Citrus Sinensis ID: 003578

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------81
MILQMSPFISGPTLLSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLPKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLVILI
cccccccccccccccccccccccHHHHHHccccccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccccccccccccccEEEccccccccccHHHHHcHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEccccEEEEEEEEccccccEEEEcccccccccccEEEEcccccccccccccEEEccccccccccEEcccccccccccccccccccccccHHHHHHHccccccEEEcccccccccccccccccHHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHcccEEEEccccHHHHHHHHccccccHHHHHHHcccccccEEEccccccEEEEcccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEEEccccccccccccccccccHHHHHHHHcHHHHHHHHHcccccccccccHHHHHHHccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccccccccEEEcccccccccccHHHHHHHHHHHHHHHcc
cccEcccccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHcccccccHccccccccHHHHHHHHHHHHHccccccccccccccEEEEEccccccccccHcHHHHHHHHHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccEEEccEEEEccccccccEccEEEEEEcccccEEEEEEEEcccccEEEEEEccccccccccEEEEccccHHHHHHcccEEEEEEEcccEcEEEEcccccccccccEEEEcccccccccHEcccccccEEEEEcccccEcccccccccccHHHHHHHHHHHHHHcccEEEEEccccccccccccccEEEEccccEEEEEccHHHHHHHHHHHccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccEEEEEcccHHccccccccccccccEEccccEccHHHHHHHHHHHccccccccHHHHHHHccEcEEEEEHHHHccHHHHHHHHHHHHHccccEcEEEEEccEEccccccccccccccccHHHHHHHccHHHHHHHHHcccccccEEccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHccHHHHHccHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccEEEEcccccccHHccHHHHHHHHHHHHHHHcc
milqmspfisgptllssyrlnpllfskrqrcmklphwhfnrtKQRFFAVAAaennkdtlpktfdftseERIYNWWesqgyfkpnfergsdpfvismpppnvtgslhmghAMFVTLEDIMVRYHRmkgrptlwlpgtdhagIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLgascdwtrerftLDEQLSRAVVEAFIRLHEKGLiyqgsymvnwspnlQTAVSDLEveyseepgtlYYIKYRVAgrsdfltiattrpetlfgdvalavnpqdehysqFIGMMAIvpmtygrhvpiisdkyvdkefgtgvlkispghdhndYLLARKlglpilnvmnkdgtlnEVAGLFRGLDRFEARKKLWSDLEETglavkkephtlrvprsqrggevieplvskqwfvTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQlwwghripvwyivgkeEEYIVARNADEALEKAHQKYGknveiyqdpdvldtwfssalwpfstlgwpdvsaddfkkfypttmletgHDILFFWVARMVMMGIEftgsvpfshvylhglirdsqgrkmsktlgnvidpidtiKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFilqnlpsqndiSRWEILLAykfdeeeclckaplpecwvvsKLHMLIDTVTAsydkyffgdvgretYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEalivspwpqtslprhMSAIKRFENLQSLVILI
milqmspfisgptllsSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAaaennkdtlpktfdftsEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAegikrvelsrdeftKRVWEwkekyggtitsqikrlgascDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEetglavkkephtlrvprsqrggeviEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFIlqnlpsqndiSRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEAlivspwpqtslprhmsaiKRFENLQSLVILI
MILQMSPFISGPTLLSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLPKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLVILI
*******FISGPTLLSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLPKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAV***************GEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLVI**
*******************L*PLLF***************************************FTSEERIYNWWESQGYFKPN*ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGI*RVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYR*EYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLVILI
MILQMSPFISGPTLLSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLPKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLVILI
*ILQMSPFISGPTLLSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLPKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMS*TLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLVILI
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MILQMSPFISGPTLLSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLPKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLVILI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query809 2.2.26 [Sep-21-2011]
Q3AF87 878 Valine--tRNA ligase OS=Ca yes no 0.893 0.823 0.501 0.0
Q8RBN5 879 Valine--tRNA ligase OS=Th yes no 0.865 0.796 0.491 0.0
Q97GG8 881 Valine--tRNA ligase OS=Cl yes no 0.898 0.825 0.479 0.0
P11931 880 Valine--tRNA ligase OS=Ge N/A no 0.894 0.822 0.482 0.0
Q8YX97 1014 Valine--tRNA ligase OS=No yes no 0.897 0.715 0.482 0.0
Q5KWL3 880 Valine--tRNA ligase OS=Ge yes no 0.894 0.822 0.481 0.0
Q72ZW8 881 Valine--tRNA ligase OS=Ba yes no 0.873 0.802 0.490 0.0
Q633Y6 881 Valine--tRNA ligase OS=Ba yes no 0.873 0.802 0.489 0.0
Q6HD68 881 Valine--tRNA ligase OS=Ba yes no 0.873 0.802 0.489 0.0
Q81LD3 881 Valine--tRNA ligase OS=Ba yes no 0.873 0.802 0.487 0.0
>sp|Q3AF87|SYV_CARHZ Valine--tRNA ligase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=valS PE=3 SV=1 Back     alignment and function desciption
 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/754 (50%), Positives = 507/754 (67%), Gaps = 31/754 (4%)

Query: 58  TLPKTFDFTSEERI-YNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLE 116
           TLP  +     ER  Y +WE  G+F    +   +PF I MPPPNVTG LHMGHA+  T++
Sbjct: 4   TLPSVYSPQEVERKWYKYWEENGFFHTEPDE-REPFCIVMPPPNVTGQLHMGHALDNTMQ 62

Query: 117 DIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEK 176
           DI+ RY RM+G  TLWLPGTDHAGIATQ  VE+ L  EG+ + +L R++F +RVW WKE 
Sbjct: 63  DILARYKRMQGFNTLWLPGTDHAGIATQAKVEEELRKEGLTKDDLGREKFLERVWAWKEN 122

Query: 177 YGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQ 236
           YG  IT Q++ LGASCDW RERFTLDE  S AV E F+RL+EKGLIY+  Y+ NW P+ +
Sbjct: 123 YGNRITEQLRTLGASCDWKRERFTLDEGCSEAVKEVFLRLYEKGLIYRDYYITNWCPHCK 182

Query: 237 TAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFI 296
           T +SD+EVE+ E  G LYYI Y +   S +LT+ATTRPET+ GD A+AV+P+DE Y + I
Sbjct: 183 TTISDIEVEHLEREGKLYYINYPLEDGSGYLTVATTRPETMLGDTAVAVHPEDERYRELI 242

Query: 297 GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDG 356
           G   I+P+   R +P+I+D+YVDKEFGTG +KI+P HD ND+ +  +  LP + V++ D 
Sbjct: 243 GKNVILPLV-NRPIPVIADEYVDKEFGTGAVKITPAHDPNDFEVGLRHKLPQVVVLDDDA 301

Query: 357 TLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWF 416
            +NE AG +RGLDR+EARKK+  DL++ GL VK+E  T  V    R   VIEP +SKQWF
Sbjct: 302 VMNENAGKYRGLDRYEARKKIVEDLKDLGLLVKEEEITHSVGHCYRCDTVIEPRLSKQWF 361

Query: 417 VTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK 476
           V M+PLAE A+ A   G++  +PERF KIY +WL NI+DWCISRQLWWGHRIPVWY   +
Sbjct: 362 VKMKPLAEPAIEAALTGKVKFVPERFTKIYLNWLYNIRDWCISRQLWWGHRIPVWY-CDE 420

Query: 477 EEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKK 536
             E I +R   ++  K      ++ +++QDPDVLDTWFSSALWPFSTLGWP  + ++ K 
Sbjct: 421 CGEVIPSREEVKSCPKC-----QSTKVHQDPDVLDTWFSSALWPFSTLGWPQ-NTEELKY 474

Query: 537 FYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVID 596
           +YPT++L TG DI+FFWVARM+ MG+EF   VPF  V +HGL+ D+QGRKMSK+LGN +D
Sbjct: 475 YYPTSVLVTGRDIIFFWVARMLFMGLEFMKEVPFKEVLIHGLVLDAQGRKMSKSLGNGVD 534

Query: 597 PIDTIKEFGADALRFTISLG-TAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLP--SQ 653
           P++ I   GAD+LRF +  G T G DL    ERL   + F NKLWNA +F+L NL   + 
Sbjct: 535 PVEVIASHGADSLRFMLVTGNTPGNDLRFHFERLDGARNFANKLWNASRFVLMNLEGFTP 594

Query: 654 NDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDF 713
             I + E+ LA +               W++++L+ +ID VTA  D+Y  G+  RE Y+F
Sbjct: 595 QGIKQEELTLADR---------------WILARLNAVIDRVTAFLDEYELGEAARELYEF 639

Query: 714 FWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLR 773
            W +F DWY+E +K RLY      D   A+ VL  + +  L+LLHPFMPF+TEE+WQ L 
Sbjct: 640 IWDEFCDWYVELTKPRLYGKMPGGDT--AREVLYAVLKTTLELLHPFMPFITEEIWQRLP 697

Query: 774 KRKEALIVSPWPQTSLP-RHMSAIKRFENLQSLV 806
              + ++++PWP+      +  A+K+  +L  ++
Sbjct: 698 HEGKTIMLAPWPKGRADYENPEAVKQMSSLMEVI 731
Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a "posttransfer" editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner.
Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) (taxid: 246194)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 9
>sp|Q8RBN5|SYV_THETN Valine--tRNA ligase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=valS PE=3 SV=1 Back     alignment and function description
>sp|Q97GG8|SYV_CLOAB Valine--tRNA ligase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=valS PE=3 SV=1 Back     alignment and function description
>sp|P11931|SYV_GEOSE Valine--tRNA ligase OS=Geobacillus stearothermophilus GN=valS PE=1 SV=1 Back     alignment and function description
>sp|Q8YX97|SYV_NOSS1 Valine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=valS PE=3 SV=1 Back     alignment and function description
>sp|Q5KWL3|SYV_GEOKA Valine--tRNA ligase OS=Geobacillus kaustophilus (strain HTA426) GN=valS PE=3 SV=1 Back     alignment and function description
>sp|Q72ZW8|SYV_BACC1 Valine--tRNA ligase OS=Bacillus cereus (strain ATCC 10987) GN=valS PE=3 SV=1 Back     alignment and function description
>sp|Q633Y6|SYV_BACCZ Valine--tRNA ligase OS=Bacillus cereus (strain ZK / E33L) GN=valS PE=3 SV=1 Back     alignment and function description
>sp|Q6HD68|SYV_BACHK Valine--tRNA ligase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=valS PE=3 SV=1 Back     alignment and function description
>sp|Q81LD3|SYV_BACAN Valine--tRNA ligase OS=Bacillus anthracis GN=valS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query809
359487063 959 PREDICTED: valyl-tRNA synthetase-like [V 0.981 0.827 0.855 0.0
359488299 958 PREDICTED: valyl-tRNA synthetase-like [V 0.981 0.828 0.854 0.0
296085363 963 unnamed protein product [Vitis vinifera] 0.981 0.824 0.848 0.0
224065184 951 predicted protein [Populus trichocarpa] 0.943 0.802 0.864 0.0
356563701 971 PREDICTED: valyl-tRNA synthetase-like [G 0.976 0.813 0.814 0.0
334187718 974 valyl-tRNA synthetase [Arabidopsis thali 0.949 0.788 0.832 0.0
449456259 923 PREDICTED: valine--tRNA ligase-like [Cuc 0.941 0.825 0.834 0.0
218199135 958 hypothetical protein OsI_25003 [Oryza sa 0.969 0.818 0.795 0.0
222636480 960 hypothetical protein OsJ_23192 [Oryza sa 0.969 0.816 0.791 0.0
242043012 977 hypothetical protein SORBIDRAFT_02g00365 0.924 0.765 0.797 0.0
>gi|359487063|ref|XP_002270806.2| PREDICTED: valyl-tRNA synthetase-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1434 bits (3711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 693/810 (85%), Positives = 743/810 (91%), Gaps = 16/810 (1%)

Query: 10  SGPTLLSS---YRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLP---KTF 63
           S P+LLSS   YRLNPLLFS R   ++L H H    K RFFAVAA EN+  T P   K+F
Sbjct: 4   STPSLLSSCSAYRLNPLLFSHRCLRIRLSHSHL---KPRFFAVAARENDVFTSPETAKSF 60

Query: 64  DFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYH 123
           DFTSEERIYNWW+SQGYFKPN +RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYH
Sbjct: 61  DFTSEERIYNWWDSQGYFKPNLDRGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYH 120

Query: 124 RMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITS 183
           RMKGRPTLW+PGTDHAGIATQLVVE+MLA+EGIKR ELSRDEFTKRVWEWKEKYGGTIT+
Sbjct: 121 RMKGRPTLWIPGTDHAGIATQLVVERMLASEGIKRAELSRDEFTKRVWEWKEKYGGTITN 180

Query: 184 QIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLE 243
           QIKRLGASCDWTRE FTLDE+LS AV+EAF+RLHE+GLIYQGSYMVNWSPNLQTAVSDLE
Sbjct: 181 QIKRLGASCDWTREHFTLDEKLSWAVIEAFVRLHERGLIYQGSYMVNWSPNLQTAVSDLE 240

Query: 244 VEYSEEPGTLYYIKYRVAG--RSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAI 301
           VEYSEEPGTLYYIKYRVAG  +SD+LTIATTRPETLFGD A+AV+PQD+ YS++IG MAI
Sbjct: 241 VEYSEEPGTLYYIKYRVAGGSKSDYLTIATTRPETLFGDTAIAVHPQDDRYSRYIGRMAI 300

Query: 302 VPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV 361
           VPMT+GRHVPIISD+YVDK+FGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV
Sbjct: 301 VPMTFGRHVPIISDRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV 360

Query: 362 AGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP 421
           AGL+RGLDRFEARKKLW DLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP
Sbjct: 361 AGLYRGLDRFEARKKLWLDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP 420

Query: 422 LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK--EEE 479
           LAEKAL AVE+GELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK  EEE
Sbjct: 421 LAEKALQAVERGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEE 480

Query: 480 YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYP 539
           YIVARNA+EALEKA +KYGK+VEIYQ+PDVLDTWFSSALWPFSTLGWPDVS  DFKKFYP
Sbjct: 481 YIVARNANEALEKAQEKYGKDVEIYQEPDVLDTWFSSALWPFSTLGWPDVSTQDFKKFYP 540

Query: 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID 599
           TT+LETGHDILFFWVARMVMMGIEFTG+VPFS+VYLHGLIRDSQGRKMSKTLGNVIDPID
Sbjct: 541 TTVLETGHDILFFWVARMVMMGIEFTGAVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPID 600

Query: 600 TIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRW 659
           TIKEFG DALRFT++LGTAGQDL+LS ERLT+NKAFTNKLWNAGKF+LQNLPSQ+DIS W
Sbjct: 601 TIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDISAW 660

Query: 660 EILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFA 719
           E +LA KFD+EE L + PLPECWVVSKLH LID VT SYDKYFFGDVGRETYDFFW DFA
Sbjct: 661 ETILACKFDKEEALLRLPLPECWVVSKLHCLIDMVTTSYDKYFFGDVGRETYDFFWGDFA 720

Query: 720 DWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEAL 779
           DWYIEASKARLY S   S   +AQAVLLY+FENILK+LHPFMPFVTE LWQ+L  RKEAL
Sbjct: 721 DWYIEASKARLYHSGGHS---VAQAVLLYVFENILKMLHPFMPFVTEALWQALPNRKEAL 777

Query: 780 IVSPWPQTSLPRHMSAIKRFENLQSLVILI 809
           + S WPQTSLP H S+IK+FENLQSL   I
Sbjct: 778 MNSSWPQTSLPMHASSIKKFENLQSLTRAI 807

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359488299|ref|XP_003633739.1| PREDICTED: valyl-tRNA synthetase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296085363|emb|CBI29095.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224065184|ref|XP_002301705.1| predicted protein [Populus trichocarpa] gi|222843431|gb|EEE80978.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356563701|ref|XP_003550098.1| PREDICTED: valyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|334187718|ref|NP_568337.4| valyl-tRNA synthetase [Arabidopsis thaliana] gi|332004946|gb|AED92329.1| valyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449456259|ref|XP_004145867.1| PREDICTED: valine--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|218199135|gb|EEC81562.1| hypothetical protein OsI_25003 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|222636480|gb|EEE66612.1| hypothetical protein OsJ_23192 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|242043012|ref|XP_002459377.1| hypothetical protein SORBIDRAFT_02g003650 [Sorghum bicolor] gi|241922754|gb|EER95898.1| hypothetical protein SORBIDRAFT_02g003650 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query809
TIGR_CMR|CBU_0808 920 CBU_0808 "valyl-tRNA synthetas 0.711 0.626 0.548 1.9e-201
TIGR_CMR|CHY_0334 878 CHY_0334 "valyl-tRNA synthetas 0.736 0.678 0.541 4.5e-178
TIGR_CMR|BA_4690 881 BA_4690 "valyl-tRNA synthetase 0.723 0.664 0.517 1.7e-171
UNIPROTKB|P67599 876 valS "Valine--tRNA ligase" [My 0.822 0.759 0.437 8.8e-171
TIGR_CMR|DET_0430 880 DET_0430 "valyl-tRNA synthetas 0.715 0.657 0.522 8.2e-170
TIGR_CMR|GSU_2045 887 GSU_2045 "valyl-tRNA synthetas 0.721 0.658 0.519 4.5e-169
CGD|CAL0003105 1119 VAS1 [Candida albicans (taxid: 0.449 0.325 0.465 4.6e-168
TIGR_CMR|CJE_0866 870 CJE_0866 "valyl-tRNA synthetas 0.793 0.737 0.446 2.1e-167
UNIPROTKB|E1BLV6 1001 VARS "Uncharacterized protein" 0.437 0.353 0.478 6.7e-163
UNIPROTKB|E2RTJ7 1264 VARS "Uncharacterized protein" 0.437 0.280 0.481 9.4e-163
TIGR_CMR|CBU_0808 CBU_0808 "valyl-tRNA synthetase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
 Score = 1680 (596.4 bits), Expect = 1.9e-201, Sum P(2) = 1.9e-201
 Identities = 322/587 (54%), Positives = 421/587 (71%)

Query:    59 LPKTFDFTSEERIY-NWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLED 117
             + KT+D  + E+ + ++WE +   KP  + GS P+ I +PPPNVTG+LHMGH    TL D
Sbjct:     1 MEKTYDPKAIEKKWADYWEKRQLSKPTAQ-GS-PYCIMLPPPNVTGTLHMGHGFQQTLMD 58

Query:   118 IMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKY 177
              ++RYHRMKG  TLW  GTDHAGIATQ+VVE+ LA E + R +L R  F KRVWEW+E+ 
Sbjct:    59 TLIRYHRMKGERTLWQGGTDHAGIATQMVVEQQLAQEDLTREDLGRQAFIKRVWEWRERS 118

Query:   178 GGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQT 237
             GG IT Q++RLG S DW+RERF++DE LSRA  EAFIRLH +GLIY+G  +VNW P L T
Sbjct:   119 GGKITHQMRRLGVSIDWSRERFSMDEGLSRATTEAFIRLHHEGLIYRGKRLVNWDPKLNT 178

Query:   238 AVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 297
             A+SDLEV   E  G L++I+Y +A  S  L IATTRPETL GDVA+AV+PQDE Y  F+G
Sbjct:   179 AISDLEVVTEEVEGHLWHIRYPLAEGSGHLIIATTRPETLLGDVAIAVHPQDERYQPFVG 238

Query:   298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 357
                 +P+T  R +P+I+D+ VDKEFGTG LKI+PGHD NDY + ++  LP++N++  +G 
Sbjct:   239 KKVRLPLT-DRTIPVIADEAVDKEFGTGSLKITPGHDFNDYEIGQRHQLPLINILTSEGY 297

Query:   358 LNE-VAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWF 416
             LNE V   +RGL+RFEARKK+ +DL+   L  K EP+ + VPR +R G +IEPL++ QWF
Sbjct:   298 LNENVPEPYRGLERFEARKKIIADLQRENLLEKTEPYRVPVPRGERSGVIIEPLLTDQWF 357

Query:   417 VTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK 476
             + ME LA+ A+ AVE GEL  +P+ +EK Y  WLSNI+DWCISRQLWWGHR+PVWY   +
Sbjct:   358 IKMEALAKPAMEAVESGELKFIPKNWEKTYLQWLSNIQDWCISRQLWWGHRLPVWY--DE 415

Query:   477 EEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKK 536
             E+   V R+ +E L+K H     +V++ Q+ DVLDTWFS++LWPF+TLGWP+   + FK 
Sbjct:   416 EKNSYVGRSREEILKKYH--LSPDVKLQQETDVLDTWFSASLWPFATLGWPE-KTESFKT 472

Query:   537 FYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVID 596
             FYPT +L TG DI+FFWVARMVMMG++ T  +PF  VY+HGLIRDSQGRKMSK+ GNVID
Sbjct:   473 FYPTQVLVTGFDIIFFWVARMVMMGLKLTHKIPFHSVYIHGLIRDSQGRKMSKSKGNVID 532

Query:   597 PIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAG 643
             PID I     DAL    +       ++ +IE++T  K F N + + G
Sbjct:   533 PIDIIDGISLDALIEKRTHALLQPKMAKTIEKMT-RKEFPNGIASFG 578
GO:0004832 "valine-tRNA ligase activity" evidence=ISS
GO:0006438 "valyl-tRNA aminoacylation" evidence=ISS
TIGR_CMR|CHY_0334 CHY_0334 "valyl-tRNA synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4690 BA_4690 "valyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|P67599 valS "Valine--tRNA ligase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0430 DET_0430 "valyl-tRNA synthetase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2045 GSU_2045 "valyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
CGD|CAL0003105 VAS1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0866 CJE_0866 "valyl-tRNA synthetase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
UNIPROTKB|E1BLV6 VARS "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RTJ7 VARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3A253SYV_PELCD6, ., 1, ., 1, ., 90.46790.89240.8031yesno
Q05873SYV_BACSU6, ., 1, ., 1, ., 90.47760.90230.8295yesno
Q5FKW5SYV_LACAC6, ., 1, ., 1, ., 90.47720.88000.8100yesno
Q65GK8SYV_BACLD6, ., 1, ., 1, ., 90.47690.87760.8068yesno
Q7UZI3SYV_PROMP6, ., 1, ., 1, ., 90.46920.91960.8104yesno
Q9X2D7SYV_THEMA6, ., 1, ., 1, ., 90.48850.87390.8173yesno
Q7NCQ9SYV_GLOVI6, ., 1, ., 1, ., 90.46730.90850.8193yesno
Q72ZW8SYV_BACC16, ., 1, ., 1, ., 90.49040.87390.8024yesno
Q817R6SYV_BACCR6, ., 1, ., 1, ., 90.48770.87390.8024yesno
Q6HD68SYV_BACHK6, ., 1, ., 1, ., 90.48910.87390.8024yesno
Q8XJ42SYV_CLOPE6, ., 1, ., 1, ., 90.47020.88990.8181yesno
Q8Y6X9SYV_LISMO6, ., 1, ., 1, ., 90.46280.88130.8074yesno
Q49Y96SYV_STAS16, ., 1, ., 1, ., 90.45740.87880.8116yesno
Q74JZ8SYV_LACJO6, ., 1, ., 1, ., 90.47730.88500.8145yesno
Q7U3N4SYV_SYNPX6, ., 1, ., 1, ., 90.47770.91340.8085yesno
Q92BG2SYV_LISIN6, ., 1, ., 1, ., 90.47360.87880.8061yesno
Q3AF87SYV_CARHZ6, ., 1, ., 1, ., 90.50130.89360.8234yesno
Q891R5SYV_CLOTE6, ., 1, ., 1, ., 90.45030.88000.8090yesno
Q8EPN2SYV_OCEIH6, ., 1, ., 1, ., 90.44790.89980.8244yesno
Q81LD3SYV_BACAN6, ., 1, ., 1, ., 90.48770.87390.8024yesno
Q97GG8SYV_CLOAB6, ., 1, ., 1, ., 90.47960.89860.8251yesno
Q73MZ2SYV_TREDE6, ., 1, ., 1, ., 90.47440.90600.8063yesno
A8F8Q3SYV_THELT6, ., 1, ., 1, ., 90.47970.87630.8234yesno
B7GH39SYV_ANOFW6, ., 1, ., 1, ., 90.47480.89240.8251yesno
Q633Y6SYV_BACCZ6, ., 1, ., 1, ., 90.48910.87390.8024yesno
Q5KWL3SYV_GEOKA6, ., 1, ., 1, ., 90.48140.89490.8227yesno
Q71ZB6SYV_LISMF6, ., 1, ., 1, ., 90.46540.87880.8052yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.90.824
3rd Layer6.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_II002297
aminoacyl-tRNA ligase (EC-6.1.1.9) (951 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.VII.52.1
branched-chain amino acid aminotransferase (EC-2.6.1.42) (338 aa)
     •• 0.919
estExt_Genewise1_v1.C_LG_II1818
hypothetical protein (319 aa)
     •• 0.915
fgenesh4_pm.C_LG_IX000386
hypothetical protein (339 aa)
     •• 0.914
gw1.1161.2.1
hypothetical protein (342 aa)
     •• 0.911
eugene3.00180323
aminodeoxychorismate lyase (EC-4.1.3.38) (295 aa)
     •• 0.910
estExt_fgenesh4_pm.C_LG_XI0275
aminodeoxychorismate lyase (EC-4.1.3.38) (339 aa)
     •  0.899
eugene3.00031274
aminoacyl-tRNA ligase (EC-6.1.1.2) (404 aa)
   •  • 0.799
gw1.28.724.1
histidine-tRNA ligase (EC-6.1.1.21) (441 aa)
•     • 0.783
eugene3.114390001
Predicted protein (351 aa)
      • 0.756
gw1.VIII.2106.1
threonine-tRNA ligase (EC-6.1.1.3) (669 aa)
•  •  • 0.748

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query809
PLN02943 958 PLN02943, PLN02943, aminoacyl-tRNA ligase 0.0
PRK05729 874 PRK05729, valS, valyl-tRNA synthetase; Reviewed 0.0
COG0525 877 COG0525, ValS, Valyl-tRNA synthetase [Translation, 0.0
TIGR00422 861 TIGR00422, valS, valyl-tRNA synthetase 0.0
PTZ00419 995 PTZ00419, PTZ00419, valyl-tRNA synthetase-like pro 0.0
PRK14900 1052 PRK14900, valS, valyl-tRNA synthetase; Provisional 0.0
PLN02381 1066 PLN02381, PLN02381, valyl-tRNA synthetase 0.0
pfam00133606 pfam00133, tRNA-synt_1, tRNA synthetases class I ( 0.0
PRK13208800 PRK13208, valS, valyl-tRNA synthetase; Reviewed 0.0
COG0060 933 COG0060, IleS, Isoleucyl-tRNA synthetase [Translat 1e-118
TIGR00392861 TIGR00392, ileS, isoleucyl-tRNA synthetase 1e-116
cd00817382 cd00817, ValRS_core, catalytic core domain of valy 1e-114
PRK06039 975 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewe 2e-98
cd00817382 cd00817, ValRS_core, catalytic core domain of valy 8e-85
PRK05743 912 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewe 4e-82
PRK13804 961 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisi 4e-70
cd07962135 cd07962, Anticodon_Ia_Val, Anticodon-binding domai 1e-50
COG0495814 COG0495, LeuS, Leucyl-tRNA synthetase [Translation 2e-50
TIGR00395 938 TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch 7e-49
cd00668312 cd00668, Ile_Leu_Val_MetRS_core, catalytic core do 1e-46
PLN02843 974 PLN02843, PLN02843, isoleucyl-tRNA synthetase 9e-46
TIGR00396842 TIGR00396, leuS_bact, leucyl-tRNA synthetase, euba 8e-40
cd00818338 cd00818, IleRS_core, catalytic core domain of isol 6e-36
cd00668312 cd00668, Ile_Leu_Val_MetRS_core, catalytic core do 1e-35
pfam08264148 pfam08264, Anticodon_1, Anticodon-binding domain o 1e-34
PTZ00427 1205 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putati 2e-34
PLN02882 1159 PLN02882, PLN02882, aminoacyl-tRNA ligase 3e-34
PRK12300 897 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed 4e-34
PRK00390805 PRK00390, leuS, leucyl-tRNA synthetase; Validated 2e-25
PLN02843 974 PLN02843, PLN02843, isoleucyl-tRNA synthetase 7e-25
cd00818338 cd00818, IleRS_core, catalytic core domain of isol 3e-18
PLN02563963 PLN02563, PLN02563, aminoacyl-tRNA ligase 3e-18
COG0143558 COG0143, MetG, Methionyl-tRNA synthetase [Translat 9e-18
cd07961183 cd07961, Anticodon_Ia_Ile_ABEc, Anticodon-binding 5e-17
cd00812314 cd00812, LeuRS_core, catalytic core domain of leuc 3e-16
pfam09334388 pfam09334, tRNA-synt_1g, tRNA synthetases class I 3e-16
cd07960180 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding d 1e-15
PRK12300 897 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed 1e-14
PLN02882 1159 PLN02882, PLN02882, aminoacyl-tRNA ligase 2e-14
PRK11893511 PRK11893, PRK11893, methionyl-tRNA synthetase; Rev 2e-14
PRK12267 648 PRK12267, PRK12267, methionyl-tRNA synthetase; Rev 6e-14
PRK00390805 PRK00390, leuS, leucyl-tRNA synthetase; Validated 7e-14
cd00814319 cd00814, MetRS_core, catalytic core domain of meth 2e-13
pfam13603178 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, 2e-13
cd00812314 cd00812, LeuRS_core, catalytic core domain of leuc 5e-13
TIGR00398530 TIGR00398, metG, methionyl-tRNA synthetase 1e-12
COG0143558 COG0143, MetG, Methionyl-tRNA synthetase [Translat 5e-12
pfam09334388 pfam09334, tRNA-synt_1g, tRNA synthetases class I 1e-11
cd00814319 cd00814, MetRS_core, catalytic core domain of meth 4e-11
PRK11893511 PRK11893, PRK11893, methionyl-tRNA synthetase; Rev 1e-10
TIGR00398530 TIGR00398, metG, methionyl-tRNA synthetase 2e-09
cd07959117 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding d 1e-08
PRK00133 673 PRK00133, metG, methionyl-tRNA synthetase; Reviewe 3e-08
PRK12267648 PRK12267, PRK12267, methionyl-tRNA synthetase; Rev 6e-08
PLN02959 1084 PLN02959, PLN02959, aminoacyl-tRNA ligase 3e-07
PRK12268556 PRK12268, PRK12268, methionyl-tRNA synthetase; Rev 4e-07
PRK12268556 PRK12268, PRK12268, methionyl-tRNA synthetase; Rev 6e-07
PTZ00427 1205 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putati 1e-06
cd07958117 cd07958, Anticodon_Ia_Leu_BEm, Anticodon-binding d 9e-06
PLN02224616 PLN02224, PLN02224, methionine-tRNA ligase 2e-05
cd07375117 cd07375, Anticodon_Ia_like, Anticodon-binding doma 2e-05
COG0215464 COG0215, CysS, Cysteinyl-tRNA synthetase [Translat 3e-05
PLN02563963 PLN02563, PLN02563, aminoacyl-tRNA ligase 7e-04
PRK00133673 PRK00133, metG, methionyl-tRNA synthetase; Reviewe 0.001
cd00672213 cd00672, CysRS_core, catalytic core domain of cyst 0.004
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase Back     alignment and domain information 
 Score = 1534 bits (3974), Expect = 0.0
 Identities = 681/807 (84%), Positives = 732/807 (90%), Gaps = 14/807 (1%)

Query: 6   SPFISGPTLLSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLP---KT 62
            P  +  +  S  RLNPLL S  +R    P     R  +RF A AA+EN+  T P   K+
Sbjct: 5   RPSSALLSCSSIRRLNPLLLSACRRRAWAP----RRAARRFCAAAASENDVFTSPETAKS 60

Query: 63  FDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRY 122
           FDFTSEERIYNWWESQGYFKPNF+RG DPFVI MPPPNVTGSLHMGHAMFVTLEDIMVRY
Sbjct: 61  FDFTSEERIYNWWESQGYFKPNFDRGGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRY 120

Query: 123 HRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTIT 182
           +RMKGRPTLW+PGTDHAGIATQLVVEKMLA+EGIKR +L RDEFTKRVWEWKEKYGGTIT
Sbjct: 121 NRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYGGTIT 180

Query: 183 SQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDL 242
           +QIKRLGASCDW+RERFTLDEQLSRAVVEAF+RLHEKGLIYQGSYMVNWSPNLQTAVSDL
Sbjct: 181 NQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDL 240

Query: 243 EVEYSEEPGTLYYIKYRVAGRS-DFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAI 301
           EVEYSEEPGTLYYIKYRVAG S DFLTIATTRPETLFGDVA+AVNP+D+ YS++IG MAI
Sbjct: 241 EVEYSEEPGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAI 300

Query: 302 VPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV 361
           VPMTYGRHVPII+D+YVDK+FGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV
Sbjct: 301 VPMTYGRHVPIIADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV 360

Query: 362 AGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP 421
           AGL+     FEAR+KLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP
Sbjct: 361 AGLYW----FEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP 416

Query: 422 LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK--EEE 479
           LAEKAL AVE GELTI+PERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK  EE+
Sbjct: 417 LAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEED 476

Query: 480 YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYP 539
           YIVAR+A+EALEKA +KYGK+VEIYQDPDVLDTWFSSALWPFSTLGWPDVSA+DFKKFYP
Sbjct: 477 YIVARSAEEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYP 536

Query: 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID 599
           TT+LETGHDILFFWVARMVMMGIEFTG+VPFS+VYLHGLIRDSQGRKMSKTLGNVIDP+D
Sbjct: 537 TTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLD 596

Query: 600 TIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRW 659
           TIKEFG DALRFT++LGTAGQDL+LS ERLT+NKAFTNKLWNAGKF+LQNLPSQ+D S W
Sbjct: 597 TIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAW 656

Query: 660 EILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFA 719
           E +LA KFD+EE L   PLPECWVVSKLH LID+VT SYDKYFFGDVGRE YDFFWSDFA
Sbjct: 657 EHILACKFDKEESLLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVGREIYDFFWSDFA 716

Query: 720 DWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEAL 779
           DWYIEASK RLY S  +S    AQAVLLY+FENILKLLHPFMPFVTEELWQ+L  RKEAL
Sbjct: 717 DWYIEASKTRLYHSGDNSALSRAQAVLLYVFENILKLLHPFMPFVTEELWQALPYRKEAL 776

Query: 780 IVSPWPQTSLPRHMSAIKRFENLQSLV 806
           IVSPWPQTSLP+ + +IKRFENLQSL 
Sbjct: 777 IVSPWPQTSLPKDLKSIKRFENLQSLT 803

Length = 958
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V) Back     alignment and domain information
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|153416 cd07962, Anticodon_Ia_Val, Anticodon-binding domain of valyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|219767 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA Back     alignment and domain information
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|153415 cd07961, Anticodon_Ia_Ile_ABEc, Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) Back     alignment and domain information
>gnl|CDD|153414 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|222257 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, Domain 2 Back     alignment and domain information
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) Back     alignment and domain information
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|153413 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>gnl|CDD|153412 cd07958, Anticodon_Ia_Leu_BEm, Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase Back     alignment and domain information
>gnl|CDD|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains Back     alignment and domain information
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 809
COG0525 877 ValS Valyl-tRNA synthetase [Translation, ribosomal 100.0
PLN02943 958 aminoacyl-tRNA ligase 100.0
KOG0432 995 consensus Valyl-tRNA synthetase [Translation, ribo 100.0
PLN02381 1066 valyl-tRNA synthetase 100.0
PTZ00419 995 valyl-tRNA synthetase-like protein; Provisional 100.0
PRK05729 874 valS valyl-tRNA synthetase; Reviewed 100.0
TIGR00422 861 valS valyl-tRNA synthetase. The valyl-tRNA synthet 100.0
PRK14900 1052 valS valyl-tRNA synthetase; Provisional 100.0
PRK06039 975 ileS isoleucyl-tRNA synthetase; Reviewed 100.0
COG0060 933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 100.0
PTZ00427 1205 isoleucine-tRNA ligase, putative; Provisional 100.0
PLN02882 1159 aminoacyl-tRNA ligase 100.0
PRK13804 961 ileS isoleucyl-tRNA synthetase; Provisional 100.0
PRK05743 912 ileS isoleucyl-tRNA synthetase; Reviewed 100.0
PRK13208800 valS valyl-tRNA synthetase; Reviewed 100.0
PLN02843 974 isoleucyl-tRNA synthetase 100.0
TIGR00392861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 100.0
PLN02959 1084 aminoacyl-tRNA ligase 100.0
TIGR00395 938 leuS_arch leucyl-tRNA synthetase, archaeal and cyt 100.0
PF00133601 tRNA-synt_1: tRNA synthetases class I (I, L, M and 100.0
KOG0433 937 consensus Isoleucyl-tRNA synthetase [Translation, 100.0
PLN02563963 aminoacyl-tRNA ligase 100.0
TIGR00396842 leuS_bact leucyl-tRNA synthetase, eubacterial and 100.0
PRK12300 897 leuS leucyl-tRNA synthetase; Reviewed 100.0
PRK00390805 leuS leucyl-tRNA synthetase; Validated 100.0
KOG0434 1070 consensus Isoleucyl-tRNA synthetase [Translation, 100.0
COG0495814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 100.0
KOG0435876 consensus Leucyl-tRNA synthetase [Translation, rib 100.0
PRK12268556 methionyl-tRNA synthetase; Reviewed 100.0
TIGR00398530 metG methionyl-tRNA synthetase. The methionyl-tRNA 100.0
cd00817382 ValRS_core catalytic core domain of valyl-tRNA syn 100.0
COG0143558 MetG Methionyl-tRNA synthetase [Translation, ribos 100.0
PLN02610 801 probable methionyl-tRNA synthetase 100.0
PRK00133 673 metG methionyl-tRNA synthetase; Reviewed 100.0
PRK12267 648 methionyl-tRNA synthetase; Reviewed 100.0
PLN02224616 methionine-tRNA ligase 100.0
PRK11893511 methionyl-tRNA synthetase; Reviewed 100.0
KOG0437 1080 consensus Leucyl-tRNA synthetase [Translation, rib 100.0
cd00818338 IleRS_core catalytic core domain of isoleucyl-tRNA 100.0
KOG0436578 consensus Methionyl-tRNA synthetase [Translation, 100.0
PF09334391 tRNA-synt_1g: tRNA synthetases class I (M); InterP 100.0
cd00668312 Ile_Leu_Val_MetRS_core catalytic core domain of is 100.0
cd00814319 MetRS_core catalytic core domain of methioninyl-tR 100.0
KOG1247567 consensus Methionyl-tRNA synthetase [Translation, 100.0
cd00812314 LeuRS_core catalytic core domain of leucyl-tRNA sy 100.0
PRK00260463 cysS cysteinyl-tRNA synthetase; Validated 100.0
TIGR00435465 cysS cysteinyl-tRNA synthetase. This model finds t 100.0
PTZ00399 651 cysteinyl-tRNA-synthetase; Provisional 100.0
TIGR03447411 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- 100.0
PRK14536490 cysS cysteinyl-tRNA synthetase; Provisional 100.0
PRK12418384 cysteinyl-tRNA synthetase; Provisional 100.0
PLN02946557 cysteine-tRNA ligase 100.0
PRK14535699 cysS cysteinyl-tRNA synthetase; Provisional 100.0
PRK14534481 cysS cysteinyl-tRNA synthetase; Provisional 100.0
COG0215464 CysS Cysteinyl-tRNA synthetase [Translation, ribos 100.0
cd00672213 CysRS_core catalytic core domain of cysteinyl tRNA 100.0
PRK01611507 argS arginyl-tRNA synthetase; Reviewed 100.0
KOG2007586 consensus Cysteinyl-tRNA synthetase [Translation, 99.97
PF01406300 tRNA-synt_1e: tRNA synthetases class I (C) catalyt 99.97
cd00674353 LysRS_core_class_I catalytic core domain of class 99.96
TIGR00456566 argS arginyl-tRNA synthetase. This model recognize 99.94
PRK00750510 lysK lysyl-tRNA synthetase; Reviewed 99.93
cd07961183 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of 99.91
PF13603185 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; P 99.9
cd07960180 Anticodon_Ia_Ile_BEm Anticodon-binding domain of b 99.9
COG0018577 ArgS Arginyl-tRNA synthetase [Translation, ribosom 99.89
TIGR00467515 lysS_arch lysyl-tRNA synthetase, archaeal and spir 99.88
PRK12451562 arginyl-tRNA synthetase; Reviewed 99.87
PLN02286576 arginine-tRNA ligase 99.86
cd00671212 ArgRS_core catalytic core domain of arginyl-tRNA s 99.82
PF08264153 Anticodon_1: Anticodon-binding domain of tRNA; Int 99.78
cd07962135 Anticodon_Ia_Val Anticodon-binding domain of valyl 99.63
PF00750354 tRNA-synt_1d: tRNA synthetases class I (R); InterP 99.63
cd07959117 Anticodon_Ia_Leu_AEc Anticodon-binding domain of a 99.55
cd07957129 Anticodon_Ia_Met Anticodon-binding domain of methi 99.53
cd07958117 Anticodon_Ia_Leu_BEm Anticodon-binding domain of b 99.46
PF01921360 tRNA-synt_1f: tRNA synthetases class I (K); InterP 99.38
COG1384521 LysS Lysyl-tRNA synthetase (class I) [Translation, 99.3
cd00802143 class_I_aaRS_core catalytic core domain of class I 99.26
PRK04156567 gltX glutamyl-tRNA synthetase; Provisional 99.2
cd07375117 Anticodon_Ia_like Anticodon-binding domain of clas 99.11
TIGR00464470 gltX_bact glutamyl-tRNA synthetase, bacterial fami 99.01
PRK01406476 gltX glutamyl-tRNA synthetase; Reviewed 98.87
TIGR00463560 gltX_arch glutamyl-tRNA synthetase, archaeal and e 98.83
PRK12558445 glutamyl-tRNA synthetase; Provisional 98.75
PRK05347554 glutaminyl-tRNA synthetase; Provisional 98.72
PLN03233523 putative glutamate-tRNA ligase; Provisional 98.69
PRK12410433 glutamylglutaminyl-tRNA synthetase; Provisional 98.69
PRK14703771 glutaminyl-tRNA synthetase/YqeY domain fusion prot 98.66
PLN02907722 glutamate-tRNA ligase 98.63
PTZ00437574 glutaminyl-tRNA synthetase; Provisional 98.63
PRK14895513 gltX glutamyl-tRNA synthetase; Provisional 98.63
PTZ00402601 glutamyl-tRNA synthetase; Provisional 98.6
TIGR00440522 glnS glutaminyl-tRNA synthetase. This protein is a 98.57
cd00418230 GlxRS_core catalytic core domain of glutamyl-tRNA 98.56
PLN02627535 glutamyl-tRNA synthetase 98.43
KOG1195567 consensus Arginyl-tRNA synthetase [Translation, ri 98.39
cd09287240 GluRS_non_core catalytic core domain of non-discri 98.31
KOG4426656 consensus Arginyl-tRNA synthetase [Translation, ri 98.18
TIGR03838272 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe 97.79
cd00807238 GlnRS_core catalytic core domain of glutaminyl-tRN 97.76
PF00749314 tRNA-synt_1c: tRNA synthetases class I (E and Q), 97.74
COG0008472 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr 97.58
PLN02859788 glutamine-tRNA ligase 97.57
PRK05710299 glutamyl-Q tRNA(Asp) synthetase; Reviewed 97.35
cd00808239 GluRS_core catalytic core domain of discriminating 97.3
cd07956156 Anticodon_Ia_Arg Anticodon-binding domain of argin 96.89
KOG1147712 consensus Glutamyl-tRNA synthetase [Translation, r 96.86
KOG1148764 consensus Glutaminyl-tRNA synthetase [Translation, 96.16
PRK13354410 tyrosyl-tRNA synthetase; Provisional 95.12
cd00802143 class_I_aaRS_core catalytic core domain of class I 94.84
PLN02563 963 aminoacyl-tRNA ligase 94.81
PRK05912408 tyrosyl-tRNA synthetase; Validated 94.67
cd00395273 Tyr_Trp_RS_core catalytic core domain of tyrosinyl 94.29
PF00579292 tRNA-synt_1b: tRNA synthetases class I (W and Y); 94.28
COG0495 814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 94.14
cd00808239 GluRS_core catalytic core domain of discriminating 94.09
cd00805269 TyrRS_core catalytic core domain of tyrosinyl-tRNA 93.99
PRK12284431 tryptophanyl-tRNA synthetase; Reviewed 93.71
PRK12556332 tryptophanyl-tRNA synthetase; Provisional 93.66
KOG1149524 consensus Glutamyl-tRNA synthetase (mitochondrial) 93.65
KOG0435 876 consensus Leucyl-tRNA synthetase [Translation, rib 92.93
TIGR00396 842 leuS_bact leucyl-tRNA synthetase, eubacterial and 92.34
PRK08560329 tyrosyl-tRNA synthetase; Validated 92.26
TIGR00233328 trpS tryptophanyl-tRNA synthetase. This model repr 91.85
PRK12285368 tryptophanyl-tRNA synthetase; Reviewed 91.31
COG0180314 TrpS Tryptophanyl-tRNA synthetase [Translation, ri 91.29
PRK00390 805 leuS leucyl-tRNA synthetase; Validated 91.29
PRK12282333 tryptophanyl-tRNA synthetase II; Reviewed 91.28
PTZ00126383 tyrosyl-tRNA synthetase; Provisional 90.55
cd00806280 TrpRS_core catalytic core domain of tryptophanyl-t 89.97
TIGR00234377 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy 89.2
COG0162401 TyrS Tyrosyl-tRNA synthetase [Translation, ribosom 88.73
PRK12285368 tryptophanyl-tRNA synthetase; Reviewed 88.67
PRK00927333 tryptophanyl-tRNA synthetase; Reviewed 88.25
PRK12283398 tryptophanyl-tRNA synthetase; Reviewed 87.71
cd00806280 TrpRS_core catalytic core domain of tryptophanyl-t 87.34
PF05746119 DALR_1: DALR anticodon binding domain; InterPro: I 87.22
cd00807238 GlnRS_core catalytic core domain of glutaminyl-tRN 87.02
cd09287240 GluRS_non_core catalytic core domain of non-discri 86.44
cd00395273 Tyr_Trp_RS_core catalytic core domain of tyrosinyl 86.29
PLN02486383 aminoacyl-tRNA ligase 85.73
PRK13354410 tyrosyl-tRNA synthetase; Provisional 84.94
cd00805269 TyrRS_core catalytic core domain of tyrosinyl-tRNA 84.44
PRK08560329 tyrosyl-tRNA synthetase; Validated 82.3
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-188  Score=1611.52  Aligned_cols=730  Identities=55%  Similarity=1.004  Sum_probs=686.3

Q ss_pred             CCCCCCh-hhHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCC
Q 003578           59 LPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD  137 (809)
Q Consensus        59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D  137 (809)
                      +|+.||| ++|++||++|++++.|++..+...++|+|.+||||+||.||||||+++++.|+++||+||+||+|+|++|||
T Consensus         1 ~~~~ydp~~iE~k~~~~W~~~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~D   80 (877)
T COG0525           1 LPKTYDPKEIEEKWYKKWEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTD   80 (877)
T ss_pred             CCCCCChhhhhHHHHHHHHhcCCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCC
Confidence            5789999 999999999999999999876542569999999999999999999999999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHH
Q 003578          138 HAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLH  217 (809)
Q Consensus       138 ~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~  217 (809)
                      |+|+|||.+||+.+.++|+++.+++||+|+++||+|++++.+.|++||++||+|+||+|+|||+||.+.++|+++|.+||
T Consensus        81 hAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly  160 (877)
T COG0525          81 HAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLY  160 (877)
T ss_pred             CCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHH
Confidence            99999999999999888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCceeecCcccccCCCCCcccCccccccccCCCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhccc
Q 003578          218 EKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIG  297 (809)
Q Consensus       218 ~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g  297 (809)
                      ++|||||++++|||||+|+|+|||.||+|++.+|.++||+|++.+++.+|+|||||||||+||+||||||+|+||++|+|
T Consensus       161 ~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvG  240 (877)
T COG0525         161 EKGLIYRGERLVNWCPKCRTAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVG  240 (877)
T ss_pred             HCCceeecCCcccCCCccccchhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeecCCCCCCeeeEEecCCccccCCCCceeecCCCChhhHHHHHHhCCCceeecCCCCccccccc-ccCCCCHHHHHHH
Q 003578          298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAG-LFRGLDRFEARKK  376 (809)
Q Consensus       298 ~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g-~~~G~~~~~a~~~  376 (809)
                      +.+++|+ .|++|||++|+||+++||||+||+||+||++||+++++|+||+++++|++|+++++++ +|+||++++||++
T Consensus       241 k~v~lPl-~~r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~k  319 (877)
T COG0525         241 KEVILPL-VGREIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKK  319 (877)
T ss_pred             CEEecCC-CCCeeeeecCcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHH
Confidence            9999999 6899999999999999999999999999999999999999999999999999998885 9999999999999


Q ss_pred             HHHHHHHCCCeeeeecccccCcccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCce
Q 003578          377 LWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDW  456 (809)
Q Consensus       377 i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw  456 (809)
                      |+++|++.|++++.+++.|++|+|+|||+||||++++|||+++..+++.+++++++|+++|+|+++++++.+|+++++||
T Consensus       320 Iv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DW  399 (877)
T COG0525         320 IVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDW  399 (877)
T ss_pred             HHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeccccccceeeEEEEcCCcccEEEcCChhHHHHHHhhhcCCCccccccCCccceeecccCccceecCCCCCChhhhhh
Q 003578          457 CISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKK  536 (809)
Q Consensus       457 ~ISRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~  536 (809)
                      |||||+|||||||+|||.+ ++...++.+..+...+ ...|. ...+.+++|||||||+|++|||+++|||.++ .+|++
T Consensus       400 cISRQlwwGh~IPvWy~~~-~g~v~v~~~~~~~~~~-~~~~~-~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t-~~l~~  475 (877)
T COG0525         400 CISRQLWWGHRIPVWYCKE-CGNVVVAEEEPEDPAA-AEKCP-KEELEQDEDVLDTWFSSSLWPFSTLGWPEET-PDLKK  475 (877)
T ss_pred             eeeeeeecCcccceEEecC-CCcEEeCCccccchhh-hccCc-hhcccCCcchhhhhhhcccccccccCCCCcc-hHHHh
Confidence            9999999999999999964 4566666663333322 11121 2568899999999999999999999999986 89999


Q ss_pred             cCCCcEEEeeehhHHhHHHHHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhC
Q 003578          537 FYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG  616 (809)
Q Consensus       537 ~~p~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~  616 (809)
                      +||+|++++|+||||||+++|+++++.++|+.||+.|++||+|+|.+|+|||||+||||+|.++|++||+|+|||+|++.
T Consensus       476 fyPt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~  555 (877)
T COG0525         476 FYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASL  555 (877)
T ss_pred             cCCCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHH
Q 003578          617 TA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVT  695 (809)
Q Consensus       617 ~~-~~d~~fs~~~l~~~~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~  695 (809)
                      +. ++|++|+++.++++++|+|||||+.||++.++.+.... +            .+....+..|+||+++++++++.++
T Consensus       556 ~~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~-~------------~~~~~~~~~drWIls~l~~~v~~v~  622 (877)
T COG0525         556 ASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPD-D------------LDLLALSLADRWILSRLNETVKEVT  622 (877)
T ss_pred             cCCCcccCcCHHHHHHHHHHHHHHHhHHHHHHhcccccCcc-c------------ccccccchHHHHHHHHHHHHHHHHH
Confidence            55 99999999999999999999999999999887543320 0            0002235789999999999999999


Q ss_pred             HHhhcCChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccC
Q 003578          696 ASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR  775 (809)
Q Consensus       696 ~a~e~~~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~~  775 (809)
                      ++|++|+|..|.+++++|+|++||+||||++|++++.+  ++.+.+++.+|+++++.+++||||||||+||+||+.|+..
T Consensus       623 ~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~~--~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~  700 (877)
T COG0525         623 EALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGG--EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT  700 (877)
T ss_pred             HHHHhhhHHHHHHHHHHHhHHHHHHHHHHHhhhhhcCc--HHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCCC
Confidence            99999999999999999999999999999999999986  4466689999999999999999999999999999999876


Q ss_pred             CCceEecCCCCCCC-cCCHHHHHHHHHHHHHHhhC
Q 003578          776 KEALIVSPWPQTSL-PRHMSAIKRFENLQSLVILI  809 (809)
Q Consensus       776 ~~sv~~~~wP~~~~-~~d~~~~~~~~~~~~~~~~~  809 (809)
                       .||+.++||..+. ..|+++++.++.++++++++
T Consensus       701 -~si~~~~~P~~~~~~~d~~a~~~~~~l~~ii~~i  734 (877)
T COG0525         701 -ESIHLASWPEVDEELIDEEAEKEFELLKEIISAI  734 (877)
T ss_pred             -CeEEeccCCCcchhhccHHHHHHHHHHHHHHHHH
Confidence             7999999999985 79999999999999998764

>PLN02943 aminoacyl-tRNA ligase Back     alignment and domain information
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02381 valyl-tRNA synthetase Back     alignment and domain information
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>PRK05729 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00422 valS valyl-tRNA synthetase Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>PLN02882 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK13208 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02843 isoleucyl-tRNA synthetase Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>PLN02959 aminoacyl-tRNA ligase Back     alignment and domain information
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00398 metG methionyl-tRNA synthetase Back     alignment and domain information
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>TIGR00435 cysS cysteinyl-tRNA synthetase Back     alignment and domain information
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional Back     alignment and domain information
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase Back     alignment and domain information
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12418 cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02946 cysteine-tRNA ligase Back     alignment and domain information
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase Back     alignment and domain information
>TIGR00456 argS arginyl-tRNA synthetase Back     alignment and domain information
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases Back     alignment and domain information
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A Back     alignment and domain information
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases Back     alignment and domain information
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete Back     alignment and domain information
>PRK12451 arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02286 arginine-tRNA ligase Back     alignment and domain information
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases Back     alignment and domain information
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases Back     alignment and domain information
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases Back     alignment and domain information
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases Back     alignment and domain information
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains Back     alignment and domain information
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family Back     alignment and domain information
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family Back     alignment and domain information
>PRK12558 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05347 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN03233 putative glutamate-tRNA ligase; Provisional Back     alignment and domain information
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional Back     alignment and domain information
>PLN02907 glutamate-tRNA ligase Back     alignment and domain information
>PTZ00437 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00402 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00440 glnS glutaminyl-tRNA synthetase Back     alignment and domain information
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase Back     alignment and domain information
>PLN02627 glutamyl-tRNA synthetase Back     alignment and domain information
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase Back     alignment and domain information
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase Back     alignment and domain information
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02859 glutamine-tRNA ligase Back     alignment and domain information
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed Back     alignment and domain information
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases Back     alignment and domain information
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13354 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK05912 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12556 tryptophanyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>PRK08560 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>TIGR00233 trpS tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed Back     alignment and domain information
>PTZ00126 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>TIGR00234 tyrS tyrosyl-tRNA synthetase Back     alignment and domain information
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase Back     alignment and domain information
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>PLN02486 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK13354 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>PRK08560 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query809
1gax_A 862 Crystal Structure Of Thermus Thermophilus Valyl-Trn 0.0
1jzq_A821 Isoleucyl-Trna Synthetase Complexed With Isoleucyl- 2e-66
1qu2_A 917 Insights Into Editing From An Ile-Trna Synthetase S 4e-63
1wka_A147 Structural Basis For Non-Cognate Amino Acid Discrim 4e-28
1wk9_A146 Structural Basis For Non-Cognate Amino Acid Discrim 1e-27
1wkb_A810 Crystal Structure Of Leucyl-Trna Synthetase From Th 2e-23
1wz2_A 967 The Crystal Structure Of Leucyl-Trna Synthetase And 4e-23
4aq7_A880 Ternary Complex Of E. Coli Leucyl-Trna Synthetase, 3e-22
2v0c_A878 Leucyl-Trna Synthetase From Thermus Thermophilus Co 7e-22
1obh_A878 Leucyl-Trna Synthetase From Thermus Thermophilus Co 8e-22
2d54_A502 Crystal Structure Of Methionyl Trna Synthetase Y225 6e-11
1a8h_A500 Methionyl-Trna Synthetase From Thermus Thermophilus 9e-11
1woy_A500 Crystal Structure Of Methionyl Trna Synthetase Y225 9e-11
3ziu_A637 Crystal Structure Of Mycoplasma Mobile Leucyl-trna 2e-10
4dlp_A536 Crystal Structure Of Methionyl-Trna Synthetase Metr 5e-10
2x1l_A524 Crystal Structure Of Mycobacterium Smegmatis Methio 6e-10
3o0a_A219 Crystal Structure Of The Wild Type Cp1 Hydrolitic D 1e-07
2ajg_A196 Crystal Structure Of The Editing Domain Of E. Coli 1e-07
4eg1_A542 Trypanosoma Brucei Methionyl-Trna Synthetase In Com 1e-07
4eg1_A542 Trypanosoma Brucei Methionyl-Trna Synthetase In Com 4e-04
4eg5_A542 Trypanosoma Brucei Methionyl-Trna Synthetase In Com 2e-07
4eg5_A542 Trypanosoma Brucei Methionyl-Trna Synthetase In Com 4e-04
3pz0_A221 The Crystal Structure Of Aaleurs-Cp1 Length = 221 2e-07
3pz5_A201 The Crystal Structure Of Aaleurs-Cp1-D20 Length = 2 2e-07
3tun_A542 Trypanosoma Brucei Methionyl-Trna Synthetase In Com 2e-07
3tun_A542 Trypanosoma Brucei Methionyl-Trna Synthetase In Com 4e-04
2csx_A497 Crystal Structure Of Aquifex Aeolicus Methionyl-Trn 2e-07
1wny_A186 Isoleucyl-Trna Synthetase Editing Domain Length = 1 2e-05
1wk8_A194 Isoleucyl-Trna Synthetase Editing Domain Complexed 3e-05
1ue0_A182 Isoleucyl-Trna Synthetase Editing Domain Complexed 6e-05
1udz_A182 Isoleucyl-Trna Synthetase Editing Domain Length = 1 7e-05
3kfl_A564 Leishmania Major Methionyl-Trna Synthetase In Compl 4e-04
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna Synthetase Complexed With Trna(Val) And Valyl-Adenylate Analogue Length = 862 Back     alignment and structure 
Iteration: 1

 Score =  631 bits (1628), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/764 (44%), Positives = 466/764 (60%), Gaps = 50/764 (6%)
Query: 59  LPKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDI 118
           LPK +D  S E  +    ++  F  N + G  PFVI MPPPNVTGSLHMGHA+  +L+D 
Sbjct: 3   LPKAYDPKSVEPKWAEKWAKNPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDA 62
Query: 119 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYG 178
           ++RY RM+G   +WLPGTDHAGIATQ+VVE++L  EG  R +L R++F +RVW+WKE+ G
Sbjct: 63  LIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESG 122
Query: 179 GTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTA 238
           GTI  Q+KRLGAS DW+RE FT+DE+ SRAV  AF R + +GL Y+   +VNW P  +T 
Sbjct: 123 GTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETT 182
Query: 239 VSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGM 298
           +SDLEVE    PG LY ++Y V G   F+ IAT RPET+F D A+AV+P+DE Y   +G 
Sbjct: 183 LSDLEVETEPTPGKLYTLRYEVEG-GGFIEIATVRPETVFADQAIAVHPEDERYRHLLGK 241
Query: 299 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 358
            A +P+T    +PI++D  V+K+FGTG LK++P HD  DY +  + GL  ++V+N +G +
Sbjct: 242 RARIPLTEV-WIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRM 300
Query: 359 --NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWF 416
               V    RGLDRFEAR+K      E G  VK+E +T+ +    R G  IE  +  QW+
Sbjct: 301 EGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWW 360
Query: 417 VTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYI--- 473
           + M PLAE+ L  + +G++  +PER++K+   WL N+KDW ISRQLWWGH+IP WY    
Sbjct: 361 LRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDC 420
Query: 474 ----VGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDV 529
               V + E Y+    + EA      K        +D DV DTWFSSALWP STLGWP+ 
Sbjct: 421 QAVNVPRPERYLEDPTSCEACGSPRLK--------RDEDVFDTWFSSALWPLSTLGWPE- 471
Query: 530 SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSK 589
             +D K FYP  +L TG+DILF WV+RM + G  F G  PF  V LHGL+ D +G+KMSK
Sbjct: 472 ETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSK 531
Query: 590 TLGNVIDPIDTIKEFGADALRFT-ISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFIL- 647
           + GNVIDP++ ++ +GADALRF  I L T GQD+ L +  L   + F NKL+NA +F+L 
Sbjct: 532 SKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLL 591
Query: 648 --QNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGD 705
             +   ++ D       LA +F               + S+L   ++ +TA Y+      
Sbjct: 592 SREGFQAKEDTP----TLADRF---------------MRSRLSRGVEEITALYEALDLAQ 632
Query: 706 VGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVT 765
             RE Y+  WS+F DWY+EA+K  L      +   + + + +     +LKLLHP MPF+T
Sbjct: 633 AAREVYELVWSEFCDWYLEAAKPALKAGNAHTLRTLEEVLAV-----LLKLLHPMMPFLT 687
Query: 766 EELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLVILI 809
            EL+Q+L   KE L +  WP+    R   A + FE L+  V  +
Sbjct: 688 SELYQALTG-KEELALEAWPEPG-GRDEEAERAFEALKQAVTAV 729
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl- Adenylate Analogue Length = 821 Back     alignment and structure
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase Structure With Trna(Ile) And Mupirocin Length = 917 Back     alignment and structure
>pdb|1WKA|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination By The Valyl-Trna Synthetase Editing Domain Length = 147 Back     alignment and structure
>pdb|1WK9|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination By The Valyl-Trna Synthetase Editing Domain Length = 146 Back     alignment and structure
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The Archaeon Pyrococcus Horikoshii Reveals A Novel Editing Domain Orientation Length = 810 Back     alignment and structure
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And Trna(Leucine) Complex Length = 967 Back     alignment and structure
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase, Trna(Leu) And Leucyl-Adenylate Analogue In The Aminoacylation Conformation Length = 880 Back     alignment and structure
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Sulphamoyl Analogue Of Leucyl-Adenylate In The Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3- Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The Editing Site Length = 878 Back     alignment and structure
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Pre-Transfer Editing Substrate Analogue In Both Synthetic Active Site And Editing Site Length = 878 Back     alignment and structure
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a Mutant From Thermus Thermophilus Length = 502 Back     alignment and structure
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus Length = 500 Back     alignment and structure
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f Mutant From Thermus Thermophilus Length = 500 Back     alignment and structure
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna Synthetase With Leu-ams In The Active Site Length = 637 Back     alignment and structure
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From Brucella Melitensis Bound To Selenomethionine Length = 536 Back     alignment and structure
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Methionyl-Trna Synthetase In Complex With Methionine And Adenosine Length = 524 Back     alignment and structure
>pdb|3O0A|A Chain A, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain From Aquifex Aeolicus Leucyl-Trna Length = 219 Back     alignment and structure
>pdb|2AJG|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl- Trna Synthetase Length = 196 Back     alignment and structure
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Substrate Methionine Length = 542 Back     alignment and structure
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Substrate Methionine Length = 542 Back     alignment and structure
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1312 Length = 542 Back     alignment and structure
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1312 Length = 542 Back     alignment and structure
>pdb|3PZ0|A Chain A, The Crystal Structure Of Aaleurs-Cp1 Length = 221 Back     alignment and structure
>pdb|3PZ5|A Chain A, The Crystal Structure Of Aaleurs-Cp1-D20 Length = 201 Back     alignment and structure
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1356 Length = 542 Back     alignment and structure
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1356 Length = 542 Back     alignment and structure
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna Synthetase Complexed With Trna(Met) Length = 497 Back     alignment and structure
>pdb|1WNY|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Length = 186 Back     alignment and structure
>pdb|1WK8|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With The Pre-Transfer Editing Substrate Analogue, Val-Ams Length = 194 Back     alignment and structure
>pdb|1UE0|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With L- Valine Length = 182 Back     alignment and structure
>pdb|1UDZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Length = 182 Back     alignment and structure
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With Methionyladenylate And Pyrophosphate Length = 564 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query809
1gax_A 862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 0.0
1wz2_A 967 Leucyl-tRNA synthetase; ligase, riken structural g 1e-159
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 1e-144
1ile_A821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 1e-116
1ffy_A 917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 7e-93
1wka_A147 Valyl-tRNA synthetase; editing, CP1, fidelity, the 3e-72
4arc_A880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 2e-29
4arc_A880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 6e-15
2v0c_A878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 5e-28
2v0c_A878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 8e-14
2x1l_A524 Methionyl-tRNA synthetase; nucleotide-binding, pro 2e-20
2x1l_A524 Methionyl-tRNA synthetase; nucleotide-binding, pro 1e-10
2d5b_A500 Methionyl-tRNA synthetase; rossmann fold, class 1A 8e-18
2d5b_A500 Methionyl-tRNA synthetase; rossmann fold, class 1A 1e-10
3tun_A542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 1e-17
3tun_A542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 3e-09
4dlp_A536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 5e-17
4dlp_A536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 4e-10
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 7e-17
1rqg_A722 Methionyl-tRNA synthetase; translation, dimerizati 4e-09
3kfl_A564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 4e-16
3kfl_A564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 1e-09
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 2e-15
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 3e-10
2ajg_A196 Leucyl-tRNA synthetase; editing domain, ligase; 2. 3e-14
2wfg_A261 Cytosolic leucyl-tRNA synthetase; ligase, editing 6e-14
1wny_A186 Isoleucyl-tRNA synthetase; ligase, structural geno 2e-13
3pz6_A311 Leurs, leucyl-tRNA synthetase; editing domain, gll 5e-13
3o0a_A219 Leucyl-tRNA synthetase subunit alpha; CP1 hydrolyt 9e-13
3h99_A560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 4e-12
3h99_A560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 5e-06
2wfd_A252 Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRN 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862 Back     alignment and structure
 Score = 1215 bits (3146), Expect = 0.0
 Identities = 333/755 (44%), Positives = 461/755 (61%), Gaps = 32/755 (4%)

Query: 59  LPKTFDFTS-EERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLED 117
           LPK +D  S E +    W  +  F  N + G  PFVI MPPPNVTGSLHMGHA+  +L+D
Sbjct: 3   LPKAYDPKSVEPKWAEKWA-KNPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQD 61

Query: 118 IMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKY 177
            ++RY RM+G   +WLPGTDHAGIATQ+VVE++L  EG  R +L R++F +RVW+WKE+ 
Sbjct: 62  ALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEES 121

Query: 178 GGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQT 237
           GGTI  Q+KRLGAS DW+RE FT+DE+ SRAV  AF R + +GL Y+   +VNW P  +T
Sbjct: 122 GGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCET 181

Query: 238 AVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 297
            +SDLEVE    PG LY ++Y V G   F+ IAT RPET+F D A+AV+P+DE Y   +G
Sbjct: 182 TLSDLEVETEPTPGKLYTLRYEVEG-GGFIEIATVRPETVFADQAIAVHPEDERYRHLLG 240

Query: 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 357
             A +P+T    +PI++D  V+K+FGTG LK++P HD  DY +  + GL  ++V+N +G 
Sbjct: 241 KRARIPLT-EVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGR 299

Query: 358 LNE--VAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQW 415
           +    V    RGLDRFEAR+K      E G  VK+E +T+ +    R G  IE  +  QW
Sbjct: 300 MEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQW 359

Query: 416 FVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVG 475
           ++ M PLAE+ L  + +G++  +PER++K+   WL N+KDW ISRQLWWGH+IP WY   
Sbjct: 360 WLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWY-CE 418

Query: 476 KEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFK 535
             +   V R      +    +   +  + +D DV DTWFSSALWP STLGWP+   +D K
Sbjct: 419 DCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPE-ETEDLK 477

Query: 536 KFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVI 595
            FYP  +L TG+DILF WV+RM + G  F G  PF  V LHGL+ D +G+KMSK+ GNVI
Sbjct: 478 AFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVI 537

Query: 596 DPIDTIKEFGADALRFTISLG-TAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQN 654
           DP++ ++ +GADALRF +    T GQD+ L +  L   + F NKL+NA +F+L +     
Sbjct: 538 DPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLLSRE--- 594

Query: 655 DISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFF 714
                     ++  E+       L + ++ S+L   ++ +TA Y+        RE Y+  
Sbjct: 595 ---------GFQAKEDT----PTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELV 641

Query: 715 WSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRK 774
           WS+F DWY+EA+K  L      +        L  +   +LKLLHP MPF+T EL+Q+L  
Sbjct: 642 WSEFCDWYLEAAKPALK-----AGNAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQAL-T 695

Query: 775 RKEALIVSPWPQTSLPRHMSAIKRFENLQSLVILI 809
            KE L +  WP+    R   A + FE L+  V  +
Sbjct: 696 GKEELALEAWPEPG-GRDEEAERAFEALKQAVTAV 729
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Length = 917 Back     alignment and structure
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A* Length = 147 Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Length = 880 Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Length = 880 Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878 Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878 Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 Back     alignment and structure
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542 Back     alignment and structure
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542 Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 Back     alignment and structure
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A Length = 196 Back     alignment and structure
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A* Length = 261 Back     alignment and structure
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A Length = 186 Back     alignment and structure
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis} Length = 311 Back     alignment and structure
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A Length = 219 Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 Back     alignment and structure
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens} Length = 252 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 809
d1h3na3494 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas 3e-68
d1ivsa4425 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase 2e-53
d1ivsa4425 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase 1e-49
d1ilea3452 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe 5e-47
d1ilea3452 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe 1e-36
d1ffya3450 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe 3e-42
d1ffya3450 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe 2e-35
d1wkaa1143 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) 4e-31
d1ffya2194 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (Il 2e-26
d1pfva2350 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe 2e-22
d1pfva2350 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe 1e-16
d1h3na2192 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS 5e-21
d2d5ba2348 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR 6e-21
d2d5ba2348 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR 1e-18
d1udza_179 b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {T 3e-19
d1ilea1180 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (Il 2e-16
d1rqga2361 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe 2e-16
d1rqga2361 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe 4e-16
d1ffya1 273 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (Il 4e-13
d1li5a2315 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR 5e-11
d1h3na1128 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS 1e-09
d1ivsa2218 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) 3e-09
d1irxa2317 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { 7e-08
d1irxa2317 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { 1e-05
d2d5ba1152 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (Me 3e-04
d1rqga1210 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (Me 0.004
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Leucyl-tRNA synthetase (LeuRS)
species: Thermus thermophilus [TaxId: 274]

 Score =  232 bits (591), Expect = 3e-68
 Identities = 85/575 (14%), Positives = 160/575 (27%), Gaps = 89/575 (15%)

Query: 61  KTFDFTS-EERIYNWWESQGYFKPNFERGSDP-FVISMPPPNVTGSLHMGHAMFVTLEDI 118
           + ++  + E +   +WE +G+ K     G      + +  P  +G LHMGH    T+ D+
Sbjct: 2   EKYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDV 61

Query: 119 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYG 178
           + R+ RM+G   L   G D  G+  +    K                F     +W     
Sbjct: 62  LARFRRMQGYEVLHPMGWDAFGLPAENAALK----------------FGVHPKDWTYANI 105

Query: 179 GTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTA 238
                 ++ +G   DW RE  T + +  R     F+++ EKGL Y+   +VNW P  QT 
Sbjct: 106 RQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTV 165

Query: 239 VSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGM 298
           +++ +V              +      +L I       L           +         
Sbjct: 166 LANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKD--------LEGLNWPEKVK 217

Query: 299 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 358
                        +IS                           ++     + +++ +   
Sbjct: 218 AMQRAWIGRLRDWLISR--------------------------QRYWGTPIPMVHCEACG 251

Query: 359 NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVI-EPLVSKQWFV 417
                           K +     +    ++  P        + GG    +      +F 
Sbjct: 252 VVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFF- 310

Query: 418 TMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKE 477
                                       Y  +     D            +PV   +G  
Sbjct: 311 -----------------------DSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGV 347

Query: 478 EEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKF 537
           E  ++         K          + +  +     F+  +    T   P        + 
Sbjct: 348 EHAVLHLLYSRFFTKFLHDL----GMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRL 403

Query: 538 YPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDP 597
              T +          +  +  MG E          +  G +   +   MSK+ GN +  
Sbjct: 404 PEPTRIRLEIPESALSLEDVRKMGAEL-------RPHEDGTLHLWKPAVMSKSKGNGVMV 456

Query: 598 IDTIKEFGADALRFTI-SLGTAGQDLSLSIERLTA 631
              +KE GAD  R TI        ++  + E +  
Sbjct: 457 GPFVKEQGADIARITILFAAPPENEMVWTEEGVQG 491
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 Back     information, alignment and structure
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 143 Back     information, alignment and structure
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 194 Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 Back     information, alignment and structure
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 192 Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 Back     information, alignment and structure
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 179 Back     information, alignment and structure
>d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 180 Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 Back     information, alignment and structure
>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 273 Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 Back     information, alignment and structure
>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 128 Back     information, alignment and structure
>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 218 Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 Back     information, alignment and structure
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 152 Back     information, alignment and structure
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 210 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query809
d1ffya3450 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 100.0
d1ivsa4425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 100.0
d1ilea3452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 100.0
d1h3na3494 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 100.0
d1rqga2361 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 100.0
d1pfva2350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 100.0
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 100.0
d1wkaa1143 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 100.0
d1li5a2315 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 100.0
d1udza_179 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 100.0
d1ffya2194 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 99.97
d1h3na2192 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 99.97
d1ilea1180 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 99.95
d1ivsa2218 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 99.94
d1ffya1 273 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 99.94
d1irxa2317 Class I lysyl-tRNA synthetase {Archaeon Pyrococcus 99.92
d1f7ua2348 Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa 99.76
d1h3na1128 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 99.72
d1iq0a2370 Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi 99.69
d1rqga1210 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 99.57
d1j09a2305 Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph 99.3
d1pfva1162 Methionyl-tRNA synthetase (MetRS) {Escherichia col 99.28
d2d5ba1152 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 99.23
d1nzja_286 Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c 98.18
d1gtra2331 Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co 98.13
d1h3fa1343 Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi 96.49
d1jila_323 Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au 96.4
d1j1ua_306 Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc 94.44
d2ts1a_319 Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth 94.31
d1n3la_339 Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie 91.07
d1r6ta2386 Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo 88.67
d1n3la_339 Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie 87.14
d1h3fa1343 Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi 85.96
d1j1ua_306 Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc 84.99
d2ts1a_319 Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth 82.81
d1r6ta2386 Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo 81.52
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=0  Score=736.08  Aligned_cols=419  Identities=27%  Similarity=0.470  Sum_probs=368.7

Q ss_pred             CCCCCCCCCCC-----CCH-HHHHHHHHHHHHCCCCCCCCC--CCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             45789999999-----991-569999999996699777877--9999989958999889978600457877999999999
Q 003578           52 AENNKDTLPKT-----FDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYH  123 (809)
Q Consensus        52 ~~~~~~~~~~~-----~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~  123 (809)
                      ++++|..||++     +++ ++|++||++|+++++|++..+  +++++|+|++|||||||.||||||++++++||++||+
T Consensus         2 ~~~~tl~lp~t~f~~~~~~~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~~~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~   81 (450)
T d1ffya3           2 DYEKTLLMPKTDFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYK   81 (450)
T ss_dssp             CSGGGSCCCCCCCCSSCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             84102178789997778867889999999987798114210258998389963898988852366889999999999999


Q ss_pred             HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf             98799602259899889733799999999829994235889999999999999999999999980434457785214873
Q 003578          124 RMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDE  203 (809)
Q Consensus       124 rm~G~~V~~~~G~D~~Gl~~e~~~e~~l~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~lg~~~Dw~~~~~T~d~  203 (809)
                      ||+|++|+|++||||||+|+|.++    .+.+..+.++++++|.+.|++++.++++.+++++++||+++||+++|+|+++
T Consensus        82 rm~G~~V~~~~G~D~~G~pie~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~  157 (450)
T d1ffya3          82 TMQGFYAPYVPGWDTHGLPIEQAL----TKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKP  157 (450)
T ss_dssp             HTTTCBCCCCCEEBCCSHHHHHHH----HHHTCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSH
T ss_pred             HHCCCCCCCCCCCCCCCCHHHHHH----HHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf             946991310243024772999988----7508861101489885412001333223478899887653013211123208


Q ss_pred             HHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCEE
Q ss_conf             56999999999999869656657465238999964573110124578913899999659870699982688523679489
Q 003578          204 QLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVAL  283 (809)
Q Consensus       204 ~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~ls~~Ev~~~~~~~~~~~~~f~~~~~~~~l~v~TtrPetl~~~~ai  283 (809)
                      .|.+.++++|.+|+++|+||++.++|+|||.|+|++++.|++                                      
T Consensus       158 ~~~~~v~~~f~~l~~~G~iy~~~~~v~~~p~~~~~~~~~e~~--------------------------------------  199 (450)
T d1ffya3         158 EYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIE--------------------------------------  199 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEE--------------------------------------
T ss_pred             HHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCC--------------------------------------
T ss_conf             999999999999997698002345453322558642234311--------------------------------------


Q ss_pred             EECCCCCHHHHCCCCEEECCCCCCCEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCC
Q ss_conf             98899920211014855667899981439745874456789944306899934699999919990320479985223356
Q 003578          284 AVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAG  363 (809)
Q Consensus       284 ~v~p~~~~y~~l~g~~~~~P~~~~~~vpii~~~~V~~~~GtG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g  363 (809)
                                                                                                      
T Consensus       200 --------------------------------------------------------------------------------  199 (450)
T d1ffya3         200 --------------------------------------------------------------------------------  199 (450)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEEECCCEEEECCHHHHHHHHHHHCCCCEEECCHHH
Q ss_conf             34899889999999999997799001303224676323699716880113112505378999999986398047550148
Q 003578          364 LFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFE  443 (809)
Q Consensus       364 ~~~g~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~  443 (809)
                                                       +|+|+||+.+++.+.++|||+++..+++.+++.+.  .+.+.|+..+
T Consensus       200 ---------------------------------~~~~~r~~~~~~~~~~~qwf~~~~~~~~~~~~~~~--~~~~~~~~~~  244 (450)
T d1ffya3         200 ---------------------------------YPHDWRTKKPVIFRATPQWFASISKVRQDILDAIE--NTNFKVNWGK  244 (450)
T ss_dssp             ---------------------------------EEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHH--TSEESSHHHH
T ss_pred             ---------------------------------CCCCCCCCCCCEEECCCCCEECCCCCCCCCHHHCC--CCCCCCCCCC
T ss_conf             ---------------------------------12233356774432255420011212120011011--2212455320


Q ss_pred             HHHHHHHHCCCCEEEECCCCCCCEEEEEEECCCCCCEEECCCHHHHHHHHH-----------------HH---C-CCCCC
Q ss_conf             899999715876221025644311039998278651898089358999975-----------------51---5-99853
Q 003578          444 KIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAH-----------------QK---Y-GKNVE  502 (809)
Q Consensus       444 ~~~~~~l~~l~DW~ISRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~---~-~~~~~  502 (809)
                      .++..|+++++||||||||+||+|+|+|+|.. ++.+..............                 ..   + ..+..
T Consensus       245 ~~~~~~~~~~~Dw~iSRqr~WG~piP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (450)
T d1ffya3         245 TRIYNMVRDRGEWVISRQRVWGVPLPVFYAEN-GEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGT  323 (450)
T ss_dssp             HHHHHHHHHCCCEECEESCSSSCBCCCEECTT-SCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSC
T ss_pred             EEEECCCCCCCCHHEEEECCCCCCCCEEECCC-CCEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             12310136753000011000156764354378-98733511367787765532764334564000245421135899875


Q ss_pred             CCCCCCCCCEEECCCCCCCEECCCCCCCHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECC
Q ss_conf             21158754200025674330037999994455200897477840035775899999999874199872159994268856
Q 003578          503 IYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDS  582 (809)
Q Consensus       503 ~~~~~dvld~WfdS~l~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~  582 (809)
                      +.+++||+|+||+|+++++..++++      +..+||+|++++|+||+|+|++++++.++.+.++.||++|++||+|+|.
T Consensus       324 ~~~~~dvld~wfds~~~~~~~~~~~------~~~~~P~d~~~~G~Di~r~w~~~~~~~~~~~~~~~Pfk~v~~hG~vld~  397 (450)
T d1ffya3         324 FTKETDIMDVWFDSGSSHRGVLETR------PELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDG  397 (450)
T ss_dssp             CEECCCEECHHHHHHTHHHHTTTTS------TTCCSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEECCEECT
T ss_pred             CEEEEEEECCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECC
T ss_conf             2144133113456555642111333------4446787543457512307999999999996499875067873608999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf             8972211346766935579761872688988608988752346888898999
Q 003578          583 QGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKA  634 (809)
Q Consensus       583 ~G~KMSKS~GN~i~p~eii~~ygaDalR~~l~s~~~~~d~~fs~~~l~~~~~  634 (809)
                      +|+|||||+||+|+|.+++++||+|+|||||+++++++|++|+++.++..++
T Consensus       398 ~G~KMSKS~GN~I~p~dii~~yGaDalR~~l~s~~~~~D~~fs~~~l~~~~~  449 (450)
T d1ffya3         398 EGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSD  449 (450)
T ss_dssp             TSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHTSCTTSCEECCHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHC
T ss_conf             8888778899985989999881948999999709988786749999998646
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Back     information, alignment and structure
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Back     information, alignment and structure
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure