHHHhhc--------CChHHHhHH---HHhcCCHHHHHHHHHhc----CcHHHHHHHHHHHHHcCC
Confidence 444444555555555554432 123333332 23455555555443211 234455566666666666
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003557 141 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQC 185 (811)
Q Consensus 141 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 185 (811)
++-|.++|+++- -+..+..+|...|+.+.-.++.+.+
T Consensus 363 ~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 363 IELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHH
Confidence 666655555531 1233444455555544444444333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.02 E-value=7.1 Score=38.81 Aligned_cols=265 Identities=16% Similarity=0.116 Sum_probs=153.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHH---hhC--CC-hhH
Q 003557 62 SNLAGLFMESGDLNRALQYYKEAVKLKPT--------FPDAYLNLGNVYKALGMPQEAIMCYQRAV---QTR--PN-AIA 127 (811)
Q Consensus 62 ~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~--p~-~~~ 127 (811)
..+++-..+.+++++|+..|.+.+...-. ...+...++.+|...|++..--+...... ... |. ...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 55677778899999999999999876321 22367889999999998865444433322 221 11 222
Q ss_pred HHhHHHHH-HHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChH
Q 003557 128 FGNLASTY-YERGQADMAILYYKQAIGCDPRF------LEAYNNLGNALKDVGRVDEAIQCYNQCLSL------QPSHPQ 194 (811)
Q Consensus 128 ~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 194 (811)
...+..-+ .....++.-+..+...++..... ...-..++.++++.|+|.+|+....-.+.. .++-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 22222222 12234555555555555432211 123356778889999999999887766542 133345
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcc-----CCCchHHH--HHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHH
Q 003557 195 ALTNLGNIYMEWNMLPAAASYYKATLAVT-----TGLSAPFN--NLAVIYKQQGNYADAISCYNEVLRIDP---LAADGL 264 (811)
Q Consensus 195 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~ 264 (811)
++..-..+|....+..++...+..+-... |....+.. .-|..++...+|.-|..+|-++++-.. .+..+.
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc 246 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC 246 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence 67777788888888888777776554332 22222221 225556677789999999988887532 233333
Q ss_pred HHHHHH---HHHhCCHHHHHHHHH--HHHh-cCCCcHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhcCC
Q 003557 265 VNRGNT---YKEIGRVTDAIQDYI--RAIT-IRPTMAEAHANLASAYKD--SGHVEAAIKSYKQALLLRP 326 (811)
Q Consensus 265 ~~la~~---~~~~g~~~~A~~~~~--~al~-~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p 326 (811)
..+-.. -...+..++-...+. ..++ .+....++....+..+.. +.++..|+..|+.-+..+|
T Consensus 247 ~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 247 VSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 222211 122333443333332 2222 234445566666666643 4577788887777665544
|
|
| >PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.072 Score=50.12 Aligned_cols=93 Identities=20% Similarity=0.195 Sum_probs=58.9
Q ss_pred CceEEcCCCC-hHHHHHhcCCCcEEecCCCCCChhHHHHHHHhCCCcccccCCcc---ccchhHHHHHhcCCCCcccc--
Q 003557 659 DQIIFTDVAM-KQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM---ATRVAGSLCLATGLGEEMIV-- 732 (811)
Q Consensus 659 ~rv~~~~~~~-~~~~~~~~~~~Dv~ld~~~~~g~~t~~eal~~g~Pvvt~~g~~~---~~r~~~~~l~~~g~~~~~v~-- 732 (811)
.+|.+.+..+ ..+++ ..+|+++ ..+|+.|+.|++++|+|.|..+-... ....-+..+...|..- .+.
T Consensus 55 ~~v~~~~~~~~m~~~m---~~aDlvI---s~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~-~~~~~ 127 (167)
T PF04101_consen 55 PNVKVFGFVDNMAELM---AAADLVI---SHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAI-MLDES 127 (167)
T ss_dssp CCCEEECSSSSHHHHH---HHHSEEE---ECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCC-CSECC
T ss_pred CcEEEEechhhHHHHH---HHcCEEE---eCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCcc-ccCcc
Confidence 5788888765 44555 6699987 35677899999999999988765551 1222334566667655 332
Q ss_pred -CCHHHHHHHHHHHhcCHHHHHHHHHH
Q 003557 733 -NSMKEYEERAVSLALDRQKLQALTNK 758 (811)
Q Consensus 733 -~~~~~y~~~~~~l~~d~~~~~~~~~~ 758 (811)
.+++...+.+..+..++..+..+.+.
T Consensus 128 ~~~~~~L~~~i~~l~~~~~~~~~~~~~ 154 (167)
T PF04101_consen 128 ELNPEELAEAIEELLSDPEKLKEMAKA 154 (167)
T ss_dssp C-SCCCHHHHHHCHCCCHH-SHHHCCC
T ss_pred cCCHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 23567888888888888886665544
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.086 Score=33.00 Aligned_cols=31 Identities=39% Similarity=0.589 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 003557 297 AHANLASAYKDSGHVEAAIKSYKQALLLRPD 327 (811)
Q Consensus 297 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 327 (811)
++..+|.++...|++++|...++++++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4455566666666666666666666555543
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PRK10017 colanic acid biosynthesis protein; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=1.3 Score=48.40 Aligned_cols=92 Identities=15% Similarity=0.115 Sum_probs=66.2
Q ss_pred CCceEE-cCCCChHHHHHhcCCCcEEecC-CCCCChhHHHHHHHhCCCcccccCCccccchhHHHHHhcCCCCccccC--
Q 003557 658 PDQIIF-TDVAMKQEHIRRSSLADLFLDT-PLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN-- 733 (811)
Q Consensus 658 ~~rv~~-~~~~~~~~~~~~~~~~Dv~ld~-~~~~g~~t~~eal~~g~Pvvt~~g~~~~~r~~~~~l~~~g~~~~~v~~-- 733 (811)
++++++ .+..+..+....+..||+++-+ ++ +++=|+.+|||+|.+. -+.=..+++..+|+++ ++.+
T Consensus 306 ~~~~~vi~~~~~~~e~~~iIs~~dl~ig~RlH-----a~I~a~~~gvP~i~i~----Y~~K~~~~~~~lg~~~-~~~~~~ 375 (426)
T PRK10017 306 PARYHVVMDELNDLEMGKILGACELTVGTRLH-----SAIISMNFGTPAIAIN----YEHKSAGIMQQLGLPE-MAIDIR 375 (426)
T ss_pred ccceeEecCCCChHHHHHHHhhCCEEEEecch-----HHHHHHHcCCCEEEee----ehHHHHHHHHHcCCcc-EEechh
Confidence 455443 3333456888889999999866 34 7889999999999776 3555568999999999 7443
Q ss_pred --CHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 003557 734 --SMKEYEERAVSLALDRQKLQALTNKLKSV 762 (811)
Q Consensus 734 --~~~~y~~~~~~l~~d~~~~~~~~~~~~~~ 762 (811)
+.++.++.+.++..|.+. ++++++++
T Consensus 376 ~l~~~~Li~~v~~~~~~r~~---~~~~l~~~ 403 (426)
T PRK10017 376 HLLDGSLQAMVADTLGQLPA---LNARLAEA 403 (426)
T ss_pred hCCHHHHHHHHHHHHhCHHH---HHHHHHHH
Confidence 567888888888877654 44444443
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=93.85 E-value=2 Score=36.56 Aligned_cols=85 Identities=21% Similarity=0.274 Sum_probs=41.1
Q ss_pred HcCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-------cCCCcHH---
Q 003557 239 QQGNYADAISCYNEVLRIDPL------------AADGLVNRGNTYKEIGRVTDAIQDYIRAIT-------IRPTMAE--- 296 (811)
Q Consensus 239 ~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~--- 296 (811)
..|-|++|...+.++++.... +.-++..++..+..+|+|++++..-++++. ++.+...
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 445556666555555544211 122455556666666666665555444442 2333332
Q ss_pred -HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 003557 297 -AHANLASAYKDSGHVEAAIKSYKQALL 323 (811)
Q Consensus 297 -~~~~la~~~~~~g~~~~A~~~~~~al~ 323 (811)
+.++.+..+...|+.++|+..|+.+-+
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 223445555556666666665555543
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.58 Score=45.67 Aligned_cols=87 Identities=16% Similarity=0.185 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHhc----C-C--CCHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHhcC--C----CcHHHHHH
Q 003557 241 GNYADAISCYNEVLRI----D-P--LAADGLVNRGNTYKEIGRVT-------DAIQDYIRAITIR--P----TMAEAHAN 300 (811)
Q Consensus 241 g~~~~A~~~~~~al~~----~-p--~~~~~~~~la~~~~~~g~~~-------~A~~~~~~al~~~--p----~~~~~~~~ 300 (811)
..+++|++.|.-++-. . + .-+..+..+|++|...|+.+ .|.+.|+++++.. | +...+.+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 3455565555555422 1 1 11446677777777777744 4555555555442 2 23567888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 003557 301 LASAYKDSGHVEAAIKSYKQALLLRPD 327 (811)
Q Consensus 301 la~~~~~~g~~~~A~~~~~~al~~~p~ 327 (811)
+|.++.+.|++++|.++|.+++...-.
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999976443
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.73 E-value=2.9 Score=45.90 Aligned_cols=127 Identities=21% Similarity=0.189 Sum_probs=76.4
Q ss_pred HHHHHHHHHhcCCCChHHHHH--HHHHHHHcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHcCCHHHHHHHHHH-HH
Q 003557 178 AIQCYNQCLSLQPSHPQALTN--LGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE-VL 254 (811)
Q Consensus 178 A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al 254 (811)
++..+...+..++.+++.+.. +...+...+....+...+...+..+|.+...+.+|+......|....+...+.+ +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444555665554332 344555556666666666666667777777777776666666655555554444 55
Q ss_pred hcCCCCHHHHHH------HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 003557 255 RIDPLAADGLVN------RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASA 304 (811)
Q Consensus 255 ~~~p~~~~~~~~------la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 304 (811)
...|.+...... ++.....+|+..++....+++....|.++.+...+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 556666554333 36667777777777777777777777776555554444
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.71 E-value=7.7 Score=39.32 Aligned_cols=141 Identities=18% Similarity=0.122 Sum_probs=80.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHH
Q 003557 31 GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQE 110 (811)
Q Consensus 31 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 110 (811)
-....+..+..+-++....+++++|+.+.+|..++.- ...-..+|.+.++++++.. +..+...+.....|...+
T Consensus 191 MQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~----e~~yr~sqq~qh~~~~~d 264 (556)
T KOG3807|consen 191 MQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAG----ETIYRQSQQCQHQSPQHE 264 (556)
T ss_pred HHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHH----HHHHhhHHHHhhhccchh
Confidence 3344455666667777777888888887777777653 2334567777777777653 222222222222222222
Q ss_pred HHHHHHHHHhhCCC--hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003557 111 AIMCYQRAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF--LEAYNNLGNALKDVGRVDEAIQCYN 183 (811)
Q Consensus 111 A~~~~~~al~~~p~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~ 183 (811)
| ..+.+.+ ......++.+..++|+..+|++.++...+..|-. ..+.-++...+....-|.+....+-
T Consensus 265 a------~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 265 A------QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred h------hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2233333 3445567888888888888888888877666632 1234455555555555544444433
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.22 Score=47.47 Aligned_cols=60 Identities=25% Similarity=0.361 Sum_probs=41.0
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCh
Q 003557 270 TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 329 (811)
Q Consensus 270 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 329 (811)
...+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|.+.|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 344556666677777777777777777777777777777777777777777777776654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.69 E-value=1.4 Score=39.50 Aligned_cols=83 Identities=12% Similarity=-0.006 Sum_probs=66.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 003557 27 HSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 106 (811)
Q Consensus 27 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 106 (811)
+......-...++.+++..++..+--+.|+.+..-..-|.++...|++.+|+..++...+..+..+...-.++.|+..+|
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 33444444557888888888888888888888888888888899999999999999888888777877788888888888
Q ss_pred ChH
Q 003557 107 MPQ 109 (811)
Q Consensus 107 ~~~ 109 (811)
+.+
T Consensus 93 Dp~ 95 (153)
T TIGR02561 93 DAE 95 (153)
T ss_pred ChH
Confidence 754
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=93.56 E-value=3 Score=35.53 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH
Q 003557 94 AYLNLGNVYKALGMPQEAIMCYQRA 118 (811)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~a 118 (811)
.+..|+..+..+|+|++++...+++
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~a 81 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRA 81 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3444555555555555554444333
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.54 E-value=1.2 Score=42.09 Aligned_cols=94 Identities=21% Similarity=0.084 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----hhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHH----HHH
Q 003557 94 AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIAFGNLASTYYERGQADMAILYYKQAIGCDP--RFLE----AYN 163 (811)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~----~~~ 163 (811)
++..+|..|.+.|+.++|++.|.++.+...+ ...+..+..+....+++.....+..++-..-. .+.+ ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 5667777777777777777777776665433 55566666777777777777777666653321 1221 122
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 003557 164 NLGNALKDVGRVDEAIQCYNQCLS 187 (811)
Q Consensus 164 ~la~~~~~~g~~~~A~~~~~~al~ 187 (811)
.-|..+...++|.+|.+.|-.+..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCc
Confidence 234445556677777776665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.7 Score=40.29 Aligned_cols=92 Identities=11% Similarity=0.004 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHh-cCCCc-HHHHHHHHHHHHhCCCHHHHH
Q 003557 241 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI---GRVTDAIQDYIRAIT-IRPTM-AEAHANLASAYKDSGHVEAAI 315 (811)
Q Consensus 241 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~~A~ 315 (811)
++.-...+.+...-....-.....+++++++... .+..+.+.+++..++ -.|.. -+..+.|+..+.+.|+|++++
T Consensus 12 ~d~~~~~e~~~rq~a~~~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~ 91 (149)
T KOG3364|consen 12 EDLIAGQEEILRQAARSDVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSL 91 (149)
T ss_pred hhhhHHHHHHHHHHHhccchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHH
Q ss_pred HHHHHHHhcCCCChHHH
Q 003557 316 KSYKQALLLRPDFPEAT 332 (811)
Q Consensus 316 ~~~~~al~~~p~~~~~~ 332 (811)
.+.+..++..|+|..+.
T Consensus 92 ~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 92 RYVDALLETEPNNRQAL 108 (149)
T ss_pred HHHHHHHhhCCCcHHHH
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.41 E-value=14 Score=40.09 Aligned_cols=96 Identities=11% Similarity=0.093 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 003557 91 FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALK 170 (811)
Q Consensus 91 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 170 (811)
+...+..+..++....++.-....+.+++....+..++..++.+|... ..++-...+++..+.+-++...-..++..|.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yE 143 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYE 143 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 334445555555555555556666677777666666777777777766 4455666667777666666656666666555
Q ss_pred HcCCHHHHHHHHHHHHhc
Q 003557 171 DVGRVDEAIQCYNQCLSL 188 (811)
Q Consensus 171 ~~g~~~~A~~~~~~al~~ 188 (811)
+ ++-+++..+|.+++..
T Consensus 144 k-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 144 K-IKKSKAAEFFGKALYR 160 (711)
T ss_pred H-hchhhHHHHHHHHHHH
Confidence 5 6667777777776653
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.40 E-value=3.6 Score=36.93 Aligned_cols=73 Identities=14% Similarity=0.063 Sum_probs=44.7
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCH
Q 003557 239 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHV 311 (811)
Q Consensus 239 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 311 (811)
..++.+++..++..+--+.|+.++.-..-|.++...|++.+|+..++...+..+..+...-.++.|+.-+|+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 3556666666666655556666666666666666666666666666666665555555555566666666654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.86 Score=54.56 Aligned_cols=172 Identities=20% Similarity=0.161 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCCHHHHHH------HHH-HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Q 003557 26 AHSNLGNLMKAQGLVQEAYS------CYL-EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL--------KPT 90 (811)
Q Consensus 26 ~~~~l~~~~~~~g~~~~A~~------~~~-~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~ 90 (811)
-....|......|.+.+|.+ .+. ..-...|.....+..++.++...+++++|+..-.++.-. .|+
T Consensus 934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence 33445555556666666665 333 122234555666666666777777776666666555432 122
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 003557 91 FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALK 170 (811)
Q Consensus 91 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 170 (811)
....+.+++......++...|+..+.++....-- .. -+..|.-.....++..++.
T Consensus 1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L------------s~-------------ge~hP~~a~~~~nle~l~~ 1068 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL------------SS-------------GEDHPPTALSFINLELLLL 1068 (1236)
T ss_pred HHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc------------cc-------------CCCCCchhhhhhHHHHHHh
Confidence 3334555555555555555555555544432000 00 0113333333444444444
Q ss_pred HcCCHHHHHHHHHHHHhcCC--------CChHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 003557 171 DVGRVDEAIQCYNQCLSLQP--------SHPQALTNLGNIYMEWNMLPAAASYYKATLAV 222 (811)
Q Consensus 171 ~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 222 (811)
..++++.|+.+++.+++... .....+..+++++...+++..|....+.....
T Consensus 1069 ~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1069 GVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 44555555555555544321 12234555566666666666666555554433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.36 E-value=2.6 Score=46.14 Aligned_cols=125 Identities=18% Similarity=0.217 Sum_probs=56.4
Q ss_pred HHcCCHHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCCHHHHHH
Q 003557 69 MESGDLNRALQYYK--EAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAIL 146 (811)
Q Consensus 69 ~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~ 146 (811)
...++++++....+ +.+..-| ..-...++..+.++|..+.|+.+. .++...+. +..+.|+.+.|.+
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~-------~D~~~rFe---LAl~lg~L~~A~~ 339 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFV-------TDPDHRFE---LALQLGNLDIALE 339 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHS-------S-HHHHHH---HHHHCT-HHHHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhc-------CChHHHhH---HHHhcCCHHHHHH
Confidence 34566666555553 1121111 233455556666666666655443 22222222 2345666666655
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHH
Q 003557 147 YYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 218 (811)
Q Consensus 147 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 218 (811)
..++ .++...|..+|.....+|+++-|.++|+++- -+..+..+|...|+.+.-.++.+.
T Consensus 340 ~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 340 IAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHH
Confidence 4432 2345566666666666677666666666532 233344455555554444443333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.2 Score=51.29 Aligned_cols=87 Identities=17% Similarity=0.265 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHhhcCCeEEEeecCChhhHHHHHHHHHHc-CCCCCceEEcCCCChHHHHHhcCCCcEEecCCCCCChh
Q 003557 614 MDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQ-GVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHT 692 (811)
Q Consensus 614 ~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~l~~~~~~~-gi~~~rv~~~~~~~~~~~~~~~~~~Dv~ld~~~~~g~~ 692 (811)
....+.++...+++..|+..|++.-.+......-...+.+. +. ..++++....+..+.+ ..+|.++ .-.+|
T Consensus 138 ~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Ll---~~s~~Vv----tinSt 209 (269)
T PF05159_consen 138 SQADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNL-PNVVIIDDDVNLYELL---EQSDAVV----TINST 209 (269)
T ss_pred cHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcC-CCeEEECCCCCHHHHH---HhCCEEE----EECCH
Confidence 34567777788888899999988765522111111333333 33 3455555555555555 6688876 34478
Q ss_pred HHHHHHHhCCCccccc
Q 003557 693 TGTDILWAGLPMITLP 708 (811)
Q Consensus 693 t~~eal~~g~Pvvt~~ 708 (811)
+.+|||.+|+||||+.
T Consensus 210 vGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 210 VGLEALLHGKPVIVFG 225 (269)
T ss_pred HHHHHHHcCCceEEec
Confidence 9999999999999864
|
Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport |
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.16 E-value=20 Score=41.30 Aligned_cols=284 Identities=12% Similarity=0.059 Sum_probs=179.5
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---cCChHHHHHHH
Q 003557 39 LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA---LGMPQEAIMCY 115 (811)
Q Consensus 39 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~ 115 (811)
.-+.-+..++.-+.+++.+...+..|..++...|++++-...-.++.++.|..+..|.....-... .+...++...|
T Consensus 94 ~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ 173 (881)
T KOG0128|consen 94 GGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELF 173 (881)
T ss_pred cchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHH
Confidence 344555666666677888888899999999999999999888889999999999888776654432 35667888899
Q ss_pred HHHHhhCCChhHHHhHHHH-------HHHcCCHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHcCCHHHHHHH
Q 003557 116 QRAVQTRPNAIAFGNLAST-------YYERGQADMAILYYKQAIGCDP-------RFLEAYNNLGNALKDVGRVDEAIQC 181 (811)
Q Consensus 116 ~~al~~~p~~~~~~~la~~-------~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~ 181 (811)
++++........|...+.. +...++++.....|.+++..-- ...+.+..+-..|...-..++-+.+
T Consensus 174 ekal~dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~ 253 (881)
T KOG0128|consen 174 EKALGDYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIAL 253 (881)
T ss_pred HHHhcccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9998765554444444433 3445677888888888875421 2334555566666666666777777
Q ss_pred HHHHHhcCCCCh---HHHHHHH--H-HHHHcCChHHHHHHHHH-------HHhccCCCchHHHHHHHHHHHcCCHHHHHH
Q 003557 182 YNQCLSLQPSHP---QALTNLG--N-IYMEWNMLPAAASYYKA-------TLAVTTGLSAPFNNLAVIYKQQGNYADAIS 248 (811)
Q Consensus 182 ~~~al~~~p~~~---~~~~~la--~-~~~~~g~~~~A~~~~~~-------~l~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (811)
+...+...-+.. ..+.... . ......+++.|..-+.+ .++..+.....|..+.......|..-.-..
T Consensus 254 ~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l 333 (881)
T KOG0128|consen 254 FVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQL 333 (881)
T ss_pred HHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 777776542211 1111111 1 11233445555444333 333344444556667777778888888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Q 003557 249 CYNEVLRIDPLAADGLVNRGNTYK-EIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGH-VEAAIKSYKQAL 322 (811)
Q Consensus 249 ~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al 322 (811)
.++++....+.+...|...+...- .++-.+.+...+-+++...|-....|...-..+.+.+. ...-...+.+++
T Consensus 334 ~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~l 409 (881)
T KOG0128|consen 334 IEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDL 409 (881)
T ss_pred HHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHH
Confidence 888888888888888877765543 34555566677777887777766555444334444332 223333444444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 811 | ||||
| 3pe3_A | 723 | Structure Of Human O-Glcnac Transferase And Its Com | 2e-98 | ||
| 3pe3_A | 723 | Structure Of Human O-Glcnac Transferase And Its Com | 1e-58 | ||
| 2vsy_A | 568 | Xanthomonas Campestris Putative Ogt (Xcc0866), Apos | 1e-60 | ||
| 2vsn_A | 568 | Structure And Topological Arrangement Of An O-Glcna | 1e-60 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 4e-60 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 2e-23 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 4e-25 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 5e-21 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 4e-19 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 1e-14 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 1e-19 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 6e-15 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 6e-15 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 5e-18 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 9e-14 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 8e-16 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 4e-13 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 5e-12 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 6e-12 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 1e-08 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 5e-08 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 5e-10 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 2e-06 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 6e-06 | ||
| 2q7f_A | 243 | Crystal Structure Of Yrrb: A Tpr Protein With An Un | 6e-10 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 2e-09 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 6e-08 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 1e-06 | ||
| 4a1s_A | 411 | Crystallographic Structure Of The Pins:insc Complex | 2e-08 | ||
| 2c0l_A | 305 | Tpr Domain Of Human Pex5p In Complex With Human Msc | 6e-07 | ||
| 2c0l_A | 305 | Tpr Domain Of Human Pex5p In Complex With Human Msc | 8e-05 | ||
| 1fch_A | 368 | Crystal Structure Of The Pts1 Complexed To The Tpr | 7e-07 | ||
| 1fch_A | 368 | Crystal Structure Of The Pts1 Complexed To The Tpr | 9e-05 | ||
| 2c0m_A | 319 | Apo Form Of The Tpr Domain Of The Pex5p Receptor Le | 7e-07 | ||
| 2c0m_A | 319 | Apo Form Of The Tpr Domain Of The Pex5p Receptor Le | 8e-05 | ||
| 3r9a_B | 328 | Human Alanine-Glyoxylate Aminotransferase In Comple | 8e-07 | ||
| 3r9a_B | 328 | Human Alanine-Glyoxylate Aminotransferase In Comple | 1e-04 | ||
| 2j9q_A | 328 | A Novel Conformation For The Tpr Domain Of Pex5p Le | 8e-07 | ||
| 2j9q_A | 328 | A Novel Conformation For The Tpr Domain Of Pex5p Le | 9e-05 | ||
| 3uq3_A | 258 | Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = | 2e-06 | ||
| 3sf4_A | 406 | Crystal Structure Of The Complex Between The Conser | 5e-06 | ||
| 3ro2_A | 338 | Structures Of The LgnNUMA COMPLEX Length = 338 | 5e-06 | ||
| 4g2v_A | 340 | Structure Complex Of Lgn Binding With Frmpd1 Length | 5e-06 | ||
| 2vyi_A | 131 | Crystal Structure Of The Tpr Domain Of Human Sgt Le | 7e-06 | ||
| 4eqf_A | 365 | Trip8b-1a#206-567 Interacting With The Carboxy-Term | 3e-05 | ||
| 1elw_A | 118 | Crystal Structure Of The Tpr1 Domain Of Hop In Comp | 1e-04 | ||
| 2ho1_A | 252 | Functional Characterization Of Pseudomonas Aerugino | 2e-04 | ||
| 2fi7_A | 265 | Crystal Structure Of Pilf : Functional Implication | 4e-04 | ||
| 3asg_A | 186 | Mama D159k Mutant 2 Length = 186 | 4e-04 | ||
| 3fp2_A | 537 | Crystal Structure Of Tom71 Complexed With Hsp82 C-T | 5e-04 | ||
| 3lca_A | 533 | Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term | 6e-04 | ||
| 2pl2_A | 217 | Crystal Structure Of Ttc0263: A Thermophilic Tpr Pr | 6e-04 |
| >pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723 | Back alignment and structure |
|
| >pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723 | Back alignment and structure |
|
| >pdb|2VSY|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866), Apostructure Length = 568 | Back alignment and structure |
|
| >pdb|2VSN|A Chain A, Structure And Topological Arrangement Of An O-Glcnac Transferase Homolog: Insight Into Molecular Control Of Intracellular Glycosylation Length = 568 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual Peptide- Binding Site Length = 243 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex Length = 411 | Back alignment and structure |
|
| >pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2 Length = 305 | Back alignment and structure |
|
| >pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2 Length = 305 | Back alignment and structure |
|
| >pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region Of Human Pex5 Length = 368 | Back alignment and structure |
|
| >pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region Of Human Pex5 Length = 368 | Back alignment and structure |
|
| >pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor Length = 319 | Back alignment and structure |
|
| >pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor Length = 319 | Back alignment and structure |
|
| >pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258 | Back alignment and structure |
|
| >pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved Cell Polarity Proteins Inscuteable And Lgn Length = 406 | Back alignment and structure |
|
| >pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX Length = 338 | Back alignment and structure |
|
| >pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1 Length = 340 | Back alignment and structure |
|
| >pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131 | Back alignment and structure |
|
| >pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal Seven Residues Of Hcn2 Length = 365 | Back alignment and structure |
|
| >pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118 | Back alignment and structure |
|
| >pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf Length = 252 | Back alignment and structure |
|
| >pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa Length = 265 | Back alignment and structure |
|
| >pdb|3ASG|A Chain A, Mama D159k Mutant 2 Length = 186 | Back alignment and structure |
|
| >pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537 | Back alignment and structure |
|
| >pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533 | Back alignment and structure |
|
| >pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein In Thermus Thermophilus Hb27 Length = 217 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 590 bits (1523), Expect = 0.0
Identities = 166/622 (26%), Positives = 261/622 (41%), Gaps = 60/622 (9%)
Query: 173 GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNN 232
+ + +P A L +
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAE----------------------------- 33
Query: 233 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 292
G+ L + P + + G R +A +A P
Sbjct: 34 -----LGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP 88
Query: 293 TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMF 352
L A +D+G EAA +Y +A L P+ P T LL+ + +C W D +
Sbjct: 89 EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLS 148
Query: 353 SEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHP 412
++V + + + +V+PF ++ L +R A + A
Sbjct: 149 AQVRAAVAQG-----VGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLAPTRVRSK 203
Query: 413 VPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEV--FCYALSPNDGTE 470
LRVG+VS+ FG HP L ++F + ++ +A S +DG+
Sbjct: 204 -----------GPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGST 252
Query: 471 WRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVS 530
R R ++A DV+A+ AK I I +L +L G+ G R E+FA++PAP+QV+
Sbjct: 253 LRTR-LAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVN 311
Query: 531 YMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQ 590
++ +PGT+GA ++DY++ D F P YSE ++ + + +D +
Sbjct: 312 WLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSDTSR------VVAEP 365
Query: 591 PKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAY 650
P R+ GLPE + CFN YK++P+ +LR VP+S LWLL P + RLRA+
Sbjct: 366 PSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADARLRAF 425
Query: 651 AVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLE 710
A AQGV +++F +++ R ADLFLDT NAHTT +D LW G P++T P E
Sbjct: 426 AHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGE 485
Query: 711 KMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFD 770
A RVAGSL GL +EM V + +AV+LA D L AL ++ +R +F
Sbjct: 486 TFAARVAGSLNHHLGL-DEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRASGVFH 544
Query: 771 TARWVKNLERSYFKMWSLHCSG 792
+ + + H
Sbjct: 545 MDGFADDFGALLQALARRHGWL 566
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 2e-35
Identities = 25/142 (17%), Positives = 36/142 (25%), Gaps = 1/142 (0%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
R A+ P A L + G L + P A +
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
L + A ++A P P L LG+ + G + A Y RA Q P
Sbjct: 63 LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122
Query: 124 N-AIAFGNLASTYYERGQADMA 144
L +
Sbjct: 123 EEPYITAQLLNWRRRLCDWRAL 144
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 1e-34
Identities = 42/201 (20%), Positives = 62/201 (30%), Gaps = 36/201 (17%)
Query: 37 QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYL 96
A+R +P +AW LA + GD + + L P P+A
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 97 NLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDP 156
LG V EA + Q+A P
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASD---------------------------------AAP 88
Query: 157 RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM---EWNMLPAAA 213
LG+AL+D G+ + A Y + L P P L N +W L +
Sbjct: 89 EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLS 148
Query: 214 SYYKATLAVTTGLSAPFNNLA 234
+ +A +A G PF L+
Sbjct: 149 AQVRAAVAQGVGAVEPFAFLS 169
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 5e-28
Identities = 35/237 (14%), Positives = 52/237 (21%), Gaps = 67/237 (28%)
Query: 71 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGN 130
+ D R L + AV+ +P A+L L + +G M QR +
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---------- 51
Query: 131 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 190
P EA LG R EA Q P
Sbjct: 52 -----------------------LHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP 88
Query: 191 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 250
HP LG+ + G A + Y
Sbjct: 89 EHPGIALWLGHALED----------------------------------AGQAEAAAAAY 114
Query: 251 NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD 307
++ P N + + + A A +D
Sbjct: 115 TRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSED 171
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 3e-25
Identities = 27/131 (20%), Positives = 41/131 (31%), Gaps = 3/131 (2%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+ G ++ LAL+P +A + LG + Q EA +A P
Sbjct: 34 LGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGI 93
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP---QEAIMCYQR 117
L ++G A Y A +L P P L N + L +
Sbjct: 94 ALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153
Query: 118 AVQTRPNAIAF 128
AV A+
Sbjct: 154 AVAQGVGAVEP 164
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 455 bits (1171), Expect = e-149
Identities = 203/794 (25%), Positives = 324/794 (40%), Gaps = 85/794 (10%)
Query: 17 LALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 76
P D+ +NL N+ + QG ++EA Y +AL + P FA A SNLA + + G L
Sbjct: 2 PGSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 61
Query: 77 ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTY 135
AL +YKEA+++ PTF DAY N+GN K + Q A+ CY RA+Q P A A NLAS +
Sbjct: 62 ALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIH 121
Query: 136 YERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQA 195
+ G AI Y+ A+ P F +AY NL + L+ V + + + +S+ +
Sbjct: 122 KDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181
Query: 196 LTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLR 255
+ P + + KA + + VL
Sbjct: 182 NRLPSVHPHHSMLYPLSHGFRKAIAE--------------------RHGNLCLDKINVLH 221
Query: 256 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 315
P + + +G V+ ++ +
Sbjct: 222 KPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSH--------------------------- 254
Query: 316 KSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFH 375
L++ + S +D +V +++S +P
Sbjct: 255 -------LMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGKAA 307
Query: 376 AIAYPIDPMLALEIS-RKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVSSD 434
+ + + ++ + + A R A G L + Y+ +D
Sbjct: 308 DRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLG-----YPGTSGALFMDYIITD 362
Query: 435 FGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEH--------FVDVS 486
P E + + D + +A + +
Sbjct: 363 QETSPAEV------AEQYSEKLAYMPHTFFIGDHANMFPHLKKKAVIDFKSNGHIYDNRI 416
Query: 487 AMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYL 546
++ + ++ ++ + G + + ++ P T A + +
Sbjct: 417 VLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADS-----SNTALNMPVIPMNTIAEAVIEM 471
Query: 547 VTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFA 606
+ + S L +N+ +V RS YGLPED ++
Sbjct: 472 INRGQIQITINGFSISNGLA----TTQINNKAATGEEVPRTIIVTTRSQYGLPEDAIVYC 527
Query: 607 CFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDV 666
FNQLYK+DP W NIL+RVPNS LWLLRFPA GE ++ YA G+ ++IIF+ V
Sbjct: 528 NFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPV 587
Query: 667 AMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGL 726
A K+EH+RR LAD+ LDTPLCN HTTG D+LWAG PM+T+P E +A+RVA S G
Sbjct: 588 APKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGC 647
Query: 727 GEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMW 786
E+I + +EYE+ AV L D + L+ + K+ R++ PLF+T ++ LER Y +MW
Sbjct: 648 -LELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMW 706
Query: 787 SLHCSGQKPQHFKV 800
+ +G KP H
Sbjct: 707 EHYAAGNKPDHMIK 720
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 6e-30
Identities = 51/206 (24%), Positives = 87/206 (42%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
++G+L EA ++A+ ++P DA+SN+GN +K VQ A CY A++I P FA A
Sbjct: 54 QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADA 113
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
SNLA + +SG++ A+ Y+ A+KLKP FPDAY NL + + + + ++ V
Sbjct: 114 HSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173
Query: 121 TRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 180
+ + L S + +++AI L +
Sbjct: 174 IVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKL 233
Query: 181 CYNQCLSLQPSHPQALTNLGNIYMEW 206
+ S ++
Sbjct: 234 SDGRLRVGYVSSDFGNHPTSHLMQSI 259
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 359 bits (923), Expect = e-117
Identities = 126/340 (37%), Positives = 199/340 (58%), Gaps = 1/340 (0%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 61
+ RL+ +A A+ NPLL +A+SNLGN+ K +G +QEA Y ALR++P F +
Sbjct: 45 QCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGY 104
Query: 62 SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 121
NLA + +GD+ A+Q Y A++ P +LGN+ KALG +EA CY +A++T
Sbjct: 105 INLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164
Query: 122 RPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 180
+PN A+A+ NL + +G+ +AI ++++A+ DP FL+AY NLGN LK+ D A+
Sbjct: 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA 224
Query: 181 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 240
Y + LSL P+H NL +Y E ++ A Y+ + + + NLA K++
Sbjct: 225 AYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK 284
Query: 241 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN 300
G+ A+A CYN LR+ P AD L N N +E G + +A++ Y +A+ + P A AH+N
Sbjct: 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344
Query: 301 LASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
LAS + G ++ A+ YK+A+ + P F +A N+ +TL+
Sbjct: 345 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 344 bits (884), Expect = e-111
Identities = 99/340 (29%), Positives = 161/340 (47%), Gaps = 1/340 (0%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 61
+ G A + C Q P L ++ + + A++ P A A+
Sbjct: 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAY 70
Query: 62 SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 121
SNL ++ E G L A+++Y+ A++LKP F D Y+NL A G + A+ Y A+Q
Sbjct: 71 SNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY 130
Query: 122 RPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 180
P+ +L + G+ + A Y +AI P F A++NLG G + AI
Sbjct: 131 NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIH 190
Query: 181 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 240
+ + ++L P+ A NLGN+ E + A + Y L+++ + NLA +Y +Q
Sbjct: 191 HFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ 250
Query: 241 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN 300
G AI Y + + P D N N KE G V +A Y A+ + PT A++ N
Sbjct: 251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN 310
Query: 301 LASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
LA+ ++ G++E A++ Y++AL + P+F A NL LQ
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 316 bits (812), Expect = e-101
Identities = 89/308 (28%), Positives = 146/308 (47%), Gaps = 1/308 (0%)
Query: 29 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 88
L + G + A ++ R +P L+ + + L+R+ + A+K
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 89 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILY 147
P +AY NLGNVYK G QEAI Y+ A++ +P+ + NLA+ G + A+
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 148 YKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 207
Y A+ +P ++LGN LK +GR++EA CY + + QP+ A +NLG ++
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183
Query: 208 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNR 267
+ A +++ + + + NL + K+ + A++ Y L + P A N
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243
Query: 268 GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 327
Y E G + AI Y RAI ++P +A+ NLA+A K+ G V A Y AL L P
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303
Query: 328 FPEATCNL 335
++ NL
Sbjct: 304 HADSLNNL 311
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 311 bits (799), Expect = 6e-99
Identities = 117/309 (37%), Positives = 164/309 (53%), Gaps = 35/309 (11%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 61
G + A Q AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AW
Sbjct: 113 AAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW 172
Query: 62 SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 121
SNL +F G++ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232
Query: 122 RPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 180
PN A+ GNLA YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA
Sbjct: 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAED 292
Query: 181 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 240
CYN L L P+H +L NL NI E Q
Sbjct: 293 CYNTALRLCPTHADSLNNLANIKRE----------------------------------Q 318
Query: 241 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN 300
GN +A+ Y + L + P A N + ++ G++ +A+ Y AI I PT A+A++N
Sbjct: 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 378
Query: 301 LASAYKDSG 309
+ + K+
Sbjct: 379 MGNTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 283 bits (727), Expect = 2e-88
Identities = 81/281 (28%), Positives = 135/281 (48%), Gaps = 1/281 (0%)
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
LA ++GD A ++ + + +P L L +++ + A++
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 121 TRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 179
P A A+ NL + Y ERGQ AI +Y+ A+ P F++ Y NL AL G ++ A+
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 180 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 239
Q Y L P ++LGN+ L A + Y + + ++NL ++
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181
Query: 240 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 299
QG AI + + + +DP D +N GN KE A+ Y+RA+++ P A H
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241
Query: 300 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
NLA Y + G ++ AI +Y++A+ L+P FP+A CNL + L+
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK 282
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 248 bits (636), Expect = 4e-75
Identities = 70/242 (28%), Positives = 119/242 (49%), Gaps = 1/242 (0%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 61
GRL EA C +A+ P A SNLG + AQG + A + +A+ + P F A+
Sbjct: 147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY 206
Query: 62 SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 121
NL + E+ +RA+ Y A+ L P + NL VY G+ AI Y+RA++
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266
Query: 122 RPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 180
+P+ A+ NLA+ E+G A Y A+ P ++ NNL N ++ G ++EA++
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 326
Query: 181 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 240
Y + L + P A +NL ++ + L A +YK + ++ + ++N+ K+
Sbjct: 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386
Query: 241 GN 242
+
Sbjct: 387 QD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 4e-31
Identities = 46/106 (43%), Positives = 63/106 (59%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
KG + EA C AL L P D+ +NL N+ + QG ++EA Y +AL + P FA A
Sbjct: 282 KEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 106
SNLA + + G L AL +YKEA+++ PTF DAY N+GN K +
Sbjct: 342 HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 3e-14
Identities = 12/73 (16%), Positives = 24/73 (32%)
Query: 263 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 322
G + + + G A + ++ P L+S + ++ + A+
Sbjct: 1 GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60
Query: 323 LLRPDFPEATCNL 335
P EA NL
Sbjct: 61 KQNPLLAEAYSNL 73
|
| >3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A Length = 631 | Back alignment and structure |
|---|
Score = 363 bits (933), Expect = e-115
Identities = 79/573 (13%), Positives = 164/573 (28%), Gaps = 44/573 (7%)
Query: 226 LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYI 285
+S ++Y++ A S + D + + + I
Sbjct: 94 ISDLGVQRFLVYQRWLALIFASSPFVNA---DHILQTYNREPNRKNSLEIHLDSSKSSLI 150
Query: 286 RAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSW 345
+ + + + NL + S + A++ Q+ A LQ W
Sbjct: 151 KFCILYLPESNVNLNLDVMWNISPELCASLCFALQSPRFIGT-STAFNKRATILQ----W 205
Query: 346 EDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFA 405
R ++ + S + H +Y + ++ R I
Sbjct: 206 FPR-----HLDQLKNLNNIPSAISHDVYMHC-SY-DTSVNKHDVKRALNHV---IRRHIE 255
Query: 406 LPPFNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSP 465
+ + + V + H + + + +E+ +
Sbjct: 256 SEYGWKDRDVAHIGYRNNKPVMVVLLEHFHSAHSIYRTHSTSM-IAAREHFYLIGLGSPS 314
Query: 466 NDGTEWRQRTQSEAEHFVDVSAMS----SDMIAKLINEDKIQILINLNGYTKGARNEIFA 521
D Q Q + F V+ + + I + + I +
Sbjct: 315 VD-----QAGQEVFDEFHLVAGDNMKQKLEFIRSVCESNGAAIFYMPSIGMDMTTIFASN 369
Query: 522 MQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKN 581
+ APIQ +G P TT + +I+Y++ ++ +SE L+ +P
Sbjct: 370 TRLAPIQAIALGHPATTHSDFIEYVIVEDDYVG--SEECFSETLLRLPKDALPYVP---- 423
Query: 582 MDVLDPNCQPKRSDYGLPEDK--FIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRF 639
P++ DY L E+ + K++P I R +
Sbjct: 424 -----SALAPEKVDYLLRENPEVVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFAL 478
Query: 640 PAA-GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDIL 698
+ G + D + +++R D+ ++ D++
Sbjct: 479 GQSNGITHPYVERFIKSYLGDSATAHPHSPYHQYLRILHNCDMMVNPFPFGNTNGIIDMV 538
Query: 699 WAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNK 758
GL + ++ + L GL E +I N++ EY ERAV LA + Q+ L
Sbjct: 539 TLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIANTVDEYVERAVRLAENHQERLELRRY 598
Query: 759 LKSVRLTCPLFDTA--RWVKNLERSYFKMWSLH 789
+ LF + +
Sbjct: 599 IIENNGLNTLFTGDPRPMGQVFLEKLNAFLKEN 631
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 302 bits (774), Expect = 6e-94
Identities = 48/325 (14%), Positives = 93/325 (28%), Gaps = 1/325 (0%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
+ QA L P V A ++ G +A VQ +A + P +A ++
Sbjct: 154 ETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 213
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
G + R L +A L P A + G +AL Q + +A P
Sbjct: 214 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 273
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
+A + + + QA G P+ + A + G + + V +
Sbjct: 274 QQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 333
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
Q L P A+ + + +T + +
Sbjct: 334 CQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALET 393
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+ + + P + + + + V + +A + P A A+
Sbjct: 394 VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 453
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPD 327
+ A + AL +
Sbjct: 454 GGRPALESIVAQLSRPDPALAALTN 478
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 300 bits (771), Expect = 2e-93
Identities = 50/338 (14%), Positives = 96/338 (28%), Gaps = 1/338 (0%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
+ QA L P V A ++ +A VQ +A + P +A ++
Sbjct: 86 ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 145
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
G + L +A L P A + G +AL Q + +A P
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 205
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
+A + + QA G P+ + A + G + + V +
Sbjct: 206 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 265
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
Q L P A+ + + +T + +
Sbjct: 266 CQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALET 325
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+ + + P + + + + V + +A + P A A+
Sbjct: 326 VQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNG 385
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
+ V+ + QA L P+ A + Q
Sbjct: 386 GGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQ 423
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 296 bits (760), Expect = 9e-92
Identities = 51/340 (15%), Positives = 96/340 (28%), Gaps = 1/340 (0%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 61
+ QA L P V A ++ +A VQ +A + P +A
Sbjct: 118 ALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAI 177
Query: 62 SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 121
++ G + R L +A L P A + G +AL Q + +A
Sbjct: 178 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL 237
Query: 122 RPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 180
P +A + + QA G P+ + A + + + V +
Sbjct: 238 TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLP 297
Query: 181 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 240
Q L P A+ + G + +T + +
Sbjct: 298 VLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQAL 357
Query: 241 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN 300
+ + + P + + G + + V + +A + P A A+
Sbjct: 358 ETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 417
Query: 301 LASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
+ V+ + QA L P A +
Sbjct: 418 HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRP 457
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 292 bits (749), Expect = 4e-90
Identities = 55/345 (15%), Positives = 101/345 (29%), Gaps = 6/345 (1%)
Query: 2 RKGRLNEAAQCCRQALA-----LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 56
EA R AL L P V A ++ +A VQ +A + P
Sbjct: 45 GGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 104
Query: 57 FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQ 116
+A ++ G + R L +A L P A + +AL Q +
Sbjct: 105 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLC 164
Query: 117 RAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV 175
+A P +A + + QA G P+ + A + G + + V
Sbjct: 165 QAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETV 224
Query: 176 DEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAV 235
+ Q L P A+ + G + +T + +
Sbjct: 225 QRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSG 284
Query: 236 IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMA 295
+ + + + P + + G + + V + +A + P
Sbjct: 285 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV 344
Query: 296 EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
A A+ + V+ + QA L P+ A + Q
Sbjct: 345 VAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQ 389
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 264 bits (677), Expect = 9e-80
Identities = 47/339 (13%), Positives = 95/339 (28%), Gaps = 1/339 (0%)
Query: 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 62
+ L A + L L+ + + G + + + + L + P +A +
Sbjct: 17 EALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIA 76
Query: 63 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 122
+ G + R L +A L P A + +AL Q + +A
Sbjct: 77 SHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 136
Query: 123 PN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 181
P +A + + QA G P + A + G + + V +
Sbjct: 137 PEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPV 196
Query: 182 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQG 241
Q L P A+ + G + +T + +
Sbjct: 197 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 256
Query: 242 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 301
+ + + P + + + + V + +A + P A A+
Sbjct: 257 TVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 316
Query: 302 ASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
+ V+ + QA L P A + Q
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQ 355
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 243 bits (621), Expect = 7e-72
Identities = 40/316 (12%), Positives = 82/316 (25%), Gaps = 1/316 (0%)
Query: 26 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAV 85
H + L+ A L++ + + G+ +
Sbjct: 6 HHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPL 65
Query: 86 KLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMA 144
L P A + +AL Q + +A P +A +
Sbjct: 66 NLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRL 125
Query: 145 ILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 204
+ QA G P + A + + + V + Q L P A+ + G
Sbjct: 126 LPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQ 185
Query: 205 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL 264
+ +T + + + + + P +
Sbjct: 186 ALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAI 245
Query: 265 VNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL 324
+ G + + V + +A + P A A+ + + V+ + QA L
Sbjct: 246 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGL 305
Query: 325 RPDFPEATCNLLHTLQ 340
P A + Q
Sbjct: 306 TPQQVVAIASNGGGKQ 321
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 3e-18
Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 1/98 (1%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
+ QA L P V A ++ +A VQ +A + P +A ++
Sbjct: 392 ETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 451
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPT-FPDAYLNLGN 100
G + L A+ A LG
Sbjct: 452 NGGGRPALESIVAQLSRPDPALAALTNDHLVALACLGG 489
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 304 bits (779), Expect = 2e-93
Identities = 59/384 (15%), Positives = 117/384 (30%), Gaps = 45/384 (11%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ-------------------- 41
+ A +C ++AL ++ +A L + +
Sbjct: 212 NLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL 271
Query: 42 -----------------EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 84
YL ++ + A L +
Sbjct: 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKI 331
Query: 85 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADM 143
+++ P D Y G + + V P A+ + + Y +
Sbjct: 332 LEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISE 391
Query: 144 AILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 203
A Y+ ++ DP+F A+ ++ G D+AI Y L LG +
Sbjct: 392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQH 451
Query: 204 MEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI------- 256
M+ + A Y +++ A+ N L V+ + + AI+ + L +
Sbjct: 452 MQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511
Query: 257 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 316
+ A N G+ Y+++ AI + + + A H +A Y AI
Sbjct: 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAIT 571
Query: 317 SYKQALLLRPDFPEATCNLLHTLQ 340
++L + P+ A+ L L+
Sbjct: 572 HLHESLAISPNEIMASDLLKRALE 595
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 283 bits (725), Expect = 1e-85
Identities = 54/315 (17%), Positives = 101/315 (32%), Gaps = 8/315 (2%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 61
A+ ++ D + + + + + + L I P +
Sbjct: 283 SHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVY 342
Query: 62 SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 121
ESG+ N+ + V P +L +G Y + EA + ++
Sbjct: 343 PLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM 402
Query: 122 RPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 180
P A+ A ++ G+ D AI Y A Y LG +G + A +
Sbjct: 403 DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANE 462
Query: 181 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP-------FNNL 233
+L P L LG + + + A ++++ L + + + NL
Sbjct: 463 YLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522
Query: 234 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 293
Y++ Y AI N+ L + A+ Y AI ++ I P
Sbjct: 523 GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582
Query: 294 MAEAHANLASAYKDS 308
A L A +++
Sbjct: 583 EIMASDLLKRALEEN 597
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 222 bits (568), Expect = 2e-63
Identities = 49/281 (17%), Positives = 86/281 (30%), Gaps = 42/281 (14%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
G N+ + +P +G + EA + ++ + P F A
Sbjct: 350 HESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA 409
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
W A F G+ ++A+ Y A +L YL LG + LG A Q +
Sbjct: 410 WIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469
Query: 121 TRP-NAIAFGNLASTYYERGQADMAILYYKQAI-------GCDPRFLEAYNNLGNALKDV 172
+ + L + + AI +++ A+ + + + NLG+A + +
Sbjct: 470 LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529
Query: 173 GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNN 232
D AI NQ L L + T +
Sbjct: 530 KMYDAAIDALNQGLLLSTNDANVHTAIAL------------------------------- 558
Query: 233 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE 273
+Y + AI+ +E L I P +E
Sbjct: 559 ---VYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 180 bits (457), Expect = 2e-48
Identities = 50/360 (13%), Positives = 87/360 (24%), Gaps = 56/360 (15%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSC-------------- 46
+ + + AA + L + DA L + G A
Sbjct: 95 LMQQQYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTGDYARAKCLLTKEDLYNRSSACR 153
Query: 47 --YLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA 104
L + A + L D A + + +K G VY
Sbjct: 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLE-ASMCYLRGQVYTN 212
Query: 105 LGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAI---LYYKQAIGCDPRFLE 160
L A CY+ A+ AF L S + + + L Y D FL
Sbjct: 213 LSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272
Query: 161 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATL 220
+ L + Y ++ L +
Sbjct: 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL----------------- 315
Query: 221 AVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDA 280
+ + D ++ ++L IDP D + E G
Sbjct: 316 -----------------FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKL 358
Query: 281 IQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
+ P A + Y + A + + ++ + P F A H+
Sbjct: 359 YLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFA 418
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 97.2 bits (242), Expect = 5e-21
Identities = 30/263 (11%), Positives = 53/263 (20%), Gaps = 55/263 (20%)
Query: 131 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN------- 183
+ Q A ++ + +A+ L G A
Sbjct: 90 WRHDALMQQQYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTGDYARAKCLLTKEDLYNR 148
Query: 184 ---------QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLA 234
CL AL LG A + S
Sbjct: 149 SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASM-CYLRG 207
Query: 235 VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYK---------------------- 272
+Y N+ A CY E L +D + + +
Sbjct: 208 QVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED 267
Query: 273 ---------------EIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKS 317
+DY+ +I ++ A +
Sbjct: 268 AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAI 327
Query: 318 YKQALLLRPDFPEATCNLLHTLQ 340
+ L + P + L +L
Sbjct: 328 TTKILEIDPYNLDVYPLHLASLH 350
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 5e-12
Identities = 13/71 (18%), Positives = 26/71 (36%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+ + A Q L L+ + H+ + + + + A + E+L I P +A
Sbjct: 527 RKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586
Query: 61 WSNLAGLFMES 71
L E+
Sbjct: 587 SDLLKRALEEN 597
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 281 bits (721), Expect = 7e-88
Identities = 62/349 (17%), Positives = 118/349 (33%), Gaps = 32/349 (9%)
Query: 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 83
V+ H LG + A G + +A S + A+ P IA+ A +F+ G AL +
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 84 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----------------AIA 127
+ LK F A L G++ G EA +++ +++ P+
Sbjct: 63 VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122
Query: 128 FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 187
+ A ++ AI + + + E G +AI
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 182
Query: 188 LQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV------------TTGLSAPFNNLAV 235
L+ + +A + +Y + + S + L + A
Sbjct: 183 LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 242
Query: 236 IYKQQGNYADAISCYNEVLRIDPLAADGLV----NRGNTYKEIGRVTDAIQDYIRAITIR 291
+ G Y DA S Y V++ +P A+ V + + + + +AI+ + +
Sbjct: 243 ELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302
Query: 292 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
P A + A AY + AI+ Y+ A + + L +
Sbjct: 303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 206 bits (526), Expect = 6e-60
Identities = 52/322 (16%), Positives = 99/322 (30%), Gaps = 66/322 (20%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA---------------QGLVQEAYS 45
+++G+L+EA ++ L NP + L+KA A +
Sbjct: 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT 141
Query: 46 CYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 105
+ L + A A F++ G+ +A+ K A KLK +A+ + +Y L
Sbjct: 142 FLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQL 201
Query: 106 GMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNL 165
G + ++ + ++ + + Q + L
Sbjct: 202 GDHELSLSEVRECLKLDQ------DHKRCFAHYKQV---------------KKLNKLIES 240
Query: 166 GNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG 225
L GR +A Y + +PS +
Sbjct: 241 AEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS-------------------------- 274
Query: 226 LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYI 285
+ + + +AI +EVL+++P + L +R Y +AIQDY
Sbjct: 275 ----KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 330
Query: 286 RAITIRPTMAEAHANLASAYKD 307
A + L A +
Sbjct: 331 AAQEHNENDQQIREGLEKAQRL 352
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 183 bits (467), Expect = 1e-51
Identities = 38/227 (16%), Positives = 75/227 (33%), Gaps = 15/227 (6%)
Query: 124 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 183
+ L GQ A+ + A+ DP AY +G+ A+
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 184 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYK----- 238
+ ++L+ A G++ ++ L A +K L + + K
Sbjct: 62 KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ 121
Query: 239 ----------QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAI 288
+Y AI+ +++L + A+ R + + G AI D A
Sbjct: 122 RLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS 181
Query: 289 TIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
++ EA +++ Y G E ++ ++ L L D +
Sbjct: 182 KLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 228
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 5e-26
Identities = 24/160 (15%), Positives = 48/160 (30%), Gaps = 15/160 (9%)
Query: 191 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 250
+ + LG + L A S + A + + A ++ G A+
Sbjct: 1 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL 60
Query: 251 NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL--------- 301
+V+ + + RG+ + G++ +A D+ + + P+ E
Sbjct: 61 TKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM 120
Query: 302 ------ASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
A D AAI + L + E
Sbjct: 121 QRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 270 bits (693), Expect = 9e-84
Identities = 59/360 (16%), Positives = 110/360 (30%), Gaps = 39/360 (10%)
Query: 6 LNEAAQCCRQALALNPLLVDAHSNLGN--------LMKAQGLVQEAYSCYLEALRIQPTF 57
A + + + Q V + Y
Sbjct: 5 FERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKD 64
Query: 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 117
++ GDL + + + A+ P +A+ LG Q AI+ QR
Sbjct: 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQR 124
Query: 118 AVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 176
++ +PN A LA +Y A K I +P++ N + R+
Sbjct: 125 CLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMS 184
Query: 177 EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVI 236
++ + ++ + +A G+ L V+
Sbjct: 185 KSPVDSSVLEGVKELYLEAAHQNGD--------MIDPDLQ--------------TGLGVL 222
Query: 237 YKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 296
+ G + AI +N L + P G T R +A++ Y RA+ I+P
Sbjct: 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIR 282
Query: 297 AHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA--------TCNLLHTLQCVCSWEDR 348
+ NL + + G A+ ++ AL L+ + N+ L+ S D+
Sbjct: 283 SRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ 342
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 2e-33
Identities = 28/229 (12%), Positives = 59/229 (25%), Gaps = 42/229 (18%)
Query: 139 GQADMAILYYKQAIGCDPRFLEAYNNLGN--------ALKDVGRVDEAIQCYNQCLSLQP 190
+ + A + + + + ++ V + + Y
Sbjct: 3 MEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPF 62
Query: 191 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 250
G ++ +G+ I
Sbjct: 63 KDWPGAFEEGLKRLK----------------------------------EGDLPVTILFM 88
Query: 251 NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGH 310
+ DP A+ G T E AI R + ++P +A LA +Y ++ H
Sbjct: 89 EAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH 148
Query: 311 VEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGII 359
+ A ++ K + P + N + S +EG+
Sbjct: 149 QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVK 197
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 275 bits (704), Expect = 3e-83
Identities = 48/329 (14%), Positives = 111/329 (33%), Gaps = 22/329 (6%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
+ L A G + + +A E++ + PT ++
Sbjct: 223 DMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIF 281
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
LA + + +++++AV L P +P Y + G +Y L + A +Q+A P
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
+ LA Y++G+ + ++ + P E L D G D AI+ Y
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY 401
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
+ L+ + +G + + +L A ++ +
Sbjct: 402 DIAKRLEEVQEKIHVGIGPLIGKATIL------------------ARQSSQDPTQLDEEK 443
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+ AI + +DP + + ++ ++ +AI+ + + + TM E
Sbjct: 444 FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT- 502
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEA 331
+ ++ ++ +++
Sbjct: 503 -TFAEAAKIQKRLRADPIISAKMELTLAR 530
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 263 bits (675), Expect = 4e-79
Identities = 51/351 (14%), Positives = 114/351 (32%), Gaps = 30/351 (8%)
Query: 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 62
L L ++ + ++ + AY+ +AL+ +
Sbjct: 164 NTSLASFFGIFDSHLEVSSVNTSSNYD------------TAYALLSDALQRLYSATDEGY 211
Query: 63 NLA-GLFMES-GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
+A L +S + L L+ A G + +A + Q ++
Sbjct: 212 LVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN 271
Query: 121 TRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 180
P ++ LA T ++ + ++++A+ +P + Y + G + A +
Sbjct: 272 LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331
Query: 181 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 240
+ + SL P + L + + + +++ T L A I +
Sbjct: 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR 391
Query: 241 GNYADAISCYNEVLRIDPLAADGLVNRGN----------------TYKEIGRVTDAIQDY 284
G++ AI Y+ R++ + V G T + + AI+
Sbjct: 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451
Query: 285 IRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
+A + P +A LA ++ AI+ ++ + +L E
Sbjct: 452 TKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT 502
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 244 bits (625), Expect = 6e-72
Identities = 65/404 (16%), Positives = 121/404 (29%), Gaps = 66/404 (16%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHS-------NLGNLMKA------------------ 36
G L + + +AL + P A +LGN A
Sbjct: 71 STGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASI 130
Query: 37 -----QGLVQEAYSCYLEAL--------RIQPTFAIAWSNLA--------GLFMESGDLN 75
+ L ++A E L ++ P+ S S + +
Sbjct: 131 EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190
Query: 76 RALQYYKEAVKLKPTFPDAYLNLGNVY--KALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 132
A +A++ + D + N K+ M + R N A+A
Sbjct: 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTG 250
Query: 133 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 192
++ + A + +++I P +Y L L D E + + + + L P +
Sbjct: 251 IFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFKFFQKAVDLNPEY 309
Query: 193 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 252
P + G +Y A ++ ++ P+ LA + +QG + ++ + +NE
Sbjct: 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNE 369
Query: 253 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASA-------- 304
P + + G AI+ Y A + + H +
Sbjct: 370 TKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILA 429
Query: 305 --------YKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
D AAIK +A L P +A L
Sbjct: 430 RQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKL 473
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 238 bits (610), Expect = 7e-70
Identities = 57/350 (16%), Positives = 115/350 (32%), Gaps = 18/350 (5%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 61
NEA + + A+ L+P +SN+ + G +++ +AL I+P + A
Sbjct: 37 TAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKAL 96
Query: 62 SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAY----LNLGNVYKALGMPQEAI-MCYQ 116
A G+ A+ + L F A L +A+ + E +
Sbjct: 97 LRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEG 155
Query: 117 RAVQTRPNAIAFGNLASTY---------YERGQADMAILYYKQAIGCDPRFLEAYNNLGN 167
R Q P+ + + + D A A+ + + N
Sbjct: 156 RGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAN 215
Query: 168 AL--KDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG 225
L K + L+ + AL G + N L A + ++ +
Sbjct: 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT 275
Query: 226 LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYI 285
++ + LA+ + N + + + + ++P +RG Y + +A +D+
Sbjct: 276 PNS-YIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334
Query: 286 RAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
+A ++ P + LA G + + + L P PE
Sbjct: 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF 384
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 218 bits (557), Expect = 2e-62
Identities = 56/336 (16%), Positives = 109/336 (32%), Gaps = 24/336 (7%)
Query: 4 GRLNEAAQCCRQALALNP----LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI 59
G Q L+P N GN EA Y A+ + P +
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 60 AWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 119
+SN++ ++ +GDL + +++ +A+++KP A L + ++LG +A+
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLS 120
Query: 120 QTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 179
A ER A+ + + D L +
Sbjct: 121 LNGDFDGASIE---PMLERNLNKQAMKVLNENLSKD------EGRGSQVLPSNTSLASFF 171
Query: 180 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 239
++ L + + + + + A Y AT ++ K
Sbjct: 172 GIFDSHLEVSSVNTSSNYDTAYA----LLSDALQRLYSATDE------GYLVANDLLTKS 221
Query: 240 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 299
Y +S + AA L G + + DA +I + PT ++
Sbjct: 222 TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYI 280
Query: 300 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
LA D + + K +++A+ L P++P +
Sbjct: 281 FLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHR 316
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 1e-56
Identities = 46/258 (17%), Positives = 81/258 (31%), Gaps = 26/258 (10%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
K E + ++A+ LNP + + G + + A + +A + P
Sbjct: 287 ADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP 346
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
+ LA L + G + ++ E PT P+ + G AI Y A +
Sbjct: 347 YIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406
Query: 121 TRPN-AIAFGNLA----------------STYYERGQADMAILYYKQAIGCDPRFLEAYN 163
+ T + + + AI +A DPR +A
Sbjct: 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKI 466
Query: 164 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 223
L + ++DEAI+ + L + + L AA K L
Sbjct: 467 GLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT--------FAEAAKIQKR-LRAD 517
Query: 224 TGLSAPFNNLAVIYKQQG 241
+SA Y+ +G
Sbjct: 518 PIISAKMELTLARYRAKG 535
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 267 bits (684), Expect = 7e-83
Identities = 48/323 (14%), Positives = 99/323 (30%), Gaps = 11/323 (3%)
Query: 7 NEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAG 66
+ +++ +D +L + Y + P A G
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG 64
Query: 67 LFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG-MPQEAIMCYQRAVQTRPN- 124
+E N + V L P+ P ++ +G Y +G + A +A
Sbjct: 65 TLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY 124
Query: 125 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 184
A+ ++ + D A+ Y A +G A + ++Q
Sbjct: 125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQ 184
Query: 185 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP---------FNNLAV 235
LS+ P P + +G + + A ++ L + NNL
Sbjct: 185 ALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244
Query: 236 IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMA 295
+ ++ YA+A+ + + L + P A G + +G +A+ + A+ +R
Sbjct: 245 VCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT 304
Query: 296 EAHANLASAYKDSGHVEAAIKSY 318
+ L + A
Sbjct: 305 FSVTMLGHCIEMYIGDSEAYIGA 327
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 222 bits (568), Expect = 3e-66
Identities = 43/293 (14%), Positives = 93/293 (31%), Gaps = 45/293 (15%)
Query: 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG-LVQEAYSCYLEALRIQPTFAIAW 61
+ NE + + L P + +G G + A +A ++ T+ AW
Sbjct: 69 LNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAW 128
Query: 62 SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 121
F + ++A+ Y A +L L +G Y + A + +A+
Sbjct: 129 IAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188
Query: 122 RPN-AIAFGNLASTYYERGQADMAILYYKQAIGC---------DPRFLEAYNNLGNALKD 171
P + ++ G+ A ++ A+ ++ NNLG+ +
Sbjct: 189 APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248
Query: 172 VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFN 231
+ + EA+ + Q L L P + + +G
Sbjct: 249 LKKYAEALDYHRQALVLIPQNASTYSAIGY------------------------------ 278
Query: 232 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 284
I+ GN+ +A+ ++ L + + G+ + ++A
Sbjct: 279 ----IHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 219 bits (559), Expect = 6e-65
Identities = 39/310 (12%), Positives = 82/310 (26%), Gaps = 45/310 (14%)
Query: 42 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 101
+ + E++ +LA + D + ++ P
Sbjct: 6 PSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGT 65
Query: 102 YKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQ-ADMAILYYKQAIGCDPRFL 159
L E + V P+ +++ + Y G + A Y +A + +
Sbjct: 66 LVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG 125
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
A+ G++ D+A+ Y L + +G Y
Sbjct: 126 PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL-------------- 171
Query: 220 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 279
N A +++ L I P + G + G
Sbjct: 172 --------------------TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKT 211
Query: 280 AIQDYIRAITIRPTM---------AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 330
A + ++ A+ + NL + A+ ++QAL+L P
Sbjct: 212 AEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAS 271
Query: 331 ATCNLLHTLQ 340
+ +
Sbjct: 272 TYSAIGYIHS 281
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 207 bits (530), Expect = 8e-61
Identities = 37/227 (16%), Positives = 81/227 (35%), Gaps = 12/227 (5%)
Query: 1 MRKGRLNEAA-QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI 59
+ G NE A + +A L A G+ + +A + Y A ++ +
Sbjct: 101 LMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHL 160
Query: 60 AWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 119
+ + + + A +++ +A+ + P P +G V G + A + A+
Sbjct: 161 PMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220
Query: 120 QTRP----------NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNAL 169
+ NL + + A+ Y++QA+ P+ Y+ +G
Sbjct: 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIH 280
Query: 170 KDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML-PAAASY 215
+G + A+ ++ L L+ ++T LG+ + A
Sbjct: 281 SLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 1e-51
Identities = 31/191 (16%), Positives = 69/191 (36%), Gaps = 10/191 (5%)
Query: 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 62
+ ++A A L +G + A + +AL I P
Sbjct: 138 ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMH 197
Query: 63 NLAGLFMESGDLNRALQYYKEAVKL---------KPTFPDAYLNLGNVYKALGMPQEAIM 113
+ + ++G+ A +++ +A++ + NLG+V + L EA+
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257
Query: 114 CYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV 172
+++A+ P A + + + G + A+ Y+ A+G + LG+ ++
Sbjct: 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMY 317
Query: 173 GRVDEAIQCYN 183
EA +
Sbjct: 318 IGDSEAYIGAD 328
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 264 bits (676), Expect = 3e-80
Identities = 62/344 (18%), Positives = 118/344 (34%), Gaps = 32/344 (9%)
Query: 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 83
V+ H LG + A G + +A S + A+ P IA+ A +F+ G AL +
Sbjct: 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 85
Query: 84 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----------------AIA 127
++LK F A L G++ G EA +++ +++ P+
Sbjct: 86 VIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR 145
Query: 128 FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 187
+ A + G AI + + + E G +AI
Sbjct: 146 LRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 205
Query: 188 LQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYK--------- 238
L+ + +A + +Y + + S + L + F + + K
Sbjct: 206 LKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 265
Query: 239 ---QQGNYADAISCYNEVLRIDP----LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR 291
+ G Y DA S Y V++ +P + + + + +AI+ + +
Sbjct: 266 ELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325
Query: 292 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
P A + A AY + AI+ Y+ A + + L
Sbjct: 326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL 369
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 251 bits (643), Expect = 2e-75
Identities = 54/359 (15%), Positives = 111/359 (30%), Gaps = 58/359 (16%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+ G+ A + + L A G+L+ QG + EA + + L+ P+
Sbjct: 71 LAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEE 130
Query: 61 WSNLAGLF---------------MESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 105
+ L SGD A+ + + +++ + +
Sbjct: 131 KEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKE 190
Query: 106 GMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNN 164
G P++AI + A + + N AF +++ YY+ G ++++ ++ + D + +
Sbjct: 191 GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 250
Query: 165 L------------GNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAA 212
L GR +A Y + +PS +
Sbjct: 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRS------------- 297
Query: 213 ASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYK 272
+ + + +AI +EVL+++P + L +R Y
Sbjct: 298 -----------------KERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340
Query: 273 EIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 331
+AIQDY A + L A + + + E
Sbjct: 341 IEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEI 399
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 7e-53
Identities = 47/302 (15%), Positives = 89/302 (29%), Gaps = 35/302 (11%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
G A + L + + +G ++A S A +++ A
Sbjct: 154 FGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA 213
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA------------LGMP 108
+ ++ L+ + GD +L +E +KL + + V K G
Sbjct: 214 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 273
Query: 109 QEAIMCYQRAVQTRPN-----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYN 163
+A Y+ ++T P+ + + + + + AI + + +P + A
Sbjct: 274 TDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333
Query: 164 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 223
+ A DEAIQ Y + Q L YYK
Sbjct: 334 DRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS-QKRDYYKI----- 387
Query: 224 TGLSAPFNNLAVIYKQQGNYADAISCY-NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ 282
L V K+ + I Y L+ P + K+ + A +
Sbjct: 388 ---------LGV--KRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKE 436
Query: 283 DY 284
Sbjct: 437 VL 438
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 183 bits (467), Expect = 8e-51
Identities = 57/348 (16%), Positives = 114/348 (32%), Gaps = 50/348 (14%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ---------------GLVQEAYS 45
+++G+L+EA ++ L NP + L+K+ G A +
Sbjct: 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164
Query: 46 CYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 105
+ L + A A F++ G+ +A+ K A KLK +A+ + +Y L
Sbjct: 165 FLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL 224
Query: 106 GMPQEAIMCYQRAVQTRP-NAIAFGNL------------ASTYYERGQADMAILYYKQAI 152
G + ++ + ++ + F + A G+ A Y+ +
Sbjct: 225 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM 284
Query: 153 GCDPRF----LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNM 208
+P + + + + + EAI+ ++ L ++P + AL + Y+ M
Sbjct: 285 KTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM 344
Query: 209 LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 268
A Y+ L + Y ++L + A
Sbjct: 345 YDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRD--YYKILGVKRNA-------- 394
Query: 269 NTYKEIGRVTDAIQDYI-RAITIRPTMAEAHANLASAYKDSGHVEAAI 315
+EI I+ Y A+ P + A K + AA
Sbjct: 395 -KKQEI------IKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAK 435
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 2e-37
Identities = 41/275 (14%), Positives = 85/275 (30%), Gaps = 38/275 (13%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+++G +A + A L +A + L G + + S E L++
Sbjct: 188 IKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRC 247
Query: 61 WSNLAGL------------FMESGDLNRALQYYKEAVKLKPTFPD----AYLNLGNVYKA 104
+++ + + G A Y+ +K +P+ + + + + +
Sbjct: 248 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK 307
Query: 105 LGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYN 163
P EAI +Q P+ A + A Y D AI Y+ A + +
Sbjct: 308 DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIRE 367
Query: 164 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 223
L A + + + + + + + + ++W+ P
Sbjct: 368 GLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH--PDNFQNE------- 418
Query: 224 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 258
K+ + A A EVL DP
Sbjct: 419 -------EEKKKAEKKFIDIAAAK----EVL-SDP 441
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 4e-30
Identities = 28/191 (14%), Positives = 59/191 (30%), Gaps = 26/191 (13%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
+++ G L +++ + L LG + L A S + A
Sbjct: 4 HHHHSSGVDLGTENLYFQSMADVEKHL-----------ELGKKLLAAGQLADALSQFHAA 52
Query: 220 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 279
+ + A ++ G A+ +V+++ + RG+ + G++ +
Sbjct: 53 VDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDE 112
Query: 280 AIQDYIRAITIRPTMAEA---------------HANLASAYKDSGHVEAAIKSYKQALLL 324
A D+ + + P+ E + A SG AAI + L +
Sbjct: 113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172
Query: 325 RPDFPEATCNL 335
E
Sbjct: 173 CVWDAELRELR 183
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 268 bits (685), Expect = 1e-76
Identities = 51/338 (15%), Positives = 98/338 (28%), Gaps = 2/338 (0%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
+ QA L P V A ++ G +A VQ +A + P +A ++
Sbjct: 274 ETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 333
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
G + R L +A L P A + G +AL Q + +A P
Sbjct: 334 HDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 393
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
+ +A + + QA G P + A + + + V +
Sbjct: 394 DQVVAIASNG-GKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 452
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
Q L P+ A+ + + +T + +
Sbjct: 453 CQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALAT 512
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+ + + P + + G + + V + +A + P A A+
Sbjct: 513 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 572
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
+ V+ + QA L A + + Q
Sbjct: 573 GGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQ 610
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 261 bits (668), Expect = 2e-74
Identities = 48/338 (14%), Positives = 94/338 (27%), Gaps = 1/338 (0%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
+ QA L P V A ++ +A VQ + + P +A ++
Sbjct: 409 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIAS 468
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
G + + L +A L P A + +AL Q + +A P
Sbjct: 469 HDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTP 528
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
+ +A + + QA G P + A + G + + V +
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 588
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
Q L A+ + + +T + +
Sbjct: 589 CQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALET 648
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+ + + P + + G + + V + +A + A A+
Sbjct: 649 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNN 708
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
+ V+ + QA L PD A + Q
Sbjct: 709 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 746
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 244 bits (624), Expect = 2e-68
Identities = 47/338 (13%), Positives = 94/338 (27%), Gaps = 1/338 (0%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
+ Q L P V A ++ +A VQ+ +A + P +A ++
Sbjct: 443 ETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIAS 502
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
G + R L +A L P A + G +AL Q + +A P
Sbjct: 503 NIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 562
Query: 124 -NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
+A + + QA G + A + + + V +
Sbjct: 563 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVL 622
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
Q L P+ A+ + + +T + +
Sbjct: 623 CQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 682
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+ + + + + + + V + +A + P A A+
Sbjct: 683 VQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 742
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
+ V+ + QA L P A + + Q
Sbjct: 743 GGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQ 780
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 241 bits (617), Expect = 2e-67
Identities = 49/338 (14%), Positives = 95/338 (28%), Gaps = 1/338 (0%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
+ + QA L P V A ++ +A VQ +A + P +A ++
Sbjct: 477 ETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIAS 536
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
G + R L +A L P A + G +AL Q + +A
Sbjct: 537 NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ 596
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
+A + + QA G P + A + + + V +
Sbjct: 597 VQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVL 656
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
Q L P A+ + G + +T + +
Sbjct: 657 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALET 716
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+ + + P + + G + + V + +A + P A A+
Sbjct: 717 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNI 776
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
+ V+ + Q L A + + Q
Sbjct: 777 GGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQ 814
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 235 bits (600), Expect = 3e-65
Identities = 47/338 (13%), Positives = 92/338 (27%), Gaps = 1/338 (0%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
+ QA L P V A ++ G +A VQ +A + P +A ++
Sbjct: 511 ATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 570
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
G + R L +A L A + +AL Q + +A P
Sbjct: 571 NGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTP 630
Query: 124 -NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
+A + + QA G P + A + G + + V +
Sbjct: 631 AQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 690
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
Q L A+ + + +T + +
Sbjct: 691 CQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 750
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+ + + P + + + + V + + + A A+
Sbjct: 751 VQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNI 810
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
+ V+ + QA L D A + + Q
Sbjct: 811 GGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQ 848
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 218 bits (557), Expect = 1e-59
Identities = 47/338 (13%), Positives = 93/338 (27%), Gaps = 1/338 (0%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
+ QA L P V A ++ G +A VQ +A + +A ++
Sbjct: 545 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIAS 604
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
G + R L +A L P A + +AL Q + +A P
Sbjct: 605 NIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 664
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
+ +A + + QA G + A + + + V +
Sbjct: 665 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVL 724
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
Q L P A+ + G + +T + +
Sbjct: 725 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALET 784
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+ + + + + + + V + +A + A A+
Sbjct: 785 VQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNI 844
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
+ V+ + Q L PD A + + Q
Sbjct: 845 GGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQ 882
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 217 bits (555), Expect = 2e-59
Identities = 45/329 (13%), Positives = 90/329 (27%), Gaps = 1/329 (0%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
+ QA L + V A ++ +A VQ +A + P +A ++
Sbjct: 579 ETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIAS 638
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
G + R L +A L P A + G +AL Q + +A
Sbjct: 639 HDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ 698
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
+A + + QA G P + A + G + + V +
Sbjct: 699 EQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 758
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
Q L P+ A+ + + +T + +
Sbjct: 759 CQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALET 818
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+ + + + + + + V + + + P A A+
Sbjct: 819 VQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNI 878
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEA 331
+ V+ + Q L D A
Sbjct: 879 GGKQALETVQRLLPVLCQDHGLTLDQVVA 907
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 215 bits (549), Expect = 1e-58
Identities = 43/345 (12%), Positives = 87/345 (25%), Gaps = 7/345 (2%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAH-----SNLGNLMKAQGLVQEAYSCYLEALRIQPT 56
L A + + P + L+ +A L++
Sbjct: 97 HPAALGTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTG 156
Query: 57 FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQ 116
+ + G+ + L P A + +AL Q +
Sbjct: 157 QLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLC 216
Query: 117 RAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV 175
+A P +A + + QA G P + A + + + V
Sbjct: 217 QAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETV 276
Query: 176 DEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAV 235
+ Q L P A+ + G + +T +
Sbjct: 277 QRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDG 336
Query: 236 IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMA 295
+ + + + P + + G + + V + +A + P
Sbjct: 337 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQV 396
Query: 296 EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
A A+ + V+ + QA L PD A + Q
Sbjct: 397 VAIASNG-GKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQ 440
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 2e-51
Identities = 41/344 (11%), Positives = 88/344 (25%), Gaps = 19/344 (5%)
Query: 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA-- 60
K ++ +AL + H+++ L + + Y + P
Sbjct: 67 KPKVRSTVAQHHEALVGHGF---THAHIVALSQHPAALGTVAVTYQHIITALPEATHEDI 123
Query: 61 ---WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 117
+G L A + ++L G V EA+ +
Sbjct: 124 VGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAM-----EAVHASRN 178
Query: 118 AVQTRP------NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKD 171
A+ P +A + + QA G P + A + +
Sbjct: 179 ALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQA 238
Query: 172 VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFN 231
+ + + Q L P A+ + + +T
Sbjct: 239 LETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 298
Query: 232 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR 291
+ + + + + P + + + + V + +A +
Sbjct: 299 SHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 358
Query: 292 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
P A A+ + V+ + QA L PD A +
Sbjct: 359 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 402
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 187 bits (475), Expect = 3e-49
Identities = 45/338 (13%), Positives = 91/338 (26%), Gaps = 2/338 (0%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
+ QA L P V A ++ +A VQ +A + P +A ++
Sbjct: 613 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 672
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
G + R L +A L A + +AL Q + +A P
Sbjct: 673 NGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP 732
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
+ +A + + QA G P + A + + + V +
Sbjct: 733 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVL 792
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
Q L + A+ + + +T + +
Sbjct: 793 CQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALET 852
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+ + + P + + + + V + + + A A+
Sbjct: 853 VQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNG 912
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
+ V+ + Q L PD A + Q
Sbjct: 913 G-KQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQ 949
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 187 bits (475), Expect = 3e-49
Identities = 44/329 (13%), Positives = 89/329 (27%), Gaps = 2/329 (0%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
+ QA L P V A ++ G +A VQ +A + +A ++
Sbjct: 647 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIAS 706
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
G + R L +A L P A + G +AL Q + +A P
Sbjct: 707 NNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 766
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
+A + + Q G + A + + + V +
Sbjct: 767 AQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVL 826
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
Q L A+ + + +T + +
Sbjct: 827 CQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALET 886
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+ + + + + G + + V + + + P A A+ +
Sbjct: 887 VQRLLPVLCQDHGLTLDQVVAIASNGG-KQALETVQRLLPVLCQDHGLTPDQVVAIASNS 945
Query: 303 SAYKDSGHVEAAIKSYKQALLLRPDFPEA 331
+ V+ + Q L P+ A
Sbjct: 946 GGKQALETVQRLLPVLCQDHGLTPNQVVA 974
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 1e-43
Identities = 44/334 (13%), Positives = 90/334 (26%), Gaps = 22/334 (6%)
Query: 25 DAHSNLGNLMKAQGLVQEAYSC-----------YLEALRIQPTFAIAWSNLAGLFMESGD 73
DA ++ G Q+ + EAL +++ L
Sbjct: 44 DASPAAQVDLRTLGYSQQQQEKIKPKVRSTVAQHHEALVGH---GFTHAHIVALSQHPAA 100
Query: 74 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAS 133
L Y+ + P + + EA++ ++ P + G L
Sbjct: 101 LGTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVK 160
Query: 134 TYYERG--QADMAILYYKQAIGCDPRFL-----EAYNNLGNALKDVGRVDEAIQCYNQCL 186
+RG A A+ + A+ P L A + + + V + Q
Sbjct: 161 -IAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAH 219
Query: 187 SLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADA 246
L P+ A+ + + + + +
Sbjct: 220 GLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRL 279
Query: 247 ISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 306
+ + + P + + G + + V + +A + P A A+ +
Sbjct: 280 LPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQ 339
Query: 307 DSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
V+ + QA L PD A + Q
Sbjct: 340 ALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 373
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 3e-42
Identities = 41/329 (12%), Positives = 82/329 (24%), Gaps = 10/329 (3%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
+ QA L V A ++ +A VQ +A + P +A ++
Sbjct: 681 ETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 740
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
G + R L +A L P A + +AL Q + +
Sbjct: 741 NGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTL 800
Query: 124 -NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
+A + + QA G + A + + + V +
Sbjct: 801 AQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVL 860
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ-- 240
Q L P A+ + + +T +A+
Sbjct: 861 CQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLT-----LDQVVAIASNGGKQ 915
Query: 241 --GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 298
+ + + P + + + + V + + + P A
Sbjct: 916 ALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAI 975
Query: 299 ANLASAYKDSGHVEAAIKSYKQALLLRPD 327
A+ V + L D
Sbjct: 976 ASNGGKQALESIVAQLSRPDPALAALTND 1004
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 9e-26
Identities = 36/298 (12%), Positives = 72/298 (24%), Gaps = 10/298 (3%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
+ QA L P V A ++ +A VQ + + +A ++
Sbjct: 749 ETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIAS 808
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
G + R L +A L A + +AL Q + + P
Sbjct: 809 NIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTP 868
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
+ +A + + Q G + A + G + + V +
Sbjct: 869 DQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGK-QALETVQRLLPVL 927
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
Q L P A+ + + +T + +
Sbjct: 928 CQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASNGGKQALESI 987
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN 300
A + + L G A+ + + P +
Sbjct: 988 VAQLSRPDPALAALTNDHLVALACLGG--------RPAMDAVKKGLPHAPELIRRVNR 1037
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 6e-24
Identities = 40/266 (15%), Positives = 78/266 (29%), Gaps = 12/266 (4%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
+ Q L V A ++ +A VQ +A + +A ++
Sbjct: 783 ETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIAS 842
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
G + R L + L P A + +AL Q + +
Sbjct: 843 NIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTL 902
Query: 124 NAIAFGNLASTYYER--GQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 181
+ + +AS ++ + Q G P + A + + + V +
Sbjct: 903 DQVVA--IASNGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPV 960
Query: 182 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQG 241
Q L P+ A+ + G +++ + A A+T N+ V G
Sbjct: 961 LCQDHGLTPNQVVAIASNGGKQALESIVAQLSRPDPALAALT-------NDHLVALACLG 1013
Query: 242 NYADAISCYNEVLRIDPLAADGLVNR 267
A+ + L P + R
Sbjct: 1014 GRP-AMDAVKKGLPHAPELIRRVNRR 1038
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 255 bits (652), Expect = 4e-76
Identities = 51/367 (13%), Positives = 103/367 (28%), Gaps = 34/367 (9%)
Query: 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK-------------AQGLVQEAYSCYLE 49
+L E A A L + + + ++ Y E
Sbjct: 123 MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDE 182
Query: 50 ALRIQPTFAIAWSNLAGLFMES------------GDLNRALQYYKEAVKLKPTFPDAYLN 97
+ SNL ES L E KLK + +
Sbjct: 183 SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242
Query: 98 LGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPR 157
G P A ++A++ P ++ +A +R + Y+ +A+ D
Sbjct: 243 TGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN 302
Query: 158 FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYK 217
Y + G + D+A + +++ L P + L + N + +
Sbjct: 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362
Query: 218 ATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY------ 271
N A I + ++ A+ Y+ + ++ V
Sbjct: 363 EAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL 422
Query: 272 ---KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 328
+ +A +A + P +A LA ++ AI ++++ L
Sbjct: 423 TRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482
Query: 329 PEATCNL 335
E +
Sbjct: 483 EEKLQAI 489
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 248 bits (636), Expect = 1e-73
Identities = 46/317 (14%), Positives = 102/317 (32%), Gaps = 29/317 (9%)
Query: 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 62
E + L L + + G + A+ +A+ + P ++
Sbjct: 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN-SYI 274
Query: 63 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 122
+A + + D Y+ +A+KL Y + G + L +A + +A +
Sbjct: 275 YMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD 334
Query: 123 PN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 181
P + LA Y + D + +A P E N L D D+A++
Sbjct: 335 PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQ 394
Query: 182 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQG 241
Y+ + L+ + + + +L
Sbjct: 395 YDLAIELENKLDGIYVGIAPLVGKATLLTR-------------------------NPTVE 429
Query: 242 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 301
N+ +A + + ++DP + + + + +AI + + + TM E +
Sbjct: 430 NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489
Query: 302 ASAYKDSGHVEAAIKSY 318
+ ++ V+ I+S
Sbjct: 490 --TFAEAAKVQQRIRSD 504
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 225 bits (574), Expect = 6e-65
Identities = 54/365 (14%), Positives = 120/365 (32%), Gaps = 33/365 (9%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
R + ++A + AL L V +SNL + G +++ +AL ++P ++
Sbjct: 17 FRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKV 75
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDA----YLNLGNVYKALGMPQEAIMCYQ 116
A G A+ + L F DA L +A+ +E
Sbjct: 76 LLRRASANEGLGKFADAMFDLS-VLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDID 134
Query: 117 RAVQTRPN--------------AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAY 162
A T + ++++ + ++ Y ++ D +
Sbjct: 135 TATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194
Query: 163 NNLGNAL------------KDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP 210
+NL K +E + N+ L+ +L + G N
Sbjct: 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL 254
Query: 211 AAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNT 270
A K + + +++ + +A+I + + + + +++ L++D + +RG
Sbjct: 255 GAHEDIKKAIELFPRVNS-YIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQM 313
Query: 271 YKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 330
+ A +D+ +A + P + LA + + +A P+ PE
Sbjct: 314 NFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE 373
Query: 331 ATCNL 335
Sbjct: 374 VPNFF 378
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 216 bits (552), Expect = 6e-62
Identities = 42/369 (11%), Positives = 93/369 (25%), Gaps = 32/369 (8%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF--- 57
+ G L + + +AL L P + + G +A L + F
Sbjct: 50 VSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDL-SVLSLNGDFNDA 108
Query: 58 -AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAY-------------LNLGNVYK 103
L A + +
Sbjct: 109 SIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168
Query: 104 ALGMPQEAIMCYQRAVQTRPNAI-AFGNLA----STYYERGQA--------DMAILYYKQ 150
+ P+ Y + + + NL +Y + ++ + + +
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228
Query: 151 AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP 210
+ + + G A + + + L P + + I + N
Sbjct: 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDST 287
Query: 211 AAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNT 270
+Y+ L + + S+ + + + NY A +++ +DP +
Sbjct: 288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACL 347
Query: 271 YKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 330
+ D + A P E A D + A+K Y A+ L
Sbjct: 348 AYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407
Query: 331 ATCNLLHTL 339
+ +
Sbjct: 408 IYVGIAPLV 416
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 201 bits (512), Expect = 2e-56
Identities = 39/345 (11%), Positives = 95/345 (27%), Gaps = 31/345 (8%)
Query: 20 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ 79
A + GN +A Y AL ++ + +SNL+ ++ GDL + ++
Sbjct: 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVE 60
Query: 80 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR-AVQTRPN---AIAFGNLASTY 135
+A++LKP + L + + LG +A+ ++ N
Sbjct: 61 MSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNK 120
Query: 136 YERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV-------------GRVDEAIQCY 182
+ A ++ + + Y
Sbjct: 121 QAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANY 180
Query: 183 NQCLSLQPSHPQALTNLGNIYMEW------------NMLPAAASYYKATLAVTTGLSAPF 230
++ L+NL E + + L+
Sbjct: 181 DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240
Query: 231 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 290
+ + + + A + + + P + + + T+ + +A+ +
Sbjct: 241 EHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYYNYFDKALKL 299
Query: 291 RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
+ + + + + A K + +A L P+ L
Sbjct: 300 DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 186 bits (475), Expect = 2e-51
Identities = 32/215 (14%), Positives = 64/215 (29%), Gaps = 10/215 (4%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+ E +AL L+ + + G + +A + +A + P
Sbjct: 281 ADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFP 340
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
+ LA L + + EA + P P+ + +A+ Y A++
Sbjct: 341 YIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400
Query: 121 TRPN-AIAFGNLASTYYER---------GQADMAILYYKQAIGCDPRFLEAYNNLGNALK 170
+ +A + A ++A DPR +A L
Sbjct: 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKL 460
Query: 171 DVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME 205
+DEAI + + L + + L +
Sbjct: 461 QQEDIDEAITLFEESADLARTMEEKLQAITFAEAA 495
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 246 bits (630), Expect = 4e-75
Identities = 46/318 (14%), Positives = 90/318 (28%), Gaps = 50/318 (15%)
Query: 38 GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLN 97
G + + + Y + ++ +L A ++ + P +A+ +
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 98 LGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDP 156
LG AI+ A P LA ++ A+ A+ + + P
Sbjct: 61 LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120
Query: 157 RFLEAYN---------------NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGN 201
++ + + + E + L + P+ Q +LG
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG- 179
Query: 202 IYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAA 261
V+Y NY A + + + P A
Sbjct: 180 ---------------------------------VLYNLSNNYDSAAANLRRAVELRPDDA 206
Query: 262 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 321
G T R +A+ Y RA+ I P N+A +Y + + A K +A
Sbjct: 207 QLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266
Query: 322 LLLRPDFPEATCNLLHTL 339
+ ++ T
Sbjct: 267 IYMQVGGTTPTGEASREA 284
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 240 bits (614), Expect = 9e-73
Identities = 43/355 (12%), Positives = 88/355 (24%), Gaps = 63/355 (17%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G + + + + G M + EA + + P AW +
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
L E+ A+ A L P + L + A+ + + ++P
Sbjct: 61 LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120
Query: 124 N----------------AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN 167
+ + + + A+ +P + + +LG
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180
Query: 168 ALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS 227
D A + + L+P Q
Sbjct: 181 LYNLSNNYDSAAANLRRAVELRPDDAQL-------------------------------- 208
Query: 228 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRA 287
+N L +A+ YN L I+P + N +Y + + A + +RA
Sbjct: 209 --WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266
Query: 288 ITIRPTMAEAHAN------------LASAYKDSGHVEAAIKSYKQAL-LLRPDFP 329
I ++ + +Y Q + +F
Sbjct: 267 IYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG 321
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 215 bits (549), Expect = 2e-63
Identities = 36/268 (13%), Positives = 78/268 (29%), Gaps = 38/268 (14%)
Query: 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 62
+ A A L+P + H+ L + A + L QP + S
Sbjct: 68 NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGS 127
Query: 63 ---------------NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM 107
+ F + A+++ P + +LG +Y
Sbjct: 128 VNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNN 187
Query: 108 PQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLG 166
A +RAV+ RP+ A + L +T + A+ Y +A+ +P ++ N+
Sbjct: 188 YDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA 247
Query: 167 NALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGL 226
+ ++ + D A + + + +Q + +++ L
Sbjct: 248 VSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASR-----EATRSMWDFFRMLL------ 296
Query: 227 SAPFNNLAVIYKQQGNYADAISCYNEVL 254
Y + +
Sbjct: 297 -----------NVMNRPDLVELTYAQNV 313
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 1e-41
Identities = 31/189 (16%), Positives = 51/189 (26%), Gaps = 23/189 (12%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
E AL +NP H++LG L A + A+ ++P A
Sbjct: 149 AAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL 208
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
W+ L AL Y A+ + P + N+ Y + A RA+
Sbjct: 209 WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268
Query: 121 TRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 179
+ G + ++ L + R D
Sbjct: 269 MQVGGTTPTGEASREATR----------------------SMWDFFRMLLNVMNRPDLVE 306
Query: 180 QCYNQCLSL 188
Y Q +
Sbjct: 307 LTYAQNVEP 315
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 5e-30
Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 12/141 (8%)
Query: 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 62
+ AA R+A+ L P + LG + QEA Y AL I P +
Sbjct: 185 SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMY 244
Query: 63 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLN------------LGNVYKALGMPQE 110
N+A + + A + A+ ++ + + P
Sbjct: 245 NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304
Query: 111 AIMCYQRAVQTRPNAIAFGNL 131
+ Y + V+ ++
Sbjct: 305 VELTYAQNVEPFAKEFGLQSM 325
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 242 bits (620), Expect = 4e-73
Identities = 52/330 (15%), Positives = 104/330 (31%), Gaps = 28/330 (8%)
Query: 35 KAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD-LNRALQYYKEAVKLKPTFP- 92
+A+ ++ + ++Q A D + Y + + + P
Sbjct: 5 RAKSAIESDVDFWD---KLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPL 61
Query: 93 ---DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYY 148
G G A++ ++ AVQ P A+ L +T E Q +AI
Sbjct: 62 RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISAL 121
Query: 149 KQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL---------TNL 199
++ + P A L + + +A + L P++ + L
Sbjct: 122 RRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL 181
Query: 200 GNIYMEWNMLP-------AAASYYKATLAVTTGLSAPF--NNLAVIYKQQGNYADAISCY 250
G L + A + + P L V++ G Y A+ C+
Sbjct: 182 GPSKRILGSLLSDSLFLEVKELFLAA-VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCF 240
Query: 251 NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGH 310
L + P G T + +A+ Y RA+ ++P + NL + + G
Sbjct: 241 TAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 300
Query: 311 VEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
A++ + +AL ++ +
Sbjct: 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSE 330
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 238 bits (610), Expect = 1e-71
Identities = 48/357 (13%), Positives = 98/357 (27%), Gaps = 68/357 (19%)
Query: 7 NEAAQCCRQALALNP----LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 62
+ + + G +G + A + A++ P AW
Sbjct: 43 DLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQ 102
Query: 63 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 122
L E+ A+ + ++LKP A + L + + ++A + ++
Sbjct: 103 YLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT 162
Query: 123 PN----------AIAFGNLASTYYERG------QADMAILYYKQAIGCDPRFLEA--YNN 164
P L + G + A+ DP ++
Sbjct: 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222
Query: 165 LGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT 224
LG G D+A+ C+ LS++P+ LG
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGA----------------------- 259
Query: 225 GLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 284
+A++ Y L + P N G + +G +A++ +
Sbjct: 260 -----------TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 308
Query: 285 IRAITIRPTMAEAHANLAS-----------AYKDSGHVEAAIKSYKQAL-LLRPDFP 329
+ A+ ++ + A G +A + + L L F
Sbjct: 309 LEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 365
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 223 bits (570), Expect = 4e-66
Identities = 49/273 (17%), Positives = 93/273 (34%), Gaps = 43/273 (15%)
Query: 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 62
+ A R+ L L P A L + L ++A + LR P +A +
Sbjct: 111 NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 170
Query: 63 ---------------NLAGLFMESGDLNRALQYYKEAVKLKPTFPDA--YLNLGNVYKAL 105
+ G + + + AV+L PT D LG ++
Sbjct: 171 PAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 230
Query: 106 GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNN 164
G +A+ C+ A+ RPN + + L +T Q++ A+ Y++A+ P ++ + N
Sbjct: 231 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 290
Query: 165 LGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME-WNMLPAAASYYKATLAVT 223
LG + ++G EA++ + + L++Q G + W
Sbjct: 291 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW----------------- 333
Query: 224 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 256
+ L + G + L
Sbjct: 334 -------STLRLALSMLGQSDAYGAADARDLST 359
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 9e-45
Identities = 37/191 (19%), Positives = 66/191 (34%), Gaps = 26/191 (13%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDA--HSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA 58
+ E + A+ L+P +D LG L G +A C+ AL ++P
Sbjct: 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY 251
Query: 59 IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRA 118
+ W+ L A+ Y+ A++L+P + + NLG LG +EA+ + A
Sbjct: 252 LLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 311
Query: 119 VQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDE 177
+ + G + ++ L AL +G+ D
Sbjct: 312 LNMQRKSRGPRGEGGAMSE-----------------------NIWSTLRLALSMLGQSDA 348
Query: 178 AIQCYNQCLSL 188
+ LS
Sbjct: 349 YGAADARDLST 359
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 5e-33
Identities = 28/221 (12%), Positives = 63/221 (28%), Gaps = 33/221 (14%)
Query: 148 YKQAIGCDPRFLEAYNNLGNALKDVGRV------------DEAIQCYNQCLSLQPSHP-- 193
+++A ++ ++ L L+++ + D Y++ + +P
Sbjct: 3 FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62
Query: 194 --QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYN 251
G ++ LP A ++A + + L + AIS
Sbjct: 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122
Query: 252 EVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN---------LA 302
L + P L+ ++ A + + P A L
Sbjct: 123 RCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG 182
Query: 303 SAYKDSGHV------EAAIKSYKQALLLRPDFPEAT--CNL 335
+ + G + + + A+ L P + C L
Sbjct: 183 PSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 232 bits (594), Expect = 9e-71
Identities = 41/247 (16%), Positives = 81/247 (32%), Gaps = 1/247 (0%)
Query: 89 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYY 148
+ D GN + EAI Y +A + + N A+ YE+G+ + AI
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTL 61
Query: 149 KQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNM 208
A+ Y + + +G + + + +I +
Sbjct: 62 NDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL-TEHRTADILTKLRN 120
Query: 209 LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 268
+A V + Y + ++ +A+ Y E+++ P A G NR
Sbjct: 121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRA 180
Query: 269 NTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 328
++ +AI D +AI P A+ A+A +A+++ A +
Sbjct: 181 AALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV 240
Query: 329 PEATCNL 335
+
Sbjct: 241 NNGSSAR 247
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 220 bits (562), Expect = 3e-66
Identities = 34/278 (12%), Positives = 77/278 (27%), Gaps = 35/278 (12%)
Query: 25 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 84
D GN EA Y +A + +N A E G+ A+ +A
Sbjct: 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAISTLNDA 64
Query: 85 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMA 144
V+ Y + + +G + ++ ++ ++ A + A+
Sbjct: 65 VEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKE 124
Query: 145 ILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 204
+ + +P E G A++ Y + + P +
Sbjct: 125 LKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG--------- 175
Query: 205 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL 264
++N A + ++ +AI+ N+ + DP
Sbjct: 176 -------------------------YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAY 210
Query: 265 VNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
+ + + A++ A T + +
Sbjct: 211 IRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 248
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 189 bits (483), Expect = 4e-55
Identities = 29/208 (13%), Positives = 58/208 (27%), Gaps = 4/208 (1%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
KG A A+ + + + G + +
Sbjct: 49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL-T 107
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
A + + + + L+ + + P + G Y A+ Y ++
Sbjct: 108 EHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK 167
Query: 121 TRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 179
P A + N A+ + AI +AI DP F+ AY A V A+
Sbjct: 168 RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL 227
Query: 180 QCYNQCLSLQPSHPQALTNLG--NIYME 205
+ + + + +Y +
Sbjct: 228 ETLDAARTKDAEVNNGSSAREIDQLYYK 255
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 3e-33
Identities = 25/151 (16%), Positives = 46/151 (30%), Gaps = 9/151 (5%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+ + + +NP + G + A Y E ++ P A
Sbjct: 116 TKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG 175
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
+SN A + A+ +A++ P F AY+ A+ A+ A
Sbjct: 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235
Query: 121 TRPNAIAFGNLASTYYERGQADMAILYYKQA 151
+ + R + LYYK +
Sbjct: 236 KDA------EVNNGSSARE---IDQLYYKAS 257
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 229 bits (586), Expect = 7e-70
Identities = 43/206 (20%), Positives = 82/206 (39%), Gaps = 1/206 (0%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
G +AA+ +A+ N + N NL+ + ++ A + Y +AL + + A A
Sbjct: 34 SEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATA 93
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
+ +++ A +++A++ D + LG V L P+ A+ QRAV+
Sbjct: 94 YYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE 153
Query: 121 TRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 179
N A G D A+ + DP +A+ N G ++A+
Sbjct: 154 LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL 213
Query: 180 QCYNQCLSLQPSHPQALTNLGNIYME 205
+ ++ + +QP H AL +
Sbjct: 214 EMLDKAIDIQPDHMLALHAKKLLGHH 239
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 228 bits (585), Expect = 1e-69
Identities = 38/272 (13%), Positives = 79/272 (29%), Gaps = 39/272 (14%)
Query: 74 LNRALQYYKEAVKLKPTFPDAYLNLGNVY----KALGMPQEAIMCYQRAVQTRPN-AIAF 128
+ + ++ + L P G G ++A + +A++ AI +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60
Query: 129 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 188
N A+ + + A+ +Y +A+ D AY GN EA + + L
Sbjct: 61 INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120
Query: 189 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 248
+ F L + + A+
Sbjct: 121 GMENGDL----------------------------------FYMLGTVLVKLEQPKLALP 146
Query: 249 CYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 308
+ ++ + G G + +A+ + P A+A N Y
Sbjct: 147 YLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYK 206
Query: 309 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
+ E A++ +A+ ++PD A
Sbjct: 207 ENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 227 bits (580), Expect = 4e-69
Identities = 45/276 (16%), Positives = 92/276 (33%), Gaps = 39/276 (14%)
Query: 40 VQEAYSCYLEALRIQPTFAIAWSNLA----GLFMESGDLNRALQYYKEAVKLKPTFPDAY 95
+ ++ + + + P + S G E GD +A + + +A++ Y
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60
Query: 96 LNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGC 154
+N N+ ++ + A+ Y +A++ + A A+ + Y + A +++A+
Sbjct: 61 INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120
Query: 155 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 214
+ + LG L + + A+ + + L + +A G
Sbjct: 121 GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL----------- 169
Query: 215 YYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 274
+G +A+S + V DP AD N G TY
Sbjct: 170 -----------------------ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYK 206
Query: 275 GRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGH 310
A++ +AI I+P A H
Sbjct: 207 ENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 225 bits (576), Expect = 2e-68
Identities = 55/276 (19%), Positives = 94/276 (34%), Gaps = 39/276 (14%)
Query: 6 LNEAAQCCRQALALNPLLVDAHSNLGN----LMKAQGLVQEAYSCYLEALRIQPTFAIAW 61
+ + + L P S G G ++A + +A+ AI +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60
Query: 62 SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 121
N A L +L RAL +Y +A++L + AY GNVY M +EA +++A++
Sbjct: 61 INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120
Query: 122 RPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 180
F L + + Q +A+ Y ++A+ + EA G L + G +DEA+
Sbjct: 121 GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180
Query: 181 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 240
+ P H A F N V Y +
Sbjct: 181 QFAAVTEQDPGHADA----------------------------------FYNAGVTYAYK 206
Query: 241 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR 276
N A+ ++ + I P L +
Sbjct: 207 ENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 2e-40
Identities = 25/139 (17%), Positives = 44/139 (31%), Gaps = 1/139 (0%)
Query: 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 62
K EA +AL D LG ++ + A A+ + A
Sbjct: 104 KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARF 163
Query: 63 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 122
G L+ AL + + P DA+ N G Y ++A+ +A+ +
Sbjct: 164 QFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223
Query: 123 PN-AIAFGNLASTYYERGQ 140
P+ +A +
Sbjct: 224 PDHMLALHAKKLLGHHHHH 242
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 221 bits (566), Expect = 1e-66
Identities = 43/273 (15%), Positives = 81/273 (29%), Gaps = 18/273 (6%)
Query: 19 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 78
+N D + + EA + + + ++ A + E + A
Sbjct: 1 MND---DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQ 57
Query: 79 QY---YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLAST 134
+ Y V + G + G AI YQ AV +G + S
Sbjct: 58 KDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117
Query: 135 YYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ 194
+Y +G +AI Y ++ I + + LG A +A + + L L+P+
Sbjct: 118 FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI 177
Query: 195 ALTNLGNIYM---EWNMLPAAASYYKATLAVTTGLSAPFN--------NLAVIYKQQGNY 243
A YY+ + V A + +A Y +
Sbjct: 178 GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237
Query: 244 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR 276
A + + +L +DP + +
Sbjct: 238 VKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 218 bits (558), Expect = 2e-65
Identities = 52/264 (19%), Positives = 83/264 (31%), Gaps = 15/264 (5%)
Query: 92 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILY--- 147
D + EAI + + + N + A YYE + D+A
Sbjct: 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET 62
Query: 148 YKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 207
Y + + G L G+ AIQ Y + + +G+ +
Sbjct: 63 YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG 122
Query: 208 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNR 267
P A Y + + TT F L Y Y A S + +VL + P G + R
Sbjct: 123 NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWR 182
Query: 268 GNTYKEIGRVTD---AIQDYIRAITIRPT--------MAEAHANLASAYKDSGHVEAAIK 316
T A Y + I + + EA+ +A Y + A
Sbjct: 183 ARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242
Query: 317 SYKQALLLRPDFPEATCNLLHTLQ 340
++K L L P +A L L+
Sbjct: 243 AWKNILALDPTNKKAIDGLKMKLE 266
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 188 bits (479), Expect = 2e-54
Identities = 34/218 (15%), Positives = 71/218 (32%), Gaps = 15/218 (6%)
Query: 3 KGRLNEA---AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI 59
+ + A + + G ++ +G A Y A+ T
Sbjct: 50 LAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLD 109
Query: 60 AWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 119
+ + F G+ A+QY ++ ++ T P + LG Y +A + + +
Sbjct: 110 MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVL 169
Query: 120 QTRPN-AIAFGNLASTYYERGQA---DMAILYYKQAI--------GCDPRFLEAYNNLGN 167
+ +PN I + A + +A YY++ I +EA +
Sbjct: 170 ELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAY 229
Query: 168 ALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME 205
+A + L+L P++ +A+ L
Sbjct: 230 YYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 2e-49
Identities = 29/214 (13%), Positives = 62/214 (28%), Gaps = 6/214 (2%)
Query: 124 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI---Q 180
N A ++ AI + + YN ++ + D A +
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 181 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 240
Y ++ + G I M+ A Y+A + T + + + +
Sbjct: 62 TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK 121
Query: 241 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN 300
GN+ AI + +R G Y A +++ + ++P + +
Sbjct: 122 GNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLW 181
Query: 301 LASAYKDSGHV---EAAIKSYKQALLLRPDFPEA 331
A A A Y++ + +
Sbjct: 182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 6e-29
Identities = 26/172 (15%), Positives = 48/172 (27%), Gaps = 28/172 (16%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 61
KG A Q + + LG +A S +++ L ++P I +
Sbjct: 120 NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGY 179
Query: 62 SNLAGLFMESGDLNR---ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRA 118
A + A YY++ +++ Y +
Sbjct: 180 LWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKD--------------------- 218
Query: 119 VQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALK 170
A +A Y A +K + DP +A + L L+
Sbjct: 219 ----ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 4e-20
Identities = 18/120 (15%), Positives = 32/120 (26%), Gaps = 11/120 (9%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLV---QEAYSCYLEALRIQPT- 56
+A + L L P + + AQ A Y + + +
Sbjct: 153 YYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212
Query: 57 -------FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ 109
A +A + + D +A +K + L PT A L +
Sbjct: 213 GAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHHH 272
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 217 bits (554), Expect = 6e-65
Identities = 42/263 (15%), Positives = 72/263 (27%), Gaps = 7/263 (2%)
Query: 63 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 122
L + L R Q G +Y +LG+ A + +A+ R
Sbjct: 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR 73
Query: 123 PN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 181
P+ F L + G D A + + DP + A+ N G AL GR A
Sbjct: 74 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDD 133
Query: 182 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIY---- 237
P+ P L + + A + N+ Y
Sbjct: 134 LLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK--EQWGWNIVEFYLGNI 191
Query: 238 KQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA 297
+Q + + + ++ G Y +G + A + A+
Sbjct: 192 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251
Query: 298 HANLASAYKDSGHVEAAIKSYKQ 320
H G + + Q
Sbjct: 252 HRYALLELSLLGQDQDDLAESDQ 274
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 2e-59
Identities = 38/286 (13%), Positives = 80/286 (27%), Gaps = 39/286 (13%)
Query: 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 62
+ L Q + G L + GL A + + +AL I+P ++
Sbjct: 22 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFN 81
Query: 63 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 122
L ++G+ + A + + ++L PT+ A+LN G G + A Q
Sbjct: 82 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141
Query: 123 PN-AIAFGNLASTYYERGQADMAILY---YKQAIGCDPRFLEAYNNLGNALKDVGRVDEA 178
PN L + + + ++++ + LGN + + ++
Sbjct: 142 PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN-ISEQTLMERL 200
Query: 179 IQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYK 238
SL + L Y
Sbjct: 201 KADATDNTSLAEHLSET----------------------------------NFYLGKYYL 226
Query: 239 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 284
G+ A + + + + +G+ D + +
Sbjct: 227 SLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAES 272
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 4e-55
Identities = 34/221 (15%), Positives = 58/221 (26%), Gaps = 7/221 (3%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 61
G A QALA+ P + + + LG + G AY + L + PT+ A
Sbjct: 55 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH 114
Query: 62 SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 121
N G A + P P L L + L ++A ++ +
Sbjct: 115 LNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD-EKQAKEVLKQHFEK 173
Query: 122 RPN-----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 176
I L E+ + E LG +G +D
Sbjct: 174 SDKEQWGWNIVEFYLG-NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD 232
Query: 177 EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYK 217
A + ++ + +
Sbjct: 233 SATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESD 273
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 5e-40
Identities = 37/214 (17%), Positives = 61/214 (28%), Gaps = 39/214 (18%)
Query: 130 NLASTYYERGQADMAILYYKQAI----GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQC 185
LA Q ++ + +Q + D + G +G A ++Q
Sbjct: 10 VLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQA 69
Query: 186 LSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYAD 245
L+++P P+ FN L + Q GN+
Sbjct: 70 LAIRPDMPEV----------------------------------FNYLGIYLTQAGNFDA 95
Query: 246 AISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAY 305
A ++ VL +DP +NRG GR A D + P L A
Sbjct: 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAE 155
Query: 306 KDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 339
+ + A + KQ + L
Sbjct: 156 QKLDE-KQAKEVLKQHFEKSDKEQWGWNIVEFYL 188
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 1e-32
Identities = 27/180 (15%), Positives = 46/180 (25%), Gaps = 38/180 (21%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLS----LQPSHPQALTNLGNIYMEWNMLPAAASY 215
L L+ + + + Q L+ Q
Sbjct: 6 RKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQL-------------------- 45
Query: 216 YKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG 275
V+Y G A A + +++ L I P + G + G
Sbjct: 46 --------------LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 91
Query: 276 RVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
A + + + + PT AH N A G + A P+ P + L
Sbjct: 92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL 151
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 9/82 (10%), Positives = 21/82 (25%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 61
+ + +L L + + LG + G + A + + A+ +
Sbjct: 193 EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 252
Query: 62 SNLAGLFMESGDLNRALQYYKE 83
G L +
Sbjct: 253 RYALLELSLLGQDQDDLAESDQ 274
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 216 bits (552), Expect = 6e-65
Identities = 39/240 (16%), Positives = 90/240 (37%), Gaps = 4/240 (1%)
Query: 26 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAV 85
H + + + +G L+ + + A+ L +++ G+ +A ++A+
Sbjct: 6 HHHHHSSGLVPRGSHMGD-QNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKAL 64
Query: 86 KLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMA 144
++ P+ DA+ L V++ P+ A Y++A+ + A N YE+ + + A
Sbjct: 65 EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEA 124
Query: 145 ILYYKQAIGC--DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNI 202
+A P + NLG + + +A + + + L L + P + ++
Sbjct: 125 YQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADL 184
Query: 203 YMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD 262
+ A YY + + K + A S ++ R+ P + +
Sbjct: 185 LYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 209 bits (533), Expect = 3e-62
Identities = 43/248 (17%), Positives = 77/248 (31%), Gaps = 6/248 (2%)
Query: 87 LKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAI 145
+ + + + G V + M + + + R A+ L Y +RG + A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMGDQN---PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAK 57
Query: 146 LYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME 205
+ ++A+ DP +A+ L + A + Y + L+ + + L N G E
Sbjct: 58 VPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE 117
Query: 206 WNMLPAAASYYKATLAVT--TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADG 263
A T S F NL ++ Q A A + + LR++
Sbjct: 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSV 177
Query: 264 LVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 323
+ + + A Q Y A + K + A Q
Sbjct: 178 ALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237
Query: 324 LRPDFPEA 331
L P E
Sbjct: 238 LYPGSLEY 245
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 1e-59
Identities = 39/217 (17%), Positives = 71/217 (32%), Gaps = 3/217 (1%)
Query: 8 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGL 67
Q + DA+ LG +G ++A +AL I P+ A A + LA +
Sbjct: 21 MGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVV 80
Query: 68 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--- 124
F + A + Y++A+ N G +EA A Q
Sbjct: 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER 140
Query: 125 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 184
+ F NL + + A Y+++++ + + + L A Q Y+
Sbjct: 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL 200
Query: 185 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 221
+ ++L + + AASY
Sbjct: 201 FAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 3e-57
Identities = 42/198 (21%), Positives = 72/198 (36%), Gaps = 3/198 (1%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+++G +A R+AL ++P DAH+ L + + + + A Y +AL A
Sbjct: 48 LQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARV 107
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVK--LKPTFPDAYLNLGNVYKALGMPQEAIMCYQRA 118
+N G E A Q EA + L P + NLG V + P +A ++++
Sbjct: 108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKS 167
Query: 119 VQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDE 177
++ N +A Y+ + A YY + + K D
Sbjct: 168 LRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDT 227
Query: 178 AIQCYNQCLSLQPSHPQA 195
A Q L P +
Sbjct: 228 AASYGLQLKRLYPGSLEY 245
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 3e-22
Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 3/105 (2%)
Query: 231 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 290
++ ++ + + + A D + G Y + G A +A+ I
Sbjct: 10 HSSGLVPRGSHMGDQN---PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI 66
Query: 291 RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
P+ A+AHA LA ++ + A + Y++AL N
Sbjct: 67 DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY 111
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 10/66 (15%), Positives = 15/66 (22%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
++ A Q + L K A S L+ R+ P
Sbjct: 186 YKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245
Query: 61 WSNLAG 66
A
Sbjct: 246 QEFQAE 251
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 211 bits (540), Expect = 1e-63
Identities = 45/246 (18%), Positives = 77/246 (31%), Gaps = 47/246 (19%)
Query: 89 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILY 147
T L LG ALG A+ ++RA++ P A LA T + G + A+
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61
Query: 148 YKQAIGCDPRFLEAYNNLGNALKDV-----------GRVDEAIQCYNQCLSLQPSHPQAL 196
K + PR+L Y L A + G +++A+ + P +
Sbjct: 62 GKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH 121
Query: 197 TNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 256
G +Y G A + + L +
Sbjct: 122 LQRGLVY----------------------------------ALLGERDKAEASLKQALAL 147
Query: 257 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 316
+ + Y +GR+ +A+ Y +A+ P + ASA G E A +
Sbjct: 148 ED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAAR 206
Query: 317 SYKQAL 322
+
Sbjct: 207 AAALEH 212
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 209 bits (535), Expect = 6e-63
Identities = 45/192 (23%), Positives = 74/192 (38%), Gaps = 11/192 (5%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 61
GR + A +AL NP +A L GLV A + P + +
Sbjct: 17 ALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGY 76
Query: 62 SNLAGLFME-----------SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQE 110
L+ ++ G L +AL K+A ++ P + +L G VY LG +
Sbjct: 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDK 136
Query: 111 AIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALK 170
A ++A+ LA Y G+ D A+ Y +A+ P+ L+ +AL
Sbjct: 137 AEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALL 196
Query: 171 DVGRVDEAIQCY 182
G+ +EA +
Sbjct: 197 LKGKAEEAARAA 208
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 203 bits (520), Expect = 8e-61
Identities = 48/268 (17%), Positives = 79/268 (29%), Gaps = 57/268 (21%)
Query: 25 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 84
LG + A G A + + AL+ P A LA ++ G +N AL+ K
Sbjct: 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTL 65
Query: 85 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMA 144
V P + Y+ L Y AL +G + A
Sbjct: 66 VARTPRYLGGYMVLSEAYVALYR----------------------QAEDRERGKGYLEQA 103
Query: 145 ILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 204
+ K A +PR+ + G +G D+A Q L+L+ P+ + L
Sbjct: 104 LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAE--- 159
Query: 205 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL 264
+Y G +A++ Y + L P D
Sbjct: 160 -------------------------------LYLSMGRLDEALAQYAKALEQAPKDLDLR 188
Query: 265 VNRGNTYKEIGRVTDAIQDYIRAITIRP 292
V + G+ +A +
Sbjct: 189 VRYASALLLKGKAEEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 3e-37
Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 1/123 (0%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 61
KG L +A + A +NP H G + G +A + +AL ++
Sbjct: 96 GKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED-TPEIR 154
Query: 62 SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 121
S LA L++ G L+ AL Y +A++ P D + + G +EA
Sbjct: 155 SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHH 214
Query: 122 RPN 124
+
Sbjct: 215 HHH 217
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 219 bits (558), Expect = 3e-63
Identities = 52/365 (14%), Positives = 106/365 (29%), Gaps = 73/365 (20%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM---KAQGLVQEAYSCYLEALRIQPTF 57
+ A C +AL P + S L Q A +A+R+ P
Sbjct: 149 CGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208
Query: 58 AIAWSNLA----GLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIM 113
LA + E + + +EA++ P D + Y+ P +AI
Sbjct: 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIE 268
Query: 114 CYQRAVQTRPN-AIAFGNLASTYYERGQADM-------------------AILYYKQAIG 153
++A++ PN A + Y + M A+ + K+A
Sbjct: 269 LLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE 328
Query: 154 CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP---QALTNLGNIYMEWNMLP 210
+ + L + + +EA + + S + + GN
Sbjct: 329 ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ------- 381
Query: 211 AAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNT 270
Q AI + E ++I+ + + +
Sbjct: 382 --------------------------LYQMKCEDKAIHHFIEGVKINQKSREKE-KMKDK 414
Query: 271 YKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 330
++I + ++ +EA LA + + ++ A + ++ L P
Sbjct: 415 LQKIAK---------MRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465
Query: 331 ATCNL 335
A+
Sbjct: 466 ASSWN 470
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 201 bits (512), Expect = 9e-57
Identities = 49/358 (13%), Positives = 98/358 (27%), Gaps = 44/358 (12%)
Query: 3 KGRLNEAAQCCRQALAL--NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI------- 53
+ L++ + L L +G + A C +A +
Sbjct: 28 ENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHAD 87
Query: 54 --QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAY-LNLGNVYKALGM--- 107
+ + W N A ++ G L+ Y + + F Y + + G
Sbjct: 88 QAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRL 147
Query: 108 ------PQEAIMCYQRAVQTRP-NAIAFGNLASTYY---ERGQADMAILYYKQAIGCDPR 157
+ A +C+++A++ +P N LA Y + AI +QAI +P
Sbjct: 148 KCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207
Query: 158 FLEAYNNLGNALKDV----GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAA 213
L L + E + + L P L + Y + A
Sbjct: 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAI 267
Query: 214 SYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE 273
K L + + Y+ + + K
Sbjct: 268 ELLKKALEYIPNNAYLHCQIGCCYRAKVFQ---------------VMNLRENGMYGKRKL 312
Query: 274 IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 331
+ + A+ +A + + LAS + + E A +++
Sbjct: 313 LELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 197 bits (503), Expect = 2e-55
Identities = 46/296 (15%), Positives = 85/296 (28%), Gaps = 38/296 (12%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGN----LMKAQGLVQEAYSCYLEALRIQPTF 57
A RQA+ LNP L + + E EAL P
Sbjct: 187 NWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246
Query: 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVY--------------- 102
+ A + + ++A++ K+A++ P + +G Y
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306
Query: 103 ----KALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPR 157
K L + A+ ++A + N LAS + Q + A Y+++ +
Sbjct: 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366
Query: 158 FLEA---YNNLGNALKD-VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAA 213
+ + GN + D+AI + + + + + M
Sbjct: 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK----------EKMKDKLQ 416
Query: 214 SYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGN 269
K L+ S + LA + + A L L G
Sbjct: 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 99.6 bits (248), Expect = 3e-22
Identities = 32/229 (13%), Positives = 68/229 (29%), Gaps = 44/229 (19%)
Query: 139 GQADMAILYYKQAIGCDPRFL------EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 192
+ + ++ ++ + F N L G+ + A++C + L
Sbjct: 25 MEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE 84
Query: 193 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 252
+ ++ + N A +Y G +D ++
Sbjct: 85 HADQAEIRSL-------------------------VTWGNYAWVYYHMGRLSDVQIYVDK 119
Query: 253 VLRIDP--------LAADGLVNRGNTYKEIG--RVTDAIQDYIRAITIRPTMAEAHANLA 302
V + + + G T + G + A + +A+ +P E + LA
Sbjct: 120 VKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLA 179
Query: 303 SAY---KDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDR 348
A + + AI +QA+ L PD L L + +
Sbjct: 180 IASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEE 228
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 199 bits (509), Expect = 1e-59
Identities = 27/184 (14%), Positives = 63/184 (34%), Gaps = 1/184 (0%)
Query: 17 LALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 76
+ + + + + G G +A + +L ++++G ++R
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60
Query: 77 ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTY 135
+ + ++ P LG Y + A+ + + P L
Sbjct: 61 GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120
Query: 136 YERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQA 195
G+ D AI +K A+G P + + + + + +GR +EA+ + + L
Sbjct: 121 DNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180
Query: 196 LTNL 199
L +
Sbjct: 181 LALV 184
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 6e-56
Identities = 38/208 (18%), Positives = 73/208 (35%), Gaps = 34/208 (16%)
Query: 124 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 183
+ + + ++ + G+ A++ +Q D ++ +LG A G VD +
Sbjct: 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLE 66
Query: 184 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 243
+ L+ P + + T LG Y Q Y
Sbjct: 67 RSLADAPDNVKVATVLGLTY----------------------------------VQVQKY 92
Query: 244 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 303
A+ +V +P+ + G +GR +AI + A+ +RP + H +A
Sbjct: 93 DLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAF 152
Query: 304 AYKDSGHVEAAIKSYKQALLLRPDFPEA 331
+Y+ G E A+ +K+A L
Sbjct: 153 SYEQMGRHEEALPHFKKANELDEGASVE 180
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 158 bits (403), Expect = 5e-45
Identities = 32/189 (16%), Positives = 52/189 (27%), Gaps = 34/189 (17%)
Query: 152 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 211
+G D Y + G + GR +A+ Q +LG Y
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAY-------- 52
Query: 212 AASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY 271
+ G L P G TY
Sbjct: 53 --------------------------VKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86
Query: 272 KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 331
++ + A+ I+ P L A + G + AI S+K AL LRP+ +
Sbjct: 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKV 146
Query: 332 TCNLLHTLQ 340
+ + +
Sbjct: 147 HRAIAFSYE 155
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-26
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Query: 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 62
+ + A + NP+ + LG + G EA + AL ++P
Sbjct: 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHR 148
Query: 63 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 103
+A + + G AL ++K+A +L A + L V +
Sbjct: 149 AIAFSYEQMGRHEEALPHFKKANELDE---GASVELALVPR 186
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 199 bits (507), Expect = 1e-56
Identities = 70/361 (19%), Positives = 126/361 (34%), Gaps = 66/361 (18%)
Query: 26 AHSNLGNLMKAQGLVQEAYSCYLEALRI------QPTFAIAWSNLAGLFMESGDLNRALQ 79
+ N+ +L G + + + + + + +GD +
Sbjct: 12 SAENVSSL--GLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69
Query: 80 YYKEAVKLK----PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-------AIAF 128
+++ A++ T Y LGN Y LG +A+ ++ + + A +
Sbjct: 70 FFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129
Query: 129 GNLASTYYERGQADMAILYYKQA------IGCDPRFLEAYNNLGNALKDVGR-------- 174
GNL +T G+ D A + ++ +G A NLGN G+
Sbjct: 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPG 189
Query: 175 ---------VDEAIQCYNQCLSL------QPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
+ A++ Y + L L + + +A NLGN Y AA +++
Sbjct: 190 KFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER 249
Query: 220 LAVT------TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI------DPLAADGLVNR 267
L + +NL + G + DA Y L + + A +
Sbjct: 250 LRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSL 309
Query: 268 GNTYKEIGRVTDAIQDYIRAITI------RPTMAEAHANLASAYKDSGHVEAAIKSYKQA 321
GNTY + AI+ + R + I R A A +L +A+ G E A+K +Q
Sbjct: 310 GNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369
Query: 322 L 322
L
Sbjct: 370 L 370
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 175 bits (447), Expect = 2e-48
Identities = 64/314 (20%), Positives = 107/314 (34%), Gaps = 58/314 (18%)
Query: 1 MRKGRLNEAAQCCRQALALN----PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI--- 53
G + A+ L +S LGN G +A + L +
Sbjct: 59 CNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS 118
Query: 54 ---QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD------AYLNLGNVYKA 104
+ A + NL G + A + + L D A NLGNVY A
Sbjct: 119 MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178
Query: 105 LG-----------------MPQEAIMCYQRAVQTRPN-------AIAFGNLASTYYERGQ 140
G A+ YQ ++ + A GNL +TYY G
Sbjct: 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD 238
Query: 141 ADMAILYYKQA------IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL------ 188
AI ++++ G A +NLGN+ +G+ ++A + Y + L+L
Sbjct: 239 FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE 298
Query: 189 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT------TGLSAPFNNLAVIYKQQGN 242
+ Q+ +LGN Y + A Y+ LA+ G + +L + G
Sbjct: 299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG 358
Query: 243 YADAISCYNEVLRI 256
+ A+ + L++
Sbjct: 359 HERALKYAEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 5e-38
Identities = 52/284 (18%), Positives = 87/284 (30%), Gaps = 52/284 (18%)
Query: 94 AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-------AIAFGNLASTYYERGQADMAIL 146
+ LG + Q + G +
Sbjct: 10 SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69
Query: 147 YYKQAI----GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS---HP---QAL 196
+++ AI Y+ LGNA +G ++A+Q + L+L S ++
Sbjct: 70 FFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129
Query: 197 TNLGNIYMEWNMLPAAASYYKATLAVT------TGLSAPFNNLAVIYKQQGNYAD----- 245
NLGN AA + L + NL +Y +G +
Sbjct: 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPG 189
Query: 246 ------------AISCYNEVLRID------PLAADGLVNRGNTYKEIGRVTDAIQDYIRA 287
A+ Y E L++ N GNTY +G AI+ +
Sbjct: 190 KFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER 249
Query: 288 ITI------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 325
+ I R A++NL +++ G E A + YK+ L L
Sbjct: 250 LRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 4e-25
Identities = 34/237 (14%), Positives = 62/237 (26%), Gaps = 65/237 (27%)
Query: 124 NAIAFGNLASTYYERGQADMAILYYKQA------IGCDPRFLEAYNNLGNALKDVGRVDE 177
++++ + G + G L + G
Sbjct: 7 SSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRA 66
Query: 178 AIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIY 237
+ + + + L +A Y + L Y
Sbjct: 67 GVAFFQAAIQAGTEDLRTL---------------SAIY---------------SQLGNAY 96
Query: 238 KQQGNYADAISCYNEVLRI------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI- 290
G+Y A+ + L + A N GNT K +GR +A R +T+
Sbjct: 97 FYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA 156
Query: 291 -----RPTMAEAHANLASAYKDSG-----------------HVEAAIKSYKQALLLR 325
R + A NL + Y G + A++ Y++ L L
Sbjct: 157 RQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 12/120 (10%), Positives = 29/120 (24%), Gaps = 30/120 (25%)
Query: 220 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 279
L + LSA N++ G+ + ++ +
Sbjct: 3 LGSMSSLSASAENVS--SLGLGSGGGGTNSHDGNSQQ----------------------- 37
Query: 280 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 339
+M A ++G A + ++ A+ + + L
Sbjct: 38 -----GSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQL 92
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 194 bits (494), Expect = 7e-55
Identities = 78/376 (20%), Positives = 129/376 (34%), Gaps = 75/376 (19%)
Query: 15 QALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ----PTFAIAWSNLAGLFME 70
L L G + G + S + A+++ T + +S L +
Sbjct: 8 SCLELA--------LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY 59
Query: 71 SGDLNRALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
D +AL+Y+ + L T D A NLGN K LG EAI+C QR +
Sbjct: 60 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 119
Query: 125 -------AIAFGNLASTYYERGQA--------------------DMAILYYKQA------ 151
A A NL + Y+ +G++ A+ +Y++
Sbjct: 120 LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTA 179
Query: 152 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYME 205
+G A+ NLGN +G +A+ + Q L + + + +A +NLGN Y+
Sbjct: 180 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 239
Query: 206 WNMLPAAASYYKATLAVT------TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID-- 257
A+ YYK TL + + +L Y +Y AI + + L I
Sbjct: 240 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299
Query: 258 ----PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI------RPTMAEAHANLASAYKD 307
+ GN Y +G A+ + + I + A NL+
Sbjct: 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMV 359
Query: 308 SGHVEAAIKSYKQALL 323
G + S
Sbjct: 360 LGLSYSTNNSIMSENT 375
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 1e-50
Identities = 64/333 (19%), Positives = 112/333 (33%), Gaps = 61/333 (18%)
Query: 54 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL----KPTFPDAYLNLGNVYKALGMPQ 109
+ + +SGD + +++ AV++ T Y LGN Y L
Sbjct: 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA 64
Query: 110 EAIMCYQRAVQTRPN-------AIAFGNLASTYYERGQADMAILYYKQA------IGCDP 156
+A+ + + A A GNL +T G D AI+ ++ +
Sbjct: 65 KALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV 124
Query: 157 RFLEAYNNLGNALKDVGRV--------------------DEAIQCYNQCLSL------QP 190
A NLGN G+ A+ Y + LSL +
Sbjct: 125 GEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRA 184
Query: 191 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVT------TGLSAPFNNLAVIYKQQGNYA 244
+ +A NLGN + A ++ L + ++NL Y G +
Sbjct: 185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244
Query: 245 DAISCYNEVLRID------PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI------RP 292
A Y + L + + A + GNTY + AI +++ + I R
Sbjct: 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRI 304
Query: 293 TMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 325
A +L +AY G+ + A+ ++ L +
Sbjct: 305 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 9e-37
Identities = 60/306 (19%), Positives = 103/306 (33%), Gaps = 67/306 (21%)
Query: 2 RKGRLNEAAQCCRQALALN------PLLVDAHSNLGNLMKAQG----------------- 38
G +EA CC++ L ++ A NLGN+ A+G
Sbjct: 99 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158
Query: 39 ---LVQEAYSCYLEALRI------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP 89
+Q A Y E L + + A+ NL G+ A+ +++ + +
Sbjct: 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218
Query: 90 TFPD------AYLNLGNVYKALGMPQEAIMCYQRA------VQTRPN-AIAFGNLASTYY 136
F D AY NLGN Y LG + A Y++ ++ R A + +L +TY
Sbjct: 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 278
Query: 137 ERGQADMAILYYKQA------IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL-- 188
+ AI Y+ + + A +LGNA +G D+A+ + L +
Sbjct: 279 LLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 338
Query: 189 ----QPSHPQALTNLGNIYMEW-NMLPAAASYYKATLAV---------TTGLSAPFNNLA 234
+ A NL ++ M S + G N+
Sbjct: 339 EVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGRRHSMENME 398
Query: 235 VIYKQQ 240
++
Sbjct: 399 LMKLTP 404
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 180 bits (460), Expect = 2e-52
Identities = 39/217 (17%), Positives = 74/217 (34%), Gaps = 5/217 (2%)
Query: 118 AVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDE 177
A + + LA Y A + A+ DP+ A+ + + D+
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDK 60
Query: 178 AIQCYNQCLSLQPSHPQALTNLGNI-YMEWNMLPAAASYYKATLAVTT--GLSAPFNNLA 234
A + + Q LS++P + N G N + +Y+ LA T N
Sbjct: 61 AQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKG 120
Query: 235 VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM 294
+ +QG + A + L P T G++ DA + + + +
Sbjct: 121 ICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL 180
Query: 295 AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 331
L +K + + A +Y+ L+ +FP +
Sbjct: 181 QADDLLL--GWKIAKALGNAQAAYEYEAQLQANFPYS 215
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 173 bits (440), Expect = 2e-49
Identities = 44/199 (22%), Positives = 70/199 (35%), Gaps = 6/199 (3%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
MR +A AL +P A + + + +A + +AL I+P A
Sbjct: 19 MRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEI 78
Query: 61 WSNLAG-LFMESGDLNRALQYYKEAVK--LKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 117
+N L ++ Y+ +A+ PT A LN G G A +R
Sbjct: 79 NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKR 138
Query: 118 AVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 176
++ +P AF LA T GQ A Y+K+ ++L K +
Sbjct: 139 SLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL--QADDLLLGWKIAKALG 196
Query: 177 EAIQCYNQCLSLQPSHPQA 195
A Y LQ + P +
Sbjct: 197 NAQAAYEYEAQLQANFPYS 215
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 1e-48
Identities = 35/180 (19%), Positives = 72/180 (40%), Gaps = 4/180 (2%)
Query: 25 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 84
+ + L ++A + +AL+ P +AW A ++ ++A + +++A
Sbjct: 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQA 68
Query: 85 VKLKPTFPDAYLNLGNVYKA-LGMPQEAIMCYQRAVQTRPN---AIAFGNLASTYYERGQ 140
+ +KP + N G L P E++ + +A+ IA N ++GQ
Sbjct: 69 LSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ 128
Query: 141 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 200
+A Y K+++ P+F A+ L G++ +A + + S LG
Sbjct: 129 FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLG 188
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 3e-18
Identities = 16/78 (20%), Positives = 26/78 (33%)
Query: 258 PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKS 317
++ Y A A+ P A A Y+ + A +S
Sbjct: 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64
Query: 318 YKQALLLRPDFPEATCNL 335
++QAL ++PD E N
Sbjct: 65 FRQALSIKPDSAEINNNY 82
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 1e-15
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 2/95 (2%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
++G+ A +++LA P A L G + +A + +
Sbjct: 124 AKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD 183
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAY 95
L + + L A Y+ +L+ FP +
Sbjct: 184 DLLLG--WKIAKALGNAQAAYEYEAQLQANFPYSE 216
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 8e-09
Identities = 10/50 (20%), Positives = 13/50 (26%)
Query: 291 RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
++ LA Y A S + AL P A Q
Sbjct: 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQ 53
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 187 bits (476), Expect = 8e-52
Identities = 47/320 (14%), Positives = 98/320 (30%), Gaps = 55/320 (17%)
Query: 36 AQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR-ALQYYKEAVKLKPTFPDA 94
Q +++ E L A A + D + A +AVKL+P +A
Sbjct: 80 VQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEA 139
Query: 95 YLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADM---------AI 145
+ LG VY G A C+ A+ N ++ NL+ + ++
Sbjct: 140 WNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSV 199
Query: 146 LYYKQAIGCDPRFLEAYNNLGNAL--------KDVGRVDEAIQCYNQCLSLQPSHPQALT 197
K A+ D ++ LGNA ++ +A+ Y Q +
Sbjct: 200 RQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS---- 255
Query: 198 NLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID 257
S N A ++K + +Y +A+ +++ +D
Sbjct: 256 ----------------SNPDL-----------HLNRATLHKYEESYGEALEGFSQAAALD 288
Query: 258 PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKS 317
P + + + R+T ++ + + ++ + + +
Sbjct: 289 PAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKK------LQSMLGSLRPAHLGPCGDGR 342
Query: 318 YKQALLLRPDFPEATCNLLH 337
Y+ A + + L
Sbjct: 343 YQSASGQKMTLELKPLSTLQ 362
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 184 bits (467), Expect = 1e-50
Identities = 63/419 (15%), Positives = 123/419 (29%), Gaps = 66/419 (15%)
Query: 70 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP-------QEAIMCYQRAVQTR 122
E + LQ + V F D+Y +V A ++ + + + +
Sbjct: 39 EEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSA 98
Query: 123 PN-AIAFGNLASTYYERGQADM-AILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 180
A A A + +A+ +P +EA+N LG G V A
Sbjct: 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHT 158
Query: 181 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 240
C++ L+ + +L NL + + +
Sbjct: 159 CFSGALTHCKNKV-SLQNLSMVLRQLQTDSG-------------------------DEHS 192
Query: 241 GNYADAISCYNEVLRIDPLAADGLVNRGNTY--------KEIGRVTDAIQDYIRAITIRP 292
+ D++ +++D L GN Y + A+ Y +A +
Sbjct: 193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252
Query: 293 TM---AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRD 349
+ H N A+ +K A++ + QA L P +PE L+ +
Sbjct: 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL 312
Query: 350 RMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPF 409
+ + + S+L S++P H P S + + S P
Sbjct: 313 ESKGK----TKPKKLQSMLGSLRPAH--LGPCGDGRYQSASGQKMTLELKPLSTLQ-PGV 365
Query: 410 NHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDG 468
N + +V + + P + + + V Y + + G
Sbjct: 366 NSGTVV---------LGKVVFSLTTEEKVPFTFGLVD----SDGPCYAVMVYNVVQSWG 411
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 1e-46
Identities = 48/253 (18%), Positives = 95/253 (37%), Gaps = 24/253 (9%)
Query: 8 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGL 67
EA +A+ L P LV+A + LG + +G V A++C+ AL ++ NL+ +
Sbjct: 121 EAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMV 179
Query: 68 FMESG---------DLNRALQYYKEAVKLKPTFPDAYLNLGNVY--------KALGMPQE 110
+ + +++ K AV++ ++ LGN Y + + Q+
Sbjct: 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239
Query: 111 AIMCYQRAVQTRP----NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLG 166
A+ Y +A + N N A+ + A+ + QA DP + E
Sbjct: 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQ 299
Query: 167 NALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT-- 224
L+ + R+ ++ + + ++ + +AS K TL +
Sbjct: 300 QLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPLS 359
Query: 225 GLSAPFNNLAVIY 237
L N+ V+
Sbjct: 360 TLQPGVNSGTVVL 372
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 6e-28
Identities = 35/242 (14%), Positives = 76/242 (31%), Gaps = 41/242 (16%)
Query: 133 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV------------------GR 174
+ + G+ M ++A + + L +D
Sbjct: 25 TGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYC-FRDSYFETHSVEDAGRKQQDVQEE 83
Query: 175 VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW-NMLPAAASYYKATLAVTTGLSAPFNNL 233
+++ +Q + L QAL G + P A + + L +N L
Sbjct: 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQL 143
Query: 234 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR---------VTDAIQDY 284
+Y ++G+ A +C++ L L N +++ V D+++
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTHCK-NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQA 202
Query: 285 IRAITIRPTMAEAHANLASAY--------KDSGHVEAAIKSYKQALLL---RPDFPEATC 333
A+ + + L +AY ++ + A+ +Y QA + P+
Sbjct: 203 KLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHL 262
Query: 334 NL 335
N
Sbjct: 263 NR 264
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 107 bits (267), Expect = 2e-24
Identities = 30/220 (13%), Positives = 68/220 (30%), Gaps = 18/220 (8%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGN--------LMKAQGLVQEAYSCYLEALRI 53
+ ++ + + A+ ++ L + LGN + + Q+A S Y +A ++
Sbjct: 191 HSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV 250
Query: 54 Q---PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQE 110
+ N A L AL+ + +A L P +P+ + + L
Sbjct: 251 DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS 310
Query: 111 AIMCYQRAVQTRPNAIA-------FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYN 163
+ + + ++ G Y+ L K P
Sbjct: 311 LLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPLSTLQPGVNSGTV 370
Query: 164 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 203
LG + + ++ + S P + + N+ +
Sbjct: 371 VLGKVVFSLTTEEKVPFTFGLVDSDGPCYAVMVYNVVQSW 410
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 1e-51
Identities = 71/352 (20%), Positives = 122/352 (34%), Gaps = 63/352 (17%)
Query: 15 QALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI----QPTFAIAWSNLAGLFME 70
L L G + G + S + A+++ T + +S L +
Sbjct: 4 SCLELA--------LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY 55
Query: 71 SGDLNRALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAIMCYQRA------ 118
D +AL+Y+ + L T D A NLGN K LG EAI+C QR
Sbjct: 56 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 115
Query: 119 VQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDE 177
+ + A A NL + Y+ +G++ +
Sbjct: 116 LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTG--------------EFPEDVRNALQA 161
Query: 178 AIQCYNQCLSL------QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT------TG 225
A+ Y + LSL + + +A NLGN + A ++ L +
Sbjct: 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA 221
Query: 226 LSAPFNNLAVIYKQQGNYADAISCYNEVLRID------PLAADGLVNRGNTYKEIGRVTD 279
++NL Y G + A Y + L + + A + GNTY +
Sbjct: 222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK 281
Query: 280 AIQDYIRAITI------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 325
AI +++ + I R A +L +AY G+ + A+ ++ L +
Sbjct: 282 AIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 5e-10
Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 12/103 (11%)
Query: 3 KGRLNEAAQCCRQALALN------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI--- 53
G A++ ++ L L + + +LGN ++A +L+ L I
Sbjct: 236 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295
Query: 54 ---QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD 93
+ A +L + G+ ++A+ + ++ +++ D
Sbjct: 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 338
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 1e-48
Identities = 59/134 (44%), Positives = 83/134 (61%), Gaps = 1/134 (0%)
Query: 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 117
A AW NL + + GD + A++YY++A++L P +A+ NLGN Y G EAI YQ+
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 118 AVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 176
A++ P A A+ NL + YY++G D AI YY++A+ DPR EA+ NLGNA G D
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 177 EAIQCYNQCLSLQP 190
EAI+ Y + L L P
Sbjct: 121 EAIEYYQKALELDP 134
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 9e-43
Identities = 55/168 (32%), Positives = 78/168 (46%), Gaps = 34/168 (20%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
EA+ NLGNA G DEAI+ Y + L L P +A
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA------------------------ 37
Query: 220 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 279
+ NL Y +QG+Y +AI Y + L +DP +A+ N GN Y + G +
Sbjct: 38 ----------WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 87
Query: 280 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 327
AI+ Y +A+ + P AEA NL +AY G + AI+ Y++AL L P
Sbjct: 88 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 3e-42
Identities = 61/167 (36%), Positives = 82/167 (49%), Gaps = 35/167 (20%)
Query: 93 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQA 151
+A+ NLGN Y G EAI YQ+A++ P A A+ NL + YY++G D AI YY++A
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 152 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 211
+ DPR EA+ NLGNA G DEAI+ Y + L L P +A NLGN
Sbjct: 62 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN---------- 111
Query: 212 AASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 258
Y +QG+Y +AI Y + L +DP
Sbjct: 112 ------------------------AYYKQGDYDEAIEYYQKALELDP 134
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 3e-40
Identities = 56/168 (33%), Positives = 81/168 (48%), Gaps = 34/168 (20%)
Query: 125 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 184
A A+ NL + YY++G D AI YY++A+ DPR EA+ NLGNA G DEAI+ Y +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 185 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 244
L L P +A + NL Y +QG+Y
Sbjct: 61 ALELDPRSAEA----------------------------------WYNLGNAYYKQGDYD 86
Query: 245 DAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 292
+AI Y + L +DP +A+ N GN Y + G +AI+ Y +A+ + P
Sbjct: 87 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 4e-39
Identities = 47/122 (38%), Positives = 70/122 (57%)
Query: 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 62
+G +EA + ++AL L+P +A NLGN QG EA Y +AL + P A AW
Sbjct: 14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY 73
Query: 63 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 122
NL + + GD + A++YY++A++L P +A+ NLGN Y G EAI YQ+A++
Sbjct: 74 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133
Query: 123 PN 124
P
Sbjct: 134 PR 135
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 5e-32
Identities = 42/111 (37%), Positives = 62/111 (55%)
Query: 230 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 289
+ NL Y +QG+Y +AI Y + L +DP +A+ N GN Y + G +AI+ Y +A+
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 290 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
+ P AEA NL +AY G + AI+ Y++AL L P EA NL +
Sbjct: 64 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 114
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 88.6 bits (221), Expect = 5e-21
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 261 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 320
A+ N GN Y + G +AI+ Y +A+ + P AEA NL +AY G + AI+ Y++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 321 ALLLRPDFPEATCNL 335
AL L P EA NL
Sbjct: 61 ALELDPRSAEAWYNL 75
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 1e-45
Identities = 31/199 (15%), Positives = 67/199 (33%), Gaps = 19/199 (9%)
Query: 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW----------------SNLAGL 67
VD + G +A S + + + + + + LA
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63
Query: 68 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAI 126
+ ++ + ++A +YKE ++ P D + G ++A+ Y++ +Q N
Sbjct: 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123
Query: 127 AFGNLASTYYERGQ-ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQC 185
A L + YY + + + + + A G + R ++A +
Sbjct: 124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183
Query: 186 LSLQPSHPQALTNLGNIYM 204
+ PS +A L I
Sbjct: 184 ILRFPS-TEAQKTLDKILR 201
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 9e-44
Identities = 36/224 (16%), Positives = 67/224 (29%), Gaps = 20/224 (8%)
Query: 56 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCY 115
+E+G +A+ Y+++ + L + Y + +
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSK------ 55
Query: 116 QRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV 175
LA Y + D A L+YK+ + P ++ G+
Sbjct: 56 -----------LATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQE 104
Query: 176 DEAIQCYNQCLSLQPSHPQALTNLGNIYMEW-NMLPAAASYYKATLAVTTGLSAPFNNLA 234
+A++ Y + L L+ + A LGN Y L+ T +
Sbjct: 105 KDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDG 164
Query: 235 VIYKQQGNYADAISCYNEVLRIDP--LAADGLVNRGNTYKEIGR 276
+ Y A + +V+ P A L KE+ R
Sbjct: 165 LSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKILRIEKEVNR 208
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 1e-41
Identities = 32/247 (12%), Positives = 67/247 (27%), Gaps = 53/247 (21%)
Query: 90 TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYK 149
D L + G +A+ +++ + + + Y+
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-----------------RTEMYYWT 44
Query: 150 QAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 209
+ L A K D+A Y + L P++ L + +
Sbjct: 45 NVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVC---- 100
Query: 210 PAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGN 269
+G DA+ Y ++L+++ + GN
Sbjct: 101 ------------------------------RGQEKDALRMYEKILQLEADNLAANIFLGN 130
Query: 270 TYKEIGRVTD-AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 328
Y ++ + ++ M A + + E A S ++ +L P
Sbjct: 131 YYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS- 189
Query: 329 PEATCNL 335
EA L
Sbjct: 190 TEAQKTL 196
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 161 bits (411), Expect = 2e-44
Identities = 67/336 (19%), Positives = 101/336 (30%), Gaps = 83/336 (24%)
Query: 41 QEAYSCYLEALRIQ------PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK-----P 89
S E L Q P NL + G A+ K+A++
Sbjct: 5 HHHSSGR-ENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH 63
Query: 90 TFPD---AYLNLGNVYKALGMPQEAIMCYQRAVQTR--------PN-AIAFGNLASTYYE 137
PD L VY+ ++A A+ R P A NLA Y +
Sbjct: 64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 123
Query: 138 RGQADMAILYYKQAI-------GCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 189
RG+ A K+A+ G D P + NNL ++ G+ +E Y + L +
Sbjct: 124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183
Query: 190 -----PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 244
P P NNLA Y +QG +
Sbjct: 184 QTKLGPDDPNVAKTK-------------------------------NNLASCYLKQGKFK 212
Query: 245 DAISCYNEVLRI---------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR---- 291
A + Y E+L D ++ + G+ D +
Sbjct: 213 QAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV 272
Query: 292 --PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 325
PT+ NL + Y+ G EAA + A+ R
Sbjct: 273 DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 2e-42
Identities = 53/284 (18%), Positives = 92/284 (32%), Gaps = 48/284 (16%)
Query: 21 PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ--------PTFAIAWSNLAGLFMESG 72
P + NL +QG + A +AL P A + LA ++ +
Sbjct: 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN 83
Query: 73 DLNRALQYYKEAVK-----LKPTFPD---AYLNLGNVYKALGMPQEAIMCYQRAVQTR-- 122
A +A+ L P NL +Y G +EA +RA++ R
Sbjct: 84 KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143
Query: 123 ------PN-AIAFGNLASTYYERGQADMAILYYKQAI-------GCD-PRFLEAYNNLGN 167
P+ A NLA +G+ + YY++A+ G D P + NNL +
Sbjct: 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLAS 203
Query: 168 ALKDVGRVDEAIQCYNQCLS------LQPSHP---QALTNLGNIYMEWNMLPAAASYYKA 218
G+ +A Y + L+ + S+ +
Sbjct: 204 CYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263
Query: 219 TLAVTT-GLSAP-----FNNLAVIYKQQGNYADAISCYNEVLRI 256
+ +P NL +Y++QG + A + +R
Sbjct: 264 GGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 4e-32
Identities = 42/228 (18%), Positives = 73/228 (32%), Gaps = 40/228 (17%)
Query: 2 RKGRLNEAAQCCRQALAL--------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 53
+ + +AA ALA+ +P + +NL L +G +EA AL I
Sbjct: 81 DQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 140
Query: 54 Q--------PTFAIAWSNLAGLFMESGDLNRALQYYKEAVK-----LKPTFPD---AYLN 97
+ P A +NLA L G YY+ A++ L P P+ N
Sbjct: 141 REKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNN 200
Query: 98 LGNVYKALGMPQEAIMCYQRAVQTR---------PN-AIAFGNLASTYYERGQADMAILY 147
L + Y G ++A Y+ + + + +G+ +
Sbjct: 201 LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260
Query: 148 YKQAI-----GCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 189
+ D P NLG + G+ + A + +
Sbjct: 261 GEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 5e-31
Identities = 54/223 (24%), Positives = 78/223 (34%), Gaps = 38/223 (17%)
Query: 135 YYERGQADMAILYYKQAIGCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ---- 189
++ + Y Q G + P L +NL GR + A+ Q L
Sbjct: 3 HHHHHSS-GRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS 61
Query: 190 -PSHP---QALTNLGNIYMEWNMLPAAASYYKATLAVT----------TGLSAPFNNLAV 235
HP L L +Y + N AA+ LA+ + NNLAV
Sbjct: 62 GHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAAT--LNNLAV 119
Query: 236 IYKQQGNYADAISCYNEVLRID--------PLAADGLVNRGNTYKEIGRVTDAIQDYIRA 287
+Y ++G Y +A L I P A L N + G+ + Y RA
Sbjct: 120 LYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179
Query: 288 ITIR--------PTMAEAHANLASAYKDSGHVEAAIKSYKQAL 322
+ I P +A+ NLAS Y G + A YK+ L
Sbjct: 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 7e-23
Identities = 35/184 (19%), Positives = 67/184 (36%), Gaps = 32/184 (17%)
Query: 1 MRKGRLNEAAQCCRQALAL--------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR 52
++G+ EA C++AL + +P + +NL L + QG +E Y AL
Sbjct: 122 GKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181
Query: 53 IQ--------PTFAIAWSNLAGLFMESGDLNRALQYYKEAVK------LKPTFPD---AY 95
I P A +NLA +++ G +A YKE + + +
Sbjct: 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241
Query: 96 LNLGNVYKALGMPQEAIMCYQRAVQTR------PN-AIAFGNLASTYYERGQADMAILYY 148
++ + G ++ + + P NL + Y +G+ + A
Sbjct: 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301
Query: 149 KQAI 152
+ A+
Sbjct: 302 EAAM 305
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 8e-42
Identities = 48/276 (17%), Positives = 90/276 (32%), Gaps = 48/276 (17%)
Query: 29 NLGNLMKAQGLVQEAYSCYLEALRIQ--------PTFAIAWSNLAGLFMESGDLNRALQY 80
+ + A +AL P A + LA ++ + A
Sbjct: 6 HHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHL 65
Query: 81 YKEAVKLK-----PTFPD---AYLNLGNVYKALGMPQEAIMCYQRAVQTR--------PN 124
+A+ ++ P NL +Y G +EA +RA++ R P+
Sbjct: 66 LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD 125
Query: 125 -AIAFGNLASTYYERGQADMAILYYKQAI-------GCD-PRFLEAYNNLGNALKDVGRV 175
A NLA +G+A+ YY++A+ G D P + NNL + G+
Sbjct: 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185
Query: 176 DEAIQCYNQCLS------LQPSHP---QALTNLGNIYMEWNMLPAAASYYKATLAVTT-G 225
+A Y + L+ + + + +A Y +
Sbjct: 186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245
Query: 226 LSAP-----FNNLAVIYKQQGNYADAISCYNEVLRI 256
+ +P +L +Y++QG A + + R
Sbjct: 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 2e-41
Identities = 58/308 (18%), Positives = 92/308 (29%), Gaps = 76/308 (24%)
Query: 63 NLAGLFMESGDLNRALQYYKEAVKLK-----PTFPD---AYLNLGNVYKALGMPQEAIMC 114
+ A+ K+A++ PD L VY+ +EA
Sbjct: 6 HHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHL 65
Query: 115 YQRAVQTR--------PN-AIAFGNLASTYYERGQADMAILYYKQAI-------GCD-PR 157
A+ R P A NLA Y +RG+ A K+A+ G P
Sbjct: 66 LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD 125
Query: 158 FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-----PSHPQALTNLGNIYMEWNMLPAA 212
+ NNL ++ G+ +E Y + L + P P
Sbjct: 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK------------- 172
Query: 213 ASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI---------DPLAADG 263
NNLA Y +QG Y DA + Y E+L +
Sbjct: 173 ------------------NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPI 214
Query: 264 LVNRGNTYKEIGRVTDAIQDYIRAITIR------PTMAEAHANLASAYKDSGHVEAAIKS 317
++ + + D+ + PT+ +L + Y+ G +EAA
Sbjct: 215 WMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTL 274
Query: 318 YKQALLLR 325
A R
Sbjct: 275 EDCASRNR 282
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 1e-31
Identities = 43/228 (18%), Positives = 75/228 (32%), Gaps = 40/228 (17%)
Query: 2 RKGRLNEAAQCCRQALAL--------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 53
+ + EAA ALA+ +P + +NL L +G +EA AL I
Sbjct: 55 DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 114
Query: 54 Q--------PTFAIAWSNLAGLFMESGDLNRALQYYKEAVK-----LKPTFPD---AYLN 97
+ P A +NLA L G YY+ A++ L P P+ N
Sbjct: 115 REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174
Query: 98 LGNVYKALGMPQEAIMCYQRAVQTR---------PN-AIAFGNLASTYYERGQADMAILY 147
L + Y G Q+A Y+ + + + + + + + Y
Sbjct: 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY 234
Query: 148 YKQAI-----GCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 189
+ D P +LG + G+++ A + +
Sbjct: 235 GEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 5e-27
Identities = 45/198 (22%), Positives = 68/198 (34%), Gaps = 36/198 (18%)
Query: 159 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-----PSHP---QALTNLGNIYMEWNMLP 210
+ + ++ + + A+ Q L HP L L +Y + N
Sbjct: 1 MGSSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 60
Query: 211 AAASYYKATLAVT----------TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID--- 257
AA LA+ + NNLAV+Y ++G Y +A L I
Sbjct: 61 EAAHLLNDALAIREKTLGKDHPAVAAT--LNNLAVLYGKRGKYKEAEPLCKRALEIREKV 118
Query: 258 -----PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR--------PTMAEAHANLASA 304
P A L N + G+ + Y RA+ I P +A+ NLAS
Sbjct: 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASC 178
Query: 305 YKDSGHVEAAIKSYKQAL 322
Y G + A YK+ L
Sbjct: 179 YLKQGKYQDAETLYKEIL 196
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 12/103 (11%), Positives = 31/103 (30%), Gaps = 15/103 (14%)
Query: 1 MRKGRLNEAAQCCRQALAL---------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 51
+++G+ +A ++ L N + +++ +++
Sbjct: 180 LKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS 239
Query: 52 RIQ------PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 88
+ PT +L L+ G L A A + +
Sbjct: 240 WYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 7e-40
Identities = 50/357 (14%), Positives = 100/357 (28%), Gaps = 45/357 (12%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+R+ + +A + + + +L + YLE +
Sbjct: 23 IRQFSVPDAEILKAEVEQDIQQMEE-DQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTV 81
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
L + L L+YY + G EAI Y+ A +
Sbjct: 82 TELLETIETPQKKLTGLLKYY------------SLFFRGMYEFDQKEYVEAIGYYREAEK 129
Query: 121 TRPN-------AIAFGNLASTYYERGQADMAILYYKQAI-------GCDPRFLEAYNNLG 166
P A +A YY Q +++ + QA+ R +++ +
Sbjct: 130 ELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189
Query: 167 NALKDVGRVDEAIQCYNQCLSLQPSHP------QALTNLGNIYMEWNMLPAAASYYKATL 220
D D+A+ L L +L N+ N Y A +++
Sbjct: 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA 249
Query: 221 AVTTGLSAPF-----NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLV-NRGNTYKEI 274
V+ L+ + G A E L + + +
Sbjct: 250 KVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAV 309
Query: 275 GRVTDAIQDYIRAITI------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 325
+ T + ++ + + A+ ++ S H E A Y++ L +
Sbjct: 310 YKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 89.9 bits (223), Expect = 3e-19
Identities = 34/274 (12%), Positives = 73/274 (26%), Gaps = 57/274 (20%)
Query: 69 MESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAF 128
+ + A E + + +L Y + + ++ Y
Sbjct: 23 IRQFSVPDAEILKAEVEQDIQQM-EEDQDLLIYYSLMCFRHQLMLDYL------------ 69
Query: 129 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYN--NLGNALKDVGRVDEAIQCYNQCL 186
TY R + + L+ Y+ G D EAI Y +
Sbjct: 70 -EPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAE 128
Query: 187 SLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADA 246
P + + A ++ +A Y +
Sbjct: 129 KELPFVS-------------DDIEKAEFHF---------------KVAEAYYHMKQTHVS 160
Query: 247 ISCYNEVLRI-------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI------RPT 293
+ + L I L Y + A+ A+ +
Sbjct: 161 MYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220
Query: 294 MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 327
+A + N+A++Y SG + A++ +++A + +
Sbjct: 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 4e-37
Identities = 52/360 (14%), Positives = 119/360 (33%), Gaps = 48/360 (13%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLG--NLMKAQGLVQEAYSCYLEALRIQPTFA 58
+R+ + +A R+ + + +LM+ + + Y LE +RI+
Sbjct: 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR 82
Query: 59 IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRA 118
++ L + + L L+YY G AI +++A
Sbjct: 83 LS-DLLLEIDKKQARLTGLLEYY------------FNFFRGMYELDQREYLSAIKFFKKA 129
Query: 119 VQTRPN-------AIAFGNLASTYYERGQADMAILYYKQAI-------GCDPRFLEAYNN 164
A F ++ +YY Q ++ Y +QA + R L+ ++
Sbjct: 130 ESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189
Query: 165 LGNALKDVGRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYMEWNMLPAAASYYKA 218
D+ + ++AI + + S+ + L N+G + A Y+K
Sbjct: 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249
Query: 219 TLAVT------TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI-----DPLAADGLVNR 267
+AV L + + I+ + G A +++ + D +
Sbjct: 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309
Query: 268 GNTYKEIG--RVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 325
+ Y D++ + + + + ++A Y + + + A + + +R
Sbjct: 310 KSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 3e-36
Identities = 50/157 (31%), Positives = 70/157 (44%), Gaps = 34/157 (21%)
Query: 18 ALNPL-LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 76
A++P +A NLGN QG EA Y +AL + P A AW NL + + GD +
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 77 ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYY 136
A++YY++A++L P +A+ NLGN Y G EAI
Sbjct: 62 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY---------------------- 99
Query: 137 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 173
Y++A+ DP EA NLGNA + G
Sbjct: 100 -----------YQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 5e-35
Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 34/154 (22%)
Query: 156 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASY 215
EA+ NLGNA G DEAI+ Y + L L P++ +A
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA-------------------- 45
Query: 216 YKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG 275
+ NL Y +QG+Y +AI Y + L +DP A+ N GN Y + G
Sbjct: 46 --------------WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG 91
Query: 276 RVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 309
+AI+ Y +A+ + P AEA NL +A + G
Sbjct: 92 DYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 2e-33
Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 34/152 (22%)
Query: 124 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 183
+A A+ NL + YY++G D AI YY++A+ DP EA+ NLGNA G DEAI+ Y
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 184 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 243
+ L L P++ +A + NL Y +QG+Y
Sbjct: 68 KALELDPNNAEA----------------------------------WYNLGNAYYKQGDY 93
Query: 244 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIG 275
+AI Y + L +DP A+ N GN ++ G
Sbjct: 94 DEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 1e-32
Identities = 43/111 (38%), Positives = 63/111 (56%)
Query: 230 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 289
+ NL Y +QG+Y +AI Y + L +DP A+ N GN Y + G +AI+ Y +A+
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 290 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
+ P AEA NL +AY G + AI+ Y++AL L P+ EA NL + Q
Sbjct: 72 LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 1e-32
Identities = 39/104 (37%), Positives = 59/104 (56%)
Query: 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 62
+G +EA + ++AL L+P +A NLGN QG EA Y +AL + P A AW
Sbjct: 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY 81
Query: 63 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 106
NL + + GD + A++YY++A++L P +A NLGN + G
Sbjct: 82 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 89.8 bits (224), Expect = 2e-21
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 242 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 301
N A+A + N GN Y + G +AI+ Y +A+ + P AEA NL
Sbjct: 7 NSAEA---WY--------------NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 49
Query: 302 ASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
+AY G + AI+ Y++AL L P+ EA NL +
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 2e-28
Identities = 40/295 (13%), Positives = 84/295 (28%), Gaps = 81/295 (27%)
Query: 69 MESGDLNRALQYYKEAVKL--------KPTFPDA---YLNLGNVYKALGMPQEAIMCYQR 117
+ + ++ A ++ +A K KP + A Y +K ++A Y +
Sbjct: 2 IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQ 61
Query: 118 AVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDE 177
+ N + + A +A+ G LKD+ R+ E
Sbjct: 62 EAEAHANNRSLFHAA---------------------------KAFEQAGMMLKDLQRMPE 94
Query: 178 AIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIY 237
A+Q + +Y+E AA + +
Sbjct: 95 AVQYIEKAS--------------VMYVENGTPDTAAMAL--------------DRAGKLM 126
Query: 238 KQQGNYADAISCYNEVLRI------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI- 290
+ + + A+ Y + + AA+ + + +A + ++
Sbjct: 127 -EPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY 185
Query: 291 -----RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA-TCNLLHTL 339
PT + AA K +++ + P F + C L L
Sbjct: 186 KEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI-PGFSGSEDCAALEDL 239
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 6e-24
Identities = 39/280 (13%), Positives = 69/280 (24%), Gaps = 79/280 (28%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLV-----------DAHSNLGNLMKAQGLVQEAYSCYLE 49
+ +++EA + +A ++ K +++A YL+
Sbjct: 2 IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQ 61
Query: 50 ALRIQPTF------AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 103
A A+ + + + A+QY ++A + Y
Sbjct: 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM--------------YV 107
Query: 104 ALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGC-----DPRF 158
G P A M + A E A+ Y+QA R
Sbjct: 108 ENGTPDTAAMAL--------------DRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQ 153
Query: 159 L-EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYK 217
E L + DEA + S +Y E P
Sbjct: 154 AAELIGKASRLLVRQQKFDEAAASLQKEKS--------------MYKEMENYPTCYKKC- 198
Query: 218 ATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID 257
++ + +Y A C E I
Sbjct: 199 -------------IAQVLVQLHRADYVAAQKCVRESYSIP 225
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 3e-28
Identities = 23/174 (13%), Positives = 49/174 (28%), Gaps = 22/174 (12%)
Query: 26 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAV 85
+ N G L + + A + +Q + N+ ++ ++ A + + ++
Sbjct: 8 SLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSI 64
Query: 86 KLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV-QTRPNAIAFGNLASTYYERGQADMA 144
AY G +Y AI + A+ Q R N
Sbjct: 65 NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ------------------L 106
Query: 145 ILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTN 198
I Y + E N+ +A + S++ + +
Sbjct: 107 IDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKID 160
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 7e-28
Identities = 28/181 (15%), Positives = 53/181 (29%), Gaps = 31/181 (17%)
Query: 148 YKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 207
+AI + N G D A+ ++ +Q H + N+G +Y
Sbjct: 3 LVEAI--------SLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILK 51
Query: 208 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLR-IDPLAADGLVN 266
+ A + ++ L+ + ++Y Q Y AI E L +
Sbjct: 52 NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI 111
Query: 267 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 326
G +K E N+A Y + A + A ++
Sbjct: 112 LGLQFKLFA-------------------CEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152
Query: 327 D 327
+
Sbjct: 153 E 153
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 7e-27
Identities = 30/203 (14%), Positives = 59/203 (29%), Gaps = 33/203 (16%)
Query: 124 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 183
AI+ N ++ A+ + N+G + + EA + +
Sbjct: 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFT 61
Query: 184 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 243
+ ++ A G +Y + A K L G N + YK G
Sbjct: 62 RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG------NQLIDYKILG-- 113
Query: 244 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 303
L+ A + L N Y + A + A +++ H+ +
Sbjct: 114 ----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE--PRHSKI-- 159
Query: 304 AYKDSGHVEAAIKSYKQALLLRP 326
+ A++ + L P
Sbjct: 160 --------DKAMECVWKQKLYEP 174
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 2e-22
Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 230 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 289
N V+ + ++ A+ ++ + + N G Y + +T+A + + R+I
Sbjct: 9 LWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN 65
Query: 290 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL-LLRPDFPEATCNL 335
+A A+ Y + + AIK K+AL LR + L
Sbjct: 66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKIL 112
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 9e-17
Identities = 20/159 (12%), Positives = 42/159 (26%), Gaps = 29/159 (18%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+ EA + +++ + L A+ G L A EAL
Sbjct: 48 TILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG---- 103
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
N+ + Y ++ K + N+ +Y ++A A
Sbjct: 104 --------------NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149
Query: 121 TRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL 159
+ + D A+ + +P +
Sbjct: 150 MKSE-----------PRHSKIDKAMECVWKQKLYEPVVI 177
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 107 bits (271), Expect = 6e-28
Identities = 17/140 (12%), Positives = 41/140 (29%), Gaps = 31/140 (22%)
Query: 53 IQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAI 112
+ + L ++G+ ++ +++A++L P +L G L +EA+
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 113 MCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV 172
CY + D + + +AL+ +
Sbjct: 61 DCYNYVINVIE-------------------------------DEYNKDVWAAKADALRYI 89
Query: 173 GRVDEAIQCYNQCLSLQPSH 192
+ + L+ H
Sbjct: 90 EGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 99.1 bits (248), Expect = 6e-25
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 2/100 (2%)
Query: 231 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 290
V+ GNY ++I + + +++DP + + +G + R +A+ Y I +
Sbjct: 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV 69
Query: 291 RP--TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 328
+ A A A + E + + L
Sbjct: 70 IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 99.1 bits (248), Expect = 6e-25
Identities = 19/140 (13%), Positives = 34/140 (24%), Gaps = 36/140 (25%)
Query: 155 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 214
+ E Y G D G E+I + + + L P + G
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN--------- 52
Query: 215 YYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI--DPLAADGLVNRGNTYK 272
Y +A+ CYN V+ + D D + + +
Sbjct: 53 -------------------------LERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87
Query: 273 EIGRVTDAIQDYIRAITIRP 292
I + +
Sbjct: 88 YIEGKEVEAEIAEARAKLEH 107
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 95.2 bits (238), Expect = 2e-23
Identities = 20/170 (11%), Positives = 40/170 (23%), Gaps = 65/170 (38%)
Query: 89 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYY 148
P+ Y G + G E+I +
Sbjct: 3 DQNPEEYYLEGVLQYDAGNYTESIDLF--------------------------------- 29
Query: 149 KQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNM 208
++AI DP + + G AL ++ R +EA+ CYN +++
Sbjct: 30 EKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED----------------- 72
Query: 209 LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 258
+ A + +++
Sbjct: 73 -EYNKDVW--------------AAKADALRYIEGKEVEAEIAEARAKLEH 107
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 3e-23
Identities = 10/108 (9%), Positives = 31/108 (28%), Gaps = 2/108 (1%)
Query: 19 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 78
+ + + G L G E+ + +A+++ P + W A+
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 79 QYYKEAVKLKP--TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
Y + + D + + + + + + + +
Sbjct: 61 DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 77.9 bits (193), Expect = 2e-17
Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 2/90 (2%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP--TFAIAW 61
G E+ +A+ L+P G + +EA CY + + W
Sbjct: 20 GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVW 79
Query: 62 SNLAGLFMESGDLNRALQYYKEAVKLKPTF 91
+ A + + KL+
Sbjct: 80 AAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 1e-15
Identities = 12/76 (15%), Positives = 26/76 (34%)
Query: 256 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 315
+ + G + G T++I + +AI + P ++ A + E A+
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 316 KSYKQALLLRPDFPEA 331
Y + + D
Sbjct: 61 DCYNYVINVIEDEYNK 76
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 50.1 bits (121), Expect = 8e-08
Identities = 5/57 (8%), Positives = 15/57 (26%), Gaps = 2/57 (3%)
Query: 4 GRLNEAAQCCRQALALNP--LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA 58
R EA C + + D + + ++ + +++
Sbjct: 54 ERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 3e-05
Identities = 7/46 (15%), Positives = 18/46 (39%)
Query: 290 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
+ E + D+G+ +I +++A+ L P+ +
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMK 46
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 8e-28
Identities = 35/204 (17%), Positives = 58/204 (28%), Gaps = 31/204 (15%)
Query: 132 ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL--- 188
A Y A + + A LG + R DEA +
Sbjct: 5 AHDYAL------AERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQK 58
Query: 189 ---QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV-------TTGLSAPFNNLAVIYK 238
+ +AL +G + AA + + SA +A +
Sbjct: 59 SGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL 118
Query: 239 QQGNYADAISCYNEVLRI-----DPLA-ADGLVNRGNTYKEIGRVTDAIQDYIRAITI-- 290
G+ A A Y + L D +A A G+ ++ + +A Q ++RA I
Sbjct: 119 HFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178
Query: 291 ----RPTMAEAHANLASAYKDSGH 310
+ E L H
Sbjct: 179 ELEDSEAVNELMTRLNGLEHHHHH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 9e-28
Identities = 29/199 (14%), Positives = 53/199 (26%), Gaps = 32/199 (16%)
Query: 77 ALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAIMCYQRAVQT------RPN 124
A Y + + A LG VY + EA +Q Q
Sbjct: 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA 64
Query: 125 -AIAFGNLASTYYERGQADMAILYYKQA------IGCDPRFL-EAYNNLGNALKDVGRVD 176
A + G D A + + + DP + G +
Sbjct: 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLA 124
Query: 177 EAIQCYNQCLSL------QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV------TT 224
A Q Y + L Q + A LG++ + L A ++ + +
Sbjct: 125 GARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSE 184
Query: 225 GLSAPFNNLAVIYKQQGNY 243
++ L + ++
Sbjct: 185 AVNELMTRLNGLEHHHHHH 203
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-26
Identities = 29/225 (12%), Positives = 62/225 (27%), Gaps = 52/225 (23%)
Query: 8 EAAQCCRQALALNPLLVD------AHSNLGNLMKAQGLVQEAYSCYLEALRI------QP 55
EA LL A LG + EA + + +
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63
Query: 56 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD-------AYLNLGNVYKALGMP 108
A + + +G+ + A + + E +L + P+ + V G
Sbjct: 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL 123
Query: 109 QEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNA 168
A Y++++ A + + A A+ LG+
Sbjct: 124 AGARQEYEKSLVY---AQQADD------QVAIAC------------------AFRGLGDL 156
Query: 169 LKDVGRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYMEWN 207
+ + EA Q + + + + + +T L + +
Sbjct: 157 AQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHH 201
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 1e-22
Identities = 26/165 (15%), Positives = 49/165 (29%), Gaps = 26/165 (15%)
Query: 2 RKGRLNEAAQCCRQALAL------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI-- 53
R +EA + + A +G + + G A C+LE +
Sbjct: 38 FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLA 97
Query: 54 -----QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD------AYLNLGNVY 102
+ +A + + GDL A Q Y++++ D A+ LG++
Sbjct: 98 SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA 157
Query: 103 KALGMPQEAIMCYQRAVQ-------TRPNAIAFGNLASTYYERGQ 140
+ EA + RA + L +
Sbjct: 158 QQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 7e-14
Identities = 20/125 (16%), Positives = 36/125 (28%), Gaps = 19/125 (15%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVD-------AHSNLGNLMKAQGLVQEAYSCYLEALRI 53
G + A +C + L L + + + G + A Y ++L
Sbjct: 77 RMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136
Query: 54 ------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD------AYLNLGNV 101
Q A A+ L L + +L A Q++ A + D L +
Sbjct: 137 AQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGL 196
Query: 102 YKALG 106
Sbjct: 197 EHHHH 201
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-27
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 87 LKPT-FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMA 144
+ P +A+ NLGN Y G EAI YQ+A++ PN A A+ NL + YY++G D A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 145 ILYYKQAIGCDPRFLEAYNNLGNALKDVG 173
I YY++A+ DP EA NLGNA + G
Sbjct: 63 IEYYQKALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 7e-27
Identities = 36/81 (44%), Positives = 50/81 (61%)
Query: 125 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 184
A A+ NL + YY++G D AI YY++A+ DP EA+ NLGNA G DEAI+ Y +
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 185 CLSLQPSHPQALTNLGNIYME 205
L L P++ +A NLGN +
Sbjct: 69 ALELDPNNAEAKQNLGNAKQK 89
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 4e-26
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 18 ALNPL-LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 76
A++P +A NLGN QG EA Y +AL + P A AW NL + + GD +
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 77 ALQYYKEAVKLKPTFPDAYLNLGNVYKALG 106
A++YY++A++L P +A NLGN + G
Sbjct: 62 AIEYYQKALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 94.0 bits (235), Expect = 2e-23
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 34/120 (28%)
Query: 156 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASY 215
EA+ NLGNA G DEAI+ Y + L L P++ +A
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA-------------------- 45
Query: 216 YKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG 275
+ NL Y +QG+Y +AI Y + L +DP A+ N GN ++ G
Sbjct: 46 --------------WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 91.3 bits (228), Expect = 2e-22
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 242 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 301
N A+A + N GN Y + G +AI+ Y +A+ + P AEA NL
Sbjct: 7 NSAEA---WY--------------NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 49
Query: 302 ASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
+AY G + AI+ Y++AL L P+ EA NL + Q
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 76.7 bits (190), Expect = 2e-17
Identities = 25/70 (35%), Positives = 35/70 (50%)
Query: 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 62
+G +EA + ++AL L+P +A NLGN QG EA Y +AL + P A A
Sbjct: 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 81
Query: 63 NLAGLFMESG 72
NL + G
Sbjct: 82 NLGNAKQKQG 91
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 6e-27
Identities = 33/258 (12%), Positives = 79/258 (30%), Gaps = 11/258 (4%)
Query: 16 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG-DL 74
+ + D + +++ + A+ +A+ + W L DL
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 75 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLAS 133
+ + Y ++ +P + + + + L P + + + N A+ +
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208
Query: 134 TYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR------VDEAIQCYNQCLS 187
E D + Y Q + D R +N + + ++ +Q + +
Sbjct: 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268
Query: 188 LQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNN-LAVIYKQ--QGNYA 244
L P + A L I + + + + S L IY+ +
Sbjct: 269 LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 328
Query: 245 DAISCYNEVLRIDPLAAD 262
+ N+ L + + A
Sbjct: 329 NKEDILNKALELCEILAK 346
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 4e-24
Identities = 44/230 (19%), Positives = 76/230 (33%), Gaps = 14/230 (6%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGN-LMKAQGLVQEAYSCYLEALRIQPTFAIA 60
R R A + R A+ LN L Q + E + + QP
Sbjct: 109 RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
W + L D ++ L++ + + A+ + V + + + + ++
Sbjct: 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK 228
Query: 121 TRP-NAIAFGNLAST------YYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 173
N + Y +R + + Y + I P A+N L L+D G
Sbjct: 229 EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG 288
Query: 174 RVDEAIQCYNQCLSLQPSHPQ--ALTNLGNIY---MEWNMLPAAASYYKA 218
+ + NQ L LQPSH + L +IY +E KA
Sbjct: 289 -LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKA 337
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 98.2 bits (244), Expect = 5e-22
Identities = 27/283 (9%), Positives = 78/283 (27%), Gaps = 35/283 (12%)
Query: 48 LEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM 107
+ + F + + RA + ++A++L + + K+L
Sbjct: 87 VVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK 146
Query: 108 P-QEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNL 165
E + ++ +P N + + + + + D + A+ +
Sbjct: 147 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 206
Query: 166 GNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG 225
+++ D +Q +Q L + +
Sbjct: 207 QWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT------------------ 248
Query: 226 LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYI 285
Y + + E++++ P ++ G ++
Sbjct: 249 ----------GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLN 297
Query: 286 RAITIRPTMAEAHAN--LASAYKDSGH--VEAAIKSYKQALLL 324
+ + ++P+ + + L Y+D + +AL L
Sbjct: 298 QLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALEL 340
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 92.4 bits (229), Expect = 4e-20
Identities = 22/188 (11%), Positives = 55/188 (29%), Gaps = 7/188 (3%)
Query: 151 AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNM-L 209
I +F + Y+ L+ R + A + + L ++ + L
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 210 PAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGN 269
+Y A + +++ V+ + + + + ++L D +R
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208
Query: 270 TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASA------YKDSGHVEAAIKSYKQALL 323
+E + +Q + + Y D +E ++ + +
Sbjct: 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268
Query: 324 LRPDFPEA 331
L P A
Sbjct: 269 LVPHNESA 276
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 4e-26
Identities = 33/177 (18%), Positives = 65/177 (36%), Gaps = 41/177 (23%)
Query: 93 DAYLNLGNVYKALGMPQEAIMCYQRAVQ-------TRPNAIAFGNLASTYYERGQADMAI 145
A+ NLGN + LG ++A++ +++ + IA+ NL + Y G+ + A
Sbjct: 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETAS 69
Query: 146 LYYKQA------IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 199
YYK+ + ++ +LGN + ++AI + + L++ Q L +
Sbjct: 70 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA----QELKDR 125
Query: 200 GNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 256
+ +L Y GN+ A+ + L I
Sbjct: 126 IGE---------GRAC---------------WSLGNAYTALGNHDQAMHFAEKHLEI 158
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-25
Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 40/177 (22%)
Query: 161 AYNNLGNALKDVGRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYMEWNMLPAAAS 214
A+ NLGN +G +A+ + Q L + + + A +NLGN Y+ A+
Sbjct: 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASE 70
Query: 215 YYKATLAVT------TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 268
YYK TL + + +L Y +Y AI + + L I
Sbjct: 71 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI------------ 118
Query: 269 NTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 325
+E+ R A +L +AY G+ + A+ ++ L +
Sbjct: 119 --AQELKD--------------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 4e-25
Identities = 35/150 (23%), Positives = 60/150 (40%), Gaps = 19/150 (12%)
Query: 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEA 111
A+ NL G+ A+ +++ + + F D AY NLGN Y LG + A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 112 IMCYQRAVQT------RPN-AIAFGNLASTYYERGQADMAILYYKQA------IGCDPRF 158
Y++ + R A + +L +TY + AI Y+ + +
Sbjct: 69 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 128
Query: 159 LEAYNNLGNALKDVGRVDEAIQCYNQCLSL 188
A +LGNA +G D+A+ + L +
Sbjct: 129 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 158
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 99.1 bits (248), Expect = 3e-24
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 19/147 (12%)
Query: 25 DAHSNLGNLMKAQGLVQEAYSCYLEALRI------QPTFAIAWSNLAGLFMESGDLNRAL 78
A NLGN G ++A + + L I + IA+SNL ++ G+ A
Sbjct: 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETAS 69
Query: 79 QYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAIMCYQRA------VQTRPN-A 125
+YYK+ + L D + +LGN Y L ++AI + + ++ R
Sbjct: 70 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 129
Query: 126 IAFGNLASTYYERGQADMAILYYKQAI 152
A +L + Y G D A+ + ++ +
Sbjct: 130 RACWSLGNAYTALGNHDQAMHFAEKHL 156
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 4e-19
Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 18/137 (13%)
Query: 2 RKGRLNEAAQCCRQALAL------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI-- 53
G +A Q L + A+SNLGN G + A Y + L +
Sbjct: 21 LLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR 80
Query: 54 ----QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD------AYLNLGNVYK 103
+ A + +L + D +A+ Y+ + + + D A +LGN Y
Sbjct: 81 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140
Query: 104 ALGMPQEAIMCYQRAVQ 120
ALG +A+ ++ ++
Sbjct: 141 ALGNHDQAMHFAEKHLE 157
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 7e-10
Identities = 15/99 (15%), Positives = 38/99 (38%), Gaps = 12/99 (12%)
Query: 2 RKGRLNEAAQCCRQALALN------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ- 54
G A++ ++ L L + + +LGN ++A +L+ L I
Sbjct: 61 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120
Query: 55 -----PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 88
A +L + G+ ++A+ + ++ +++
Sbjct: 121 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 8e-07
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 261 ADGLVNRGNTYKEIGRVTDAIQDYIRAITI------RPTMAEAHANLASAYKDSGHVEAA 314
N GNT+ +G DA+ + + + I + A++NL +AY G E A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 315 IKSYKQALLLR 325
+ YK+ LLL
Sbjct: 69 SEYYKKTLLLA 79
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 4e-26
Identities = 20/135 (14%), Positives = 40/135 (29%), Gaps = 4/135 (2%)
Query: 47 YLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 106
+ L ++G + A + ++ L +L LG ++LG
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 107 MPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAI---GCDPRFLEAY 162
+ ++A+ Y + A + + G D A + A P
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126
Query: 163 NNLGNALKDVGRVDE 177
G L+ V +
Sbjct: 127 ARAGAMLEAVTARKD 141
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-25
Identities = 20/120 (16%), Positives = 33/120 (27%)
Query: 14 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 73
L+ ++ LG G +A + + A + L G
Sbjct: 8 AMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL 67
Query: 74 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAS 133
+ALQ Y + P + + LG A + A A LA+
Sbjct: 68 YEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 4e-23
Identities = 18/111 (16%), Positives = 30/111 (27%)
Query: 148 YKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 207
G LE LG G+ D+A + + L + LG
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 208 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 258
+ A Y + + A + Q G+ A S + +
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 1e-22
Identities = 18/101 (17%), Positives = 32/101 (31%)
Query: 230 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 289
L Q G + DA + + +D A + G + +G A+Q Y
Sbjct: 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80
Query: 290 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 330
+ + A + G ++ A + A L P
Sbjct: 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 93.3 bits (232), Expect = 2e-22
Identities = 21/139 (15%), Positives = 48/139 (34%), Gaps = 5/139 (3%)
Query: 115 YQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 173
L Y+ G+ D A ++ D + LG + +G
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 174 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL 233
++A+Q Y+ + + P+ + +++ L A S + + A L+A
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARA----LAAAQPAH 122
Query: 234 AVIYKQQGNYADAISCYNE 252
+ + G +A++ +
Sbjct: 123 EALAARAGAMLEAVTARKD 141
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 6e-19
Identities = 18/105 (17%), Positives = 35/105 (33%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+ G+ ++A + + L+ LG ++ GL ++A Y +
Sbjct: 29 YQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRF 88
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 105
+ A ++ GDL+ A + A L P L
Sbjct: 89 PFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 3e-16
Identities = 14/86 (16%), Positives = 29/86 (33%)
Query: 250 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 309
+ + + L G + G+ DA + + + A L + + G
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 310 HVEAAIKSYKQALLLRPDFPEATCNL 335
E A++SY L+ + P +
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHA 92
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 6e-07
Identities = 11/82 (13%), Positives = 20/82 (24%), Gaps = 13/82 (15%)
Query: 266 NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 325
+ G T + E L +G + A K ++ +L
Sbjct: 2 SDGGTLAM-------------LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD 48
Query: 326 PDFPEATCNLLHTLQCVCSWED 347
L Q + +E
Sbjct: 49 HYDARYFLGLGACRQSLGLYEQ 70
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 1e-24
Identities = 15/114 (13%), Positives = 34/114 (29%), Gaps = 3/114 (2%)
Query: 74 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 132
+ + + + LG Y A+ + A+ P ++A+ L
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
Query: 133 STYYERGQADMAILYYKQAIGCDPRF--LEAYNNLGNALKDVGRVDEAIQCYNQ 184
T +G A ++ + + L L+ + R D ++
Sbjct: 61 KTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHHHH 114
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 1e-23
Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 3/111 (2%)
Query: 109 QEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN 167
Q + + N + L TY E Q D A+ + + A+ DP + A+ LG
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 168 ALKDVGRVDEAIQCYNQCLSLQPSH--PQALTNLGNIYMEWNMLPAAASYY 216
L+ G A Q + L+ S Q + L A ++
Sbjct: 62 TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHH 112
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 5e-21
Identities = 19/113 (16%), Positives = 31/113 (27%), Gaps = 2/113 (1%)
Query: 6 LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA 65
+ + LA + LG A AL PT+++AW L
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
Query: 66 GLFMESGDLNRALQYYKEAVKLKPTFPD--AYLNLGNVYKALGMPQEAIMCYQ 116
GD A Q ++ + + D L + L +
Sbjct: 61 KTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHHH 113
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 6e-19
Identities = 14/87 (16%), Positives = 25/87 (28%)
Query: 245 DAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASA 304
+L G TY E + A+ A+ PT + A L
Sbjct: 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62
Query: 305 YKDSGHVEAAIKSYKQALLLRPDFPEA 331
+ G A ++++ L +
Sbjct: 63 LQGQGDRAGARQAWESGLAAAQSRGDQ 89
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 1e-18
Identities = 15/110 (13%), Positives = 31/110 (28%), Gaps = 2/110 (1%)
Query: 144 AILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 203
+ + + LG + + D A+ L P++ A LG
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 204 MEWNMLPAAASYYKATLAV--TTGLSAPFNNLAVIYKQQGNYADAISCYN 251
A +++ LA + G L V ++ ++
Sbjct: 64 QGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHHH 113
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 2e-16
Identities = 16/148 (10%), Positives = 31/148 (20%), Gaps = 36/148 (24%)
Query: 175 VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLA 234
+ + L+ + LG Y E
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAE----------------------------- 31
Query: 235 VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM 294
+ A+ L DP + G T + G A Q + + +
Sbjct: 32 -----HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86
Query: 295 AEAHA--NLASAYKDSGHVEAAIKSYKQ 320
+ L + +A +
Sbjct: 87 GDQQVVKELQVFLRRLAREDALEHHHHH 114
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-12
Identities = 12/62 (19%), Positives = 19/62 (30%)
Query: 279 DAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHT 338
+ + L Y + +AA+ + AL P + A L T
Sbjct: 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62
Query: 339 LQ 340
LQ
Sbjct: 63 LQ 64
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-08
Identities = 12/55 (21%), Positives = 18/55 (32%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 55
+ + A R AL +P A LG ++ QG A + L
Sbjct: 30 AEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 2e-24
Identities = 52/339 (15%), Positives = 96/339 (28%), Gaps = 64/339 (18%)
Query: 22 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP-----TFAIAWSNLAGLFMESGDLNR 76
+ + ++ + G EA AL P + +A S L + G+L R
Sbjct: 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTR 71
Query: 77 ALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAIMCYQRAVQTRP------- 123
+L ++ ++ + + + A G Q A ++A Q
Sbjct: 72 SLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL 131
Query: 124 --NAIAFGNLASTYYERGQADMAILYYKQAI-----GCDPRFLEAYNNLGNALKDVGRVD 176
+ A + + D A + I + L+ L G +D
Sbjct: 132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLD 191
Query: 177 EAIQCYNQCLSL---QPSHPQALTNLGNIYME-WNML--PAAASYYKATLAVTTGLSAPF 230
A N+ +L H ++N + + W M AAA+ + A + F
Sbjct: 192 NARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 251
Query: 231 -----NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYI 285
N+A G + A E+ + + ++D
Sbjct: 252 LQGQWRNIARAQILLGEFEPAEIVLEELNEN--------------ARSLRLMSDLN---- 293
Query: 286 RAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL 324
L Y +G A + AL L
Sbjct: 294 ----------RNLLLLNQLYWQAGRKSDAQRVLLDALKL 322
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 87.3 bits (216), Expect = 2e-18
Identities = 37/290 (12%), Positives = 71/290 (24%), Gaps = 65/290 (22%)
Query: 1 MRKGRLNEAAQCCRQALALN------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ 54
KG L + +Q + + + ++ AQG +Q A+ +A ++
Sbjct: 64 HCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 123
Query: 55 --------PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDA-----YLNLGNV 101
P A L L+ A + +++ ++ L
Sbjct: 124 NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183
Query: 102 YKALGMPQEAIMCYQRAVQTRPN--------AIAFGNLASTYYERGQADMAILYYKQAI- 152
A G A R N + A + G A + +
Sbjct: 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 243
Query: 153 ---GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL---QPSHPQALTNLGNIYMEW 206
+ + N+ A +G + A + NL
Sbjct: 244 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL------- 296
Query: 207 NMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 256
L +Y Q G +DA + L++
Sbjct: 297 ------------------------LLLNQLYWQAGRKSDAQRVLLDALKL 322
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 4e-07
Identities = 19/170 (11%), Positives = 42/170 (24%), Gaps = 43/170 (25%)
Query: 173 GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNN 232
G DEA + L LP Y + +
Sbjct: 28 GNPDEAERLAKLALEE--------------------LPPGWFYSRIVAT---------SV 58
Query: 233 LAVIYKQQGNYADAISCYNEVLRI------DPLAADGLVNRGNTYKEIGRVTDAIQDYIR 286
L + +G +++ + ++ A L+ + G + A + +
Sbjct: 59 LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEK 118
Query: 287 AITIR--------PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 328
A + P A ++ A S + + + +
Sbjct: 119 AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 1e-05
Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 11/106 (10%)
Query: 233 LAVIYKQQGNYADAISCYNEVLRIDPLAAD-----GLVNRGNTYKEIGRVTDAIQDYIRA 287
A + GN +A L P G G +T ++ +
Sbjct: 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79
Query: 288 ITI------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 327
+ + + G ++ A ++ ++A L +
Sbjct: 80 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 125
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 3e-24
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 1/124 (0%)
Query: 83 EAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQA 141
+ + GN + + A+ Y +A++ P NA+ F N A+ Y + G
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 142 DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGN 201
A+ ++AI DP + +AY +G AL + + EA+ Y + L L P + +NL
Sbjct: 63 AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122
Query: 202 IYME 205
++
Sbjct: 123 AELK 126
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 4e-23
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 1/124 (0%)
Query: 19 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 78
+ + GN + A Y +A+ + P A+ + N A + + G+ A+
Sbjct: 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAV 66
Query: 79 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYE 137
Q + A+ + P + AY +G +L EA+ Y++A++ P N NL +
Sbjct: 67 QDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126
Query: 138 RGQA 141
+A
Sbjct: 127 LREA 130
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 4e-21
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 232 NLAVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 284
A K +GN + A+ Y + + ++P A NR Y ++G A+QD
Sbjct: 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDC 69
Query: 285 IRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
RAI I P ++A+ + A A+ YK+AL L PD NL
Sbjct: 70 ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 3e-20
Identities = 29/152 (19%), Positives = 47/152 (30%), Gaps = 34/152 (22%)
Query: 155 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 214
D E GN V + A+ Y + + L P++
Sbjct: 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVY------------------- 48
Query: 215 YYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 274
F N A Y + GNYA A+ + IDP + G +
Sbjct: 49 ---------------FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSL 93
Query: 275 GRVTDAIQDYIRAITIRPTMAEAHANLASAYK 306
+ +A+ Y +A+ + P +NL A
Sbjct: 94 NKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 7e-16
Identities = 21/152 (13%), Positives = 46/152 (30%), Gaps = 34/152 (22%)
Query: 124 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 183
A + + + A+ +Y +AI +P + N A +G A+Q
Sbjct: 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCE 70
Query: 184 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 243
+ + + P +Y KA + + + +
Sbjct: 71 RAICIDP-----------------------AYSKA-----------YGRMGLALSSLNKH 96
Query: 244 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIG 275
+A++ Y + L +DP N ++
Sbjct: 97 VEAVAYYKKALELDPDNETYKSNLKIAELKLR 128
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 2e-15
Identities = 23/106 (21%), Positives = 35/106 (33%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
M+ A +A+ LNP N G A A+ I P ++ A
Sbjct: 23 MKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKA 82
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 106
+ + A+ YYK+A++L P NL L
Sbjct: 83 YGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 7e-12
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 256 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 315
D A+ L GN ++ A+ Y +AI + P A N A+AY G+ A+
Sbjct: 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAV 66
Query: 316 KSYKQALLLRPDFPEA 331
+ ++A+ + P + +A
Sbjct: 67 QDCERAICIDPAYSKA 82
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 2e-23
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 1/106 (0%)
Query: 20 NPLL-VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 78
NP + + G M + EA + + +P AW +L E+ A+
Sbjct: 12 NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAI 71
Query: 79 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
A L P + L + A+ + + ++P
Sbjct: 72 IALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 94.8 bits (236), Expect = 2e-23
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
Query: 93 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 151
+ + G L EA + ++ Q P A+ +L T E + +AI+ A
Sbjct: 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHA 77
Query: 152 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ 194
DP+ + + L + + + A+ L QP + Q
Sbjct: 78 RMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 3e-23
Identities = 22/99 (22%), Positives = 41/99 (41%)
Query: 232 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR 291
+ + N A+A + V + +P + + G T E + AI A +
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 292 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 330
P HA LA ++ + + AA+ S + LL +P + +
Sbjct: 82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 91.4 bits (227), Expect = 5e-22
Identities = 19/133 (14%), Positives = 32/133 (24%), Gaps = 34/133 (25%)
Query: 130 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 189
+ + A L ++ +P EA+ +LG + + AI N L
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 190 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 249
P LAV + + N A++
Sbjct: 82 PKDIAVH----------------------------------AALAVSHTNEHNANAALAS 107
Query: 250 YNEVLRIDPLAAD 262
L P
Sbjct: 108 LRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 2e-21
Identities = 17/93 (18%), Positives = 28/93 (30%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
++ L EAA P +A +LG A A + P
Sbjct: 28 LKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV 87
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD 93
+ LA + N AL + + +P +
Sbjct: 88 HAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 8e-17
Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 34/136 (25%)
Query: 157 RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYY 216
+ E G ++ + + EA + +P +A +LG E
Sbjct: 15 MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE----------- 63
Query: 217 KATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR 276
AI N +DP ++
Sbjct: 64 -----------------------NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100
Query: 277 VTDAIQDYIRAITIRP 292
A+ + +P
Sbjct: 101 ANAALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 8e-14
Identities = 12/77 (15%), Positives = 26/77 (33%)
Query: 259 LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY 318
+ + + G + ++ + +A + P EA +L ++ AI +
Sbjct: 15 MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIAL 74
Query: 319 KQALLLRPDFPEATCNL 335
A +L P L
Sbjct: 75 NHARMLDPKDIAVHAAL 91
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 36/264 (13%), Positives = 65/264 (24%), Gaps = 13/264 (4%)
Query: 72 GDLNRALQYYKEAVKLKPTF-PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGN 130
G + + + P + + L Y A + + + + P A
Sbjct: 13 GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS--SAPELQAVRM 70
Query: 131 LASTYYERGQADMAILYYKQ--AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 188
A + D + + + D + D A++ +Q SL
Sbjct: 71 FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSL 130
Query: 189 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQG--NYADA 246
+ I ++ + L A K + A + G DA
Sbjct: 131 ECMA-----MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDA 185
Query: 247 ISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 306
+ E+ L + + GR A A+ E NL +
Sbjct: 186 YYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ 245
Query: 307 DSGHVEAAIKSYKQALL-LRPDFP 329
G Y L P
Sbjct: 246 HLGKPPEVTNRYLSQLKDAHRSHP 269
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 92.5 bits (229), Expect = 1e-20
Identities = 40/254 (15%), Positives = 75/254 (29%), Gaps = 15/254 (5%)
Query: 93 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQ 150
D ++ N + +G Q+ I QR + P L Y + + + + K
Sbjct: 1 DELFDVKNAF-YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP 59
Query: 151 AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL--SLQPSHPQALTNLGNIYMEWNM 208
+ L+A L R D + ++ + S+ ++ L +IY
Sbjct: 60 S---SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN 116
Query: 209 LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 268
AA ++ I + A ++ D A +
Sbjct: 117 PDAALRTLHQGDSLE-----CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATA 171
Query: 269 --NTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 326
+ ++ DA + A+ + G EAA ++AL
Sbjct: 172 WVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231
Query: 327 DFPEATCNLLHTLQ 340
PE NL+ Q
Sbjct: 232 GHPETLINLVVLSQ 245
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 82.1 bits (202), Expect = 3e-17
Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 3/127 (2%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLG--NLMKAQGLVQEAYSCYLEALRIQPTFA 58
++ RL+ A + ++ + +L +Q+AY + E
Sbjct: 141 LKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTL 200
Query: 59 IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCY-QR 117
+ + A M G A +EA+ P+ +NL + + LG P E Y +
Sbjct: 201 LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQ 260
Query: 118 AVQTRPN 124
+
Sbjct: 261 LKDAHRS 267
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 95.4 bits (237), Expect = 4e-23
Identities = 17/137 (12%), Positives = 35/137 (25%), Gaps = 3/137 (2%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G L ++ ++ +L G ++A+ + + + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ--- 120
L G + A+ Y + P + G EA A +
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120
Query: 121 TRPNAIAFGNLASTYYE 137
P S+ E
Sbjct: 121 NXPEFXELSTRVSSMLE 137
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 90.7 bits (225), Expect = 2e-21
Identities = 20/158 (12%), Positives = 34/158 (21%), Gaps = 11/158 (6%)
Query: 139 GQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTN 198
G LE +L G ++A + L +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 199 LGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 258
LG A Y + + A Q G A+A S +
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120
Query: 259 LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 296
+ + + AI ++ M
Sbjct: 121 NXPEFXELSTR-----------VSSMLEAIKLKKEMKH 147
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 87.3 bits (216), Expect = 2e-20
Identities = 21/123 (17%), Positives = 38/123 (30%)
Query: 209 LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 268
L + +++ +LA Q G Y DA + + +D + + G
Sbjct: 3 LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLG 62
Query: 269 NTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 328
+ +G+ AI Y + + A G + A A L +
Sbjct: 63 ACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122
Query: 329 PEA 331
PE
Sbjct: 123 PEF 125
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 84.2 bits (208), Expect = 3e-19
Identities = 23/182 (12%), Positives = 45/182 (24%), Gaps = 37/182 (20%)
Query: 72 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNL 131
G L ++ + +L G ++A +Q
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---------- 50
Query: 132 ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 191
D + LG + +G+ D AI Y+ +
Sbjct: 51 -----------------------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87
Query: 192 HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYN 251
P+ + ++ L A S L A + + + +AI
Sbjct: 88 EPRFPFHAAECLLQXGELAEAESGLFLAQE----LIANXPEFXELSTRVSSMLEAIKLKK 143
Query: 252 EV 253
E+
Sbjct: 144 EM 145
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 3e-17
Identities = 18/105 (17%), Positives = 30/105 (28%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+ G +A + L+ LG +A G A Y +
Sbjct: 32 YQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRF 91
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 105
+ A ++ G+L A A +L P+ V L
Sbjct: 92 PFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSML 136
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 2e-14
Identities = 14/112 (12%), Positives = 29/112 (25%)
Query: 241 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN 300
G + I + L + + G DA + + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 301 LASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMF 352
L + + G + AI SY ++ P + L + +
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGL 112
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 94.9 bits (236), Expect = 1e-22
Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 4/141 (2%)
Query: 68 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAI 126
F + LQ ++ ++ P + + LG Y +++ Y++A+Q R NA
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79
Query: 127 AFGNLASTYYERGQADM---AILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 183
+ LA+ Y + M +A+ D + A L + +AI+ +
Sbjct: 80 LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQ 139
Query: 184 QCLSLQPSHPQALTNLGNIYM 204
+ + L + +I M
Sbjct: 140 KVMDLNSPRINRTQLVESINM 160
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 8e-20
Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 8/146 (5%)
Query: 15 QALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDL 74
A D +Q + + +R P + W+ L ++ D
Sbjct: 5 AVRAEYQRQRDPLHQ----FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDY 60
Query: 75 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALG---MPQEAIMCYQRAVQTRP-NAIAFGN 130
+ +L Y++A++L+ + Y L V M + +A+ A
Sbjct: 61 SNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALML 120
Query: 131 LASTYYERGQADMAILYYKQAIGCDP 156
LAS + + AI +++ + +
Sbjct: 121 LASDAFMQANYAQAIELWQKVMDLNS 146
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 85.7 bits (212), Expect = 2e-19
Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 3/126 (2%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
Q + + NP + + LG Q + Y +AL+++ A ++
Sbjct: 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAA 83
Query: 64 LAGLFMESGD---LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
LA + + +A+ L A + L + +AI +Q+ +
Sbjct: 84 LATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143
Query: 121 TRPNAI 126
I
Sbjct: 144 LNSPRI 149
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 7e-18
Identities = 23/147 (15%), Positives = 47/147 (31%), Gaps = 6/147 (4%)
Query: 115 YQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR 174
+Q + + + + + + I +P+ E + LG
Sbjct: 3 WQAVRAEYQRQ---RDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND 59
Query: 175 VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN---MLPAAASYYKATLAVTTGLSAPFN 231
++ Y Q L L+ + + L + M + LA+ +
Sbjct: 60 YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119
Query: 232 NLAVIYKQQGNYADAISCYNEVLRIDP 258
LA Q NYA AI + +V+ ++
Sbjct: 120 LLASDAFMQANYAQAIELWQKVMDLNS 146
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 2e-17
Identities = 18/151 (11%), Positives = 46/151 (30%), Gaps = 3/151 (1%)
Query: 156 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASY 215
+ + + + +Q + P + + LG Y+ N +
Sbjct: 7 RAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLA 66
Query: 216 YKATLAVTTGLSAPFNNLAVIYKQQGNY---ADAISCYNEVLRIDPLAADGLVNRGNTYK 272
Y+ L + + + LA + Q + A + ++ L +D L+ +
Sbjct: 67 YRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAF 126
Query: 273 EIGRVTDAIQDYIRAITIRPTMAEAHANLAS 303
AI+ + + + + + S
Sbjct: 127 MQANYAQAIELWQKVMDLNSPRINRTQLVES 157
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 2e-13
Identities = 15/114 (13%), Positives = 44/114 (38%), Gaps = 3/114 (2%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG---LVQEAYSCYLEALRIQPTF 57
+ + + + RQAL L + ++ L ++ Q + + + +AL +
Sbjct: 55 LWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE 114
Query: 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEA 111
A LA + +A++ +++ + L + + ++ A + + +
Sbjct: 115 ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRS 168
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 1e-12
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 3/102 (2%)
Query: 237 YKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 296
+ Q N + + +R +P ++ G Y ++++ Y +A+ +R AE
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79
Query: 297 AHANLASAY---KDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
+A LA+ +AL L + A L
Sbjct: 80 LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLL 121
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 5e-06
Identities = 16/76 (21%), Positives = 26/76 (34%)
Query: 264 LVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 323
+ + + +Q I P +E A L Y ++ +Y+QAL
Sbjct: 13 QRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ 72
Query: 324 LRPDFPEATCNLLHTL 339
LR + E L L
Sbjct: 73 LRGENAELYAALATVL 88
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 3e-22
Identities = 19/124 (15%), Positives = 39/124 (31%), Gaps = 1/124 (0%)
Query: 14 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 73
+ A+ ++D + +G ++EA + LA ++
Sbjct: 26 KDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ 85
Query: 74 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAS 133
+A Y A L + G L P +A C++ +Q + A
Sbjct: 86 FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE-KLKIKAQ 144
Query: 134 TYYE 137
+Y +
Sbjct: 145 SYLD 148
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 1e-21
Identities = 16/114 (14%), Positives = 32/114 (28%), Gaps = 1/114 (0%)
Query: 81 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERG 139
K+ + D + + G +EA + ++ N LA+ Y +
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84
Query: 140 QADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP 193
Q A Y A + G + +A +C+ +
Sbjct: 85 QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 2e-20
Identities = 14/111 (12%), Positives = 28/111 (25%), Gaps = 1/111 (0%)
Query: 47 YLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 106
+ I + A F G + A +++ D + L +Y+
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84
Query: 107 MPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDP 156
Q+A Y A + + A ++ I
Sbjct: 85 QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 2e-19
Identities = 16/111 (14%), Positives = 31/111 (27%)
Query: 148 YKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 207
K ++ + + GR++EA + + + L IY
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84
Query: 208 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 258
AA Y A+ P + + A C+ V++
Sbjct: 85 QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 1e-18
Identities = 15/132 (11%), Positives = 37/132 (28%)
Query: 196 LTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLR 255
+T +I + + K A+ + + A + +G +A + +
Sbjct: 5 ITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI 64
Query: 256 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 315
D D ++ Y+ + A Y A + + A
Sbjct: 65 YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAK 124
Query: 316 KSYKQALLLRPD 327
+ ++ + D
Sbjct: 125 ECFELVIQHSND 136
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 1e-17
Identities = 15/132 (11%), Positives = 42/132 (31%), Gaps = 4/132 (3%)
Query: 94 AYLNLGNVYKALGMPQEAIM---CYQRAVQTRPNAI-AFGNLASTYYERGQADMAILYYK 149
LN+ +AI + + + + A +Y +G+ + A ++++
Sbjct: 1 GSLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFR 60
Query: 150 QAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 209
D ++ L + + +A Y +L + + + G +
Sbjct: 61 FLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAP 120
Query: 210 PAAASYYKATLA 221
A ++ +
Sbjct: 121 LKAKECFELVIQ 132
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 7e-16
Identities = 14/89 (15%), Positives = 29/89 (32%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
KGR+ EA R + VD L + + + Q+A Y A +
Sbjct: 47 YNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKP 89
+ + +A + ++ ++
Sbjct: 107 VFHTGQCQLRLKAPLKAKECFELVIQHSN 135
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 1e-13
Identities = 13/105 (12%), Positives = 31/105 (29%)
Query: 231 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 290
I + ++ + ++ I D + + + GR+ +A +
Sbjct: 6 TENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY 65
Query: 291 RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
+ LA+ Y+ + A Y A L + +
Sbjct: 66 DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 7/75 (9%)
Query: 273 EIGRVTDAIQDYIR-------AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 325
E ++ A+ D I I M + + A + + G +E A ++ +
Sbjct: 7 ENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD 66
Query: 326 PDFPEATCNLLHTLQ 340
+ L Q
Sbjct: 67 FYNVDYIMGLAAIYQ 81
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 3e-21
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 124 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 183
+ LA + + A A+ +++ + DP ++ Y +LG + + R D+AI Y
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65
Query: 184 QCLSLQPSHP--QALTNLGNIYME 205
Q + + + L+ L + ++
Sbjct: 66 QGIEVAREEGTQKDLSELQDAKLK 89
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 7e-20
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 3/97 (3%)
Query: 89 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILY 147
P P L + A+ ++ V+T P+ + +L Y + D AI
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63
Query: 148 YKQAIGCDPRFLEAY--NNLGNALKDVGRVDEAIQCY 182
Y Q I + L +A ++ +
Sbjct: 64 YAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHHH 100
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 1e-19
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Query: 54 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIM 113
P LA ++ + +RAL ++E V+ P + Y +LG +Y+ L +AI
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 114 CYQRAVQTRP---NAIAFGNLASTYYERGQADMAILYY 148
Y + ++ L + + ++
Sbjct: 63 TYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHHH 100
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 3e-18
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 231 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 290
LA + + N + A++ + E++ DP + G Y+ + R DAI Y + I +
Sbjct: 11 YALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70
Query: 291 RPTMAEAHA--NLASAYKDSGHVEAAIKSY 318
L A + +E +
Sbjct: 71 AREEGTQKDLSELQDAKLKAEGLEHHHHHH 100
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 9e-18
Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 2/89 (2%)
Query: 20 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ 79
+P L A + + E + P + + +L L+ + A+
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 80 YYKEAVKLKPTFPDAY--LNLGNVYKALG 106
Y + +++ L +
Sbjct: 63 TYAQGIEVAREEGTQKDLSELQDAKLKAE 91
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 1e-16
Identities = 10/75 (13%), Positives = 24/75 (32%)
Query: 257 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 316
DP + + + A+ + + P + +L Y+ + AI
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 317 SYKQALLLRPDFPEA 331
+Y Q + + +
Sbjct: 63 TYAQGIEVAREEGTQ 77
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 5e-16
Identities = 13/91 (14%), Positives = 24/91 (26%), Gaps = 2/91 (2%)
Query: 155 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 214
DP L A+ + + + P + +LG +Y + A
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 215 YYKATLAV--TTGLSAPFNNLAVIYKQQGNY 243
Y + V G + L +
Sbjct: 63 TYAQGIEVAREEGTQKDLSELQDAKLKAEGL 93
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 3e-12
Identities = 11/83 (13%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF--A 58
++ + A + + +P V + +LG L + +A Y + + +
Sbjct: 18 LKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77
Query: 59 IAWSNLAGLFMESGDLNRALQYY 81
S L +++ L ++
Sbjct: 78 KDLSELQDAKLKAEGLEHHHHHH 100
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 9e-08
Identities = 7/49 (14%), Positives = 17/49 (34%)
Query: 292 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
P LA + + A+ +++ + PD+ +L +
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYE 52
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 4e-21
Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 27/149 (18%)
Query: 54 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIM 113
AIA +L + D +A +Y +A++L P+ Y N VY E +
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63
Query: 114 CYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 173
++AV+ A +A + GNA +
Sbjct: 64 FCEKAVEVGRETRA--------------------------DYKLIAKAMSRAGNAFQKQN 97
Query: 174 RVDEAIQCYNQCLSLQPSHPQALTNLGNI 202
+ A+Q +++ LS P+ + + +
Sbjct: 98 DLSLAVQWFHRSLSEFRD-PELVKKVKEL 125
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 8e-21
Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Query: 20 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ 79
A +LGN Q ++A+ Y +A+ + P+ ++N A ++ E +Q
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63
Query: 80 YYKEAVKLKP-------TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNA 125
+ ++AV++ A GN ++ A+ + R++ +
Sbjct: 64 FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 2e-20
Identities = 17/105 (16%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 230 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 289
+L +Q ++ A Y++ + +DP N+ Y E + + +Q +A+
Sbjct: 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70
Query: 290 IRP-------TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 327
+ +A+A + +A++ + A++ + ++L D
Sbjct: 71 VGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 2e-18
Identities = 21/135 (15%), Positives = 45/135 (33%), Gaps = 27/135 (20%)
Query: 124 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 183
AIA +L + Y++ + A ++Y +AI DP + YNN + + E +Q
Sbjct: 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCE 66
Query: 184 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 243
+ + + KA + +++Q +
Sbjct: 67 KAVEVGR----------------ETRADYKLIAKA-----------MSRAGNAFQKQNDL 99
Query: 244 ADAISCYNEVLRIDP 258
+ A+ ++ L
Sbjct: 100 SLAVQWFHRSLSEFR 114
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-12
Identities = 13/75 (17%), Positives = 28/75 (37%)
Query: 257 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 316
AA + GN + A Y +AI + P+ + N A+ Y + ++
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63
Query: 317 SYKQALLLRPDFPEA 331
++A+ + +
Sbjct: 64 FCEKAVEVGRETRAD 78
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 4e-06
Identities = 13/110 (11%), Positives = 36/110 (32%), Gaps = 8/110 (7%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
++ +A +A+ L+P + ++N + + E +A+ +
Sbjct: 19 YKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD 78
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVK-------LKPTFPDAYLNLGNVYK 103
+ +A +G+ + AV+ P+ + + K
Sbjct: 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKELEK 127
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 7e-21
Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 105 LGMPQEAIMCYQRAVQ---TRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE 160
LG+ +A+ Y++A+ + A + L ST+ G+ A + P
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 161 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP 193
L ++GR ++ ++ + ++
Sbjct: 63 LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDE 95
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 1e-18
Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 13/119 (10%)
Query: 37 QGLVQEAYSCYLEALRI---QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD 93
GL +A Y +A+ A + L F G+ +A VK P
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 94 AYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI 152
+ V LG ++ + + + + Y++ AIL+Y +
Sbjct: 63 LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ-----SYKQ-----AILFYADKL 111
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 1e-17
Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 3/94 (3%)
Query: 240 QGNYADAISCYNEVLRI---DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 296
G A A+ Y + + A+ + G+T++ +G A + P
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 297 AHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 330
A + G E ++ + + D
Sbjct: 63 LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 2e-17
Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 14/119 (11%)
Query: 139 GQADMAILYYKQAI---GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQA 195
G A+ YY++AI E Y LG+ + +G +A + P+H
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 196 LTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVL 254
+ +A T+ + +Y AI Y + L
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSD-----------DETIQSYKQAILFYADKL 111
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 1e-14
Identities = 18/150 (12%), Positives = 37/150 (24%), Gaps = 42/150 (28%)
Query: 173 GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNN 232
G +A+ Y + ++ + +
Sbjct: 4 GLEAQAVPYYEKAIASGLQGK--------------------DLAEC-----------YLG 32
Query: 233 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 292
L ++ G Y A + ++ P V +GR ++ ++ I
Sbjct: 33 LGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92
Query: 293 TMAEAHANLASAYKDSGHVEAAIKSYKQAL 322
+ S Y + AI Y L
Sbjct: 93 ----DDETIQS-Y------KQAILFYADKL 111
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 9e-11
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Query: 275 GRVTDAIQDYIRAITI---RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 331
G A+ Y +AI +AE + L S ++ G A + P+
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 332 TCNL 335
Sbjct: 64 RVFY 67
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-07
Identities = 7/83 (8%), Positives = 19/83 (22%), Gaps = 11/83 (13%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 61
G +A + P ++ G ++ L+ +
Sbjct: 39 TLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDE--- 95
Query: 62 SNLAGLFMESGDLNRALQYYKEA 84
+A+ +Y +
Sbjct: 96 --------TIQSYKQAILFYADK 110
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 90.2 bits (223), Expect = 2e-19
Identities = 28/173 (16%), Positives = 46/173 (26%), Gaps = 24/173 (13%)
Query: 42 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 101
+ + +A + LNRA + E V+ P F A V
Sbjct: 195 ALLTNFYQAHDYLLHG------------DDKSLNRASELLGEIVQSSPEFTYARAEKALV 242
Query: 102 YKALGMPQ--------EAIMCYQRAVQTRPN---AIAFGNLASTYYERGQADMAILYYKQ 150
V +I + A + +G+ D +
Sbjct: 243 DIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINT 302
Query: 151 AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 203
I + +L Y LG + G EA Y +L+P I+
Sbjct: 303 GIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIF 354
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 80.1 bits (197), Expect = 4e-16
Identities = 20/136 (14%), Positives = 32/136 (23%), Gaps = 10/136 (7%)
Query: 41 QEAYSCYLEALRIQPTFAIAWSNLAGLF--------MESGDLNRALQYYKEAVKLK--PT 90
A E ++ P F A + A + ++ L V L
Sbjct: 216 NRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN 275
Query: 91 FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQ 150
Y G E+ + + + + L Y +G A Y
Sbjct: 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLT 335
Query: 151 AIGCDPRFLEAYNNLG 166
A P Y
Sbjct: 336 AFNLRPGANTLYWIEN 351
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 79.8 bits (196), Expect = 5e-16
Identities = 26/208 (12%), Positives = 58/208 (27%), Gaps = 18/208 (8%)
Query: 130 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALK-----DVGRVDEAIQCYNQ 184
+L + + + P N A D ++ A + +
Sbjct: 165 DLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGE 224
Query: 185 CLSLQPSHPQALTNLGNIYMEWNM--------LPAAASYYKATLAVTTGLSAPF--NNLA 234
+ P A + + + L A + + + + A
Sbjct: 225 IVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKA 284
Query: 235 VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM 294
V +G ++ N + ++ + V G Y+ G +A Y+ A +RP
Sbjct: 285 VSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343
Query: 295 AEAHANLASAYKDSGHVEAAIKSYKQAL 322
+ ++ S V + + L
Sbjct: 344 NTLYWIENGIFQTS--VPYVVPYLDKFL 369
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 76.3 bits (187), Expect = 6e-15
Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 11/131 (8%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE----------ALRI 53
LN A++ + + +P A + + + L L
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272
Query: 54 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIM 113
+I + A + G + + Q + L+ ++ Y+ LG VY+ GM +EA
Sbjct: 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW-LNYVLLGKVYEMKGMNREAAD 331
Query: 114 CYQRAVQTRPN 124
Y A RP
Sbjct: 332 AYLTAFNLRPG 342
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 66.3 bits (161), Expect = 1e-11
Identities = 14/102 (13%), Positives = 32/102 (31%), Gaps = 3/102 (2%)
Query: 3 KGRLNEAAQCCRQALALNPLLVDA--HSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+ +L + L L + + +G E+Y + ++ ++
Sbjct: 254 EKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-N 312
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVY 102
+ L ++ G A Y A L+P Y ++
Sbjct: 313 YVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIF 354
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 7e-08
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+ KG+ +E+ Q + L + LG + + +G+ +EA YL A ++P
Sbjct: 288 LVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLK 88
+ G+F + + Y + + +
Sbjct: 347 YWIENGIFQT--SVPYVVPYLDKFLASE 372
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 2e-19
Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 17/129 (13%)
Query: 82 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 140
K+A+K K LGN A+ Y +A + P N N A+ Y+E+G
Sbjct: 2 KQALKEK--------ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD 53
Query: 141 ADMAILYYKQAIGCDPRFLE-------AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP 193
+ ++AI E AY +GN+ + +AI YN+ L+ + P
Sbjct: 54 YNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-P 112
Query: 194 QALTNLGNI 202
L
Sbjct: 113 DVLKKCQQA 121
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 1e-17
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 7/114 (6%)
Query: 25 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 84
LGN + A Y +A + PT +N A ++ E GD N+ + ++A
Sbjct: 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64
Query: 85 VKLKPTFPD-------AYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNL 131
+++ + AY +GN Y ++AI Y +++
Sbjct: 65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC 118
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 6e-17
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 234 AVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 286
A+ K+ GN + A+ Y++ +DP + N+ Y E G + +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 287 AITIRP-------TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 327
AI + +A+A+A + ++Y + AI Y ++L
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 5e-16
Identities = 25/154 (16%), Positives = 45/154 (29%), Gaps = 42/154 (27%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
LGN D A++ Y++ L P++ +TN +Y E
Sbjct: 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-------------- 50
Query: 220 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP-------LAADGLVNRGNTYK 272
+G+Y + + + A GN+Y
Sbjct: 51 --------------------KGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90
Query: 273 EIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 306
+ + DAI Y +++ T + A K
Sbjct: 91 KEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEK 123
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 3e-14
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 27/135 (20%)
Query: 124 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 183
A+ L + Y++ D A+ +Y +A DP + N + G ++ +
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 184 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 243
+ + + + + KA + + Y ++ Y
Sbjct: 63 KAIEVGRENREDYRQ----------------IAKA-----------YARIGNSYFKEEKY 95
Query: 244 ADAISCYNEVLRIDP 258
DAI YN+ L
Sbjct: 96 KDAIHFYNKSLAEHR 110
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 5e-09
Identities = 14/71 (19%), Positives = 27/71 (38%)
Query: 261 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 320
A GN + A++ Y +A + PT N A+ Y + G + ++
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 321 ALLLRPDFPEA 331
A+ + + E
Sbjct: 64 AIEVGRENRED 74
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 8/112 (7%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+K + A + +A L+P + +N + +G + +A+ +
Sbjct: 15 YKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED 74
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVK-------LKPTFPDAYLNLGNVYKAL 105
+ +A + G+ + YK+A+ T PD K L
Sbjct: 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKIL 125
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 4e-19
Identities = 29/110 (26%), Positives = 50/110 (45%)
Query: 15 QALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDL 74
+NP L N GN +G +A Y EA++ P A +SN A + + +
Sbjct: 7 HHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF 66
Query: 75 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
AL+ +E ++L+PTF Y +A+ +A+ YQ+A+ +
Sbjct: 67 QLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 116
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 1e-18
Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 1/127 (0%)
Query: 79 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYE 137
++ + P N GN G +A+ Y A++ P +A + N A+ Y +
Sbjct: 3 HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62
Query: 138 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALT 197
+ +A+ ++ I +P F++ Y AL+ + +A+ Y + L L S +A
Sbjct: 63 LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAAD 122
Query: 198 NLGNIYM 204
M
Sbjct: 123 GYQRCMM 129
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 1e-17
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 232 NLAVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 284
+LA++ K +GN Y A+ Y E ++ +P A NR Y ++ A++D
Sbjct: 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDC 73
Query: 285 IRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
I + PT + + A+A + A+ Y++AL L EA
Sbjct: 74 EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGY 124
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 1e-15
Identities = 23/160 (14%), Positives = 47/160 (29%), Gaps = 34/160 (21%)
Query: 147 YYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW 206
++ +P N GN G +A++ Y + + P + +N
Sbjct: 4 HHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNR------- 56
Query: 207 NMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVN 266
AA Y K + A+ E ++++P G
Sbjct: 57 -----AACYTK----------------------LLEFQLALKDCEECIQLEPTFIKGYTR 89
Query: 267 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 306
+ + + T A+ Y +A+ + + EA
Sbjct: 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 4e-11
Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 35/145 (24%)
Query: 115 YQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 173
+ P+ A+ N + +++G A+ +Y +AI +P+ + Y+N +
Sbjct: 5 HHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL 64
Query: 174 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL 233
A++ +C+ L+P ++ K +
Sbjct: 65 EFQLALKDCEECIQLEP-----------------------TFIKG-----------YTRK 90
Query: 234 AVIYKQQGNYADAISCYNEVLRIDP 258
A + +Y A+ Y + L +D
Sbjct: 91 AAALEAMKDYTKAMDVYQKALDLDS 115
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 8e-10
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 250 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 309
++ ++P A + N+GN + G A++ Y AI P A+ ++N A+ Y
Sbjct: 5 HHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL 64
Query: 310 HVEAAIKSYKQALLLRPDFPEA 331
+ A+K ++ + L P F +
Sbjct: 65 EFQLALKDCEECIQLEPTFIKG 86
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 3e-09
Identities = 22/104 (21%), Positives = 41/104 (39%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+KG +A + +A+ NP +SN Q A E ++++PTF
Sbjct: 27 FQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG 86
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA 104
++ A D +A+ Y++A+ L + +A A
Sbjct: 87 YTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 7e-19
Identities = 25/100 (25%), Positives = 42/100 (42%)
Query: 25 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 84
D + GN A+ +A Y +AL I P I SN A + SG +A + + A
Sbjct: 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELA 71
Query: 85 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
+ P + A+ LG + + A Y++ ++ N
Sbjct: 72 TVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 2e-17
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 7/108 (6%)
Query: 234 AVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 286
+ K +GN Y+ AI Y + L I P L NR Y G+ A +D
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 287 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCN 334
A + P ++A + L A D + A ++Y++ + +
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 2e-16
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Query: 93 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 151
D + GN A +AI Y +A+ P N I N A+ Y GQ + A + A
Sbjct: 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELA 71
Query: 152 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQA 195
DP++ +A++ LG A D+ A + Y + + + +
Sbjct: 72 TVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSD 115
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 3e-12
Identities = 26/168 (15%), Positives = 45/168 (26%), Gaps = 39/168 (23%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
+ + GNA +AI Y Q LS+ P++P L+N AA+Y
Sbjct: 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNR------------AAAYSA-- 57
Query: 220 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 279
G + A +DP + G ++
Sbjct: 58 --------------------SGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKG 97
Query: 280 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 327
A + Y + I + + I+ + D
Sbjct: 98 AKEAYEKGIEAEGNGGSDAMK-----RGLETTKRKIEEANRGAEPPAD 140
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 2e-11
Identities = 26/188 (13%), Positives = 52/188 (27%), Gaps = 39/188 (20%)
Query: 117 RAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 176
R++ P + + + R + AI Y QA+ P +N A G+ +
Sbjct: 3 RSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHE 62
Query: 177 EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVI 236
+A + + P Y KA ++ L +
Sbjct: 63 KAAEDAELATVVDP-----------------------KYSKA-----------WSRLGLA 88
Query: 237 YKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 296
+Y A Y + + + + RG + I++ R +
Sbjct: 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG-----LETTKRKIEEANRGAEPPADDVD 143
Query: 297 AHANLASA 304
A +
Sbjct: 144 DAAGASRG 151
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 2e-09
Identities = 21/99 (21%), Positives = 39/99 (39%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
M + ++A QAL++ P SN A G ++A A + P ++ A
Sbjct: 22 MARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKA 81
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLG 99
WS L + D A + Y++ ++ + + G
Sbjct: 82 WSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 5e-08
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 256 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 315
+D L + GN + AI Y +A++I P +N A+AY SG E A
Sbjct: 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAA 65
Query: 316 KSYKQALLLRPDFPEA 331
+ + A ++ P + +A
Sbjct: 66 EDAELATVVDPKYSKA 81
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 82.0 bits (202), Expect = 4e-17
Identities = 34/255 (13%), Positives = 63/255 (24%), Gaps = 54/255 (21%)
Query: 93 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI 152
D + +Y+ A + +A A + G D A
Sbjct: 38 DLCVQAATIYRLRKELNLAGDSFLKA-------------ADYQKKAGNEDEAG------- 77
Query: 153 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ------ALTNLGNIY-ME 205
Y K G A+ + + Q LG I +
Sbjct: 78 -------NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND 130
Query: 206 WNMLPAAASYYKATLAVTTGLSAP------FNNLAVIYKQQGNYADAISCYNEVLRID-- 257
+ A Y+ + F A + G Y +A Y+++++
Sbjct: 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190
Query: 258 -----PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH-----ANLASAYK- 306
D + +G A + + P A++ +L A
Sbjct: 191 NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNE 250
Query: 307 -DSGHVEAAIKSYKQ 320
DS + K +
Sbjct: 251 GDSEQLSEHCKEFDN 265
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 77.4 bits (190), Expect = 1e-15
Identities = 39/286 (13%), Positives = 77/286 (26%), Gaps = 70/286 (24%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 61
+ EAA C QA + + + + A +L+A Q
Sbjct: 29 DSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQ------- 67
Query: 62 SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 121
++G+ + A Y EA +K+ G A+ + A+Q
Sbjct: 68 -------KKAGNEDEAGNTYVEA--------------YKCFKSGGNSVNAVDSLENAIQI 106
Query: 122 RPN-------AIAFGNLASTYY-ERGQADMAILYYKQAIGC------DPRFLEAYNNLGN 167
+ A L + AI Y+ A + + +
Sbjct: 107 FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD 166
Query: 168 ALKDVGRVDEAIQCYNQCLS-------LQPSHPQALTNLGNIYMEWNMLPAAASYYKATL 220
G+ EA Y++ + Q S G + AAA +
Sbjct: 167 LKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226
Query: 221 AVTTGLSAP-----FNNLAVIYKQQ--GNYADAISCYNEVLRIDPL 259
+ + +L + ++ ++ +R+D
Sbjct: 227 SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 4e-17
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 130 NLASTYYERGQADMAILYYKQAIGCDPR-FLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 188
+G + A+ ++ + +P EAY +GNA + +G +A+ Y + L
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 189 QPSHP--QALTNLGNIYMEWN 207
P P QA + +I +N
Sbjct: 65 NPDSPALQARKMVMDILNFYN 85
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 9e-15
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 232 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGL-VNRGNTYKEIGRVTDAIQDYIRAITI 290
QG+ +A+ E L+ +P+ D GN Y+++G A+ +Y AI +
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 291 RPTMAEAHAN 300
P A
Sbjct: 65 NPDSPALQAR 74
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 1e-14
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 266 NRGNTYKEIGRVTDAIQDYIRAITIRPT-MAEAHANLASAYKDSGHVEAAIKSYKQALLL 324
G + +A+Q + P EA+ + +AY+ G + A+ +Y+ A+ L
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 325 RPDFPEA 331
PD P
Sbjct: 65 NPDSPAL 71
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 2e-14
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 17/106 (16%)
Query: 63 NLAGLFMESGDLNRALQYYKEAVKLKPTFPD-AYLNLGNVYKALGMPQEAIMCYQRAVQT 121
+ GD+ ALQ +E ++ +P D AY +GN Y+ LG Q+A+ YQ A++
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 122 RPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN 167
P++ A R + +Y + YN L +
Sbjct: 65 NPDSPA-------LQARKMVMDILNFYNKD---------MYNQLEH 94
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-12
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 29 NLGNLMKAQGLVQEAYSCYLEALRIQPT-FAIAWSNLAGLFMESGDLNRALQYYKEAVKL 87
+ QG ++ A E L+ +P A+ + + + GD +AL Y+ A++L
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 88 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRA 118
P P A M + + Y +
Sbjct: 65 NPDSPALQ--------ARKMVMDILNFYNKD 87
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 1e-11
Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 33/95 (34%)
Query: 164 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 223
L + G ++ A+Q + L +P +YY
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVG------------------KDEAYY------- 39
Query: 224 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 258
+ Y++ G++ A++ Y + ++P
Sbjct: 40 --------LMGNAYRKLGDWQKALNNYQSAIELNP 66
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 3e-11
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVD-AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI 59
+ +G + A Q + L P+ D A+ +GN + G Q+A + Y A+ + P
Sbjct: 11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70
Query: 60 AWSNLAGLFMESGDLNRALQYYKEA 84
+ + L +Y +
Sbjct: 71 LQAR--------KMVMDILNFYNKD 87
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 8e-17
Identities = 29/110 (26%), Positives = 45/110 (40%)
Query: 15 QALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDL 74
+ +NP L N GN +G A Y EA++ P AI +SN A + +
Sbjct: 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63
Query: 75 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
RAL ++L F Y+ A+ +A Y+ A+Q P+
Sbjct: 64 QRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS 113
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 1e-15
Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 7/111 (6%)
Query: 232 NLAVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 284
LA K +GN Y A+ YNE ++ DP A NR ++ A+ D
Sbjct: 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDC 70
Query: 285 IRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
I + + + A+ A ++Y+ AL + P EA +
Sbjct: 71 DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 4e-15
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 9/119 (7%)
Query: 82 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 140
+ A + K N GN Y G A+ Y AV+ P NAI + N A+ + +
Sbjct: 11 ELAQEEK--------NKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME 62
Query: 141 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 199
A+ I D +F++ Y L + +A + Y L + PS+ +A +
Sbjct: 63 FQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 5e-12
Identities = 23/152 (15%), Positives = 48/152 (31%), Gaps = 34/152 (22%)
Query: 155 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 214
+P + N GN G A++ YN+ + P + A
Sbjct: 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN--------------------AI 48
Query: 215 YYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 274
Y +N A + + A+ + +R+D G + + +
Sbjct: 49 LY--------------SNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94
Query: 275 GRVTDAIQDYIRAITIRPTMAEAHANLASAYK 306
+ A + Y A+ + P+ EA + + +
Sbjct: 95 REWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 9e-08
Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 37/130 (28%)
Query: 129 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 188
GN Y+++G A+ +Y +A+ DP Y+N L + A+ + C+ L
Sbjct: 20 GN---EYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL 76
Query: 189 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 248
+ K + A ++ A
Sbjct: 77 DS-----------------------KFIKG-----------YIRKAACLVAMREWSKAQR 102
Query: 249 CYNEVLRIDP 258
Y + L++DP
Sbjct: 103 AYEDALQVDP 112
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 2e-07
Identities = 18/80 (22%), Positives = 32/80 (40%)
Query: 252 EVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHV 311
+ I+P A N+GN Y + G A++ Y A+ P A ++N A+
Sbjct: 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63
Query: 312 EAAIKSYKQALLLRPDFPEA 331
+ A+ + L F +
Sbjct: 64 QRALDDCDTCIRLDSKFIKG 83
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 3e-06
Identities = 18/103 (17%), Positives = 42/103 (40%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+KG A + +A+ +P +SN + Q A +R+ F
Sbjct: 24 FKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 103
+ A + + ++A + Y++A+++ P+ +A + N +
Sbjct: 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 2e-16
Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 7/109 (6%)
Query: 234 AVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 286
A + +G + +A+ Y E+++ P A G NR ++ +AI D +
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 287 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
AI P A+ A+A +A+++ A + +
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR 112
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 9e-16
Identities = 18/100 (18%), Positives = 31/100 (31%)
Query: 25 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 84
+ G + A Y E ++ P A +SN A + A+ +A
Sbjct: 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 64
Query: 85 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
++ P F AY+ A+ A+ A
Sbjct: 65 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 104
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 3e-15
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 1/109 (0%)
Query: 93 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 151
+ G Y A+ Y ++ P +A + N A+ + AI +A
Sbjct: 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 64
Query: 152 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 200
I DP F+ AY A V A++ + + +
Sbjct: 65 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 113
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-11
Identities = 17/142 (11%), Positives = 36/142 (25%), Gaps = 34/142 (23%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
E G A++ Y + + P A Y
Sbjct: 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED--------------------ARGY--- 41
Query: 220 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 279
+N A + ++ +AI+ N+ + DP + + +
Sbjct: 42 -----------SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYAS 90
Query: 280 AIQDYIRAITIRPTMAEAHANL 301
A++ A T + +
Sbjct: 91 ALETLDAARTKDAEVNNGSSAR 112
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 15/99 (15%), Positives = 28/99 (28%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
K A + + + P +SN + EA + +A+ P F A
Sbjct: 15 FTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 74
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLG 99
+ A + + AL+ A +
Sbjct: 75 YIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 113
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 3e-16
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 9/119 (7%)
Query: 82 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 140
++ +LK GN ++G +A+ CY A++ P N + + N ++ Y ++G
Sbjct: 2 EQVNELK--------EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD 53
Query: 141 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 199
A + + P + + Y+ AL+ + R +EA + Y + L + ++PQ L
Sbjct: 54 YQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 3e-16
Identities = 25/101 (24%), Positives = 46/101 (45%)
Query: 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 83
V+ GN + G + +A CY EA+++ P + +SN + + + GD +A + +
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 84 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
V LKP + Y + L +EA Y+ ++ N
Sbjct: 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 3e-15
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 234 AVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 286
K++GN DA+ CY+E +++DP NR Y + G A +D +
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 287 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
+ ++P + ++ A+A + E A ++Y++ L + P+ L
Sbjct: 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 2e-11
Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 34/145 (23%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
GN VG +D+A+QCY++ + L P N Y
Sbjct: 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDP------HN--------------HVLY--- 41
Query: 220 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 279
+N + Y ++G+Y A + + + P G + + + R +
Sbjct: 42 -----------SNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 90
Query: 280 AIQDYIRAITIRPTMAEAHANLASA 304
A + Y + + L +
Sbjct: 91 AKRTYEEGLKHEANNPQLKEGLQNM 115
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 7e-08
Identities = 23/130 (17%), Positives = 39/130 (30%), Gaps = 37/130 (28%)
Query: 129 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 188
GN G D A+ Y +AI DP Y+N A G +A + + + L
Sbjct: 11 GN---KALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67
Query: 189 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 248
+P + K ++ A + + +A
Sbjct: 68 KP-----------------------DWGKG-----------YSRKAAALEFLNRFEEAKR 93
Query: 249 CYNEVLRIDP 258
Y E L+ +
Sbjct: 94 TYEEGLKHEA 103
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 1e-07
Identities = 23/101 (22%), Positives = 44/101 (43%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+ G +++A QC +A+ L+P +SN +G Q+AY + + ++P +
Sbjct: 15 LSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKG 74
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 101
+S A A + Y+E +K + P L N+
Sbjct: 75 YSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 4e-16
Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 4/133 (3%)
Query: 25 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 84
+ N + A Y +A+ + P+ AI + N + ++ + AL A
Sbjct: 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 73
Query: 85 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMA 144
++L + Y ALG + A+ Y+ V+ +P+ A Y+ +
Sbjct: 74 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD----AKMKYQECNKIVK 129
Query: 145 ILYYKQAIGCDPR 157
+++AI D
Sbjct: 130 QKAFERAIAGDEH 142
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 4e-16
Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 9/122 (7%)
Query: 82 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 140
K A +LK N Y + AI Y +A++ P NAI +GN + Y
Sbjct: 11 KRAEELK--------TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC 62
Query: 141 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 200
A+ +AI D ++++ Y + +G+ A++ Y + ++P A
Sbjct: 63 YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 122
Query: 201 NI 202
Sbjct: 123 EC 124
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 7e-15
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query: 234 AVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 286
A K Q N Y +AI Y++ + ++P A NR Y A+ D R
Sbjct: 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 287 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
AI + + + A++ G AA++ Y+ + ++P +A
Sbjct: 73 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 121
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 5e-12
Identities = 29/164 (17%), Positives = 50/164 (30%), Gaps = 36/164 (21%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
E N + AI+ Y+Q + L PS+ A YY
Sbjct: 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSN--------------------AIYY--- 50
Query: 220 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 279
N ++ Y + Y A+ + +D G R + +G+
Sbjct: 51 -----------GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 99
Query: 280 AIQDYIRAITIRPTMAEAHANLASAYK--DSGHVEAAIKSYKQA 321
A++DY + ++P +A K E AI +
Sbjct: 100 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 8e-07
Identities = 23/134 (17%), Positives = 38/134 (28%), Gaps = 34/134 (25%)
Query: 125 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 184
A A+ Y++ + AI +Y QAI +P Y N A A+ +
Sbjct: 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 185 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 244
+ L Y K + A G +
Sbjct: 73 AIELDK-----------------------KYIKG-----------YYRRAASNMALGKFR 98
Query: 245 DAISCYNEVLRIDP 258
A+ Y V+++ P
Sbjct: 99 AALRDYETVVKVKP 112
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 9/56 (16%), Positives = 20/56 (35%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 56
+R A +A+ L+ + + A G + A Y ++++P
Sbjct: 58 LRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 113
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-14
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Query: 25 DAHSNLGN-LMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 83
GN L EA +CY A+ P A+ ++N A +++ +AL +
Sbjct: 10 QELKEQGNRLFV-GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 84 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
A++L A+ LG + EAI QRA
Sbjct: 69 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 2e-14
Identities = 21/89 (23%), Positives = 38/89 (42%)
Query: 239 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 298
Y +A +CY + +PL A NR Y ++ + A+ D RA+ + +AH
Sbjct: 21 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 80
Query: 299 ANLASAYKDSGHVEAAIKSYKQALLLRPD 327
L + + AI + ++A L +
Sbjct: 81 FFLGQCQLEMESYDEAIANLQRAYSLAKE 109
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 6e-14
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 82 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 140
A +LK GN EA CY RA+ P A+ + N A Y + Q
Sbjct: 7 PSAQELK--------EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ 58
Query: 141 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 196
+ A+ ++A+ D + ++A+ LG ++ DEAI + SL
Sbjct: 59 PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 114
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 4e-09
Identities = 21/138 (15%), Positives = 36/138 (26%), Gaps = 34/138 (24%)
Query: 155 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 214
+ GN L + EA CY + ++ P TN A
Sbjct: 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNR-----------ALC- 52
Query: 215 YYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 274
Y + A++ L +D + G E+
Sbjct: 53 ----------------------YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 90
Query: 275 GRVTDAIQDYIRAITIRP 292
+AI + RA ++
Sbjct: 91 ESYDEAIANLQRAYSLAK 108
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 3e-07
Identities = 18/130 (13%), Positives = 33/130 (25%), Gaps = 37/130 (28%)
Query: 129 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 188
GN + + A Y +AI +P Y N + + ++A+ + L L
Sbjct: 16 GN---RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 72
Query: 189 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 248
KA L + +Y +AI+
Sbjct: 73 DG-----------------------QSVKA-----------HFFLGQCQLEMESYDEAIA 98
Query: 249 CYNEVLRIDP 258
+
Sbjct: 99 NLQRAYSLAK 108
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 9e-06
Identities = 21/77 (27%), Positives = 32/77 (41%)
Query: 255 RIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAA 314
+ +A L +GN + +A Y RAIT P +A + N A Y E A
Sbjct: 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQA 62
Query: 315 IKSYKQALLLRPDFPEA 331
+ ++AL L +A
Sbjct: 63 LADCRRALELDGQSVKA 79
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 14/55 (25%), Positives = 22/55 (40%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 55
++ + +A CR+AL L+ V AH LG EA + A +
Sbjct: 54 LKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 2e-13
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 12/125 (9%)
Query: 82 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP----NAIAFGNLASTYYE 137
+L+ GN G A+ Y +A+ A+ N A+ + +
Sbjct: 26 SSVEQLR--------KEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK 77
Query: 138 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALT 197
D A +AI D ++A AL+ +GR+D+A+ +C+SL+P +
Sbjct: 78 LEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQE 137
Query: 198 NLGNI 202
L NI
Sbjct: 138 ALRNI 142
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 6e-13
Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Query: 239 QQGNYADAISCYNEVLRIDPLAADGLV---NRGNTYKEIGRVTDAIQDYIRAITIRPTMA 295
+ G+Y A++ Y + L +D D V NR + ++ A + +AI
Sbjct: 40 KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV 99
Query: 296 EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
+A + A + G ++ A+ ++ + L P L
Sbjct: 100 KALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 9e-12
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 5/109 (4%)
Query: 20 NPLLVDAHSNLGN-LMKAQGLVQEAYSCYLEALRIQPTF---AIAWSNLAGLFMESGDLN 75
V+ GN L K G A + Y +AL + T A+ N A ++ D +
Sbjct: 24 GASSVEQLRKEGNELFKC-GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYD 82
Query: 76 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
+A +A++ A + LG +A++ QR V P
Sbjct: 83 KAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 4e-11
Identities = 25/147 (17%), Positives = 44/147 (29%), Gaps = 31/147 (21%)
Query: 155 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 214
+E GN L G A+ Y Q L L + A
Sbjct: 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD-----------------QAV 66
Query: 215 YYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 274
+ N A + + +Y A + ++ + D L R +++
Sbjct: 67 LH--------------RNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKL 112
Query: 275 GRVTDAIQDYIRAITIRPTMAEAHANL 301
GR+ A+ D R +++ P L
Sbjct: 113 GRLDQAVLDLQRCVSLEPKNKVFQEAL 139
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 17/115 (14%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVD----------AHSNLGNLMKAQGLVQEAYSCYLEA 50
+ G A QAL L+ D H L + KA EA +A
Sbjct: 39 FKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKA---ETEAS----KA 91
Query: 51 LRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 105
+ A + + G L++A+ + V L+P L N+
Sbjct: 92 IEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 4e-13
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 25 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 84
+ GN + QGL +EA CY + + QP + +SN A ++ G+ +A+Q ++
Sbjct: 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64
Query: 85 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
++ T + Y L + Q A+ Q V
Sbjct: 65 LRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVV 99
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 6e-13
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 239 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 298
+QG Y +A+ CY++++ P G N+ ++G T AIQ + + T
Sbjct: 16 KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVA 75
Query: 299 ANLASAYKDSGHVEAAIKSYKQAL 322
Y+ + A+ S + +
Sbjct: 76 IRSKLQYR-LELAQGAVGSVQIPV 98
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 5e-12
Identities = 18/97 (18%), Positives = 32/97 (32%)
Query: 68 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIA 127
+ G A+ Y + + +P P Y N LG +AI Q+ ++ A
Sbjct: 14 LFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH 73
Query: 128 FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNN 164
+ Y A A+ + + E Y+
Sbjct: 74 VAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGYDR 110
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 9e-10
Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 10/107 (9%)
Query: 82 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 140
+ K K GN G+ +EA+ CY + + +P N + + N A + G+
Sbjct: 2 SQFEKQK--------EQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGE 53
Query: 141 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 187
AI +Q + + + A+ +
Sbjct: 54 YTQAIQMCQQGLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVV 99
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 3e-09
Identities = 25/129 (19%), Positives = 39/129 (30%), Gaps = 35/129 (27%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
E GN+L G EA+ CY+Q ++ QP +P +N A + K
Sbjct: 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNK------------AMALIK-- 50
Query: 220 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 279
G Y AI + LR A + Y+ +
Sbjct: 51 --------------------LGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR-LELAQG 89
Query: 280 AIQDYIRAI 288
A+ +
Sbjct: 90 AVGSVQIPV 98
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 3e-09
Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Query: 129 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 188
GN + +++G A+ Y Q I P+ Y+N AL +G +AIQ Q L
Sbjct: 11 GN---SLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67
Query: 189 QPSHPQALTNLGNIYMEWNMLPAAASYYKA 218
+ Y A S
Sbjct: 68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIP 97
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 6e-07
Identities = 16/71 (22%), Positives = 28/71 (39%)
Query: 261 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 320
+ +GN+ + G +A+ Y + IT +P ++N A A G AI+ +Q
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
Query: 321 ALLLRPDFPEA 331
L
Sbjct: 64 GLRYTSTAEHV 74
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-06
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 1/86 (1%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
++G EA C Q + P +SN + G +A + LR T
Sbjct: 15 FKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV 74
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVK 86
+ A+ + V
Sbjct: 75 AIRSKLQYRL-ELAQGAVGSVQIPVV 99
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 69.6 bits (170), Expect = 4e-13
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Query: 25 DAHSNLGN-LMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 83
GN L EA +CY A+ P A+ ++N A +++ +AL +
Sbjct: 5 QELKEQGNRLFV-GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 84 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
A++L A+ LG + EAI QRA
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 7e-13
Identities = 21/89 (23%), Positives = 38/89 (42%)
Query: 239 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 298
Y +A +CY + +PL A NR Y ++ + A+ D RA+ + +AH
Sbjct: 16 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 75
Query: 299 ANLASAYKDSGHVEAAIKSYKQALLLRPD 327
L + + AI + ++A L +
Sbjct: 76 FFLGQCQLEMESYDEAIANLQRAYSLAKE 104
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 2e-12
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 82 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 140
A +LK GN EA CY RA+ P A+ + N A Y + Q
Sbjct: 2 PSAQELK--------EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ 53
Query: 141 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 196
+ A+ ++A+ D + ++A+ LG ++ DEAI + SL
Sbjct: 54 PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 109
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 2e-07
Identities = 23/145 (15%), Positives = 41/145 (28%), Gaps = 34/145 (23%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
+ GN L + EA CY + ++ P A YY
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV--------------------AVYY--- 41
Query: 220 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 279
N A+ Y + A++ L +D + G E+ +
Sbjct: 42 -----------TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDE 90
Query: 280 AIQDYIRAITIRPTMAEAHANLASA 304
AI + RA ++ + +
Sbjct: 91 AIANLQRAYSLAKEQRLNFGDDIPS 115
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 3e-06
Identities = 17/98 (17%), Positives = 33/98 (33%)
Query: 123 PNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
P+A + + + A Y +AI +P Y N + + ++A+
Sbjct: 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATL 220
+ L L +A LG +E A + +
Sbjct: 62 RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAY 99
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 21/72 (29%), Positives = 31/72 (43%)
Query: 260 AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYK 319
+A L +GN + +A Y RAIT P +A + N A Y E A+ +
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 320 QALLLRPDFPEA 331
+AL L +A
Sbjct: 63 RALELDGQSVKA 74
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 7e-04
Identities = 14/55 (25%), Positives = 22/55 (40%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 55
++ + +A CR+AL L+ V AH LG EA + A +
Sbjct: 49 LKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 9e-12
Identities = 29/252 (11%), Positives = 57/252 (22%), Gaps = 35/252 (13%)
Query: 65 AGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNL-------GNVYKALGMPQEAIMCYQR 117
+ + M R+L + E + DA++ +
Sbjct: 13 SAVSMLPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSG 72
Query: 118 AVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDE 177
+VQ + + R + + G +
Sbjct: 73 SVQISMSTLNA---------RIAIGGLYGDITYPVTSPLAITMGF---AACEAAQGNYAD 120
Query: 178 AIQCYNQCLSLQPSHPQALTNLGNIYME---W----NMLPAAASYYKATLAVTTGLSAPF 230
A++ H A +Y W + + +A + LA G+
Sbjct: 121 AMEALEAAPVAGSEHLVAWM-KAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGV---- 175
Query: 231 NNLAVIYKQQGNYADAISCYNEVL---RIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRA 287
V + +A E + A + G + A+
Sbjct: 176 -AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234
Query: 288 ITIRPTMAEAHA 299
T P A A
Sbjct: 235 QTTHPEPKVAAA 246
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 8e-07
Identities = 35/282 (12%), Positives = 68/282 (24%), Gaps = 41/282 (14%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL-RIQPTFAIAWS 62
+ + + DA + ++ + I+ S
Sbjct: 20 MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMS 79
Query: 63 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 122
L G L + Y + + A G +A+ + A
Sbjct: 80 TLNARI-AIGGLYGDITYPVT------SPLAITMGFAACEAAQGNYADAMEALEAAPVAG 132
Query: 123 PNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL--EAYNNLGNALKDVGRVDEAIQ 180
+ A Y + I K A +FL A G A ++ EA +
Sbjct: 133 SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAER 192
Query: 181 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 240
+ A A ++Y A+ + Q
Sbjct: 193 RLTEANDSPAGEACA---------------RAIAWYL----------------AMARRSQ 221
Query: 241 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ 282
GN + A++ + P + +Y+ + I
Sbjct: 222 GNESAAVALLEWLQTTHPEPKVAAALKDPSYRLKTTTAEQIA 263
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 1e-11
Identities = 46/260 (17%), Positives = 100/260 (38%), Gaps = 39/260 (15%)
Query: 8 EAAQCCRQALALNPLLVDAHSNLGNL-MKAQGLVQ---EAYSCYLEALRIQPTFAIAWSN 63
+AQ R++ +L ++ G+ Q ++ + ++ + +IA
Sbjct: 205 ISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS--AEQGNSIAQFR 260
Query: 64 LAGLFME----SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK--ALGMPQ---EAIMC 114
L + + + + +AL++Y+++ + D L ++Y A G+ + +AI
Sbjct: 261 LGYILEQGLAGAKEPLKALEWYRKSAEQG--NSDGQYYLAHLYDKGAEGVAKNREQAISW 318
Query: 115 YQRAVQTRPNAIAFGNLASTYYERGQA---DMAILYYKQAIGCDPRFLEAYNNLGNALKD 171
Y ++ + + +A A NL + Y+ G A+ ++++A A NLGNAL
Sbjct: 319 YTKSAE-QGDATAQANLGAIYFRLGSEEEHKKAVEWFRKA--AAKGEKAAQFNLGNALLQ 375
Query: 172 VGR-----VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP----AAASYYKATLAV 222
G+ +A + A LG IY + A +++ A
Sbjct: 376 -GKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFD--TAS 430
Query: 223 TTGLSAPFNNLAVIYKQQGN 242
T ++ I +++
Sbjct: 431 TNDMNLFGTENRNITEKKLT 450
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 5e-09
Identities = 52/285 (18%), Positives = 96/285 (33%), Gaps = 57/285 (20%)
Query: 73 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA-LGMPQ---EAIMCYQRAVQTRPNAIAF 128
N L+ K+ + A L LG Y + +A+ ++RA + A
Sbjct: 22 LGNVNLEQLKQKAESG--EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-YTPAE 78
Query: 129 GNLASTYYERGQ-----ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR-----VDEA 178
L Y G+ A+++YK+A +A NLG + G E+
Sbjct: 79 YVLG-LRYMNGEGVPQDYAQAVIWYKKA--ALKGLPQAQQNLGVMYHE-GNGVKVDKAES 134
Query: 179 IQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP----AAASYYKATLAVTTGLSAPFNNLA 234
++ + + + ++G+ Y E + + A +Y A G N L
Sbjct: 135 VKWFRL--AAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYS--KAAEQGNVWSCNQLG 190
Query: 235 VIYKQ-QG---NYADAISCYNEVLRIDPLAAD-----GLVNRGNTYKEIGRVTDAIQDYI 285
+Y + G N A + Y +A G ++ + Y G QDY
Sbjct: 191 YMYSRGLGVERNDAISAQWYR-------KSATSGDELGQLHLADMYYF-GIGVT--QDYT 240
Query: 286 RAITIRPTMAE-----AHANLASAYKDSGHVE----AAIKSYKQA 321
++ + AE A L + A++ Y+++
Sbjct: 241 QSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKS 285
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 49/295 (16%), Positives = 85/295 (28%), Gaps = 37/295 (12%)
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ---EAIMCYQRAVQ 120
LA ++ GD A Q Y++ +L + +A + L ++ P +A Y+ A
Sbjct: 9 LANEALKRGDTVTAQQNYQQLAELG--YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD 66
Query: 121 TRPNAIAFGNLASTYYERG---QADM--AILYYKQAIGCDPRFLEAYNNLGNALKDVGRV 175
T + A L + +A+ A K+A L
Sbjct: 67 T--SPRAQARLGRLLAAKPGATEAEHHEAESLLKKA--FANGEGNTLIPLAMLYLQYPHS 122
Query: 176 DEAIQCYNQCLSLQPS-HPQALTNLGNIYMEW----NMLPAAASYYKATLAVTTGLSAPF 230
+ Q Q + +P+A +Y L KA L +
Sbjct: 123 FPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN---TTDICY 179
Query: 231 NNLAVIYKQQG---NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRA 287
LA +Y+++ A+ + + G T D A
Sbjct: 180 VELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVL-GDATLGTPDEKTA 236
Query: 288 ITIRPTMAEAHA----NLASAYKDSGHV---EAAIKSYKQALLLRPDFPEATCNL 335
+ +A + +LA D + E +K D P A L
Sbjct: 237 QALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLL 289
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 42/267 (15%), Positives = 82/267 (30%), Gaps = 37/267 (13%)
Query: 8 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT-FAIAWSNLAG 66
EA ++A A + L L + + + Q + A
Sbjct: 92 EAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVL 149
Query: 67 LFMESG---DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ---EAIMCYQRAVQ 120
L+ G ++ +A T Y+ L VY+ P+ E + + V
Sbjct: 150 LYRTQGTYDQHLDDVERICKAAL--NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS 207
Query: 121 TRPNAIAFGNLASTY-YERGQADM-----AILYYKQAIGCDPRFLEAYNNLGNALKDVGR 174
R A + A ++ P ++ +L L D
Sbjct: 208 -RGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYP---ASWVSLAQLLYDFPE 263
Query: 175 V---DEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP----AAASYYKATLAVTTGLS 227
+ ++ ++ + P+A LG +Y E +P AA ++++ AV ++
Sbjct: 264 LGDVEQMMKYLDN--GRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFE--KAVGREVA 319
Query: 228 APFNNLAVIYKQ-QG---NYADAISCY 250
A L IY++ A+
Sbjct: 320 A-DYYLGQIYRRGYLGKVYPQKALDHL 345
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 4e-06
Identities = 26/256 (10%), Positives = 71/256 (27%), Gaps = 39/256 (15%)
Query: 8 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ---EAYSCYLEALRIQPTFAIAWSNL 64
+ + +A + L + + + + E + A ++
Sbjct: 162 DDVERICKAALNTT--DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSV 219
Query: 65 AGLFMESG----DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ---EAIMCYQR 117
A + ++ D A ++ +P ++++L + + +
Sbjct: 220 ARVLGDATLGTPDEKTAQALLEKIAP---GYPASWVSLAQLLYDFPELGDVEQMMKYLDN 276
Query: 118 AVQTRPNAIAFGNLASTYYE-RGQA---DMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 173
A L YYE + A ++++A+G + A LG + G
Sbjct: 277 GRA-ADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAVGREV---AADYYLGQIYRR-G 331
Query: 174 R-----VDEAIQCYNQCLSLQPSHPQALTNLGNIYM-----EWNMLPAAASYYKATLAVT 223
+A+ + + A + ++ + + A + + LA
Sbjct: 332 YLGKVYPQKALDHLLT--AARNGQNSADFAIAQLFSQGKGTKPD-PLNAYVFSQ--LAKA 386
Query: 224 TGLSAPFNNLAVIYKQ 239
+ +
Sbjct: 387 QDTPEANDLATQLEAP 402
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 3e-11
Identities = 27/161 (16%), Positives = 48/161 (29%), Gaps = 26/161 (16%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
G G+ +A+ Y + +S L N A +
Sbjct: 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW----------LEYESSFSNEEAQKAQALRLA 197
Query: 220 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 279
NLA+ + + ++ AI N+ L +D GL RG + +
Sbjct: 198 S---------HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFEL 248
Query: 280 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 320
A D+ + + + P A LA + I+
Sbjct: 249 ARADFQKVLQLYPNNKAAKTQLAV-------CQQRIRRQLA 282
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 8e-08
Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 24/138 (17%)
Query: 81 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFG----------- 129
+++ +K G VY G ++A++ Y++ V +F
Sbjct: 144 LEQSTIVK--------ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR 195
Query: 130 -----NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 184
NLA + + AI +A+ D + + G A V + A + +
Sbjct: 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQK 255
Query: 185 CLSLQPSHPQALTNLGNI 202
L L P++ A T L
Sbjct: 256 VLQLYPNNKAAKTQLAVC 273
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 3e-06
Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 15/117 (12%)
Query: 23 LVDAHSNLGNLMKAQGLVQEAYSCYLEALR---------------IQPTFAIAWSNLAGL 67
G + +G ++A Y + + Q + NLA
Sbjct: 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205
Query: 68 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
++ + A++ +A++L G + A+ + A +Q+ +Q PN
Sbjct: 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 5e-06
Identities = 23/149 (15%), Positives = 49/149 (32%), Gaps = 27/149 (18%)
Query: 232 NLAVIYKQQGN-------YADAISCYNEVLR---------------IDPLAADGLVNRGN 269
+ I K++G Y A+ Y +++ L +N
Sbjct: 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204
Query: 270 TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 329
+ ++ + AI+ +A+ + + + A+ E A +++ L L P+
Sbjct: 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264
Query: 330 EATCNLLHTLQCVCSWEDRDR-----MFS 353
A L Q + R++ MF
Sbjct: 265 AAKTQLAVCQQRIRRQLAREKKLYANMFE 293
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 5e-11
Identities = 28/161 (17%), Positives = 46/161 (28%), Gaps = 22/161 (13%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
EA GN L EAI Y L+ + ++E +
Sbjct: 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK-------NIP 64
Query: 220 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 279
L + N++ Y G+ +A +EVL+ + L R ++ +
Sbjct: 65 L---------YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDE 115
Query: 280 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 320
A +D + P A A V K
Sbjct: 116 AEEDLKLLLRNHPAAASVVAREMKI------VTERRAEKKA 150
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 8e-08
Identities = 19/129 (14%), Positives = 36/129 (27%), Gaps = 15/129 (11%)
Query: 71 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGN 130
D A+ Y++A+ T + L R N + N
Sbjct: 24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVEL---------------DRKNIPLYAN 68
Query: 131 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 190
++ Y G A + + + +A A ++DEA + L P
Sbjct: 69 MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128
Query: 191 SHPQALTNL 199
+ +
Sbjct: 129 AAASVVARE 137
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 5e-05
Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 18/114 (15%)
Query: 29 NLGNLMKAQGLVQEAYSCYLEALR------------------IQPTFAIAWSNLAGLFME 70
GN + Q +EA Y +AL + ++N++ ++
Sbjct: 16 QKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN 75
Query: 71 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
GDL+ A + E +K + T A A EA + ++ P
Sbjct: 76 IGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 1e-10
Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 27/162 (16%)
Query: 160 EAYNNLGNAL-KDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 218
GN K ++EAI Y + L + +L +
Sbjct: 39 FDIKEEGNEFFKK-NEINEAIVKYKEALDFFIHTE---------EWDDQILLDKKKNIEI 88
Query: 219 TLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVT 278
+ NLA Y + +Y AI ++VL+ID L G G +
Sbjct: 89 SC---------NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLE 139
Query: 279 DAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 320
+A ++ +A ++ P + + +K ++
Sbjct: 140 EAKENLYKAASLNPNNLDIRNSYEL-------CVNKLKEARK 174
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 2e-08
Identities = 24/135 (17%), Positives = 51/135 (37%), Gaps = 17/135 (12%)
Query: 68 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIA 127
F + ++N A+ YKEA+ + + ++ ++ ++
Sbjct: 48 FFKKNEINEAIVKYKEALDFFIHTEE-------------WDDQILLDKKKNIE----ISC 90
Query: 128 FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 187
NLA+ Y + AI + + + D ++A LG A G ++EA + + S
Sbjct: 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150
Query: 188 LQPSHPQALTNLGNI 202
L P++ +
Sbjct: 151 LNPNNLDIRNSYELC 165
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 7e-07
Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 28/150 (18%)
Query: 232 NLAVIYKQQGN-------YADAISCYNEVLRIDPLAADG----------------LVNRG 268
A K++GN +AI Y E L + +N
Sbjct: 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95
Query: 269 NTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 328
Y + AI + + I +A L A G +E A ++ +A L P+
Sbjct: 96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155
Query: 329 PEATCNLLHTLQCVCSWEDRDR-----MFS 353
+ + + + +D+ MF
Sbjct: 156 LDIRNSYELCVNKLKEARKKDKLTFGGMFD 185
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 3e-06
Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 18/113 (15%)
Query: 29 NLGN-LMKAQGLVQEAYSCYLEALRI----------------QPTFAIAWSNLAGLFMES 71
GN K + + EA Y EAL + NLA + ++
Sbjct: 43 EEGNEFFK-KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN 101
Query: 72 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
D +A+ + + +K+ A LG G +EA +A PN
Sbjct: 102 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 58.4 bits (140), Expect = 4e-10
Identities = 26/142 (18%), Positives = 43/142 (30%), Gaps = 26/142 (18%)
Query: 84 AVKLKPTFPDAYLNLGNVYKAL--GMPQEAIMCYQRAVQTRP-------------NAIAF 128
+K AYL L + + L G EA +RA++ +A
Sbjct: 1 GMKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCH 60
Query: 129 GNLASTYYERGQADMAILYYKQAIGCDPRFLE-----------AYNNLGNALKDVGRVDE 177
LA D A+ +A+ R E A + AL +GR E
Sbjct: 61 AGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAE 120
Query: 178 AIQCYNQCLSLQPSHPQALTNL 199
A+ + + + +
Sbjct: 121 AMPEFKKVVEMIEERKGETPGK 142
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 53.4 bits (127), Expect = 2e-08
Identities = 20/160 (12%), Positives = 46/160 (28%), Gaps = 35/160 (21%)
Query: 160 EAYNNLGNALKDV--GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYK 217
AY L +A + + G DEA + + + + P P A +
Sbjct: 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMP----------------PEEAFDHA 53
Query: 218 ATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD-----------GLVN 266
A LA ++ +A+ ++ L + + +
Sbjct: 54 GFDAF------CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYS 107
Query: 267 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 306
R +GR +A+ ++ + + + +
Sbjct: 108 RALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMME 147
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 47.6 bits (112), Expect = 2e-06
Identities = 12/113 (10%), Positives = 28/113 (24%), Gaps = 23/113 (20%)
Query: 239 QQGNYADAISCYNEVLRIDPLAADG------------LVNRGNTYKEIGRVTDAIQDYIR 286
G Y +A + + I + +A+ +
Sbjct: 23 VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK 82
Query: 287 AITIRPTMAEAHA-----------NLASAYKDSGHVEAAIKSYKQALLLRPDF 328
A+ E + + A A G A+ +K+ + + +
Sbjct: 83 ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 5e-06
Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 43/140 (30%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVD------------AHSNLGNLMKAQGLVQEAYSCYL 48
+ G +EAA CR+A+ ++ + H+ L + EA
Sbjct: 22 LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSA- 80
Query: 49 EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYL----NLGNVYKA 104
++AL Y+ +L ++ +
Sbjct: 81 --------------------------DKALHYFNRRGELNQDEGKLWISAVYSRALALDG 114
Query: 105 LGMPQEAIMCYQRAVQTRPN 124
LG EA+ +++ V+
Sbjct: 115 LGRGAEAMPEFKKVVEMIEE 134
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 39.9 bits (92), Expect = 9e-04
Identities = 18/77 (23%), Positives = 25/77 (32%), Gaps = 12/77 (15%)
Query: 266 NRGNTYKEIGRVTDAIQDYIRAITIRPTM------------AEAHANLASAYKDSGHVEA 313
+ G +A + RA+ I TM A HA LA A +
Sbjct: 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDE 75
Query: 314 AIKSYKQALLLRPDFPE 330
A+ S +AL E
Sbjct: 76 ALHSADKALHYFNRRGE 92
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 5e-10
Identities = 92/605 (15%), Positives = 175/605 (28%), Gaps = 193/605 (31%)
Query: 37 QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD-LNRALQYYKEAVKLKPTFPDAY 95
+ +++ Y + ++ + S + +++E D L Q + K + Y
Sbjct: 84 EEVLRINYKFLMSPIKTEQ---RQPSMMTRMYIEQRDRLYNDNQVFA---KYNVSRLQPY 137
Query: 96 LNLGNVYKAL---------GMP--------QEAIMCYQRAVQTR-PNAIAFGNLASTYYE 137
L L L G+ + C VQ + I + NL
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDV--CLSYKVQCKMDFKIFWLNLK--NCN 193
Query: 138 RGQADMAI---LYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ 194
+ + + L Y + + + + ++ +IQ + L +
Sbjct: 194 SPETVLEMLQKLLY--------QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 195 ALTNLGNIYMEWNMLPAAASYYKA------TLAVTTGLSAPFNNLAVIYKQQ-------- 240
L L N+ N A + A L +TT + L+
Sbjct: 246 CLLVLLNV---QN-----AKAWNAFNLSCKIL-LTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 241 --------GNYADAISCY-----NEVLRIDPLA--------ADGLVNRGNTYKEIG--RV 277
+ C EVL +P DGL + +K + ++
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL-ATWDNWKHVNCDKL 355
Query: 278 TDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD--FPEATCNL 335
T I+ + + P AE Y+ K + + + P P +L
Sbjct: 356 TTIIESSLNVLE--P--AE--------YR---------KMFDRLSVFPPSAHIPTILLSL 394
Query: 336 LHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYP-IDPMLALEISRKYA 394
+ W D + S+V ++ + S++ I+ P I L +++ +YA
Sbjct: 395 I--------WFDVIK--SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 395 SHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKE 454
H SI+ F+ IP LD Y S G+H + N E
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLD--------QYFYSHIGHH-----------LKNIE 485
Query: 455 NVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDK--------IQILI 506
+ E T +R F+D + K+ ++ + L
Sbjct: 486 HPERM---------TLFRMV-------FLDFRFLE----QKIRHDSTAWNASGSILNTLQ 525
Query: 507 NLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLV 566
L Y + I P ++ + +D+L E L+
Sbjct: 526 QLKFY----KPYICDNDPKYERLVN---------AILDFLPK------------IEENLI 560
Query: 567 HVPHC 571
+
Sbjct: 561 CSKYT 565
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 4e-04
Identities = 49/315 (15%), Positives = 92/315 (29%), Gaps = 85/315 (26%)
Query: 480 EHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG 539
F D A + K + + IL +K + I M + + F
Sbjct: 23 SVFED--AFVDNFDCKDVQDMPKSIL------SKEEIDHII-MSKDAVSGTLRLF----- 68
Query: 540 ASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLP 599
L++ E++V FV + + N L + ++ +
Sbjct: 69 ----WTLLS------------KQEEMVQK----FVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 600 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSAL--WLLRFPAAGEMRLRAYAVAQGVQ 657
+I ++LY D ++F + N+ R P L LL E+R + G
Sbjct: 109 TRMYI-EQRDRLYN-DNQVFAKY-NVSRLQPYLKLRQALL------ELRPAKNVLIDG-- 157
Query: 658 PDQIIFTDVAM----KQEHIRRSSLA-DLFLDTPLCNAHTTGTDILWAGL-----PMITL 707
+ K + +A D+ L + I W L P L
Sbjct: 158 ----------VLGSGK------TWVALDVCLSYKVQCKMDFK--IFWLNLKNCNSPETVL 199
Query: 708 -PLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQAL--------TNK 758
L+K+ ++ + + I + + L + L
Sbjct: 200 EMLQKLLYQIDPNWT-SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 759 LKSVRLTCPLFDTAR 773
+ L+C + T R
Sbjct: 259 WNAFNLSCKILLTTR 273
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 5e-10
Identities = 46/220 (20%), Positives = 83/220 (37%), Gaps = 41/220 (18%)
Query: 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVY-KALGMPQ---EAIM 113
L + D +A +Y+++A LK NLG +Y + G+ + +A
Sbjct: 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAAS 63
Query: 114 CYQRAVQTRPNAIAFGNLASTYYERGQA-----DMAILYYKQAIGCDPRFLEAYNNLGNA 168
Y +A + L + Y GQ + A+ YY +A CD ++ E +LG
Sbjct: 64 FYAKACD-LNYSNGCHLLGN-LYYSGQGVSQNTNKALQYYSKA--CDLKYAEGCASLGGI 119
Query: 169 LKDVGR-----VDEAIQCY----NQCLSLQPSHPQALTNLGNIYMEWNMLP----AAASY 215
D G+ +A++ + + + T LG++Y P A +
Sbjct: 120 YHD-GKVVTRDFKKAVEYFTKACDL------NDGDGCTILGSLYDAGRGTPKDLKKALAS 172
Query: 216 YKATLAVTTGLSAPFNNLAVIYKQ-QG---NYADAISCYN 251
Y A S N +Y +G N+ +A++ Y+
Sbjct: 173 YD--KACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYS 210
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 5e-09
Identities = 48/221 (21%), Positives = 87/221 (39%), Gaps = 37/221 (16%)
Query: 8 EAAQCCRQALALNPLLVDAHSNLGNL-MKAQGLVQ---EAYSCYLEALRIQPTFAIAWSN 63
+AA +A LN + LGNL QG+ Q +A Y +A ++ +A ++
Sbjct: 60 KAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCAS 115
Query: 64 LAGLFMESG-----DLNRALQYYKEAVKLKPTFPDAYLNLGNVY-KALGMPQ---EAIMC 114
L G++ G D +A++Y+ +A L D LG++Y G P+ +A+
Sbjct: 116 LGGIY-HDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALAS 172
Query: 115 YQRAVQTRPNAIAFGNLASTYYERGQ-----ADMAILYYKQAIGCDPRFLEAYNNLGNAL 169
Y +A ++ N Y G+ A+ Y +A C+ NLG
Sbjct: 173 YDKACD-LKDSPGCFNAG-NMYHHGEGATKNFKEALARYSKA--CELENGGGCFNLGAMQ 228
Query: 170 KDVGR-----VDEAIQCYNQCLSLQPSHPQALTNLGNIYME 205
+ G +AI+ + + + A L + ++
Sbjct: 229 YN-GEGVTRNEKQAIENFKK--GCKLGAKGACDILKQLKIK 266
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 57.5 bits (138), Expect = 7e-10
Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 25/122 (20%)
Query: 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD---------- 73
+D + ++ + + + P A + G+ +E
Sbjct: 6 MDTETEFDRILLFE----QIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQM 61
Query: 74 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP-----------QEAIMCYQRAVQTR 122
+ A+ ++EA+ + P +A +GN Y + A +Q+AV +
Sbjct: 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121
Query: 123 PN 124
P+
Sbjct: 122 PD 123
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 1e-09
Identities = 27/136 (19%), Positives = 42/136 (30%), Gaps = 34/136 (25%)
Query: 75 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAST 134
+ Q + K P D G V L Q + A +
Sbjct: 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELS-------------QFHSISDAKQMI--- 62
Query: 135 YYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV-----------DEAIQCYN 183
AI +++A+ DP+ EA +GNA + D A Q +
Sbjct: 63 -------QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQ 115
Query: 184 QCLSLQPSHPQALTNL 199
Q + QP + L +L
Sbjct: 116 QAVDEQPDNTHYLKSL 131
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 1e-08
Identities = 22/145 (15%), Positives = 44/145 (30%), Gaps = 38/145 (26%)
Query: 129 GNLAS----TYYERGQ-ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR--------- 174
G L S T ++R + + +P + G L ++ +
Sbjct: 1 GPLGSMDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ 60
Query: 175 -VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL 233
+ EAI + + L + P +A+ +GN Y + L + K
Sbjct: 61 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAK---------------- 104
Query: 234 AVIYKQQGNYADAISCYNEVLRIDP 258
N+ A + + + P
Sbjct: 105 -------HNFDLATQFFQQAVDEQP 122
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 9e-08
Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 21/124 (16%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM----------KAQGLVQEAYSCYLEAL 51
R + Q NPL D + G ++ A+ ++QEA + + EAL
Sbjct: 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL 73
Query: 52 RIQPTFAIAWSNLAGLFMESGDL-----------NRALQYYKEAVKLKPTFPDAYLNLGN 100
I P A + + L + A Q++++AV +P +L
Sbjct: 74 LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM 133
Query: 101 VYKA 104
KA
Sbjct: 134 TAKA 137
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 2e-07
Identities = 24/159 (15%), Positives = 43/159 (27%), Gaps = 35/159 (22%)
Query: 161 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATL 220
+ + ++ Q P LT G + +E
Sbjct: 4 GSMDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE--------------- 48
Query: 221 AVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVT-- 278
+ I + +AI+ + E L IDP + + GN Y +T
Sbjct: 49 ---------LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPD 99
Query: 279 ---------DAIQDYIRAITIRPTMAEAHANLASAYKDS 308
A Q + +A+ +P +L K
Sbjct: 100 ETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP 138
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 2e-06
Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 21/106 (19%)
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR----------VTDAIQDYIRAITIRP 292
+ + +PL AD L G E+ + + +AI + A+ I P
Sbjct: 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP 77
Query: 293 TMAEAHANLASAYKDSG-----------HVEAAIKSYKQALLLRPD 327
EA + +AY + + A + ++QA+ +PD
Sbjct: 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 9e-10
Identities = 34/200 (17%), Positives = 58/200 (29%), Gaps = 25/200 (12%)
Query: 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ---EAIMC 114
A LA ++ SGD +A + ++A DA L + +A
Sbjct: 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIRNPQQADYPQARQL 75
Query: 115 YQRAVQTRPNAIAFGNLASTYYERGQA-----DMAILYYKQAI--GCDPRFLEAYNNLGN 167
++AV+ + LA QA AI + A ++A LG
Sbjct: 76 AEKAVE-AGSKSGEIVLA-RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGL 133
Query: 168 ALKDVGR-----VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA---- 218
G +A + + S A G ++ + + KA
Sbjct: 134 IYAS-GVHGPEDDVKASEYFKGS-SSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWL 191
Query: 219 TLAVTTGLSAPFNNLAVIYK 238
++ G I K
Sbjct: 192 NVSCLEGFDTGCEEFDRISK 211
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 1e-09
Identities = 32/157 (20%), Positives = 51/157 (32%), Gaps = 24/157 (15%)
Query: 164 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 223
GN+L +++EA+Q Y + + M Y LAV
Sbjct: 184 MDGNSLFKEEKLEEAMQQYEMAI--------------AYMGDDFMFQLYGKYQDMALAVK 229
Query: 224 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQD 283
N+A + Y +AI N VL + L RG E+G++ A D
Sbjct: 230 NPC---HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDD 286
Query: 284 YIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 320
+ +A P L + + K+ Q
Sbjct: 287 FRKAQKYAPDDKAIRRELRA-------LAEQEKALYQ 316
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 22/147 (14%), Positives = 49/147 (33%), Gaps = 16/147 (10%)
Query: 56 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCY 115
A + L A+Q Y+ A+ Y+ +++ G Q+ +
Sbjct: 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIA--------YMGDDFMFQLYGKYQDMALAV 228
Query: 116 QRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV 175
+ N+A+ + + D AI + + + + +A G A ++G++
Sbjct: 229 KNPCHL--------NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQM 280
Query: 176 DEAIQCYNQCLSLQPSHPQALTNLGNI 202
D A + + P L +
Sbjct: 281 DSARDDFRKAQKYAPDDKAIRRELRAL 307
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 1e-08
Identities = 19/136 (13%), Positives = 39/136 (28%)
Query: 130 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 189
S ++G+ A+ + + + L + + + A +
Sbjct: 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY 70
Query: 190 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 249
+ + + LA LAV Y Q G +A+
Sbjct: 71 QDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALEL 130
Query: 250 YNEVLRIDPLAADGLV 265
+L+++ A DG V
Sbjct: 131 LWNILKVNLGAQDGEV 146
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 2e-07
Identities = 16/126 (12%), Positives = 40/126 (31%), Gaps = 2/126 (1%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+++G +A + D + + + A L + ++
Sbjct: 17 LQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQE-LLATIPLEYQDNSY 75
Query: 61 WSNLAGL-FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 119
S +A L + + L+ ++ + P + L Y +G +EA+ +
Sbjct: 76 KSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNIL 135
Query: 120 QTRPNA 125
+ A
Sbjct: 136 KVNLGA 141
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 2e-07
Identities = 17/131 (12%), Positives = 38/131 (29%), Gaps = 1/131 (0%)
Query: 63 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 122
++ G+ +AL + + D L + + A
Sbjct: 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY 70
Query: 123 PNAIAFGNLAST-YYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 181
+ +A +++ + +Q + +P E L VGR +EA++
Sbjct: 71 QDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALEL 130
Query: 182 YNQCLSLQPSH 192
L +
Sbjct: 131 LWNILKVNLGA 141
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 2e-05
Identities = 18/166 (10%), Positives = 42/166 (25%), Gaps = 3/166 (1%)
Query: 20 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ 79
N + + + QG +A + + A +E+ A +
Sbjct: 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQE 61
Query: 80 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYER 138
L + ++ + P N LA Y +
Sbjct: 62 LLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQV 121
Query: 139 GQADMAILYYKQAIGCDPRFLE--AYNNLGNALKDVGRVDEAIQCY 182
G+ + A+ + + + + L +G+ + Y
Sbjct: 122 GRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 7e-04
Identities = 17/123 (13%), Positives = 33/123 (26%), Gaps = 3/123 (2%)
Query: 239 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 298
QQG +A A++ + D + + + E + A + +
Sbjct: 18 QQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKS 77
Query: 299 ANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 358
+K +Q L PD E C L + + I
Sbjct: 78 LIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYN---QVGRDEEALELLWNI 134
Query: 359 IRR 361
++
Sbjct: 135 LKV 137
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 20/96 (20%), Positives = 39/96 (40%)
Query: 29 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 88
N + A Y +A+ + P+ AI + N + ++ + AL A++L
Sbjct: 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD 70
Query: 89 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
+ Y ALG + A+ Y+ V+ +P+
Sbjct: 71 KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 106
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 6e-08
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 9/119 (7%)
Query: 82 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 140
K A +LK N Y + AI Y +A++ P NAI +GN + Y
Sbjct: 4 KRAEELK--------TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC 55
Query: 141 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 199
A+ +AI D ++++ Y + +G+ A++ Y + ++P A
Sbjct: 56 YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 114
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 24/136 (17%)
Query: 234 AVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 286
A K Q N Y +AI Y++ + ++P A NR Y A+ D R
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 287 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWE 346
AI + + + A++ G AA++ Y+ + ++P +A
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA--------------- 110
Query: 347 DRDRMFSEVEGIIRRQ 362
+ E I++++
Sbjct: 111 --KMKYQECNKIVKQK 124
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 117
A A + ++ D A+++Y +A++L P+ Y N Y A+ R
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 118 AVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI 152
A++ YY R ++MA+ ++ A+
Sbjct: 66 AIELDK------KYIKGYYRRAASNMALGKFRAAL 94
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 19/113 (16%), Positives = 41/113 (36%)
Query: 194 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV 253
+ L N Y + A +Y + + + + N ++ Y + Y A+
Sbjct: 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 66
Query: 254 LRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 306
+ +D G R + +G+ A++DY + ++P +A K
Sbjct: 67 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 119
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 4e-08
Identities = 28/178 (15%), Positives = 56/178 (31%), Gaps = 26/178 (14%)
Query: 143 MAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNI 202
A ++ G G+ +A+ Y + +S
Sbjct: 252 KAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--------------- 296
Query: 203 YMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD 262
++E + KA+ + F NLA+ Y + Y A+ C ++ L +D
Sbjct: 297 WLEM-EYGLSEKESKASESFLLAA---FLNLAMCYLKLREYTKAVECCDKALGLDSANEK 352
Query: 263 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 320
GL RG + A D+ + + + P A ++ + K + +
Sbjct: 353 GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISM-------CQKKAKEHNE 403
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 5e-05
Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 16/128 (12%)
Query: 88 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV-------------QTRPNAI---AFGNL 131
K G VY G +A++ Y + V + AF NL
Sbjct: 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL 323
Query: 132 ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 191
A Y + + A+ +A+G D + G A + + A + + L + P
Sbjct: 324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383
Query: 192 HPQALTNL 199
+ A +
Sbjct: 384 NKAARLQI 391
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 53.1 bits (126), Expect = 3e-07
Identities = 20/89 (22%), Positives = 38/89 (42%)
Query: 29 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 88
+LG++ + + +A S Y A ++ P+ ++ LA L GD + YY ++ +K
Sbjct: 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK 216
Query: 89 PTFPDAYLNLGNVYKALGMPQEAIMCYQR 117
FP A NL ++ +
Sbjct: 217 FPFPAASTNLQKALSKALESRDEVKTKWG 245
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 49.6 bits (117), Expect = 3e-06
Identities = 35/229 (15%), Positives = 78/229 (34%), Gaps = 25/229 (10%)
Query: 147 YYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI--QCYNQCLSLQPSHPQALTNLGNIYM 204
Y++ + D + V++ + + ++ + N +
Sbjct: 39 LYQKMLVTDLEYALDKK-----------VEQDLWNHAFKNQITTLQGQAKNRANPNRSEV 87
Query: 205 EWNM---LPAAASYYKATLAVTT---GLSAP----FNNLAVIYKQQGNYADAISCYNEVL 254
+ N+ L AA+ +Y L + P + L +I +Q + + + +
Sbjct: 88 QANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSC 147
Query: 255 RIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAA 314
+ LV+ G+ + + + A Y A + P+ + + LA G
Sbjct: 148 SY--ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTT 205
Query: 315 IKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQV 363
I Y +++ ++ FP A+ NL L D + V I+ +
Sbjct: 206 IFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFI 254
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 49.2 bits (116), Expect = 4e-06
Identities = 23/127 (18%), Positives = 35/127 (27%), Gaps = 1/127 (0%)
Query: 78 LQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYE 137
LQ + LG + + + +L
Sbjct: 106 LQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLV-HLGDIARY 164
Query: 138 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALT 197
R Q A YY+ A P + YN L G I Y + ++++ P A T
Sbjct: 165 RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAST 224
Query: 198 NLGNIYM 204
NL
Sbjct: 225 NLQKALS 231
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 48.0 bits (113), Expect = 9e-06
Identities = 41/251 (16%), Positives = 74/251 (29%), Gaps = 45/251 (17%)
Query: 128 FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 187
F AS +Y + ++ ++ D + LG ++ + S
Sbjct: 94 FLEAASGFYTQLLQELCTVF-----NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS 148
Query: 188 LQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAI 247
H L +LG+I N A SYY+ + P+N LA++ +G++ I
Sbjct: 149 YICQH--CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI 206
Query: 248 SCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD 307
Y R+I ++ A NL A
Sbjct: 207 FY----------------------------------YCRSIAVKFPFPAASTNLQKALSK 232
Query: 308 SGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSV 367
+ +K+ DF +A + S E + ++E + +
Sbjct: 233 ALESRDEVKTKWG----VSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQKA 288
Query: 368 LPSVQPFHAIA 378
S Q H
Sbjct: 289 FNSQQLVHVTV 299
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 43.8 bits (102), Expect = 2e-04
Identities = 14/90 (15%), Positives = 32/90 (35%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 61
+ + ++A R A L P ++ L L ++G Y ++ ++ F A
Sbjct: 164 YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAS 223
Query: 62 SNLAGLFMESGDLNRALQYYKEAVKLKPTF 91
+NL ++ + ++ F
Sbjct: 224 TNLQKALSKALESRDEVKTKWGVSDFIKAF 253
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 4e-07
Identities = 22/131 (16%), Positives = 43/131 (32%), Gaps = 3/131 (2%)
Query: 28 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL 87
+ N + +G +Q+A +EA++ P A S+ L GD RA + +++KL
Sbjct: 2 TQWKNALS-EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60
Query: 88 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRA--VQTRPNAIAFGNLASTYYERGQADMAI 145
P + L ++ KA ++ A + + +
Sbjct: 61 FPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS 120
Query: 146 LYYKQAIGCDP 156
Q
Sbjct: 121 ELALQIEELRQ 131
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 7e-05
Identities = 15/67 (22%), Positives = 28/67 (41%)
Query: 275 GRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCN 334
G++ A++ I AI P A ++ G E A + Q++ L P++
Sbjct: 11 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ 70
Query: 335 LLHTLQC 341
L H ++
Sbjct: 71 LRHLVKA 77
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 9e-07
Identities = 32/162 (19%), Positives = 51/162 (31%), Gaps = 25/162 (15%)
Query: 159 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 218
E N+GN + AI+ Y + L Y+E + A +
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLR---------------YVEGSRAAAEDADGAK 267
Query: 219 TLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVT 278
V N+ + ++ A+ E L IDP L R ++ +
Sbjct: 268 LQPVALSC---VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYD 324
Query: 279 DAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 320
A+ D +A I P A L V+ IK+ K
Sbjct: 325 QALADLKKAQEIAPEDKAIQAELLK-------VKQKIKAQKD 359
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 2e-06
Identities = 17/163 (10%), Positives = 44/163 (26%), Gaps = 13/163 (7%)
Query: 67 LFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI 126
+++ ++ + L + + ++ + + N
Sbjct: 97 KVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156
Query: 127 AFGNLASTYYERGQADMAILYYKQAIGC-------DPRFLEAYNNLGNALKDVGRVDEAI 179
+A+ Y E G I ++Q + + ++ N AL R +E++
Sbjct: 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL 216
Query: 180 QCYNQCLSLQPSH------PQALTNLGNIYMEWNMLPAAASYY 216
N+ + + Q G + A
Sbjct: 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDA 259
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 3e-06
Identities = 18/139 (12%), Positives = 46/139 (33%), Gaps = 13/139 (9%)
Query: 27 HSNLGNLMKAQGLVQEAYSCYLEALRIQPT------FAIAWSNLAGLFMESGDLNRALQY 80
+ + + + + L Q T + +A ++ E+G L + +
Sbjct: 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDL 177
Query: 81 YKEAVKLKPTFPD-------AYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAS 133
+++ +K D N +E++ +A++ + +
Sbjct: 178 FEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237
Query: 134 TYYERGQADMAILYYKQAI 152
YY+RG+ + Y + I
Sbjct: 238 LYYQRGECLRKLEYEEAEI 256
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 2e-05
Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 14/109 (12%)
Query: 230 FNNLAVIYKQQGNYADAISCYNEVLRI-------DPLAADGLVNRGNTYKEIGRVTDAIQ 282
N +A IY + G I + ++L+ + N R +++
Sbjct: 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY 217
Query: 283 DYIRAITI------RPTMAEAHANLASAYKDSGHVEAAIKSY-KQALLL 324
+AI I + + + + + EA I+ K+A
Sbjct: 218 QVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 8e-06
Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 9/107 (8%)
Query: 232 NLAVIYKQQGNYADAISCYNEVLRI---DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAI 288
N+A + G Y DA + L + + L G +Y A + +
Sbjct: 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLV 66
Query: 289 TIRPT---MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 332
+ PT A L + G A ++ +Q + +P +
Sbjct: 67 SRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQ---VATQYPGSD 110
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 9e-06
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 63 NLAGLFMESGDLNRALQYYKEAVKLKPT---FPDAYLNLGNVYKALGMPQEAIMCYQRAV 119
N+A +++G + A Q + ++L P P+A LG Y A Q A ++ V
Sbjct: 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLV 66
Query: 120 QTRPN----AIAFGNLASTYYERGQADMAILYYKQAI 152
P A L + Y G+ A +Q
Sbjct: 67 SRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVA 103
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 4/82 (4%)
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPT---FPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
L + + + A +++ V PT L LG G EA Q+
Sbjct: 45 LGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104
Query: 121 TRPNAIAFGNLASTYYERGQAD 142
P + A +A + +
Sbjct: 105 QYPGSDA-ARVAQERLQSIRLG 125
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 35/310 (11%), Positives = 79/310 (25%), Gaps = 60/310 (19%)
Query: 28 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL 87
SN + + Y + L + W A QY +++ KL
Sbjct: 20 SNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIW-------------YEAAQYLEQSSKL 66
Query: 88 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYE--RGQADMAI 145
D A EA Y+RA+ T A YE R + +
Sbjct: 67 LAEKGDMNN-------AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH 119
Query: 146 LYYKQAIGCDPR-FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 204
Y + + + Y + + + + + +Y+
Sbjct: 120 SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH-------VYV 172
Query: 205 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL 264
++ Y + + A + L+ + +
Sbjct: 173 TAALM--------------------------EYYCSKDKSVAFKIFELGLKKYGDIPEYV 206
Query: 265 VNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAY----KDSGHVEAAIKSYKQ 320
+ + + + + R +T E + + + + G + + +K K+
Sbjct: 207 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266
Query: 321 ALLLRPDFPE 330
+ E
Sbjct: 267 RFTAFREEYE 276
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 3e-04
Identities = 12/195 (6%), Positives = 42/195 (21%), Gaps = 10/195 (5%)
Query: 31 GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP- 89
G + + + + L + + + G +A + + +++
Sbjct: 186 GMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDG 245
Query: 90 -----TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMA 144
+ V ++ + N + ++ ++
Sbjct: 246 MFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF 305
Query: 145 ILYYKQAIG--CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNI 202
+ + P + G ++ L P
Sbjct: 306 RKLFIELGNEGVGPHVFIYCAFI--EYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363
Query: 203 YMEWNMLPAAASYYK 217
+ A + +K
Sbjct: 364 LLRIGDEENARALFK 378
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 811 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-51 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-46 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-39 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-29 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-12 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-11 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-38 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 7e-37 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 4e-17 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 7e-31 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 2e-22 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 7e-15 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 5e-06 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-22 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 6e-20 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 5e-11 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-09 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 4e-22 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 5e-18 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 7e-18 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 3e-16 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 5e-07 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 2e-05 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 3e-20 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 4e-19 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 1e-09 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 7e-20 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 9e-15 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 4e-09 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 4e-08 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 7e-05 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 2e-04 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 2e-04 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 4e-19 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 4e-17 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 1e-16 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 1e-16 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 1e-14 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 1e-13 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 0.002 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 2e-18 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 4e-14 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 2e-13 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 5e-12 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 7e-18 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 1e-17 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 8e-16 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 4e-13 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 4e-12 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 2e-17 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 6e-16 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 4e-15 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 6e-15 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 3e-12 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 4e-10 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 6e-16 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-13 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-12 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-12 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-07 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-04 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 9e-14 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 1e-09 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 2e-09 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 2e-09 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.004 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 7e-12 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 7e-12 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 1e-10 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 2e-09 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 3e-09 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 7e-06 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 1e-11 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 4e-10 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 1e-09 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 3e-09 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 6e-08 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 3e-10 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 8e-10 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 7e-09 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 2e-07 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 6e-07 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 0.001 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 1e-09 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-09 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-08 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-07 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 6e-07 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 4e-06 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-06 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 8e-09 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 8e-09 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 2e-08 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 2e-08 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 6e-08 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 2e-07 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 3e-07 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 5e-08 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 1e-07 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 5e-08 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 2e-07 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 3e-07 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 1e-04 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 5e-04 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 7e-04 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 7e-08 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 7e-08 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 3e-07 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 4e-06 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 2e-05 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 3e-06 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 5e-06 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 4e-05 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 0.001 | |
| d1zu2a1 | 145 | a.118.8.1 (A:1-145) Mitochondrial import receptor | 4e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 183 bits (464), Expect = 1e-51
Identities = 111/375 (29%), Positives = 183/375 (48%), Gaps = 35/375 (9%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+ G A + C Q P L ++ + + A++ P A A
Sbjct: 10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEA 69
Query: 61 WSNLAGLF----------------------------------MESGDLNRALQYYKEAVK 86
+SNL ++ + +GD+ A+Q Y A++
Sbjct: 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129
Query: 87 LKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAI 145
P +LGN+ KALG +EA CY +A++T+PN A+A+ NL + +G+ +AI
Sbjct: 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189
Query: 146 LYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME 205
++++A+ DP FL+AY NLGN LK+ D A+ Y + LSL P+H NL +Y E
Sbjct: 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249
Query: 206 WNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLV 265
++ A Y+ + + + NLA K++G+ A+A CYN LR+ P AD L
Sbjct: 250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309
Query: 266 NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 325
N N +E G + +A++ Y +A+ + P A AH+NLAS + G ++ A+ YK+A+ +
Sbjct: 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369
Query: 326 PDFPEATCNLLHTLQ 340
P F +A N+ +TL+
Sbjct: 370 PTFADAYSNMGNTLK 384
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 168 bits (425), Expect = 2e-46
Identities = 98/344 (28%), Positives = 152/344 (44%), Gaps = 35/344 (10%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNL--------------------------- 33
+ RL+ +A A+ NPLL +A+SNLGN+
Sbjct: 44 FQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG 103
Query: 34 -------MKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVK 86
+ A G ++ A Y+ AL+ P S+L L G L A Y +A++
Sbjct: 104 YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163
Query: 87 LKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAI 145
+P F A+ NLG V+ A G AI +++AV PN A+ NL + E D A+
Sbjct: 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 223
Query: 146 LYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME 205
Y +A+ P + NL + G +D AI Y + + LQP P A NL N E
Sbjct: 224 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE 283
Query: 206 WNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLV 265
+ A Y L + + NNLA I ++QGN +A+ Y + L + P A
Sbjct: 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343
Query: 266 NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 309
N + ++ G++ +A+ Y AI I PT A+A++N+ + K+
Sbjct: 344 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 147 bits (372), Expect = 3e-39
Identities = 87/328 (26%), Positives = 149/328 (45%), Gaps = 1/328 (0%)
Query: 29 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 88
L + G + A ++ R +P L+ + + L+R+ + A+K
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 89 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAIL-Y 147
P +AY NLGNVYK G QEAI Y+ A++ +P+ I + +
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 148 YKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 207
Y A+ +P ++LGN LK +GR++EA CY + + QP+ A +NLG ++
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183
Query: 208 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNR 267
+ A +++ + + + NL + K+ + A++ Y L + P A N
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243
Query: 268 GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 327
Y E G + AI Y RAI ++P +A+ NLA+A K+ G V A Y AL L P
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303
Query: 328 FPEATCNLLHTLQCVCSWEDRDRMFSEV 355
++ NL + + + E+ R++ +
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKA 331
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 119 bits (298), Expect = 2e-29
Identities = 72/287 (25%), Positives = 122/287 (42%), Gaps = 35/287 (12%)
Query: 96 LNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGC 154
+ L + G + A + + P N L+S +++ + D + + AI
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 155 DPRFLEAYNNLGNALKDVGRVDEAIQ---------------------------------- 180
+P EAY+NLGN K+ G++ EAI+
Sbjct: 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 181 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 240
Y L P ++LGN+ L A + Y + + ++NL ++ Q
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182
Query: 241 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN 300
G AI + + + +DP D +N GN KE A+ Y+RA+++ P A H N
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242
Query: 301 LASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWED 347
LA Y + G ++ AI +Y++A+ L+P FP+A CNL + L+ S +
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE 289
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.0 bits (162), Expect = 3e-12
Identities = 31/73 (42%), Positives = 44/73 (60%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+G + EA + R+AL + P AHSNL ++++ QG +QEA Y EA+RI PTFA A
Sbjct: 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375
Query: 61 WSNLAGLFMESGD 73
+SN+ E D
Sbjct: 376 YSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.9 bits (154), Expect = 3e-11
Identities = 12/90 (13%), Positives = 29/90 (32%)
Query: 263 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 322
G + + + G A + ++ P L+S + ++ + A+
Sbjct: 1 GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60
Query: 323 LLRPDFPEATCNLLHTLQCVCSWEDRDRMF 352
P EA NL + + ++ +
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 147 bits (372), Expect = 3e-38
Identities = 41/283 (14%), Positives = 74/283 (26%), Gaps = 43/283 (15%)
Query: 7 NEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAG 66
++AQ RQA L + D+ + ++ +Q+ Y + L +A+
Sbjct: 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQ---KMLVTDLEYALDKKVEQD 59
Query: 67 LFME-----------------------------------SGDLNRALQYYKEAVKLKPTF 91
L+ SG + LQ +
Sbjct: 60 LWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPC 119
Query: 92 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQA 151
LG + + + +L R Q A YY+ A
Sbjct: 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-QHCLVHLGDIARYRNQTSQAESYYRHA 178
Query: 152 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 211
P + YN L G I Y + ++++ P A TNL +
Sbjct: 179 AQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL---SKALE 235
Query: 212 AASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVL 254
+ K V+ + A F + ++
Sbjct: 236 SRDEVKTKWGVSDFIKA-FIKFHGHVYLSKSLEKLSPLREKLE 277
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 143 bits (361), Expect = 7e-37
Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 38/285 (13%)
Query: 77 ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYY 136
+ QY ++A LK D+ L V+ + Q+ YQ+ + T Y
Sbjct: 5 SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE----------YA 51
Query: 137 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 196
+ + + + A+ N L+ + +L A
Sbjct: 52 LDKKVEQDL------------WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAAS 99
Query: 197 TNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 256
V + L +I +Q + + + +
Sbjct: 100 GFYTQ----------LLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY 149
Query: 257 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 316
LV+ G+ + + + A Y A + P+ + + LA G I
Sbjct: 150 IC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIF 207
Query: 317 SYKQALLLRPDFPEATCNLLHTL-QCVCSWEDRDRMFSEVEGIIR 360
Y +++ ++ FP A+ NL L + + S ++ + + I
Sbjct: 208 YYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKA 252
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.9 bits (204), Expect = 4e-17
Identities = 23/142 (16%), Positives = 49/142 (34%), Gaps = 5/142 (3%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
++ + + + + +LG++ + + +A S Y A ++ P+
Sbjct: 131 NKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQP 188
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
++ LA L GD + YY ++ +K FP A NL ++ + +
Sbjct: 189 YNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV---KTKWG 245
Query: 121 TRPNAIAFGNLASTYYERGQAD 142
AF Y +
Sbjct: 246 VSDFIKAFIKFHGHVYLSKSLE 267
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 122 bits (305), Expect = 7e-31
Identities = 26/312 (8%), Positives = 76/312 (24%), Gaps = 18/312 (5%)
Query: 8 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGL 67
+A + L A + +A L + + L P FA W+ +
Sbjct: 13 QAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREV 72
Query: 68 FM----------ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG--MPQEAIMCY 115
+ + L + + +++ P + + + L +
Sbjct: 73 LQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELC 132
Query: 116 QRAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 173
R ++ + + I + +++ L +
Sbjct: 133 ARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192
Query: 174 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL 233
++ ++ + + N +A +Y L
Sbjct: 193 PQPDSGPQGRLPENVLLKELELVQNAFFTDPN----DQSAWFYHRWLLGRAEPLFRCELS 248
Query: 234 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 293
+ ++ E+ + ++ + + +Q + + P
Sbjct: 249 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 308
Query: 294 MAEAHANLASAY 305
A +L S +
Sbjct: 309 RAAYLDDLRSKF 320
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 97.0 bits (240), Expect = 2e-22
Identities = 20/211 (9%), Positives = 54/211 (25%), Gaps = 6/211 (2%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNL-GNLMKAQGLVQEAYSCYLEALRIQPTFAI 59
+ + + C + L + +A E + + +
Sbjct: 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 179
Query: 60 AWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 119
+W + L + + + + + N ++ Y R +
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF----TDPNDQSAWFYHRWL 235
Query: 120 QTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEA 178
R + ++ + L L AL + E
Sbjct: 236 LGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET 295
Query: 179 IQCYNQCLSLQPSHPQALTNLGNIYMEWNML 209
+Q ++ ++ P L +L + ++ N +
Sbjct: 296 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSV 326
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 74.6 bits (182), Expect = 7e-15
Identities = 27/271 (9%), Positives = 66/271 (24%), Gaps = 17/271 (6%)
Query: 99 GNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRF 158
G + Q +R + + A + + + Q +G +P F
Sbjct: 3 GRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDF 62
Query: 159 LEAYNNLGNALK----------DVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNM 208
+N L+ V + CL + P + +
Sbjct: 63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122
Query: 209 L---PAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLV 265
+ A V + A+ ++ + ++ +
Sbjct: 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 182
Query: 266 NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 325
R ++ D+ + + L + + + Y + LL R
Sbjct: 183 YRSCLLPQLHPQPDSGPQGR----LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238
Query: 326 PDFPEATCNLLHTLQCVCSWEDRDRMFSEVE 356
+ + + S + + E+E
Sbjct: 239 AEPLFRCELSVEKSTVLQSELESCKELQELE 269
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.9 bits (110), Expect = 5e-06
Identities = 8/76 (10%), Positives = 21/76 (27%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 61
E+ + ++ N + L + +E + + P A
Sbjct: 254 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 313
Query: 62 SNLAGLFMESGDLNRA 77
+L F+ + +
Sbjct: 314 DDLRSKFLLENSVLKM 329
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.2 bits (240), Expect = 1e-22
Identities = 43/289 (14%), Positives = 87/289 (30%), Gaps = 29/289 (10%)
Query: 63 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 122
++ GDL A+ ++ AV+ P +A+ LG AI +R ++ +
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83
Query: 123 PNAIAFGNLASTYYERG-QADMAILYYKQAIGCDPRFLEAYNNLGNA------------- 168
P+ + + A + + P +
Sbjct: 84 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143
Query: 169 --LKDVGRVDEAIQCYNQCLSLQPS--HPQALTNLGNIYMEWNMLPAAASYYKATLAVTT 224
L E + + + L P+ P LG ++ A + A L+V
Sbjct: 144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 203
Query: 225 GLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 284
+N L +A++ Y L + P N G + +G +A++ +
Sbjct: 204 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 263
Query: 285 IRAITIRPTMAEAHA-----------NLASAYKDSGHVEAAIKSYKQAL 322
+ A+ ++ L A G +A + + L
Sbjct: 264 LEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 312
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.5 bits (220), Expect = 6e-20
Identities = 46/277 (16%), Positives = 94/277 (33%), Gaps = 22/277 (7%)
Query: 81 YKEAVKLKPTFP----DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTY 135
Y + + + P G G A++ ++ AVQ P + A+ L +T
Sbjct: 4 YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQ 63
Query: 136 YERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQA 195
E Q +AI ++ + P A L + + +A + L P++
Sbjct: 64 AENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL 123
Query: 196 LTNLG---------------NIYMEWNMLPAAASYYKATLAV--TTGLSAPFNNLAVIYK 238
+T + ++ + A + + T+ L V++
Sbjct: 124 VTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 183
Query: 239 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 298
G Y A+ C+ L + P G T + +A+ Y RA+ ++P +
Sbjct: 184 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243
Query: 299 ANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
NL + + G A++ + +AL ++
Sbjct: 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 280
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.5 bits (150), Expect = 5e-11
Identities = 36/189 (19%), Positives = 64/189 (33%), Gaps = 24/189 (12%)
Query: 1 MRKGRLNEAAQCCRQALAL--NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA 58
+ E + A+ L + D LG L G +A C+ AL ++P
Sbjct: 147 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY 206
Query: 59 IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRA 118
+ W+ L A+ Y+ A++L+P + + NLG LG +EA+ + A
Sbjct: 207 LLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 266
Query: 119 VQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEA 178
+ + + E ++ L AL +G+ D
Sbjct: 267 LNMQRKSRGPRGEGGAMSE----------------------NIWSTLRLALSMLGQSDAY 304
Query: 179 IQCYNQCLS 187
+ LS
Sbjct: 305 GAADARDLS 313
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (137), Expect = 2e-09
Identities = 18/120 (15%), Positives = 39/120 (32%)
Query: 232 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR 291
+ Q+G+ +A+ + ++ DP + G T E + AI R + ++
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83
Query: 292 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRM 351
P A LA ++ + A + + L P + + +
Sbjct: 84 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 95.8 bits (237), Expect = 4e-22
Identities = 37/273 (13%), Positives = 84/273 (30%), Gaps = 12/273 (4%)
Query: 16 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG-DL 74
+ + D + +++ + A+ +A+ + W L DL
Sbjct: 35 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94
Query: 75 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLAS 133
+ + Y ++ +P + + + + L P + + + N A+ +
Sbjct: 95 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 154
Query: 134 TYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD------EAIQCYNQCLS 187
E D + Y Q + D R +N + + + +Q + +
Sbjct: 155 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 214
Query: 188 LQPSHPQALTNLGNIYMEWNMLPAAASYYKA-TLAVTTGLSAPFNNLAVIYKQ--QGNYA 244
L P + A L I + + + L + L IY+ +
Sbjct: 215 LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 274
Query: 245 DAISCYNEVLRIDPLAADGL-VNRGNTYKEIGR 276
+ N+ L + + A R ++ IGR
Sbjct: 275 NKEDILNKALELCEILAKEKDTIRKEYWRYIGR 307
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.5 bits (205), Expect = 5e-18
Identities = 26/261 (9%), Positives = 74/261 (28%), Gaps = 8/261 (3%)
Query: 151 AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN-ML 209
I +F + Y+ L+ R + A + + L ++ + L
Sbjct: 35 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94
Query: 210 PAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGN 269
+Y A + +++ V+ + + + + ++L D +R
Sbjct: 95 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 154
Query: 270 TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG------HVEAAIKSYKQALL 323
+E + +Q + + ++ +E ++ + +
Sbjct: 155 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 214
Query: 324 LRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDP 383
L P N L + + +++ + + ++ + +
Sbjct: 215 LVPHNES-AWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 273
Query: 384 MLALEISRKYASHCSIIASRF 404
+I K C I+A
Sbjct: 274 DNKEDILNKALELCEILAKEK 294
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.1 bits (204), Expect = 7e-18
Identities = 27/276 (9%), Positives = 80/276 (28%), Gaps = 11/276 (3%)
Query: 41 QEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGN 100
Q + + F + + RA + ++A++L +
Sbjct: 26 QNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRV 85
Query: 101 VYKALG-MPQEAIMCYQRAVQTRPNAIAFG-NLASTYYERGQADMAILYYKQAIGCDPRF 158
+ K+L E + ++ +P + + + + D +
Sbjct: 86 LLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN 145
Query: 159 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 218
A+ + +++ D +Q +Q L + + A +
Sbjct: 146 YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLERE 205
Query: 219 TLAVTTGLSAPFNNLAVIYKQQGNYAD-----AISCYNEVLRIDPLAADG--LVNRGNTY 271
+ +N + +G D + N++L + P + + + Y
Sbjct: 206 VQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265
Query: 272 KEI--GRVTDAIQDYIRAITIRPTMAEAHANLASAY 305
+++ + + +A+ + +A+ + Y
Sbjct: 266 EDMLENQCDNKEDILNKALELCEILAKEKDTIRKEY 301
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.5 bits (192), Expect = 3e-16
Identities = 41/214 (19%), Positives = 74/214 (34%), Gaps = 11/214 (5%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA-QGLVQEAYSCYLEALRIQPTFAIA 60
R R A + R A+ LN L+K+ Q + E + + QP
Sbjct: 55 RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 114
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
W + L D ++ L++ + + A+ + V + + + + ++
Sbjct: 115 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK 174
Query: 121 TRP-NAIAFGNLASTYYERGQADM------AILYYKQAIGCDPRFLEAYNNLGNALKDVG 173
N + + + Y + I P A+N L L+D G
Sbjct: 175 EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG 234
Query: 174 RVDEAIQCYNQCLSLQPSH--PQALTNLGNIYME 205
+ + NQ L LQPSH P + L +IY +
Sbjct: 235 -LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (118), Expect = 5e-07
Identities = 22/174 (12%), Positives = 51/174 (29%), Gaps = 12/174 (6%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
++ + L + A + +++ L + L+
Sbjct: 123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSV 182
Query: 61 WSNLAGLFMESGDLN------RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMC 114
W+ + + N R +QY E +KL P A+ L + + G+ +
Sbjct: 183 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGL-SKYPNL 241
Query: 115 YQRAVQTRPN---AIAFGNLASTYYE--RGQADMAILYYKQAIGCDPRFLEAYN 163
+ + +P+ L Y + Q D +A+ + +
Sbjct: 242 LNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD 295
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.3 bits (106), Expect = 2e-05
Identities = 7/62 (11%), Positives = 17/62 (27%)
Query: 279 DAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHT 338
+ + + I + + + + E A K + A+ L
Sbjct: 27 NDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVL 86
Query: 339 LQ 340
L+
Sbjct: 87 LK 88
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 91.1 bits (224), Expect = 3e-20
Identities = 47/360 (13%), Positives = 95/360 (26%), Gaps = 51/360 (14%)
Query: 15 QALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT-----FAIAWSNLAGLFM 69
+ + + + + ++ + G EA AL P +A S L +
Sbjct: 3 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62
Query: 70 ESGDLNRALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
G+L R+L ++ ++ + + + A G Q A ++A Q
Sbjct: 63 CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 122
Query: 124 ---------NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE------------AY 162
+ A + + D A + I +
Sbjct: 123 EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 182
Query: 163 NNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV 222
G+ +++ A + AAA++ + T
Sbjct: 183 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 242
Query: 223 TTG----LSAPFNNLAVIYKQQGNYADAISCYNEVLRI------DPLAADGLVNRGNTYK 272
L + N+A G + A E+ L+ Y
Sbjct: 243 EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 302
Query: 273 EIGRVTDAIQDYIRAITIRPTM---------AEAHANLASAYKDSGHVEAAIKSYKQALL 323
+ GR +DA + + A+ + EA A + + Q +L
Sbjct: 303 QAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRIL 362
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 88.0 bits (216), Expect = 4e-19
Identities = 44/319 (13%), Positives = 81/319 (25%), Gaps = 42/319 (13%)
Query: 48 LEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD-----AYLNLGNVY 102
++ +R A + A + + G+ + A + K A++ P A LG V
Sbjct: 2 IKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVL 61
Query: 103 KALGMPQEAIMCYQRAVQ-------TRPNAIAFGNLASTYYERGQADMAILYYKQAIGCD 155
G ++ Q+ Q + + + +G A ++A
Sbjct: 62 HCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 121
Query: 156 PRFL--------EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS-----HPQALTNLGNI 202
L R+DEA + + S Q L L
Sbjct: 122 NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181
Query: 203 YMEWNMLPAAASY-------YKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLR 255
+ L A S + +S + ++ G+ A A + +
Sbjct: 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 241
Query: 256 ID----PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI------RPTMAEAHANLASAY 305
+ N +G A + L Y
Sbjct: 242 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 301
Query: 306 KDSGHVEAAIKSYKQALLL 324
+G A + AL L
Sbjct: 302 WQAGRKSDAQRVLLDALKL 320
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 58.8 bits (140), Expect = 1e-09
Identities = 27/235 (11%), Positives = 54/235 (22%), Gaps = 32/235 (13%)
Query: 10 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 69
Q L P+ L+ A + EA + + + ++ +
Sbjct: 119 QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178
Query: 70 ------------ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 117
LNR +A ++ G A +
Sbjct: 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRH 238
Query: 118 AVQTRPN-----AIAFGNLASTYYERGQADMAILYYKQAI------GCDPRFLEAYNNLG 166
+ + N+A G+ + A + ++ L
Sbjct: 239 TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 298
Query: 167 NALKDVGRVDEAIQCYNQCLSLQPSH---------PQALTNLGNIYMEWNMLPAA 212
GR +A + L L +A+ ++ N LP
Sbjct: 299 QLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPEL 353
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 87.9 bits (216), Expect = 7e-20
Identities = 38/250 (15%), Positives = 74/250 (29%), Gaps = 7/250 (2%)
Query: 98 LGNVYKALGMPQEAIMCYQRAVQTRP-----NAIAFGNLASTYYERGQADMAILYYKQAI 152
L + + + ++ + +R A Y G +A + QA+
Sbjct: 5 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
Query: 153 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAA 212
P E +N LG L G D A + ++ L L P++ A N G A
Sbjct: 65 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124
Query: 213 ASYYKATLAVTTGLSAPFNNLAVIYKQQGN--YADAISCYNEVLRIDPLAADGLVNRGNT 270
A L + ++ + + + E + + +
Sbjct: 125 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN 184
Query: 271 YKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 330
E + D ++ ++E + L Y G +++A +K A+
Sbjct: 185 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 244
Query: 331 ATCNLLHTLQ 340
L L
Sbjct: 245 EHRYALLELS 254
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 72.9 bits (177), Expect = 9e-15
Identities = 38/219 (17%), Positives = 73/219 (33%), Gaps = 3/219 (1%)
Query: 6 LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA 65
L Q + G L + GL A + + +AL I+P ++ L
Sbjct: 19 LARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLG 78
Query: 66 GLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR--- 122
++G+ + A + + ++L PT+ A+LN G G + A Q
Sbjct: 79 IYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 138
Query: 123 PNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
P + LA + QA + + + + + + ++
Sbjct: 139 PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADA 198
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 221
SL + LG Y+ L +A + +K +A
Sbjct: 199 TDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 56.0 bits (133), Expect = 4e-09
Identities = 34/211 (16%), Positives = 52/211 (24%), Gaps = 37/211 (17%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
G A QALA+ P + + + LG + G AY + L + PT+ A
Sbjct: 48 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA 107
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ----------- 109
N G A + P P L L + L Q
Sbjct: 108 HLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167
Query: 110 -------------------------EAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADM 143
+ + L Y G D
Sbjct: 168 SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 227
Query: 144 AILYYKQAIGCDPRFLEAYNNLGNALKDVGR 174
A +K A+ + + L +G+
Sbjct: 228 ATALFKLAVANNVHNFVEHRYALLELSLLGQ 258
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 52.9 bits (125), Expect = 4e-08
Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 4/124 (3%)
Query: 233 LAVIYKQQGNYADAISCYNEVLRI----DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAI 288
LAV + ++ ++L D A L RG Y +G A D+ +A+
Sbjct: 5 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
Query: 289 TIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDR 348
IRP M E L +G+ +AA +++ L L P + A N L +
Sbjct: 65 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124
Query: 349 DRMF 352
Sbjct: 125 QDDL 128
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 42.9 bits (99), Expect = 7e-05
Identities = 33/191 (17%), Positives = 56/191 (29%), Gaps = 4/191 (2%)
Query: 165 LGNALKDVGRVDEAIQCYNQCLS----LQPSHPQALTNLGNIYMEWNMLPAAASYYKATL 220
L L+ + + + Q L+ Q L G +Y + A + + L
Sbjct: 5 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
Query: 221 AVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDA 280
A+ + FN L + Q GN+ A ++ VL +DP +NRG GR A
Sbjct: 65 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124
Query: 281 IQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
D + P L A + +A + + +
Sbjct: 125 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN 184
Query: 341 CVCSWEDRDRM 351
Sbjct: 185 ISEQTLMERLK 195
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 25/136 (18%), Positives = 45/136 (33%)
Query: 230 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 289
V+Y G A A + +++ L I P + G + G A + + +
Sbjct: 40 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 99
Query: 290 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRD 349
+ PT AH N A G + A P+ P + L Q + + ++
Sbjct: 100 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKE 159
Query: 350 RMFSEVEGIIRRQVNM 365
+ E + Q
Sbjct: 160 VLKQHFEKSDKEQWGW 175
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 41.7 bits (96), Expect = 2e-04
Identities = 22/115 (19%), Positives = 34/115 (29%), Gaps = 9/115 (7%)
Query: 251 NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGH 310
+EVL + PL + R+ + A+ Y G
Sbjct: 2 SEVLAV-PLQPTL-----QQEVILARMEQILA---SRALTDDERAQLLYERGVLYDSLGL 52
Query: 311 VEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNM 365
A + QAL +RPD PE L L +++ F V +
Sbjct: 53 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA 107
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 84.2 bits (207), Expect = 4e-19
Identities = 29/188 (15%), Positives = 60/188 (31%), Gaps = 3/188 (1%)
Query: 25 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 84
GN + EA +CY A+ P A+ ++N A +++ +AL + A
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64
Query: 85 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADM 143
++L A+ LG + EAI QRA + FG+ + +
Sbjct: 65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 124
Query: 144 AILYYKQAIGCDPRFLEAYNNL--GNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGN 201
++ I + L +++ + + ++
Sbjct: 125 WNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDK 184
Query: 202 IYMEWNML 209
+ + L
Sbjct: 185 YMADMDEL 192
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 78.5 bits (192), Expect = 4e-17
Identities = 24/172 (13%), Positives = 50/172 (29%), Gaps = 5/172 (2%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
+ GN L + EA CY + ++ P TN Y++ A + +
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64
Query: 220 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 279
L + L + +Y +AI+ + + + I
Sbjct: 65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI----- 119
Query: 280 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 331
A + +I R E+ + + E ++ ++ D
Sbjct: 120 AKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHI 171
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 77.3 bits (189), Expect = 1e-16
Identities = 23/186 (12%), Positives = 53/186 (28%), Gaps = 11/186 (5%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+ EAA C +A+ NPL+ ++N ++A + AL + A
Sbjct: 15 FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA 74
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
L +E + A+ + A L + + + + +R +
Sbjct: 75 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIH 134
Query: 121 TRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 180
+ ++ + R E + + G+ ++
Sbjct: 135 QES-----------ELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHD 183
Query: 181 CYNQCL 186
Y +
Sbjct: 184 KYMADM 189
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 77.3 bits (189), Expect = 1e-16
Identities = 25/195 (12%), Positives = 52/195 (26%), Gaps = 5/195 (2%)
Query: 123 PNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
P+A + + + A Y +AI +P Y N + + ++A+
Sbjct: 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
+ L L +A LG +E A + + ++ A L
Sbjct: 62 RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL-----AKEQRLNFGDDIPSA 116
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 302
A + + + ++ T +++ R A A
Sbjct: 117 LRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQA 176
Query: 303 SAYKDSGHVEAAIKS 317
A +
Sbjct: 177 CIEAKHDKYMADMDE 191
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 71.1 bits (173), Expect = 1e-14
Identities = 23/231 (9%), Positives = 51/231 (22%), Gaps = 38/231 (16%)
Query: 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 117
A A Y A+ P Y N Y + P++A+ +R
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 118 AVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDE 177
A++ D + ++A+ LG ++ DE
Sbjct: 64 ALE---------------------------------LDGQSVKAHFFLGQCQLEMESYDE 90
Query: 178 AIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIY 237
AI + SL + + S + + + +
Sbjct: 91 AIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIH-----QESELHSYLTR 145
Query: 238 KQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAI 288
+ + + + + + +
Sbjct: 146 LIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 68.5 bits (166), Expect = 1e-13
Identities = 21/107 (19%), Positives = 40/107 (37%)
Query: 230 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 289
Y +A +CY + +PL A NR Y ++ + A+ D RA+
Sbjct: 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 66
Query: 290 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLL 336
+ +AH L + + AI + ++A L + + +
Sbjct: 67 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI 113
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.4 bits (88), Expect = 0.002
Identities = 7/58 (12%), Positives = 12/58 (20%)
Query: 295 AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMF 352
A+ + A Y +A+ P N + E
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 84.6 bits (208), Expect = 2e-18
Identities = 31/248 (12%), Positives = 66/248 (26%), Gaps = 28/248 (11%)
Query: 93 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI 152
D + +Y+ A + +A + A +TY E +
Sbjct: 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVE-----AYKCFKSG-- 90
Query: 153 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAA 212
G +++ N G+ + + + + Y
Sbjct: 91 GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL------- 143
Query: 213 ASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL-------AADGLV 265
A + A + F A + G Y +A Y+++++ D +
Sbjct: 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203
Query: 266 NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH-----ANLASAY--KDSGHVEAAIKSY 318
+G A + + P A++ +L A DS + K +
Sbjct: 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF 263
Query: 319 KQALLLRP 326
+ L
Sbjct: 264 DNFMRLDK 271
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.5 bits (174), Expect = 4e-14
Identities = 28/250 (11%), Positives = 66/250 (26%), Gaps = 34/250 (13%)
Query: 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKL------KPTFPDAYLNLGNVYKALGMPQEA 111
A A ++ +LN A + +A + + Y+ +K+ G A
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96
Query: 112 IMCYQRAVQTRPN--------------AIAFGNLASTYYERGQADMAILYYKQAIGCDPR 157
+ + A+Q + N Y + +
Sbjct: 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156
Query: 158 FLEAYNNLGNALKDVGRVDEAIQCYNQCL-------SLQPSHPQALTNLGNIYMEWNMLP 210
+ + + G+ EA Y++ + Q S G +
Sbjct: 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV 216
Query: 211 AAASYYKATLAVTTGLSAPF-----NNLAVIYKQQ--GNYADAISCYNEVLRIDPLAADG 263
AAA + + + +L + ++ ++ +R+D
Sbjct: 217 AAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276
Query: 264 LVNRGNTYKE 273
L + ++
Sbjct: 277 LNKIKESIQQ 286
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.2 bits (168), Expect = 2e-13
Identities = 30/238 (12%), Positives = 62/238 (26%), Gaps = 34/238 (14%)
Query: 3 KGRLNEAAQCCRQALALN------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 56
+ LN A +A + + K+ G A A++I
Sbjct: 50 RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTH 109
Query: 57 FAIAWSNLAGLFMESGDLNRALQYYKEAVKL-------------KPTFPDAYLNLGNVYK 103
F L L Y +A+ ++ ++
Sbjct: 110 RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA 169
Query: 104 ALGMPQEAIMCYQRAVQTRPN--------AIAFGNLASTYYERGQADMAILYYKQAIGCD 155
G EA Y + +++ F A A ++ D
Sbjct: 170 LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229
Query: 156 PRFLEA-----YNNLGNAL--KDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW 206
P F ++ +L +A+ D ++ E + ++ + L L + +
Sbjct: 230 PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESIQQQ 287
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.0 bits (157), Expect = 5e-12
Identities = 15/190 (7%), Positives = 37/190 (19%), Gaps = 27/190 (14%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ------ALTNLGNIYMEWNMLPAAA 213
+ + ++ A + + Q + A
Sbjct: 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97
Query: 214 SYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE 273
N I+ +G + + E+ I N + Y +
Sbjct: 98 DSL--------------ENAIQIFTHRGQFRRGANFKFELGEILE-------NDLHDYAK 136
Query: 274 IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATC 333
+ ++ + A G A Y + + +
Sbjct: 137 AIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196
Query: 334 NLLHTLQCVC 343
+L
Sbjct: 197 SLKDYFLKKG 206
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 82.0 bits (202), Expect = 7e-18
Identities = 19/126 (15%), Positives = 43/126 (34%), Gaps = 1/126 (0%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+ +G+L +A + +A+ +P S+ L+ G + A ++++++ P +
Sbjct: 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 66
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLK-PTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 119
S L L + Q A L L N+ ++ +
Sbjct: 67 ASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 126
Query: 120 QTRPNA 125
+ R
Sbjct: 127 ELRQEK 132
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 81.2 bits (200), Expect = 1e-17
Identities = 15/136 (11%), Positives = 34/136 (25%), Gaps = 1/136 (0%)
Query: 134 TYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP 193
GQ A+ +AI P+ ++ L G + A + Q + L P +
Sbjct: 5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 64
Query: 194 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP-FNNLAVIYKQQGNYADAISCYNE 252
+ L ++ A + + +Y +
Sbjct: 65 PGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQ 124
Query: 253 VLRIDPLAADGLVNRG 268
+ + +
Sbjct: 125 IEELRQEKGFLANDTS 140
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 76.2 bits (187), Expect = 8e-16
Identities = 19/170 (11%), Positives = 42/170 (24%), Gaps = 36/170 (21%)
Query: 167 NALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGL 226
NAL + G++ +A++ + + P
Sbjct: 5 NALSE-GQLQQALELLIEAIKASPKDASLR------------------------------ 33
Query: 227 SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 286
++ + G++ A + +++ P G + K D Q
Sbjct: 34 ----SSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAAT 89
Query: 287 AITIR-PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
A + + S E + Q LR + +
Sbjct: 90 AKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDT 139
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 67.8 bits (165), Expect = 4e-13
Identities = 19/140 (13%), Positives = 40/140 (28%), Gaps = 2/140 (1%)
Query: 104 ALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAY 162
+ G Q+A+ A++ P +A + G + A Q+I P +L
Sbjct: 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67
Query: 163 NNLGNALKDVGRVDEAIQCYNQCLSL-QPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 221
+ L + +K + Q L + N+ M +
Sbjct: 68 SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127
Query: 222 VTTGLSAPFNNLAVIYKQQG 241
+ N+ + +
Sbjct: 128 LRQEKGFLANDTSFSDVRDI 147
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 65.1 bits (158), Expect = 4e-12
Identities = 14/119 (11%), Positives = 36/119 (30%), Gaps = 1/119 (0%)
Query: 239 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 298
+G A+ E ++ P A + G A + +++I + P
Sbjct: 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67
Query: 299 ANLASAYKDSGHVEAAIKSYKQ-ALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVE 356
+ L K + + + +L + + + +E + ++E
Sbjct: 68 SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 126
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.1 bits (194), Expect = 2e-17
Identities = 28/202 (13%), Positives = 56/202 (27%), Gaps = 33/202 (16%)
Query: 125 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 184
AI+ N ++ A+ + N+G + + EA + + +
Sbjct: 5 AISLWNEGVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAFTR 61
Query: 185 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 244
++ A G +Y + A K L N + YK G
Sbjct: 62 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR------GNQLIDYKILG--- 112
Query: 245 DAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASA 304
L+ A + L N Y + A + A +++
Sbjct: 113 ---------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE----------- 152
Query: 305 YKDSGHVEAAIKSYKQALLLRP 326
++ A++ + L P
Sbjct: 153 -PRHSKIDKAMECVWKQKLYEP 173
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.9 bits (183), Expect = 6e-16
Identities = 27/211 (12%), Positives = 54/211 (25%), Gaps = 40/211 (18%)
Query: 82 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQA 141
EA+ L N G + + A+ + P++ N+ Y
Sbjct: 3 VEAISLW--------NEGVLAADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNM 52
Query: 142 DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGN 201
A + ++I D AY G + D AI+ + L +
Sbjct: 53 TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ-------- 104
Query: 202 IYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAA 261
Y L N+A +Y ++ + A +
Sbjct: 105 ----------LIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 154
Query: 262 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 292
+++ A++ + P
Sbjct: 155 HSKIDK------------AMECVWKQKLYEP 173
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.2 bits (176), Expect = 4e-15
Identities = 29/164 (17%), Positives = 52/164 (31%), Gaps = 21/164 (12%)
Query: 164 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 223
N G D A+ ++ +Q H + N+G +Y + A + ++
Sbjct: 10 NEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 66
Query: 224 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQD 283
L+ + ++Y Q Y AI E L RGN I
Sbjct: 67 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ---------LRGN---------QLIDY 108
Query: 284 YIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 327
I + + E N+A Y + A + A ++ +
Sbjct: 109 KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.8 bits (175), Expect = 6e-15
Identities = 20/167 (11%), Positives = 45/167 (26%), Gaps = 20/167 (11%)
Query: 29 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 88
N G L + + A + +Q + N+ ++ ++ A + + ++
Sbjct: 10 NEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 66
Query: 89 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYY 148
AY G +Y AI + A+ + I Y
Sbjct: 67 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG-----------------NQLIDYK 109
Query: 149 KQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQA 195
+ E N+ +A + S++ +
Sbjct: 110 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHS 156
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.1 bits (155), Expect = 3e-12
Identities = 21/175 (12%), Positives = 48/175 (27%), Gaps = 30/175 (17%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
K A + N+G + + EA + ++ A+A
Sbjct: 16 ADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA 72
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKL----------------KPTFPDAYLNLGNVYKA 104
+ L+ ++ + A++ KEA+ K + N+ +Y
Sbjct: 73 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 132
Query: 105 LGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL 159
++A A + + D A+ + +P +
Sbjct: 133 KEEWKKAEEQLALATSMKSEP-----------RHSKIDKAMECVWKQKLYEPVVI 176
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (139), Expect = 4e-10
Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Query: 232 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR 291
N V+ + ++ A+ ++ + + N G Y + +T+A + + R+I
Sbjct: 10 NEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 66
Query: 292 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 329
+A A+ Y + + AIK K+AL+
Sbjct: 67 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 104
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.0 bits (178), Expect = 6e-16
Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 17/129 (13%)
Query: 82 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 140
K+A+K K LGN A+ Y +A + P N N A+ Y+E+G
Sbjct: 2 KQALKEK--------ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD 53
Query: 141 ADMAILYYKQAIGCDPRFLEAY-------NNLGNALKDVGRVDEAIQCYNQCLSLQPSHP 193
+ ++AI E Y +GN+ + +AI YN+ L+ P
Sbjct: 54 YNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TP 112
Query: 194 QALTNLGNI 202
L
Sbjct: 113 DVLKKCQQA 121
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.5 bits (156), Expect = 5e-13
Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 26 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAV 85
LGN + A Y +A + PT +N A ++ E GD N+ + ++A+
Sbjct: 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65
Query: 86 KLKPTFPDAY-------LNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNL 131
++ + Y +GN Y ++AI Y +++
Sbjct: 66 EVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC 118
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.4 bits (153), Expect = 1e-12
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 7/106 (6%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
LGN D A++ Y++ L P++ +TN +Y E +
Sbjct: 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64
Query: 220 L-------AVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 258
+ ++ + + Y ++ Y DAI YN+ L
Sbjct: 65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.8 bits (149), Expect = 5e-12
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 7/105 (6%)
Query: 230 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 289
L ++ ++ A+ Y++ +DP + N+ Y E G + +AI
Sbjct: 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66
Query: 290 IRPTMAEAH-------ANLASAYKDSGHVEAAIKSYKQALLLRPD 327
+ E + A + ++Y + AI Y ++L
Sbjct: 67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (113), Expect = 3e-07
Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 8/112 (7%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+K + A + +A L+P + +N + +G + +A+ +
Sbjct: 15 YKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED 74
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVK-------LKPTFPDAYLNLGNVYKAL 105
+ +A + G+ + YK+A+ T PD K L
Sbjct: 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKIL 125
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 1e-04
Identities = 14/75 (18%), Positives = 28/75 (37%)
Query: 261 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 320
A GN + A++ Y +A + PT N A+ Y + G + ++
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 321 ALLLRPDFPEATCNL 335
A+ + + E +
Sbjct: 64 AIEVGRENREDYRQI 78
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.3 bits (161), Expect = 9e-14
Identities = 11/118 (9%), Positives = 32/118 (27%), Gaps = 6/118 (5%)
Query: 63 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA---LGMPQEAIMCYQRAV 119
+ + DL + + ++ ++ I+ + +
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63
Query: 120 QTRPN---AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR 174
LA Y + + A+ Y + + +P+ +A K + +
Sbjct: 64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.3 bits (130), Expect = 1e-09
Identities = 12/119 (10%), Positives = 27/119 (22%), Gaps = 5/119 (4%)
Query: 163 NNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV 222
+ N L V + + + + + + +
Sbjct: 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL 62
Query: 223 TTGLSAPFN-----NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR 276
S LAV + Y A+ +L+ +P K + +
Sbjct: 63 LPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.3 bits (130), Expect = 2e-09
Identities = 13/108 (12%), Positives = 30/108 (27%), Gaps = 5/108 (4%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA---QGLVQEAYSCYLEALRIQPT--FA 58
L + + + A + + +++ E L
Sbjct: 13 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQR 72
Query: 59 IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 106
LA + +AL+Y + ++ +P A + KA+
Sbjct: 73 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.3 bits (130), Expect = 2e-09
Identities = 10/107 (9%), Positives = 20/107 (18%), Gaps = 5/107 (4%)
Query: 230 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD---AIQDYIR 286
+ + + ++ D I
Sbjct: 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEE 61
Query: 287 AITIRPT--MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 331
+ + LA E A+K + L P +A
Sbjct: 62 LLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 108
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.9 bits (82), Expect = 0.004
Identities = 3/52 (5%), Positives = 10/52 (19%)
Query: 299 ANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDR 350
+ + + K ++ L +D +
Sbjct: 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRK 54
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 62.3 bits (150), Expect = 7e-12
Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 16/129 (12%)
Query: 93 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----------------AIAFGNLASTYY 136
G VY G +A++ Y + V AF NLA Y
Sbjct: 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 75
Query: 137 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 196
+ + A+ +A+G D + G A + + A + + L + P + A
Sbjct: 76 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 135
Query: 197 TNLGNIYME 205
+ +
Sbjct: 136 LQIFMCQKK 144
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 62.3 bits (150), Expect = 7e-12
Identities = 31/161 (19%), Positives = 53/161 (32%), Gaps = 20/161 (12%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
G G+ +A+ Y + +S K +
Sbjct: 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGL-------------------SEKES 56
Query: 220 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 279
A + L A F NLA+ Y + Y A+ C ++ L +D GL RG +
Sbjct: 57 KASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFES 116
Query: 280 AIQDYIRAITIRPTMAEAHANLASAYKDSG-HVEAAIKSYK 319
A D+ + + + P A + K + H E ++Y
Sbjct: 117 AKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYA 157
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 58.8 bits (141), Expect = 1e-10
Identities = 20/137 (14%), Positives = 42/137 (30%), Gaps = 16/137 (11%)
Query: 58 AIAWSNLAGLFMESGDLNRALQYY---------------KEAVKLKPTFPDAYLNLGNVY 102
A ++ + G +A+ Y KE+ + A+LNL Y
Sbjct: 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 74
Query: 103 KALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEA 161
L +A+ C +A+ + + A +++ + +P+ A
Sbjct: 75 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 134
Query: 162 YNNLGNALKDVGRVDEA 178
+ K +E
Sbjct: 135 RLQIFMCQKKAKEHNER 151
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 55.3 bits (132), Expect = 2e-09
Identities = 17/126 (13%), Positives = 34/126 (26%), Gaps = 15/126 (11%)
Query: 1 MRKGRLNEAAQCCRQA---------------LALNPLLVDAHSNLGNLMKAQGLVQEAYS 45
+ G+ +A + A L+ A NL +A
Sbjct: 26 FKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE 85
Query: 46 CYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 105
C +AL + + + A +++ +++ P A L + K
Sbjct: 86 CCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145
Query: 106 GMPQEA 111
E
Sbjct: 146 KEHNER 151
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 55.0 bits (131), Expect = 3e-09
Identities = 21/144 (14%), Positives = 45/144 (31%), Gaps = 20/144 (13%)
Query: 230 FNNLAVIYKQQGNYADAISCYNEVLRI---------------DPLAADGLVNRGNTYKEI 274
+Y + G Y A+ Y +++ + +N Y ++
Sbjct: 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 77
Query: 275 GRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCN 334
T A++ +A+ + + A E+A +++ L + P A
Sbjct: 78 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 137
Query: 335 LLHTLQCVCSWEDRDR-----MFS 353
+ + +RDR MF
Sbjct: 138 IFMCQKKAKEHNERDRRTYANMFK 161
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 44.9 bits (105), Expect = 7e-06
Identities = 16/135 (11%), Positives = 42/135 (31%), Gaps = 16/135 (11%)
Query: 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRI---------------QPTFAIAWSNLAGLF 68
G + G +A Y + + + A+ NLA +
Sbjct: 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 74
Query: 69 MESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIA 127
++ + +A++ +A+ L G + + A +++ ++ P N A
Sbjct: 75 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 134
Query: 128 FGNLASTYYERGQAD 142
+ + + +
Sbjct: 135 RLQIFMCQKKAKEHN 149
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.6 bits (148), Expect = 1e-11
Identities = 18/150 (12%), Positives = 45/150 (30%), Gaps = 21/150 (14%)
Query: 73 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP--------- 123
D + L+ + + + + N+GN + + AI Y + ++
Sbjct: 12 DADVDLKDVDKILLI----SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDA 67
Query: 124 --------NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV 175
N+ + + A+ +A+ DP +A + +
Sbjct: 68 DGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY 127
Query: 176 DEAIQCYNQCLSLQPSHPQALTNLGNIYME 205
D+A+ + + P L + +
Sbjct: 128 DQALADLKKAQEIAPEDKAIQAELLKVKQK 157
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.4 bits (137), Expect = 4e-10
Identities = 31/178 (17%), Positives = 55/178 (30%), Gaps = 22/178 (12%)
Query: 141 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 200
AD+ + + + E N+GN + AI+ Y + L A +
Sbjct: 13 ADVDLKDVDKIL----LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDAD 68
Query: 201 NIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 260
++ P A S N+ + ++ A+ E L IDP
Sbjct: 69 GAKLQ----PVALSCV--------------LNIGACKLKMSDWQGAVDSCLEALEIDPSN 110
Query: 261 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY 318
L R ++ + A+ D +A I P A L + + K+
Sbjct: 111 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA 168
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.9 bits (133), Expect = 1e-09
Identities = 26/157 (16%), Positives = 47/157 (29%), Gaps = 19/157 (12%)
Query: 23 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYK 82
+ + N+GN + A Y + LR +RA
Sbjct: 26 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG------------------SRAAAEDA 67
Query: 83 EAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFG-NLASTYYERGQA 141
+ KL+P LN+G + Q A+ A++ P+ A + +
Sbjct: 68 DGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY 127
Query: 142 DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEA 178
D A+ K+A P L + + +
Sbjct: 128 DQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.7 bits (130), Expect = 3e-09
Identities = 27/167 (16%), Positives = 63/167 (37%), Gaps = 19/167 (11%)
Query: 200 GNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE------- 252
G+ + ++ P A + +S N+ + + N+ AI Y +
Sbjct: 3 GDSHPDF---PEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG 59
Query: 253 ---------VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 303
++ P+A ++N G ++ A+ + A+ I P+ +A A
Sbjct: 60 SRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQ 119
Query: 304 AYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDR 350
++ + A+ K+A + P+ LL Q + + +D+++
Sbjct: 120 GWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 166
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.8 bits (120), Expect = 6e-08
Identities = 23/105 (21%), Positives = 39/105 (37%)
Query: 7 NEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAG 66
+ AA L P+ + N+G Q A LEAL I P+ A A
Sbjct: 60 SRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQ 119
Query: 67 LFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEA 111
+ + ++AL K+A ++ P L V + + ++
Sbjct: 120 GWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 56.9 bits (136), Expect = 3e-10
Identities = 24/147 (16%), Positives = 45/147 (30%), Gaps = 18/147 (12%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
GN ++EAI Y + L + + + +
Sbjct: 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC-------- 69
Query: 220 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 279
NLA Y + +Y AI ++VL+ID L G G + +
Sbjct: 70 ----------NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEE 119
Query: 280 AIQDYIRAITIRPTMAEAHANLASAYK 306
A ++ +A ++ P + +
Sbjct: 120 AKENLYKAASLNPNNLDIRNSYELCVN 146
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 56.2 bits (134), Expect = 8e-10
Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 25/142 (17%)
Query: 81 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN---------------- 124
+ A +K GN + EAI+ Y+ A+ +
Sbjct: 14 VQSAFDIK--------EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI 65
Query: 125 -AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 183
NLA+ Y + AI + + + D ++A LG A G ++EA +
Sbjct: 66 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 125
Query: 184 QCLSLQPSHPQALTNLGNIYME 205
+ SL P++ + +
Sbjct: 126 KAASLNPNNLDIRNSYELCVNK 147
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 53.5 bits (127), Expect = 7e-09
Identities = 23/134 (17%), Positives = 39/134 (29%), Gaps = 17/134 (12%)
Query: 58 AIAWSNLAGLFMESGDLNRALQYYKE----------------AVKLKPTFPDAYLNLGNV 101
A F + ++N A+ YKE K K LNL
Sbjct: 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76
Query: 102 YKALGMPQEAIMCYQRAVQTRPNAIAFGN-LASTYYERGQADMAILYYKQAIGCDPRFLE 160
Y +AI + ++ N + L G + A +A +P L+
Sbjct: 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136
Query: 161 AYNNLGNALKDVGR 174
N+ + +
Sbjct: 137 IRNSYELCVNKLKE 150
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 48.9 bits (115), Expect = 2e-07
Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 16/127 (12%)
Query: 230 FNNLAVIYKQQGNYADAISCYNEVLRIDP----------------LAADGLVNRGNTYKE 273
+ ++ +AI Y E L + +N Y +
Sbjct: 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK 79
Query: 274 IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATC 333
AI + + I +A L A G +E A ++ +A L P+ +
Sbjct: 80 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRN 139
Query: 334 NLLHTLQ 340
+ +
Sbjct: 140 SYELCVN 146
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 47.7 bits (112), Expect = 6e-07
Identities = 20/122 (16%), Positives = 33/122 (27%), Gaps = 16/122 (13%)
Query: 1 MRKGRLNEAAQCCRQ----------------ALALNPLLVDAHSNLGNLMKAQGLVQEAY 44
+K +NEA ++ + + + NL +A
Sbjct: 28 FKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAI 87
Query: 45 SCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA 104
+ L+I A L M G L A + +A L P D +
Sbjct: 88 DHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147
Query: 105 LG 106
L
Sbjct: 148 LK 149
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 38.1 bits (87), Expect = 0.001
Identities = 21/130 (16%), Positives = 40/130 (30%), Gaps = 17/130 (13%)
Query: 29 NLGNLMKAQGLVQEAYSCY----------------LEALRIQPTFAIAWSNLAGLFMESG 72
GN + + EA Y + + + NLA + ++
Sbjct: 22 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK 81
Query: 73 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNL 131
D +A+ + + +K+ A LG G +EA +A P N +
Sbjct: 82 DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY 141
Query: 132 ASTYYERGQA 141
+ +A
Sbjct: 142 ELCVNKLKEA 151
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.1 bits (139), Expect = 1e-09
Identities = 36/274 (13%), Positives = 70/274 (25%), Gaps = 26/274 (9%)
Query: 59 IAW--SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLN--------------LGNVY 102
I W SN ++ R + Y++ + + PD + G++
Sbjct: 15 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMN 74
Query: 103 KALGMPQEAIMCYQRAVQTRP--NAIAFGNLASTYYERGQADMAILYYKQAIG-CDPRFL 159
A EA Y+RA+ T N + + A R + + Y + + D
Sbjct: 75 NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT 134
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
Y + + + + + + + + A
Sbjct: 135 LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFEL 194
Query: 220 LAVTTGLSAPFNN-LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY----KEI 274
G + + + VL L + + I
Sbjct: 195 GLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 254
Query: 275 GRVTDAIQDYIRAITIRPTMAEAH--ANLASAYK 306
G + ++ R T E A L YK
Sbjct: 255 GDLASILKVEKRRFTAFREEYEGKETALLVDRYK 288
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.9 bits (128), Expect = 2e-09
Identities = 21/111 (18%), Positives = 40/111 (36%)
Query: 159 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 218
+ GN VG +D+A+QCY++ + L P + +N Y + A
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 219 TLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGN 269
T+ + ++ A + + +A Y E L+ + N
Sbjct: 63 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 113
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.2 bits (121), Expect = 1e-08
Identities = 24/106 (22%), Positives = 46/106 (43%)
Query: 230 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 289
GN DA+ CY+E +++DP NR Y + G A +D + +
Sbjct: 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 65
Query: 290 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
++P + ++ A+A + E A ++Y++ L + P+ L
Sbjct: 66 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 111
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 1e-07
Identities = 23/103 (22%), Positives = 44/103 (42%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+ G +++A QC +A+ L+P +SN +G Q+AY + + ++P +
Sbjct: 14 LSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKG 73
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 103
+S A A + Y+E +K + P L N+
Sbjct: 74 YSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (110), Expect = 6e-07
Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 1/107 (0%)
Query: 63 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 122
+ G+++ ALQ Y EA+KL P Y N Y G Q+A + V +
Sbjct: 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK 67
Query: 123 PNAIAFGN-LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNA 168
P+ + A+ + + A Y++ + + + L N
Sbjct: 68 PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 4e-06
Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 34/108 (31%)
Query: 130 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYN-------------------------- 163
+ G D A+ Y +AI DP Y+
Sbjct: 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK 67
Query: 164 --------NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 203
AL+ + R +EA + Y + L + ++PQ L N+
Sbjct: 68 PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 5e-06
Identities = 25/101 (24%), Positives = 46/101 (45%)
Query: 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 83
V+ GN + G + +A CY EA+++ P + +SN + + + GD +A + +
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 84 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
V LKP + Y + L +EA Y+ ++ N
Sbjct: 63 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 103
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.1 bits (126), Expect = 8e-09
Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 4/141 (2%)
Query: 25 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 84
+ N + A Y +A+ + P+ AI + N + ++ + AL A
Sbjct: 11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 70
Query: 85 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMA 144
++L + Y ALG + A+ Y+ V+ +P+ A Y+ +
Sbjct: 71 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD----AKMKYQECNKIVK 126
Query: 145 ILYYKQAIGCDPRFLEAYNNL 165
+++AI D ++L
Sbjct: 127 QKAFERAIAGDEHKRSVVDSL 147
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.1 bits (126), Expect = 8e-09
Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 1/112 (0%)
Query: 93 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 151
+ N Y + AI Y +A++ P NAI +GN + Y A+ +A
Sbjct: 11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 70
Query: 152 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 203
I D ++++ Y + +G+ A++ Y + ++P A
Sbjct: 71 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.4 bits (124), Expect = 2e-08
Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 5/142 (3%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
E N + AI+ Y+Q + L PS+ N Y+ A
Sbjct: 11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 70
Query: 220 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 279
+ + + A G + A+ Y V+++ P D + K + +
Sbjct: 71 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ--- 127
Query: 280 AIQDYIRAITIRPTMAEAHANL 301
+ + RAI +L
Sbjct: 128 --KAFERAIAGDEHKRSVVDSL 147
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.0 bits (123), Expect = 2e-08
Identities = 23/106 (21%), Positives = 44/106 (41%)
Query: 230 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 289
A Y + +Y +AI Y++ + ++P A NR Y A+ D RAI
Sbjct: 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 72
Query: 290 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
+ + + A++ G AA++ Y+ + ++P +A
Sbjct: 73 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 118
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 6e-08
Identities = 24/120 (20%), Positives = 39/120 (32%), Gaps = 2/120 (1%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
+ A + QA+ LNP + N A A+ + +
Sbjct: 21 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG 80
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP--QEAIMCYQRA 118
+ A M G AL+ Y+ VK+KP DA + K + + AI +
Sbjct: 81 YYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 140
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 2e-07
Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 3/137 (2%)
Query: 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 117
A A + ++ D A+++Y +A++L P+ Y N Y A+ R
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69
Query: 118 AVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV--GR 174
A++ + A++ G+ A+ Y+ + P +A K V
Sbjct: 70 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 129
Query: 175 VDEAIQCYNQCLSLQPS 191
+ AI S+ S
Sbjct: 130 FERAIAGDEHKRSVVDS 146
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 3e-07
Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 2/133 (1%)
Query: 194 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV 253
+ L N Y + A +Y + + + + N ++ Y + Y A+
Sbjct: 11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 70
Query: 254 LRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK--DSGHV 311
+ +D G R + +G+ A++DY + ++P +A K
Sbjct: 71 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 130
Query: 312 EAAIKSYKQALLL 324
E AI + +
Sbjct: 131 ERAIAGDEHKRSV 143
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 51.4 bits (122), Expect = 5e-08
Identities = 18/124 (14%), Positives = 26/124 (20%), Gaps = 11/124 (8%)
Query: 93 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI 152
A G A G ++A A++ + A
Sbjct: 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL-----------RDFQFVEPFAT 60
Query: 153 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAA 212
+ A+ A GR I P T L Y + A
Sbjct: 61 ALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDA 120
Query: 213 ASYY 216
Y
Sbjct: 121 LGAY 124
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 50.3 bits (119), Expect = 1e-07
Identities = 17/121 (14%), Positives = 31/121 (25%), Gaps = 12/121 (9%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
GR +A++ AL V A + +A
Sbjct: 22 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQF------------VEPFATALVEDKVLA 69
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
+ A + G + + + P + L Y +A+ Y+R
Sbjct: 70 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129
Query: 121 T 121
T
Sbjct: 130 T 130
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (116), Expect = 5e-08
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 7/83 (8%)
Query: 130 NLASTYYERGQADMAILYYKQAI-------GCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
L Y L+ +QA+ + + L A+ G +D+A+
Sbjct: 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT 69
Query: 183 NQCLSLQPSHPQALTNLGNIYME 205
+ L L P H +A NL
Sbjct: 70 KKLLELDPEHQRANGNLKYFEYI 92
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (112), Expect = 2e-07
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 22 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI-------QPTFAIAWSNLAGLFMESGDL 74
L + LG + + +ALR L+ + GDL
Sbjct: 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL 62
Query: 75 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 106
++AL K+ ++L P A NL +
Sbjct: 63 DKALLLTKKLLELDPEHQRANGNLKYFEYIMA 94
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (111), Expect = 3e-07
Identities = 11/82 (13%), Positives = 22/82 (26%), Gaps = 7/82 (8%)
Query: 232 NLAVIYKQQGNYADAISCYNEVLRID-------PLAADGLVNRGNTYKEIGRVTDAIQDY 284
L + + +Y + LR L + G + A+
Sbjct: 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT 69
Query: 285 IRAITIRPTMAEAHANLASAYK 306
+ + + P A+ NL
Sbjct: 70 KKLLELDPEHQRANGNLKYFEY 91
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (92), Expect = 1e-04
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 10/89 (11%)
Query: 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKL-------KPTFPDAYLNLGNVYKALGMPQE 110
A L + D + ++A++ L G +
Sbjct: 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64
Query: 111 AIMCYQRAVQTRPN-AIAFGNLASTYYER 138
A++ ++ ++ P A GNL Y+E
Sbjct: 65 ALLLTKKLLELDPEHQRANGNLK--YFEY 91
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (87), Expect = 5e-04
Identities = 14/86 (16%), Positives = 22/86 (25%), Gaps = 7/86 (8%)
Query: 259 LAADGLVNRGNTYKEIGRVTDAIQDY-------IRAITIRPTMAEAHANLASAYKDSGHV 311
L A+ G L+ A G +
Sbjct: 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL 62
Query: 312 EAAIKSYKQALLLRPDFPEATCNLLH 337
+ A+ K+ L L P+ A NL +
Sbjct: 63 DKALLLTKKLLELDPEHQRANGNLKY 88
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (86), Expect = 7e-04
Identities = 13/89 (14%), Positives = 15/89 (16%), Gaps = 7/89 (7%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSL-------QPSHPQALTNLGNIYMEWNMLPAA 212
E LG Q L L L + L A
Sbjct: 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKA 65
Query: 213 ASYYKATLAVTTGLSAPFNNLAVIYKQQG 241
K L + NL
Sbjct: 66 LLLTKKLLELDPEHQRANGNLKYFEYIMA 94
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 7e-08
Identities = 16/132 (12%), Positives = 36/132 (27%), Gaps = 15/132 (11%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQC---------------LSLQPSHPQALTNLGNIYM 204
G G+ +A+ Y + Q + NL ++
Sbjct: 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 73
Query: 205 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL 264
+ AA L + + + + ++ A + + +VL++ P
Sbjct: 74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 133
Query: 265 VNRGNTYKEIGR 276
+ I R
Sbjct: 134 TQLAVCQQRIRR 145
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 7e-08
Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 16/131 (12%)
Query: 93 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP----------------NAIAFGNLASTYY 136
G VY G ++A++ Y++ V + NLA +
Sbjct: 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 73
Query: 137 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 196
+ AI +A+ D + + G A V + A + + L L P++ A
Sbjct: 74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 133
Query: 197 TNLGNIYMEWN 207
T L
Sbjct: 134 TQLAVCQQRIR 144
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 3e-07
Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 16/137 (11%)
Query: 58 AIAWSNLAGLFMESGDLNRALQYYKEAV---------------KLKPTFPDAYLNLGNVY 102
+ ++ + G +AL YK+ V K + ++LNL +
Sbjct: 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 72
Query: 103 KALGMPQEAIMCYQRAVQTRPNAIAFGN-LASTYYERGQADMAILYYKQAIGCDPRFLEA 161
L AI +A++ N + + ++A +++ + P A
Sbjct: 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132
Query: 162 YNNLGNALKDVGRVDEA 178
L + + R
Sbjct: 133 KTQLAVCQQRIRRQLAR 149
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 4e-06
Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 15/136 (11%)
Query: 230 FNNLAVIYKQQGNYADAISCYN---------------EVLRIDPLAADGLVNRGNTYKEI 274
+Y ++G Y A+ Y E + L +N + ++
Sbjct: 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 75
Query: 275 GRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCN 334
+ AI+ +A+ + + + A+ E A +++ L L P+ A
Sbjct: 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ 135
Query: 335 LLHTLQCVCSWEDRDR 350
L Q + R++
Sbjct: 136 LAVCQQRIRRQLAREK 151
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 2e-05
Identities = 16/126 (12%), Positives = 34/126 (26%), Gaps = 15/126 (11%)
Query: 1 MRKGRLNEAAQCCRQA---------------LALNPLLVDAHSNLGNLMKAQGLVQEAYS 45
++G+ +A ++ L + +H NL A
Sbjct: 24 FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIE 83
Query: 46 CYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 105
+AL + S + D A +++ ++L P A L + +
Sbjct: 84 SCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 143
Query: 106 GMPQEA 111
Sbjct: 144 RRQLAR 149
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 45.9 bits (107), Expect = 3e-06
Identities = 24/185 (12%), Positives = 52/185 (28%), Gaps = 46/185 (24%)
Query: 93 DAYLNLGNVYKAL--GMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQ 150
AYL L + + L G EA +RA++ + ++
Sbjct: 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHT---------------------MPPEE 46
Query: 151 AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP 210
A + L AL + DEA+ ++ L + + G +++
Sbjct: 47 AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISA---- 102
Query: 211 AAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNT 270
+ A+ G A+A+ + +V+ + +
Sbjct: 103 -------------------VYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 143
Query: 271 YKEIG 275
+
Sbjct: 144 MEVAI 148
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 45.1 bits (105), Expect = 5e-06
Identities = 18/171 (10%), Positives = 47/171 (27%), Gaps = 35/171 (20%)
Query: 160 EAYNNLGNALKDV--GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYK 217
AY L +A + + G DEA + + + + P + +
Sbjct: 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFC---------- 57
Query: 218 ATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLV-----------N 266
LA ++ +A+ ++ L + +
Sbjct: 58 ------------HAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYS 105
Query: 267 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKS 317
R +GR +A+ ++ + + + + + A + +
Sbjct: 106 RALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQLGA 156
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 42.4 bits (98), Expect = 4e-05
Identities = 20/163 (12%), Positives = 34/163 (20%), Gaps = 29/163 (17%)
Query: 25 DAHSNL--GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYK 82
A+ L G EA + A+ I T +
Sbjct: 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAF------------------- 48
Query: 83 EAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAS-----TYYE 137
+ L L EA+ +A+ Y
Sbjct: 49 ---DHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYS 105
Query: 138 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 180
R A + +A+ + +E R+ E
Sbjct: 106 RALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 148
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 37.8 bits (86), Expect = 0.001
Identities = 18/129 (13%), Positives = 36/129 (27%), Gaps = 23/129 (17%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVD------------AHSNLGNLMKAQGLVQEAYSCYL 48
+ G +EAA CR+A+ ++ + H+ L + EA
Sbjct: 20 LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSAD 79
Query: 49 EALRIQPTFAIAWS-----------NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLN 97
+AL + A G A+ +K+ V++
Sbjct: 80 KALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 139
Query: 98 LGNVYKALG 106
+ +
Sbjct: 140 KERMMEVAI 148
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 39.5 bits (90), Expect = 4e-04
Identities = 21/160 (13%), Positives = 42/160 (26%), Gaps = 18/160 (11%)
Query: 164 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 223
+ + ++ Q P LT G + +E + + + +
Sbjct: 2 DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 61
Query: 224 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQD 283
T + +A + + + + A Q
Sbjct: 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAF-------------LTPDETEAKHNFDLATQF 108
Query: 284 YIRAITIRPTMAEAHANLASAYKDSG-HVEAAIKSYKQAL 322
+ +A+ +P +L K H EA YKQ L
Sbjct: 109 FQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA----YKQGL 144
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 811 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.97 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.97 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.93 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.93 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.92 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.92 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.9 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.89 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.88 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.87 | |
| d2iw1a1 | 370 | Lipopolysaccharide core biosynthesis protein RfaG | 99.81 | |
| d1rzua_ | 477 | Glycogen synthase 1, GlgA {Agrobacterium tumefacie | 99.79 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.77 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.76 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.74 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.74 | |
| d2bisa1 | 437 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 99.73 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.68 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.67 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.59 | |
| d2bfwa1 | 196 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 99.58 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.58 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.56 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.55 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.54 | |
| d1uqta_ | 456 | Trehalose-6-phosphate synthase, OtsA {Escherichia | 99.54 | |
| d2f9fa1 | 166 | First mannosyl transferase WbaZ {Archaeoglobus ful | 99.51 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.51 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.5 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.5 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.49 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.44 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.41 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.36 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.34 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.34 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.3 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.3 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.28 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.24 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.21 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.21 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.2 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.19 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.17 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.13 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.12 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.1 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.99 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.89 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.76 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.74 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.72 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.68 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.66 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.6 | |
| d2c1xa1 | 450 | UDP glucose:flavonoid 3-o-glucosyltransferase {Gra | 98.27 | |
| d1rrva_ | 401 | TDP-vancosaminyltransferase GftD {Amycolatopsis or | 98.21 | |
| d2pq6a1 | 473 | (Iso)flavonoid glycosyltransferase {Medicago trunc | 98.2 | |
| d1pn3a_ | 391 | TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi | 98.16 | |
| d1iira_ | 401 | UDP-glucosyltransferase GtfB {Amycolatopsis orient | 98.13 | |
| d2vcha1 | 471 | Hydroquinone glucosyltransferase {Thale cress (Ara | 97.99 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.89 | |
| d1o6ca_ | 377 | UDP-N-acetylglucosamine 2-epimerase {Bacillus subt | 97.88 | |
| d1f0ka_ | 351 | Peptidoglycan biosynthesis glycosyltransferase Mur | 97.87 | |
| d1v4va_ | 373 | UDP-N-acetylglucosamine 2-epimerase {Thermus therm | 97.82 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.61 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.56 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.36 | |
| d2acva1 | 461 | Triterpene UDP-glucosyl transferase UGT71G1 {Medic | 97.26 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.99 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.34 | |
| d1pswa_ | 348 | ADP-heptose LPS heptosyltransferase II {Escherichi | 96.1 | |
| d1f6da_ | 376 | UDP-N-acetylglucosamine 2-epimerase {Escherichia c | 96.06 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 95.93 | |
| d1l5wa_ | 796 | Maltodextrin phosphorylase (MALP) {Escherichia col | 87.64 | |
| d2gj4a1 | 824 | Glycogen phosphorylase {Rabbit (Oryctolagus cunicu | 87.48 | |
| d1vi6a_ | 193 | Ribosomal protein S2 {Archaeon Archaeoglobus fulgi | 80.93 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5e-41 Score=280.07 Aligned_cols=343 Identities=33% Similarity=0.547 Sum_probs=232.7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 89978999999999995099998999999999999199999999999999729993999999999999829989999999
Q 003557 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 81 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 81 (811)
+.|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+
T Consensus 11 ~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~ 90 (388)
T d1w3ba_ 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 86999999999999998689989999999999998699999999999999859998999999999964200022222222
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH----------------------------------HHHHHHHHCCC-HH
Q ss_conf 99984099997999999999998499589999----------------------------------99999950998-66
Q 003557 82 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIM----------------------------------CYQRAVQTRPN-AI 126 (811)
Q Consensus 82 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~----------------------------------~~~~al~~~p~-~~ 126 (811)
..+.+..+................+....+.. .+.+.+...|+ ..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (388)
T d1w3ba_ 91 RHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 170 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHH
T ss_conf 21211222222222222222222222222222211122222222222222222221100013567888874025861068
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 88769999999299899999999999709995999999999999869989999999999960999868998799999972
Q 003557 127 AFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW 206 (811)
Q Consensus 127 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 206 (811)
.+..++..+...+++++|...+.++++.+|++..++..+|.++...|++++|+..++++....+.....+..+|.++...
T Consensus 171 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 250 (388)
T d1w3ba_ 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ 250 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99863630102471999999999999849464999999715522005299999999985777554799999999999987
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99479999999998206899067877999999839999999999999802999999999999999990998999999999
Q 003557 207 NMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 286 (811)
Q Consensus 207 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 286 (811)
|++++|+..++++++..|.+..++..+|.++...|++++|+..++++....|.....+..++.++...|++++|++.+++
T Consensus 251 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 330 (388)
T d1w3ba_ 251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 89999999999999849998999999999999748799999999865404873001015799999987899999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 9821999399999999999967998999999999996099996899879987421277
Q 003557 287 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCS 344 (811)
Q Consensus 287 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 344 (811)
+++.+|+++.++..+|.+|...|++++|+..|+++++++|++++++.+++.++..+||
T Consensus 331 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 9986889899999999999985999999999999997099989999999999998589
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5e-37 Score=254.09 Aligned_cols=331 Identities=29% Similarity=0.432 Sum_probs=310.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999999919999999999999972999399999999999982998999999999984099997999999999998499
Q 003557 28 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM 107 (811)
Q Consensus 28 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 107 (811)
+.+|..+++.|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.++...|+
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 99999999869999999999999986899899999999999986999999999999998599989999999999642000
Q ss_pred HHHHHHHHHHHHHHCCC-HHHH----------------------------------HHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 58999999999950998-6688----------------------------------769999999299899999999999
Q 003557 108 PQEAIMCYQRAVQTRPN-AIAF----------------------------------GNLASTYYERGQADMAILYYKQAI 152 (811)
Q Consensus 108 ~~~A~~~~~~al~~~p~-~~~~----------------------------------~~la~~~~~~g~~~~A~~~~~~al 152 (811)
+++|+..+..+.+..+. .... ..........+....+...+.+.+
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 22222222212112222222222222222222222222222111222222222222222222211000135678888740
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 70999599999999999986998999999999996099986899879999997299479999999998206899067877
Q 003557 153 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNN 232 (811)
Q Consensus 153 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 232 (811)
...|+....+..+|..+...+++++|...++++++.+|++..++..+|.++...|++++|+..+++.....+.....+..
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 242 (388)
T d1w3ba_ 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 25861068998636301024719999999999998494649999997155220052999999999857775547999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99999983999999999999980299999999999999999099899999999998219993999999999999679989
Q 003557 233 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 312 (811)
Q Consensus 233 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 312 (811)
+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|++.+++++...|.+...+..++.++...|+++
T Consensus 243 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 322 (388)
T d1w3ba_ 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHH
T ss_conf 99999987899999999999998499989999999999997487999999998654048730010157999999878999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9999999999609999689987998742127745675789999999
Q 003557 313 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 358 (811)
Q Consensus 313 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l 358 (811)
+|+..|+++++.+|++..++.+++.++...|++++|...+++++++
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999999999868898999999999999859999999999999970
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.9e-28 Score=196.34 Aligned_cols=259 Identities=17% Similarity=0.207 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 89999999999991999999999999997299939999999999998299899999999998409999799999999999
Q 003557 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 103 (811)
Q Consensus 24 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 103 (811)
....+..|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..+.++++.+|++...+..+|.++.
T Consensus 19 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 98 (323)
T d1fcha_ 19 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 98 (323)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 39999999999985999999999999998689989999999999998377588999998510022222222222222222
Q ss_pred HCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 849958999999999950998-6688769999999299899999999999709995999999999999869989999999
Q 003557 104 ALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182 (811)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 182 (811)
..|++++|+..+++++...|. ........... .... ..........+...+.+.+|...+
T Consensus 99 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------------~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 99 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGA-GGAG------------------LGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH-HHCC------------------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 222112111000267773610678887664000-0000------------------100001478888765799999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 99996099986899879999997299479999999998206899067877999999839999999999999802999999
Q 003557 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD 262 (811)
Q Consensus 183 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 262 (811)
.++++.+|+.. ....+..+|.++...|++++|+..+++++..+|++..
T Consensus 160 ~~al~~~p~~~--------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 207 (323)
T d1fcha_ 160 LAAVRLDPTSI--------------------------------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL 207 (323)
T ss_dssp HHHHHHSTTSC--------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHCCC--------------------------------CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99999713012--------------------------------2211103688888888775500211122222222211
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 99999999999099899999999998219993999999999999679989999999999960999968998
Q 003557 263 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATC 333 (811)
Q Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 333 (811)
++..+|.++...|++++|++.|+++++.+|+++.++..+|.+|...|++++|+..|+++++++|++.....
T Consensus 208 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 278 (323)
T d1fcha_ 208 LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG 278 (323)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred CHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 10133301221111013788877899884324999999999999878999999999999970975700112
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=7.8e-28 Score=194.34 Aligned_cols=250 Identities=18% Similarity=0.213 Sum_probs=175.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 999999999849958999999999950998-6688769999999299899999999999709995999999999999869
Q 003557 95 YLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 173 (811)
Q Consensus 95 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 173 (811)
.+..|..+...|++++|+..|+++++.+|+ ..++..+|.++...|++++|+..+.++++.+|++...+..+|.++...|
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999985999999999999998689989999999999998377588999998510022222222222222222222
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 98999999999996099986899879999997299479999999998206899067877999999839999999999999
Q 003557 174 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV 253 (811)
Q Consensus 174 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 253 (811)
++++|++.+++++...|............... ............+...+.+.+|...+.++
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGG-------------------AGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHH-------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 11211100026777361067888766400000-------------------00100001478888765799999999999
Q ss_pred HHCCCC--CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 802999--999999999999990998999999999982199939999999999996799899999999999609999689
Q 003557 254 LRIDPL--AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 331 (811)
Q Consensus 254 l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 331 (811)
++.+|. ++.++..+|.++...|++++|+..+++++..+|++..++..+|.++...|++++|+..|+++++++|++..+
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 242 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 242 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHH
T ss_conf 99713012221110368888888877550021112222222221110133301221111013788877899884324999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 98799874212774567578999999999974
Q 003557 332 TCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQV 363 (811)
Q Consensus 332 ~~~l~~~~~~~~~~~~a~~~~~~a~~l~~~~~ 363 (811)
+.+++.++..+|++++|...|++++++..+..
T Consensus 243 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 274 (323)
T d1fcha_ 243 RYNLGISCINLGAHREAVEHFLEALNMQRKSR 274 (323)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 99999999987899999999999997097570
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.2e-23 Score=165.38 Aligned_cols=202 Identities=12% Similarity=0.112 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 66887699999992998999999999997099959999999999998699-89999999999960999868998799999
Q 003557 125 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR-VDEAIQCYNQCLSLQPSHPQALTNLGNIY 203 (811)
Q Consensus 125 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~ 203 (811)
.+++..++.++...+.+++|+..++++++++|.+..+|..+|.++...++ +++|+..++++++.+|++..+|..+|.++
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999958866999999999998798876999999999998376799999999999988774226898875888
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC------H
Q ss_conf 9729947999999999820689906787799999983999999999999980299999999999999999099------8
Q 003557 204 MEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR------V 277 (811)
Q Consensus 204 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------~ 277 (811)
..+|++++|+..++++++.+|.+..+|..+|.++...+++++|+..++++++.+|.+..+|..+|.++...+. +
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~ 202 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVL 202 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 85053788998875554321004688998877888888667899999999987974499998899999874563102354
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999999998219993999999999999679989999999999960999
Q 003557 278 TDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 327 (811)
Q Consensus 278 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 327 (811)
++|++.+.++++.+|++..+|..++.++...+ ..++...+++++++.|+
T Consensus 203 ~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~ 251 (315)
T d2h6fa1 203 EREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPS 251 (315)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCC
T ss_conf 77679999999849885699999877988627-18899999999972877
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.7e-23 Score=164.82 Aligned_cols=202 Identities=13% Similarity=0.151 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 998999999999999199999999999999729993999999999999829-9899999999998409999799999999
Q 003557 22 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG-DLNRALQYYKEAVKLKPTFPDAYLNLGN 100 (811)
Q Consensus 22 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~ 100 (811)
+..+++..+|.++.+.+.+++|+..++++++++|.+..+|..+|.++...+ ++++|+..++++++.+|++..+|..+|.
T Consensus 41 ~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~ 120 (315)
T d2h6fa1 41 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999588669999999999987988769999999999983767999999999999887742268988758
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC-----
Q ss_conf 999849958999999999950998-66887699999992998999999999997099959999999999998699-----
Q 003557 101 VYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR----- 174 (811)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----- 174 (811)
++..+|++++|+..++++++.+|+ ..+|..+|.++...+++++|+..++++++.+|.+..+|.+++.++...+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHH
T ss_conf 88850537889988755543210046889988778888886678999999999879744999988999998745631023
Q ss_pred -HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf -89999999999960999868998799999972994799999999982068
Q 003557 175 -VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT 224 (811)
Q Consensus 175 -~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 224 (811)
+++|+..+.++++..|++..++..++.++.. ....++...++.+++..|
T Consensus 201 ~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~ 250 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQP 250 (315)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHCC
T ss_conf 54776799999998498856999998779886-271889999999997287
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.92 E-value=9.3e-25 Score=174.37 Aligned_cols=264 Identities=7% Similarity=-0.047 Sum_probs=143.8
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC-
Q ss_conf 9999999999999729993999999999999829----------98999999999984099997999999999998499-
Q 003557 39 LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG----------DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM- 107 (811)
Q Consensus 39 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~- 107 (811)
..++|+..+++++..+|++..+|..++.++...+ ++++|+..++++++.+|++..+|..++.++...++
T Consensus 44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~ 123 (334)
T d1dcea1 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (334)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
T ss_conf 66999999999999887858999999999999765003477877899999999999986888679898864899884304
Q ss_pred -HHHHHHHHHHHHHHCCC-HHHH-HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf -58999999999950998-6688-76999999929989999999999970999599999999999986998999999999
Q 003557 108 -PQEAIMCYQRAVQTRPN-AIAF-GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 184 (811)
Q Consensus 108 -~~~A~~~~~~al~~~p~-~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 184 (811)
+++|+..++++++.+|. ...+ ...+.++...+.+++|+..+++++..+|.+..++..+|.++...|++++|...+++
T Consensus 124 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~ 203 (334)
T d1dcea1 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (334)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 28999999999985592121111057899987445528999999998871898799999999999982688989998877
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 99609998689987999999729947999999999820689906787799999983999999999999980299999999
Q 003557 185 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL 264 (811)
Q Consensus 185 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 264 (811)
+++..|.... ....+...+..+++...+.+++...|.....+
T Consensus 204 ~~~~~~~~~~--------------------------------------~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~ 245 (334)
T d1dcea1 204 PENVLLKELE--------------------------------------LVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRC 245 (334)
T ss_dssp CHHHHHHHHH--------------------------------------HHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSC
T ss_pred HHHHHHHHHH--------------------------------------HHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 6776899999--------------------------------------99999882441488999998877186605678
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 9999999990998999999999982199939999999999996799899999999999609999689987998742
Q 003557 265 VNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340 (811)
Q Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 340 (811)
..++.++...+++.+|+..+.++++.+|.+..++..+|.++...|++++|+++|+++++++|.....+.++...+.
T Consensus 246 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 246 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 8799999998669999999998876291379999999999987899999999999999879663999999999986
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.92 E-value=2e-24 Score=172.25 Aligned_cols=264 Identities=10% Similarity=-0.012 Sum_probs=187.5
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-
Q ss_conf 789999999999950999989999999999991----------999999999999997299939999999999998299-
Q 003557 5 RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ----------GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD- 73 (811)
Q Consensus 5 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~- 73 (811)
..++|+.+++++++.+|++..+|..++.++... |++++|+..++++++.+|++..+|..+|.++...++
T Consensus 44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~ 123 (334)
T d1dcea1 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (334)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
T ss_conf 66999999999999887858999999999999765003477877899999999999986888679898864899884304
Q ss_pred -HHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf -8999999999984099997999-99999999849958999999999950998-66887699999992998999999999
Q 003557 74 -LNRALQYYKEAVKLKPTFPDAY-LNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQ 150 (811)
Q Consensus 74 -~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~ 150 (811)
+++|+..+.++++.+|.+..++ ...+.++...+.+++|+..++++++.+|+ ..++..+|.++...|++++|...+.+
T Consensus 124 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~ 203 (334)
T d1dcea1 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (334)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 28999999999985592121111057899987445528999999998871898799999999999982688989998877
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 99709995999999999999869989999999999960999868998799999972994799999999982068990678
Q 003557 151 AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPF 230 (811)
Q Consensus 151 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 230 (811)
++...|.....+ ..+...+..+++...+.+++...|.+...+..++..+...+++.+|...+.+++..+|.+..++
T Consensus 204 ~~~~~~~~~~~~----~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 279 (334)
T d1dcea1 204 PENVLLKELELV----QNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI 279 (334)
T ss_dssp CHHHHHHHHHHH----HHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 677689999999----9998824414889999988771866056788799999998669999999998876291379999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 779999998399999999999998029999999999999999
Q 003557 231 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYK 272 (811)
Q Consensus 231 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 272 (811)
..+|.++...|++++|+.+++++++.+|.....|..++..+.
T Consensus 280 ~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 280 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 999999987899999999999999879663999999999986
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=1e-19 Score=141.60 Aligned_cols=279 Identities=16% Similarity=0.067 Sum_probs=153.9
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC------
Q ss_conf 98999999999999199999999999999729993-----9999999999998299899999999998409999------
Q 003557 23 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF-----AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF------ 91 (811)
Q Consensus 23 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 91 (811)
.++.....|.++...|++++|+..+++++...|.+ ..++..+|.++...|++++|+..++++++..+..
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 90 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 39999999999998889999999999998548689967999999999999998799999999999999998750114899
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 79999999999984995899999999995099866887699999992998999999999997099959999999999998
Q 003557 92 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKD 171 (811)
Q Consensus 92 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 171 (811)
...+..++..+...|++..+...+.+++...+... ....+.....+..+|.++..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~-------------------------~~~~~~~~~~~~~la~~~~~ 145 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH-------------------------LEQLPMHEFLVRIRAQLLWA 145 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------------------------CTTSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------------------CCHHHHHHHHHHHHHHHHHH
T ss_conf 99998887887888889999988999999867503-------------------------41256788899888789998
Q ss_pred CCCHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-------CCHHHHHHHHHHHH
Q ss_conf 699899999999999609998-----689987999999729947999999999820689-------90678779999998
Q 003557 172 VGRVDEAIQCYNQCLSLQPSH-----PQALTNLGNIYMEWNMLPAAASYYKATLAVTTG-------LSAPFNNLAVIYKQ 239 (811)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-------~~~~~~~la~~~~~ 239 (811)
.|+++.+...+.++....+.. ...+...+..+...+++.++...+.++...... ....+..++..+..
T Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T d1hz4a_ 146 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 225 (366)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 14566668999998887663002468999988888887646678888999999999987311572699999999999986
Q ss_pred CCCHHHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHCC
Q ss_conf 399999999999998029999----999999999999909989999999999821------9993999999999999679
Q 003557 240 QGNYADAISCYNEVLRIDPLA----ADGLVNRGNTYKEIGRVTDAIQDYIRAITI------RPTMAEAHANLASAYKDSG 309 (811)
Q Consensus 240 ~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g 309 (811)
.+++++|...+++++...+.+ ...+..+|.++...|++++|...+++++.. .|....++..+|.+|...|
T Consensus 226 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 305 (366)
T d1hz4a_ 226 TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 305 (366)
T ss_dssp TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 04489899999999976224666777889999999987587999999999999887642667479999999999999878
Q ss_pred CHHHHHHHHHHHHHCCC
Q ss_conf 98999999999996099
Q 003557 310 HVEAAIKSYKQALLLRP 326 (811)
Q Consensus 310 ~~~~A~~~~~~al~~~p 326 (811)
++++|.+.+++++++.+
T Consensus 306 ~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 306 RKSDAQRVLLDALKLAN 322 (366)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 99999999999999765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=2.5e-19 Score=139.06 Aligned_cols=265 Identities=15% Similarity=0.062 Sum_probs=162.6
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC------CCHHHHHHH
Q ss_conf 999999849958999999999950998------66887699999992998999999999997099------959999999
Q 003557 98 LGNVYKALGMPQEAIMCYQRAVQTRPN------AIAFGNLASTYYERGQADMAILYYKQAIGCDP------RFLEAYNNL 165 (811)
Q Consensus 98 la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l 165 (811)
.|.++...|++++|+..++++++..|+ ..++..+|.++...|++++|+..+++++...+ .....+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999988899999999999985486899679999999999999987999999999999999987501148999999888
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-----CHHHHH
Q ss_conf 9999986998999999999996099--------986899879999997299479999999998206899-----067877
Q 003557 166 GNALKDVGRVDEAIQCYNQCLSLQP--------SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGL-----SAPFNN 232 (811)
Q Consensus 166 a~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~ 232 (811)
+..+...|++..+...+.+++...+ .....+..++.++...|+++.+...+.++....+.. ...+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78878888899999889999998675034125678889988878999814566668999998887663002468999988
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCC-------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC----HHHHHHH
Q ss_conf 999999839999999999999802999-------99999999999999099899999999998219993----9999999
Q 003557 233 LAVIYKQQGNYADAISCYNEVLRIDPL-------AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM----AEAHANL 301 (811)
Q Consensus 233 la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 301 (811)
.+..+...+++.++...+.++...... ....+...+.++...|++++|...+++++...+.+ ...+.++
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 88888764667888899999999998731157269999999999998604489899999999976224666777889999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999679989999999999960------99996899879987421277456757899999999997
Q 003557 302 ASAYKDSGHVEAAIKSYKQALLL------RPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQ 362 (811)
Q Consensus 302 a~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l~~~~ 362 (811)
|.++...|++++|...+++++.. .|....++..++.++...|++++|...++++.++.+++
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~ 324 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 324 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf 9999875879999999999998876426674799999999999998789999999999999976531
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=2.4e-20 Score=145.65 Aligned_cols=201 Identities=17% Similarity=0.101 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 88769999999299899999999999709995999999999999869989999999999960999868998799999972
Q 003557 127 AFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW 206 (811)
Q Consensus 127 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 206 (811)
.++.+|.+|...|++++|+..|++++.++|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 118 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 118 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998799999999999854349998899960042788877788752344689998761111588899999987
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH----HHHCCHHHHHH
Q ss_conf 99479999999998206899067877999999839999999999999802999999999999999----99099899999
Q 003557 207 NMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY----KEIGRVTDAIQ 282 (811)
Q Consensus 207 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~g~~~~A~~ 282 (811)
|++++|+..++++++..|.+......++..+...+..+.+...........+.... + .+...+ ...+..+.+..
T Consensus 119 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 196 (259)
T d1xnfa_ 119 GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG-W-NIVEFYLGNISEQTLMERLKA 196 (259)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTH-H-HHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-H-HHHHHHHHHHHHHHHHHHHHH
T ss_conf 66799999999998653000788899999998853587899999876403144434-5-577888888777778999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf 99999821999399999999999967998999999999996099996
Q 003557 283 DYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 329 (811)
Q Consensus 283 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 329 (811)
.+.......|....+++.+|.+|...|++++|+.+|++++..+|++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 197 DATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp HCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH
T ss_conf 99986640845099999999999987899999999999998399779
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=6.7e-20 Score=142.79 Aligned_cols=136 Identities=21% Similarity=0.161 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 78999999999995099----99899999999999919999999999999972999399999999999982998999999
Q 003557 5 RLNEAAQCCRQALALNP----LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 80 (811)
Q Consensus 5 ~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 80 (811)
+.+.|+..+++++...+ ..+.+++.+|.+|...|++++|+..|++++.++|+++.++..+|.++...|++++|+..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 99999999999987633699999999999999999879999999999985434999889996004278887778875234
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCC
Q ss_conf 99998409999799999999999849958999999999950998-6688769999999299
Q 003557 81 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQ 140 (811)
Q Consensus 81 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~ 140 (811)
|+++++.+|++..++..+|.++...|++++|+..++++++..|+ ......++..+...+.
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 154 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE 154 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 4689998761111588899999987667999999999986530007888999999988535
|
| >d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Lipopolysaccharide core biosynthesis protein RfaG species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=4.1e-20 Score=144.18 Aligned_cols=328 Identities=13% Similarity=0.092 Sum_probs=195.6
Q ss_pred EEEECCCC-CCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEECC--CCC--------HHHHHHH
Q ss_conf 75532887-997367658998502589876999986379999079999974059358789--999--------9999999
Q 003557 428 VGYVSSDF-GNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVS--AMS--------SDMIAKL 496 (811)
Q Consensus 428 ig~~s~~~-~~h~~~~~~~~l~~~~d~~~fei~~y~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--------~~~~~~~ 496 (811)
|+++...+ ...++.+.+..+.+.+.+.+++|.+++.....+.+ . ....+.++ .+. ...+...
T Consensus 2 i~f~~~~y~p~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (370)
T d2iw1a1 2 VAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCP--K-----AFELIQVPVKSHTNHGRNAEYYAWVQNH 74 (370)
T ss_dssp EEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESEECSCCC--T-----TCEEEECCCCCSSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC--C-----CEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 89991488999989999999999999779979999567877888--8-----6389986765544301158899999999
Q ss_pred HHHCCCEEEEECCCCCCCCCHHHHHCCCCCEE-EECC----C--CCCCC-------------CCCCCCEEEE-CCCCCC-
Q ss_conf 87189729993787777850112101898448-8123----3--68877-------------8996438972-575489-
Q 003557 497 INEDKIQILINLNGYTKGARNEIFAMQPAPIQ-VSYM----G--FPGTT-------------GASYIDYLVT-DEFVSP- 554 (811)
Q Consensus 497 i~~~~~dil~~~~~~~~~~~~~~~~~r~Apvq-~~~~----g--~~~t~-------------g~~~~dy~~~-d~~~~~- 554 (811)
++....|+++...... .+...+.+.+. ..+. + +..+. .....+-.+. ......
T Consensus 75 ~~~~~~d~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (370)
T d2iw1a1 75 LKEHPADRVVGFNKMP-----GLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIAD 149 (370)
T ss_dssp HHHSCCSEEEESSCCT-----TCSEEECCSCCHHHHHHHHCCHHHHTSHHHHHHHHHHHHHHSTTCCCEEEESCHHHHHH
T ss_pred HHHCCCCEEEECCCCC-----HHHHHHHHHCCCCEEEEEECCCCCCCCCHHCHHHHHHHHHHHHCCCCEEEEECHHHHHH
T ss_conf 9861655253103672-----37899876224410466304742000400000678899997421574699824799999
Q ss_pred -CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC--CCCCHHHHHHHHHHHHHCCC
Q ss_conf -677788731257769853347996555567899999886779999994799853987--88898899999999833699
Q 003557 555 -LRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPN 631 (811)
Q Consensus 555 -~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~ 631 (811)
........+++..+|++........ ...+......|..+|++++.++++++++. .|+.+.+++++.++.++.|+
T Consensus 150 ~~~~~~~~~~~i~vi~~gv~~~~~~~---~~~~~~~~~~r~~~~~~~~~~~i~~~gr~~~~Kg~~~li~a~~~l~~~~~~ 226 (370)
T d2iw1a1 150 FQKHYQTEPERFQILPPGIYPDRKYS---EQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRH 226 (370)
T ss_dssp HHHHHCCCGGGEEECCCCCCGGGSGG---GSCTTHHHHHHHHTTCCTTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHH
T ss_pred HHHHCCCCCCEEEEEEEECCCCCCCC---CCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHCCCCCCCCCCCCC
T ss_conf 99860999642899974022221124---676566666543048886636999985145542033320111233233221
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHCCCCCEEECCCCCCC-HHHHHHHHHHCCCCCCCCCC
Q ss_conf 07996228833599999999982999995688279890889986077718716989998-06799987728984423688
Q 003557 632 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLE 710 (811)
Q Consensus 632 ~~l~~~~~~~~~~~~l~~~~~~~gi~~~rv~f~~~~~~~~~~~~~~~~Di~l~~~~~~~-~~t~~eal~~G~Pvvt~~g~ 710 (811)
..++++|.++. ...++..+++.|. .+++.|.|.. ++...+|..+|+|+.|+.++| |++++|||++|+|||+.+..
T Consensus 227 ~~~~ii~g~~~-~~~~~~~~~~~~~-~~~v~~~g~~--~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PvI~s~~~ 302 (370)
T d2iw1a1 227 NTLLFVVGQDK-PRKFEALAEKLGV-RSNVHFFSGR--NDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVC 302 (370)
T ss_dssp TEEEEEESSSC-CHHHHHHHHHHTC-GGGEEEESCC--SCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEEETTS
T ss_pred CEEEECCCCCC-CCCCCCCCCCCCC-CCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCC
T ss_conf 00000112222-2232222222222-2222223323--344422233334443222234331133214577039993899
Q ss_pred CCCCCHHHHHHHHCCCCCCCCC--CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6511015899885599986443--799899999999840999999999999941203999996889999999999
Q 003557 711 KMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 783 (811)
Q Consensus 711 ~~~~~~~~~~l~~~g~~~~~v~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 783 (811)
.+++-+.. |..+.++. .|.+++++.+.+|++|++++.+|+++.|+.... ++...+.+.++++|.
T Consensus 303 g~~e~i~~------~~~G~l~~~~~d~~~la~~i~~ll~d~~~~~~~~~~ar~~~~~---~~~~~~~~~~~~ii~ 368 (370)
T d2iw1a1 303 GYAHYIAD------ANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADT---QDLYSLPEKAADIIT 368 (370)
T ss_dssp TTTHHHHH------HTCEEEECSSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH---SCCSCHHHHHHHHHH
T ss_pred CHHHHHCC------CCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHH
T ss_conf 71888527------9836998699999999999999976999999999999999998---285479999999984
|
| >d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.79 E-value=8.4e-19 Score=135.66 Aligned_cols=185 Identities=9% Similarity=-0.039 Sum_probs=130.2
Q ss_pred CCCCCCCC-CCEEEEECCCC--CCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCCCCH
Q ss_conf 67799999-94799853987--8889889999999983369907996228833599999999982999995688279890
Q 003557 593 RSDYGLPE-DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMK 669 (811)
Q Consensus 593 r~~~gl~~-~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~gi~~~rv~f~~~~~~ 669 (811)
+...++++ +.++|++++|. .|+.+.+++++.++++. +.+|+++|.|+. ....+......+. .++|.|.+..+.
T Consensus 281 ~~~~~~~~~~~~~i~~vgrl~~~KG~~~Ll~a~~~~~~~--~~~l~~~G~G~~-~~~~~~~~~~~~~-~~~v~~~~~~~~ 356 (477)
T d1rzua_ 281 AEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVSL--GGRLVVLGAGDV-ALEGALLAAASRH-HGRVGVAIGYNE 356 (477)
T ss_dssp HHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHHT--TCEEEEEECBCH-HHHHHHHHHHHHT-TTTEEEEESCCH
T ss_pred HHHCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHH--CCEEEEEECCCC-HHHHHHHHHHHHC-CCEEEEECCCCH
T ss_conf 874144667863899985002158837999999987865--983999936774-5778999987635-872789715470
Q ss_pred HHHHHHCCCCCEEECCCCCCC-HHHHHHHHHHCCCCCCCCCCCCCCCHHH---HHHHHCCCCCCCC-CCCHHHHHHHHHH
Q ss_conf 889986077718716989998-0679998772898442368865110158---9988559998644-3799899999999
Q 003557 670 QEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAG---SLCLATGLGEEMI-VNSMKEYEERAVS 744 (811)
Q Consensus 670 ~~~~~~~~~~Di~l~~~~~~~-~~t~~eal~~G~Pvvt~~g~~~~~~~~~---~~l~~~g~~~~~v-~~~~~~~~~~~~~ 744 (811)
.+....|..+|+||.||.+++ |++.+|||++|+|||+.+...+++-+.. +.+..-+..+.++ ..|.+++++.+.+
T Consensus 357 ~~~~~~~~~aD~~v~PS~~E~fglv~lEAma~G~PvVas~~GG~~E~v~d~~~~~~~~~~~~G~l~~~~d~~~la~ai~~ 436 (477)
T d1rzua_ 357 PLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRR 436 (477)
T ss_dssp HHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCCEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHH
T ss_conf 57999998385134886535788899999983998999079997405524875533467874489699999999999999
Q ss_pred HH---CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 84---0999999999999941203999996889999999999999
Q 003557 745 LA---LDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMW 786 (811)
Q Consensus 745 l~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~ 786 (811)
++ +|++++.+++++..+ ..|+++..+++++++|++++
T Consensus 437 ~l~~~~~~~~~~~~~~~a~~-----~~fsw~~~a~~~~~lY~~ll 476 (477)
T d1rzua_ 437 TVRYYHDPKLWTQMQKLGMK-----SDVSWEKSAGLYAALYSQLI 476 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHT-----CCCBHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCHHHHHHHHHHHHH-----HHCCHHHHHHHHHHHHHHHH
T ss_conf 98600799999999999998-----51899999999999999984
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=4.4e-19 Score=137.47 Aligned_cols=224 Identities=14% Similarity=0.099 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99999999995099998999999999999199999999999999729993999999999999829989999999999840
Q 003557 8 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL 87 (811)
Q Consensus 8 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 87 (811)
+|++.|+++++..|+.++++..+|.++...+++++| |++++..+|+..........+ ....+..+++.+++..+.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~L--w~~~y~~~ie~~r~~~k~ 78 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDL--WNHAFKNQITTLQGQAKN 78 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHH--HHHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHH---HHHHHHCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCC
T ss_conf 999999999871999799995199999997629999---999987493019998579999--999999999999985616
Q ss_pred CC--CCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 99--9979-9999999999849958999999999950998-668876999999929989999999999970999599999
Q 003557 88 KP--TFPD-AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYN 163 (811)
Q Consensus 88 ~p--~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 163 (811)
.. +... ....++.+....+.|+.++..+.+..+.+|+ ...+..+|..+...++.++|...+.+++..++ ..++.
T Consensus 79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~ 156 (497)
T d1ya0a1 79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLV 156 (497)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH--HHHHH
T ss_conf 4584379999999999999999999999999998789911399999857998758999999999998827889--99999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 999999986998999999999996099986899879999997299479999999998206899067877999999
Q 003557 164 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYK 238 (811)
Q Consensus 164 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 238 (811)
.+|.++...+++++|+.+|++++++.|++...+..+|.++...|+..+|+.+|.+++...+..+.++.+++.++.
T Consensus 157 ~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 999999980247899999999998789965999999999998699999999999998179997899999999998
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=4.1e-19 Score=137.68 Aligned_cols=228 Identities=13% Similarity=0.100 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999999729993999999999999829989999999999840999979999999999984995899999999995
Q 003557 41 QEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120 (811)
Q Consensus 41 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 120 (811)
-+|+++|++++.+.|+.+.++..+|.++...+++++| |++++..+|+....+.....+. ...+..+++.+++..+
T Consensus 3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k 77 (497)
T d1ya0a1 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHH---HHHHHHCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCC
T ss_conf 8999999999871999799995199999997629999---9999874930199985799999--9999999999998561
Q ss_pred HCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 0998----668876999999929989999999999970999599999999999986998999999999996099986899
Q 003557 121 TRPN----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 196 (811)
Q Consensus 121 ~~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 196 (811)
.... ......++.+....+.|+.++..+.+..+.+|.+...+.++|..+...+++++|...+.+++..++ ..++
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~ 155 (497)
T d1ya0a1 78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCL 155 (497)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH--HHHH
T ss_conf 64584379999999999999999999999999998789911399999857998758999999999998827889--9999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 8799999972994799999999982068990678779999998399999999999998029999999999999999909
Q 003557 197 TNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG 275 (811)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 275 (811)
..+|.++...+++++|+.+|+++++..|++...++.+|.++...|++.+|+.+|.+++...|..+.++.+++..+.+..
T Consensus 156 ~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999980247899999999998789965999999999998699999999999998179997899999999998753
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.74 E-value=1.7e-14 Score=107.70 Aligned_cols=236 Identities=11% Similarity=0.064 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99999999998409999799999999999849958999999999950998668876999999929989999999999970
Q 003557 75 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGC 154 (811)
Q Consensus 75 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 154 (811)
+.+...|++++...|.++..|...+..+...++.... .+......+..++|...++++++.
T Consensus 33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~a~~i~~ral~~ 93 (308)
T d2onda1 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE-------------------KGDMNNAKLFSDEAANIYERAIST 93 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-------------------TSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH-------------------HHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9999999999987779999999999999870736887-------------------778763102459999999999987
Q ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf -999599999999999986998999999999996099986-899879999997299479999999998206899067877
Q 003557 155 -DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP-QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNN 232 (811)
Q Consensus 155 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 232 (811)
.|.....+..++..+...|++++|...|+++++..|.+. .+|..++......++++.|...|+++++..|.....+..
T Consensus 94 ~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~ 173 (308)
T d2onda1 94 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 173 (308)
T ss_dssp TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 49987999999999998613389999999999987157869999999999998278688999999999808886799999
Q ss_pred HHHHHH-HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC----HHHHHHHHHHHHH
Q ss_conf 999999-83999999999999980299999999999999999099899999999998219993----9999999999996
Q 003557 233 LAVIYK-QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM----AEAHANLASAYKD 307 (811)
Q Consensus 233 la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~ 307 (811)
.+.... ..|+.+.|...++++++..|.+...|...+..+...|+++.|...|+++++..|.+ ...|.........
T Consensus 174 ~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~ 253 (308)
T d2onda1 174 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 253 (308)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999876557789999999999861003889999999999869868999999999982789868999999999999998
Q ss_pred CCCHHHHHHHHHHHHHCCCCCH
Q ss_conf 7998999999999996099996
Q 003557 308 SGHVEAAIKSYKQALLLRPDFP 329 (811)
Q Consensus 308 ~g~~~~A~~~~~~al~~~p~~~ 329 (811)
.|+.+.+..+++++.+..|...
T Consensus 254 ~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 254 IGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HSCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCHHHHHHHHHHHHHHCCCCC
T ss_conf 4999999999999998771102
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.74 E-value=1.7e-14 Score=107.69 Aligned_cols=218 Identities=9% Similarity=-0.022 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHH--------------CCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCC
Q ss_conf 99999999997099959999999999998--------------69989999999999960-9998689987999999729
Q 003557 143 MAILYYKQAIGCDPRFLEAYNNLGNALKD--------------VGRVDEAIQCYNQCLSL-QPSHPQALTNLGNIYMEWN 207 (811)
Q Consensus 143 ~A~~~~~~al~~~p~~~~~~~~la~~~~~--------------~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g 207 (811)
.+...|++++...|.+..+|...+..+.. .+..++|...|+++++. .|.+...+..++.++...|
T Consensus 34 Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~ 113 (308)
T d2onda1 34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 113 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 99999999998777999999999999987073688777876310245999999999998749987999999999998613
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HCCHHHHHHHHH
Q ss_conf 94799999999982068990-6787799999983999999999999980299999999999999999-099899999999
Q 003557 208 MLPAAASYYKATLAVTTGLS-APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE-IGRVTDAIQDYI 285 (811)
Q Consensus 208 ~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~ 285 (811)
++++|...+++++...|.+. .++..++......++++.|...|+++++..|.....+...+..... .|+.+.|...|+
T Consensus 114 ~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e 193 (308)
T d2onda1 114 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFE 193 (308)
T ss_dssp CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 38999999999998715786999999999999827868899999999980888679999999999876557789999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 998219993999999999999679989999999999960999968----998799874212774567578999999999
Q 003557 286 RAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE----ATCNLLHTLQCVCSWEDRDRMFSEVEGIIR 360 (811)
Q Consensus 286 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~~a~~~~~~a~~l~~ 360 (811)
++++..|+++..|...+..+...|+++.|..+|+++++..|.+++ .+...+......|+.+.+....+++.+++.
T Consensus 194 ~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~ 272 (308)
T d2onda1 194 LGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 9998610038899999999998698689999999999827898689999999999999984999999999999998771
|
| >d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.73 E-value=1.1e-17 Score=128.28 Aligned_cols=183 Identities=9% Similarity=0.049 Sum_probs=138.9
Q ss_pred CCCCCCCCCCCEEEEECCC---CCCCCHHHHHHHHHHHH--HCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCC
Q ss_conf 8677999999479985398---78889889999999983--369907996228833599999999982999995688279
Q 003557 592 KRSDYGLPEDKFIFACFNQ---LYKMDPEIFNTWCNILR--RVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDV 666 (811)
Q Consensus 592 ~r~~~gl~~~~~~~~~~~~---~~K~~~~~~~~~~~il~--~~p~~~l~~~~~~~~~~~~l~~~~~~~gi~~~rv~f~~~ 666 (811)
.+..+|+.++ +++..+++ ..|+.+.+++++..+.. ..|+.+|+++|.++...........+ .. .+.+.|.|.
T Consensus 240 ~~~~~~~~~~-~~i~~~G~~~~~~Kg~~~ll~a~~~~~~~~~~~~~~lvi~G~~~~~~~~~~~~~~~-~~-~~~~~~~~~ 316 (437)
T d2bisa1 240 LLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEE-KH-GNVKVITEM 316 (437)
T ss_dssp HHHHTTCCSC-EEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHH-TC-TTEEEECSC
T ss_pred HHHHHHCCCC-CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHCC-CC-CCCEECCCC
T ss_conf 5455402678-66987303566512589998641023323333321145310223333210022102-32-100002345
Q ss_pred CCHHHHHHHCCCCCEEECCCCCCC-HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC--CCHHHHHHHHH
Q ss_conf 890889986077718716989998-067999877289844236886511015899885599986443--79989999999
Q 003557 667 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAV 743 (811)
Q Consensus 667 ~~~~~~~~~~~~~Di~l~~~~~~~-~~t~~eal~~G~Pvvt~~g~~~~~~~~~~~l~~~g~~~~~v~--~~~~~~~~~~~ 743 (811)
.+.++....+..+|+++.|+.++| |++++|||++|+|||+.+-....+ ++. +-.+ ++. .|.+++++.+.
T Consensus 317 ~~~~~~~~~~~~adi~v~~s~~e~~~~~~~Eama~G~Pvi~~~~g~~~e-----~i~--~~~G-~~~~~~d~~~la~~i~ 388 (437)
T d2bisa1 317 LSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRD-----IIT--NETG-ILVKAGDPGELANAIL 388 (437)
T ss_dssp CCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHTTTCEEEEESCTTHHH-----HCC--TTTC-EEECTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHH-----HEE--CCCE-EEECCCCHHHHHHHHH
T ss_conf 7688899987642235444655564268999998799899938998077-----377--8958-9977999999999999
Q ss_pred HHHC-CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9840-99999999999994120399999688999999999999999
Q 003557 744 SLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 788 (811)
Q Consensus 744 ~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 788 (811)
+++. |++.+++++++.++.... |+++.++++++++|+.+++|
T Consensus 389 ~ll~~~~~~~~~~~~~~~~~~~~---~s~~~~a~~~~~iY~~~i~r 431 (437)
T d2bisa1 389 KALELSRSDLSKFRENCKKRAMS---FSWEKSAERYVKAYTGSIDR 431 (437)
T ss_dssp HHHTTTTSCTHHHHHHHHHHHHH---SCHHHHHHHHHHHHHTCSCC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHH
T ss_conf 99837999999999999999996---99999999999999999986
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=2.3e-15 Score=113.33 Aligned_cols=96 Identities=17% Similarity=0.229 Sum_probs=43.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHH-----H
Q ss_conf 87799999983999999999999980299999-------99999999999909989999999999821999399-----9
Q 003557 230 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAA-------DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE-----A 297 (811)
Q Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~ 297 (811)
+..+|.++...|++++|+..+++++...+... ..+...+.++...+++..|...++++.+.+|.... .
T Consensus 161 ~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~ 240 (290)
T d1qqea_ 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNF 240 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 89999999981739999999999998681332455569999999999999846599999999999975977444399999
Q ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHHCC
Q ss_conf 9999999996--799899999999999609
Q 003557 298 HANLASAYKD--SGHVEAAIKSYKQALLLR 325 (811)
Q Consensus 298 ~~~la~~~~~--~g~~~~A~~~~~~al~~~ 325 (811)
...+..++.. .+.+++|+..|+++.+++
T Consensus 241 l~~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 241 LKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp HHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 999999998368999999999998875468
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=1.1e-14 Score=108.99 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=24.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9999982998999999999984099------99799999999999849958999999999950
Q 003557 65 AGLFMESGDLNRALQYYKEAVKLKP------TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 121 (811)
Q Consensus 65 a~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 121 (811)
|.+|...+++++|+..|.++++... .....+..+|.+|...|++++|+..++++++.
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~ 106 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI 106 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999998869999999999999999875998899999999999999808858889999976677
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.59 E-value=1.9e-11 Score=87.89 Aligned_cols=96 Identities=19% Similarity=0.311 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 678779999998----3999999999999980299999999999999999----09989999999999821999399999
Q 003557 228 APFNNLAVIYKQ----QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE----IGRVTDAIQDYIRAITIRPTMAEAHA 299 (811)
Q Consensus 228 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 299 (811)
..+..++..+.. ..+...+...++.+.+ ..+..+.+.+|.++.. ..++++|+.+|+++.+. .++.+++
T Consensus 143 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~ 218 (265)
T d1ouva_ 143 DGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCF 218 (265)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCC--CCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCC--CCHHHHH
T ss_conf 10445555640688743342200012211323--2222332211312126765431034445467665303--6899999
Q ss_pred HHHHHHHH----CCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999996----79989999999999960999
Q 003557 300 NLASAYKD----SGHVEAAIKSYKQALLLRPD 327 (811)
Q Consensus 300 ~la~~~~~----~g~~~~A~~~~~~al~~~p~ 327 (811)
.||.+|.. ..++++|.++|+++.+.+..
T Consensus 219 ~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 219 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCH
T ss_conf 99999983999761899999999999987699
|
| >d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.58 E-value=3.4e-14 Score=105.70 Aligned_cols=163 Identities=9% Similarity=0.047 Sum_probs=120.6
Q ss_pred CCCCCCCCCCCEEEEECCC---CCCCCHHHHHHHHHHHH--HCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCC
Q ss_conf 8677999999479985398---78889889999999983--369907996228833599999999982999995688279
Q 003557 592 KRSDYGLPEDKFIFACFNQ---LYKMDPEIFNTWCNILR--RVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDV 666 (811)
Q Consensus 592 ~r~~~gl~~~~~~~~~~~~---~~K~~~~~~~~~~~il~--~~p~~~l~~~~~~~~~~~~l~~~~~~~gi~~~rv~f~~~ 666 (811)
.++++|++++ .+|..++| ..|+.+.+++++..+.+ ..|+.+|+++|.|+.......+.+... . .+.+.+.|.
T Consensus 23 ~~~~~~l~~~-~~il~~Grl~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~-~-~~~~~~~~~ 99 (196)
T d2bfwa1 23 LLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEK-H-GNVKVITEM 99 (196)
T ss_dssp HHHHTTCCSC-EEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHHH-C-TTEEEECSC
T ss_pred HHHHHCCCCC-CEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHC-C-CEEEEEEEC
T ss_conf 9999597999-889997688811049999999988641125788818999961355213454332211-3-115775302
Q ss_pred CCHHHHHHHCCCCCEEECCCCCCC-HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC--CCHHHHHHHHH
Q ss_conf 890889986077718716989998-067999877289844236886511015899885599986443--79989999999
Q 003557 667 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAV 743 (811)
Q Consensus 667 ~~~~~~~~~~~~~Di~l~~~~~~~-~~t~~eal~~G~Pvvt~~g~~~~~~~~~~~l~~~g~~~~~v~--~~~~~~~~~~~ 743 (811)
.+.++...+|+.+|+++.|+.++| |++++|||++|+|||+........ ++. +-.. +++ .+.+++++.+.
T Consensus 100 ~~~~~l~~~~~~~di~v~ps~~e~~~~~~~Eam~~G~pvI~~~~~~~~e-----~i~--~~~g-~~~~~~~~~~l~~~i~ 171 (196)
T d2bfwa1 100 LSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRD-----IIT--NETG-ILVKAGDPGELANAIL 171 (196)
T ss_dssp CCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESCHHHHH-----HCC--TTTC-EEECTTCHHHHHHHHH
T ss_pred CCCCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCCE-----EEC--CCCE-EEECCCCHHHHHHHHH
T ss_conf 3321100001232334432221123322013331486046517885320-----102--8731-4678999999999999
Q ss_pred HHHC-CHHHHHHHHHHHHHHCCC
Q ss_conf 9840-999999999999941203
Q 003557 744 SLAL-DRQKLQALTNKLKSVRLT 765 (811)
Q Consensus 744 ~l~~-d~~~~~~~~~~~~~~~~~ 765 (811)
+++. +++.+..+++..|++...
T Consensus 172 ~~l~~~~~~~~~~~~~a~~~a~~ 194 (196)
T d2bfwa1 172 KALELSRSDLSKFRENCKKRAMS 194 (196)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99957999999999999999983
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=4.9e-13 Score=98.21 Aligned_cols=128 Identities=20% Similarity=0.173 Sum_probs=72.4
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCH
Q ss_conf 79999997299479999999998206899067877999999839999999999999802999999999999999990998
Q 003557 198 NLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRV 277 (811)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 277 (811)
+.|..+...|++++|+..|.+ ..+.++.+++++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++
T Consensus 10 ~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 10 NEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHH---CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 999999987799999999986---48988999999999999858914678789999998552346678899999854249
Q ss_pred HHHHHHHHHHHHCCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999821999----------------39999999999996799899999999999609999
Q 003557 278 TDAIQDYIRAITIRPT----------------MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 328 (811)
Q Consensus 278 ~~A~~~~~~al~~~p~----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 328 (811)
++|+..|++++...+. ..++++++|.++...|++++|.+.+++++++.|+.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999986726736789986654363058899999999999789999999999998369980
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.3e-12 Score=95.54 Aligned_cols=88 Identities=15% Similarity=0.153 Sum_probs=33.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99999991999999999999997299939999999999998299899999999998409999799999999999849958
Q 003557 30 LGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ 109 (811)
Q Consensus 30 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 109 (811)
.|..+...|++++|++.|.++ .+.++.+++.+|.++..+|++++|+..|+++++++|+++.++.++|.++..+|+++
T Consensus 11 ~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 11 EGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHC---CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 999999877999999999864---89889999999999998589146787899999985523466788999998542499
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999995
Q 003557 110 EAIMCYQRAVQ 120 (811)
Q Consensus 110 ~A~~~~~~al~ 120 (811)
+|+..|++++.
T Consensus 88 ~A~~~~~kAl~ 98 (192)
T d1hh8a_ 88 LAIKDLKEALI 98 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.55 E-value=4.9e-11 Score=85.17 Aligned_cols=230 Identities=18% Similarity=0.228 Sum_probs=112.1
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 989999999999991999999999999997299939999999999998----2998999999999984099997999999
Q 003557 23 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME----SGDLNRALQYYKEAVKLKPTFPDAYLNL 98 (811)
Q Consensus 23 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l 98 (811)
++.+++.+|..+...+++++|+..|+++.+. .+..++..+|.+|.. ..++..|..+++.+.... ++.+...+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCC--CCCHHHCC
T ss_conf 9899999999999877999999999999978--9999999999999809996056999987501222111--11123135
Q ss_pred HHHHHH----CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 999998----499589999999999509986688769999999----299899999999999709995999999999999
Q 003557 99 GNVYKA----LGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYE----RGQADMAILYYKQAIGCDPRFLEAYNNLGNALK 170 (811)
Q Consensus 99 a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 170 (811)
+..+.. ..+.+.|...++.+.+..+ ......++..+.. ......+...+.+... +.....+..++..+.
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~-~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~ 153 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKY-AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYD 153 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHC
T ss_conf 01224321121236779888765543214-668876343323787331015778887555200--111010445555640
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----CCCHHHH
Q ss_conf 869989999999999960999868998799999972994799999999982068990678779999998----3999999
Q 003557 171 DVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ----QGNYADA 246 (811)
Q Consensus 171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A 246 (811)
.... ...+...+..+++.+.+ ..+..+.+.+|.++.. ..++++|
T Consensus 154 ~~~~------------------------------~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A 201 (265)
T d1ouva_ 154 AGRG------------------------------TPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEA 201 (265)
T ss_dssp HTSS------------------------------SCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred CCCC------------------------------CCCCCCCCHHHHHCCCC--CCCCCCCCCHHHHCCCCCCCCCCHHHH
T ss_conf 6887------------------------------43342200012211323--222233221131212676543103444
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHCCCC
Q ss_conf 999999980299999999999999999----09989999999999821999
Q 003557 247 ISCYNEVLRIDPLAADGLVNRGNTYKE----IGRVTDAIQDYIRAITIRPT 293 (811)
Q Consensus 247 ~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~ 293 (811)
+.+|+++.+. .++.+++.+|.+|.. ..++++|.++|+++......
T Consensus 202 ~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 202 LARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHHCC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCH
T ss_conf 5467665303--689999999999983999761899999999999987699
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=7.4e-13 Score=97.03 Aligned_cols=112 Identities=21% Similarity=0.266 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 78779999998399999999999998029999999999999999909989999999999821999399999999999967
Q 003557 229 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 308 (811)
Q Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 308 (811)
.+...|..+++.|+|++|+..|+++++.+|++..+|..+|.++...|++++|+..|+++++.+|++..++..+|.++..+
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 99999999999589999999866021100011333245678887405421288889999987544668779999999994
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99899999999999609999689987998742
Q 003557 309 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340 (811)
Q Consensus 309 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 340 (811)
|++++|+..++++++++|++..+...+..+..
T Consensus 92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~ 123 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPHDKDAKMKYQECNK 123 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999999899998729997999999999999
|
| >d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Trehalose-6-phosphate synthase, OtsA domain: Trehalose-6-phosphate synthase, OtsA species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=2.4e-13 Score=100.20 Aligned_cols=172 Identities=14% Similarity=0.119 Sum_probs=127.1
Q ss_pred CCCEEEEECCCC--CCCCHHHHHHHHHHHHHCCC----EEEEEECCCHHH----H----HHHH-------HHHHHCCCCC
Q ss_conf 994799853987--88898899999999833699----079962288335----9----9999-------9999829999
Q 003557 600 EDKFIFACFNQL--YKMDPEIFNTWCNILRRVPN----SALWLLRFPAAG----E----MRLR-------AYAVAQGVQP 658 (811)
Q Consensus 600 ~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~----~----~~l~-------~~~~~~gi~~ 658 (811)
.+..++++++|. .|+.+..+++|.+++++.|+ ..|++++.|+.. . ..+. ..+...|. .
T Consensus 252 ~~~~~il~V~Rld~~KGi~~~l~A~~~~l~~~p~~~~~v~lv~~~~~~~~~~~~~~~~~~ev~~lv~~in~~~~~~~~-~ 330 (456)
T d1uqta_ 252 KNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGW-T 330 (456)
T ss_dssp TTCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTB-C
T ss_pred CCCEEEEEECCCCHHHCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-C
T ss_conf 898599993787432065899999999987584314618999974875345688999999999999998765212798-7
Q ss_pred CCEEECCCCCHHHHHHHCCCCCEEECCCCCCC-HHHHHHHHHHCCC-----CCCCCCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 95688279890889986077718716989998-0679998772898-----44236886511015899885599986443
Q 003557 659 DQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLP-----MITLPLEKMATRVAGSLCLATGLGEEMIV 732 (811)
Q Consensus 659 ~rv~f~~~~~~~~~~~~~~~~Di~l~~~~~~~-~~t~~eal~~G~P-----vvt~~g~~~~~~~~~~~l~~~g~~~~~v~ 732 (811)
+.+.+.+..+..+..++|..+|+++.|+-.+| |++.+|||+||+| ||...-...+..++ +. ++.
T Consensus 331 ~~v~~~~~~~~~~l~a~~~~Adv~v~~s~~EG~~lv~~Ea~a~~~p~~~g~lIlS~~~G~~~~l~---------~g-~lV 400 (456)
T d1uqta_ 331 PLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT---------SA-LIV 400 (456)
T ss_dssp SEEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTCT---------TS-EEE
T ss_pred CEEECCCCCCHHHHHHHHHHHCEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCHHHHC---------CE-EEE
T ss_conf 50211587678887677753054525876578883999999908988897589728978778859---------76-998
Q ss_pred --CCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf --799899999999840-99999999999994120399999688999999999999
Q 003557 733 --NSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKM 785 (811)
Q Consensus 733 --~~~~~~~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~ 785 (811)
.|.+++++++.++++ +++.++.+.+++++.+.. +|...|++.+.+.++++
T Consensus 401 nP~d~~~~A~ai~~aL~~~~~er~~~~~~~~~~v~~---~~~~~W~~~fl~~l~~~ 453 (456)
T d1uqta_ 401 NPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVK---NDINHWQECFISDLKQI 453 (456)
T ss_dssp CTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHH
T ss_conf 959999999999999749999999999999899997---89999999999998755
|
| >d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: First mannosyl transferase WbaZ species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.51 E-value=8.9e-14 Score=102.99 Aligned_cols=156 Identities=13% Similarity=0.105 Sum_probs=111.6
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHH--HHHHHHHHHHCCCCCCCEEECCCCCH
Q ss_conf 8677999999479985398788898899999999833699079962288335--99999999982999995688279890
Q 003557 592 KRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG--EMRLRAYAVAQGVQPDQIIFTDVAMK 669 (811)
Q Consensus 592 ~r~~~gl~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~--~~~l~~~~~~~gi~~~rv~f~~~~~~ 669 (811)
.|-+++..+++++|.+--.+.|+.+.+++++. ..|+.+|+++|.++.. ...+.+.+.+.+ .++|+|+|.++.
T Consensus 4 ~~~~~~~~~~~~l~iGrl~~~K~~~~~i~a~~----~l~~~~l~ivg~~~~~~~~~~~~~~~~~~~--~~~v~~~g~~~~ 77 (166)
T d2f9fa1 4 SKFKFKCYGDFWLSVNRIYPEKRIELQLEVFK----KLQDEKLYIVGWFSKGDHAERYARKIMKIA--PDNVKFLGSVSE 77 (166)
T ss_dssp TTCCCCCCCSCEEEECCSSGGGTHHHHHHHHH----HCTTSCEEEEBCCCTTSTHHHHHHHHHHHS--CTTEEEEESCCH
T ss_pred CCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH----HHCCCEEEEEEECCCCCCHHHHHHHHCCCC--CCCEEEEECCCC
T ss_conf 35246899999999923754349999999999----833974999972244542233332202356--675887421221
Q ss_pred HHHHHHCCCCCEEECCCCCCC-HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 889986077718716989998-0679998772898442368865110158998855999864437998999999998409
Q 003557 670 QEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALD 748 (811)
Q Consensus 670 ~~~~~~~~~~Di~l~~~~~~~-~~t~~eal~~G~Pvvt~~g~~~~~~~~~~~l~~~g~~~~~v~~~~~~~~~~~~~l~~d 748 (811)
++....|..+|+++.|+.++| |.+.+|||++|+|||+.+.......+. . +....++..|.+++++.+.++..|
T Consensus 78 ~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~~~g~pvi~s~~~~~~e~i~-----~-~~~g~~~~~d~~~~~~~i~~l~~~ 151 (166)
T d2f9fa1 78 EELIDLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVI-----N-EKTGYLVNADVNEIIDAMKKVSKN 151 (166)
T ss_dssp HHHHHHHHHCSEEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCC-----B-TTTEEEECSCHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEC-----C-CCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 1122222222223321221123322110112233220552786403304-----8-841246899999999999999809
Q ss_pred HHH-HHHHHHHH
Q ss_conf 999-99999999
Q 003557 749 RQK-LQALTNKL 759 (811)
Q Consensus 749 ~~~-~~~~~~~~ 759 (811)
++. ++.++++.
T Consensus 152 ~~~~~~~~~~~a 163 (166)
T d2f9fa1 152 PDKFKKDCFRRA 163 (166)
T ss_dssp TTTTHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999998
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.51 E-value=1.3e-13 Score=102.02 Aligned_cols=100 Identities=24% Similarity=0.250 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 89999999999991999999999999997299939999999999998299899999999998409999799999999999
Q 003557 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 103 (811)
Q Consensus 24 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 103 (811)
+..+...|..++..|+|++|+..|++++..+|.++.+|..+|.+|...|++++|+..|+++++++|++..+|..+|.+|.
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~ 83 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999999999986999999999999998599989999817898741000001247888888718873899999999999
Q ss_pred HCCCHHHHHHHHHHHHHHCC
Q ss_conf 84995899999999995099
Q 003557 104 ALGMPQEAIMCYQRAVQTRP 123 (811)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p 123 (811)
.+|++++|+..|+++++..|
T Consensus 84 ~l~~~~~A~~~~~~al~l~p 103 (201)
T d2c2la1 84 EMESYDEAIANLQRAYSLAK 103 (201)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCC
T ss_conf 87999999999999987495
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2.2e-12 Score=93.91 Aligned_cols=97 Identities=16% Similarity=0.335 Sum_probs=32.4
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 99972994799999999982068990678779999998399999999999998029999999999999999909989999
Q 003557 202 IYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAI 281 (811)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 281 (811)
.++..|++++|+..|+++++.+|.+...+.++|.++...|++++|+..|+++++.+|.+..++..+|.++..+|++++|+
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~ 98 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 98 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 99995899999998660211000113332456788874054212888899999875446687799999999949999999
Q ss_pred HHHHHHHHCCCCCHHHH
Q ss_conf 99999982199939999
Q 003557 282 QDYIRAITIRPTMAEAH 298 (811)
Q Consensus 282 ~~~~~al~~~p~~~~~~ 298 (811)
..+++++.++|++..++
T Consensus 99 ~~~~~a~~~~p~~~~~~ 115 (159)
T d1a17a_ 99 RDYETVVKVKPHDKDAK 115 (159)
T ss_dssp HHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHCCCCCHHHH
T ss_conf 98999987299979999
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.1e-12 Score=95.86 Aligned_cols=109 Identities=22% Similarity=0.357 Sum_probs=84.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 87799999983999999999999980299999999999999999099899999999998219993999999999999679
Q 003557 230 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 309 (811)
Q Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 309 (811)
+...|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++++|+++.+++.+|.++..+|
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 99999999996999999999999886199601343000110110000112100134677740220267788999999812
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 98999999999996099996899879987
Q 003557 310 HVEAAIKSYKQALLLRPDFPEATCNLLHT 338 (811)
Q Consensus 310 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 338 (811)
++++|+..|+++++++|+++.++.++..+
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 79999999999998498989999999978
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.49 E-value=3.9e-13 Score=98.84 Aligned_cols=99 Identities=21% Similarity=0.300 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 78779999998399999999999998029999999999999999909989999999999821999399999999999967
Q 003557 229 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 308 (811)
Q Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 308 (811)
.+...|..++..|++++|+..|+++++.+|.++.+|.++|.+|...|++++|+..|+++++++|++..+|+++|.+|..+
T Consensus 6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l 85 (201)
T d2c2la1 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 85 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 99999999998699999999999999859998999981789874100000124788888871887389999999999987
Q ss_pred CCHHHHHHHHHHHHHCCCC
Q ss_conf 9989999999999960999
Q 003557 309 GHVEAAIKSYKQALLLRPD 327 (811)
Q Consensus 309 g~~~~A~~~~~~al~~~p~ 327 (811)
|++++|+..|+++++++|+
T Consensus 86 ~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 86 ESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999874955
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=5.5e-12 Score=91.34 Aligned_cols=93 Identities=25% Similarity=0.438 Sum_probs=30.8
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99999919999999999999972999399999999999982998999999999984099997999999999998499589
Q 003557 31 GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQE 110 (811)
Q Consensus 31 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 110 (811)
|..++..|++++|+..|.++++.+|.++.+|..+|.++...|++++|+..+.++++.+|+++.+++.+|.++..+|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH
T ss_conf 99999969999999999998861996013430001101100001121001346777402202677889999998127999
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999995099
Q 003557 111 AIMCYQRAVQTRP 123 (811)
Q Consensus 111 A~~~~~~al~~~p 123 (811)
|+..|+++++.+|
T Consensus 90 A~~~~~~a~~~~p 102 (117)
T d1elwa_ 90 AKRTYEEGLKHEA 102 (117)
T ss_dssp HHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999998498
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=2e-11 Score=87.71 Aligned_cols=82 Identities=16% Similarity=0.144 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999999999099899999999998219993999999999999679989999999999960999968998799874212
Q 003557 263 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCV 342 (811)
Q Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 342 (811)
++.++|.+|.+.|++++|+..+++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|++..+...+..+....
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999999886421101100000001002231034677799998722299999999999972989899999999999999
Q ss_pred CC
Q ss_conf 77
Q 003557 343 CS 344 (811)
Q Consensus 343 ~~ 344 (811)
..
T Consensus 144 ~~ 145 (170)
T d1p5qa1 144 RR 145 (170)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=5.5e-11 Score=84.84 Aligned_cols=135 Identities=19% Similarity=0.212 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 99999999998699899999999999609998689987999999729947999999999820689906787799999983
Q 003557 161 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 240 (811)
Q Consensus 161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 240 (811)
.+...|..++..|++++|+..|++++...+.......... .....+ ...++.++|.+|.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~----------~~~~~~---------~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA----------QKAQAL---------RLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHH----------HHHHHH---------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHH----------HHHCHH---------HHHHHHHHHHHHHHH
T ss_conf 9999999999969999999999999887510100035777----------640646---------799999999998864
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99999999999998029999999999999999909989999999999821999399999999999967998999
Q 003557 241 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAA 314 (811)
Q Consensus 241 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 314 (811)
|++++|+..++++++.+|.++.+++.+|.++..+|++++|+..|+++++++|++..+...++.+....++..+.
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 21101100000001002231034677799998722299999999999972989899999999999999999999
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.34 E-value=1.2e-10 Score=82.58 Aligned_cols=82 Identities=13% Similarity=0.132 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999909989999999999821999399999999999967998999999999996099996899879987421
Q 003557 262 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQC 341 (811)
Q Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 341 (811)
.++.++|.++..+|++++|+..++++++++|++..+++.+|.++..+|++++|+..|+++++++|++..+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99984999987762201100022322201310488999889999882789999999999998598989999999999999
Q ss_pred CC
Q ss_conf 27
Q 003557 342 VC 343 (811)
Q Consensus 342 ~~ 343 (811)
..
T Consensus 145 ~~ 146 (168)
T d1kt1a1 145 AK 146 (168)
T ss_dssp HH
T ss_pred HH
T ss_conf 98
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.34 E-value=2.6e-11 Score=86.96 Aligned_cols=86 Identities=20% Similarity=0.288 Sum_probs=60.0
Q ss_pred CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 29999999999999999909989999999999821999399999999999967998999999999996099996899879
Q 003557 256 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335 (811)
Q Consensus 256 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 335 (811)
..|.....+.++|.++.++|++++|+..++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..+...+
T Consensus 72 ~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l 151 (169)
T d1ihga1 72 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 151 (169)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 19023999998999998640210136665544310002236777699999980479999999999998598999999999
Q ss_pred HHHHHH
Q ss_conf 987421
Q 003557 336 LHTLQC 341 (811)
Q Consensus 336 ~~~~~~ 341 (811)
..+...
T Consensus 152 ~~~~~~ 157 (169)
T d1ihga1 152 LKVKQK 157 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.30 E-value=4.6e-11 Score=85.34 Aligned_cols=134 Identities=19% Similarity=0.220 Sum_probs=75.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99999999869989999999999960999868998799999972994799999999982068990678779999998399
Q 003557 163 NNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242 (811)
Q Consensus 163 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~ 242 (811)
...|..+...|++++|+..|.++++..+.. .+...........|.....+.++|.++.+.|+
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~ 92 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGS------------------RAAAEDADGAKLQPVALSCVLNIGACKLKMSD 92 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------HHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999088999999999998741111------------------66665577877190239999989999986402
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 999999999998029999999999999999909989999999999821999399999999999967998999
Q 003557 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAA 314 (811)
Q Consensus 243 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 314 (811)
+++|+..++++++++|.++.+++.+|.++..+|++++|+..|+++++++|++..+...++.+........++
T Consensus 93 ~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 93 WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 101366655443100022367776999999804799999999999985989999999999999999989999
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.30 E-value=8.3e-11 Score=83.69 Aligned_cols=77 Identities=18% Similarity=0.139 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99999999999099899999999998219993999999999999679989999999999960999968998799874
Q 003557 263 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 339 (811)
Q Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 339 (811)
++.++|.+|..+|++++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99619999998465301110100010000000124677689999968999999999999982989899999999999
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.28 E-value=2.3e-10 Score=80.81 Aligned_cols=93 Identities=22% Similarity=0.400 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 78779999998399999999999998029999999999999999909989999999999821999399999999999967
Q 003557 229 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 308 (811)
Q Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 308 (811)
.+.++|.+|..+|++++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++++|++..+...++.+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99849999877622011000223222013104889998899998827899999999999985989899999999999999
Q ss_pred CCHH-HHHHHHHHH
Q ss_conf 9989-999999999
Q 003557 309 GHVE-AAIKSYKQA 321 (811)
Q Consensus 309 g~~~-~A~~~~~~a 321 (811)
+... ...+.+.++
T Consensus 146 ~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 146 KEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 86999999999999
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.24 E-value=2.9e-10 Score=80.20 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 78779999998399999999999998029999999999999999909989999999999821999399999999999967
Q 003557 229 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 308 (811)
Q Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 308 (811)
.+.++|.+|.++|++++|+..++++++.+|.+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+..++
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl 148 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 148 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99619999998465301110100010000000124677689999968999999999999982989899999999999999
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.21 E-value=1.8e-10 Score=81.50 Aligned_cols=91 Identities=21% Similarity=0.176 Sum_probs=40.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 77999999839999999999999802999999999999999990998999999999982199939999999999996799
Q 003557 231 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGH 310 (811)
Q Consensus 231 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 310 (811)
+.+|..+.+.|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++++|++..++..+|.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 99999999876058999988610112111100123354564101258774100000111111000003789999999789
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999999
Q 003557 311 VEAAIKSYKQA 321 (811)
Q Consensus 311 ~~~A~~~~~~a 321 (811)
+++|++.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.21 E-value=1.4e-10 Score=82.16 Aligned_cols=93 Identities=16% Similarity=0.049 Sum_probs=54.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999999991999999999999997299939999999999998299899999999998409999799999999999849
Q 003557 27 HSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 106 (811)
Q Consensus 27 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 106 (811)
.+.+|..+...|++++|+..|++++..+|+++.+|..+|.++...+++++|+..++++++.+|++..++..+|.+|...|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 99999999987605899998861011211110012335456410125877410000011111100000378999999978
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 9589999999999
Q 003557 107 MPQEAIMCYQRAV 119 (811)
Q Consensus 107 ~~~~A~~~~~~al 119 (811)
++++|++.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 9999999999981
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=6.7e-11 Score=84.29 Aligned_cols=108 Identities=8% Similarity=-0.069 Sum_probs=77.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHCCCCC--HHHHHHHHHHH
Q ss_conf 77999999839999999999999802999999999999999990---99899999999998219993--99999999999
Q 003557 231 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI---GRVTDAIQDYIRAITIRPTM--AEAHANLASAY 305 (811)
Q Consensus 231 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~ 305 (811)
..++..+...+++++|.+.|++++..+|.++.+++++|.++... +++++|+..+++++..+|.. ..+++++|.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 77988736999999999999998832999899999999999985126789999999999986069931999999999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 967998999999999996099996899879987
Q 003557 306 KDSGHVEAAIKSYKQALLLRPDFPEATCNLLHT 338 (811)
Q Consensus 306 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 338 (811)
...|++++|+.+|+++++++|++..+...+..+
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 997316999999999997690989999999999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.19 E-value=7.7e-11 Score=83.93 Aligned_cols=29 Identities=24% Similarity=0.184 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 89999999999960999968998799874
Q 003557 311 VEAAIKSYKQALLLRPDFPEATCNLLHTL 339 (811)
Q Consensus 311 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 339 (811)
+++|.++|+++++++|++..++.++....
T Consensus 102 ~~~A~~~~~kal~l~P~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 102 FDLATQFFQQAVDEQPDNTHYLKSLEMTA 130 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 78763121100025988899999999999
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=5.9e-10 Score=78.16 Aligned_cols=98 Identities=18% Similarity=0.250 Sum_probs=52.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCH-------HHHHHHH
Q ss_conf 877999999839999999999999802999999999999999990998999999999982199939-------9999999
Q 003557 230 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMA-------EAHANLA 302 (811)
Q Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la 302 (811)
+..+|..++..|+|++|+.+|+++++.+|.+..++.++|.++...|++++|+..++++++++|.+. .++..+|
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999985999999999999988496458999868899988186077899999999868012788988999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 9999679989999999999960999
Q 003557 303 SAYKDSGHVEAAIKSYKQALLLRPD 327 (811)
Q Consensus 303 ~~~~~~g~~~~A~~~~~~al~~~p~ 327 (811)
.++...+++++|+.+|++++..+++
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHCCHHHHHHHHHHHHHCCCC
T ss_conf 9999938899999999999845999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.13 E-value=1.5e-10 Score=82.07 Aligned_cols=26 Identities=19% Similarity=0.135 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99999999998219993999999999
Q 003557 278 TDAIQDYIRAITIRPTMAEAHANLAS 303 (811)
Q Consensus 278 ~~A~~~~~~al~~~p~~~~~~~~la~ 303 (811)
++|.++|+++++++|++..++..++.
T Consensus 103 ~~A~~~~~kal~l~P~~~~~~~~L~~ 128 (145)
T d1zu2a1 103 DLATQFFQQAVDEQPDNTHYLKSLEM 128 (145)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 87631211000259888999999999
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=8.4e-10 Score=77.17 Aligned_cols=65 Identities=23% Similarity=0.309 Sum_probs=28.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999991999999999999997299939999999999998299899999999998409999
Q 003557 27 HSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 91 (811)
Q Consensus 27 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 91 (811)
+..+|..++..|+|++|+.+|.++++.+|++..++..+|.+|..+|++++|+..++++++.+|.+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~ 71 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99999999985999999999999988496458999868899988186077899999999868012
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=4.5e-10 Score=78.91 Aligned_cols=39 Identities=8% Similarity=-0.043 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 999999999990998999999999982199939999999
Q 003557 263 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 301 (811)
Q Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 301 (811)
+++.+|.+|...|++++|+++|+++++++|++..+...+
T Consensus 74 ~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~ 112 (122)
T d1nzna_ 74 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 112 (122)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 999999999997316999999999997690989999999
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.99 E-value=1.3e-09 Score=76.00 Aligned_cols=127 Identities=12% Similarity=-0.040 Sum_probs=57.2
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 97299479999999998206899067877999999839999999999999802999999999999999990998999999
Q 003557 204 MEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQD 283 (811)
Q Consensus 204 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 283 (811)
+..|++++|+..++++++.+|.+...+..++.++...|++++|+..++++++.+|++...+..++.++...+..+++...
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~ 86 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQG 86 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 88889999999999999978999999999999999879999999999999986997389999999999834663789987
Q ss_pred HHHHHH-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 999982-19993999999999999679989999999999960999968
Q 003557 284 YIRAIT-IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 330 (811)
Q Consensus 284 ~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 330 (811)
..+... ..|.....+...+..+...|+.++|...++++.+..|..+.
T Consensus 87 ~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~ 134 (264)
T d1zbpa1 87 AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134 (264)
T ss_dssp CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 544420358647999999999999679989999999999833999981
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.89 E-value=3.2e-09 Score=73.43 Aligned_cols=124 Identities=12% Similarity=0.072 Sum_probs=91.9
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99998399999999999998029999999999999999909989999999999821999399999999999967998999
Q 003557 235 VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAA 314 (811)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 314 (811)
.-....|++++|+..++++++.+|.+...+..++.++...|++++|+..++++++++|++...+..++.++...+..+++
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf 99988889999999999999978999999999999999879999999999999986997389999999999834663789
Q ss_pred HHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9999999960-9999689987998742127745675789999999
Q 003557 315 IKSYKQALLL-RPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 358 (811)
Q Consensus 315 ~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l 358 (811)
...+.+.... .|.........+......|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 987544420358647999999999999679989999999999833
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.76 E-value=1.1e-08 Score=69.92 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-------C----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999990998999999999982199-------9----3999999999999679989999999999960999
Q 003557 262 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRP-------T----MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 327 (811)
Q Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 327 (811)
.++.++|.+|..+|++++|+..+++++++.+ + ...+++++|.+|..+|++++|+..|++++++.|.
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999828630015766435530431002455443112787752699999888888889999999986687
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.74 E-value=3.1e-08 Score=67.01 Aligned_cols=13 Identities=31% Similarity=0.176 Sum_probs=4.0
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 9999999999999
Q 003557 38 GLVQEAYSCYLEA 50 (811)
Q Consensus 38 g~~~~A~~~~~~a 50 (811)
|+|++|+..|+++
T Consensus 23 g~y~~Ai~~y~~A 35 (156)
T d2hr2a1 23 GEYDEAAANCRRA 35 (156)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
T ss_conf 9999999999999
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=6.6e-08 Score=64.86 Aligned_cols=79 Identities=18% Similarity=0.074 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 99999999999990998999999999982199-------93999999999999679989999999999960999968998
Q 003557 261 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP-------TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATC 333 (811)
Q Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 333 (811)
++..+.+|.++.+.|++.+|+.+|+++++..| +...++.++|.++.+.|++++|+.+++++++++|+++.+..
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999999997799999999999999886530147647899998726888657739888788779886929799999
Q ss_pred HHHHHH
Q ss_conf 799874
Q 003557 334 NLLHTL 339 (811)
Q Consensus 334 ~l~~~~ 339 (811)
|+....
T Consensus 85 Nl~~~~ 90 (95)
T d1tjca_ 85 NLKYFE 90 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.68 E-value=2.2e-07 Score=61.48 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999679989999999999960999968998799874212774567578999999999974
Q 003557 295 AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQV 363 (811)
Q Consensus 295 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l~~~~~ 363 (811)
..++..++.++...|++++|+..++++++.+|.+..++..++.++...|++.+|...|+++.+.+.+.+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eL 135 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDL 135 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999998879905789999999984985199999999999985579999999999999989984
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.66 E-value=1.9e-06 Score=55.43 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999999999909989999999999821999399999999999967998999999999996
Q 003557 260 AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 323 (811)
Q Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 323 (811)
...++..++.++...|++++|+..++++++.+|.+..+|..++.++...|++.+|+..|+++..
T Consensus 66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 66 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 9999999999998879905789999999984985199999999999985579999999999999
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=2.7e-07 Score=60.85 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 999999999990998999999999982199939999999
Q 003557 263 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 301 (811)
Q Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 301 (811)
++.++|.++.+.|++++|+..++++++++|++..++.++
T Consensus 48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 48 VLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 999872688865773988878877988692979999999
|
| >d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: UDP glucose:flavonoid 3-o-glucosyltransferase species: Grape (Vitis vinifera) [TaxId: 29760]
Probab=98.27 E-value=6.8e-05 Score=45.28 Aligned_cols=144 Identities=12% Similarity=0.072 Sum_probs=95.9
Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHCCCC
Q ss_conf 99479985398788898899999999833699079962288335999999999829999956882798908899860777
Q 003557 600 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 679 (811)
Q Consensus 600 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~gi~~~rv~f~~~~~~~~~~~~~~~~ 679 (811)
...+++.+++.........++.....+...+...+|..+... ...+-.... ..+ .++|.+..+.+..+.+. ...+
T Consensus 264 ~~~~v~~s~gs~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~--~~~l~~~~~-~~~-~~nv~~~~~~pq~~lL~-hp~~ 338 (450)
T d2c1xa1 264 PTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKA--RVHLPEGFL-EKT-RGYGMVVPWAPQAEVLA-HEAV 338 (450)
T ss_dssp TTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGG--GGGSCTTHH-HHH-TTTEEEESCCCHHHHHT-STTE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCC--CCCCCHHHH-HHC-CCCCCCCCCCCHHHHHC-CCCE
T ss_conf 642144214435568999999999999844880899977775--344870344-422-35401554678376652-6741
Q ss_pred CEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC---CCHHHHHHHHHHHHCCHHHH
Q ss_conf 18716989998067999877289844236886511015899885599986443---79989999999984099999
Q 003557 680 DLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKL 752 (811)
Q Consensus 680 Di~l~~~~~~~~~t~~eal~~G~Pvvt~~g~~~~~~~~~~~l~~~g~~~~~v~---~~~~~~~~~~~~l~~d~~~~ 752 (811)
|+|+ ..+|.+|+.||++.|||+|+++-..=--..+.-+-...|+.- .+. -+.++..+++.++++|+..+
T Consensus 339 ~~fI---tHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~-~l~~~~~t~~~l~~ai~~vL~d~~y~ 410 (450)
T d2c1xa1 339 GAFV---THCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGV-RIEGGVFTKSGLMSCFDQILSQEKGK 410 (450)
T ss_dssp EEEE---ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEE-ECGGGSCCHHHHHHHHHHHHHSHHHH
T ss_pred EEEE---CCCCCCHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCEE-EECCCCCCHHHHHHHHHHHHCCCHHH
T ss_conf 6997---068830799999859998963540000899999999709089-80389838999999999996194799
|
| >d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-vancosaminyltransferase GftD species: Amycolatopsis orientalis [TaxId: 31958]
Probab=98.21 E-value=6.1e-05 Score=45.59 Aligned_cols=157 Identities=10% Similarity=0.009 Sum_probs=93.0
Q ss_pred CEEEEECCCCCCC-CHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHCCCCC
Q ss_conf 4799853987888-988999999998336990799622883359999999998299999568827989088998607771
Q 003557 602 KFIFACFNQLYKM-DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 680 (811)
Q Consensus 602 ~~~~~~~~~~~K~-~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~gi~~~rv~f~~~~~~~~~~~~~~~~D 680 (811)
.++|.+++..... .....+.....+...|...++..+.... . ...+ +++|.+.++.|..+.+ ..+|
T Consensus 238 ~~v~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~-~~~v~~~~~~p~~~ll---~~~~ 304 (401)
T d1rrva_ 238 PPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTEL-V--------LPDD-RDDCFAIDEVNFQALF---RRVA 304 (401)
T ss_dssp CCEEECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTC-C--------CSCC-CTTEEEESSCCHHHHG---GGSS
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCC-C--------CCCC-CCCEEEEECCCCHHHH---HHCC
T ss_conf 839998786445788999999999986269748995054434-5--------5457-8988997314817776---2124
Q ss_pred EEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC---CCHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 8716989998067999877289844236886511015899885599986443---7998999999998409999999999
Q 003557 681 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQALTN 757 (811)
Q Consensus 681 i~l~~~~~~~~~t~~eal~~G~Pvvt~~g~~~~~~~~~~~l~~~g~~~~~v~---~~~~~~~~~~~~l~~d~~~~~~~~~ 757 (811)
+|+ ..+|.+|+.||+++|+|+|..+-..- -..-+..+...|..- .+. -+.+...+.+.++. |++.++..+
T Consensus 305 ~~I---~hgG~~t~~Eal~~GvP~l~~P~~~D-Q~~na~~v~~~G~g~-~l~~~~~~~~~L~~ai~~vl-~~~~r~~a~- 377 (401)
T d1rrva_ 305 AVI---HHGSAGTEHVATRAGVPQLVIPRNTD-QPYFAGRVAALGIGV-AHDGPTPTFESLSAALTTVL-APETRARAE- 377 (401)
T ss_dssp EEE---ECCCHHHHHHHHHHTCCEEECCCSBT-HHHHHHHHHHHTSEE-ECSSSCCCHHHHHHHHHHHT-SHHHHHHHH-
T ss_pred EEE---ECCCCHHHHHHHHHCCCEEEECCCCC-HHHHHHHHHHCCCEE-ECCCCCCCHHHHHHHHHHHH-CHHHHHHHH-
T ss_conf 888---61772489999983999898066120-899999999879889-75747899999999999984-979999999-
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 999412039999968899999999
Q 003557 758 KLKSVRLTCPLFDTARWVKNLERS 781 (811)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~e~~ 781 (811)
.+.++.. .-...+.++.+|+.
T Consensus 378 ~~~~~~~---~~g~~~aa~~ie~~ 398 (401)
T d1rrva_ 378 AVAGMVL---TDGAAAAADLVLAA 398 (401)
T ss_dssp HHTTTCC---CCHHHHHHHHHHHH
T ss_pred HHHHHHH---HCCHHHHHHHHHHH
T ss_conf 9999875---51799999999998
|
| >d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: (Iso)flavonoid glycosyltransferase species: Medicago truncatula [TaxId: 3880]
Probab=98.20 E-value=3.1e-05 Score=47.49 Aligned_cols=144 Identities=15% Similarity=0.197 Sum_probs=96.5
Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHH--HHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHCC
Q ss_conf 99479985398788898899999999833699079962288335--9999999998299999568827989088998607
Q 003557 600 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG--EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS 677 (811)
Q Consensus 600 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~--~~~l~~~~~~~gi~~~rv~f~~~~~~~~~~~~~~ 677 (811)
...+++.+.+...............++++.+...+|..+..... ...+...... .. .++|.+..+.|..+.+.. .
T Consensus 287 ~~~~v~~~~gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~-~~Nv~~~~~~Pq~~lL~h-p 363 (473)
T d2pq6a1 287 PGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTN-EI-ADRGLIASWCPQDKVLNH-P 363 (473)
T ss_dssp TTCEEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEECCGGGSTTTGGGSCHHHHH-HH-TTTEEEESCCCHHHHHTS-T
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHH-HC-CCCEEEEEECCHHHHHCC-C
T ss_conf 88603313575335548999999999986697399998168765521037620002-21-476688630887999647-7
Q ss_pred CCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC--CCHHHHHHHHHHHHCCHH
Q ss_conf 7718716989998067999877289844236886511015899885599986443--799899999999840999
Q 003557 678 LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQ 750 (811)
Q Consensus 678 ~~Di~l~~~~~~~~~t~~eal~~G~Pvvt~~g~~~~~~~~~~~l~~~g~~~~~v~--~~~~~~~~~~~~l~~d~~ 750 (811)
.+++|+ +.+|.+|+.||++.|||.|.++--.=--..+.-+-...|+.- .+. -+.++..+.+.++++|+.
T Consensus 364 ~~~~fI---tHGG~~s~~Eal~~GVP~lv~P~~~DQ~~na~rv~~~~G~G~-~l~~~~t~~~l~~ai~~vl~d~~ 434 (473)
T d2pq6a1 364 SIGGFL---THCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGM-EIDTNVKREELAKLINEVIAGDK 434 (473)
T ss_dssp TEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEE-ECCSSCCHHHHHHHHHHHHTSHH
T ss_pred CCCEEE---ECCCCCHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHCCEEE-EECCCCCHHHHHHHHHHHHCCCH
T ss_conf 675999---568840899999859998965641121889999999717378-61897389999999999976976
|
| >d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-epi-vancosaminyltransferase GtfA species: Amycolatopsis orientalis [TaxId: 31958]
Probab=98.16 E-value=6.5e-05 Score=45.39 Aligned_cols=160 Identities=9% Similarity=0.012 Sum_probs=93.3
Q ss_pred CCEEEEECCCCC-CCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHCCCC
Q ss_conf 947998539878-8898899999999833699079962288335999999999829999956882798908899860777
Q 003557 601 DKFIFACFNQLY-KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 679 (811)
Q Consensus 601 ~~~~~~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~gi~~~rv~f~~~~~~~~~~~~~~~~ 679 (811)
..+++.+++... +....+.......+...+...++..+.. . . ..... .++|.+.++.+..+.+ ..+
T Consensus 221 ~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~-~-------~~~~~-~~~v~i~~~~p~~~ll---~~a 287 (391)
T d1pn3a_ 221 STPVYVGFGSSSRPATADAAKMAIKAVRASGRRIVLSRGWA-D-L-------VLPDD-GADCFVVGEVNLQELF---GRV 287 (391)
T ss_dssp SCCEEEECTTCCSTHHHHHHHHHHHHHHHTTCCEEEECTTT-T-C-------CCSSC-CTTCCEESSCCHHHHH---TTS
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCC-C-C-------CCCCC-CCCEEEECCCCHHHHH---HHC
T ss_conf 97278722431223278999999999985697799943643-3-3-------44568-8988995446879998---425
Q ss_pred CEEECCCCCCCHHHHHHHHHHCCCCCCCCC--CCCC-CCHHHHHHHHCCCCCCCCC---CCHHHHHHHHHHHHCCHHHHH
Q ss_conf 187169899980679998772898442368--8651-1015899885599986443---799899999999840999999
Q 003557 680 DLFLDTPLCNAHTTGTDILWAGLPMITLPL--EKMA-TRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQ 753 (811)
Q Consensus 680 Di~l~~~~~~~~~t~~eal~~G~Pvvt~~g--~~~~-~~~~~~~l~~~g~~~~~v~---~~~~~~~~~~~~l~~d~~~~~ 753 (811)
|+|+ ..+|.+|++|||++|+|+|..+- +... -..-+..+...|..- .+. -+.++..+.+.++.+| +.++
T Consensus 288 ~~~v---~hgG~~t~~Eal~~G~P~v~~P~~~d~~~eQ~~nA~~l~~~G~g~-~l~~~~~~~~~l~~~i~~~l~~-~~r~ 362 (391)
T d1pn3a_ 288 AAAI---HHDSAGTTLLAMRAGIPQIVVRRVVDNVVEQAYHADRVAELGVGV-AVDGPVPTIDSLSAALDTALAP-EIRA 362 (391)
T ss_dssp SCEE---EESCHHHHHHHHHHTCCEEEECSSCCBTTBCCHHHHHHHHHTSEE-EECCSSCCHHHHHHHHHHHTST-THHH
T ss_pred CEEE---ECCCHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHCCCEE-ECCCCCCCHHHHHHHHHHHHCH-HHHH
T ss_conf 4898---527437999999828868993355677452999999999879889-7685789999999999998399-9999
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999994120399999688999999999
Q 003557 754 ALTNKLKSVRLTCPLFDTARWVKNLERSY 782 (811)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 782 (811)
..+ .+++... .-...+.++.+|+..
T Consensus 363 ~a~-~~a~~~~---~~g~~~aa~~i~~~l 387 (391)
T d1pn3a_ 363 RAT-TVADTIR---ADGTTVAAQLLFDAV 387 (391)
T ss_dssp HHH-HHGGGSC---SCHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHH---HCCHHHHHHHHHHHH
T ss_conf 999-9999988---527999999999998
|
| >d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: UDP-glucosyltransferase GtfB species: Amycolatopsis orientalis [TaxId: 31958]
Probab=98.13 E-value=6.6e-05 Score=45.38 Aligned_cols=157 Identities=11% Similarity=0.003 Sum_probs=94.0
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHCCCCCE
Q ss_conf 47998539878889889999999983369907996228833599999999982999995688279890889986077718
Q 003557 602 KFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADL 681 (811)
Q Consensus 602 ~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~gi~~~rv~f~~~~~~~~~~~~~~~~Di 681 (811)
.+++.+++... .....++.....+...+....+..+.... ..... +++|++.++.+..+.+ ..+|+
T Consensus 239 ~~i~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~~~~~~~~---------~~~~~-~~nv~~~~~~p~~~~l---~~~~~ 304 (401)
T d1iira_ 239 PPVYLGFGSLG-APADAVRVAIDAIRAHGRRVILSRGWADL---------VLPDD-GADCFAIGEVNHQVLF---GRVAA 304 (401)
T ss_dssp CCEEEECC----CCHHHHHHHHHHHHHTTCCEEECTTCTTC---------CCSSC-GGGEEECSSCCHHHHG---GGSSE
T ss_pred CEEEECCCCCC-CCHHHHHHHHHHHHHCCCEEEEECCCCCC---------CCCCC-CCCEEEEECCCHHHHH---HHCCE
T ss_conf 75997157546-65689999999999769807984267764---------23357-8978997025879999---54589
Q ss_pred EECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC---CCHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 716989998067999877289844236886511015899885599986443---79989999999984099999999999
Q 003557 682 FLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQALTNK 758 (811)
Q Consensus 682 ~l~~~~~~~~~t~~eal~~G~Pvvt~~g~~~~~~~~~~~l~~~g~~~~~v~---~~~~~~~~~~~~l~~d~~~~~~~~~~ 758 (811)
|+ ..+|.+|+.|||+.|+|+|.++-..- ...-+..+...|..- .+. -+.++..+.+.++++ ++.++..++-
T Consensus 305 ~V---~hgG~~t~~Eal~~GvP~v~~P~~~D-Q~~na~~l~~~G~g~-~l~~~~~~~~~l~~ai~~~l~-~~~~~~a~~~ 378 (401)
T d1iira_ 305 VI---HHGGAGTTHVAARAGAPQILLPQMAD-QPYYAGRVAELGVGV-AHDGPIPTFDSLSAALATALT-PETHARATAV 378 (401)
T ss_dssp EE---ECCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHHHTSEE-ECSSSSCCHHHHHHHHHHHTS-HHHHHHHHHH
T ss_pred EE---ECCCCHHHHHHHHHCCCEEECCCCCC-HHHHHHHHHHCCCEE-ECCCCCCCHHHHHHHHHHHHC-HHHHHHHHHH
T ss_conf 99---63771699999981999998066141-799999999879888-768478999999999999969-7999999999
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 994120399999688999999999
Q 003557 759 LKSVRLTCPLFDTARWVKNLERSY 782 (811)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~e~~y 782 (811)
.++... -+...-++.+++..
T Consensus 379 -~~~~~~---~~~~~aa~~i~~~i 398 (401)
T d1iira_ 379 -AGTIRT---DGAAVAARLLLDAV 398 (401)
T ss_dssp -HHHSCS---CHHHHHHHHHHHHH
T ss_pred -HHHHHH---CCHHHHHHHHHHHH
T ss_conf -999875---08399999999998
|
| >d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: Hydroquinone glucosyltransferase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.99 E-value=0.00038 Score=40.39 Aligned_cols=143 Identities=15% Similarity=0.116 Sum_probs=92.3
Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHH--------------HHHHHHHHHCCCCCCCEEECC
Q ss_conf 994799853987888988999999998336990799622883359--------------999999998299999568827
Q 003557 600 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGE--------------MRLRAYAVAQGVQPDQIIFTD 665 (811)
Q Consensus 600 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~--------------~~l~~~~~~~gi~~~rv~f~~ 665 (811)
...+++.+++......+..+......+...+...++..+...... ..+-.-+..... ++.|++.+
T Consensus 262 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~ 340 (471)
T d2vcha1 262 LGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTK-KRGFVIPF 340 (471)
T ss_dssp TTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHHHTT-TTEEEEES
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHCC-CCCEEECC
T ss_conf 75442002565447898999999987786068769985366665531001344442034317802566516-78755216
Q ss_pred CCCHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCC--CCCCCCHHHHHHHHCCCCCCCC--C----CCHHH
Q ss_conf 98908899860777187169899980679998772898442368--8651101589988559998644--3----79989
Q 003557 666 VAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPL--EKMATRVAGSLCLATGLGEEMI--V----NSMKE 737 (811)
Q Consensus 666 ~~~~~~~~~~~~~~Di~l~~~~~~~~~t~~eal~~G~Pvvt~~g--~~~~~~~~~~~l~~~g~~~~~v--~----~~~~~ 737 (811)
+.|..+.++. ..+++|+ +.+|.+|+.||++.|||+|.++- |.+ ..+.-+...+|+.- .+ . -+.++
T Consensus 341 w~Pq~~lL~h-p~~~~fV---tHGG~gS~~EAl~~GvP~v~~P~~~DQ~--~nA~rv~e~lG~Gv-~l~~~~~~~~t~~~ 413 (471)
T d2vcha1 341 WAPQAQVLAH-PSTGGFL---THCGWNSTLESVVSGIPLIAWPLYAEQK--MNAVLLSEDIRAAL-RPRAGDDGLVRREE 413 (471)
T ss_dssp CCCHHHHHHS-TTEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTTHH--HHHHHHHHTTCCEE-CCCCCTTSCCCHHH
T ss_pred CCCHHHHHCC-CCCCEEE---ECCCCCHHHHHHHCCCCEEECCCCCCCH--HHHHHHHHHHEEEE-EEECCCCCCCCHHH
T ss_conf 5789998657-6578897---0688428999998599989714401228--89999999720489-97248788697999
Q ss_pred HHHHHHHHHCCHH
Q ss_conf 9999999840999
Q 003557 738 YEERAVSLALDRQ 750 (811)
Q Consensus 738 ~~~~~~~l~~d~~ 750 (811)
..+++.++.+|++
T Consensus 414 l~~ai~~vl~~~~ 426 (471)
T d2vcha1 414 VARVVKGLMEGEE 426 (471)
T ss_dssp HHHHHHHHHTSTH
T ss_pred HHHHHHHHHCCCH
T ss_conf 9999999967947
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.89 E-value=0.00041 Score=40.19 Aligned_cols=81 Identities=16% Similarity=0.162 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----CCCHH
Q ss_conf 999999999999980299999999999999999----0998999999999982199939999999999996----79989
Q 003557 241 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKE----IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD----SGHVE 312 (811)
Q Consensus 241 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~ 312 (811)
.+.++|+.+++++.+. .++.+.+.+|.+|.. ..++++|+++|+++.+. .++.+.+.||.+|.. ..+.+
T Consensus 37 ~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~ 112 (133)
T d1klxa_ 37 INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEK 112 (133)
T ss_dssp SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHCCCCCCCCHH
T ss_conf 3899999987654113--312555567875330135310357888887500025--740677899999982984677899
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999999609
Q 003557 313 AAIKSYKQALLLR 325 (811)
Q Consensus 313 ~A~~~~~~al~~~ 325 (811)
+|..+|+++.+..
T Consensus 113 ~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 113 QAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999999878
|
| >d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=97.88 E-value=0.00028 Score=41.31 Aligned_cols=321 Identities=13% Similarity=0.103 Sum_probs=166.7
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHCCCCCC-CEEEEEEECCCCCCHHHHHHHHHCCC-CEEECC--CC--CH--------
Q ss_conf 412755328879973676589985025898-76999986379999079999974059-358789--99--99--------
Q 003557 425 RLRVGYVSSDFGNHPLSHLMGSVFGMHNKE-NVEVFCYALSPNDGTEWRQRTQSEAE-HFVDVS--AM--SS-------- 490 (811)
Q Consensus 425 ~~rig~~s~~~~~h~~~~~~~~l~~~~d~~-~fei~~y~~~~~~~~~~~~~~~~~~~-~~~~~~--~~--~~-------- 490 (811)
+++|.++.+ .-|-.-.+.|++..+++. +|++.+..++...+ .....+..... .-.++. .- +.
T Consensus 2 k~Ki~~v~G---tR~e~~kl~pli~~l~~~~~~~~~li~tG~H~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i 77 (377)
T d1o6ca_ 2 KLKVMTVFG---TRPEAIKMAPLVLELKKYPEIDSYVTVTAQHRQ-MLDQVLDAFHIKPDFDLNIMKERQTLAEITSNAL 77 (377)
T ss_dssp CEEEEEEEC---SHHHHHHHHHHHHHGGGCTTEEEEEEECCSCGG-GTHHHHHHTTCCCSEECCCCCTTCCHHHHHHHHH
T ss_pred CCEEEEEEE---CHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHH-HHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 846999997---058599999999999718999879999379889-9999985168777535443889988999999999
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCHHHHHC------CCCCEEEECCCCCCCCC---CCCCCE-------EEECCCCCC
Q ss_conf 99999987189729993787777850112101------89844881233688778---996438-------972575489
Q 003557 491 DMIAKLINEDKIQILINLNGYTKGARNEIFAM------QPAPIQVSYMGFPGTTG---ASYIDY-------LVTDEFVSP 554 (811)
Q Consensus 491 ~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~------r~Apvq~~~~g~~~t~g---~~~~dy-------~~~d~~~~~ 554 (811)
..+.+.+...++|+++ ..|.|...++. .--||.-.--|.. || .+.+|= -++|-+.++
T Consensus 78 ~~~~~~~~~~kpD~v~-----v~GDr~e~la~a~aa~~~~Ipi~HiegG~~--s~~~~~~~~de~~R~~iskls~~hf~~ 150 (377)
T d1o6ca_ 78 VRLDELFKDIKPDIVL-----VHGDTTTTFAGSLAAFYHQIAVGHVEAGLR--TGNKYSPFPEELNRQMTGAIADLHFAP 150 (377)
T ss_dssp HHHHHHHHHHCCSEEE-----EETTCHHHHHHHHHHHHTTCEEEEESCCCC--CSCTTTTTTHHHHHHHHHHHCSEEEES
T ss_pred HHHHHHHHHCCCCEEE-----EEECCCCCCHHHHHHHHCCCEEEEEECCCC--CCCCCCCCCHHHHCCCCCCCEEEEEEC
T ss_conf 8505666533665367-----640345430156665311422799951456--543323471455400356530488632
Q ss_pred CCCCCCCCCCEEEC--CCCCCCCCCCC-CC--CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC---CHHHHHHHHHHH
Q ss_conf 67778873125776--98533479965-55--567899999886779999994799853987888---988999999998
Q 003557 555 LRYAHIYSEKLVHV--PHCYFVNDYKQ-KN--MDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKM---DPEIFNTWCNIL 626 (811)
Q Consensus 555 ~~~~~~~~e~~~~l--p~~~~~~~~~~-~~--~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~K~---~~~~~~~~~~il 626 (811)
.+.. .+++.++ +...+.+.+.+ .+ .... ...........+..+.+++.++.|..-. ....+.....++
T Consensus 151 t~~~---~~~L~~~G~~~~~I~~vG~~~~D~i~~~~-~~~~~~~~~~~~~~~~~ilvt~Hr~~~~~~~~~~~~~~~~~~~ 226 (377)
T d1o6ca_ 151 TGQA---KDNLLKENKKADSIFVTGNTAIDALNTTV-RDGYSHPVLDQVGEDKMILLTAHRRENLGEPMENMFKAIRRIV 226 (377)
T ss_dssp SHHH---HHHHHHTTCCGGGEEECCCHHHHHHHHHC-CSSCCCSTTTTTTTSEEEEECC----------HHHHHHHHHHH
T ss_pred CHHH---HHHHHHHCCCCCEEEECCCHHHHHHHHHH-HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHC
T ss_conf 3466---63443303445427523420678888777-7777533344305784499983231014663378999987521
Q ss_pred HHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 33699079962288335999999999829999956882798908899860777187169899980679998772898442
Q 003557 627 RRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMIT 706 (811)
Q Consensus 627 ~~~p~~~l~~~~~~~~~~~~l~~~~~~~gi~~~rv~f~~~~~~~~~~~~~~~~Di~l~~~~~~~~~t~~eal~~G~Pvvt 706 (811)
...++..++....+ .........+.-...++|.+.+..++.+++..+..+++++ -++|....||-++|+|||+
T Consensus 227 ~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~ni~~~~~l~~~~fl~llk~s~~vI----gnSss~i~Ea~~lg~P~In 299 (377)
T d1o6ca_ 227 GEFEDVQVVYPVHL---NPVVREAAHKHFGDSDRVHLIEPLEVIDFHNFAAKSHFIL----TDSGGVQEEAPSLGKPVLV 299 (377)
T ss_dssp HHCTTEEEEEC-------CHHHHHHHHC--CCSSEEECCCCCHHHHHHHHHHCSEEE----EC--CHHHHGGGGTCCEEE
T ss_pred CCCCCCCCCCCCCC---CCCCCHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHEEE----CCCCHHHHHHHHHHCEEEE
T ss_conf 23355653234552---1132112210134565147513213688999986422564----1640467766665414898
Q ss_pred CCCCC--CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 36886--51101589988559998644379989999999984099999999999994120399999688999999999
Q 003557 707 LPLEK--MATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 782 (811)
Q Consensus 707 ~~g~~--~~~~~~~~~l~~~g~~~~~v~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 782 (811)
+...+ ..++.. |..- ++..+.++..+.+..+..|+.....+.. . ..|..|. ..+.++.+..
T Consensus 300 ir~~tERqe~~~~-------g~ni-lv~~~~~~I~~~i~~~l~~~~~~~~~~~----~--~npYGdG-~as~rI~~~L 362 (377)
T d1o6ca_ 300 LRDTTERPEGVEA-------GTLK-LAGTDEENIYQLAKQLLTDPDEYKKMSQ----A--SNPYGDG-EASRRIVEEL 362 (377)
T ss_dssp ECSCCC---CTTT-------TSSE-EECSCHHHHHHHHHHHHHCHHHHHHHHH----C--CCTTCCS-CHHHHHHHHH
T ss_pred ECCCCCCCCHHHC-------CEEE-ECCCCHHHHHHHHHHHHHCHHHHHHHCC----C--CCCCCCC-HHHHHHHHHH
T ss_conf 0788758220006-------8059-8789999999999999749687763065----8--8989898-2999999999
|
| >d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Peptidoglycan biosynthesis glycosyltransferase MurG domain: Peptidoglycan biosynthesis glycosyltransferase MurG species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=0.0006 Score=39.12 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHHCCCEEEEE-ECCCHHHHHHHHHHHHHCCCCCCCEEECCCCC-HHHHHHHCCCCCEEECCCCCCCHH
Q ss_conf 9889999999983369907996-22883359999999998299999568827989-088998607771871698999806
Q 003557 615 DPEIFNTWCNILRRVPNSALWL-LRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAM-KQEHIRRSSLADLFLDTPLCNAHT 692 (811)
Q Consensus 615 ~~~~~~~~~~il~~~p~~~l~~-~~~~~~~~~~l~~~~~~~gi~~~rv~f~~~~~-~~~~~~~~~~~Di~l~~~~~~~~~ 692 (811)
.....+.+...+...+.....+ .+............. ... ...+...+..+ ..+. +..+|+++. .+|++
T Consensus 189 ~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~--~~~-~~~~~v~~f~~~~~~l---m~~adl~It---~~G~~ 259 (351)
T d1f0ka_ 189 ARILNQTMPQVAAKLGDSVTIWHQSGKGSQQSVEQAYA--EAG-QPQHKVTEFIDDMAAA---YAWADVVVC---RSGAL 259 (351)
T ss_dssp CHHHHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHH--HTT-CTTSEEESCCSCHHHH---HHHCSEEEE---CCCHH
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHC--CCC-CCCCEEEEEHHHHHHH---HHHCCHHHC---CCCCH
T ss_conf 34668888876665245530454213410444334320--233-2231555430558999---974742220---55423
Q ss_pred HHHHHHHHCCCCCCCCCCCCC--CCHHHHHHHHCCCCCCCCCC---CHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 799987728984423688651--10158998855999864437---9989999999984099999999999994120399
Q 003557 693 TGTDILWAGLPMITLPLEKMA--TRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQALTNKLKSVRLTCP 767 (811)
Q Consensus 693 t~~eal~~G~Pvvt~~g~~~~--~~~~~~~l~~~g~~~~~v~~---~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~ 767 (811)
|+.|++.+|+|+|..+-.... ...-+..+...|..- .+.. +.+...+.+..+ +++.+.+|++++++.. .+
T Consensus 260 T~~Eal~~g~P~I~iP~~~~~~~Q~~NA~~l~~~G~~~-~~~~~~~~~e~l~~~l~~l--~~~~~~~~~~~~~~~~--~~ 334 (351)
T d1f0ka_ 260 TVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAAK-IIEQPQLSVDAVANTLAGW--SRETLLTMAERARAAS--IP 334 (351)
T ss_dssp HHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTTSEE-ECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHTC--CT
T ss_pred HHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCEE-EECHHHCCHHHHHHHHHHH--CHHHHHHHHHHHHCCC--CC
T ss_conf 77888871785465415467766999999999889989-9223319999999999863--9999999999987269--95
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 999688999999999
Q 003557 768 LFDTARWVKNLERSY 782 (811)
Q Consensus 768 ~~~~~~~~~~~e~~y 782 (811)
-.+++.++.++++-
T Consensus 335 -~~a~~i~~~i~~l~ 348 (351)
T d1f0ka_ 335 -DATERVANEVSRVA 348 (351)
T ss_dssp -THHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHH
T ss_conf -69999999999998
|
| >d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Thermus thermophilus [TaxId: 274]
Probab=97.82 E-value=0.00054 Score=39.45 Aligned_cols=305 Identities=13% Similarity=0.097 Sum_probs=162.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHCCCCCC-CEEEEEEECCCCCCHHHHHHHHHCC---CCEEECC--CCC--------HHH
Q ss_conf 2755328879973676589985025898-7699998637999907999997405---9358789--999--------999
Q 003557 427 RVGYVSSDFGNHPLSHLMGSVFGMHNKE-NVEVFCYALSPNDGTEWRQRTQSEA---EHFVDVS--AMS--------SDM 492 (811)
Q Consensus 427 rig~~s~~~~~h~~~~~~~~l~~~~d~~-~fei~~y~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~--------~~~ 492 (811)
||.++.+ .-|-.-.+.|++..+++. +|++.++.++..-+ ...+.+.... +....+. ..+ ...
T Consensus 4 kI~~v~G---tR~e~~kl~pli~~l~~~~~~~~~li~tG~H~~-~~~~~~~~~~i~~d~~l~~~~~~~s~~~~~~~~~~~ 79 (373)
T d1v4va_ 4 RVVLAFG---TRPEATKMAPVYLALRGIPGLKPLVLLTGQHRE-QLRQALSLFGIQEDRNLDVMQERQALPDLAARILPQ 79 (373)
T ss_dssp EEEEEEC---SHHHHHHHHHHHHHHHTSTTEEEEEEECSSCHH-HHHHHHHTTTCCCSEECCCCSSCCCHHHHHHHHHHH
T ss_pred EEEEEEE---HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHH-HHHCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 6999987---369799999999999718999889999268825-563712240888665678788888778999999998
Q ss_pred HHHHHHHCCCEEEEECCCCCCCCCHHHHHC------CCCCEEEECCCCC---CCCCCCCCCE-----EEECCCCCCCCCC
Q ss_conf 999987189729993787777850112101------8984488123368---8778996438-----9725754896777
Q 003557 493 IAKLINEDKIQILINLNGYTKGARNEIFAM------QPAPIQVSYMGFP---GTTGASYIDY-----LVTDEFVSPLRYA 558 (811)
Q Consensus 493 ~~~~i~~~~~dil~~~~~~~~~~~~~~~~~------r~Apvq~~~~g~~---~t~g~~~~dy-----~~~d~~~~~~~~~ 558 (811)
+.+.+...++|+++ ..|.|...++. .--||.=.--|.. .+.|+|.=-. -+++-+.++....
T Consensus 80 ~~~~l~~~kPD~vl-----v~GDr~e~la~a~aa~~~~ipi~HiegG~rsg~~~~~~~de~~R~~iskls~~hf~~t~~~ 154 (373)
T d1v4va_ 80 AARALKEMGADYVL-----VHGDTLTTFAVAWAAFLEGIPVGHVEAGLRSGNLKEPFPEEANRRLTDVLTDLDFAPTPLA 154 (373)
T ss_dssp HHHHHHHTTCSEEE-----EESSCHHHHHHHHHHHHTTCCEEEETCCCCCSCTTSSTTHHHHHHHHHHHCSEEEESSHHH
T ss_pred HHHHHHHCCCCCCC-----CCCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCHHH
T ss_conf 76666403764001-----1136753103778898762122241343455433567616666655223443255122156
Q ss_pred CCCCCCEEEC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC--CCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 8873125776--98533479965555678999998867799999947998539878--8898899999999833699079
Q 003557 559 HIYSEKLVHV--PHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPNSAL 634 (811)
Q Consensus 559 ~~~~e~~~~l--p~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l 634 (811)
.+++..+ +...+...+.+....+. ......+...+++++.+++.++.|.. +.......+...+....++..+
T Consensus 155 ---~~~L~~~Ge~~~~I~~vG~p~~D~i~-~~~~~~~~~~~~~~~~~~lvt~hr~~n~~~~~~~~~~~~~~~~~~~~~~~ 230 (373)
T d1v4va_ 155 ---KANLLKEGKREEGILVTGQTGVDAVL-LAAKLGRLPEGLPEGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTF 230 (373)
T ss_dssp ---HHHHHTTTCCGGGEEECCCHHHHHHH-HHHHHCCCCTTCCSSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEE
T ss_pred ---HHHHHHHCCCCCCEEECCCCHHHHHH-HHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf ---66666630454213442662155777-65431100022344553168842655531278999999998653356503
Q ss_pred EEECCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 96228833599999999982999995688279890889986077718716989998067999877289844236886511
Q 003557 635 WLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMAT 714 (811)
Q Consensus 635 ~~~~~~~~~~~~l~~~~~~~gi~~~rv~f~~~~~~~~~~~~~~~~Di~l~~~~~~~~~t~~eal~~G~Pvvt~~g~~~~~ 714 (811)
++...+.. ... ......... ..++.+....++.+++..+..+++++ -++|....||.++|+|||+....+ +
T Consensus 231 i~p~~~~~-~~~-~~~~~~~~~-~~n~~~~~~l~~~~~l~ll~~s~~vi----gnSssgi~Ea~~lg~P~Inir~~~--e 301 (373)
T d1v4va_ 231 VYPVHLNP-VVR-EAVFPVLKG-VRNFVLLDPLEYGSMAALMRASLLLV----TDSGGLQEEGAALGVPVVVLRNVT--E 301 (373)
T ss_dssp EEECCSCH-HHH-HHHHHHHTT-CTTEEEECCCCHHHHHHHHHTEEEEE----ESCHHHHHHHHHTTCCEEECSSSC--S
T ss_pred EEEECCCC-CCH-HHHHHHHCC-CCCCEEECCCHHHHHHHHHHHCEEEE----CCCCHHHHCCHHHCCCEEEECCCC--C
T ss_conf 56403422-210-355554303-33200111000788888764301685----064122220032058689848876--6
Q ss_pred CHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 0158998855999864437998999999998409999999999
Q 003557 715 RVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTN 757 (811)
Q Consensus 715 ~~~~~~l~~~g~~~~~v~~~~~~~~~~~~~l~~d~~~~~~~~~ 757 (811)
|.-. +. .|..- ++..+.++..+.+..+..++..+..+..
T Consensus 302 Rqeg--~~-~g~nv-lv~~d~~~I~~~i~~~l~~~~~~~~~~~ 340 (373)
T d1v4va_ 302 RPEG--LK-AGILK-LAGTDPEGVYRVVKGLLENPEELSRMRK 340 (373)
T ss_dssp CHHH--HH-HTSEE-ECCSCHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHH--HH-CCEEE-ECCCCHHHHHHHHHHHHCCHHHHHHCCC
T ss_conf 9878--96-29049-7589999999999999719898864024
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.61 E-value=0.00051 Score=39.58 Aligned_cols=73 Identities=7% Similarity=-0.091 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 9999999999999909---9899999999998219993-99999999999967998999999999996099996899
Q 003557 260 AADGLVNRGNTYKEIG---RVTDAIQDYIRAITIRPTM-AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 332 (811)
Q Consensus 260 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 332 (811)
...+.+..|+++.+.. +..+++..++++++.+|.. .+.++.+|..|.++|++++|..+++++++++|++..+.
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 81019999999982796889999999999998549505999999999999987329999999999982399849999
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.56 E-value=0.00093 Score=37.88 Aligned_cols=73 Identities=8% Similarity=-0.086 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 67877999999839---99999999999980299999-999999999999099899999999998219993999999
Q 003557 228 APFNNLAVIYKQQG---NYADAISCYNEVLRIDPLAA-DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN 300 (811)
Q Consensus 228 ~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 300 (811)
.+.+.+|+++.+.. +.++++.+++++++.+|... +.++.+|..+.++|++++|..+++++++++|++..+...
T Consensus 36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 01999999998279688999999999999854950599999999999998732999999999998239984999999
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.36 E-value=0.0031 Score=34.47 Aligned_cols=142 Identities=14% Similarity=0.169 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999999999199999999999999729993999999999999829989999999999840999979999999999984
Q 003557 26 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 105 (811)
Q Consensus 26 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 105 (811)
-.-..|..+.+.|.|+.|...|... . -+..+..++...++++.|.+.+.+. ++...|......+...
T Consensus 16 d~~~i~~~c~~~~lye~A~~lY~~~----~----d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~ 82 (336)
T d1b89a_ 16 HIQQVGDRCYDEKMYDAAKLLYNNV----S----NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDG 82 (336)
T ss_dssp -------------CTTTHHHHHHHT----T----CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHC----C----CHHHHHHHHHHHCCHHHHHHHHHHC-----CCHHHHHHHHHHHHHC
T ss_conf 8999999998787799999999867----8----9999999997031599999999880-----8899999999999727
Q ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9958999999999950998668876999999929989999999999970999599999999999986998999999999
Q 003557 106 GMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 184 (811)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 184 (811)
....-+... . ......+.........|...|.+++.+.+++..+...+.....+..++.+|.+.+ .++-.+.++.
T Consensus 83 ~e~~la~i~-~--~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~ 157 (336)
T d1b89a_ 83 KEFRLAQMC-G--LHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLEL 157 (336)
T ss_dssp TCHHHHHHT-T--TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred CHHHHHHHH-H--HHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC-HHHHHHHHHH
T ss_conf 287899999-9--8753578878999999987698599999999997577444679999999999869-4999999986
|
| >d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: Triterpene UDP-glucosyl transferase UGT71G1 species: Medicago truncatula [TaxId: 3880]
Probab=97.26 E-value=0.004 Score=33.75 Aligned_cols=153 Identities=15% Similarity=0.166 Sum_probs=88.6
Q ss_pred CCEEEEECC-CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHH-HHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHCCC
Q ss_conf 947998539-8788898899999999833699079962288335-99999999982999995688279890889986077
Q 003557 601 DKFIFACFN-QLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG-EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 678 (811)
Q Consensus 601 ~~~~~~~~~-~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-~~~l~~~~~~~gi~~~rv~f~~~~~~~~~~~~~~~ 678 (811)
..+++.++. ......+..+......+...+...+|..+..... ...+.... .+ ++.+.+..+.+..+.+ .+..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~n~~v~~~~pq~~~l-~~p~ 348 (461)
T d2acva1 274 KSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWM---EL-EGKGMICGWAPQVEVL-AHKA 348 (461)
T ss_dssp TCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCCGGGSCTTHHHHH---HH-HCSEEEESSCCHHHHH-HSTT
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHH---CC-CCCEEEEECCCHHHHH-HCCC
T ss_conf 53034521344357999999999999985376079984045455886303331---25-7873898518778888-5565
Q ss_pred CCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC---------CCCHHHHHHHHHHHHCC-
Q ss_conf 71871698999806799987728984423688651101589988559998644---------37998999999998409-
Q 003557 679 ADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI---------VNSMKEYEERAVSLALD- 748 (811)
Q Consensus 679 ~Di~l~~~~~~~~~t~~eal~~G~Pvvt~~g~~~~~~~~~~~l~~~g~~~~~v---------~~~~~~~~~~~~~l~~d- 748 (811)
+|+|+ ..+|.+|+.||++.|||+|.++--.=--..+.-+....|+.- .+ .-+.++..+.+.+++++
T Consensus 349 ~~~fI---tHGG~gs~~eAl~~GVP~l~~P~~~DQ~~nA~rlve~~G~G~-~l~~~~~~~~~~~t~~~l~~a~~~vl~~d 424 (461)
T d2acva1 349 IGGFV---SHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGL-GLRVDYRKGSDVVAAEEIEKGLKDLMDKD 424 (461)
T ss_dssp EEEEE---ECCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEE-ESCSSCCTTCCCCCHHHHHHHHHHHTCTT
T ss_pred CCEEE---ECCCCCHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCEE-EEECCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 77798---338844899999859998967760002889999999849367-84153113678547999999999996088
Q ss_pred HHHHHH---HHHHHHHH
Q ss_conf 999999---99999941
Q 003557 749 RQKLQA---LTNKLKSV 762 (811)
Q Consensus 749 ~~~~~~---~~~~~~~~ 762 (811)
+..|+. +++.+|+.
T Consensus 425 ~~~r~~a~~l~~~~r~a 441 (461)
T d2acva1 425 SIVHKKVQEMKEMSRNA 441 (461)
T ss_dssp CTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.99 E-value=0.0074 Score=32.04 Aligned_cols=116 Identities=8% Similarity=-0.135 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 299479999999998206899067877999----9998399999999999998029999999999999999909989999
Q 003557 206 WNMLPAAASYYKATLAVTTGLSAPFNNLAV----IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAI 281 (811)
Q Consensus 206 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~----~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 281 (811)
..+.+.|...+.......+.....+..... .+...+..+.+...+.................+ .....+++..+.
T Consensus 227 ~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~~ 305 (450)
T d1qsaa1 227 RQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGLN 305 (450)
T ss_dssp HHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHCCCHHHHH
T ss_conf 2485579999875212023567999999999999998768639999999860123466699999999-998829869999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999982199939999999999996799899999999999
Q 003557 282 QDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 322 (811)
Q Consensus 282 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 322 (811)
..+..+-..........+.+|..+...|+.++|...|..+.
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99986584624289999999999998398156899999984
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.34 E-value=0.021 Score=29.16 Aligned_cols=310 Identities=10% Similarity=-0.048 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH---HHHHHH
Q ss_conf 99999999999199999999999999729993999999999999829989999999999840999979999---999999
Q 003557 26 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYL---NLGNVY 102 (811)
Q Consensus 26 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~la~~~ 102 (811)
..+..+...+..|++.++.....+. +.+|-.+..-+............. .+...++.+|+.+.... .....+
T Consensus 8 ~~y~~a~~a~~~~~~~~~~~~~~~L-~dypL~pYl~~~~l~~~~~~~~~~----~i~~Fl~~~p~~P~~~~lr~~~l~~L 82 (450)
T d1qsaa1 8 SRYAQIKQAWDNRQMDVVEQMMPGL-KDYPLYPYLEYRQITDDLMNQPAV----TVTNFVRANPTLPPARTLQSRFVNEL 82 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSGGG-TTSTTHHHHHHHHHHHTGGGCCHH----HHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH-CCCCCHHHHHHHHHHHCCCCCCHH----HHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9999999999878989999998560-479877999999987351569999----99999987899822799999999998
Q ss_pred HHCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC------------------CCHHHHH
Q ss_conf 9849958999999999950998-66887699999992998999999999997099------------------9599999
Q 003557 103 KALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDP------------------RFLEAYN 163 (811)
Q Consensus 103 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------------------~~~~~~~ 163 (811)
...+++...+..+ ...|. .......+......|+.++|...+..+..... -....+.
T Consensus 83 ~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~ 158 (450)
T d1qsaa1 83 ARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYL 158 (450)
T ss_dssp HHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHCCCHHHHHHHC----CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 7656889999766----689999999999999998759848899999999854787835899999998744789899999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHC
Q ss_conf 9999999869989999999999960999868-99879999997299479999999998206899067--87799999983
Q 003557 164 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ-ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP--FNNLAVIYKQQ 240 (811)
Q Consensus 164 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~--~~~la~~~~~~ 240 (811)
.........|++..|...+.. .+.+.. .......+.. +........ ...+..... ....+......
T Consensus 159 ~R~~~~l~~~~~~~a~~l~~~----l~~~~~~~~~a~~~l~~---~p~~~~~~~----~~~~~~~~~~~~~~~~l~rla~ 227 (450)
T d1qsaa1 159 ERIRLAMKAGNTGLVTVLAGQ----MPADYQTIASAIISLAN---NPNTVLTFA----RTTGATDFTRQMAAVAFASVAR 227 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT----CCGGGHHHHHHHHHHHH---CGGGHHHHH----HHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH----CCHHHHHHHHHHHHHHH---CHHHHHHHH----HCCCCCHHHHHHHHHHHHHHHC
T ss_conf 999999886981569988751----78558999999999885---857588887----5378870111789999998742
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH----HHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 9999999999999802999999999999999----990998999999999982199939999999999996799899999
Q 003557 241 GNYADAISCYNEVLRIDPLAADGLVNRGNTY----KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 316 (811)
Q Consensus 241 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 316 (811)
.+.+.|...+.......+.....+....... ...+..+.+............+.......++ .....+++..+..
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~~~ 306 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGLNT 306 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHCCCHHHHHH
T ss_conf 485579999875212023567999999999999998768639999999860123466699999999-9988298699999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999996099996899879987421277456757899999
Q 003557 317 SYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVE 356 (811)
Q Consensus 317 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~ 356 (811)
.++.+-..........+-++..+...|+.++|...+..+.
T Consensus 307 ~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 307 WLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9986584624289999999999998398156899999984
|
| >d1pswa_ c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: ADP-heptose LPS heptosyltransferase II domain: ADP-heptose LPS heptosyltransferase II species: Escherichia coli [TaxId: 562]
Probab=96.10 E-value=0.013 Score=30.53 Aligned_cols=211 Identities=10% Similarity=-0.016 Sum_probs=99.7
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCC
Q ss_conf 99999987189729993787777850112101898448812336887789964389725754896777887312577698
Q 003557 491 DMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPH 570 (811)
Q Consensus 491 ~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~r~Apvq~~~~g~~~t~g~~~~dy~~~d~~~~~~~~~~~~~e~~~~lp~ 570 (811)
..+...++..++|+++++.+........ ..-.+|..+.+.+... .+.-. .....+.. ...+..++...+..
T Consensus 70 ~~l~~~l~~~~~D~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~ 140 (348)
T d1pswa_ 70 RKLGHSLREKRYDRAYVLPNSFKSALVP--LFAGIPHRTGWRGEMR-YGLLN-DVRVLDKE-----AWPLMVERYIALAY 140 (348)
T ss_dssp HHHHHHTTTTTCSEEEECSCCSGGGHHH--HHTTCSEEEEECTTTC-TTTCT-EEECCCTT-----TCCSHHHHHHHTTS
T ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHH--HHHCCCCCCCCCCCCC-CCCCC-CCCCCCCC-----CCHHHHHHHHHHHH
T ss_conf 6688886413432675225332114677--7632651123453333-45334-43323333-----42168899998887
Q ss_pred CCCCCC-CCCCCCCCCCCCC--CC-----CCCCCCCCCCC--EEEEECCC--CCCCCH-H-HHHHHHHHHHHCCCEEEEE
Q ss_conf 533479-9655556789999--98-----86779999994--79985398--788898-8-9999999983369907996
Q 003557 571 CYFVND-YKQKNMDVLDPNC--QP-----KRSDYGLPEDK--FIFACFNQ--LYKMDP-E-IFNTWCNILRRVPNSALWL 636 (811)
Q Consensus 571 ~~~~~~-~~~~~~~~~~~~~--~~-----~r~~~gl~~~~--~~~~~~~~--~~K~~~-~-~~~~~~~il~~~p~~~l~~ 636 (811)
...... ..........+.. .+ ....++++.+. +++...++ ..|.-| + +.++...+..+ +...++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~wp~~~~~~L~~~l~~~--~~~ivl 218 (348)
T d1pswa_ 141 DKGIMRTAQDLPQPLLWPQLQVSEGEKSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDE--GYQVVL 218 (348)
T ss_dssp CGGGCSSGGGSCSSCCCCCCCCCHHHHHHHHHHTTCCSSSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHT--TCEEEE
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCHHHCCCCCHHHHHHHHHHHHHC--CCCCCC
T ss_conf 642122223466533222456898999999987333557876995355322322164467776667777644--874222
Q ss_pred ECCCHHHHHHHHHHHHHCCC--CCCCEEECCCCCHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 22883359999999998299--9995688279890889986077718716989998067999877289844236886511
Q 003557 637 LRFPAAGEMRLRAYAVAQGV--QPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMAT 714 (811)
Q Consensus 637 ~~~~~~~~~~l~~~~~~~gi--~~~rv~f~~~~~~~~~~~~~~~~Di~l~~~~~~~~~t~~eal~~G~Pvvt~~g~~~~~ 714 (811)
.|.+.+ .+......+.... ...-+.+.|..+..+..+.+..+|+++.+. +..+--|.++|+|+|++-|.+-..
T Consensus 219 ~g~~~e-~~~~~~~~~~~~~~~~~~~~~l~g~~sl~el~~li~~a~l~I~~D----tg~~HlAaa~g~p~i~lfg~~~~~ 293 (348)
T d1pswa_ 219 FGSAKD-HEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTND----SGLMHVAAALNRPLVALYGPSSPD 293 (348)
T ss_dssp CCCGGG-HHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEES----SHHHHHHHHTTCCEEEEESSSCTT
T ss_pred CCCCCH-HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEECC----CCHHHHHHHCCCCEEEEECCCCHH
T ss_conf 444105-999888887631014653335557743788999874330576158----608899998299989997899875
Q ss_pred CHH
Q ss_conf 015
Q 003557 715 RVA 717 (811)
Q Consensus 715 ~~~ 717 (811)
+.+
T Consensus 294 ~~~ 296 (348)
T d1pswa_ 294 FTP 296 (348)
T ss_dssp SSC
T ss_pred HHC
T ss_conf 608
|
| >d1f6da_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Escherichia coli [TaxId: 562]
Probab=96.06 E-value=0.028 Score=28.24 Aligned_cols=303 Identities=13% Similarity=0.077 Sum_probs=145.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHCCCCCC-CEEEEEEECCCCCCHHHHHHHHHCC---CCEEECC--CCCH--------HH
Q ss_conf 2755328879973676589985025898-7699998637999907999997405---9358789--9999--------99
Q 003557 427 RVGYVSSDFGNHPLSHLMGSVFGMHNKE-NVEVFCYALSPNDGTEWRQRTQSEA---EHFVDVS--AMSS--------DM 492 (811)
Q Consensus 427 rig~~s~~~~~h~~~~~~~~l~~~~d~~-~fei~~y~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~--------~~ 492 (811)
||.++.+ .-|-.-.+.|++..+.++ +|++.+..++...+ ...+-++... +....+. ..+. ..
T Consensus 2 Ki~~v~G---tR~e~~kl~pli~~l~~~~~~~~~li~tG~H~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 77 (376)
T d1f6da_ 2 KVLTVFG---TRPEAIKMAPLVHALAKDPFFEAKVCVTAQHRE-MLDQVLKLFSIVPDYDLNIMQPGQGLTEITCRILEG 77 (376)
T ss_dssp EEEEEEC---SHHHHHHHHHHHHHHHHCTTCEEEEEECCTTGG-GGHHHHHHTTCCCSEECCCCSSSSCHHHHHHHHHHH
T ss_pred EEEEEEE---HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHH-HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 6999998---267399999999999738998779999088989-999999862878774400488999899999999986
Q ss_pred HHHHHHHCCCEEEEECCCCCCCCCHHHHHC----CC--CCEEEECCCC---CCCCCCCC--CCE---EEECCCCCCCCCC
Q ss_conf 999987189729993787777850112101----89--8448812336---88778996--438---9725754896777
Q 003557 493 IAKLINEDKIQILINLNGYTKGARNEIFAM----QP--APIQVSYMGF---PGTTGASY--IDY---LVTDEFVSPLRYA 558 (811)
Q Consensus 493 ~~~~i~~~~~dil~~~~~~~~~~~~~~~~~----r~--Apvq~~~~g~---~~t~g~~~--~dy---~~~d~~~~~~~~~ 558 (811)
+.+.+...++|+++ ..|.|...++. .. -||-=..-|. ..+.|+|. +.. -+++-+.++.+..
T Consensus 78 ~~~~~~~~kPD~v~-----v~GDr~e~la~a~aa~~~~ipi~HiegG~~s~~~~~~~pde~~R~~iskls~~hf~~~~~~ 152 (376)
T d1f6da_ 78 LKPILAEFKPDVVL-----VHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTETS 152 (376)
T ss_dssp HHHHHHHHCCSEEE-----EETTCHHHHHHHHHHHTTTCCEEEESCCCCCSCTTSSTTHHHHHHHHHHTCSEEEESSHHH
T ss_pred HHHHHHHCCCCCEE-----EECCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCHHH
T ss_conf 47889745676224-----3103443136899987407538998524465420004740665542032004887434788
Q ss_pred CCCCCCEEECC--CCCCCCCCCCCC------CCCCCCCC---C-C-CCCCCCCCCCCEEEEECCCCCCCC---HHHHHHH
Q ss_conf 88731257769--853347996555------56789999---9-8-867799999947998539878889---8899999
Q 003557 559 HIYSEKLVHVP--HCYFVNDYKQKN------MDVLDPNC---Q-P-KRSDYGLPEDKFIFACFNQLYKMD---PEIFNTW 622 (811)
Q Consensus 559 ~~~~e~~~~lp--~~~~~~~~~~~~------~~~~~~~~---~-~-~r~~~gl~~~~~~~~~~~~~~K~~---~~~~~~~ 622 (811)
.+++..+- ...+...+.+.. ........ . . .......+++.+++.++.|..-.. ..++.+.
T Consensus 153 ---~~~L~~~G~~~~~I~~vG~~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvt~H~~~~~~~~~~~i~~~l 229 (376)
T d1f6da_ 153 ---RQNLLRENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHAL 229 (376)
T ss_dssp ---HHHHHHTTCCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEECCCCBSSCCHHHHHHHHHH
T ss_pred ---HHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf ---86877518986534121672487888877654235123211110223347777669983354111120099999998
Q ss_pred HHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHCC
Q ss_conf 99983369907996228833599999999982999995688279890889986077718716989998067999877289
Q 003557 623 CNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGL 702 (811)
Q Consensus 623 ~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~gi~~~rv~f~~~~~~~~~~~~~~~~Di~l~~~~~~~~~t~~eal~~G~ 702 (811)
..+.....+..+++...+.. .... .......- ..++.+.+..++.+++..+..+++++ -++|....||-+.|+
T Consensus 230 ~~~~~~~~~~~ii~p~~~~~-~~~~-~~~~~~~~-~~ni~~~~~l~~~~fl~ll~~a~~vi----gnSssgi~Ea~~lg~ 302 (376)
T d1f6da_ 230 ADIATTHQDIQIVYPVHLNP-NVRE-PVNRILGH-VKNVILIDPQEYLPFVWLMNHAWLIL----TDSGGIQEEAPSLGK 302 (376)
T ss_dssp HHHHHHCTTEEEEEECCBCH-HHHH-HHHHHHTT-CTTEEEECCCCHHHHHHHHHHCSEEE----ESSSGGGGTGGGGTC
T ss_pred HHHHHHCCEEEEECCCCCCH-HHHH-HHHHHHCC-CCCCEEECCCCHHHHHHHHHHCEEEE----ECCCCHHHHHHHHCC
T ss_conf 65434214047852544321-2444-67666404-44513323556789999984163998----368506766787489
Q ss_pred CCCCCCC-CCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 8442368-8651101589988559998644379989999999984099999999
Q 003557 703 PMITLPL-EKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQAL 755 (811)
Q Consensus 703 Pvvt~~g-~~~~~~~~~~~l~~~g~~~~~v~~~~~~~~~~~~~l~~d~~~~~~~ 755 (811)
|||++.. ....+++.. |..- ++..+.++..+.+.+...++..+..+
T Consensus 303 P~Inir~~ter~~~~~~------g~~i-~v~~~~~~I~~ai~~~l~~~~~~~~~ 349 (376)
T d1f6da_ 303 PVLVMRDTTERPEAVTA------GTVR-LVGTDKQRIVEEVTRLLKDENEYQAM 349 (376)
T ss_dssp CEEECSSCCSCHHHHHH------TSEE-ECCSSHHHHHHHHHHHHHCHHHHHHH
T ss_pred CEEECCCCCCCCCCEEC------CEEE-ECCCCHHHHHHHHHHHHHCHHHHHHH
T ss_conf 88972787657641236------8069-87899999999999997285766530
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.93 E-value=0.033 Score=27.84 Aligned_cols=97 Identities=20% Similarity=0.173 Sum_probs=38.0
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 999999199999999999999729993999999999999829989999999999840-9999799999999999849958
Q 003557 31 GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL-KPTFPDAYLNLGNVYKALGMPQ 109 (811)
Q Consensus 31 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~ 109 (811)
..++...++++.|.+.+.+. ++...|......+........+.. ... ....++-.......|...|.++
T Consensus 47 ~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i-----~~~~~~~~~d~l~~~v~~ye~~~~~e 116 (336)
T d1b89a_ 47 ASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQM-----CGLHIVVHADELEELINYYQDRGYFE 116 (336)
T ss_dssp HHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHH-----TTTTTTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCHHHHHHHHHHC-----CCHHHHHHHHHHHHHCCHHHHHHH-----HHHHHHCCHHHHHHHHHHHHHCCCHH
T ss_conf 99997031599999999880-----889999999999972728789999-----99875357887899999998769859
Q ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHH
Q ss_conf 999999999950998-6688769999999
Q 003557 110 EAIMCYQRAVQTRPN-AIAFGNLASTYYE 137 (811)
Q Consensus 110 ~A~~~~~~al~~~p~-~~~~~~la~~~~~ 137 (811)
+.+.+++..+...+. ...+..++.+|.+
T Consensus 117 ~Li~~Le~~~~~~~~~~~~~~~L~~lyak 145 (336)
T d1b89a_ 117 ELITMLEAALGLERAHMGMFTELAILYSK 145 (336)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999975774446799999999998
|
| >d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Oligosaccharide phosphorylase domain: Maltodextrin phosphorylase (MALP) species: Escherichia coli [TaxId: 562]
Probab=87.64 E-value=0.49 Score=20.21 Aligned_cols=114 Identities=11% Similarity=0.024 Sum_probs=64.3
Q ss_pred CCCCCEEEEECCCC--CCCCHHHH----HHHHHHHHHCCC-----EEEEEECCC-HH---HHHHH---HHHHHH---C-C
Q ss_conf 99994799853987--88898899----999999833699-----079962288-33---59999---999998---2-9
Q 003557 598 LPEDKFIFACFNQL--YKMDPEIF----NTWCNILRRVPN-----SALWLLRFP-AA---GEMRL---RAYAVA---Q-G 655 (811)
Q Consensus 598 l~~~~~~~~~~~~~--~K~~~~~~----~~~~~il~~~p~-----~~l~~~~~~-~~---~~~~l---~~~~~~---~-g 655 (811)
|+.+.++.|..-|. +|.-.-.+ +...+ ++..|+ ..+++.|.. |. ++.-+ ...+.. - -
T Consensus 522 ldp~~LtigfaRRfa~YKR~~L~~~~i~~l~~~-l~~~~~~~~~Pvq~IfaGKAhP~d~~gK~iIk~I~~va~~in~dp~ 600 (796)
T d1l5wa_ 522 INPQAIFDIQIKRLHEYKRQHLNLLHILALYKE-IRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPL 600 (796)
T ss_dssp CCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHH-HHTCTTCCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred CCHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH-HHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 585651403434544431453035359999999-8508645778659997488898317899999999999998617855
Q ss_pred CC-CCCEEECCCCCHHHHHHHCCCCCEEECCC--CCCC-HHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99-99568827989088998607771871698--9998-0679998772898442368865
Q 003557 656 VQ-PDQIIFTDVAMKQEHIRRSSLADLFLDTP--LCNA-HTTGTDILWAGLPMITLPLEKM 712 (811)
Q Consensus 656 i~-~~rv~f~~~~~~~~~~~~~~~~Di~l~~~--~~~~-~~t~~eal~~G~Pvvt~~g~~~ 712 (811)
+. .-||+|++-=+..---.....+||.+.++ |.+. ||+-+-|+--|++.++--+..+
T Consensus 601 ~~~~~kVVFlenYdv~lA~~lv~g~DVwln~p~~p~EASGTSgMKaalNG~lnlstlDGw~ 661 (796)
T d1l5wa_ 601 VGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGAN 661 (796)
T ss_dssp TGGGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCTTH
T ss_pred HCCCEEEEEECCCCHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHCCCEEEECCCCHH
T ss_conf 4363338980787568999874401265409998734578267799985971660466447
|
| >d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Oligosaccharide phosphorylase domain: Glycogen phosphorylase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=87.48 E-value=0.5 Score=20.15 Aligned_cols=113 Identities=16% Similarity=0.096 Sum_probs=63.7
Q ss_pred CCCCCEEEEECCCC--CCCCHH----HHHHHHHHHHHCCC-----EEEEEECCCHHH-H--HHHHHHHHHC--------C
Q ss_conf 99994799853987--888988----99999999833699-----079962288335-9--9999999982--------9
Q 003557 598 LPEDKFIFACFNQL--YKMDPE----IFNTWCNILRRVPN-----SALWLLRFPAAG-E--MRLRAYAVAQ--------G 655 (811)
Q Consensus 598 l~~~~~~~~~~~~~--~K~~~~----~~~~~~~il~~~p~-----~~l~~~~~~~~~-~--~~l~~~~~~~--------g 655 (811)
|..+.++.+-.-|. +|...- .+..+.++.+ .|+ ..+++.|....+ . ..+.+.+.+. .
T Consensus 546 ldp~~lfd~~arRfheYKRq~Ln~~~i~~ly~rlk~-~~~~~~~P~q~IFaGKAhP~d~~gK~iIk~I~~va~~in~dp~ 624 (824)
T d2gj4a1 546 INPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKK-EPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPV 624 (824)
T ss_dssp CCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHH-CTTSCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTT
T ss_pred CCCCHHHHHHEEECHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 896411013100002333345667658999987653-4567888749998078897638899999999999998741811
Q ss_pred CC-CCCEEECCCCCHHHHHHHCCCCCEEECCC--CCCC-HHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99-99568827989088998607771871698--9998-067999877289844236886
Q 003557 656 VQ-PDQIIFTDVAMKQEHIRRSSLADLFLDTP--LCNA-HTTGTDILWAGLPMITLPLEK 711 (811)
Q Consensus 656 i~-~~rv~f~~~~~~~~~~~~~~~~Di~l~~~--~~~~-~~t~~eal~~G~Pvvt~~g~~ 711 (811)
+. .-+|+|++--+..---.....+||.+.++ |.+. ||+-+-++--|++.+.--...
T Consensus 625 ~~~~lkVvFlenY~v~lA~~li~g~Dvwln~p~~~~EASGTSgMK~alNGal~lstlDGw 684 (824)
T d2gj4a1 625 VGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGA 684 (824)
T ss_dssp TGGGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTT
T ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCEEECCCCCH
T ss_conf 215344887078766999975114344131899973457750458997598356356635
|
| >d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Ribosomal protein S2 family: Ribosomal protein S2 domain: Ribosomal protein S2 species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.93 E-value=0.96 Score=18.31 Aligned_cols=109 Identities=15% Similarity=0.154 Sum_probs=70.7
Q ss_pred CEEEEECC-CCC----CCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHC
Q ss_conf 47998539-878----8898899999999833699079962288335999999999829999956882798908899860
Q 003557 602 KFIFACFN-QLY----KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS 676 (811)
Q Consensus 602 ~~~~~~~~-~~~----K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~gi~~~rv~f~~~~~~~~~~~~~ 676 (811)
.++|++-. ..+ .-+...++...+++....+...+++|.-+.....++..+...|...-.=.++|..-.......+
T Consensus 29 ~YIy~~r~ngi~IIdL~kT~~~L~~A~~~l~~~~~~~ILfVgtk~~~~~~v~~~A~~~g~~~v~~RWlgG~LTN~~~~~~ 108 (193)
T d1vi6a_ 29 KFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRYEPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEY 108 (193)
T ss_dssp GGEEEECTTSCEEECHHHHHHHHHHHHHHHTTSCGGGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTTSTTC
T ss_pred CCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHC
T ss_conf 53514068986896699999999999999977426752776226216789999998639985445345774331677520
Q ss_pred CCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7771871698999806799987728984423688
Q 003557 677 SLADLFLDTPLCNAHTTGTDILWAGLPMITLPLE 710 (811)
Q Consensus 677 ~~~Di~l~~~~~~~~~t~~eal~~G~Pvvt~~g~ 710 (811)
..-|+.+-+.|..-...+.||.-+|+|||++...
T Consensus 109 ~~P~~liv~dp~~d~~ai~Ea~~l~IPvI~ivDT 142 (193)
T d1vi6a_ 109 REPEVVFVNDPAIDKQAVSEATAVGIPVVALCDS 142 (193)
T ss_dssp CCCSEEEESCTTTTHHHHHHHHHTTCCEEEEECT
T ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECC
T ss_conf 5551899976861078999998738972667316
|