Citrus Sinensis ID: 003571

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810

MMNAESTSTTNPLKITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYTNPDAPKALSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKCTNLHQSIV

cccccccccccccEEEEcccccccccccccccccccccccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccEEEEEEEcccccccccccEEEEEEcccEEEEEEEEEccEEEEEEEEEEccccEEEEEEEcccccEEEEEEEEccccccccEEEcccEEEEEEEcccccccccccccccccccEEEEEEEEEEEccccEEEEEcccEEEEEcccEEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccEEEEEcccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcEEEccccEEEEcccccccccEEccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccccccccEEcccHHHHHHHHcEEEEEcccEEEEcccccccccccEEEEEEEEEccEEEEEEEEccEEEEEEEEEccccccccEEEEEEEccEEEEEEcccccEEEEEcccccEEEEcccc

cccccccccccccEEEEcccHHHHHHHcccccccEEEEEEcccccEEEEEcHcHcccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccEEEEEcccccccccccccEEEEccccEEEEEEEEEccEEEEEEEEEEccccEEEEEEEEcccccEEEEEEEcccccccEEEEcccEEEEEEEccccccccccccccccccEEEEEEEEEEEEccccEEEEEcccEEEEEcccEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccEEEEcccccHHccccccccccccccccHHHHHHHcccccHHHHHHHHHHccEEEEEccccccccccccccEccccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHccccEEEEccccHHHcccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccHHHHHHHcccccccccEEEEEEEccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccccccccccccccEEcccHHHHHHHHHHHHHcccccEEEccccccHHcccccEEEEEEcccEEEEEEEEccEEEEEEEEEEcccccEEEEEEEEEccEEEEEEcccccEEEEccccEEEccEEEEc

mmnaeststtnplkitfngpakhftdaipigngrlgamvwggvpsetlklnedtlwtgvpgdytnpdapkalsDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIelefddshLKYAEETYRRELDLNTATARVKYSvgnveftrehfssnpdqVIVTKIsgsesgslsfnvsldslldnhsyvngnnqiimegrcpgkrippkananddpkgiqFSAILEIkisddrgtisaledkklkvegSDWAVLLLVASssfdgpfinpsdskkdptsESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSiqlsrspkdivtdtcseenidtvpsaervksfqtdedpsLVELLFQFGRYLLisssrpgtqvanlqgiwnedlsptwdsaphvninlemnywqslpcnlsecqepLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIeghdgyletnpstspehefiapdgklacvsysstMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKslprlrptkiaedgsimewaqdfkdpevhhrhlshlfglfpghtitieknpDLCKAAEKTLQKrgeegpgwsiTWKTALWARLHDQEHAYRMVKRLfnlvdpehekhfegglysnlfaahppfqidanfGFTAAVAEMLVQSTLNdlyllpalpwdkwssgcvkglkarggetvsicwkdgdlhevgiysnysnndhdsfktLHYRGTSVKVNLSAGKIYTFNRQLKCTNLHQSIV

mmnaeststtnplkiTFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYTNPDAPKALSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEftrehfssnpdqVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASssfdgpfinpsdskkdptsESMSALQSIRNLSYSDLYTRHLDDYQKLFHrvsiqlsrspkdivtdtcseenidtvpsaervksfqtdedPSLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKvlkslprlrptkiaedgsIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLqkrgeegpgwsiTWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKiytfnrqlkctnlhqsiv

*************KITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYT**********VRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFS***DQVIVTKI*******LSFNVSLDSLLDNHSYVNGNNQIIMEGR******************IQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSSF*************************RNLSYSDLYTRHLDDYQKLFHRVSIQLS*****IV***************************SLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLET********EFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAE*********GPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKCTNL*****

**************ITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYTNPDAPKALSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKCTNLHQSIV

**********NPLKITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYTNPDAPKALSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSSFDGPFINPS**************QSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKCTNLHQSIV

********TTNPLKITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYTNPDAPKALSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRS***************TVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKCTNLHQSIV

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		810	2.2.26 [Sep-21-2011]
Q8L7W8		843	Alpha-L-fucosidase 2 OS=A	yes	no	0.962	0.925	0.644	0.0
Q5AU81		809	Alpha-fucosidase A OS=Eme	no	no	0.854	0.855	0.310	6e-86
A2R797		793	Probable alpha-fucosidase	yes	no	0.846	0.865	0.303	4e-79
Q2USL3		723	Probable alpha-fucosidase	no	no	0.808	0.905	0.262	3e-54

>sp\|Q8L7W8\|FUCO2_ARATH Alpha-L-fucosidase 2 OS=Arabidopsis thaliana GN=At4g34260 PE=2 SV=1	Back alignment and function desciption

 Score = 1086 bits (2809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/802 (64%), Positives = 631/802 (78%), Gaps = 22/802 (2%)

Query: 10  TNPLKITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYTNPDAP 69
           + PLK+TF GP++++TDAIPIGNGRLGA +WGGV SE L +NEDT+WTGVP DYTN  AP
Sbjct: 49  SRPLKLTFGGPSRNWTDAIPIGNGRLGATIWGGVSSEILNINEDTIWTGVPADYTNQKAP 108

Query: 70  KALSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELD 129
           +AL++VR LVD   YAEAT+ +VKL G P+DVYQ++GD+ LEFD SH KY + +YRRELD
Sbjct: 109 EALAEVRRLVDERNYAEATSEAVKLSGQPSDVYQIVGDLNLEFDSSHRKYTQASYRRELD 168

Query: 130 LNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNG 189
           L TA A+V YSVG V+F+RE F+SNPDQVI+ KI  S+ GSLSF VS DS L +HS  N 
Sbjct: 169 LETAVAKVSYSVGAVDFSREFFASNPDQVIIAKIYASKPGSLSFKVSFDSELHHHSETNP 228

Query: 190 N-NQIIMEGRCPGKRIP----PKANAN----DDPKGIQFSAILEIKISDDRGTISALEDK 240
             NQI+M G C  KR+P       NA     DD KG+QF++ILE+++S+  G++S+L  K
Sbjct: 229 KANQILMRGSCRPKRLPVNLKKSINATNIPYDDHKGLQFASILEVRVSNG-GSVSSLGGK 287

Query: 241 KLKVEGSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDD 300
           KL VE +DWAVLLL ASS+FDGPF  P DSK DP  E ++ + S++  SYSDLY RHL D
Sbjct: 288 KLSVEKADWAVLLLAASSNFDGPFTMPVDSKIDPAKECVNRISSVQKYSYSDLYARHLGD 347

Query: 301 YQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYL 360
           YQKLF+RVS+ LS S       + +E       +AERV+SF+TD+DPSLVELLFQ+GRYL
Sbjct: 348 YQKLFNRVSLHLSGS-------STNETVQQATSTAERVRSFKTDQDPSLVELLFQYGRYL 400

Query: 361 LISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLT 420
           LISSSRPGTQVANLQGIWN D+ P WD APH+NINL+MNYW SLP N+ ECQEPLFD+++
Sbjct: 401 LISSSRPGTQVANLQGIWNRDIQPPWDGAPHLNINLQMNYWHSLPGNIRECQEPLFDYMS 460

Query: 421 YLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNY 480
            L+ING KTAQVNY ASGWV H  +DIWAK+S DRG+ VWALWPMGGAWLCTH WEHY Y
Sbjct: 461 ALAINGRKTAQVNYGASGWVAHQVSDIWAKTSPDRGEAVWALWPMGGAWLCTHAWEHYTY 520

Query: 481 TMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSS 540
           TMD++FL+K+ YPLLEGC SFLLDWLI+G DG+L+TNPSTSPEH F AP GK A VSYSS
Sbjct: 521 TMDKEFLKKKGYPLLEGCTSFLLDWLIKGKDGFLQTNPSTSPEHMFTAPIGKPASVSYSS 580

Query: 541 TMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDP 600
           TMD+AII+EVF+ I+SA+E+L K  D L+ KV+ +  +L PT+I++DGSI EWA+DF+DP
Sbjct: 581 TMDIAIIKEVFADIVSASEILGKTNDTLIGKVIAAQAKLPPTRISKDGSIREWAEDFEDP 640

Query: 601 EVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQ 660
           EVHHRH+SHLFGLFPGHTIT+EK+P+L KA E TL+KRGEEGPGWS TWK ALWARLH+ 
Sbjct: 641 EVHHRHVSHLFGLFPGHTITVEKSPELAKAVEATLKKRGEEGPGWSTTWKAALWARLHNS 700

Query: 661 EHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLND 720
           EHAYRMV  +F+LVDP +E+++EGGLYSN+F AHPPFQIDANFGF AAVAEMLVQST  D
Sbjct: 701 EHAYRMVTHIFDLVDPLNERNYEGGLYSNMFTAHPPFQIDANFGFAAAVAEMLVQSTTKD 760

Query: 721 LYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYR 780
           LYLLPALP DKW +G V GL+ARGG TVSI W +G+L E G++S     +      + YR
Sbjct: 761 LYLLPALPADKWPNGIVNGLRARGGVTVSIKWMEGNLVEFGLWS-----EQIVSTRIVYR 815

Query: 781 GTSVKVNLSAGKIYTFNRQLKC 802
           G S    L  GK++TF++ L+C
Sbjct: 816 GISAAAELLPGKVFTFDKDLRC 837

Hydrolyzes alpha-1,2-linked fucose. Also active on fucosylated xyloglucan oligosaccharides.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 5EC: 1

>sp\|Q5AU81\|AFCA_EMENI Alpha-fucosidase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=afcA PE=2 SV=1	Back alignment and function description

>sp\|A2R797\|AFCA_ASPNC Probable alpha-fucosidase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=afcA PE=3 SV=1	Back alignment and function description

>sp\|Q2USL3\|AFCA_ASPOR Probable alpha-fucosidase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=afcA PE=3 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		810
224103687		803	predicted protein [Populus trichocarpa]	0.976	0.985	0.736	0.0
224103693		836	predicted protein [Populus trichocarpa]	0.986	0.955	0.729	0.0
224056204		808	predicted protein [Populus trichocarpa]	0.982	0.985	0.732	0.0
255573091		840	conserved hypothetical protein [Ricinus	0.934	0.901	0.759	0.0
359475494		817	PREDICTED: alpha-L-fucosidase 2-like [Vi	0.965	0.957	0.735	0.0
255573093		849	conserved hypothetical protein [Ricinus	0.976	0.931	0.704	0.0
356574288		876	PREDICTED: alpha-L-fucosidase 2-like [Gl	0.976	0.902	0.684	0.0
224056206		843	predicted protein [Populus trichocarpa]	0.974	0.935	0.692	0.0
356536151		877	PREDICTED: alpha-L-fucosidase 2-like [Gl	0.976	0.901	0.677	0.0
449446103		803	PREDICTED: alpha-L-fucosidase 2-like [Cu	0.980	0.988	0.691	0.0

>gi\|224103687\|ref\|XP_002313154.1\| predicted protein [Populus trichocarpa] gi\|222849562\|gb\|EEE87109.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1253 bits (3243), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/802 (73%), Positives = 692/802 (86%), Gaps = 11/802 (1%)

Query: 1   MMNAESTSTTNPLKITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVP 60
           M + ++   +  LKITFNGPAKH+TDAIPIGNGRLGAM+WGGV  ETL+LNEDTLWTG P
Sbjct: 1   MDDDDNGENSRSLKITFNGPAKHWTDAIPIGNGRLGAMIWGGVSLETLQLNEDTLWTGTP 60

Query: 61  GDYTNPDAPKALSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYA 120
           G+YTNP AP+ALS VR LVD+GQYA+AT A+ KL   P+DVYQLLGDI+LEFD+SHLKY 
Sbjct: 61  GNYTNPHAPEALSVVRKLVDNGQYADATTAAEKLSHDPSDVYQLLGDIKLEFDNSHLKYV 120

Query: 121 EETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSL 180
           E++Y RELDL+TATARVKYSVG+VE+TRE+F+SNP+QVI TKISGS+SGS+SF V LDS 
Sbjct: 121 EKSYHRELDLDTATARVKYSVGDVEYTREYFASNPNQVIATKISGSKSGSVSFTVYLDSK 180

Query: 181 LDNHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDK 240
           + ++SYV G NQIIMEG CPGKRIPPK NA+D+PKGIQF+AIL ++IS+ RG +  L+ +
Sbjct: 181 MHHYSYVKGENQIIMEGSCPGKRIPPKLNADDNPKGIQFTAILNLQISNSRGVVHVLDGR 240

Query: 241 KLKVEGSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDD 300
           KLKVEGSDWA+LLLV+SSSFDGPF  P DSKKDPTS+S+SAL+SI NLSY+DLY  HLDD
Sbjct: 241 KLKVEGSDWAILLLVSSSSFDGPFTKPIDSKKDPTSDSLSALKSINNLSYTDLYAHHLDD 300

Query: 301 YQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYL 360
           YQ LFHRVS+QLS+S K       SE+N  TV +AERVKSF+TDEDPSLVELLFQ+GRYL
Sbjct: 301 YQSLFHRVSLQLSKSSK-----RRSEDN--TVSTAERVKSFKTDEDPSLVELLFQYGRYL 353

Query: 361 LISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLT 420
           LIS SRPGTQVANLQGIWN+D+ P WD A H+NINL+MNYW +LPCNL ECQ+PLF++++
Sbjct: 354 LISCSRPGTQVANLQGIWNKDIEPPWDGAQHLNINLQMNYWPALPCNLKECQDPLFEYIS 413

Query: 421 YLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNY 480
            LSINGSKTA+VNY A GWV H  +DIWAK+S DRG+ VWALWPMGGAWLCTHLWEHY Y
Sbjct: 414 SLSINGSKTAKVNYDAKGWVAHQVSDIWAKTSPDRGQAVWALWPMGGAWLCTHLWEHYTY 473

Query: 481 TMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSS 540
           TMD+DFL+ +AYPLLEGC+ FLLDWLIEG  GYLETNPSTSPEH FI PDGK A VSYSS
Sbjct: 474 TMDKDFLKNKAYPLLEGCSLFLLDWLIEGRGGYLETNPSTSPEHMFIDPDGKPASVSYSS 533

Query: 541 TMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDP 600
           TMDM+II+EVFSAIISAAE+L KNED +V+KV ++ PRL PT+IA DGSIMEWA DF+DP
Sbjct: 534 TMDMSIIKEVFSAIISAAEILGKNEDEIVQKVREAQPRLLPTRIARDGSIMEWAVDFEDP 593

Query: 601 EVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQ 660
           E+HHRH+SHLFGLFPGHTIT+EK PDLCKAA+ TL KRG+EGPGWS  WKTALWARLH+ 
Sbjct: 594 EIHHRHVSHLFGLFPGHTITVEKTPDLCKAADYTLYKRGDEGPGWSTIWKTALWARLHNS 653

Query: 661 EHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLND 720
           EHAYRMVK LF+LVDP+HE ++EGGLY NLF +HPPFQIDANFGF+AA+AEMLVQST+ D
Sbjct: 654 EHAYRMVKHLFDLVDPDHESNYEGGLYGNLFTSHPPFQIDANFGFSAAIAEMLVQSTVKD 713

Query: 721 LYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYR 780
           LYLLPALP  KW++GCVKGLKARGG TV++CWK+GDLHEVG++S     +H S K LHYR
Sbjct: 714 LYLLPALPRYKWANGCVKGLKARGGVTVNVCWKEGDLHEVGLWS----KEHHSIKRLHYR 769

Query: 781 GTSVKVNLSAGKIYTFNRQLKC 802
           GT V  NLS G++YTFNRQL+C
Sbjct: 770 GTIVNANLSPGRVYTFNRQLRC 791

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224103693\|ref\|XP_002313157.1\| predicted protein [Populus trichocarpa] gi\|222849565\|gb\|EEE87112.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224056204\|ref\|XP_002298754.1\| predicted protein [Populus trichocarpa] gi\|222846012\|gb\|EEE83559.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255573091\|ref\|XP_002527475.1\| conserved hypothetical protein [Ricinus communis] gi\|223533115\|gb\|EEF34873.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|359475494\|ref\|XP_002270199.2\| PREDICTED: alpha-L-fucosidase 2-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255573093\|ref\|XP_002527476.1\| conserved hypothetical protein [Ricinus communis] gi\|223533116\|gb\|EEF34874.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356574288\|ref\|XP_003555281.1\| PREDICTED: alpha-L-fucosidase 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|224056206\|ref\|XP_002298755.1\| predicted protein [Populus trichocarpa] gi\|222846013\|gb\|EEE83560.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356536151\|ref\|XP_003536603.1\| PREDICTED: alpha-L-fucosidase 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|449446103\|ref\|XP_004140811.1\| PREDICTED: alpha-L-fucosidase 2-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		810
TAIR\|locus:2116154		843	FUC95A [Arabidopsis thaliana (	0.971	0.933	0.639	5.8e-288
ASPGD\|ASPL0000035173		757	afcC [Emericella nidulans (tax	0.579	0.619	0.389	1.1e-120
UNIPROTKB\|G4NET6		827	MGG_00050 "Uncharacterized pro	0.567	0.556	0.369	2e-98
ASPGD\|ASPL0000008702		831	afcB [Emericella nidulans (tax	0.891	0.868	0.343	4.8e-94
ASPGD\|ASPL0000014922		809	afcA [Emericella nidulans (tax	0.858	0.859	0.318	6.2e-85
UNIPROTKB\|Q5AU81		809	afcA "Alpha-fucosidase A" [Asp	0.858	0.859	0.318	6.2e-85

TAIR\|locus:2116154 FUC95A [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2766 (978.7 bits), Expect = 5.8e-288, P = 5.8e-288
 Identities = 519/811 (63%), Positives = 637/811 (78%)

Query:     1 MMNAESTSTTNPLKITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVP 60
             +M+ +  S   PLK+TF GP++++TDAIPIGNGRLGA +WGGV SE L +NEDT+WTGVP
Sbjct:    42 LMDGQDLS--RPLKLTFGGPSRNWTDAIPIGNGRLGATIWGGVSSEILNINEDTIWTGVP 99

Query:    61 GDYTNPDAPKALSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYA 120
              DYTN  AP+AL++VR LVD   YAEAT+ +VKL G P+DVYQ++GD+ LEFD SH KY 
Sbjct:   100 ADYTNQKAPEALAEVRRLVDERNYAEATSEAVKLSGQPSDVYQIVGDLNLEFDSSHRKYT 159

Query:   121 EETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSL 180
             + +YRRELDL TA A+V YSVG V+F+RE F+SNPDQVI+ KI  S+ GSLSF VS DS 
Sbjct:   160 QASYRRELDLETAVAKVSYSVGAVDFSREFFASNPDQVIIAKIYASKPGSLSFKVSFDSE 219

Query:   181 LDNHSYVNGN-NQIIMEGRCPGKRIPP--KANAN------DDPKGIQFSAILEIKISDDR 231
             L +HS  N   NQI+M G C  KR+P   K + N      DD KG+QF++ILE+++S+  
Sbjct:   220 LHHHSETNPKANQILMRGSCRPKRLPVNLKKSINATNIPYDDHKGLQFASILEVRVSNG- 278

Query:   232 GTISALEDKKLKVEGSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYS 291
             G++S+L  KKL VE +DWAVLLL ASS+FDGPF  P DSK DP  E ++ + S++  SYS
Sbjct:   279 GSVSSLGGKKLSVEKADWAVLLLAASSNFDGPFTMPVDSKIDPAKECVNRISSVQKYSYS 338

Query:   292 DLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVE 351
             DLY RHL DYQKLF+RVS+ LS S  +   +T  +       +AERV+SF+TD+DPSLVE
Sbjct:   339 DLYARHLGDYQKLFNRVSLHLSGSSTN---ETVQQ----ATSTAERVRSFKTDQDPSLVE 391

Query:   352 LLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSEC 411
             LLFQ+GRYLLISSSRPGTQVANLQGIWN D+ P WD APH+NINL+MNYW SLP N+ EC
Sbjct:   392 LLFQYGRYLLISSSRPGTQVANLQGIWNRDIQPPWDGAPHLNINLQMNYWHSLPGNIREC 451

Query:   412 QEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLC 471
             QEPLFD+++ L+ING KTAQVNY ASGWV H  +DIWAK+S DRG+ VWALWPMGGAWLC
Sbjct:   452 QEPLFDYMSALAINGRKTAQVNYGASGWVAHQVSDIWAKTSPDRGEAVWALWPMGGAWLC 511

Query:   472 THLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDG 531
             TH WEHY YTMD++FL+K+ YPLLEGC SFLLDWLI+G DG+L+TNPSTSPEH F AP G
Sbjct:   512 THAWEHYTYTMDKEFLKKKGYPLLEGCTSFLLDWLIKGKDGFLQTNPSTSPEHMFTAPIG 571

Query:   532 KLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIM 591
             K A VSYSSTMD+AII+EVF+ I+SA+E+L K  D L+ KV+ +  +L PT+I++DGSI 
Sbjct:   572 KPASVSYSSTMDIAIIKEVFADIVSASEILGKTNDTLIGKVIAAQAKLPPTRISKDGSIR 631

Query:   592 EWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKT 651
             EWA+DF+DPEVHHRH+SHLFGLFPGHTIT+EK+P+L KA E TL+KRGEEGPGWS TWK 
Sbjct:   632 EWAEDFEDPEVHHRHVSHLFGLFPGHTITVEKSPELAKAVEATLKKRGEEGPGWSTTWKA 691

Query:   652 ALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAE 711
             ALWARLH+ EHAYRMV  +F+LVDP +E+++EGGLYSN+F AHPPFQIDANFGF AAVAE
Sbjct:   692 ALWARLHNSEHAYRMVTHIFDLVDPLNERNYEGGLYSNMFTAHPPFQIDANFGFAAAVAE 751

Query:   712 MLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDH 771
             MLVQST  DLYLLPALP DKW +G V GL+ARGG TVSI W +G+L E G++S    +  
Sbjct:   752 MLVQSTTKDLYLLPALPADKWPNGIVNGLRARGGVTVSIKWMEGNLVEFGLWSEQIVSTR 811

Query:   772 DSFKTLHYRGTSVKVNLSAGKIYTFNRQLKC 802
                  + YRG S    L  GK++TF++ L+C
Sbjct:   812 -----IVYRGISAAAELLPGKVFTFDKDLRC 837

GO:0003824 "catalytic activity" evidence=IEA

GO:0004560 "alpha-L-fucosidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0047513 "1,2-alpha-L-fucosidase activity" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

ASPGD\|ASPL0000035173 afcC [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|G4NET6 MGG_00050 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000008702 afcB [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000014922 afcA [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5AU81 afcA "Alpha-fucosidase A" [Aspergillus nidulans FGSC A4 (taxid:227321)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L7W8	FUCO2_ARATH	3, ., 2, ., 1, ., 5, 1	0.6446	0.9629	0.9252	yes	no
A2R797	AFCA_ASPNC	3, ., 2, ., 1, ., 5, 1	0.3032	0.8469	0.8650	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.IX.2424.1	hypothetical protein (790 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		810
PRK13807		756	maltose phosphorylase; Provisional	100.0
COG1554		772	ATH1 Trehalose and maltose hydrolases (possible ph	100.0
PF14498		236	Glyco_hyd_65N_2: Glycosyl hydrolase family 65, N-t	100.0
PF03632		370	Glyco_hydro_65m: Glycosyl hydrolase family 65 cent	100.0
KOG4125		682	consensus Acid trehalase [Carbohydrate transport a	99.95
TIGR01577		616	oligosac_amyl oligosaccharide amylase. The name of	98.33
PF10222		604	DUF2152: Uncharacterized conserved protein (DUF215	98.25
PF05592		509	Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; Int	97.95
COG3459		1056	Cellobiose phosphorylase [Carbohydrate transport a	97.08
PF03636		255	Glyco_hydro_65N: Glycosyl hydrolase family 65, N-t	96.83
PF04685		365	DUF608: Protein of unknown function, DUF608; Inter	96.81
PF06202		370	GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR	96.8
TIGR01535		648	glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc	96.68
COG3408		641	GDB1 Glycogen debranching enzyme [Carbohydrate tra	95.96
PF03633		54	Glyco_hydro_65C: Glycosyl hydrolase family 65, C-t	95.95
COG3387		612	SGA1 Glucoamylase and related glycosyl hydrolases	95.72
COG4354		721	Predicted bile acid beta-glucosidase [Carbohydrate	89.07
TIGR01561		575	gde_arch glycogen debranching enzyme, archaeal typ	88.75
PRK13271		569	treA trehalase; Provisional	85.56
PRK13272		542	treA trehalase; Provisional	82.77

>PRK13807 maltose phosphorylase; Provisional	Back alignment and domain information

Probab=100.00  E-value=2.2e-53  Score=504.58  Aligned_cols=569  Identities=15%  Similarity=0.150  Sum_probs=395.1

Q ss_pred             CCccCcCCeEEEEeccccEEEEE--EEECC--EEEEEEEEEecCCCEE-EEE--EEeC-CCCceEEEEEecCCCCCCee-
Q 003571          116 HLKYAEETYRRELDLNTATARVK--YSVGN--VEFTREHFSSNPDQVI-VTK--ISGS-ESGSLSFNVSLDSLLDNHSY-  186 (810)
Q Consensus       116 ~~~~~~~~Y~R~LDL~~g~~~~~--~~~~g--~~~~r~~f~S~~d~vl-v~~--i~a~-~~~~l~~~l~l~~~~~~~~~-  186 (810)
                      ...+.  +|+|+|||.+|+++.+  |+.+|  ..++-+.|||+.+..+ +++  |++. ..+.+.+.-.++........ 
T Consensus       103 ~~~i~--~~~r~LDl~~G~l~r~~~~~~~G~~~~i~~~Rfvs~~~~~l~~~~~~i~~~n~~~~i~i~s~idg~v~n~~~~  180 (756)
T PRK13807        103 KCEVS--DFELELDMKEGVLTRSFTVLKNGKEVRVEAERFLSIAQKELAVIKYSVTSLNGEAKITFDSYLDGDVKNEDSN  180 (756)
T ss_pred             CCchh--eeEEEEEccceEEEEEEEEEECCeEEEEEEEEEecCCCCEEEEEEEEEEEcCCcEEEEEEecccCccccCCcc
Confidence            45677  9999999999999754  45345  6677889999998744 555  5663 45677777777664332100 


Q ss_pred             --------ee---cCCeEEEEEecCCCCCCCCCCCCCCCCceEEEEEEEEEEeCCce----eEEEecCC------eEEEe
Q 003571          187 --------VN---GNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRG----TISALEDK------KLKVE  245 (810)
Q Consensus       187 --------~~---~~~~l~~~g~~~~~~~~~~~~~~~~~~g~~f~~~~~v~~~g~~g----~v~~~~~~------~l~v~  245 (810)
                              ..   ..+.+.+..++...          .......+..+.+. .+..+    .+.. ...      ++.++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~l~~~T~~s----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~i~~~~~~~l~  248 (756)
T PRK13807        181 YDEKFWQVLEKGADATRAFIVTKTKPN----------PFGVPQFTVAAKMS-NRTNGKVVPGVET-KEKYVENSFTADVK  248 (756)
T ss_pred             hhhhcceeecccccCCCcEEEEEEecC----------CCcceeEEEEEeee-ccccccccceeec-cCcEEEEEEEEEEc
Confidence                    00   11111222221110          00011222222211 11001    1111 122      24567


Q ss_pred             CCcEEEE--EEEeeecCCCCCCCCCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhhcceeEEecCCCCCccccc
Q 003571          246 GSDWAVL--LLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDT  323 (810)
Q Consensus       246 ~a~~v~l--~~~~~T~~~~~~~~~~~~~~~~~~~a~~~l~~a~~~~y~~l~~~H~~~w~~~w~r~~i~l~~~~~~~~~~~  323 (810)
                      .+++++|  ++++.|+.+.  .     ..++...|.+.+..+...+|++|+++|++.|+++|++++|+|+|++.      
T Consensus       249 ~g~~~~leK~v~v~ts~d~--~-----~~~~~~~a~~~~~~a~~~g~d~l~~~h~~~w~~~W~~~di~I~gd~~------  315 (756)
T PRK13807        249 AGETVTLEKRVIVVTSRDY--E-----ESELLKAAEDLLNKAAEKGFEELLAAHTAAWAKRWEKSDVVIEGDDA------  315 (756)
T ss_pred             CCCEEEEEEEEEEEECCCC--C-----chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHCCeEEcCCHH------
Confidence            8888887  7787787652  1     34556778888888888899999999999999999999999987641      


Q ss_pred             CcccccCCCChHHHHhhccCCCChHHHHHHHHHHHHHHhhcCC--CC--CCC-CCCccccCCCCCCCCCCCccccccccc
Q 003571          324 CSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSR--PG--TQV-ANLQGIWNEDLSPTWDSAPHVNINLEM  398 (810)
Q Consensus       324 ~~~~~~~~~~t~~rl~~~~~~~d~~L~~l~f~~grYllisssr--~g--~~p-~~LqGlW~~~~~~~W~g~yh~niN~qm  398 (810)
                                 .|+.               .+|+.|+|.++.+  ..  ++| .||+|   +    .+.|  |++|++|+
T Consensus       316 -----------~q~a---------------lr~~~fhL~~s~~~~~~~~~i~a~GLsg---e----~Y~G--h~FWDtE~  360 (756)
T PRK13807        316 -----------AQQG---------------IRFNIFQLFSTYYGEDARLNIGPKGFTG---E----KYGG--ATYWDTEA  360 (756)
T ss_pred             -----------HHHH---------------HHHHHHHHHhccCCCCCCCCcCCCCCCc---C----CcCC--eeeeccch
Confidence                       3333               4567777776642  22  233 35666   3    6788  55677999


Q ss_pred             ccccc-cCCCchhhhHHHHHHHHHhHHHHHHHHHHhcCCCceEEcccCCcCCCCCCCCCCccccc---CccCHHHHHHHH
Q 003571          399 NYWQS-LPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWAL---WPMGGAWLCTHL  474 (810)
Q Consensus       399 ~ywp~-~~~nl~e~~~pll~~~~~~l~~~r~~A~~~yG~~G~~~~~~td~w~~~~p~~~~~~~~~---~~~~~awla~~l  474 (810)
                      ++.|+ +....||.++.||+||++.|+.||++|++ +|++||+|||.+. -|.    +.++.|..   --..+++||+++
T Consensus       361 f~lP~~~~~~~Pe~Ar~lL~YR~~~L~~Ar~~A~~-~g~~GA~yPW~s~-~G~----E~~~~w~~~~~e~HI~adIaya~  434 (756)
T PRK13807        361 YCVPFYLATADPEVTRNLLKYRYNQLPGAKENAKK-QGLKGALYPMVTF-NGI----ECHNEWEITFEEIHRNGAIAYAI  434 (756)
T ss_pred             hhhhhhhhccCHHHHHHHHHHHHHhHHHHHHHHHH-cCCCccccceEcC-CCC----cCCCCcCCCceeEechHHHHHHH
Confidence            99998 56899999999999999999999999999 7999999998763 221    12333321   122489999999


Q ss_pred             HHHHhhcCCHHHHHhhhHHHHHHHHHHHHHhhccCC-CCeEEECCCCCC-CCCcCCCCCCccccccCcHHHHHHHHHHHH
Q 003571          475 WEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGH-DGYLETNPSTSP-EHEFIAPDGKLACVSYSSTMDMAIIREVFS  552 (810)
Q Consensus       475 w~~y~~T~D~~fL~~~~~pil~~~A~F~~~~l~~~~-~G~y~~~ps~sP-E~~~~~~~g~~~~~~~n~t~d~~~~r~l~~  552 (810)
                      |+||..|+|.+||+++|+|||.|+|+||.+++.+++ +|+|+|..+++| |++.         .++||+|||.|++++|+
T Consensus       435 ~~Y~~~TgD~~fl~~~G~e~l~etArfw~s~~~~~~~~~~y~I~~V~GPDEY~~---------~vdNNayTN~ma~~~l~  505 (756)
T PRK13807        435 YNYTNYTGDESYLKEEGLEVLVEIARFWADRVHFSKRKNKYMIHGVTGPNEYEN---------NVNNNWYTNYIAAWTLE  505 (756)
T ss_pred             HHHHHHhCCHHHHHhcCHHHHHHHHHHHHHheEEeCCCCeEEECCcccccccCC---------CCCCchhHHHHHHHHHH
Confidence            999999999999999999999999999999999865 789999999999 7762         58999999999999999


Q ss_pred             HHHHHHHH--------hCCCchHHHHHHHHHcCCCC-CCCCCCCCc---------eeeeccC-CCC---CCCCCCccc--
Q 003571          553 AIISAAEV--------LEKNEDALVEKVLKSLPRLR-PTKIAEDGS---------IMEWAQD-FKD---PEVHHRHLS--  608 (810)
Q Consensus       553 ~~~~~~~~--------Lg~~~~~~~~~w~~i~~~L~-p~~~~~~G~---------l~ew~~~-~~~---~~~~hrh~s--  608 (810)
                      .++++++.        |+++ +++.++|++++++|. |+. ...|.         +++|+.+ +..   +...|.|..  
T Consensus       506 ~A~~~~~~l~~~~~~~l~~~-~~e~~~w~~ia~~~~lp~~-~~~gi~~q~dgy~~l~~~d~~~~~~~~~~~~~~~~~~~i  583 (756)
T PRK13807        506 YTLENLDKVKKEAPARLNVT-EEELAKWQDIVDKMYLPYD-EELGIFVQHDGFLDKDLRPVSDLPPDQRPINQNWSWDRI  583 (756)
T ss_pred             HHHHHHHHhchhhHHHhcCC-HHHHHHHHHHHhCeEeccc-CCCCEEEccCCccccccCchhhcccccCCcccccCHHHH
Confidence            99998864        4555 667889999999999 543 22342         3333211 110   011122211  


Q ss_pred             ----------cccccCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCcHHHHHHHHHHhcCChhHHHHHHHHHhhccCCcc
Q 003571          609 ----------HLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEH  678 (810)
Q Consensus       609 ----------hL~~l~P~~~i~~~~~p~l~~aa~~tl~~rg~~~sgws~~~~a~~aARLgd~e~A~~~l~~~l~~~~~~~  678 (810)
                                -++.+||...   ..+++.++....+|++|+.|+|++|++++++++||+|+.++|+++|++.+. +|+++
T Consensus       584 ~~~qviKQADvvll~yll~~---~f~~~~~~~n~~yYe~rT~HdSsLS~~i~ai~aa~~g~~~~A~~~f~~a~~-~Dl~~  659 (756)
T PRK13807        584 LRSPFIKQADVLQGIYFFED---RFTKEEKRRNFDFYEPLTVHESSLSPCVHSILAAELGKEDKAVELYLRTAR-LDLDN  659 (756)
T ss_pred             hcccEecHHHHHHHhccCCC---CCCHHHHHHHHHHhcCcccCCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHH-hhhhh
Confidence                      1345555532   257788888899999999999999999999999999999999999999988 45443


Q ss_pred             cccCCCCcccccccCCCCccccc-cchHHHHHHHHHhhcc------CCeEEECCCCCcccccCceeeceEeecc-EEEEE
Q 003571          679 EKHFEGGLYSNLFAAHPPFQIDA-NFGFTAAVAEMLVQST------LNDLYLLPALPWDKWSSGCVKGLKARGG-ETVSI  750 (810)
Q Consensus       679 ~~~~~~~~~~nl~~~h~pfqidg-n~g~~agi~emLlqs~------~g~i~llPalP~~~W~~g~~~gL~arG~-~~V~~  750 (810)
                      ..   +.+.            +| +.+.++|.+.++++..      .+.|+|.|.|| +.|+..+|+ ++.||. +.|.+
T Consensus       660 ~~---~~t~------------~GiH~~~~gG~w~~vv~Gf~Glr~~~~~L~~~P~LP-~~w~~l~f~-~~~rG~~l~v~i  722 (756)
T PRK13807        660 YN---NDTE------------DGLHITSMAGSWLAIVQGFAGMRVRDGQLSFAPFLP-KEWTSYSFK-INFRGRLLKVKV  722 (756)
T ss_pred             cc---CCCC------------cchhhhcchHHHHHHHheecceEecCCeEEEeCCCC-CccceeEEE-EEECCeEEEEEE
Confidence            21   1111            12 4688899999998764      46799999999 999999997 999987 45555


Q ss_pred             EEeCCcEEEEEEEeCCCCCccceeeeeecCCeEEEEEccCCeEEEE
Q 003571          751 CWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTF  796 (810)
Q Consensus       751 ~w~~g~~~~v~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~i  796 (810)
                        ...+   ++|+...+..++   +.+.+  ..  +.+.+|++.++
T Consensus       723 --~~~~---~~i~~~~g~~l~---i~v~g--~~--~~l~~g~~~~~  756 (756)
T PRK13807        723 --DKQE---VTIELLSGEPLT---IEVYG--KK--VELKKGVTVTV  756 (756)
T ss_pred             --ECCE---EEEEEcCCCcEE---EEECC--EE--EEEcCCcEeeC
Confidence              4444   345555555566   44432  33  44457777653

>COG1554 ATH1 Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF14498 Glyco_hyd_65N_2: Glycosyl hydrolase family 65, N-terminal domain; PDB: 2EAE_A 2EAB_B 2EAC_A 2EAD_B 2RDY_A	Back alignment and domain information

>PF03632 Glyco_hydro_65m: Glycosyl hydrolase family 65 central catalytic domain; InterPro: IPR005195 O-Glycosyl hydrolases 3	Back alignment and domain information

>KOG4125 consensus Acid trehalase [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR01577 oligosac_amyl oligosaccharide amylase	Back alignment and domain information

>PF10222 DUF2152: Uncharacterized conserved protein (DUF2152); InterPro: IPR018795 This entry includes mainly uncharacterised proteins, though some are described as belonging to the glycoside hydrolase family 65	Back alignment and domain information

>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes	Back alignment and domain information

>COG3459 Cellobiose phosphorylase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF03636 Glyco_hydro_65N: Glycosyl hydrolase family 65, N-terminal domain ; InterPro: IPR005196 O-Glycosyl hydrolases 3	Back alignment and domain information

>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []	Back alignment and domain information

>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT	Back alignment and domain information

>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase	Back alignment and domain information

>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3	Back alignment and domain information

>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG4354 Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative	Back alignment and domain information

>PRK13271 treA trehalase; Provisional	Back alignment and domain information

>PRK13272 treA trehalase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		810
2rdy_A		803	Crystal Structure Of A Putative Glycoside Hydrolase		1e-171
2eab_A		899	Crystal Structure Of 1,2-A-L-Fucosidase From Bifido		7e-82
2ead_A		899	Crystal Structure Of 1,2-A-L-Fucosidase From Bifido		3e-81
2eae_A		898	Crystal Structure Of 1,2-A-L-Fucosidase From Bifido		6e-81

>pdb|2RDY|A Chain A, Crystal Structure Of A Putative Glycoside Hydrolase Family Protein From Bacillus Halodurans Length = 803

Back alignment and structure

Iteration: 1

Score = 598 bits (1541), Expect = e-171, Method: Compositional matrix adjust. Identities = 328/766 (42%), Positives = 442/766 (57%), Gaps = 38/766 (4%) Query: 13 LKITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYTNPDAPKAL 72 LKI F+ PA +T+A+PIGNG LGA V+G V E + LNEDTLW+G P D+ NP A + L Sbjct: 3 LKIQFDFPASFWTEALPIGNGNLGAXVFGKVEKERIALNEDTLWSGYPKDWNNPKAKEVL 62 Query: 73 SDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLNT 132 VR L+ +Y EA S G Y GD+ + D H + Y RELDL+T Sbjct: 63 PKVRELIAQEKYEEADQLSRDXXGPYTQSYLPFGDLNIFXD--HGQVVAPHYHRELDLST 120 Query: 133 ATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQ 192 V Y++G V++TRE F + PD+ IV +++ S+ G LSF LDSLL + S V G Sbjct: 121 GIVTVTYTIGGVQYTRELFVTYPDRAIVVRLTASKEGFLSFRAKLDSLLRHVSSV-GAEH 179 Query: 193 IIMEGRCP--------GKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKV 244 + G P + P + D +G F L + + G ++ L V Sbjct: 180 YTISGTAPEHVSPSYYDEENPVRYGHPDXSQGXTFHGRL---AAVNEGGSLKVDADGLHV 236 Query: 245 EGSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKL 304 G+ A L AS+SFD P S ++DP+ ++ +++I Y ++ RHL+DY KL Sbjct: 237 XGATCATLYFSASTSFD-PSTGASCLERDPSLRTIETIKAICKRGYKEIVNRHLEDYTKL 295 Query: 305 FHRVSIQLSRS--PKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLI 362 F+RVS+ L S P D TD +R+K + + D LVELLFQ+GRYL I Sbjct: 296 FNRVSLHLGESIAPADXSTD-------------QRIKEYGS-RDLGLVELLFQYGRYLXI 341 Query: 363 SSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYL 422 +SSRPGTQ ANLQGIWNE+ W S +NIN E NYW + CNL+E +PL F+ L Sbjct: 342 ASSRPGTQPANLQGIWNEETRAPWSSNYTLNINAEXNYWPAETCNLAELHKPLIHFIERL 401 Query: 423 SINGSKTAQVNYLASGWVIHHKTDIWAKSSA----DRGKVVWALWPMGGAWLCTHLWEHY 478 + NG KTA++NY A GWV HH D+W +++ G VWA WP GG WL HLWEHY Sbjct: 402 AANGKKTAEINYGARGWVAHHNADLWGQTAPVGDFGHGDPVWAFWPXGGVWLTQHLWEHY 461 Query: 479 NYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSY 538 + D +L AYP+ + A F LDWLIE GYL T+PSTSPE F + K VS Sbjct: 462 TFGEDEAYLRDTAYPIXKEAALFCLDWLIENEAGYLVTSPSTSPEQRFRIGE-KGYAVSS 520 Query: 539 SSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFK 598 ++T D+++I E F I AA+ L +ED V+ + + RL P +I + G + EW+ DF+ Sbjct: 521 ATTXDLSLIAECFDNCIQAAKRLSIDED-FVKALSDAKQRLLPLQIGKRGQLQEWSNDFE 579 Query: 599 DPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLH 658 D +VHHRH+SHL G++PG IT + P+L +AA+ +L+ RG+EG GWS+ WK +LWAR Sbjct: 580 DEDVHHRHVSHLVGIYPGRLITEQSAPNLFEAAKTSLEIRGDEGTGWSLGWKISLWARFK 639 Query: 659 DQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTL 718 D R++ L+ + GG+Y+NLF AHPPFQID NF TA +AE L+QS Sbjct: 640 DGNRCERLLSNXLTLIKEDESXQHRGGVYANLFGAHPPFQIDGNFSATAGIAEXLLQSHQ 699 Query: 719 NDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYS 764 L LPALP D W G VKGL+ RGG V + W +G L +V I S Sbjct: 700 GYLEFLPALP-DSWKDGYVKGLRGRGGYEVDLAWTNGALVKVEIVS 744

PyMOL of 2rdy

>pdb|2EAB|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From Bifidobacterium Bifidum (Apo Form) Length = 899

Back alignment and structure

>pdb|2EAD|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From Bifidobacterium Bifidum In Complex With Substrate Length = 899

Back alignment and structure

>pdb|2EAE|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From Bifidobacterium Bifidum In Complexes With Products Length = 898

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		810
2rdy_A		803	BH0842 protein; PSI-II, structural genomics, prote	0.0
2eab_A		899	Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifi	0.0
1h54_A		754	Maltose phosphorylase; hydrolase, maltose metaboli	6e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
3cih_A		739	Putative alpha-rhamnosidase; structural genomics,	7e-04

>2rdy_A BH0842 protein; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.03A {Bacillus halodurans c-125} Length = 803	Back alignment and structure

 Score =  710 bits (1833), Expect = 0.0
 Identities = 330/801 (41%), Positives = 455/801 (56%), Gaps = 37/801 (4%)

Query: 12  PLKITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYTNPDAPKA 71
            LKI F+ PA  +T+A+PIGNG LGAMV+G V  E + LNEDTLW+G P D+ NP A + 
Sbjct: 2   SLKIQFDFPASFWTEALPIGNGNLGAMVFGKVEKERIALNEDTLWSGYPKDWNNPKAKEV 61

Query: 72  LSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLN 131
           L  VR L+   +Y EA   S  + G     Y   GD+ +  D   +      Y RELDL+
Sbjct: 62  LPKVRELIAQEKYEEADQLSRDMMGPYTQSYLPFGDLNIFMDHGQVVAPH--YHRELDLS 119

Query: 132 TATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNN 191
           T    V Y++G V++TRE F + PD+ IV +++ S+ G LSF   LDSLL + S V G  
Sbjct: 120 TGIVTVTYTIGGVQYTRELFVTYPDRAIVVRLTASKEGFLSFRAKLDSLLRHVSSV-GAE 178

Query: 192 QIIMEGRCPGKRIPPKANAN--------DDPKGIQFSAILEIKISDDRGTISALEDKKLK 243
              + G  P    P   +          D  +G+ F   L        G++   +   L 
Sbjct: 179 HYTISGTAPEHVSPSYYDEENPVRYGHPDMSQGMTFHGRLAAVNEG--GSLKV-DADGLH 235

Query: 244 VEGSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQK 303
           V G+  A L   AS+SFD P    S  ++DP+  ++  +++I    Y ++  RHL+DY K
Sbjct: 236 VMGATCATLYFSASTSFD-PSTGASCLERDPSLRTIETIKAICKRGYKEIVNRHLEDYTK 294

Query: 304 LFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLIS 363
           LF+RVS+ L  S                + + +R+K + +  D  LVELLFQ+GRYL+I+
Sbjct: 295 LFNRVSLHLGESIAP-----------ADMSTDQRIKEYGS-RDLGLVELLFQYGRYLMIA 342

Query: 364 SSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLS 423
           SSRPGTQ ANLQGIWNE+    W S   +NIN EMNYW +  CNL+E  +PL  F+  L+
Sbjct: 343 SSRPGTQPANLQGIWNEETRAPWSSNYTLNINAEMNYWPAETCNLAELHKPLIHFIERLA 402

Query: 424 INGSKTAQVNYLASGWVIHHKTDIWAKSSA----DRGKVVWALWPMGGAWLCTHLWEHYN 479
            NG KTA++NY A GWV HH  D+W +++       G  VWA WPMGG WL  HLWEHY 
Sbjct: 403 ANGKKTAEINYGARGWVAHHNADLWGQTAPVGDFGHGDPVWAFWPMGGVWLTQHLWEHYT 462

Query: 480 YTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYS 539
           +  D  +L   AYP+++  A F LDWLIE   GYL T+PSTSPE  F   +   A  S +
Sbjct: 463 FGEDEAYLRDTAYPIMKEAALFCLDWLIENEAGYLVTSPSTSPEQRFRIGEKGYAV-SSA 521

Query: 540 STMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKD 599
           +TMD+++I E F   I AA+ L  +ED  V+ +  +  RL P +I + G + EW+ DF+D
Sbjct: 522 TTMDLSLIAECFDNCIQAAKRLSIDED-FVKALSDAKQRLLPLQIGKRGQLQEWSNDFED 580

Query: 600 PEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHD 659
            +VHHRH+SHL G++PG  IT +  P+L +AA+ +L+ RG+EG GWS+ WK +LWAR  D
Sbjct: 581 EDVHHRHVSHLVGIYPGRLITEQSAPNLFEAAKTSLEIRGDEGTGWSLGWKISLWARFKD 640

Query: 660 QEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLN 719
                R++  +  L+  +      GG+Y+NLF AHPPFQID NF  TA +AEML+QS   
Sbjct: 641 GNRCERLLSNMLTLIKEDESMQHRGGVYANLFGAHPPFQIDGNFSATAGIAEMLLQSHQG 700

Query: 720 DLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNN---DHDSFKT 776
            L  LPALP D W  G VKGL+ RGG  V + W +G L +V I S  +            
Sbjct: 701 YLEFLPALP-DSWKDGYVKGLRGRGGYEVDLAWTNGALVKVEIVSTKTQTCEVLTRISMR 759

Query: 777 LHYRGTSVKVNLSAGKIYTFN 797
           +   G  V+ ++      +F 
Sbjct: 760 ITESGEEVEGDVLDSGRMSFQ 780

PyMOL of 2rdy

>2eab_A Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifidobacterium bifidum} PDB: 2eac_A* 2ead_A* 2eae_A* Length = 899	Back alignment and structure

>1h54_A Maltose phosphorylase; hydrolase, maltose metabolism; 2.15A {Lactobacillus brevis} SCOP: a.102.1.4 b.30.5.3 Length = 754	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482} Length = 739	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		810
d1h54a1		485	a.102.1.4 (A:269-753) Lactobacillus maltose phosph	9e-83

>d1h54a1 a.102.1.4 (A:269-753) Lactobacillus maltose phosphorylase, central domain {Lactobacillus brevis [TaxId: 1580]} Length = 485	Back information, alignment and structure


class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Glycosyltransferase family 36 C-terminal domain
domain: Lactobacillus maltose phosphorylase, central domain
species: Lactobacillus brevis [TaxId: 1580]

 Score =  270 bits (692), Expect = 9e-83
 Identities = 55/508 (10%), Positives = 128/508 (25%), Gaps = 89/508 (17%)

Query: 269 DSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEEN 328
           D+++  T+        +   SY DL   H   + + + +  + +    +           
Sbjct: 1   DTQESLTAAMHQLSDKVAQSSYEDLLNAHTAIWAQRWEKSDVVIKGDDES---------- 50

Query: 329 IDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQVANL--QGIWNEDLSPTW 386
                                 +   +F  + L S+        N+  +G   E     +
Sbjct: 51  ----------------------QQGIRFNLFQLFSTYYGEDARLNIGPKGFTGEK----Y 84

Query: 387 DSAPHVNINLEMNYWQS-LPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKT 445
                   + E   +   L     +    L  +           AQ   L  G +    T
Sbjct: 85  G--GATYWDTEAFAFPVYLGITDPKVTRNLLMYRYKQLDGAYINAQEQGLK-GALFPMVT 141

Query: 446 DIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDW 505
               +   +    +          +   ++ +  YT D  ++      +L   + F  D 
Sbjct: 142 FDGIECHNEWE--ITFEEIHRNGDIAFAIYNYTRYTGDDSYVLHEGAKVLTEISRFWADR 199

Query: 506 LI-EGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKN 564
           +     +     +  T  +      D        +       +  +       A+ L+ +
Sbjct: 200 VHFSKRNNQYMIHGVTGADEYENNVDNNWDTNMLAQWTLKYTLEILGKVDQDTAKQLDVS 259

Query: 565 ED------ALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHT 618
           ++       +V+++     +     +  DG + +  +         R ++  +       
Sbjct: 260 DEEKTKWQDIVDRMYLPYDKDLNIFVQHDGFLDKDIEPVSSIPADQRPINQNWSWDKILR 319

Query: 619 ITIEKNPDL---------------CKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHA 663
               K  D+                KA     +         S    + L A LH ++ A
Sbjct: 320 SPYIKQGDVLQGIWDFIDDYTPEQKKANFDFYEPLTVHESSLSPAIHSVLAADLHYEDKA 379

Query: 664 YRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLV------QST 717
             +  R                   +L   +       +          +V      +  
Sbjct: 380 VELYSRT---------------ARLDLDNYNNDTTDGLHITSMTGAWIAVVQGFAGMRVR 424

Query: 718 LNDLYLLPALPWDKWSSGCVKGLKARGG 745
              L+  P LP   W+S   +    R  
Sbjct: 425 DGQLHYAPFLP-KTWTSYTFR-QVFRDR 450

PyMOL of d1h54a1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		810
d1h54a1		485	Lactobacillus maltose phosphorylase, central domai	100.0
d1v7wa1		531	Chitobiose phosphorylase ChbP {Vibrio proteolyticu	99.96
d1h54a2		268	Lactobacillus maltose phosphorylase, N-terminal do	97.17
d2d5ja1		377	Unsaturated glucuronyl hydrolase {Bacillus sp. GL1	94.57
d2jg0a1		511	Periplasmic trehalase TreA {Escherichia coli [TaxI	92.16

>d1h54a1 a.102.1.4 (A:269-753) Lactobacillus maltose phosphorylase, central domain {Lactobacillus brevis [TaxId: 1580]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Glycosyltransferase family 36 C-terminal domain
domain: Lactobacillus maltose phosphorylase, central domain
species: Lactobacillus brevis [TaxId: 1580]

Probab=100.00  E-value=0  Score=573.77  Aligned_cols=433  Identities=12%  Similarity=0.048  Sum_probs=365.6

Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHH
Q ss_conf             99499999999985609999999999999997342322996589987645667666668998388875014899958999
Q 003571          272 KDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVE  351 (810)
Q Consensus       272 ~d~~~~~~~~l~~a~~~~y~~l~~~H~~~w~~lw~r~~i~l~~~~~~~~~~~~~~~~~~~~pt~~rl~~~~~~~d~~L~~  351 (810)
                      +.+...+.+.++++++++|++|+++|+++|++||+|++|+|++++                               .|+ 
T Consensus         4 ~~~~~~~~~~~~~a~~~~y~~L~~~h~~~w~~~~~r~~i~l~~d~-------------------------------~l~-   51 (485)
T d1h54a1           4 ESLTAAMHQLSDKVAQSSYEDLLNAHTAIWAQRWEKSDVVIKGDD-------------------------------ESQ-   51 (485)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTCEEEESCH-------------------------------HHH-
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCH-------------------------------HHH-
T ss_conf             789999999999998679999999999999997487559908998-------------------------------999-


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999989876238999989997--3025899999989986322333231122237-99346459999999996798999
Q 003571          352 LLFQFGRYLLISSSRPGTQVANL--QGIWNEDLSPTWDSAPHVNINLEMNYWQSLP-CNLSECQEPLFDFLTYLSINGSK  428 (810)
Q Consensus       352 ~~f~~grYlLisssR~g~~P~~L--qGlWn~~~~~~W~g~yh~niN~qm~ywp~~~-~nl~e~~~~l~~~~~~~l~~~r~  428 (810)
                      ++|+++||+|+|++|++..|.++  +|+|++    .|.|++  +||+||+|||.+. +|+||+++++++|+.++++.+|+
T Consensus        52 ~~~~~~~Y~l~~s~~~~~~~~~~~~~Gl~~~----~~~G~~--~wd~~~~~~p~~l~~~~pe~~~~~~~~~~~~l~~ar~  125 (485)
T d1h54a1          52 QGIRFNLFQLFSTYYGEDARLNIGPKGFTGE----KYGGAT--YWDTEAFAFPVYLGITDPKVTRNLLMYRYKQLDGAYI  125 (485)
T ss_dssp             HHHHHHHHHHHHHCCSSCTTCCCCTTTTSCC----TTCSSB--CTHHHHTHHHHHHHHSCHHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC----CCCCCC--CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999980799899977789888899----998864--2407898899999702899999999999999999999


Q ss_pred             HHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99976299756983017867777889998522237367899999999998643989999752089999999999885203
Q 003571          429 TAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIE  508 (810)
Q Consensus       429 ~A~~~yG~~G~~~~~~td~wg~~~p~~~~~~~~~~~~~~awla~~lw~yY~~T~D~~fL~~~~yP~l~~~A~F~~~~l~~  508 (810)
                      +|++ |||+|+++|+.++.++...+  ..+.+..+...++|+++++|+||+||+|++||++++||+|+++|+||++++++
T Consensus       126 ~A~~-~g~~G~~~p~~~~~~~~~~~--~~~~~~~~~~~~~wi~~~~~~yy~~TgD~~~L~e~~~pll~e~a~F~~~~l~~  202 (485)
T d1h54a1         126 NAQE-QGLKGALFPMVTFDGIECHN--EWEITFEEIHRNGDIAFAIYNYTRYTGDDSYVLHEGAKVLTEISRFWADRVHF  202 (485)
T ss_dssp             HHHT-TTCCSCCCCSSBSSSSBCCC--CHHHHTTCTHHHHHHHHHHHHHHHHHCCCTTTTTHHHHHHHHHHHHHHHHCEE
T ss_pred             HHHH-HCCCCCCCCEECCCCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHEEE
T ss_conf             9998-34378745405789988788--99986100123558999999999863819999751308799999999841189


Q ss_pred             CC-CCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--------HHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf             89-9919988998888876789998532225918999999999999999--------99993879269999999980899
Q 003571          509 GH-DGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIIS--------AAEVLEKNEDALVEKVLKSLPRL  579 (810)
Q Consensus       509 ~~-~G~~~~~ps~sPE~~~~~~~g~~~~~~~n~t~d~~~ir~ll~~~~~--------a~~~Lg~~~~~~~~~w~~~~~~L  579 (810)
                      ++ +|+|++.+++|||+.+.        .+.|+.+++.++.+.+..+++        +++.|+++ .++.++|+++++||
T Consensus       203 ~~~~g~~~~~~~~~p~~~~~--------~~~~~~~~~~~~~~~l~~a~~~~~~l~~~~~~~l~~~-~~~~~~w~~~~~~L  273 (485)
T d1h54a1         203 SKRNNQYMIHGVTGADEYEN--------NVDNNWDTNMLAQWTLKYTLEILGKVDQDTAKQLDVS-DEEKTKWQDIVDRM  273 (485)
T ss_dssp             ETTTTEEECCSBCCSSTTSC--------SBSCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHCCC-HHHHHHHHHHHHTB
T ss_pred             ECCCCEEECCCCCCCCCCCC--------CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHCC
T ss_conf             58999583588885223566--------6678864343899999999999998689999983899-78999999999647


Q ss_pred             CCCC-------CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------------HHHHHHHHHHHHH
Q ss_conf             9998-------79998344324678999888873000023589987798899---------------7799999999744
Q 003571          580 RPTK-------IAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKN---------------PDLCKAAEKTLQK  637 (810)
Q Consensus       580 ~p~~-------i~~~G~l~ew~~~~~~~~~~hrh~s~L~~l~P~~~i~~~~~---------------p~l~~aa~~tl~~  637 (810)
                      +++.       ++.+|.+.+|.+++....++|||++|+++++|...+...++               +++.+++.+++..
T Consensus       274 ~~p~~~~~g~~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~  353 (485)
T d1h54a1         274 YLPYDKDLNIFVQHDGFLDKDIEPVSSIPADQRPINQNWSWDKILRSPYIKQGDVLQGIWDFIDDYTPEQKKANFDFYEP  353 (485)
T ss_dssp             CCCEETTTTEECSSTTGGGSCCCCGGGSCGGGCSGGGTSCHHHHHHSSCBSSCSHHHHHHHTTTSSCHHHHHHHHHHHGG
T ss_pred             CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             88977677860364665001026423368646871444264523475434668888513557776999999999999861


Q ss_pred             HCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH----
Q ss_conf             0899998079999999875299369999999986223976555578985456545899962254004999999987----
Q 003571          638 RGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEML----  713 (810)
Q Consensus       638 rg~~~sgws~~~~a~~~ARLgd~~~A~~~l~~~l~~~~~~~~~~~~~~~~~nl~~~h~pfqidgn~G~~agi~emL----  713 (810)
                      ++.+++|||.+|++++|||||++++|+++|.+.+.               .++++.|++|+.++|+|+++|+++||    
T Consensus       354 ~~~~~~~~s~~~~a~~~a~lg~~~~A~~~~~~~~~---------------~~l~~~~~~~~~g~~~~~~ag~~~~l~~g~  418 (485)
T d1h54a1         354 LTVHESSLSPAIHSVLAADLHYEDKAVELYSRTAR---------------LDLDNYNNDTTDGLHITSMTGAWIAVVQGF  418 (485)
T ss_dssp             GBCCCSTTHHHHHHHHHHHTTCHHHHHHHHTTTTT---------------TTTTTTTSCGGGCCCGGGGGHHHHHHHTTT
T ss_pred             CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCC---------------CCHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             57899866899999999760657899999998610---------------164543999988732656999999999974


Q ss_pred             --HHCCCCEEEECCCCCCCCCCCCEEECEEEECCEEEEEEEECCCEEEEEEEECCCCCCCCEEEEEE
Q ss_conf             --20029928977999900126701202576311799999838907999999689997100024541
Q 003571          714 --VQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLH  778 (810)
Q Consensus       714 --lqs~~g~i~llPalP~~~W~~g~~~gL~arG~~~V~~~w~~g~l~~v~i~s~~~~~~~~~~~~~~  778 (810)
                        ||++.|.|+|+|||| ++|++++|+ +++||++ ++++|+...+ ++++.+  |.+|+   |++.
T Consensus       419 ~Glq~~~~~l~l~PalP-~~W~~~~~~-~~~rG~~-~~i~v~~~~~-~~~~~~--g~p~~---v~~~  476 (485)
T d1h54a1         419 AGMRVRDGQLHYAPFLP-KTWTSYTFR-QVFRDRL-IEVSVHADGP-HFKLLS--GEPLT---IDVA  476 (485)
T ss_dssp             SCCEEETTEEEECCCCC-TTCSEEEEE-EEETTEE-EEEEEETTEE-EEEEEE--SSCEE---EEET
T ss_pred             CCEEEECCEEEEECCCC-CCCCCCEEE-EEECCEE-EEEEEECCEE-EEEECC--CCEEE---EEEC
T ss_conf             55454689899968899-877721799-9999959-9999989958-999716--99079---9999

PyMOL of d1h54a1

>d1v7wa1 a.102.1.4 (A:271-801) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]}	Back information, alignment and structure

>d1h54a2 b.30.5.3 (A:1-268) Lactobacillus maltose phosphorylase, N-terminal domain {Lactobacillus brevis [TaxId: 1580]}	Back information, alignment and structure

>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]}	Back information, alignment and structure

>d2jg0a1 a.102.1.9 (A:37-547) Periplasmic trehalase TreA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure